Query         gi|254781190|ref|YP_003065603.1| hypothetical protein CLIBASIA_05485 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 233
No_of_seqs    140 out of 347
Neff          7.7 
Searched_HMMs 13730
Date          Wed Jun  1 11:45:29 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781190.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1ro0a_ d.264.1.2 (A:) Bifunct  99.7 4.4E-18 3.2E-22  120.7   4.7  105    3-112    47-163 (210)
  2 d2ia9a1 d.366.1.1 (A:1-92) Put   8.3      46  0.0034   11.0   2.2   21   90-110    39-59  (92)
  3 d2nqda1 b.1.26.1 (A:3-110) Cha   6.2      59  0.0043   10.4   2.0   15   96-112    22-36  (108)
  4 d2c34a1 b.1.26.1 (A:1-113) Inh   5.7      63  0.0046   10.2   3.8   28   83-112    11-38  (113)
  5 d2i9xa1 d.366.1.1 (A:1-84) Put   4.5      80  0.0058    9.6   2.2   20   90-109    39-58  (84)
  6 d2f76x1 a.61.1.3 (X:1-94) Maso   4.5      81  0.0059    9.6   2.3   24  174-198    42-65  (94)
  7 d1v7wa2 b.30.5.3 (A:1-270) Chi   4.0      92  0.0067    9.3   4.4   11  180-190   207-217 (270)
  8 d1t4aa_ d.284.1.1 (A:) PurS su   3.9      95  0.0069    9.2   4.9   28   25-52     42-69  (80)
  9 d1xzpa3 d.250.1.2 (A:1-117) Tr   3.8   1E+02  0.0073    9.1   2.7   74   14-97      5-88  (117)
 10 d1vpsa_ b.121.6.1 (A:) Polyoma   3.7   1E+02  0.0075    9.0   1.0   20   11-30    235-254 (285)

No 1  
>d1ro0a_ d.264.1.2 (A:) Bifunctional DNA primase/polymerase N-terminal domain {Archaeon Sulfolobus islandicus [TaxId: 43080]}
Probab=99.70  E-value=4.4e-18  Score=120.68  Aligned_cols=105  Identities=10%  Similarity=0.066  Sum_probs=69.8

Q ss_pred             HHHHHCCCCC-CEEEEECCCCCCEEEEEEECCCHHHHHHHH---HHHHHHCCCCEEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf             3787518616-889970788488899995489846789999---977640898629867889539998447431243357
Q gi|254781190|r    3 ATDVDHYVYN-GFGILCGIGTHPVYAFDVDVLDEQVVDRFN---NEFQSCCGKPISRVGQAPKTLMLFRMQETNLKKQKS   78 (233)
Q Consensus         3 a~~~~~~p~~-giGi~~G~~s~~l~~iDiD~~d~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~lfr~~~~~~~~~~~   78 (233)
                      ..+++++|.+ ||||+||. + |+++||||..  .....+.   .+...+..+.+++++ .+++|+||+.++.+..+...
T Consensus        47 ~~w~~~~p~~~NiGi~~G~-s-glVViDiD~~--~~~~~~~~~~~l~~~~~~T~~v~Tp-sGG~HlYf~~~e~p~~~~~~  121 (210)
T d1ro0a_          47 QRFLKMIEEGYNYAIPGGQ-K-GMVIMDFESK--EKLKAWIGESALEELCRKTLCTNTV-HGGIHIYVLSNDIPPHKINP  121 (210)
T ss_dssp             HHHHHHHHTTCEEEEESSG-G-GEEEEEESCH--HHHHHHHCHHHHHHHHHHSCEEECT-TSCEEEEEECSSCCSSCCCC
T ss_pred             HHHHHHCCCCCEEEEECCC-C-CEEEEECCCC--HHHHHHHHHHHHHCCCCCCEEEECC-CCCEEEEEECCCCCCCCCCC
T ss_conf             9998749875548996377-7-7899987882--3455541004554348887599879-99189999878877542134


Q ss_pred             C--CCCCCCEEEEECCCEEEECCC-----CCCC-CCCEEEEC
Q ss_conf             7--767663589845832895366-----8888-88457421
Q gi|254781190|r   79 E--EKIQGHLEFLAYGQQFVAYNI-----HPKT-QRAYTWSI  112 (233)
Q Consensus        79 ~--~~~~~~iEi~~~g~q~V~~g~-----hp~T-g~~Y~W~~  112 (233)
                      .  ......|||++.|+|||+|||     |++| +.+|+|.+
T Consensus       122 ~~~~~g~~~iDir~~g~yVv~PpS~~~h~h~~~~~~~~~~~~  163 (210)
T d1ro0a_         122 LFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQN  163 (210)
T ss_dssp             SEEETTEEEEEEECTTCEEECTTCEEEGGGCCSTTCTTTTCS
T ss_pred             CEECCCCCEEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             466178735889700898995574246635677777641555


