HHsearch alignment for GI: 254781190 and conserved domain: pfam09250
>pfam09250 Prim-Pol Bifunctional DNA primase/polymerase, N-terminal. Members of this family adopt a structure consisting of a core of antiparallel beta sheets. They are found in various bacterial hypothetical proteins, and have been shown to harbour both primase and polymerase activities.
Probab=99.78 E-value=6.8e-18 Score=122.21 Aligned_cols=117 Identities=15% Similarity=0.091 Sum_probs=77.4
Q ss_pred CHHHHHCCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHH--HHCCCCEEEECCCCCEEEEEECCCCCCCCCCC-
Q ss_conf 237875186168899707884888999954898467899999776--40898629867889539998447431243357-
Q gi|254781190|r 2 VATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQ--SCCGKPISRVGQAPKTLMLFRMQETNLKKQKS- 78 (233)
Q Consensus 2 va~~~~~~p~~giGi~~G~~s~~l~~iDiD~~d~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~lfr~~~~~~~~~~~- 78 (233)
T Consensus 37 i~~w~~~~p~~nigv~~g~--~~lvviDiD~~~~~~--~l~~l~~~~~~lp~t~~~~T~~gG~H~~fr~p~~~~~~~~~~ 112 (161)
T pfam09250 37 IRRWWARNPGANIGLPTGR--SGLVVLDVDTKAGGD--ALAALERAGGPLPPTLVVRTPSGGRHLYFRVPDGPELKRNLL 112 (161)
T ss_pred HHHHHHCCCCCCEEEECCC--CCEEEEECCCCCCHH--HHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCC
T ss_conf 9999860999528887089--857999576765448--999999854888886168889997799997788864367522
Q ss_pred --CCCCCCCEEEEECC-CEEEECCCCCCCCCCEEEECCCCCCCHHHCCC
Q ss_conf --77676635898458-32895366888888457421677688223676
Q gi|254781190|r 79 --EEKIQGHLEFLAYG-QQFVAYNIHPKTQRAYTWSIAPHALKVEELPL 124 (233)
Q Consensus 79 --~~~~~~~iEi~~~g-~q~V~~g~hp~Tg~~Y~W~~~~~~~~~~~lP~ 124 (233)
T Consensus 113 ~~~~~~~~gvDir~~g~~yvv~ppS~~~~g-~Y~w~~~-~~~~~~~~P~ 159 (161)
T pfam09250 113 FAKDGGGGGIDIRAGGGGYVVAPPSVHPGG-PYEWTGG-TPLPPAPAPE 159 (161)
T ss_pred CCCCCCCCCEEEECCCCCEEEECCCCCCCE-EEEEECC-CCCCCCCCCC
T ss_conf 102678998798538962899579537983-2898159-9888778988