RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781189|ref|YP_003065602.1| hypothetical protein
CLIBASIA_05480 [Candidatus Liberibacter asiaticus str. psy62]
         (252 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 62/433 (14%), Positives = 113/433 (26%), Gaps = 202/433 (46%)

Query: 1   MKKASMRNGILSIKRILKAIL---------SRWRKSKLSALGS----------------- 34
           M   S R   LS   +   +L         S+ ++     L                   
Sbjct: 1   MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60

Query: 35  VGVF--FVIFSLPLGALGLYEVHYLWVIFVSSLSLAIVAFGVEECLRLNDIK------YE 86
           VG F  +V   +    +G ++           L+L +  F     L  NDI        +
Sbjct: 61  VGKFLGYVSSLVEPSKVGQFD---------QVLNLCLTEF-ENCYLEGNDIHALAAKLLQ 110

Query: 87  EEQAIQLKIKEDSASERLVKA-TEACACLTQ-YDRYEV-------------IYN-FGGP- 129
           E     +K K       L+K    A     + +D+                +   FGG  
Sbjct: 111 ENDTTLVKTK------ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164

Query: 130 --------------MYGVIVPDFIH------------------------DL---LDIPEE 148
                          Y V+V D I                         ++   L+ P  
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS- 223

Query: 149 KRRLNTSYLTYVDR-----GLL-----------------DVRS--------SETPVV--- 175
               +  YL  +       G++                 ++RS        S+  V    
Sbjct: 224 -NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282

Query: 176 ------YDNKYRPSAEAMRTI------C----PTKLM--KIFEDTISLYVDPLTP----R 213
                 +++ +    +A+  +      C    P   +   I ED++       +P     
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342

Query: 214 DISFTQYEKH--------------ACALVN-------------------WLEKGKF-NEM 239
           +++  Q + +                +LVN                    L K K  + +
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402

Query: 240 SIARKAFNRRSQR 252
             +R  F   S+R
Sbjct: 403 DQSRIPF---SER 412


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 6/28 (21%)

Query: 87  EEQAIQ-----LKI-KEDSASERLVKAT 108
           E+QA++     LK+  +DSA    +KAT
Sbjct: 18  EKQALKKLQASLKLYADDSAPALAIKAT 45



 Score = 29.2 bits (64), Expect = 0.95
 Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 9/28 (32%)

Query: 185 EAMRTICPTKLMKIFEDTISLYVDPLTP 212
           +A++     KL    + ++ LY D   P
Sbjct: 20  QALK-----KL----QASLKLYADDSAP 38



 Score = 27.3 bits (59), Expect = 4.0
 Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 4/23 (17%)

Query: 74 VEECLRLNDIKYEEEQAIQLKIK 96
          ++  L+L    Y ++ A  L IK
Sbjct: 25 LQASLKL----YADDSAPALAIK 43



 Score = 26.5 bits (57), Expect = 6.8
 Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 11/31 (35%)

Query: 148 EK---RRLNTSYLTYVDRGLLDVRSSETPVV 175
           EK   ++L  S   Y D    D  S+  P +
Sbjct: 18  EKQALKKLQASLKLYAD----D--SA--PAL 40


>2q67_A Potassium channel protein; inverted teepee, helix bundle,
          tetramer, central cavity, ION binding, metal transport,
          membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A
          2q6a_A 2q69_A 2ahy_A 2ahz_A
          Length = 114

 Score = 29.4 bits (66), Expect = 0.89
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 10 ILSIKRILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVH 55
          +L++KR+L+A L  W+  +   L  + +  +I     G +    V 
Sbjct: 5  LLTLKRMLRACLRAWKDKEFQVLFVLTILTLIS----GTIFYSTVE 46


>3kg2_A Glutamate receptor 2; ION channel, membrane protein, alternative
           splicing, cell membrane, glycoprotein, ION transport,
           membrane; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
          Length = 823

 Score = 27.6 bits (60), Expect = 2.6
 Identities = 14/60 (23%), Positives = 23/60 (38%)

Query: 20  ILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVIFVSSLSLAIVAFGVEECLR 79
           +L + +       G  G           AL L  V  ++ I V  L LA++   +E C +
Sbjct: 749 LLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYK 808


>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS
           domain, hydrolase, metal-binding, transmembrane; 3.30A
           {Methanocaldococcus jannaschii}
          Length = 224

 Score = 26.1 bits (57), Expect = 8.3
 Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 15  RILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVIF 61
           RIL+AILS+      S   +  +   +  + +   GL  ++ + ++ 
Sbjct: 151 RILRAILSKKYGYLKSTKIAANIGKSLALI-MLLFGLLSMNIILILV 196


>3gb5_A IYD-1, iodotyrosine dehalogenase 1; iodide salvage, flavoprotein,
           FMN, membrane, NADP, oxidoreductase, transmembrane; HET:
           FMN; 2.00A {Mus musculus} PDB: 3gfd_A* 3gh8_A*
          Length = 259

 Score = 26.0 bits (56), Expect = 8.9
 Identities = 5/41 (12%), Positives = 11/41 (26%)

Query: 110 ACACLTQYDRYEVIYNFGGPMYGVIVPDFIHDLLDIPEEKR 150
           + AC       +           +     +  LL  P  ++
Sbjct: 182 SIACGLLLAALQNAGLVTVTTTPLNCGPRLRVLLGRPSHEK 222


>1f6g_A Voltage-gated potassium channel; integral membrane protein,
          cytoplasmic domains, proton transport, membrane
          protein; NMR {Streptomyces lividans} SCOP: f.14.1.1
          Length = 160

 Score = 25.7 bits (56), Expect = 9.2
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 6  MRNGILSIKRILKAILSR-WRKSKLSALGSVGVFFVIFSLPLGALGLY 52
          M +G+L+  R++K +L R       +A G+  V  VI  L  G+    
Sbjct: 4  MLSGLLA--RLVKLLLGRHGSALHWAAAGAATVLLVIVLL-AGSYLAV 48


>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
           alpha+beta, riken structural genomics/proteomics
           initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
           PDB: 2d1q_A* 2d1r_A* 2d1t_A*
          Length = 548

 Score = 26.0 bits (56), Expect = 9.2
 Identities = 7/28 (25%), Positives = 15/28 (53%)

Query: 206 YVDPLTPRDISFTQYEKHACALVNWLEK 233
           + + +T  D S+ +Y + +C L   L+ 
Sbjct: 44  FTNAVTGVDYSYAEYLEKSCCLGKALQN 71


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.323    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0435    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,183,552
Number of extensions: 99526
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 15
Length of query: 252
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 162
Effective length of database: 3,511,270
Effective search space: 568825740
Effective search space used: 568825740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.7 bits)