HHsearch alignment of GI: 254781190 and MMDB domain: 1ro2_A_
>1ro2_A (A:) Hypothetical protein ORF904; DNA polymerase, primase, replication, polymerization, evolution of nucleic acid polymerizing enzymes; 1.60A {Sulfolobus islandicus}
Probab=99.78 E-value=9.5e-20 Score=132.51 Aligned_cols=135 Identities=11% Similarity=0.132 Sum_probs=89.9
Q ss_pred CHHHHHCCCCC-CEEEEECCCCCCEEEEEEECCCHHHHHHHHHH---HHHHCCCCEEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf 23787518616-88997078848889999548984678999997---764089862986788953999844743124335
Q gi|254781190|r 2 VATDVDHYVYN-GFGILCGIGTHPVYAFDVDVLDEQVVDRFNNE---FQSCCGKPISRVGQAPKTLMLFRMQETNLKKQK 77 (233)
Q Consensus 2 va~~~~~~p~~-giGi~~G~~s~~l~~iDiD~~d~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~lfr~~~~~~~~~~ 77 (233)
|..++..+|.+ ||||.||. .++++||+|. ......+..+ ...+..++.++++ ++++|+|||+|+....+..
T Consensus 46 i~~w~~~~p~~~nigi~~G~--~~~vviD~D~--~~g~~~~~~l~~~~~~l~~t~~~~T~-~gG~h~~f~~p~~~~~~~~ 120 (216)
T 1ro2_A 46 KQRFLKMIEEGYNYAIPGGQ--KGMVIMDFES--KEKLKAWIGESALEELCRKTLCTNTV-HGGIHIYVLSNDIPPHKIN 120 (216)
T ss_dssp HHHHHHHHHHTCEEEEESSG--GGEEEEEESC--HHHHHHHHCHHHHHHHHHHSCEEECT-TSCEEEEEECSCCCSSCCC
T ss_pred HHHHHHHCCCCCEEEEECCC--CCEEEEECCC--CCHHHHHHHHHHHHHCCCCCEEEECC-CCCEEEEEECCCCCCCCCC
T ss_conf 99999849975659996487--7789998888--52034442224566238886489858-9917999976888865315
Q ss_pred C--CCCCCCCEEEEECCCEEEECCC----CCCCCCCEEEECCCCC---CCHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 7--7767663589845832895366----8888884574216776---8822367689999999997544201
Q gi|254781190|r 78 S--EEKIQGHLEFLAYGQQFVAYNI----HPKTQRAYTWSIAPHA---LKVEELPLLTPDEVEYFFEFFDTIT 141 (233)
Q Consensus 78 ~--~~~~~~~iEi~~~g~q~V~~g~----hp~Tg~~Y~W~~~~~~---~~~~~lP~~~~~~l~~~~~~~~~~~ 141 (233)
. ......+||||+.|+|+|+||| ||.||+.|+|..++.. .+...++.+....+..+........
T Consensus 121 ~~~~~~~~~gvdir~~g~~vV~ppS~~~~~~~~g~~Y~w~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~ 193 (216)
T 1ro2_A 121 PLFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQNYTTCYTLYNELKEISKVDLKSLLRFLAEKG 193 (216)
T ss_dssp CSEESSSSEEEEEECTTCEEECTTCEEEGGGCCSTTCTTTTCSCEEECEESSSCCCCEECCHHHHHHHHHHHH
T ss_pred CCEECCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 5443278842889836988996361046646787766524566556676743335554255367899999877