RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781189|ref|YP_003065602.1| hypothetical protein
CLIBASIA_05480 [Candidatus Liberibacter asiaticus str. psy62]
(252 letters)
>gnl|CDD|179840 PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional.
Length = 296
Score = 28.6 bits (65), Expect = 1.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 29 LSALGSVGVFFVIFSLPLGALGLYEVHYLW 58
LG G+ +++ +L LGA LY L+
Sbjct: 230 PVLLGMAGLLYLVVALLLGAWFLYYAWRLY 259
>gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase.
Length = 407
Score = 27.8 bits (62), Expect = 2.6
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 203 ISLYVDPLTPRDISFTQYEKHACALVNWLEK 233
+ L V+P P DIS+ Q+ + + ++ L +
Sbjct: 335 MGLMVNPPKPGDISYDQFVRESKGILESLRR 365
>gnl|CDD|182866 PRK10958, PRK10958, leucine export protein LeuE; Provisional.
Length = 212
Score = 27.9 bits (63), Expect = 2.6
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 25 RKSKLSALGS--VGVFFVIFSLPLGALGL 51
R+ KL+A G+ VG+ FV F+ L
Sbjct: 184 RRKKLAAGGNSLVGLLFVGFAAKLATATS 212
>gnl|CDD|102369 PRK06424, PRK06424, transcription factor; Provisional.
Length = 144
Score = 27.6 bits (61), Expect = 3.3
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 172 TPVVYDNKYRPSAEAMRTICPTK--LMKIFEDTISLYVDPLTPRDISFTQYEKHACALVN 229
TPV+ NK++ E ++ P K ++ ++ Y + D+ E +A + N
Sbjct: 34 TPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAYKKYKKKASDEDLDIV--EDYAELVKN 91
Query: 230 WLEKGKFNEMSIARKAFNRRS 250
E+ ++ +A K F R++
Sbjct: 92 ARERLSMSQADLAAKIFERKN 112
>gnl|CDD|171459 PRK12388, PRK12388, fructose-1,6-bisphosphatase II-like protein;
Reviewed.
Length = 321
Score = 27.3 bits (60), Expect = 4.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 88 EQAIQLKIKEDSASERLVKATEACACLTQYDRYEVIYNFGGPMYGVI 134
E+A QL +K + + V A+ C Q + Y+V+Y GG GVI
Sbjct: 171 EEATQLGVKVFALPDGDVAAS-VLTCW-QDNPYDVMYTIGGAPEGVI 215
>gnl|CDD|166304 PLN02663, PLN02663, hydroxycinnamoyl-CoA:shikimate/quinate
hydroxycinnamoyltransferase.
Length = 431
Score = 27.2 bits (60), Expect = 4.7
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 150 RRLNTSYLTYVDRGLLDVRSSETPVVYDNKYRPSAEAMRTICPT 193
R L+ + ++DR LL R P + +Y+P +M+T T
Sbjct: 173 RGLDLTIPPFIDRTLLRARDPPQPAFHHVEYQP-PPSMKTPLET 215
>gnl|CDD|150410 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 561
Score = 27.0 bits (60), Expect = 5.1
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 79 RLNDIKYEEEQAIQLKIKE------DSASERLVKATEAC 111
+L ++K EEE+ ++ +KE E L+ E
Sbjct: 246 KLAELKAEEEEELERALKEKREELLSKLEEELLARLEEK 284
>gnl|CDD|185057 PRK15102, PRK15102, trimethylamine N-oxide reductase I catalytic
subunit; Provisional.
Length = 825
Score = 26.6 bits (59), Expect = 6.8
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 98 DSASERLVKATEACACLTQYDRYE----VIYNFGGP 129
D + +L +AT A CL + ++Y+ + +F GP
Sbjct: 785 DIGTSQLAQATSAHTCLVEIEKYQGKVPPVTSFNGP 820
>gnl|CDD|183603 PRK12574, PRK12574, putative monovalent cation/H+ antiporter
subunit B; Reviewed.
Length = 141
Score = 26.2 bits (58), Expect = 9.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 59 VIFVSSLSLAIVAFGVEECL 78
+IF S+ L +AFGVEE L
Sbjct: 42 LIFSSAFILMFLAFGVEEVL 61
>gnl|CDD|130580 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
P-type ATPase. The calcium P-type ATPases have been
characterized as Type IIB based on a phylogenetic
analysis which distinguishes this group from the Type
IIA SERCA calcium pump. A separate analysis divides Type
IIA into sub-types (SERCA and PMR1), which are modelled
by the corresponding TIGR01116 and TIGR01522. This model
is well separated from the two others.
Length = 941
Score = 26.3 bits (58), Expect = 9.1
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 2/48 (4%)
Query: 31 ALGSVGVFFVIF-SLPLGALGLYEVHYLWVIFVSSLSLAIVAFGVEEC 77
V V F + L ++ + + LSL I +
Sbjct: 892 FTFGFQVIIVEFGGSFFSTVSLSIEQWIGCVLLGMLSL-IFGVLLRLI 938
>gnl|CDD|150772 pfam10136, SpecificRecomb, Site-specific recombinase. Members of
this family of bacterial proteins are found in various
putative site-specific recombinase transmembrane
proteins.
Length = 647
Score = 26.0 bits (58), Expect = 9.8
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 11/46 (23%)
Query: 32 LGSVGVFFVIFSLPLGALGLYEV-HYLWVIFVS-SLSLAIVAFGVE 75
LG F LPL +V H V S +L A+ A G +
Sbjct: 546 LGLTPAIGAFFGLPL------DVRH---VTLSSANLGYALGALGFD 582
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.138 0.404
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,152,726
Number of extensions: 262956
Number of successful extensions: 512
Number of sequences better than 10.0: 1
Number of HSP's gapped: 512
Number of HSP's successfully gapped: 23
Length of query: 252
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 161
Effective length of database: 4,028,145
Effective search space: 648531345
Effective search space used: 648531345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.3 bits)