Query gi|254781190|ref|YP_003065603.1| hypothetical protein CLIBASIA_05485 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 233 No_of_seqs 140 out of 347 Neff 7.7 Searched_HMMs 13730 Date Wed Jun 1 11:45:29 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781190.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1ro0a_ d.264.1.2 (A:) Bifunct 99.7 4.4E-18 3.2E-22 120.7 4.7 105 3-112 47-163 (210) 2 d2ia9a1 d.366.1.1 (A:1-92) Put 8.3 46 0.0034 11.0 2.2 21 90-110 39-59 (92) 3 d2nqda1 b.1.26.1 (A:3-110) Cha 6.2 59 0.0043 10.4 2.0 15 96-112 22-36 (108) 4 d2c34a1 b.1.26.1 (A:1-113) Inh 5.7 63 0.0046 10.2 3.8 28 83-112 11-38 (113) 5 d2i9xa1 d.366.1.1 (A:1-84) Put 4.5 80 0.0058 9.6 2.2 20 90-109 39-58 (84) 6 d2f76x1 a.61.1.3 (X:1-94) Maso 4.5 81 0.0059 9.6 2.3 24 174-198 42-65 (94) 7 d1v7wa2 b.30.5.3 (A:1-270) Chi 4.0 92 0.0067 9.3 4.4 11 180-190 207-217 (270) 8 d1t4aa_ d.284.1.1 (A:) PurS su 3.9 95 0.0069 9.2 4.9 28 25-52 42-69 (80) 9 d1xzpa3 d.250.1.2 (A:1-117) Tr 3.8 1E+02 0.0073 9.1 2.7 74 14-97 5-88 (117) 10 d1vpsa_ b.121.6.1 (A:) Polyoma 3.7 1E+02 0.0075 9.0 1.0 20 11-30 235-254 (285) No 1 >d1ro0a_ d.264.1.2 (A:) Bifunctional DNA primase/polymerase N-terminal domain {Archaeon Sulfolobus islandicus [TaxId: 43080]} Probab=99.70 E-value=4.4e-18 Score=120.68 Aligned_cols=105 Identities=10% Similarity=0.066 Sum_probs=69.8 Q ss_pred HHHHHCCCCC-CEEEEECCCCCCEEEEEEECCCHHHHHHHH---HHHHHHCCCCEEEECCCCCEEEEEECCCCCCCCCCC Q ss_conf 3787518616-889970788488899995489846789999---977640898629867889539998447431243357 Q gi|254781190|r 3 ATDVDHYVYN-GFGILCGIGTHPVYAFDVDVLDEQVVDRFN---NEFQSCCGKPISRVGQAPKTLMLFRMQETNLKKQKS 78 (233) Q Consensus 3 a~~~~~~p~~-giGi~~G~~s~~l~~iDiD~~d~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~lfr~~~~~~~~~~~ 78 (233) ..+++++|.+ ||||+||. + |+++||||.. .....+. .+...+..+.+++++ .+++|+||+.++.+..+... T Consensus 47 ~~w~~~~p~~~NiGi~~G~-s-glVViDiD~~--~~~~~~~~~~~l~~~~~~T~~v~Tp-sGG~HlYf~~~e~p~~~~~~ 121 (210) T d1ro0a_ 47 QRFLKMIEEGYNYAIPGGQ-K-GMVIMDFESK--EKLKAWIGESALEELCRKTLCTNTV-HGGIHIYVLSNDIPPHKINP 121 (210) T ss_dssp HHHHHHHHTTCEEEEESSG-G-GEEEEEESCH--HHHHHHHCHHHHHHHHHHSCEEECT-TSCEEEEEECSSCCSSCCCC T ss_pred HHHHHHCCCCCEEEEECCC-C-CEEEEECCCC--HHHHHHHHHHHHHCCCCCCEEEECC-CCCEEEEEECCCCCCCCCCC T ss_conf 9998749875548996377-7-7899987882--3455541004554348887599879-99189999878877542134 Q ss_pred C--CCCCCCEEEEECCCEEEECCC-----CCCC-CCCEEEEC Q ss_conf 7--767663589845832895366-----8888-88457421 Q gi|254781190|r 79 E--EKIQGHLEFLAYGQQFVAYNI-----HPKT-QRAYTWSI 112 (233) Q Consensus 79 ~--~~~~~~iEi~~~g~q~V~~g~-----hp~T-g~~Y~W~~ 112 (233) . ......|||++.|+|||+||| |++| +.+|+|.+ T Consensus 122 ~~~~~g~~~iDir~~g~yVv~PpS~~~h~h~~~~~~~~~~~~ 163 (210) T d1ro0a_ 122 LFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQN 163 (210) T ss_dssp SEEETTEEEEEEECTTCEEECTTCEEEGGGCCSTTCTTTTCS T ss_pred CEECCCCCEEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCC T ss_conf 466178735889700898995574246635677777641555 No 2 >d2ia9a1 d.366.1.1 (A:1-92) Putative septation protein SpoVG {Bacillus subtilis [TaxId: 1423]} Probab=8.30 E-value=46 Score=11.02 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=15.7 Q ss_pred ECCCEEEECCCCCCCCCCEEE Q ss_conf 458328953668888884574 Q gi|254781190|r 90 AYGQQFVAYNIHPKTQRAYTW 110 (233) Q Consensus 90 ~~g~q~V~~g~hp~Tg~~Y~W 110 (233) +..