HHsearch alignment of GI: 254781190 and MMDB domain: 1ro2_A_

>1ro2_A (A:) Hypothetical protein ORF904; DNA polymerase, primase, replication, polymerization, evolution of nucleic acid polymerizing enzymes; 1.60A {Sulfolobus islandicus}
Probab=99.78  E-value=9.5e-20  Score=132.51  Aligned_cols=135  Identities=11%  Similarity=0.132  Sum_probs=89.9

Q ss_pred             CHHHHHCCCCC-CEEEEECCCCCCEEEEEEECCCHHHHHHHHHH---HHHHCCCCEEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf             23787518616-88997078848889999548984678999997---764089862986788953999844743124335
Q gi|254781190|r    2 VATDVDHYVYN-GFGILCGIGTHPVYAFDVDVLDEQVVDRFNNE---FQSCCGKPISRVGQAPKTLMLFRMQETNLKKQK   77 (233)
Q Consensus         2 va~~~~~~p~~-giGi~~G~~s~~l~~iDiD~~d~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~lfr~~~~~~~~~~   77 (233)
                      |..++..+|.+ ||||.||.  .++++||+|.  ......+..+   ...+..++.++++ ++++|+|||+|+....+..
T Consensus        46 i~~w~~~~p~~~nigi~~G~--~~~vviD~D~--~~g~~~~~~l~~~~~~l~~t~~~~T~-~gG~h~~f~~p~~~~~~~~  120 (216)
T 1ro2_A           46 KQRFLKMIEEGYNYAIPGGQ--KGMVIMDFES--KEKLKAWIGESALEELCRKTLCTNTV-HGGIHIYVLSNDIPPHKIN  120 (216)
T ss_dssp             HHHHHHHHHHTCEEEEESSG--GGEEEEEESC--HHHHHHHHCHHHHHHHHHHSCEEECT-TSCEEEEEECSCCCSSCCC
T ss_pred             HHHHHHHCCCCCEEEEECCC--CCEEEEECCC--CCHHHHHHHHHHHHHCCCCCEEEECC-CCCEEEEEECCCCCCCCCC
T ss_conf             99999849975659996487--7789998888--52034442224566238886489858-9917999976888865315


Q ss_pred             C--CCCCCCCEEEEECCCEEEECCC----CCCCCCCEEEECCCCC---CCHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf             7--7767663589845832895366----8888884574216776---8822367689999999997544201
Q gi|254781190|r   78 S--EEKIQGHLEFLAYGQQFVAYNI----HPKTQRAYTWSIAPHA---LKVEELPLLTPDEVEYFFEFFDTIT  141 (233)
Q Consensus        78 ~--~~~~~~~iEi~~~g~q~V~~g~----hp~Tg~~Y~W~~~~~~---~~~~~lP~~~~~~l~~~~~~~~~~~  141 (233)
                      .  ......+||||+.|+|+|+|||    ||.||+.|+|..++..   .+...++.+....+..+........
T Consensus       121 ~~~~~~~~~gvdir~~g~~vV~ppS~~~~~~~~g~~Y~w~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~  193 (216)
T 1ro2_A          121 PLFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQNYTTCYTLYNELKEISKVDLKSLLRFLAEKG  193 (216)
T ss_dssp             CSEESSSSEEEEEECTTCEEECTTCEEEGGGCCSTTCTTTTCSCEEECEESSSCCCCEECCHHHHHHHHHHHH
T ss_pred             CCEECCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             5443278842889836988996361046646787766524566556676743335554255367899999877