BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781190|ref|YP_003065603.1| hypothetical protein
CLIBASIA_05485 [Candidatus Liberibacter asiaticus str. psy62]
(233 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781190|ref|YP_003065603.1| hypothetical protein CLIBASIA_05485 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040867|gb|ACT57663.1| hypothetical protein CLIBASIA_05485 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 233
Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust.
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP 60
MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP
Sbjct: 1 MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP 60
Query: 61 KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE 120
KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE
Sbjct: 61 KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE 120
Query: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE
Sbjct: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
Query: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD
Sbjct: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040902|gb|ACT57698.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 789
Score = 292 bits (748), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 132/233 (56%), Positives = 169/233 (72%)
Query: 1 MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP 60
+ + +D GFG +CG+G P+YAFD+D DE+ + F + F+ G PI R+GQ P
Sbjct: 41 LSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKP 100
Query: 61 KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE 120
K L+ FRM + +KK+K+ E QGHL+ L GQ FVAYNIHPKT++ YTW+ PH KVE
Sbjct: 101 KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
Query: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
+ PLL+ ++VEY F+FF IT P K+K SK W ++NNR+YTN EI AFLSCFGEE
Sbjct: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220
Query: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
FYNGSHDEWIPVVMA+H+ETRGS++GKEI R W K G TYDE++FN KWD+FD
Sbjct: 221 FYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD 273
>gi|317120690|gb|ADV02513.1| phage associated primase [Liberibacter phage SC1]
gi|317120834|gb|ADV02655.1| phage associated primase [Candidatus Liberibacter asiaticus]
Length = 790
Score = 292 bits (747), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 132/233 (56%), Positives = 169/233 (72%)
Query: 1 MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP 60
+ + +D GFG +CG+G P+YAFD+D DE+ + F + F+ G PI R+GQ P
Sbjct: 41 LSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKP 100
Query: 61 KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE 120
K L+ FRM + +KK+K+ E QGHL+ L GQ FVAYNIHPKT++ YTW+ PH KVE
Sbjct: 101 KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
Query: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
+ PLL+ ++VEY F+FF IT P K+K SK W ++NNR+YTN EI AFLSCFGEE
Sbjct: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220
Query: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
FYNGSHDEWIPVVMA+H+ETRGS++GKEI R W K G TYDE++FN KWD+FD
Sbjct: 221 FYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD 273
>gi|317120732|gb|ADV02554.1| phage associated primase/P4 family phage/plasmid primase
[Liberibacter phage SC2]
gi|317120793|gb|ADV02614.1| phage associated primase [Candidatus Liberibacter asiaticus]
Length = 790
Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/233 (53%), Positives = 164/233 (70%)
Query: 1 MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP 60
+ + ++D GFG++CG+G P+YAFD+D DE+ + F + F+ G PI R+GQ P
Sbjct: 41 LSSEEIDKLPACGFGLVCGVGEQPLYAFDIDSKDEKTTNNFKDTFEILHGTPIVRIGQKP 100
Query: 61 KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE 120
K L+ FRM + +KK+K+ E QGHL+ L YGQ FVAYNIHP T+ YTW+ PH K E
Sbjct: 101 KILIPFRMDKDGVKKKKTPESPQGHLDILGYGQYFVAYNIHPITKEEYTWTTPPHRFKAE 160
Query: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
+LPLL+ ++VE F + F TTP K K K K+ K++NNR YTN EI AFLSCF E+
Sbjct: 161 DLPLLSKEDVECFSKAFQDFTTPLVKAKKSIKPVKLGKNNNNRYYTNREITAFLSCFNED 220
Query: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
FYNGSHD+WIPV+MA+H+ETRGS +G++I R W K G TYDE +FN KWD+FD
Sbjct: 221 FYNGSHDDWIPVIMAVHHETRGSDKGQDIARRWSKQGSTYDEANFNYKWDTFD 273
>gi|315121955|ref|YP_004062444.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495357|gb|ADR51956.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 686
Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 120/166 (72%)
Query: 68 MQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTP 127
M + +KK+++ + QGHL+ L GQ FVAYNIHPKT+ YTW+ P A K EELPLL+
Sbjct: 1 MAKAGIKKKQTPKSQQGHLDILGGGQYFVAYNIHPKTKEEYTWTTPPDAFKAEELPLLSE 60
Query: 128 DEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHD 187
++VE+ FEFF TTP K K K K + NRRYTN EI AFLSCFGEEF NG+HD
Sbjct: 61 EDVEHLFEFFKESTTPVVKAKKEIKSPKEGNTKGNRRYTNREITAFLSCFGEEFTNGTHD 120
Query: 188 EWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
EWIPVVMAIH+ET+GS EGKE+ R W K G +YDE++FN KW +FD
Sbjct: 121 EWIPVVMAIHHETQGSHEGKELARRWSKRGSSYDEENFNYKWSTFD 166
>gi|315122923|ref|YP_004063412.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496325|gb|ADR52924.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 356
Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 120/166 (72%)
Query: 68 MQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTP 127
M + +KK+++ + QGHL+ L GQ FVAYNIHPKT+ YTW+ P A K EELPLL+
Sbjct: 1 MAKAGIKKKQTPKSQQGHLDILGGGQYFVAYNIHPKTKEEYTWTTPPDAFKAEELPLLSE 60
Query: 128 DEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHD 187
++VE+ FEFF TTP K K K K + NRRYTN EI AFLSCFGEEF NG+HD
Sbjct: 61 EDVEHLFEFFKESTTPVVKAKKEIKSPKEGNTKGNRRYTNREITAFLSCFGEEFTNGTHD 120
Query: 188 EWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
EWIPVVMAIH+ET+GS EGKE+ R W K G +YDE++FN KW +FD
Sbjct: 121 EWIPVVMAIHHETQGSHEGKELARRWSKRGSSYDEENFNYKWSTFD 166
>gi|41179390|ref|NP_958698.1| Bbp29 [Bordetella phage BPP-1]
gi|45569522|ref|NP_996591.1| primase [Bordetella phage BMP-1]
gi|45580773|ref|NP_996639.1| primase [Bordetella phage BIP-1]
gi|40950129|gb|AAR97695.1| Bbp29 [Bordetella phage BPP-1]
Length = 854
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 78/250 (31%), Positives = 110/250 (44%), Gaps = 24/250 (9%)
Query: 3 ATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKT 62
A D+ Y +G G+LCG G PV A DVD D ++ RF Q G RVG APK
Sbjct: 41 AADLTRYPEHGVGVLCGQGAQPVVAIDVDTTDAELAARFVAWCQEHLGATCERVGNAPKI 100
Query: 63 LMLFRMQETNLKKQKSE--EKIQG---HLEFLAYGQQFVAYNIHPKTQRAYTWSI---AP 114
L+ +R + K E + G LE L GQQFVAY++HP T R Y W+
Sbjct: 101 LLAYRAESEGWGKATGAWFEDLAGDRHRLEVLGKGQQFVAYHVHPDTGRPYEWTDFFGGL 160
Query: 115 HALKVEELPLLTPDEVEYFFEFFDTITTP-----RDKEKSYRKLSKIWKSHNNRRYTN-- 167
A++ +LP++T +VE + F+ + KS L+ + Y
Sbjct: 161 DAMRASDLPVITEAQVEEALQVFEAMAEECGLARVTGSKSRTGLTSAPEDDPLMAYEPPV 220
Query: 168 ----IEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTY-DE 222
E R ++ E Y D W+ V M++H+E GS E + EW Y
Sbjct: 221 GIDLAEARRLVAYVDNEDY----DTWLKVGMSLHHEFDGSGEALALWDEWSATASNYASS 276
Query: 223 KSFNAKWDSF 232
+ +WDSF
Sbjct: 277 EDVARRWDSF 286
>gi|91214217|ref|NP_919008.2| DR0530-like primase [Burkholderia phage BcepNazgul]
gi|88604910|gb|AAQ63375.2| DR0530-like primase [Burkholderia phage BcepNazgul]
Length = 843
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 104/240 (43%), Gaps = 26/240 (10%)
Query: 17 LCGIG--THPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQETNLK 74
L G+G T D+D+ DE N G RVG+AP+ L+LFR E K
Sbjct: 72 LAGVGFLTKNTPGVDIDISDEGFAKHMENFVHENFGMAPVRVGRAPRRLLLFRCTEPFSK 131
Query: 75 KQKS----EEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTW--SIAPHALKVEELPLLTPD 128
S E +E LA GQQFVA++IHP T+R Y W +P ++ ELP+L
Sbjct: 132 VNSSVYLDEWGEAQKVEILANGQQFVAFHIHPDTKRPYEWLYKQSPLDIEASELPVLRRV 191
Query: 129 EVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRY------------TNI---EIRAF 173
+ + + F+ R R + +S + T+I E+ A
Sbjct: 192 DAQAIVDEFEKQAKLRGWTLKKRSRTAPERSESGGEIDYDDPFAADVAKTDIGEDELHAK 251
Query: 174 LSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
L + ++ W+ V MA+ ++ G G E+ EW + YD K +AKW SFD
Sbjct: 252 LLLVPDA---DDYETWVNVGMALFHQYDGHERGLELWHEWSETADNYDAKELDAKWKSFD 308
>gi|254463719|ref|ZP_05077130.1| Primase C terminal 2 family [Rhodobacterales bacterium Y4I]
gi|206684627|gb|EDZ45109.1| Primase C terminal 2 family [Rhodobacterales bacterium Y4I]
Length = 890
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 70/233 (30%), Positives = 106/233 (45%), Gaps = 26/233 (11%)
Query: 15 GILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCG-KPISRVGQAPKTLMLFRMQETNL 73
G++CG + D+DVLD R G P+SR+G+APK L+ FR
Sbjct: 95 GLVCG----DLIGVDIDVLDRDHAHRLTFIATEMLGMSPLSRIGRAPKILLAFRTDAPFD 150
Query: 74 KKQKSE----EKIQGHLEFLAYGQQFVAYNIHPKTQRAYTW-SIAPHALKVEELPLLTPD 128
K Q SE + +E LA GQQFV + IHP T+ Y W +P + + ELP+++ D
Sbjct: 151 KVQTSEFHMLDGTVARVEVLATGQQFVGFGIHPDTKAPYHWPECSPLDVSLHELPVVSQD 210
Query: 129 EVEYFFE----FF-----DTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGE 179
F +F T + R+ ++ RK + + + R E A +S +
Sbjct: 211 RCAAFISAAEGYFRKVGGQTTSDRREIDREGRKAAGLKQKEAPSRELIEEAVAHIS--ND 268
Query: 180 EFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
E +D+WI V +A+ Y GS +G+++ W D KWDSF
Sbjct: 269 EL---PYDDWIKVGLAL-YAALGS-DGRDLWETWSAEASKNDPAYSAEKWDSF 316
>gi|269975282|gb|ACZ55506.1| primase [Staphylococcus phage SA1]
Length = 554
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 108/252 (42%), Gaps = 41/252 (16%)
Query: 6 VDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLML 65
+ Y NG GIL T A D+DV DE V + G+ R+G+ PK L L
Sbjct: 54 AERYTKNGIGIL----TKYTPAVDIDVYDEDAVAHMADWVLENVGRAPCRIGREPKKLFL 109
Query: 66 FRMQETNLKKQKS----EEKIQGH-LEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALK-- 118
FR E+ K KS ++ Q H +E LA GQQFVAY IHP T R Y W + L
Sbjct: 110 FRT-ESPFSKVKSGVWEDDFGQRHAVEILADGQQFVAYGIHPDTNRDYYWLDDENPLNNA 168
Query: 119 ----VEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFL 174
+EE+ L T E+ F+ + KE+ + + + + + E +
Sbjct: 169 ADFDLEEISLDTAREIAAEFDRY-------AKEQGWTMVKRPMNGYEAIGTADEE--DWA 219
Query: 175 SCFGEEFYNGSHDE----------------WIPVVMAIHYETRGSAEGKEIVREWCKLGR 218
+ G ++G++++ +I V+ A+ R E K I REW
Sbjct: 220 ATAGIRKWDGTYEDLRDLVMKYPNPEDYENYIKVLAALQISCRDQDEAKSIAREWAMQAH 279
Query: 219 TYDEKSFNAKWD 230
+D+ F KWD
Sbjct: 280 NFDDGDFEYKWD 291
>gi|150396564|ref|YP_001327031.1| hypothetical protein Smed_1346 [Sinorhizobium medicae WSM419]
gi|150028079|gb|ABR60196.1| hypothetical protein Smed_1346 [Sinorhizobium medicae WSM419]
Length = 793
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 62/218 (28%), Positives = 92/218 (42%), Gaps = 35/218 (16%)
Query: 19 GIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCG--KPISRVGQAPKTLMLFRMQETNLKKQ 76
G+ T + A DVD D + D+ + G + RVG+APK L +F+ E K
Sbjct: 63 GVLTGDIVAVDVDAPDAAIADQLIARLMAIPGAKRAPYRVGKAPKCLFIFKATEPRRKAS 122
Query: 77 KSEEKIQG---HLEFLAYGQQFVAYNIHPKTQRAYTWSIA-PHALKVEELPLLTPDEVEY 132
E I G +E L GQQFVAY H +T Y WS P ++ + +LP +TPD V+
Sbjct: 123 TGEYLIGGSKCQVEILGQGQQFVAYGNHAETGLPYVWSNGEPLSIPLHDLPEITPDAVDA 182
Query: 133 FFEFFDTIT----TPRDKEKSYRKLSK----IWKSHNNRRYTNIEIRAFLSCFGEEFYNG 184
F D I TP K+ R+ + W+ N+ N
Sbjct: 183 FLADADAILAKAGTPMKKKSEPRQQGRGADTFWQRVNSAALDNT---------------- 226
Query: 185 SHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDE 222
D W+P + + + G+ + +E LGR +E