|.+|++||.....+.|+= T Consensus 39 g~~GlFVaMPs~k~~~g~y~D 59 (92) T d2ia9a1 39 GNNGLFVAMPSKRTPDGEFRD 59 (92) T ss_dssp ETTEEEEECCEEECTTSCEEE T ss_pred CCCCCEEECCCCCCCCCCEEE T ss_conf 799759989775999998989 No 3 >d2nqda1 b.1.26.1 (A:3-110) Chagasin {Trypanosoma cruzi [TaxId: 5693]} Probab=6.17 E-value=59 Score=10.41 Aligned_cols=15 Identities=20% Similarity=0.658 Sum_probs=9.1 Q ss_pred EECCCCCCCCCCEEEEC Q ss_conf 95366888888457421 Q gi|254781190|r 96 VAYNIHPKTQRAYTWSI 112 (233) Q Consensus 96 V~~g~hp~Tg~~Y~W~~ 112 (233) |--+++|.|| |+|.- T Consensus 22 I~L~~NPtTG--Y~W~~ 36 (108) T d2nqda1 22 IQLPSNPTTG--FAWYF 36 (108) T ss_dssp EEEEECGGGT--CEEEB T ss_pred EEECCCCCCC--EEEEE T ss_conf 9968889888--68996 No 4 >d2c34a1 b.1.26.1 (A:1-113) Inhibitor of cysteine peptidases, ICP {Leishmania mexicana [TaxId: 5665]} Probab=5.68 E-value=63 Score=10.24 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=15.2 Q ss_pred CCCEEEEECCCEEEECCCCCCCCCCEEEEC Q ss_conf 663589845832895366888888457421 Q gi|254781190|r 83 QGHLEFLAYGQQFVAYNIHPKTQRAYTWSI 112 (233) Q Consensus 83 ~~~iEi~~~g~q~V~~g~hp~Tg~~Y~W~~ 112 (233) ...|.+.....-.|--++.|.|| |+|.- T Consensus 11 ~~tI~v~~Ge~~~I~L~~NPtTG--Y~W~~ 38 (113) T d2c34a1 11 DKWVDTHVGKTTEIHLKGNPTTG--YMWTR 38 (113) T ss_dssp CCCEEECSSCCEEEEEECCTTSS--CEEEE T ss_pred CCEEEEECCCEEEEEECCCCCCC--EEEEE T ss_conf 93899938999999958999868--18998 No 5 >d2i9xa1 d.366.1.1 (A:1-84) Putative septation protein SpoVG {Staphylococcus epidermidis [TaxId: 1282]} Probab=4.50 E-value=80 Score=9.64 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=14.7 Q ss_pred ECCCEEEECCCCCCCCCCEE Q ss_conf 45832895366888888457 Q gi|254781190|r 90 AYGQQFVAYNIHPKTQRAYT 109 (233) Q Consensus 90 ~~g~q~V~~g~hp~Tg~~Y~ 109 (233) +..|.+|++||.....+.|+ T Consensus 39 g~~GlFVamPs~k~~~g~y~ 58 (84) T d2i9xa1 39 GNSGLFVAMPSKRTPDGEFR 58 (84) T ss_dssp ETTEEEEECCEEECTTSCEE T ss_pred CCCCCEEECCCCCCCCCCEE T ss_conf 89976998977499999899 No 6 >d2f76x1 a.61.1.3 (X:1-94) Mason-Pfizer monkey virus matrix protein {Simian Mason-Pfizer virus [TaxId: 11855]} Probab=4.47 E-value=81 Score=9.62 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=16.0 Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 9735800135674579999987630 Q gi|254781190|r 174 LSCFGEEFYNGSHDEWIPVVMAIHY 198 (233) Q Consensus 174 L~~i~~~~~~~dyd~W~~vg~AL~~ 198 (233) ..-++.+. ..+-.+|.+||..|+. T Consensus 42 cPWFp~~G-tl~~~~W~kvG~~l~~ 65 (94) T d2f76x1 42 CPWFPQEG-TIDIKRWRRVGDCFQD 65 (94) T ss_dssp CCCCCCCS-SCHHHHHHHHHHHHHH T ss_pred CCCCCCCC-CCCHHHHHHHHHHHHH T ss_conf 98854558-7169999999999999 No 7 >d1v7wa2 b.30.5.3 (A:1-270) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]} Probab=4.03 E-value=92 Score=9.30 Aligned_cols=11 Identities=27% Similarity=0.872 Sum_probs=5.0 Q ss_pred CCCCCCHHHHH Q ss_conf 01356745799 Q gi|254781190|r 180 EFYNGSHDEWI 190 (233) Q Consensus 180 ~~~~~dyd~W~ 190 (233) ..