Query gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 252 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:41:50 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781189.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1zata2 d.335.1.1 (A:217-338) 24.1 16 0.0011 14.8 1.6 46 109-155 2-47 (122) 2 d1zq1c1 a.182.1.2 (C:457-512) 14.0 23 0.0017 13.7 0.6 34 176-209 10-43 (56) 3 d2k49a1 d.348.1.1 (A:59-110) U 12.2 35 0.0025 12.6 1.1 13 3-15 29-41 (52) 4 d2deka1 c.90.1.1 (A:1-265) Dip 11.7 39 0.0028 12.3 2.1 17 167-183 196-213 (265) 5 d1m6ia3 d.87.1.1 (A:478-608) A 10.7 42 0.0031 12.1 1.3 18 232-249 101-118 (131) 6 d2k8ea2 d.348.1.1 (A:75-126) U 10.4 43 0.0031 12.0 1.1 13 3-15 29-41 (52) 7 d2frea1 d.90.1.1 (A:1-200) NAD 7.5 21 0.0016 13.9 -1.5 53 133-185 137-200 (200) 8 d1e0na_ b.72.1.1 (A:) Hypothet 7.3 57 0.0042 11.2 1.1 14 119-132 2-15 (27) 9 d2d6fc1 a.182.1.2 (C:445-503) 7.1 17 0.0013 14.5 -2.2 34 176-209 10-43 (59) 10 d1tzyc_ a.22.1.1 (C:) Histone 7.0 53 0.0039 11.4 0.3 42 185-226 50-95 (95) No 1 >d1zata2 d.335.1.1 (A:217-338) L,D-transpeptidase, pre-catalytic domain {Enterococcus faecium [TaxId: 1352]} Probab=24.15 E-value=16 Score=14.81 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=35.6 Q ss_pred HHHHHHHHCCCEEEEEECCCCCHHEECHHHHHHHHHCCHHHHHCCHH Q ss_conf 55576520231356660289301102048888776071455422525 Q gi|254781189|r 109 EACACLTQYDRYEVIYNFGGPMYGVIVPDFIHDLLDIPEEKRRLNTS 155 (252) Q Consensus 109 eacacltqydryeviynfggpmygvivpdfihdlldipeekrrlnts 155 (252) ++|+-|..|-.-.|-|+|||-.+ ++-++-|++.+.+.+.+--++.+ T Consensus 2 ~~~~~lnk~~~~~ITY~~~~~~~-~ld~~~I~~Wl~~dd~~v~~d~~ 47 (122) T d1zata2 2 EQLASMNAIANVKATYSINGETF-QIPSSDIMSWLTYNDGKVDLDTE 47 (122) T ss_dssp CHHHHHHHHHHCCEEEEETTEEE-ECCHHHHHHHEEEETTEEEECHH T ss_pred HHHHHHHHHHCCEEEEEECCEEE-EECHHHHHHHEEECCCCEEECHH T ss_conf 48999999869589999899899-98789954338976991888899 No 2 >d1zq1c1 a.182.1.2 (C:457-512) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Pyrococcus abyssi [TaxId: 29292]} Probab=14.03 E-value=23 Score=13.75 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=28.6 Q ss_pred ECCCCCCCHHHHHHHCHHHHHHHHHHHHHHEECC Q ss_conf 4576585178886438789999974335332356 Q gi|254781189|r 176 YDNKYRPSAEAMRTICPTKLMKIFEDTISLYVDP 209 (252) Q Consensus 176 ydnkyrpsaeamrticptklmkifedtislyvdp 209 (252) |-+.|.-|.+--+.|+..+-+..||..++..+|| T Consensus 10 y~~eygLs~~dA~~l~~~~~~~~Fee~v~~~~~p 43 (56) T d1zq1c1 10 YVKEYKLDRSLAQTLVDDERDELFEELVSMGVKP 43 (56) T ss_dssp HHTTTCCCHHHHHHHHHTSTHHHHHHHHHTTCST T ss_pred HHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCCH T ss_conf 9998397999999998775799999999809989 No 3 >d2k49a1 d.348.1.1 (A:59-110) Uncharacterized protein SO3888 {Shewanella oneidensis [TaxId: 70863]} Probab=12.22 E-value=35 Score=12.59 Aligned_cols=13 Identities=38% Similarity=0.468 Sum_probs=8.5 Q ss_pred CHHHHHHHHHHHH Q ss_conf 2034430377999 Q gi|254781189|r 3 KASMRNGILSIKR 15 (252) Q Consensus 3 kasmrngilsikr 15 (252) |+++.|||-|+|+ T Consensus 29 k~~~~~gI~sVk~ 41 (52) T d2k49a1 29 TAARDNGIKSVME 41 (52) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 7889999999996 No 4 >d2deka1 c.90.1.1 (A:1-265) Diphthine synthase, DphB {Pyrococcus horikoshii [TaxId: 53953]} Probab=11.73 E-value=39 Score=12.32 Aligned_cols=17 Identities=24% Similarity=0.096 Sum_probs=7.8 Q ss_pred CCCCCCCEEE-CCCCCCC Q ss_conf 0266886354-5765851 Q gi|254781189|r 167 VRSSETPVVY-DNKYRPS 183 (252) Q Consensus 167 vrssetpvvy-dnkyrps 183 (252) .++.+||++- .|-.+|. T Consensus 196 g~~~dtpv~v~~~~g~~d 213 (265) T d2deka1 196 VFTDDTLVVVLARAGSLN 213 (265) T ss_dssp SSCTTCEEEEEESTTSSS T ss_pred CCCCCCEEEEEEECCCCC T ss_conf 899898099999889797 No 5 >d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Probab=10.65 E-value=42 Score=12.09 Aligned_cols=18 Identities=39% Similarity=0.407 Sum_probs=13.7 Q ss_pred HCCCCCHHHHHHHHHHHH Q ss_conf 608742357888874232 Q gi|254781189|r 232 EKGKFNEMSIARKAFNRR 249 (252) Q Consensus 232 ekgkfnemsiarkafnrr 249 (252) --.