Sbjct: 227 --DRWVPSLFSSARKEAGTGAWRITSKE---LGRDLEE 259
>gi|144898907|emb|CAM75771.1| primase [Magnetospirillum gryphiswaldense MSR-1]
Length = 757
Score = 74.7 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 20/222 (9%)
Query: 15 GILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCG-KPISRVGQAPKTLMLFRMQETNL 73
G+ CG + D+DVLD + R + G P+ R+G+APK L+++R
Sbjct: 71 GLACGT----LVGIDIDVLDPDIAHRLERLARDMLGDTPLLRIGKAPKRLLVYRADVPFS 126
Query: 74 KKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTW-SIAPHALKVEELPLLTPDEVEY 132
+++ LE LA+G+QFVA+ IHP T + Y W +P + +++LP++T D V
Sbjct: 127 GPKRAP------LEILAHGRQFVAFAIHPDTGQPYVWPEDSPLTVALDDLPVVTEDSVRA 180
Query: 133 FFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPV 192
+ E + + + + S + +R T +R+ L+ + +D W+ +
Sbjct: 181 WLEAAIALLPTELRPATLESPAASMPSTSPQRGTLAAVRSALAHIPNA--DLDYDSWVRI 238
Query: 193 VMAIHYETRGS--AEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
MA+ +G+ EG + W + + W SF
Sbjct: 239 GMAV----KGAIGEEGASLFAAWSAMSAKDVPATTANAWASF 276
>gi|254504141|ref|ZP_05116292.1| hypothetical protein SADFL11_4180 [Labrenzia alexandrii DFL-11]
gi|222440212|gb|EEE46891.1| hypothetical protein SADFL11_4180 [Labrenzia alexandrii DFL-11]
Length = 1293
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 11 YNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGK-PISRVGQAPKTLMLFRMQ 69
+ G GI G G H + A D+DV+D + F + + C K P R+G++PK L L+R
Sbjct: 140 HGGAGITLG-GHHNIAAIDMDVMDPVLAAEFESVLELLCDKSPFERIGKSPKKLWLYRT- 197
Query: 70 ETNLKKQKSEE----KIQGHLEFLAYGQQF-VAYNIHPKTQRAYTWSIAP-HALKVEELP 123
E +K S E + +E A QF V Y +H T+R YTW A + V ++P
Sbjct: 198 EKPIKSYASGEWFTDSGKNQVELRAQSNQFIVCYGVHKDTKRPYTWPNASLYDCDVSDIP 257
Query: 124 LLTPDEVEYFFEFFDTITT 142
L++ D + E FD +
Sbjct: 258 LISADALIDMLEVFDGMAA 276
>gi|83309457|ref|YP_419721.1| hypothetical protein amb0358 [Magnetospirillum magneticum AMB-1]
gi|82944298|dbj|BAE49162.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 757
Score = 68.2 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 20/222 (9%)
Query: 15 GILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCG-KPISRVGQAPKTLMLFRMQETNL 73
G+ CG + D+DVLD + R + G P+ R+G+APK L+++R
Sbjct: 71 GLACGT----LVGIDIDVLDPDIAHRLERLARDMLGDTPLLRIGKAPKRLLVYRADVPFS 126
Query: 74 KKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTW-SIAPHALKVEELPLLTPDEVEY 132
+++ LE LA G+QFVA+ IHP T ++Y W +P + +++LP++T + V
Sbjct: 127 GPKRAP------LEILAQGRQFVAFAIHPDTGQSYVWPEDSPLTVALDDLPVVTEESVRQ 180
Query: 133 FFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPV 192
+ + + + + S S + +R T +R+ L+ + +D W+ +
Sbjct: 181 WLDAAIALLPDDLRPATLVSPSVSMPSTSPQRGTLAAVRSALAHIPNA--DLEYDSWVRI 238
Query: 193 VMAIHYETRGS--AEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
MA+ +G+ +G + W + + W SF
Sbjct: 239 GMAM----KGAIGEDGASLFAAWSAMSAKDVPAATAKAWASF 276
>gi|117926195|ref|YP_866812.1| hypothetical protein Mmc1_2915 [Magnetococcus sp. MC-1]
gi|117609951|gb|ABK45406.1| conserved hypothetical protein [Magnetococcus sp. MC-1]
Length = 765
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 103/236 (43%), Gaps = 30/236 (12%)
Query: 11 YNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPIS-RVGQAPKTLMLFRMQ 69
+ G GI G+ V D+DV DE V + G+ + R+G+APK L+++R
Sbjct: 63 WPGAGI--GVPGGQVAGIDIDVADESVSLQLEQLAMRLFGETKAVRIGRAPKRLLVYRT- 119
Query: 70 ETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTW-SIAPHALKVEELPLLTPD 128
+T K K LE L GQQFVAY IHP T Y W + LK+E+LP++T
Sbjct: 120 DTPFKGIKKHP-----LEVLCLGQQFVAYAIHPDTGHPYQWINQELTDLKIEDLPVITEQ 174
Query: 129 EVEYFFE----FFDTITTPR------DKEKSYRKLSKIWKSHNNRRYTNI-EIRAFLSCF 177
+ +F E P D SY +S + Y + + F+S
Sbjct: 175 QAHHFIEQGLALLPVEMRPARLEARGDSCNSYSAISTVISHSQAGTYEAVADAMRFISN- 233
Query: 178 GEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREW-CKLGRTYDEKSFNAKWDSF 232
+ +D+W+ + MAI G A G+ + EW + +++F A W F
Sbjct: 234 ----ADLPYDDWMRIGMAIK-GALGDA-GEVLFAEWSASSAKNIAQETFKA-WSGF 282
>gi|85703019|ref|ZP_01034123.1| hypothetical protein ROS217_19797 [Roseovarius sp. 217]
gi|85671947|gb|EAQ26804.1| hypothetical protein ROS217_19797 [Roseovarius sp. 217]
Length = 1012
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 62/129 (48%), Gaps = 26/129 (20%)
Query: 18 CGIG--THPVYAFDVDVLDEQ--------VVDRFNNEFQSCCGKPISRVGQAPKTLMLFR 67
CGIG T + D+DVLD V RF G+ + RVG PK L+++R
Sbjct: 81 CGIGLRTGLLVGIDIDVLDPDRAHDVQALAVRRF--------GETLVRVGCWPKRLLIYR 132
Query: 68 MQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIA--PHALKVEELPLL 125
E K KS G +E L GQQFVA+ IHP T R Y W + P + + +LP++
Sbjct: 133 T-EIPFAKMKS-----GQVEILGQGQQFVAFGIHPGTGRPYAWPLGETPLDVALSDLPVI 186
Query: 126 TPDEVEYFF 134
E+ F
Sbjct: 187 DHTEIAAFL 195
>gi|85703049|ref|ZP_01034153.1| hypothetical protein ROS217_19947 [Roseovarius sp. 217]
gi|85671977|gb|EAQ26834.1| hypothetical protein ROS217_19947 [Roseovarius sp. 217]
Length = 791
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 62/129 (48%), Gaps = 26/129 (20%)
Query: 18 CGIG--THPVYAFDVDVLDEQ--------VVDRFNNEFQSCCGKPISRVGQAPKTLMLFR 67
CGIG T + D+DVLD V RF G+ + RVG PK L+++R
Sbjct: 81 CGIGLRTGLLVGIDIDVLDPDRAHDVQALAVRRF--------GETLVRVGCWPKRLLIYR 132
Query: 68 MQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIA--PHALKVEELPLL 125
E K KS G +E L GQQFVA+ IHP T R Y W + P + + +LP++
Sbjct: 133 T-EIPFAKMKS-----GQVEILGQGQQFVAFGIHPGTGRPYAWPLGETPLDVALSDLPVI 186
Query: 126 TPDEVEYFF 134
E+ F
Sbjct: 187 DHTEIAAFL 195
>gi|27383370|ref|NP_774899.1| hypothetical protein bll8259 [Bradyrhizobium japonicum USDA 110]
gi|27356545|dbj|BAC53524.1| bll8259 [Bradyrhizobium japonicum USDA 110]
Length = 223
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 65/145 (44%), Gaps = 17/145 (11%)
Query: 15 GILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCG--KPISRVGQAPKTLMLFRMQETN 72
G+LCG + DVD D + D G + R+G+APKTL FR E
Sbjct: 59 GLLCG----ELVGLDVDTPDAETADAIRAMVMELPGSDRAPYRMGKAPKTLFAFRATEPR 114
Query: 73 LKKQKSEEKIQG-HLEFLAYGQ--QFVAYNIHPKTQRAYTW-SIAPHALKVEELPLLTPD 128
K+ I G + A+G+ QFVA+ HP T R Y W + +P + ELP +TP+
Sbjct: 115 EKRATGAYLINGAKCQVEAFGERTQFVAFGTHPDTGRPYEWFNGSPAETPLAELPEITPE 174
Query: 129 EV-------EYFFEFFDTITTPRDK 146
+ E +F T+ P K
Sbjct: 175 AIDELLARAEAYFAERGTLIKPASK 199
>gi|39937604|ref|NP_949880.1| hypothetical protein RPA4546 [Rhodopseudomonas palustris CGA009]
gi|39651463|emb|CAE29986.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
Length = 770
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 9/129 (6%)
Query: 13 GFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQE-- 70
G GI+ G G + A D D LD+ + G R+G+APK + L R+ E
Sbjct: 84 GVGIMTG-GPLNLIAVDADTLDQACAGKVMIAGMKHFGSTPVRIGRAPKAVYLIRVTEPI 142
Query: 71 ----TNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLT 126
E + +E L+ G+QFVA+ IHP T++ Y W+ V++LP++T
Sbjct: 143 QYCRVEFGPLNDEGRRVDRVELLSDGRQFVAHGIHPVTKKPYVWTTP--LCHVDKLPVVT 200
Query: 127 PDEVEYFFE 135
P ++ F +
Sbjct: 201 PQQLAAFMD 209
>gi|217979240|ref|YP_002363387.1| hypothetical protein Msil_3116 [Methylocella silvestris BL2]
gi|217504616|gb|ACK52025.1| conserved hypothetical protein [Methylocella silvestris BL2]
Length = 841
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 19/212 (8%)
Query: 13 GFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFR-MQET 71
G G++ G+ V A D+D LD + R + G RVG+APK L L+R Q
Sbjct: 107 GVGLMTGL-VSSVLAVDIDTLDHGLSARAAELMREMLGPARPRVGRAPKALFLYRCAQPV 165
Query: 72 NLKKQKSE--EKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHAL-KVEELPLLTPD 128
K K + E + +E +Q V HPKT + Y+W P L +EL +TP+
Sbjct: 166 PFLKVKFDGPEGKRELVELSTDRRQIVMRGTHPKTGKPYSW---PEGLPPFKELTEVTPE 222
Query: 129 EVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNR-RYTNIE---IRAFLSCFGEEFYNG 184
+VE FF + + E RKLS S ++ ++T RA S E
Sbjct: 223 QVEAFFLELSHVMP--NAEFRGRKLSAGSGSGGDQTKFTGSAEAVARAVRSLPNTEALYP 280
Query: 185 SHDEWIPVVMAIHY---ETRGSAEGKEIVREW 213
+ D W+ ++ AI + G+AE + +EW
Sbjct: 281 TRDSWLDMLYAIKAALPDDPGAAEA--LAQEW 310
>gi|240142182|ref|YP_002966692.1| hypothetical protein MexAM1_META2p0504 [Methylobacterium extorquens
AM1]
gi|240012126|gb|ACS43351.1| Hypothetical protein MexAM1_META2p0504 [Methylobacterium extorquens
AM1]
Length = 1438
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 14/139 (10%)
Query: 15 GILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCG-KPISRVGQAPKTLMLFR------ 67
++ G G+ ++ D+DVLDE + + G P+ RVG APK + FR
Sbjct: 107 ALVLGRGSGDAFSVDIDVLDELLSYDIRRLAEDILGATPLRRVGNAPKVALFFRWASPEE 166
Query: 68 ---MQETNLKKQKS--EEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSI-APHALKVEE 121
+Q T K + + + QG L+ L Y + Y H +T R ++W P + E+
Sbjct: 167 AHKLQRTAFKFRDATGRGREQG-LDILNYAKSVTIYGRHHRTGRNFSWEADTPLTTRPED 225
Query: 122 LPLLTPDEVEYFFEFFDTI 140
LP +T ++V+ F + D +
Sbjct: 226 LPAVTAEDVQRFVDAVDVL 244
>gi|328543326|ref|YP_004303435.1| Gp33 [polymorphum gilvum SL003B-26A1]
gi|326413072|gb|ADZ70135.1| Gp33 [Polymorphum gilvum SL003B-26A1]
Length = 779
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 28/154 (18%)
Query: 86 LEFLAYGQQFVAY-NIHPKTQRAYTWSIAPHALKVEELPLLTPDEVEYFFEFFDTITTPR 144
+EF + G+Q VA ++HP+T R Y ++ L++E P
Sbjct: 165 VEFKSLGRQVVAAGSVHPETGRLY--ALDDDVLRME------------------LSEAPE 204
Query: 145 DKEKSYRKLSKIWKSHNNRRYTNI---EIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETR 201
EK R + K+ + R I ++ LS YNG HDEW+ V+MA H+ T
Sbjct: 205 ASEKLLRAIEKLSVGASENRSGEITAEQLARLLSKLDVMAYNGRHDEWLKVMMASHHGTA 264
Query: 202 GSAEGKEIVREWCKLGRTY--DEKSFNAKWDSFD 233
G EG + W Y DE +W+S D
Sbjct: 265 G--EGVDEFVAWSTSDPDYAGDEARIRERWNSLD 296
>gi|23012376|ref|ZP_00052477.1| hypothetical protein Magn03006897 [Magnetospirillum magnetotacticum
MS-1]
Length = 543
Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 19/157 (12%)
Query: 11 YNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCG-KPISRVGQAPKTLMLFRMQ 69
+N GIL H A DVDV D + S G P RVG+ P+ ++++R
Sbjct: 104 HNVAGILGPSSAH-TCAIDVDVGDLDLSLAIVERADSILGYTPFRRVGRDPRIILIYR-- 160
Query: 70 ETNLKKQKSEEKI----------QGHL-EFLAYGQQFVAYNIHPKTQRAYTW-SIAPHAL 117
E KS+ I +GH+ E LA G + +H KT + + W +PH
Sbjct: 161 EAGAATAKSDALIRQKKLWLQGPEGHMIEILARGAPVTFFGLHHKTGKYFLWLDRSPHVA 220
Query: 118 KVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLS 154
EE +T D+++ EF D + R + +L+
Sbjct: 221 PPEEAREVTRDQID---EFLDAVNALRPLKAGTGRLA 254
>gi|254559012|ref|YP_003066107.1| hypothetical protein METDI0390 [Methylobacterium extorquens DM4]
gi|254266290|emb|CAX22051.1| hypothetical protein METDI0390 [Methylobacterium extorquens DM4]
Length = 1433
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 17 LCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCG-KPISRVGQAPKTLMLFR---MQETN 72
+ G + +A D+DV D ++ + G P SRVG+ P+ ++++R + E
Sbjct: 190 ILGAASGGTWALDIDVSDAELSNAIVKLADDHLGYTPFSRVGRVPRIVLVYRQAPVSEVG 249
Query: 73 LKK----------QKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTW-SIAPHALKVEE 121
+ + E G +E L +G+ + +H T + + W +PH L E
Sbjct: 250 ADQVIRVSPHRFAARPGEDSPGQIEVLGHGKPVTFFGLHHGTGKYFIWVDRSPHVLGPEH 309
Query: 122 LPLLTPDEVEYFFE 135
PL+T + + F +
Sbjct: 310 APLVTRQQYDAFLD 323
>gi|86158263|ref|YP_465048.1| hypothetical protein Adeh_1839 [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774774|gb|ABC81611.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 751
Score = 44.3 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 186 HDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
HDEW+ V MA+H+ GSAEG + EW G Y +W SF
