BLAST/PSIBLAST alignment of GI: 254781190 and GI: 41179390 at iteration 1
>gi|41179390|ref|NP_958698.1| Bbp29 [Bordetella phage BPP-1] Length = 854
>gi|45569522|ref|NP_996591.1| primase [Bordetella phage BMP-1] Length = 854
>gi|45580773|ref|NP_996639.1| primase [Bordetella phage BIP-1] Length = 854
>gi|40950129|gb|AAR97695.1| Bbp29 [Bordetella phage BPP-1] Length = 854
 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 78/250 (31%), Positives = 110/250 (44%), Gaps = 24/250 (9%)

Query: 3   ATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKT 62
           A D+  Y  +G G+LCG G  PV A DVD  D ++  RF    Q   G    RVG APK 
Sbjct: 41  AADLTRYPEHGVGVLCGQGAQPVVAIDVDTTDAELAARFVAWCQEHLGATCERVGNAPKI 100

Query: 63  LMLFRMQETNLKKQKSE--EKIQG---HLEFLAYGQQFVAYNIHPKTQRAYTWSI---AP 114
           L+ +R +     K      E + G    LE L  GQQFVAY++HP T R Y W+      
Sbjct: 101 LLAYRAESEGWGKATGAWFEDLAGDRHRLEVLGKGQQFVAYHVHPDTGRPYEWTDFFGGL 160

Query: 115 HALKVEELPLLTPDEVEYFFEFFDTITTP-----RDKEKSYRKLSKIWKSHNNRRYTN-- 167
            A++  +LP++T  +VE   + F+ +            KS   L+   +      Y    
Sbjct: 161 DAMRASDLPVITEAQVEEALQVFEAMAEECGLARVTGSKSRTGLTSAPEDDPLMAYEPPV 220

Query: 168 ----IEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTY-DE 222
                E R  ++    E Y    D W+ V M++H+E  GS E   +  EW      Y   
Sbjct: 221 GIDLAEARRLVAYVDNEDY----DTWLKVGMSLHHEFDGSGEALALWDEWSATASNYASS 276

Query: 223 KSFNAKWDSF 232
           +    +WDSF
Sbjct: 277 EDVARRWDSF 286