++.|+...+ T Consensus 207 ~s~~tdR~~Fi 217 (270) T d1v7wa2 207 DSYDGQRDRFL 217 (270) T ss_dssp SEEEEEHHHHH T ss_pred CCEECCHHHEE T ss_conf 51788679805 No 8 >d1t4aa_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Bacillus subtilis [TaxId: 1423]} Probab=3.92 E-value=95 Score=9.21 Aligned_cols=28 Identities=4% Similarity=0.023 Sum_probs=13.3 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHCCCC Q ss_conf 8999954898467899999776408986 Q gi|254781190|r 25 VYAFDVDVLDEQVVDRFNNEFQSCCGKP 52 (233) Q Consensus 25 l~~iDiD~~d~~~~~~~~~~~~~~~~~~ 52 (233) .+-+.+|..++.+.....++|..++..+ T Consensus 42 ~i~l~i~~~~~~a~~~v~~~c~~lLaNp 69 (80) T d1t4aa_ 42 YMELTIEKSDRDLDVLVKEMCEKLLANT 69 (80) T ss_dssp EEEEEECCCSSCHHHHHHHHHHHTTCCT T ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCCC T ss_conf 9999975984999999999999864975 No 9 >d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]} Probab=3.77 E-value=1e+02 Score=9.09 Aligned_cols=74 Identities=5% Similarity=0.125 Sum_probs=0.0 Q ss_pred EEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEE----------CCCCCEEEEEECCCCCCCCCCCCCCCC Q ss_conf 8997078848889999548984678999997764089862986----------788953999844743124335777676 Q gi|254781190|r 14 FGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRV----------GQAPKTLMLFRMQETNLKKQKSEEKIQ 83 (233) Q Consensus 14 iGi~~G~~s~~l~~iDiD~~d~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~lfr~~~~~~~~~~~~~~~~ 83 (233) +.+.|++..+++-+|=|= ++.+...+..+........+.+. .-.-...++|+.|..+-+... T Consensus 5 ~AlaTp~G~saIaVIRiS--G~~a~~i~~~~~~~~~~~~~r~~~~~~i~~~~~~iD~~lv~~f~~P~S~TGEd~------ 76 (117) T d1xzpa3 5 VAVATPPGKGAIAILRLS--GPDSWKIVQKHLRTRSKIVPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDM------ 76 (117) T ss_dssp EEECSCSSSCSCEEEEEE--SSSHHHHHHTTEEESSCCCBTBCEEEEECCSSCCCCEEEEEEECTTSSSSSSCE------ T ss_pred EEECCCCCCCEEEEEEEE--CCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCE------ T ss_conf 995688876569999999--951789999983766445550578501122223467632798247667400026------ Q ss_pred CCEEEEECCCEEEE Q ss_conf 63589845832895 Q gi|254781190|r 84 GHLEFLAYGQQFVA 97 (233) Q Consensus 84 ~~iEi~~~g~q~V~ 97 (233) +||-++|...|+ T Consensus 77 --vEi~~HG~~~i~ 88 (117) T d1xzpa3 77 --VEVMCHGGPLVV 88 (117) T ss_dssp --EEEEECSCHHHH T ss_pred --EEEEECCCHHHH T ss_conf --999861651489 No 10 >d1vpsa_ b.121.6.1 (A:) Polyomavirus coat proteins {Murine polyomavirus, strain small-plaque 16 [TaxId: 10634]} Probab=3.69 E-value=1e+02 Score=9.03 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=0.0 Q ss_pred CCCEEEEECCCCCCEEEEEE Q ss_conf 16889970788488899995 Q gi|254781190|r 11 YNGFGILCGIGTHPVYAFDV 30 (233) Q Consensus 11 ~~giGi~~G~~s~~l~~iDi 30 (233) .+|||.+|=...-.|-+.|| T Consensus 235 ENGVGpLCkgd~LyisaaDi 254 (285) T d1vpsa_ 235 ENGVGPLCKGEGLYLSCVDI 254 (285) T ss_dssp TTSCCCEESSSEEEEEEEEE T ss_pred CCCCCCCCCCCCEEEEEEHC T ss_conf 78854667178379982051 Done!