Sbjct: 222 HDEWLRVGMALHFGFEGSAEGLALWNEWSAGGGKYKNGEPADRWRSF 268
>gi|307317147|ref|ZP_07596588.1| Primase 2 [Sinorhizobium meliloti AK83]
gi|306897235|gb|EFN27980.1| Primase 2 [Sinorhizobium meliloti AK83]
Length = 806
Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 91/245 (37%), Gaps = 35/245 (14%)
Query: 12 NGFGILCG----IGTHPVYAFDVDVLDEQVVD----RFNNEFQSCCGKPISRVGQAPKTL 63
N G+ G IG ++ D+D+ D ++ D + F P G ++
Sbjct: 49 NNVGVRLGKWSKIGNDYLHVIDLDIRDPKLADEARQKLTELFPVWKTYPTVISGSGGESR 108
Query: 64 MLFRMQETNLKKQK---SEEKIQG---------HLEFLAYGQQF-VAYNIHPKTQRAYTW 110
+ + + +K S EKIQ ++ G+Q + +IHP T + Y W
Sbjct: 109 HFYILSDKPFSPKKLAHSREKIQTADGKWHWRWEIDLFGTGKQVAMPPSIHPDTGKPYRW 168
Query: 111 SIAPHALKVEEL---PLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTN 167
P +L P++ D + + + + L +
Sbjct: 169 Q-TPFDFDDLDLGLGPMVGSDVLAKMLDMDADDERAAADPERSKPLG----------LSL 217
Query: 168 IEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNA 227
EIR L +++ D W+ V M++H+ET GS G ++ ++ K +D+
Sbjct: 218 DEIREVLDDLPRDYWRDDRDGWLTVGMSLHHETGGSDHGYKLWLDFSKDSEKFDKSDQKR 277
Query: 228 KWDSF 232
W SF
Sbjct: 278 VWKSF 282
>gi|160898867|ref|YP_001564449.1| P4 family phage/plasmid primase [Delftia acidovorans SPH-1]
gi|160364451|gb|ABX36064.1| phage/plasmid primase, P4 family [Delftia acidovorans SPH-1]
Length = 857
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 185 SHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTY-DEKSFNAKWDSF 232
S EW+ +MA+H+E GS + ++ EW G +Y K +WDSF
Sbjct: 248 SRAEWLNALMALHHEFDGSEDALDLADEWSATGDSYAGRKDVEGRWDSF 296
>gi|323173146|gb|EFZ58777.1| hypothetical protein ECLT68_2560 [Escherichia coli LT-68]
Length = 565
Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 14 FGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP--KTLMLFRMQET 71
+GI G V A D D+ D + + N SC G+ R +A K L L +
Sbjct: 56 YGICVRTGDG-VVALDCDINDAGMQEIVRNIILSCLGELPPRRWRADSHKCLYLIAVDGD 114
Query: 72 NLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQR 106
K+ E +E LA GQQFVA HP +R
Sbjct: 115 YRKRGHRLEGENKQIELLAKGQQFVACGTHPAGER 149
>gi|332088051|gb|EGI93176.1| hypothetical protein SB521682_2984 [Shigella boydii 5216-82]
Length = 753
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 14 FGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP--KTLMLFRMQET 71
+GI G V A D D+ D + + N SC G+ R +A K L L +
Sbjct: 86 YGICVRTGDG-VVALDCDINDAGMQEIVRNIILSCLGELPPRRWRADSHKCLYLIAVDGD 144
Query: 72 NLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQR 106
K+ E +E LA GQQFVA HP +R
Sbjct: 145 YRKRGHRLEGENKQIELLAKGQQFVACGTHPAGER 179
>gi|48696649|ref|YP_024428.1| integrase [Vibrio phage VP2]
gi|40950047|gb|AAR97638.1| integrase [Vibrio phage VP2]
Length = 762
Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 90/231 (38%), Gaps = 25/231 (10%)
Query: 11 YNGF--GILCGIGTHPVYAFDVDVLDEQVVDRFNNE--FQSCCGKPISRVGQAPKTLMLF 66
+ GF GI CG V+A D+DV D + F+N + GK ++ + + P +
Sbjct: 74 FRGFNLGIACG-KRGGVFAVDIDVEDSKGNRGFDNLAILEEKYGKLVAPIQETPTGGRHY 132
Query: 67 RMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNI----HPKTQRAYTWSIAPHALKVEEL 122
Q K S KI ++ + +I + + YTWS+ P V E+
Sbjct: 133 LFQWDKYAKSSSG-KIAKAIDTRGGDEDSCKSHIVAWPSVRDEGEYTWSM-PTLGDVPEI 190
Query: 123 PLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFY 182
P D + P + R +I + RYT +I L +
Sbjct: 191 PKWISD----------ALGVPWTGNMN-RGSEEIDEDDLETRYTPRQIWRMLEYIDPDEL 239
Query: 183 NGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
+DEW+ V+ A+H + +G E+ W + G Y + +W SFD
Sbjct: 240 --EYDEWLAVLQAVHSQYP-DDQGYELADRWSQRGARYKPDEVSIRWQSFD 287
>gi|48696691|ref|YP_024985.1| putative integrase [Vibrio phage VP5]
gi|40806154|gb|AAR92072.1| putative integrase [Vibrio phage VP5]
Length = 762
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 90/231 (38%), Gaps = 25/231 (10%)
Query: 11 YNGF--GILCGIGTHPVYAFDVDVLDEQVVDRFNNE--FQSCCGKPISRVGQAPKTLMLF 66
+ GF GI CG V+A D+DV D + F+N + GK ++ + + P +
Sbjct: 74 FRGFNLGIACG-KRGGVFAVDIDVEDSKGNRGFDNLAILEEKYGKLVAPIQETPTGGRHY 132
Query: 67 RMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNI----HPKTQRAYTWSIAPHALKVEEL 122
Q K S KI ++ + +I + + YTWS+ P V E+
Sbjct: 133 LFQWDKYAKSSSG-KIAKAIDTRGGDEDSCKSHIVAWPSVRDEGEYTWSM-PTLGDVPEI 190
Query: 123 PLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFY 182
P D + P + R +I + RYT +I L +
Sbjct: 191 PKWISD----------ALGVPWTGNMN-RGSEEIDEDDLETRYTPRQIWRMLEYIDPDEL 239
Query: 183 NGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
+DEW+ V+ A+H + +G E+ W + G Y + +W SFD
Sbjct: 240 --EYDEWLAVLQAVHSQYP-DDQGYELADRWSQRGARYKPDEVSIRWQSFD 287
>gi|86750422|ref|YP_486918.1| hypothetical protein RPB_3311 [Rhodopseudomonas palustris HaA2]
gi|86573450|gb|ABD08007.1| hypothetical protein RPB_3311 [Rhodopseudomonas palustris HaA2]
Length = 1082
Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 47/119 (39%), Gaps = 16/119 (13%)
Query: 13 GFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQETN 72
G GI CG D D L E ++ P+ + K L +F +
Sbjct: 78 GIGIACGFNNLVAVDIDRDDLIEPLLAVL---------PPMVVAKRGRKGLTVFYRGAEH 128
Query: 73 LKKQKSEEKIQGHLEFLAYGQQFV-AYNIHPKTQRAYTWSIAPHALK--VEELPLLTPD 128
K G L+F+A G Q V IHP T + Y W+ L VEELPLLT D
Sbjct: 129 WPKAN----YTGFLDFIARGAQTVLPPTIHPDTGQPYAWTTERTLLDTPVEELPLLTAD 183
>gi|295107941|emb|CBL21894.1| pseudouridine synthase, RluA family [Ruminococcus obeum A2-162]
Length = 342
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 19 GIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQETNLKKQKS 78
GI THP A D L QV F+ + SC +PI R+ + ++LF K Q S
Sbjct: 103 GILTHPSGAHYADTLSNQVAGYFHKKKLSCRVRPIGRLDKETSGIVLFA------KNQVS 156
Query: 79 EEKIQGHLEFLAYGQQFVA 97
+++Q E +Q++A
Sbjct: 157 AQRLQTQRESGILHKQYIA 175
>gi|123379005|ref|XP_001298262.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121878763|gb|EAX85332.1| hypothetical protein TVAG_022530 [Trichomonas vaginalis G3]
Length = 310
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 18 CGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLF-RMQETNLKKQ 76
GI T +F VD+LDE + +R++++F + K ISR A K + +F RM +T ++
Sbjct: 18 IGIETRSSKSFGVDLLDEDIWERWSSDFNASYIKEISRKAGAEKRISIFWRMLQTAIEGT 77
Query: 77 KSE 79
+E
Sbjct: 78 SNE 80
>gi|62362410|ref|YP_224275.1| hypothetical protein LPPPVgp44 [Listonella phage phiHSIC]
gi|58220032|gb|AAW67544.1| putative phage protein [Listonella phage phiHSIC]
Length = 815
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 169 EIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAK 228
+I+ L C + +++W+ + MAIH ET G EG ++ W G Y++K + K
Sbjct: 200 KIQDMLDCIDPDC---DYEDWLHIGMAIHDETCG--EGFDLWDAWSSNGSKYNQKEMDFK 254
Query: 229 WDSF 232
W SF
Sbjct: 255 WHSF 258
>gi|118581963|ref|YP_903213.1| hypothetical protein Ppro_3564 [Pelobacter propionicus DSM 2379]
gi|118504673|gb|ABL01156.1| hypothetical protein Ppro_3564 [Pelobacter propionicus DSM 2379]
Length = 734
Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 186 HDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDE-KSFNAKWDSF 232
+D+W+ V MA+ +ET GS EG + W G Y K KW SF
Sbjct: 297 YDDWLHVGMAVFHETSGSDEGLALFDRWSSKGSKYKGIKEIEYKWRSF 344
>gi|153213459|ref|ZP_01948770.1| integrase [Vibrio cholerae 1587]
gi|124115923|gb|EAY34743.1| integrase [Vibrio cholerae 1587]
Length = 792
Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 28/232 (12%)
Query: 11 YNGFGILCGIGTHPVYAFDVDVLDEQ------VVDRFNNEFQSCCGKPISRVGQAPKTLM 64
YN G+ CG ++A DVDV D++ +D EF I R +
Sbjct: 87 YN-IGLACG-KNGGIFAIDVDVEDKKGNKGFLALDMLEQEFGKLPETQIQRTASGGTHYI 144
Query: 65 LFRMQETNLKKQKSEEKI--QGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEEL 122
Q K + I +G E VAY P R + + + E+
Sbjct: 145 FQWTQGAKTSSGKIAKAIDTRGGDEHSCR-SHIVAY---PSRVRNGGYEMVATTVAPAEI 200
Query: 123 PLLTPDEVEYFFEFFDTITTP-RDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEF 181
P + + P R +K R +I +YT ++ L +
Sbjct: 201 PSWV----------LEALAKPDRSSKKQSRGSEEITDDDIENKYTPRQLWKMLDFINPDE 250
Query: 182 YNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
+DEW+ + AIH + A+G E+ W + G Y+ + +W +FD
Sbjct: 251 L--EYDEWLMCLQAIHSQYP-DAKGFELADRWSQRGSRYEPNEVSIRWGAFD 299
>gi|312113986|ref|YP_004011582.1| Primase 2 [Rhodomicrobium vannielii ATCC 17100]
gi|311219115|gb|ADP70483.1| Primase 2 [Rhodomicrobium vannielii ATCC 17100]
Length = 782
Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 23/153 (15%)
Query: 85 HLEFLAYGQQFV-AYNIHPKTQRAYTWSIAPHALKVEELPLLTPDEVEYFFEFFDTITTP 143
+E G+Q V +IHP T +AY W + P + +P ++ D ++ ++
Sbjct: 144 EIELFGTGKQVVLPPSIHPDTGKAYRWVLQPDLKR--GIPRISADLIDELVGGDES---- 197
Query: 144 RDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGS 203
+ +++ T E R +L + + D W+ V MA+ +E
Sbjct: 198 ----------TGFYENSEPLNLTINEARDYLDAIPD--WADDRDSWVRVGMALKHEFADD 245
Query: 204 ----AEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
E E+ EW + G Y+ A+W F
Sbjct: 246 KALIKEAWELFDEWSRRGYGYNRAKNLAQWRGF 278
>gi|189426164|ref|YP_001953341.1| P4 family phage/plasmid primase [Geobacter lovleyi SZ]
gi|189422423|gb|ACD96821.1| phage/plasmid primase, P4 family [Geobacter lovleyi SZ]
Length = 695
Score = 35.4 bits (80), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 185 SHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+EWI V M +H+E GS EG + EW + + ++ KW F
Sbjct: 173 GREEWICVGMGLHHEFAGSEEGLALWEEWSRGSTKFKDEECPEKWAGF 220
>gi|298387066|ref|ZP_06996620.1| hypothetical protein HMPREF9007_03829 [Bacteroides sp. 1_1_14]
gi|298260216|gb|EFI03086.1| hypothetical protein HMPREF9007_03829 [Bacteroides sp. 1_1_14]
Length = 713
Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 143 PRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPV-VMAIHYETR 201
P ++EK R S + ++NNRR TN RA L+ FGE F NG + + ++ +E
Sbjct: 366 PEEREKLIRLFSSLELNYNNRRETN---RA-LAYFGESFINGPELVQLALEILNFDFE-- 419
Query: 202 GSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
AE K +V KL YD + + + F
Sbjct: 420 --AEEKLVVTRMKKLLEKYDNLNLSIDKEVF 448
>gi|253568957|ref|ZP_04846367.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|251840976|gb|EES69057.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 713
Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 143 PRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPV-VMAIHYETR 201
P ++EK R S + ++NNRR TN RA L+ FGE F NG + + ++ +E
Sbjct: 366 PEEREKLIRLFSSLELNYNNRRETN---RA-LAYFGESFINGPELVQLALEILNFDFE-- 419
Query: 202 GSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
AE K +V KL YD + + + F
Sbjct: 420 --AEEKLVVTRMKKLLEKYDNLNLSIDKEVF 448
>gi|300870675|ref|YP_003785546.1| chemotaxis protein methyltransferase CheR [Brachyspira pilosicoli
95/1000]
gi|300688374|gb|ADK31045.1| chemotaxis protein methyltransferase, CheR [Brachyspira pilosicoli
95/1000]
Length = 276
Score = 34.7 bits (78), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 100 IHPKTQRAYTWSIAPHALKVEELPLLTPDEV-----EYFFEFFDTITTPRDKEKSYRKLS 154
I+P+ + Y I+ +L+V ++ + D+V EY ++FD + + K K Y K
Sbjct: 132 IYPEKVKIYATDISMQSLEVAKMGVYDKDKVANISDEYLNKYFDEMPNGKYKVKDYIKDM 191
Query: 155 KIWKSHN----NRRYTNIEI 170
++ HN N RY NI+I
Sbjct: 192 VSFEYHNLITPNNRYLNIDI 211
Searching..................................................done
Results from round 2
>gi|254781190|ref|YP_003065603.1| hypothetical protein CLIBASIA_05485 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040867|gb|ACT57663.1| hypothetical protein CLIBASIA_05485 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 233
Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats.
