HHSEARCH alignment of GI: 254781190 and SCOP domain: d1ro0a_

Alignment
>d1ro0a_ d.264.1.2 (A:) Bifunctional DNA primase/polymerase N-terminal domain {Archaeon Sulfolobus islandicus [TaxId: 43080]}
Probab=99.70  E-value=4.4e-18  Score=120.68  Aligned_cols=105  Identities=10%  Similarity=0.066  Sum_probs=69.8

Q ss_pred             HHHHHCCCCC-CEEEEECCCCCCEEEEEEECCCHHHHHHHH---HHHHHHCCCCEEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf             3787518616-889970788488899995489846789999---977640898629867889539998447431243357
Q gi|254781190|r    3 ATDVDHYVYN-GFGILCGIGTHPVYAFDVDVLDEQVVDRFN---NEFQSCCGKPISRVGQAPKTLMLFRMQETNLKKQKS   78 (233)
Q Consensus         3 a~~~~~~p~~-giGi~~G~~s~~l~~iDiD~~d~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~lfr~~~~~~~~~~~   78 (233)
                      ..+++++|.+ ||||+||. + |+++||||..  .....+.   .+...+..+.+++++ .+++|+||+.++.+..+...
T Consensus        47 ~~w~~~~p~~~NiGi~~G~-s-glVViDiD~~--~~~~~~~~~~~l~~~~~~T~~v~Tp-sGG~HlYf~~~e~p~~~~~~  121 (210)
T d1ro0a_          47 QRFLKMIEEGYNYAIPGGQ-K-GMVIMDFESK--EKLKAWIGESALEELCRKTLCTNTV-HGGIHIYVLSNDIPPHKINP  121 (210)
T ss_dssp             HHHHHHHHTTCEEEEESSG-G-GEEEEEESCH--HHHHHHHCHHHHHHHHHHSCEEECT-TSCEEEEEECSSCCSSCCCC
T ss_pred             HHHHHHCCCCCEEEEECCC-C-CEEEEECCCC--HHHHHHHHHHHHHCCCCCCEEEECC-CCCEEEEEECCCCCCCCCCC
T ss_conf             9998749875548996377-7-7899987882--3455541004554348887599879-99189999878877542134


Q ss_pred             C--CCCCCCEEEEECCCEEEECCC-----CCCC-CCCEEEEC
Q ss_conf             7--767663589845832895366-----8888-88457421
Q gi|254781190|r   79 E--EKIQGHLEFLAYGQQFVAYNI-----HPKT-QRAYTWSI  112 (233)
Q Consensus        79 ~--~~~~~~iEi~~~g~q~V~~g~-----hp~T-g~~Y~W~~  112 (233)
                      .  ......|||++.|+|||+|||     |++| +.+|+|.+
T Consensus       122 ~~~~~g~~~iDir~~g~yVv~PpS~~~h~h~~~~~~~~~~~~  163 (210)
T d1ro0a_         122 LFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQN  163 (210)
T ss_dssp             SEEETTEEEEEEECTTCEEECTTCEEEGGGCCSTTCTTTTCS
T ss_pred             CEECCCCCEEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             466178735889700898995574246635677777641555


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Prim-pol domain
superfamily: Prim-pol domain
family: Bifunctional DNA primase/polymerase N-terminal domain
domain: Bifunctional DNA primase/polymerase N-terminal domain
species: Archaeon Sulfolobus islandicus [TaxId: 43080]