BLAST/PSIBLAST alignment of GI: 254781190 and GI: 41179390 at iteration 1
>gi|41179390|ref|NP_958698.1| Bbp29 [Bordetella phage BPP-1] Length = 854
>gi|45569522|ref|NP_996591.1| primase [Bordetella phage BMP-1] Length = 854
>gi|45580773|ref|NP_996639.1| primase [Bordetella phage BIP-1] Length = 854
>gi|40950129|gb|AAR97695.1| Bbp29 [Bordetella phage BPP-1] Length = 854
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 78/250 (31%), Positives = 110/250 (44%), Gaps = 24/250 (9%)
Query: 3 ATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKT 62
A D+ Y +G G+LCG G PV A DVD D ++ RF Q G RVG APK
Sbjct: 41 AADLTRYPEHGVGVLCGQGAQPVVAIDVDTTDAELAARFVAWCQEHLGATCERVGNAPKI 100
Query: 63 LMLFRMQETNLKKQKSE--EKIQG---HLEFLAYGQQFVAYNIHPKTQRAYTWSI---AP 114
L+ +R + K E + G LE L GQQFVAY++HP T R Y W+
Sbjct: 101 LLAYRAESEGWGKATGAWFEDLAGDRHRLEVLGKGQQFVAYHVHPDTGRPYEWTDFFGGL 160
Query: 115 HALKVEELPLLTPDEVEYFFEFFDTITTP-----RDKEKSYRKLSKIWKSHNNRRYTN-- 167
A++ +LP++T +VE + F+ + KS L+ + Y
Sbjct: 161 DAMRASDLPVITEAQVEEALQVFEAMAEECGLARVTGSKSRTGLTSAPEDDPLMAYEPPV 220
Query: 168 ----IEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTY-DE 222
E R ++ E Y D W+ V M++H+E GS E + EW Y
Sbjct: 221 GIDLAEARRLVAYVDNEDY----DTWLKVGMSLHHEFDGSGEALALWDEWSATASNYASS 276
Query: 223 KSFNAKWDSF 232
+ +WDSF
Sbjct: 277 EDVARRWDSF 286