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP 60
MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP
Sbjct: 1 MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP 60
Query: 61 KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE 120
KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE
Sbjct: 61 KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE 120
Query: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE
Sbjct: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
Query: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD
Sbjct: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040902|gb|ACT57698.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 789
Score = 321 bits (822), Expect = 5e-86, Method: Composition-based stats.
Identities = 132/233 (56%), Positives = 169/233 (72%)
Query: 1 MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP 60
+ + +D GFG +CG+G P+YAFD+D DE+ + F + F+ G PI R+GQ P
Sbjct: 41 LSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKP 100
Query: 61 KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE 120
K L+ FRM + +KK+K+ E QGHL+ L GQ FVAYNIHPKT++ YTW+ PH KVE
Sbjct: 101 KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
Query: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
+ PLL+ ++VEY F+FF IT P K+K SK W ++NNR+YTN EI AFLSCFGEE
Sbjct: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220
Query: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
FYNGSHDEWIPVVMA+H+ETRGS++GKEI R W K G TYDE++FN KWD+FD
Sbjct: 221 FYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD 273
>gi|317120690|gb|ADV02513.1| phage associated primase [Liberibacter phage SC1]
gi|317120834|gb|ADV02655.1| phage associated primase [Candidatus Liberibacter asiaticus]
Length = 790
Score = 320 bits (820), Expect = 8e-86, Method: Composition-based stats.
Identities = 132/233 (56%), Positives = 169/233 (72%)
Query: 1 MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP 60
+ + +D GFG +CG+G P+YAFD+D DE+ + F + F+ G PI R+GQ P
Sbjct: 41 LSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKP 100
Query: 61 KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE 120
K L+ FRM + +KK+K+ E QGHL+ L GQ FVAYNIHPKT++ YTW+ PH KVE
Sbjct: 101 KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
Query: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
+ PLL+ ++VEY F+FF IT P K+K SK W ++NNR+YTN EI AFLSCFGEE
Sbjct: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220
Query: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
FYNGSHDEWIPVVMA+H+ETRGS++GKEI R W K G TYDE++FN KWD+FD
Sbjct: 221 FYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD 273
>gi|317120732|gb|ADV02554.1| phage associated primase/P4 family phage/plasmid primase
[Liberibacter phage SC2]
gi|317120793|gb|ADV02614.1| phage associated primase [Candidatus Liberibacter asiaticus]
Length = 790
Score = 304 bits (778), Expect = 6e-81, Method: Composition-based stats.
Identities = 124/233 (53%), Positives = 164/233 (70%)
Query: 1 MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP 60
+ + ++D GFG++CG+G P+YAFD+D DE+ + F + F+ G PI R+GQ P
Sbjct: 41 LSSEEIDKLPACGFGLVCGVGEQPLYAFDIDSKDEKTTNNFKDTFEILHGTPIVRIGQKP 100
Query: 61 KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE 120
K L+ FRM + +KK+K+ E QGHL+ L YGQ FVAYNIHP T+ YTW+ PH K E
Sbjct: 101 KILIPFRMDKDGVKKKKTPESPQGHLDILGYGQYFVAYNIHPITKEEYTWTTPPHRFKAE 160
Query: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
+LPLL+ ++VE F + F TTP K K K K+ K++NNR YTN EI AFLSCF E+
Sbjct: 161 DLPLLSKEDVECFSKAFQDFTTPLVKAKKSIKPVKLGKNNNNRYYTNREITAFLSCFNED 220
Query: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
FYNGSHD+WIPV+MA+H+ETRGS +G++I R W K G TYDE +FN KWD+FD
Sbjct: 221 FYNGSHDDWIPVIMAVHHETRGSDKGQDIARRWSKQGSTYDEANFNYKWDTFD 273
>gi|41179390|ref|NP_958698.1| Bbp29 [Bordetella phage BPP-1]
gi|45569522|ref|NP_996591.1| primase [Bordetella phage BMP-1]
gi|45580773|ref|NP_996639.1| primase [Bordetella phage BIP-1]
gi|40950129|gb|AAR97695.1| Bbp29 [Bordetella phage BPP-1]
Length = 854
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 75/252 (29%), Positives = 109/252 (43%), Gaps = 24/252 (9%)
Query: 1 MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP 60
+ A D+ Y +G G+LCG G PV A DVD D ++ RF Q G RVG AP
Sbjct: 39 LGAADLTRYPEHGVGVLCGQGAQPVVAIDVDTTDAELAARFVAWCQEHLGATCERVGNAP 98
Query: 61 KTLMLFRMQETNLKKQKSEEKI-----QGHLEFLAYGQQFVAYNIHPKTQRAYTWSI--- 112
K L+ +R + K + LE L GQQFVAY++HP T R Y W+
Sbjct: 99 KILLAYRAESEGWGKATGAWFEDLAGDRHRLEVLGKGQQFVAYHVHPDTGRPYEWTDFFG 158
Query: 113 APHALKVEELPLLTPDEVEYFFEFFDTIT-----TPRDKEKSYRKLSKIWKSHNNRRYTN 167
A++ +LP++T +VE + F+ + KS L+ + Y
Sbjct: 159 GLDAMRASDLPVITEAQVEEALQVFEAMAEECGLARVTGSKSRTGLTSAPEDDPLMAYEP 218
Query: 168 ------IEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTY- 220
E R ++ E +D W+ V M++H+E GS E + EW Y
Sbjct: 219 PVGIDLAEARRLVAYVDNE----DYDTWLKVGMSLHHEFDGSGEALALWDEWSATASNYA 274
Query: 221 DEKSFNAKWDSF 232
+ +WDSF
Sbjct: 275 SSEDVARRWDSF 286
>gi|91214217|ref|NP_919008.2| DR0530-like primase [Burkholderia phage BcepNazgul]
gi|88604910|gb|AAQ63375.2| DR0530-like primase [Burkholderia phage BcepNazgul]
Length = 843
Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats.
Identities = 71/256 (27%), Positives = 103/256 (40%), Gaps = 35/256 (13%)
Query: 8 HYVYNG---------FGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQ 58
Y NG G+ G T D+D+ DE N G RVG+
Sbjct: 58 KYTKNGEDRVADVKLAGV--GFLTKNTPGVDIDISDEGFAKHMENFVHENFGMAPVRVGR 115
Query: 59 APKTLMLFRMQETNLKKQKS----EEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTW--SI 112
AP+ L+LFR E K S E +E LA GQQFVA++IHP T+R Y W
Sbjct: 116 APRRLLLFRCTEPFSKVNSSVYLDEWGEAQKVEILANGQQFVAFHIHPDTKRPYEWLYKQ 175
Query: 113 APHALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYT------ 166
+P ++ ELP+L + + + F+ R R + +S +
Sbjct: 176 SPLDIEASELPVLRRVDAQAIVDEFEKQAKLRGWTLKKRSRTAPERSESGGEIDYDDPFA 235
Query: 167 ---------NIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLG 217
E+ A L + ++ W+ V MA+ ++ G G E+ EW +
Sbjct: 236 ADVAKTDIGEDELHAKLLLVPDA---DDYETWVNVGMALFHQYDGHERGLELWHEWSETA 292
Query: 218 RTYDEKSFNAKWDSFD 233
YD K +AKW SFD
Sbjct: 293 DNYDAKELDAKWKSFD 308
>gi|315121955|ref|YP_004062444.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495357|gb|ADR51956.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 686
Score = 218 bits (555), Expect = 5e-55, Method: Composition-based stats.
Identities = 98/166 (59%), Positives = 120/166 (72%)
Query: 68 MQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTP 127
M + +KK+++ + QGHL+ L GQ FVAYNIHPKT+ YTW+ P A K EELPLL+
Sbjct: 1 MAKAGIKKKQTPKSQQGHLDILGGGQYFVAYNIHPKTKEEYTWTTPPDAFKAEELPLLSE 60
Query: 128 DEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHD 187
++VE+ FEFF TTP K K K K + NRRYTN EI AFLSCFGEEF NG+HD
Sbjct: 61 EDVEHLFEFFKESTTPVVKAKKEIKSPKEGNTKGNRRYTNREITAFLSCFGEEFTNGTHD 120
Query: 188 EWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
EWIPVVMAIH+ET+GS EGKE+ R W K G +YDE++FN KW +FD
Sbjct: 121 EWIPVVMAIHHETQGSHEGKELARRWSKRGSSYDEENFNYKWSTFD 166
>gi|144898907|emb|CAM75771.1| primase [Magnetospirillum gryphiswaldense MSR-1]
Length = 757
Score = 217 bits (553), Expect = 7e-55, Method: Composition-based stats.
Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 16/226 (7%)
Query: 9 YVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCG-KPISRVGQAPKTLMLFR 67
+ G+ CG + D+DVLD + R + G P+ R+G+APK L+++R
Sbjct: 65 WPDAAIGLACGT----LVGIDIDVLDPDIAHRLERLARDMLGDTPLLRIGKAPKRLLVYR 120
Query: 68 MQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWS-IAPHALKVEELPLLT 126
+++ LE LA+G+QFVA+ IHP T + Y W +P + +++LP++T
Sbjct: 121 ADVPFSGPKRAP------LEILAHGRQFVAFAIHPDTGQPYVWPEDSPLTVALDDLPVVT 174
Query: 127 PDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSH 186
D V + E + + + + S + +R T +R+ L+ + +
Sbjct: 175 EDSVRAWLEAAIALLPTELRPATLESPAASMPSTSPQRGTLAAVRSALAHIPNA--DLDY 232
Query: 187 DEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W+ + MA+ G EG + W + + W SF
Sbjct: 233 DSWVRIGMAVK-GAIG-EEGASLFAAWSAMSAKDVPATTANAWASF 276
>gi|315122923|ref|YP_004063412.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496325|gb|ADR52924.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 356
Score = 215 bits (546), Expect = 5e-54, Method: Composition-based stats.
Identities = 98/166 (59%), Positives = 120/166 (72%)
Query: 68 MQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTP 127
M + +KK+++ + QGHL+ L GQ FVAYNIHPKT+ YTW+ P A K EELPLL+
Sbjct: 1 MAKAGIKKKQTPKSQQGHLDILGGGQYFVAYNIHPKTKEEYTWTTPPDAFKAEELPLLSE 60
Query: 128 DEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHD 187
++VE+ FEFF TTP K K K K + NRRYTN EI AFLSCFGEEF NG+HD
Sbjct: 61 EDVEHLFEFFKESTTPVVKAKKEIKSPKEGNTKGNRRYTNREITAFLSCFGEEFTNGTHD 120
Query: 188 EWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
EWIPVVMAIH+ET+GS EGKE+ R W K G +YDE++FN KW +FD
Sbjct: 121 EWIPVVMAIHHETQGSHEGKELARRWSKRGSSYDEENFNYKWSTFD 166
>gi|83309457|ref|YP_419721.1| hypothetical protein amb0358 [Magnetospirillum magneticum AMB-1]
gi|82944298|dbj|BAE49162.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 757
Score = 213 bits (541), Expect = 2e-53, Method: Composition-based stats.
Identities = 54/226 (23%), Positives = 100/226 (44%), Gaps = 16/226 (7%)
Query: 9 YVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCG-KPISRVGQAPKTLMLFR 67
+ G+ CG + D+DVLD + R + G P+ R+G+APK L+++R
Sbjct: 65 WPDAAIGLACGT----LVGIDIDVLDPDIAHRLERLARDMLGDTPLLRIGKAPKRLLVYR 120
Query: 68 MQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWS-IAPHALKVEELPLLT 126
+++ LE LA G+QFVA+ IHP T ++Y W +P + +++LP++T
Sbjct: 121 ADVPFSGPKRAP------LEILAQGRQFVAFAIHPDTGQSYVWPEDSPLTVALDDLPVVT 174
Query: 127 PDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSH 186
+ V + + + + + S S + +R T +R+ L+ + +
Sbjct: 175 EESVRQWLDAAIALLPDDLRPATLVSPSVSMPSTSPQRGTLAAVRSALAHIPNA--DLEY 232
Query: 187 DEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W+ + MA+ G +G + W + + W SF
Sbjct: 233 DSWVRIGMAMK-GAIG-EDGASLFAAWSAMSAKDVPAATAKAWASF 276
>gi|254463719|ref|ZP_05077130.1| Primase C terminal 2 family [Rhodobacterales bacterium Y4I]
gi|206684627|gb|EDZ45109.1| Primase C terminal 2 family [Rhodobacterales bacterium Y4I]
Length = 890
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 68/233 (29%), Positives = 102/233 (43%), Gaps = 26/233 (11%)
Query: 15 GILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCG-KPISRVGQAPKTLMLFRMQETNL 73
G++CG + D+DVLD R G P+SR+G+APK L+ FR
Sbjct: 95 GLVCG----DLIGVDIDVLDRDHAHRLTFIATEMLGMSPLSRIGRAPKILLAFRTDAPFD 150
Query: 74 KKQKSE----EKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWS-IAPHALKVEELPLLTPD 128
K Q SE + +E LA GQQFV + IHP T+ Y W +P + + ELP+++ D
Sbjct: 151 KVQTSEFHMLDGTVARVEVLATGQQFVGFGIHPDTKAPYHWPECSPLDVSLHELPVVSQD 210
Query: 129 EVEYFFEFF---------DTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGE 179
F T + R+ ++ RK + + + R E A +S
Sbjct: 211 RCAAFISAAEGYFRKVGGQTTSDRREIDREGRKAAGLKQKEAPSRELIEEAVAHISN--- 267
Query: 180 EFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+D+WI V +A+ Y GS +G+++ W D KWDSF
Sbjct: 268 --DELPYDDWIKVGLAL-YAALGS-DGRDLWETWSAEASKNDPAYSAEKWDSF 316
>gi|269975282|gb|ACZ55506.1| primase [Staphylococcus phage SA1]
Length = 554
Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats.