No 2  
>d2ia9a1 d.366.1.1 (A:1-92) Putative septation protein SpoVG {Bacillus subtilis [TaxId: 1423]}
Probab=8.30  E-value=46  Score=11.02  Aligned_cols=21  Identities=14%  Similarity=0.102  Sum_probs=15.7

Q ss_pred             ECCCEEEECCCCCCCCCCEEE
Q ss_conf             458328953668888884574
Q gi|254781190|r   90 AYGQQFVAYNIHPKTQRAYTW  110 (233)
Q Consensus        90 ~~g~q~V~~g~hp~Tg~~Y~W  110 (233)
                      +..|.+|++||.....+.|+=
T Consensus        39 g~~GlFVaMPs~k~~~g~y~D   59 (92)
T d2ia9a1          39 GNNGLFVAMPSKRTPDGEFRD   59 (92)
T ss_dssp             ETTEEEEECCEEECTTSCEEE
T ss_pred             CCCCCEEECCCCCCCCCCEEE
T ss_conf             799759989775999998989


No 3  
>d2nqda1 b.1.26.1 (A:3-110) Chagasin {Trypanosoma cruzi [TaxId: 5693]}
Probab=6.17  E-value=59  Score=10.41  Aligned_cols=15  Identities=20%  Similarity=0.658  Sum_probs=9.1

Q ss_pred             EECCCCCCCCCCEEEEC
Q ss_conf             95366888888457421
Q gi|254781190|r   96 VAYNIHPKTQRAYTWSI  112 (233)
Q Consensus        96 V~~g~hp~Tg~~Y~W~~  112 (233)
                      |--+++|.||  |+|.-
T Consensus        22 I~L~~NPtTG--Y~W~~   36 (108)
T d2nqda1          22 IQLPSNPTTG--FAWYF   36 (108)
T ss_dssp             EEEEECGGGT--CEEEB
T ss_pred             EEECCCCCCC--EEEEE
T ss_conf             9968889888--68996


No 4  
>d2c34a1 b.1.26.1 (A:1-113) Inhibitor of cysteine peptidases, ICP {Leishmania mexicana [TaxId: 5665]}
Probab=5.68  E-value=63  Score=10.24  Aligned_cols=28  Identities=14%  Similarity=0.240  Sum_probs=15.2

Q ss_pred             CCCEEEEECCCEEEECCCCCCCCCCEEEEC
Q ss_conf             663589845832895366888888457421
Q gi|254781190|r   83 QGHLEFLAYGQQFVAYNIHPKTQRAYTWSI  112 (233)
Q Consensus        83 ~~~iEi~~~g~q~V~~g~hp~Tg~~Y~W~~  112 (233)
                      ...|.+.....-.|--++.|.||  |+|.-
T Consensus        11 ~~tI~v~~Ge~~~I~L~~NPtTG--Y~W~~   38 (113)
T d2c34a1          11 DKWVDTHVGKTTEIHLKGNPTTG--YMWTR   38 (113)
T ss_dssp             CCCEEECSSCCEEEEEECCTTSS--CEEEE
T ss_pred             CCEEEEECCCEEEEEECCCCCCC--EEEEE
T ss_conf             93899938999999958999868--18998


No 5  
>d2i9xa1 d.366.1.1 (A:1-84) Putative septation protein SpoVG {Staphylococcus epidermidis [TaxId: 1282]}
Probab=4.50  E-value=80  Score=9.64  Aligned_cols=20  Identities=15%  Similarity=0.194  Sum_probs=14.7

Q ss_pred             ECCCEEEECCCCCCCCCCEE
Q ss_conf             45832895366888888457
Q gi|254781190|r   90 AYGQQFVAYNIHPKTQRAYT  109 (233)
Q Consensus        90 ~~g~q~V~~g~hp~Tg~~Y~  109 (233)
                      +..|.+|++||.....+.|+
T Consensus        39 g~~GlFVamPs~k~~~g~y~   58 (84)
T d2i9xa1          39 GNSGLFVAMPSKRTPDGEFR   58 (84)
T ss_dssp             ETTEEEEECCEEECTTSCEE
T ss_pred             CCCCCEEECCCCCCCCCCEE
T ss_conf             89976998977499999899


No 6  
>d2f76x1 a.61.1.3 (X:1-94) Mason-Pfizer monkey virus matrix protein {Simian Mason-Pfizer virus [TaxId: 11855]}
Probab=4.47  E-value=81  Score=9.62  Aligned_cols=24  Identities=17%  Similarity=0.092  Sum_probs=16.0

Q ss_pred             HHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             9735800135674579999987630
Q gi|254781190|r  174 LSCFGEEFYNGSHDEWIPVVMAIHY  198 (233)
Q Consensus       174 L~~i~~~~~~~dyd~W~~vg~AL~~  198 (233)
                      ..-++.+. ..+-.+|.+||..|+.
T Consensus        42 cPWFp~~G-tl~~~~W~kvG~~l~~   65 (94)
T d2f76x1          42 CPWFPQEG-TIDIKRWRRVGDCFQD   65 (94)
T ss_dssp             CCCCCCCS-SCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCC-CCCHHHHHHHHHHHHH
T ss_conf             98854558-7169999999999999


