HHsearch alignment for GI: 254781190 and conserved domain: pfam09250

>pfam09250 Prim-Pol Bifunctional DNA primase/polymerase, N-terminal. Members of this family adopt a structure consisting of a core of antiparallel beta sheets. They are found in various bacterial hypothetical proteins, and have been shown to harbour both primase and polymerase activities.
Probab=99.78  E-value=6.8e-18  Score=122.21  Aligned_cols=117  Identities=15%  Similarity=0.091  Sum_probs=77.4

Q ss_pred             CHHHHHCCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHH--HHCCCCEEEECCCCCEEEEEECCCCCCCCCCC-
Q ss_conf             237875186168899707884888999954898467899999776--40898629867889539998447431243357-
Q gi|254781190|r    2 VATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQ--SCCGKPISRVGQAPKTLMLFRMQETNLKKQKS-   78 (233)
Q Consensus         2 va~~~~~~p~~giGi~~G~~s~~l~~iDiD~~d~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~lfr~~~~~~~~~~~-   78 (233)
T Consensus        37 i~~w~~~~p~~nigv~~g~--~~lvviDiD~~~~~~--~l~~l~~~~~~lp~t~~~~T~~gG~H~~fr~p~~~~~~~~~~  112 (161)
T pfam09250        37 IRRWWARNPGANIGLPTGR--SGLVVLDVDTKAGGD--ALAALERAGGPLPPTLVVRTPSGGRHLYFRVPDGPELKRNLL  112 (161)
T ss_pred             HHHHHHCCCCCCEEEECCC--CCEEEEECCCCCCHH--HHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCC
T ss_conf             9999860999528887089--857999576765448--999999854888886168889997799997788864367522


Q ss_pred             --CCCCCCCEEEEECC-CEEEECCCCCCCCCCEEEECCCCCCCHHHCCC
Q ss_conf             --77676635898458-32895366888888457421677688223676
Q gi|254781190|r   79 --EEKIQGHLEFLAYG-QQFVAYNIHPKTQRAYTWSIAPHALKVEELPL  124 (233)
Q Consensus        79 --~~~~~~~iEi~~~g-~q~V~~g~hp~Tg~~Y~W~~~~~~~~~~~lP~  124 (233)
T Consensus       113 ~~~~~~~~gvDir~~g~~yvv~ppS~~~~g-~Y~w~~~-~~~~~~~~P~  159 (161)
T pfam09250       113 FAKDGGGGGIDIRAGGGGYVVAPPSVHPGG-PYEWTGG-TPLPPAPAPE  159 (161)
T ss_pred             CCCCCCCCCEEEECCCCCEEEECCCCCCCE-EEEEECC-CCCCCCCCCC
T ss_conf             102678998798538962899579537983-2898159-9888778988