Identities = 69/251 (27%), Positives = 105/251 (41%), Gaps = 39/251 (15%)
Query: 6 VDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLML 65
+ Y NG GIL T A D+DV DE V + G+ R+G+ PK L L
Sbjct: 54 AERYTKNGIGIL----TKYTPAVDIDVYDEDAVAHMADWVLENVGRAPCRIGREPKKLFL 109
Query: 66 FRMQETNLKKQKS---EEKIQGH-LEFLAYGQQFVAYNIHPKTQRAYTWSIAPH------ 115
FR + K + ++ Q H +E LA GQQFVAY IHP T R Y W +
Sbjct: 110 FRTESPFSKVKSGVWEDDFGQRHAVEILADGQQFVAYGIHPDTNRDYYWLDDENPLNNAA 169
Query: 116 ALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLS 175
+EE+ L T E+ F+ + KE+ + + + + + E + +
Sbjct: 170 DFDLEEISLDTAREIAAEFDRY-------AKEQGWTMVKRPMNGYEAIGTADEE--DWAA 220
Query: 176 CFGEEFYNGSHDE----------------WIPVVMAIHYETRGSAEGKEIVREWCKLGRT 219
G ++G++++ +I V+ A+ R E K I REW
Sbjct: 221 TAGIRKWDGTYEDLRDLVMKYPNPEDYENYIKVLAALQISCRDQDEAKSIAREWAMQAHN 280
Query: 220 YDEKSFNAKWD 230
+D+ F KWD
Sbjct: 281 FDDGDFEYKWD 291
>gi|117926195|ref|YP_866812.1| hypothetical protein Mmc1_2915 [Magnetococcus sp. MC-1]
gi|117609951|gb|ABK45406.1| conserved hypothetical protein [Magnetococcus sp. MC-1]
Length = 765
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 63/235 (26%), Positives = 94/235 (40%), Gaps = 28/235 (11%)
Query: 11 YNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPI-SRVGQAPKTLMLFRMQ 69
+ G GI G+ V D+DV DE V + G+ R+G+APK L+++R
Sbjct: 63 WPGAGI--GVPGGQVAGIDIDVADESVSLQLEQLAMRLFGETKAVRIGRAPKRLLVYRTD 120
Query: 70 ETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTW-SIAPHALKVEELPLLTPD 128
+K LE L GQQFVAY IHP T Y W + LK+E+LP++T
Sbjct: 121 TPFKGIKKHP------LEVLCLGQQFVAYAIHPDTGHPYQWINQELTDLKIEDLPVITEQ 174
Query: 129 EVEYFFEFFDTITTPR----------DKEKSYRKLSKIWKSHNNRRYTN-IEIRAFLSCF 177
+ +F E + D SY +S + Y + F+S
Sbjct: 175 QAHHFIEQGLALLPVEMRPARLEARGDSCNSYSAISTVISHSQAGTYEAVADAMRFISNA 234
Query: 178 GEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+ +D+W+ + MAI G A G+ + EW + W F
Sbjct: 235 -----DLPYDDWMRIGMAIK-GALGDA-GEVLFAEWSASSAKNIAQETFKAWSGF 282
>gi|217979240|ref|YP_002363387.1| hypothetical protein Msil_3116 [Methylocella silvestris BL2]
gi|217504616|gb|ACK52025.1| conserved hypothetical protein [Methylocella silvestris BL2]
Length = 841
Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 63/243 (25%), Positives = 94/243 (38%), Gaps = 20/243 (8%)
Query: 2 VATDVDHYVYN----GFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVG 57
TD D + G G++ G+ V A D+D LD + R + G RVG
Sbjct: 92 STTDADLVEWASWGAGVGLMTGL-VSSVLAVDIDTLDHGLSARAAELMREMLGPARPRVG 150
Query: 58 QAPKTLMLFR-MQETNLKKQK--SEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAP 114
+APK L L+R Q K K E + +E +Q V HPKT + Y+W
Sbjct: 151 RAPKALFLYRCAQPVPFLKVKFDGPEGKRELVELSTDRRQIVMRGTHPKTGKPYSWPEGL 210
Query: 115 HALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNR----RYTNIEI 170
+EL +TP++VE FF + + E RKLS S ++
Sbjct: 211 P--PFKELTEVTPEQVEAFFLELSHVMP--NAEFRGRKLSAGSGSGGDQTKFTGSAEAVA 266
Query: 171 RAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGS-AEGKEIVREWCKL--GRT-YDEKSFN 226
RA S E + D W+ ++ AI + + +EW + G D
Sbjct: 267 RAVRSLPNTEALYPTRDSWLDMLYAIKAALPDDPGAAEALAQEWSEKYDGPDGNDPDYVA 326
Query: 227 AKW 229
+W
Sbjct: 327 QEW 329
>gi|150396564|ref|YP_001327031.1| hypothetical protein Smed_1346 [Sinorhizobium medicae WSM419]
gi|150028079|gb|ABR60196.1| hypothetical protein Smed_1346 [Sinorhizobium medicae WSM419]
Length = 793
Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 59/211 (27%), Positives = 87/211 (41%), Gaps = 19/211 (9%)
Query: 18 CGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCG--KPISRVGQAPKTLMLFRMQETNLKK 75
G+ T + A DVD D + D+ + G + RVG+APK L +F+ E K
Sbjct: 62 TGVLTGDIVAVDVDAPDAAIADQLIARLMAIPGAKRAPYRVGKAPKCLFIFKATEPRRKA 121
Query: 76 QKSEEKIQG---HLEFLAYGQQFVAYNIHPKTQRAYTWSIA-PHALKVEELPLLTPDEVE 131
E I G +E L GQQFVAY H +T Y WS P ++ + +LP +TPD V+
Sbjct: 122 STGEYLIGGSKCQVEILGQGQQFVAYGNHAETGLPYVWSNGEPLSIPLHDLPEITPDAVD 181
Query: 132 YFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIP 191
F D I K K + R F + + D W+P
Sbjct: 182 AFLADADAILA---------KAGTPMKKKSEPRQQGRGADTFWQRVNSAALDNT-DRWVP 231
Query: 192 VVMAIHYETRGSAEGKEIVREWCKLGRTYDE 222
+ + + G+ + +E LGR +E
Sbjct: 232 SLFSSARKEAGTGAWRITSKE---LGRDLEE 259
>gi|39937604|ref|NP_949880.1| hypothetical protein RPA4546 [Rhodopseudomonas palustris CGA009]
gi|39651463|emb|CAE29986.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
Length = 770
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 54/226 (23%), Positives = 84/226 (37%), Gaps = 13/226 (5%)
Query: 13 GFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQET- 71
G GI+ G G + A D D LD+ + G R+G+APK + L R+ E
Sbjct: 84 GVGIMTG-GPLNLIAVDADTLDQACAGKVMIAGMKHFGSTPVRIGRAPKAVYLIRVTEPI 142
Query: 72 -----NLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLT 126
E + +E L+ G+QFVA+ IHP T++ Y W+ V++LP++T
Sbjct: 143 QYCRVEFGPLNDEGRRVDRVELLSDGRQFVAHGIHPVTKKPYVWTTP--LCHVDKLPVVT 200
Query: 127 PDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSH 186
P ++ F + I P + + R A + G+
Sbjct: 201 PQQLAAFMDELRQIL-PNTGPLVTEGATTEVSQASLRGDIEKVRAAVAATPNTSAAFGTR 259
Query: 187 DEWIPVVMAIHYETRGSA-EGKEIVREWCK--LGRTYDEKSFNAKW 229
+ + AI E EI +WC D A W
Sbjct: 260 EAYRDFGYAIKAALPDDEPEAFEIFADWCARWEDGENDPDIVAADW 305
>gi|85703049|ref|ZP_01034153.1| hypothetical protein ROS217_19947 [Roseovarius sp. 217]
gi|85671977|gb|EAQ26834.1| hypothetical protein ROS217_19947 [Roseovarius sp. 217]
Length = 791
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 52/222 (23%), Positives = 86/222 (38%), Gaps = 32/222 (14%)
Query: 8 HYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFR 67
Y G G+ G+ + D+DVLD G+ + RVG PK L+++R
Sbjct: 77 RYASCGIGLRTGL----LVGIDIDVLDPDRAHDVQALAVRRFGETLVRVGCWPKRLLIYR 132
Query: 68 MQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIA--PHALKVEELPLL 125
E K KS G +E L GQQFVA+ IHP T R Y W + P + + +LP++
Sbjct: 133 T-EIPFAKMKS-----GQVEILGQGQQFVAFGIHPGTGRPYAWPLGETPLDVALSDLPVI 186
Query: 126 TPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGS 185
E+ F + + R+ H R +
Sbjct: 187 DHTEIAAFLAEIEPTDHRSITDAGGRRRKAAGFGHPVRDAQGV-------------VTDG 233
Query: 186 HDEWIPVVMAIH--YETRGSAEGKEI----VREWCKLGRTYD 221
D W+ ++A H ++ + + ++ + W + G + D
Sbjct: 234 RDAWL-SLIAFHAVHDLLEAEDALDVDQLAAQVWQRFGESTD 274
>gi|85703019|ref|ZP_01034123.1| hypothetical protein ROS217_19797 [Roseovarius sp. 217]
gi|85671947|gb|EAQ26804.1| hypothetical protein ROS217_19797 [Roseovarius sp. 217]
Length = 1012
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 52/222 (23%), Positives = 86/222 (38%), Gaps = 32/222 (14%)
Query: 8 HYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFR 67
Y G G+ G+ + D+DVLD G+ + RVG PK L+++R
Sbjct: 77 RYASCGIGLRTGL----LVGIDIDVLDPDRAHDVQALAVRRFGETLVRVGCWPKRLLIYR 132
Query: 68 MQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIA--PHALKVEELPLL 125
E K KS G +E L GQQFVA+ IHP T R Y W + P + + +LP++
Sbjct: 133 T-EIPFAKMKS-----GQVEILGQGQQFVAFGIHPGTGRPYAWPLGETPLDVALSDLPVI 186
Query: 126 TPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGS 185
E+ F + + R+ H R +
Sbjct: 187 DHTEIAAFLAEIEPTDHRSITDAGGRRRKAAGFGHPVRDAQGV-------------VTDG 233
Query: 186 HDEWIPVVMAIH--YETRGSAEGKEI----VREWCKLGRTYD 221
D W+ ++A H ++ + + ++ + W + G + D
Sbjct: 234 RDAWL-SLIAFHAVHDLLEAEDALDVDQLAAQVWQRFGESTD 274
>gi|254504141|ref|ZP_05116292.1| hypothetical protein SADFL11_4180 [Labrenzia alexandrii DFL-11]
gi|222440212|gb|EEE46891.1| hypothetical protein SADFL11_4180 [Labrenzia alexandrii DFL-11]
Length = 1293
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 57/252 (22%), Positives = 104/252 (41%), Gaps = 30/252 (11%)
Query: 11 YNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGK-PISRVGQAPKTLMLFRMQ 69
+ G GI G G H + A D+DV+D + F + + C K P R+G++PK L L+R +
Sbjct: 140 HGGAGITLG-GHHNIAAIDMDVMDPVLAAEFESVLELLCDKSPFERIGKSPKKLWLYRTE 198
Query: 70 ETNLKKQKSEE---KIQGHLEFLAYGQQF-VAYNIHPKTQRAYTWSI-APHALKVEELPL 124
+ E + +E A QF V Y +H T+R YTW + + V ++PL
Sbjct: 199 KPIKSYASGEWFTDSGKNQVELRAQSNQFIVCYGVHKDTKRPYTWPNASLYDCDVSDIPL 258
Query: 125 LTPDEVEYFFEFFDTITTPRDKEKSYRKLSKI-------WKSHNNRRYTN----IEIRAF 173
++ D + E FD + + +K ++ + N+ R + + AF
Sbjct: 259 ISADALIDMLEVFDGMAARHGAKGIAKKQNRGAVPVGLAEANRNSHRLEDTTPLEDAVAF 318
Query: 174 L-SCFGEEFYNGS-----HDEWIPVVMAIHYETR-GSAEGKEIVREWCK-----LGRTYD 221
+ C +F++ + W + +I A + + + G
Sbjct: 319 IVECAEGDFFDPPEELLGYHGWTNSIASIVNSVPHDRALAESLAHDISAALPGYEGPDDV 378
Query: 222 EKSFNAKWDSFD 233
+K+F++ D D
Sbjct: 379 QKTFDSYHDDLD 390
>gi|27383370|ref|NP_774899.1| hypothetical protein bll8259 [Bradyrhizobium japonicum USDA 110]
gi|27356545|dbj|BAC53524.1| bll8259 [Bradyrhizobium japonicum USDA 110]
Length = 223
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 15 GILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCG--KPISRVGQAPKTLMLFRMQETN 72
G+LCG + DVD D + D G + R+G+APKTL FR E
Sbjct: 59 GLLCG----ELVGLDVDTPDAETADAIRAMVMELPGSDRAPYRMGKAPKTLFAFRATEPR 114
Query: 73 LKKQKSEEKIQG---HLEFLAYGQQFVAYNIHPKTQRAYTW-SIAPHALKVEELPLLTPD 128
K+ I G +E QFVA+ HP T R Y W + +P + ELP +TP+
Sbjct: 115 EKRATGAYLINGAKCQVEAFGERTQFVAFGTHPDTGRPYEWFNGSPAETPLAELPEITPE 174
Query: 129 EV-------EYFFEFFDTITTPRDKEK 148
+ E +F T+ P K
Sbjct: 175 AIDELLARAEAYFAERGTLIKPASKAS 201
>gi|240142182|ref|YP_002966692.1| hypothetical protein MexAM1_META2p0504 [Methylobacterium extorquens
AM1]
gi|240012126|gb|ACS43351.1| Hypothetical protein MexAM1_META2p0504 [Methylobacterium extorquens
AM1]
Length = 1438
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 12/145 (8%)
Query: 10 VYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCG-KPISRVGQAPKTLMLFR- 67
+ ++ G G+ ++ D+DVLDE + + G P+ RVG APK + FR
Sbjct: 102 PAHNVALVLGRGSGDAFSVDIDVLDELLSYDIRRLAEDILGATPLRRVGNAPKVALFFRW 161