No 7  
>d1v7wa2 b.30.5.3 (A:1-270) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]}
Probab=4.03  E-value=92  Score=9.30  Aligned_cols=11  Identities=27%  Similarity=0.872  Sum_probs=5.0

Q ss_pred             CCCCCCHHHHH
Q ss_conf             01356745799
Q gi|254781190|r  180 EFYNGSHDEWI  190 (233)
Q Consensus       180 ~~~~~dyd~W~  190 (233)
                      ..++.|+...+
T Consensus       207 ~s~~tdR~~Fi  217 (270)
T d1v7wa2         207 DSYDGQRDRFL  217 (270)
T ss_dssp             SEEEEEHHHHH
T ss_pred             CCEECCHHHEE
T ss_conf             51788679805


No 8  
>d1t4aa_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Bacillus subtilis [TaxId: 1423]}
Probab=3.92  E-value=95  Score=9.21  Aligned_cols=28  Identities=4%  Similarity=0.023  Sum_probs=13.3

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf             8999954898467899999776408986
Q gi|254781190|r   25 VYAFDVDVLDEQVVDRFNNEFQSCCGKP   52 (233)
Q Consensus        25 l~~iDiD~~d~~~~~~~~~~~~~~~~~~   52 (233)
                      .+-+.+|..++.+.....++|..++..+
T Consensus        42 ~i~l~i~~~~~~a~~~v~~~c~~lLaNp   69 (80)
T d1t4aa_          42 YMELTIEKSDRDLDVLVKEMCEKLLANT   69 (80)
T ss_dssp             EEEEEECCCSSCHHHHHHHHHHHTTCCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf             9999975984999999999999864975


No 9  
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]}
Probab=3.77  E-value=1e+02  Score=9.09  Aligned_cols=74  Identities=5%  Similarity=0.125  Sum_probs=0.0

Q ss_pred             EEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEE----------CCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             8997078848889999548984678999997764089862986----------788953999844743124335777676
Q gi|254781190|r   14 FGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRV----------GQAPKTLMLFRMQETNLKKQKSEEKIQ   83 (233)
Q Consensus        14 iGi~~G~~s~~l~~iDiD~~d~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~lfr~~~~~~~~~~~~~~~~   83 (233)
                      +.+.|++..+++-+|=|=  ++.+...+..+........+.+.          .-.-...++|+.|..+-+...      
T Consensus         5 ~AlaTp~G~saIaVIRiS--G~~a~~i~~~~~~~~~~~~~r~~~~~~i~~~~~~iD~~lv~~f~~P~S~TGEd~------   76 (117)
T d1xzpa3           5 VAVATPPGKGAIAILRLS--GPDSWKIVQKHLRTRSKIVPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDM------   76 (117)
T ss_dssp             EEECSCSSSCSCEEEEEE--SSSHHHHHHTTEEESSCCCBTBCEEEEECCSSCCCCEEEEEEECTTSSSSSSCE------
T ss_pred             EEECCCCCCCEEEEEEEE--CCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCE------
T ss_conf             995688876569999999--951789999983766445550578501122223467632798247667400026------


Q ss_pred             CCEEEEECCCEEEE
Q ss_conf             63589845832895
Q gi|254781190|r   84 GHLEFLAYGQQFVA   97 (233)
Q Consensus        84 ~~iEi~~~g~q~V~   97 (233)
                        +||-++|...|+
T Consensus        77 --vEi~~HG~~~i~   88 (117)
T d1xzpa3          77 --VEVMCHGGPLVV   88 (117)
T ss_dssp             --EEEEECSCHHHH
T ss_pred             --EEEEECCCHHHH
T ss_conf             --999861651489


No 10 
>d1vpsa_ b.121.6.1 (A:) Polyomavirus coat proteins {Murine polyomavirus, strain small-plaque 16 [TaxId: 10634]}
Probab=3.69  E-value=1e+02  Score=9.03  Aligned_cols=20  Identities=30%  Similarity=0.386  Sum_probs=0.0

Q ss_pred             CCCEEEEECCCCCCEEEEEE
Q ss_conf             16889970788488899995
Q gi|254781190|r   11 YNGFGILCGIGTHPVYAFDV   30 (233)
Q Consensus        11 ~~giGi~~G~~s~~l~~iDi   30 (233)
                      .+|||.+|=...-.|-+.||
T Consensus       235 ENGVGpLCkgd~LyisaaDi  254 (285)
T d1vpsa_         235 ENGVGPLCKGEGLYLSCVDI  254 (285)
T ss_dssp             TTSCCCEESSSEEEEEEEEE
T ss_pred             CCCCCCCCCCCCEEEEEEHC
T ss_conf             78854667178379982051


Done!