-||.|.+||+-.+.. T Consensus 101 LWNvFnrm~iAR~iI~~~ 118 (131) T d1m6ia3 101 LWNIFNRMPIARKIIKDG 118 (131) T ss_dssp EESCCSCHHHHHHHHHHC T ss_pred EECCCCCCHHHHHHHHCC T ss_conf 841567648999999747 No 6 >d2k8ea2 d.348.1.1 (A:75-126) Uncharacterized protein YegP {Escherichia coli [TaxId: 562]} Probab=10.38 E-value=43 Score=12.03 Aligned_cols=13 Identities=38% Similarity=0.465 Sum_probs=8.1 Q ss_pred CHHHHHHHHHHHH Q ss_conf 2034430377999 Q gi|254781189|r 3 KASMRNGILSIKR 15 (252) Q Consensus 3 kasmrngilsikr 15 (252) |+++.|||-|+|+ T Consensus 29 k~~~~~gI~sVk~ 41 (52) T d2k8ea2 29 AQSRETGIASVKA 41 (52) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 7889999999986 No 7 >d2frea1 d.90.1.1 (A:1-200) NAD(P)H-flavin oxidoreductase Atu0013 {Agrobacterium tumefaciens [TaxId: 358]} Probab=7.47 E-value=21 Score=13.94 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=32.7 Q ss_pred EECHHHHHHHHHCCHHHHHCCHHHHHHH-----------HHHHHHCCCCCCCEEECCCCCCCHH Q ss_conf 0204888877607145542252578776-----------5311100266886354576585178 Q gi|254781189|r 133 VIVPDFIHDLLDIPEEKRRLNTSYLTYV-----------DRGLLDVRSSETPVVYDNKYRPSAE 185 (252) Q Consensus 133 vivpdfihdlldipeekrrlntsyltyv-----------drglldvrssetpvvydnkyrpsae 185 (252) .+-++.+.++|++|+..+-+..-.+-|. .|..-..|-.-.-+|+.|+|..-+| T Consensus 137 ~~~~~~v~~~L~lp~~~~~~~~l~vGy~~~~~~~~~~~~~~~~~~~R~pl~evv~~~~~~~~~~ 200 (200) T d2frea1 137 GIFKDRIVEKLDIPDGFKVEAGVAIGTLTDKSILPDDLAEREVPSKRVPLADVAFEGRFTGKAD 200 (200) T ss_dssp CBCHHHHHHHTTCCTTEEEEEEEEEECBCCGGGSCHHHHHTCSCCCCCCGGGTEEESSCCSCCC T ss_pred CCCHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCHHHHHCCCCCCCCCHHHEEEECCCCCCCC T ss_conf 3533779998399999389999998402774557523332038989888899256585688788 No 8 >d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=7.28 E-value=57 Score=11.23 Aligned_cols=14 Identities=36% Similarity=0.695 Sum_probs=10.2 Q ss_pred CEEEEEECCCCCHH Q ss_conf 13566602893011 Q gi|254781189|r 119 RYEVIYNFGGPMYG 132 (252) Q Consensus 119 ryeviynfggpmyg 132 (252) .+|.|..-|.|||- T Consensus 2 gweiihengrpmyy 15 (27) T d1e0na_ 2 GWEIIHENGRPLYY 15 (27) T ss_dssp CEEEEESSSSEEEE T ss_pred CCEEEECCCCEEEE T ss_conf 71666228936266 No 9 >d2d6fc1 a.182.1.2 (C:445-503) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=7.06 E-value=17 Score=14.53 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=25.4 Q ss_pred ECCCCCCCHHHHHHHCHHHHHHHHHHHHHHEECC Q ss_conf 4576585178886438789999974335332356 Q gi|254781189|r 176 YDNKYRPSAEAMRTICPTKLMKIFEDTISLYVDP 209 (252) Q Consensus 176 ydnkyrpsaeamrticptklmkifedtislyvdp 209 (252) |-+.|.-|......++..+-+..||.+++.-+|| T Consensus 10 ~~~eygLs~~dA~~L~~~~~~~~FEe~v~~~~~p 43 (59) T d2d6fc1 10 IMRDYGLSEDLASQLVKRNLVDEFEALTEFRVDT 43 (59) T ss_dssp HHHTTCCCHHHHHHHHHTTCTTTC--------CC T ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCH T ss_conf 9998094999999998274699999999808999 No 10 >d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Probab=7.01 E-value=53 Score=11.43 Aligned_cols=42 Identities=24% Similarity=0.345 Sum_probs=0.0 Q ss_pred HHHHHHCHHHHHHHHHH----HHHHEECCCCCCCCCHHHHHHHHHH Q ss_conf 88864387899999743----3533235688454414455446778 Q gi|254781189|r 185 EAMRTICPTKLMKIFED----TISLYVDPLTPRDISFTQYEKHACA 226 (252) Q Consensus 185 eamrticptklmkifed----tislyvdpltprdisftqyekhaca 226 (252) +|+...+-.-|...||| ++.---..++|+|+.+..+-..-+| T Consensus 50 ~aLQea~E~yLv~lfeda~~~a~HakRvTl~~kD~~LarrirG~r~ 95 (95) T d1tzyc_ 50 MALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 95 (95) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC T ss_conf 9999999999999998807998736988377999999999826689 Done!