Query: 68 --------MQETNLKKQKSEEKIQGH-LEFLAYGQQFVAYNIHPKTQRAYTWS-IAPHAL 117
+Q T K + + + + L+ L Y + Y H +T R ++W P
Sbjct: 162 ASPEEAHKLQRTAFKFRDATGRGREQGLDILNYAKSVTIYGRHHRTGRNFSWEADTPLTT 221
Query: 118 KVEELPLLTPDEVEYFFEFFDTITT 142
+ E+LP +T ++V+ F + D +
Sbjct: 222 RPEDLPAVTAEDVQRFVDAVDVLHP 246
>gi|46202140|ref|ZP_00053695.2| COG1197: Transcription-repair coupling factor (superfamily II
helicase) [Magnetospirillum magnetotacticum MS-1]
Length = 1185
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 42/229 (18%), Positives = 75/229 (32%), Gaps = 17/229 (7%)
Query: 19 GIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQE-------- 70
G+ A D+DV + D + + G R+G PK L ++ E
Sbjct: 66 GVLALATPAIDIDVRHPEAADEIDAAAERILGPAPVRIGAWPKRLRVYSGPEDMPYTSVG 125
Query: 71 --TNLKKQKSEEKIQGH-LEFL-AYGQQFVAYNIHPKTQRAYTWSIAPHALKVEE-LPLL 125
+ + + H +E L G+QFVA IHP T + Y W + L +
Sbjct: 126 ECAFPGDDTAAKGYKWHNVEVLSGGGKQFVAAAIHPGTGKPYQWPSGDLLAWPHDRLTAI 185
Query: 126 TPDEVEYFFEFFDTITTP--RDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYN 183
T + VE F I + ++ + N+ + +
Sbjct: 186 TAEMVEAFLAEVRVILARHGAVSKGGRSAITSGGDRRTSVTGNNVGLSRVAEALAHVPND 245
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+ +W+ A+ +G ++ R+W + YD W
Sbjct: 246 ADYHDWVRYAYALKGAF--GEDGFDLWRDWSERSDKYDADYTETTWAGL 292
>gi|23012376|ref|ZP_00052477.1| hypothetical protein Magn03006897 [Magnetospirillum magnetotacticum
MS-1]
Length = 543
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 16/173 (9%)
Query: 11 YNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCG-KPISRVGQAPKTLMLFRMQ 69
+N GIL H A DVDV D + S G P RVG+ P+ ++++R
Sbjct: 104 HNVAGILGPSSAH-TCAIDVDVGDLDLSLAIVERADSILGYTPFRRVGRDPRIILIYR-- 160
Query: 70 ETNLKKQKSEEKIQGH-----------LEFLAYGQQFVAYNIHPKTQRAYTW-SIAPHAL 117
E KS+ I+ +E LA G + +H KT + + W +PH
Sbjct: 161 EAGAATAKSDALIRQKKLWLQGPEGHMIEILARGAPVTFFGLHHKTGKYFLWLDRSPHVA 220
Query: 118 KVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEI 170
EE +T D+++ F + + + + + E+
Sbjct: 221 PPEEAREVTRDQIDEFLDAVNALRPLKAGTGRLAMAETWTYDAEAGLHVPAEL 273
>gi|328543326|ref|YP_004303435.1| Gp33 [polymorphum gilvum SL003B-26A1]
gi|326413072|gb|ADZ70135.1| Gp33 [Polymorphum gilvum SL003B-26A1]
Length = 779
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 48/193 (24%), Positives = 71/193 (36%), Gaps = 31/193 (16%)
Query: 47 SCCGKPISRVGQAPKTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYN-IHPKTQ 105
P G K L + E + + + +EF + G+Q VA +HP+T
Sbjct: 129 DLRDAPFVVTGGGGKHLYFRKPAEVAVVNELDAYRG---VEFKSLGRQVVAAGSVHPETG 185
Query: 106 RAYTWSIAPHALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRY 165
R Y +++ E P EK R + K+ + R
Sbjct: 186 RLYALDDDVLRMELSE--------------------APEASEKLLRAIEKLSVGASENRS 225
Query: 166 ---TNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTY-- 220
T ++ LS YNG HDEW+ V+MA H+ T G EG + W Y
Sbjct: 226 GEITAEQLARLLSKLDVMAYNGRHDEWLKVMMASHHGTAG--EGVDEFVAWSTSDPDYAG 283
Query: 221 DEKSFNAKWDSFD 233
DE +W+S D
Sbjct: 284 DEARIRERWNSLD 296
>gi|254559012|ref|YP_003066107.1| hypothetical protein METDI0390 [Methylobacterium extorquens DM4]
gi|254266290|emb|CAX22051.1| hypothetical protein METDI0390 [Methylobacterium extorquens DM4]
Length = 1433
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 18/172 (10%)
Query: 10 VYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCG-KPISRVGQAPKTLMLFRM 68
+ + G + +A D+DV D ++ + G P SRVG+ P+ ++++R
Sbjct: 183 PSHNVACILGAASGGTWALDIDVSDAELSNAIVKLADDHLGYTPFSRVGRVPRIVLVYRQ 242
Query: 69 QET--------------NLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTW-SIA 113
+ E+ G +E L +G+ + +H T + + W +
Sbjct: 243 APVSEVGADQVIRVSPHRFAARPGEDSP-GQIEVLGHGKPVTFFGLHHGTGKYFIWVDRS 301
Query: 114 PHALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRY 165
PH L E PL+T + + F + + P K + W
Sbjct: 302 PHVLGPEHAPLVTRQQYDAFLDAVHALH-PFAKPAVHEAPDAAWTFDPAAGL 352
>gi|307317147|ref|ZP_07596588.1| Primase 2 [Sinorhizobium meliloti AK83]
gi|306897235|gb|EFN27980.1| Primase 2 [Sinorhizobium meliloti AK83]
Length = 806
Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 29/242 (11%)
Query: 12 NGFGILCG----IGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGK----PISRVGQAPKTL 63
N G+ G IG ++ D+D+ D ++ D + P G ++
Sbjct: 49 NNVGVRLGKWSKIGNDYLHVIDLDIRDPKLADEARQKLTELFPVWKTYPTVISGSGGESR 108
Query: 64 MLFRMQETNLKKQK---SEEKIQG---------HLEFLAYGQQFVAY-NIHPKTQRAYTW 110
+ + + +K S EKIQ ++ G+Q +IHP T + Y W
Sbjct: 109 HFYILSDKPFSPKKLAHSREKIQTADGKWHWRWEIDLFGTGKQVAMPPSIHPDTGKPYRW 168
Query: 111 SIAPHALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEI 170
++L L V D + D + + + + + EI
Sbjct: 169 QTP---FDFDDLDLGLGPMVGS-----DVLAKMLDMDADDERAAADPERSKPLGLSLDEI 220
Query: 171 RAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWD 230
R L +++ D W+ V M++H+ET GS G ++ ++ K +D+ W
Sbjct: 221 REVLDDLPRDYWRDDRDGWLTVGMSLHHETGGSDHGYKLWLDFSKDSEKFDKSDQKRVWK 280
Query: 231 SF 232
SF
Sbjct: 281 SF 282
>gi|307149770|ref|YP_003890813.1| Primase 2 [Cyanothece sp. PCC 7822]
gi|306986570|gb|ADN18448.1| Primase 2 [Cyanothece sp. PCC 7822]
Length = 302
Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 48/239 (20%), Positives = 82/239 (34%), Gaps = 34/239 (14%)
Query: 7 DHYV--YNGFGILCGIGTHP-VYAFDVDVLDEQVVDRFNNEFQSCCGKPISRV----GQA 59
Y G GIL G + + A DVD + Q + + G+
Sbjct: 67 QRYPIRPPGIGILLGHNSKEFLVALDVD------GYSAQSFIQELLPRLPPTIAFTSGRP 120
Query: 60 PKTLMLFRMQE----TNLKKQKSEEKIQGHLEFLAYGQQFVAY-NIHPKTQRAYTWSIAP 114
+ LF++ K+ LE A GQQ V + HP T + Y W
Sbjct: 121 GRCQYLFKLPPGHSIKPFKRITGPG---EALEIRATGQQSVLPPSPHPVTGQ-YFWLGG- 175
Query: 115 HALKVEELPL-LTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAF 173
+ +E+ + + P+++ + R K+ + + + + R T IE
Sbjct: 176 --CRPDEMEVAIIPEQIIDL-----AQSPKRTKKIQPITKAPLIREVRHDRATTIEAAKS 228
Query: 174 LSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+ +D WI + M++H+ S + W +L Y KW SF
Sbjct: 229 ALSLIHANFADDYDSWIRIGMSLHFI---SFSLLDDWDRWSQLSAKYQPGECYYKWASF 284
>gi|170751665|ref|YP_001757925.1| hypothetical protein Mrad2831_5295 [Methylobacterium radiotolerans
JCM 2831]
gi|170658187|gb|ACB27242.1| hypothetical protein Mrad2831_5295 [Methylobacterium radiotolerans
JCM 2831]
Length = 1349
Score = 91.8 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 10/136 (7%)
Query: 14 FGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKP-ISRVGQAPKTLMLFRMQ--- 69
++ G + D+DV D + G+ RVG+AP+ ++++R
Sbjct: 139 VALIMGEVSGRALCLDIDVSDPTLAQAILALVDRHLGRTEFRRVGRAPRLVLIYRSDVSD 198
Query: 70 ----ETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTW--SIAPHALKVEELP 123
+T K + +E LA + + H KT + W + P E P
Sbjct: 199 PVRNKTYALDAKDDGGNDQAIEVLADRKPVTGFGAHHKTGAHFQWVGACRPDTHGPEHAP 258
Query: 124 LLTPDEVEYFFEFFDT 139
++T +VE F D
Sbjct: 259 VITQAQVEDFISAVDA 274
>gi|307149891|ref|YP_003890934.1| Primase 2 [Cyanothece sp. PCC 7822]
gi|306986691|gb|ADN18569.1| Primase 2 [Cyanothece sp. PCC 7822]
Length = 302
Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/229 (20%), Positives = 82/229 (35%), Gaps = 26/229 (11%)
Query: 12 NGFGILCGIGTHP-VYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQE 70
G GIL G + + A DVD + G+ + LF++
Sbjct: 74 PGVGILLGQNSKEFLIALDVDGYSAR--AYLQELIPHLPRTVAFTSGRPGRCQYLFKLPP 131
Query: 71 ----TNLKKQKSEEKIQGHLEFLAYGQQFVAY-NIHPKTQRAYTWSIAPHALKVEELPL- 124
K+ LE A GQQ V + HP T + Y W + +E+ +
Sbjct: 132 GHSIKPFKRITGPG---EALEIRATGQQSVLPPSPHPVTGQ-YFWLGG---CRPDEIEVA 184
Query: 125 LTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSH-NNRRYTNIEIRAFLSCFGEEFYN 183
+ P+++ + R K+ + + + ++R T ++ LS F +
Sbjct: 185 IIPEQIIDL-----AQSPKRTKKIQPITKAPLIREVRHDRATTIEAAKSALSLIHPNFAD 239
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+D WI + M++H+ S + W +L Y KW SF
Sbjct: 240 -DYDSWIRIGMSLHFI---SFSLLDDWDRWSQLSAKYQPGECYYKWASF 284
>gi|67925585|ref|ZP_00518913.1| hypothetical protein CwatDRAFT_0747 [Crocosphaera watsonii WH 8501]
gi|67852574|gb|EAM48005.1| hypothetical protein CwatDRAFT_0747 [Crocosphaera watsonii WH 8501]
Length = 288
Score = 89.9 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/224 (20%), Positives = 80/224 (35%), Gaps = 17/224 (7%)
Query: 13 GFGILCGIGTHP-VYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQE- 70
G GILCG + ++A D D + R G+ + L+++
Sbjct: 63 GIGILCGHNSKEFLFAIDCDGI---SAHRSLQRLGQLPPTVSFTSGRPGRCQYLYKLPSH 119
Query: 71 TNLKKQKSEEKIQGHLEFLA-YGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTPDE 129
+K K LE + Q + + HP T + Y W +P ++V P
Sbjct: 120 KQIKSCKVTTAPGEVLEIRGSHHQSVLPPSPHPITGQ-YRWVNSPADVEVAIAP------ 172
Query: 130 VEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEW 189
++ ++ D T K K+ RK S + T+ E L +Y +D W
Sbjct: 173 -QWLVQWIDLQTYKPSKPKNNRKPFHQNVSKLDTPSTSEEAAVALLDLIPSYYADDYDSW 231
Query: 190 IPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
I V MA+ + E W + + + KW +F+
Sbjct: 232 IKVGMALKSISPVLLEA---WDRWSRQSKKWKPGECAYKWRTFN 272
>gi|312113986|ref|YP_004011582.1| Primase 2 [Rhodomicrobium vannielii ATCC 17100]
gi|311219115|gb|ADP70483.1| Primase 2 [Rhodomicrobium vannielii ATCC 17100]
Length = 782
Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 44/246 (17%), Positives = 86/246 (34%), Gaps = 45/246 (18%)
Query: 14 FGILCGIGTH----PVYAFDVDVLDEQVVDRFNNEFQSCCGK------PISRVGQAPKTL 63
GI G + ++A D+D+ + + P + G +
Sbjct: 51 VGIRLGKPSKVEGLYLHAIDLDIRVPEAKSEALDRLDELISDGDLKELPCVQSGSGGASR 110
Query: 64 MLFRMQETNLKKQK--------SEEKIQGH----LEFLAYGQQFVAY-NIHPKTQRAYTW 110
+ + E + +K + + + H +E G+Q V +IHP T +AY W
Sbjct: 111 HFYFLTEDAFRSKKLAHSKHKFTGDDGKEHWEWEIELFGTGKQVVLPPSIHPDTGKAYRW 170
Query: 111 SIAPHALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEI 170
+ P + +P ++ D ++ + + +++ T E
Sbjct: 171 VLQPDLKR--GIPRISADLIDELV--------------GGDESTGFYENSEPLNLTINEA 214
Query: 171 RAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGS----AEGKEIVREWCKLGRTYDEKSFN 226
R +L + + D W+ V MA+ +E E E+ EW + G Y+
Sbjct: 215 RDYLDAIPD--WADDRDSWVRVGMALKHEFADDKALIKEAWELFDEWSRRGYGYNRAKNL 272
Query: 227 AKWDSF 232
A+W F
Sbjct: 273 AQWRGF 278
>gi|67923658|ref|ZP_00517127.1| hypothetical protein CwatDRAFT_2551 [Crocosphaera watsonii WH 8501]
gi|67854499|gb|EAM49789.1| hypothetical protein CwatDRAFT_2551 [Crocosphaera watsonii WH 8501]
Length = 956
Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 47/282 (16%), Positives = 81/282 (28%), Gaps = 73/282 (25%)
Query: 11 YNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQE 70
+ G G+ G + V A D D D P G+ + +L+R+
Sbjct: 96 WTGIGLRLGTVSGGVLAIDAD-GDLAEAKLQELSGGDLPLTPCWTSGKPGRRQLLYRISP 154
Query: 71 TNLKKQKS---EEKIQGHLEFLAYG-QQFVAYNIHPKTQRAYTWSIAPHA-----LKVEE 121
+K K+ + HLEF G Q + + HP+T + Y W ++P + +E
Sbjct: 155 EYWEKIKTVKIDCGQGQHLEFRWDGCQSVLPPSKHPETGQ-YHWLVSPEESAQRNAQNQE 213
Query: 122 LPLLTPDEVEYFF----------------------------------------------- 134
L ++V
Sbjct: 214 LTEKNGEDVATAIAPDWLIEFLLQQNQPVYSDSPSLKLPCTENSSSENAPHKPVNELQGG 273
Query: 135 ----EFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWI 190
+ I P K S+ W + R + ++ + +D+W+
Sbjct: 274 QTHSDESQPIYPPVYSSKGTYSPSQKWTDEDWARSYLEALASWRA--------DDYDQWV 325
Query: 191 PVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
V MA+ + G W + Y KW SF
Sbjct: 326 QVGMALQSVSDGL---LWDWEHWSRQSSKYKPGGCERKWRSF 364
>gi|32455419|ref|NP_862725.1| hypothetical protein pUH24_08 [Synechococcus elongatus PCC 7942]
gi|97589|pir||S20531 hypothetical protein F - Synechococcus sp. (strain PCC 7942)
plasmid pUH24
gi|247792|gb|AAB21875.1| repA [Synechococcus elongatus PCC 7942]
Length = 876
Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/226 (19%), Positives = 71/226 (31%), Gaps = 23/226 (10%)
Query: 13 GFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQETN 72
G G+L G + + A D D G+ + L+++ +
Sbjct: 68 GIGLLTGPASGGLIAVDFDGPTAHEALPEGLTLTELPPTVAYTSGKPGRHQRLYQVPQER 127
Query: 73 LKKQKSEEK---IQGHLEFLAYGQQFVAYNIHPKTQRAYTW--SIAPHALKVEELPLLTP 127
+++ LE Q V HP+T Y W AP ++V E P P
Sbjct: 128 WAAIATQKLHSPDGDLLELRWNKLQSVIVGQHPETGA-YRWVEGCAPWEIEVAEAP---P 183
Query: 128 DEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHD 187
+ ++ E D T P K K S R L+ Y ++
Sbjct: 184 ELLDA-MERQDRQTAP--------KSYKPIVSAPASDDEVAIARTMLAHVP-ASYADDYE 233
Query: 188 EWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYD-EKSFNAKWDSF 232
W+ V MA+ S + W +D + KW SF
Sbjct: 234 SWVAVGMALQSV---SDALLDDWIAWSAQSSKFDGNRKLERKWASF 276
>gi|218442562|ref|YP_002380883.1| primase [Cyanothece sp. PCC 7424]
gi|218175333|gb|ACK74064.1| Primase 2 [Cyanothece sp. PCC 7424]
Length = 305
Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 48/232 (20%), Positives = 73/232 (31%), Gaps = 32/232 (13%)
Query: 12 NGFGILCGIGTHP-VYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQE 70
G GIL G + A DVD D + + S G+ + LF++
Sbjct: 74 PGIGILLGHNKREFLIALDVD-GDSAIAY-LHRLIPSLPRTVAFTSGRLGRCQYLFKLPS 131
Query: 71 ----TNLKKQKSEEKIQGHLEFLAYGQQFVAY-NIHPKTQRAYTWSIA--PHALKVEELP 123
K LE + GQQ V + HP T + Y W P+ + V P
Sbjct: 132 NQSIKPFKVITGPG---EALEIRSTGQQSVLPPSPHPLTGQYY-WVGGCNPNEVNVALAP 187
Query: 124 --LLTPDEVEYFFEFFDTI-TTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
L+T + + P + + I + L+C
Sbjct: 188 PELITLSQSHSSKKKIQATDNNPFVSPVRGKLTTSI-----------EAALSALACI-HP 235
Query: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
Y +D WI + M++H S W + Y + KW SF
Sbjct: 236 SYADEYDSWIRIGMSLHSI---SYSLLHDWDSWSQSSAKYKPGECHYKWASF 284
>gi|172035639|ref|YP_001802140.1| hypothetical protein cce_0723 [Cyanothece sp. ATCC 51142]
gi|171697093|gb|ACB50074.1| hypothetical protein cce_0723 [Cyanothece sp. ATCC 51142]
Length = 732
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 52/248 (20%), Positives = 90/248 (36%), Gaps = 29/248 (11%)
Query: 5 DVDHYVYNGFGILCGIGTHPVYAFDVD------VLDEQVVDRFNNEFQSCCGKPISRVGQ 58
++ Y N G+ G + V A D D +++E S R G+
Sbjct: 65 ELCDYDVNAVGLALGKHSVNVVAIDHDGESCDKLIEELTGLSLKEALPSTVAFSSGRTGR 124
Query: 59 APKTL-----MLFRMQETNLKK-QKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRA-YTWS 111
K +L ++ +K +K E+ LEF G + HPKTQ Y W
Sbjct: 125 YQKLYSVSEDILNQLTNKQIKTGEKDEDGKSEQLEFRVNGYSIIM-GFHPKTQSYSYHWL 183
Query: 112 I--APHALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIE 169
+P + + LP E++ + + + + +K +K N + I
Sbjct: 184 DGCSPQEIDITPLP-------EWWLNIW--LNSEKTNKKEKKKSLSKINDIPNDLSSIIS 234
Query: 170 IRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRG----SAEGKEIVREWCKLGRTYDEKSF 225
L + F ++D+W V MA+H+E S ++ W + + +
Sbjct: 235 KCQNLLSQLKPFRCDNYDDWNRVGMALHHEAGDDPILSELLLDLWTNWSQNSNKFKDGEC 294
Query: 226 NAKWDSFD 233
KW SFD
Sbjct: 295 ATKWQSFD 302
>gi|218442267|ref|YP_002380595.1| primase [Cyanothece sp. PCC 7424]
gi|218175408|gb|ACK74138.1| Primase 2 [Cyanothece sp. PCC 7424]
Length = 1287
Score = 75.6 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 43/246 (17%), Positives = 78/246 (31%), Gaps = 28/246 (11%)
Query: 5 DVDHYVYNGFGILCG------IGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQ 58
++ GFG++ G GT+ + A D+D D+ +S P
Sbjct: 82 EIKKIQPQGFGVITGNSLTTQQGTYTLMAVDLD--GASATDKMLELSRSKPLPPTVAFTS 139
Query: 59 A-P-KTLMLFRMQETN-----LKKQK----SEEKIQGHLEFL-AYGQQFVAYNIHPKTQR 106
P + LF + E KK K ++ +E + Q + ++HP T +
Sbjct: 140 TLPGRCQYLFLVPEKFKNLIRTKKIKTGVVGDDGKPEQIELRYSNLQSVLPPSVHPDTGQ 199
Query: 107 AYTWSIAPHALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYT 166
Y W ++EL + + D + + N +
Sbjct: 200 -YHWLEG---CAIDELEIALAPDWILEQMLIDKSPLLPLSPPPRLSSTAQKNNSNKQWSD 255
Query: 167 NIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFN 226
++L+ + +D+W+ V MA+H W + Y
Sbjct: 256 IDFAISYLNALSSFRAD-DYDDWLAVGMALHSVDDSL---LSEWDNWSRTSNKYKPGDCE 311
Query: 227 AKWDSF 232
KW SF
Sbjct: 312 KKWKSF 317
>gi|291336798|gb|ADD96333.1| primase 2 [uncultured organism MedDCM-OCT-S08-C700]
Length = 364
Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/234 (17%), Positives = 74/234 (31%), Gaps = 39/234 (16%)
Query: 13 GFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRV---GQAPKTLMLFRMQ 69
G G+ CG + + D D S P S + G+ + +++++
Sbjct: 50 GIGVCCGTPSGGLLFLDHD--GPSAAKILGEWGFSLSSLPPSWMVTSGRVGRFQIIYKVP 107
Query: 70 ETNLKKQKS---------EEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTW--SIAPHALK 118
E K K+ E+ +E G Q + HP T Y W + +P L
Sbjct: 108 EKYWSKIKTRKYQTGVKDEDGSVEQIELRWDGTQSIVSGSHPMTD-GYRWMDARSPRDLS 166
Query: 119 VEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFG 178
+ E PL +K+K+ + + + + R+ L
Sbjct: 167 IAEAPL-----------AIIKKMMELNKKKTPQIQTLNSDTD--------KARSLLQSIN 207
Query: 179 EEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+ +D W+ + MA H + G + Y KW SF
Sbjct: 208 PSRLD-DYDIWLKIGMAAH--SVGDDSLLSDWENLSQKNSKYKSGECEKKWSSF 258
>gi|331028101|ref|YP_004421815.1| integrase [Roseobacter phage RDJL Phi 1]
gi|301341564|gb|ADK73448.1| integrase [Roseobacter phage RDJL Phi 1]
Length = 802
Score = 74.1 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 70/183 (38%), Gaps = 24/183 (13%)
Query: 53 ISRVGQAPKTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYN-IHPKTQRAYTWS 111
RV L ++ + ++ + S +EF ++G+Q V+ IHP T+ Y+W
Sbjct: 112 FPRVETGSGGLHIYMSKPEDVSTRDSLNDQYPGVEFKSFGRQVVSAGSIHPDTKLPYSW- 170
Query: 112 IAPHALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIR 171
D + + T + P+ R+ + + + E+
Sbjct: 171 ----------------DFLYPELDELGTPSAPKLLIDLIRRPT-GSAATGGGEHDQEELA 213
Query: 172 AFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKS--FNAKW 229
L E ++ HD W+ ++ A H+ T G +G++ EWC Y + +W
Sbjct: 214 EMLDQLDPEDFS-DHDSWLTLMQACHHATAG--DGRQEFIEWCTRDPEYSDHGTIIGLRW 270
Query: 230 DSF 232
DS
Sbjct: 271 DSL 273
>gi|85709926|ref|ZP_01040991.1| primase, putative [Erythrobacter sp. NAP1]
gi|85688636|gb|EAQ28640.1| primase, putative [Erythrobacter sp. NAP1]
Length = 774
Score = 71.8 bits (174), Expect = 7e-11, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 25/150 (16%)
Query: 86 LEFLAYGQQFVAYN-IHPKTQRAYTWSIAPHALKVEELPLLTPDEVEYFFEFFDTITTPR 144
+EF G+Q VA IHP T Y W P F D
Sbjct: 145 IEFKTVGRQVVAPGSIHP-TGELYRWEGEPVG----------------MFGAPDAPDRLL 187
Query: 145 DKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSA 204
+ + + K S + Y+ E+ + L E + H +W+ ++MA H+ T G
Sbjct: 188 ESARRHSKPSTVPSRCGV--YSPEELASMLDALDPEDFE-EHADWLEIMMACHHATAG-- 242
Query: 205 EGKEIVREWCKLGRTYDE--KSFNAKWDSF 232
+G+E EW Y + + ++WDS
Sbjct: 243 DGREEFIEWSTSDPAYADHAEEIASRWDSL 272
>gi|307149700|ref|YP_003891008.1| primase 2 [Cyanothece sp. PCC 7822]
gi|306986766|gb|ADN18643.1| Primase 2 [Cyanothece sp. PCC 7822]
Length = 1199
Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/249 (17%), Positives = 77/249 (30%), Gaps = 36/249 (14%)
Query: 5 DVDHYVYNGFGILCGIG------THPVYAFDVDVLDEQVVDRFNNEFQSCCGKPIS---- 54
++ GFG++ G T+ + A D+D ++ S P
Sbjct: 64 EIKKIQLQGFGVITGTSLTREHETYTLMAVDLD--GASATNKMLELSGSNPLPPTVAFTS 121
Query: 55 -RVGQ------APKTLM-LFRMQETNLKKQKSEEKIQGHLEFL-AYGQQFVAYNIHPKTQ 105
R G+ P+ L L R ++ ++ +E + Q + ++HP T
Sbjct: 122 TRPGRCQYLFLVPEKLKNLIRTKKIKTGVV-GDDGKPEQIELRYSNLQSVLPPSVHPTTG 180
Query: 106 RAYTWSIAPHALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRY 165
+ Y W ++E+ + + F D + NR
Sbjct: 181 Q-YHWVEG---CAIDEIEIALAPDWILEQMFIDKSSPSSPALNL-----SYTTHTYNRGK 231
Query: 166 TNIEIRAFLSCFG--EEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEK 223
+I +S F +D+W+ V MA+H W + Y
Sbjct: 232 QWSDIDFAISYLNALSPFRADDYDDWVAVGMALHSVDDSL---LTEWDNWSRSSSKYKPG 288
Query: 224 SFNAKWDSF 232
KW SF
Sbjct: 289 DCEKKWKSF 297
>gi|118581963|ref|YP_903213.1| hypothetical protein Ppro_3564 [Pelobacter propionicus DSM 2379]
gi|118504673|gb|ABL01156.1| hypothetical protein Ppro_3564 [Pelobacter propionicus DSM 2379]
Length = 734
Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Query: 126 TPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGS 185
T E+ + + K R+ + + ++ + I+ + +
Sbjct: 238 TEQEIVEGLK-LELRQKNEPKTAIERQHNLGFDKQIDQEANDTSIQKIEALLNRIDADCG 296
Query: 186 HDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDE-KSFNAKWDSF 232
+D+W+ V MA+ +ET GS EG + W G Y K KW SF
Sbjct: 297 YDDWLHVGMAVFHETSGSDEGLALFDRWSSKGSKYKGIKEIEYKWRSF 344
>gi|92118040|ref|YP_577769.1| hypothetical protein Nham_2527 [Nitrobacter hamburgensis X14]
gi|91800934|gb|ABE63309.1| hypothetical protein Nham_2527 [Nitrobacter hamburgensis X14]
Length = 756
Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/212 (17%), Positives = 62/212 (29%), Gaps = 29/212 (13%)
Query: 28 FDVD---VLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQETNLKKQKSEEKIQG 84
D+D D V P G L FR + + E
Sbjct: 108 IDIDPRRFPDSDDVLARFLRDFDLPAHPFVLTGGGGYHLY-FR--KPAEDIVRYEHDNYP 164
Query: 85 HLEFLAYGQQFVAYN-IHPKTQRAYTWSIAPHALKVEELPLLTPDEVEYFFEFFDTITTP 143
EF G V+ +HP T R Y + P + E P++ ++
Sbjct: 165 GFEFRTSGHYVVSAGSVHPDTGRLYRFDDDPLRCSLSEAPMMPDRLLDAI---------- 214
Query: 144 RDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGS 203
RK + S + +L + +W ++MA H+ T G+
Sbjct: 215 -------RKPNIEASSDEAGALDPETLAEWLVDVDPTEFKDQR-KWQDMMMACHHATNGT 266
Query: 204 AEGKEIVREWCKLGRTYDE--KSFNAKWDSFD 233
G + W Y + + +WD +
Sbjct: 267 --GVDEFIVWSTSDPEYSDYSEVIRQRWDPLE 296
>gi|153213459|ref|ZP_01948770.1| integrase [Vibrio cholerae 1587]
gi|124115923|gb|EAY34743.1| integrase [Vibrio cholerae 1587]
Length = 792
Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 46/230 (20%), Positives = 87/230 (37%), Gaps = 29/230 (12%)
Query: 14 FGILCGIGTHPVYAFDVDVLDEQVVDRFN--NEFQSCCGK-PISRVGQAPK--TLMLFRM 68
G+ CG ++A DVDV D++ F + + GK P +++ + T +F+
Sbjct: 89 IGLACGKNGG-IFAIDVDVEDKKGNKGFLALDMLEQEFGKLPETQIQRTASGGTHYIFQW 147
Query: 69 QETNLKKQKSEEKIQGHLEFLA-----YGQQFVAYNIHPKTQRAYTWSIAPHALKVEELP 123
+ + S KI ++ VAY P R + + + E+P
Sbjct: 148 TQ---GAKTSSGKIAKAIDTRGGDEHSCRSHIVAY---PSRVRNGGYEMVATTVAPAEIP 201
Query: 124 LLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYN 183
+ + R +K R +I +YT ++ L +
Sbjct: 202 SWVLEALAK---------PDRSSKKQSRGSEEITDDDIENKYTPRQLWKMLDFINPD--E 250
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
+DEW+ + AIH + + +G E+ W + G Y+ + +W +FD
Sbjct: 251 LEYDEWLMCLQAIHSQYPDA-KGFELADRWSQRGSRYEPNEVSIRWGAFD 299
>gi|295096871|emb|CBK85961.1| Predicted P-loop ATPase and inactivated derivatives [Enterobacter
cloacae subsp. cloacae NCTC 9394]
Length = 728
Score = 68.3 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 39/193 (20%), Positives = 60/193 (31%), Gaps = 16/193 (8%)
Query: 17 LCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP--KTLMLFRMQETNLK 74
+C H A D D DE + G+ R +A K L L ++ K
Sbjct: 87 ICVRTGHGWLALDCDSEDEDIQADIRKTLVQLLGELPPRRWRANSNKCLYLLAVEGDFRK 146
Query: 75 KQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTPDEVE--- 131
+ G +E LA GQQFVA H + W +E P++T D++E
Sbjct: 147 RIHRLAGDMGIIELLANGQQFVACGTH-SSGARIEWDGGL----PDEPPVITADQLETLW 201
Query: 132 -YFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWI 190
E T R S + ++ + G + +I
Sbjct: 202 QRLAEQLPVSVTTEAGSTKMRDRSTFTPGATDETAEYLDANGWTLLDGTNG-----ERYI 256
Query: 191 PVVMAIHYETRGS 203
+ T G
Sbjct: 257 RCPFEDGHSTGGD 269
>gi|262043412|ref|ZP_06016537.1| virulence-associated E family protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259039238|gb|EEW40384.1| virulence-associated E family protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 729
Score = 68.3 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 39/203 (19%), Positives = 61/203 (30%), Gaps = 19/203 (9%)
Query: 7 DHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCG--KPISRVGQAPKTLM 64
G + G G A D D D V + + G P R + K L
Sbjct: 80 SKEPDYGICVRTGNGW---LALDCDSEDVDVQQKIRDLLAQLLGVVPPRRRRANSNKCLY 136
Query: 65 LFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPL 124
L ++ K+ E G +E LA GQQFVA H + W ++ P
Sbjct: 137 LLGVEGDFRKRIHRLEGELGIIELLANGQQFVACGTH-SSGARIEWDNEL----PDDPPA 191
Query: 125 LTPDEVE----YFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
+T D++E + T R S + ++ + G
Sbjct: 192 VTTDQLETLWQQLADVLPVSVTTEAGSSKMRDRSTFTPGATDETAEYLDANGWTLLDGTN 251
Query: 181 FYNGSHDEWIPVVMAIHYETRGS 203
+ +I + T G
Sbjct: 252 G-----ERYIRCPFEDGHSTGGD 269
>gi|291335727|gb|ADD95331.1| hypothetical protein cce_0723 [uncultured phage MedDCM-OCT-S05-C22]
Length = 651
Score = 68.3 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 44/227 (19%), Positives = 76/227 (33%), Gaps = 26/227 (11%)
Query: 14 FGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQETNL 73
G+ GI + + DVD + S G PI +A LFR+ E
Sbjct: 64 VGVFTGIRGNGIVILDVD---RNLSKYLKAWGSSLDGAPIITSTKANAAKYLFRVPEELW 120
Query: 74 KKQKSEEKIQ---GHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTPDEV 130
K + G E L +G+Q V + +P + + ++P PD +
Sbjct: 121 ADVKGHGLRKEDGGDYEIL-WGRQGVVFGAYPG-GKVSKPGQYLLDGDLADIPT-APDWL 177
Query: 131 EYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWI 190
+ ++ + + R ++ + E + +S G+ G+ D W+
Sbjct: 178 LAEMKQPPRTINKKELDFTDRTQDEVQQ-------IIFECLSVISPQGK----GTRDHWV 226
Query: 191 PVVMAIHYETRGSAEGKEIVREWCKLGRTY-----DEKSFNAKWDSF 232
+ MAIH + G + W Y D W SF
Sbjct: 227 KIGMAIHSALP-TDMGLHLWASWSCQDPDYASEWEDSNPCEEVWYSF 272
>gi|86750422|ref|YP_486918.1| hypothetical protein RPB_3311 [Rhodopseudomonas palustris HaA2]
gi|86573450|gb|ABD08007.1| hypothetical protein RPB_3311 [Rhodopseudomonas palustris HaA2]
Length = 1082
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/216 (19%), Positives = 69/216 (31%), Gaps = 24/216 (11%)
Query: 8 HYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFR 67
G GI CG + + A D+D D +++ G+ T+ +R
Sbjct: 73 RDPECGIGIACGF--NNLVAVDIDRDDL-----IEPLLAVLPPMVVAKRGRKGLTVF-YR 124
Query: 68 MQETNLKKQKSEEKIQGHLEFLAYGQQFVAY-NIHPKTQRAYTWSI--APHALKVEELPL 124
E K + G L+F+A G Q V IHP T + Y W+ VEELPL
Sbjct: 125 GAEHWPKANYT-----GFLDFIARGAQTVLPPTIHPDTGQPYAWTTERTLLDTPVEELPL 179
Query: 125 LTPD---EVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHN-NRRYTNIEIRAFLSCFGEE 180
LT D +E + ++ ++ + + + +
Sbjct: 180 LTADHRKAMEAVLAAHGWQPKEDRQARTAVTAARSSAHSAVSDYFALSDAVNSAALANIG 239
Query: 181 FY----NGSHDEWIPVVMAIHYETRGSAEGKEIVRE 212
+ N W R S G++
Sbjct: 240 AWAPALNLPKGHWQGTAYRGVAHWRNSGSGRDSAAR 275
>gi|48696691|ref|YP_024985.1| putative integrase [Vibrio phage VP5]
gi|40806154|gb|AAR92072.1| putative integrase [Vibrio phage VP5]
Length = 762
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 51/227 (22%), Positives = 88/227 (38%), Gaps = 27/227 (11%)
Query: 15 GILCGIGTHPVYAFDVDVLDEQVVDRFNNEF--QSCCGKPISRVGQAPK--TLMLFR--- 67
GI CG V+A D+DV D + F+N + GK ++ + + P LF+
Sbjct: 80 GIACGKRGG-VFAVDIDVEDSKGNRGFDNLAILEEKYGKLVAPIQETPTGGRHYLFQWDK 138
Query: 68 -MQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLT 126
+ ++ K K+ + G + + VA+ YTWS+ ++P +
Sbjct: 139 YAKSSSGKIAKAIDTRGGDED--SCKSHIVAWPSVRDEGE-YTWSMPTLG----DVPEIP 191
Query: 127 PDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSH 186
D + P R +I + RYT +I L + +
Sbjct: 192 K-------WISDALGVPWTG-NMNRGSEEIDEDDLETRYTPRQIWRMLEYIDPD--ELEY 241
Query: 187 DEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
DEW+ V+ A+H + +G E+ W + G Y + +W SFD
Sbjct: 242 DEWLAVLQAVHSQYPD-DQGYELADRWSQRGARYKPDEVSIRWQSFD 287
>gi|48696649|ref|YP_024428.1| integrase [Vibrio phage VP2]
gi|40950047|gb|AAR97638.1| integrase [Vibrio phage VP2]
Length = 762
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 51/227 (22%), Positives = 88/227 (38%), Gaps = 27/227 (11%)
Query: 15 GILCGIGTHPVYAFDVDVLDEQVVDRFNNEF--QSCCGKPISRVGQAPK--TLMLFR--- 67
GI CG V+A D+DV D + F+N + GK ++ + + P LF+
Sbjct: 80 GIACGKRGG-VFAVDIDVEDSKGNRGFDNLAILEEKYGKLVAPIQETPTGGRHYLFQWDK 138
Query: 68 -MQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLT 126
+ ++ K K+ + G + + VA+ YTWS+ ++P +
Sbjct: 139 YAKSSSGKIAKAIDTRGGDED--SCKSHIVAWPSVRDEGE-YTWSMPTLG----DVPEIP 191
Query: 127 PDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSH 186
D + P R +I + RYT +I L + +
Sbjct: 192 K-------WISDALGVPWTG-NMNRGSEEIDEDDLETRYTPRQIWRMLEYIDPD--ELEY 241
Query: 187 DEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
DEW+ V+ A+H + +G E+ W + G Y + +W SFD
Sbjct: 242 DEWLAVLQAVHSQYPD-DQGYELADRWSQRGARYKPDEVSIRWQSFD 287
>gi|86158263|ref|YP_465048.1| hypothetical protein Adeh_1839 [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774774|gb|ABC81611.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 751
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 38/107 (35%)
Query: 126 TPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGS 185
T D + + + +S + + E+ S +
Sbjct: 162 TYDGAPAELLDKQKELDALLRALAPKATVAATRSDEHVPLSAQEVDKIRSALDAIDPDVG 221
Query: 186 HDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
HDEW+ V MA+H+ GSAEG + EW G Y +W SF
Sbjct: 222 HDEWLRVGMALHFGFEGSAEGLALWNEWSAGGGKYKNGEPADRWRSF 268
>gi|220915108|ref|YP_002490414.1| hypothetical protein Mnod_7757 [Methylobacterium nodulans ORS 2060]
gi|219952962|gb|ACL63348.1| hypothetical protein Mnod_7757 [Methylobacterium nodulans ORS 2060]
Length = 885
Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/264 (17%), Positives = 72/264 (27%), Gaps = 41/264 (15%)
Query: 2 VATDVDHYVYNGF-------GILCGIGTH-----PVYAFDVDVLDEQVVDRFNNEFQSCC 49
A DV+ + +G G G V A D DV N +
Sbjct: 55 TAADVERWQRSGLPGQRPNMGFNLGPQPGLPEGEHVVAVDADVFTPAAATAVNEILERRL 114
Query: 50 GKPISRVGQAPKTLMLF------------RMQETNLKKQKSEEKIQGH--LEFLAYGQQF 95
R+G K F R Q + + + H +E L GQQ
Sbjct: 115 PGAPHRLGNPAKVGTRFVRTKTADGSEPVRRQGRRFIFDGAPDTKENHNRVELLGQGQQS 174
Query: 96 VAYNIHPKTQRAYTWSI--APHALKVEELPLLTPDEVEYFFEFFDTITTPRDKE----KS 149
V + HP YTW + L E LPL+ DE+ D + +
Sbjct: 175 VVHGAHP-CGALYTWPDGISIVELHPEALPLIPIDELNAIIAECDAAMEAVGGKVVSGAT 233
Query: 150 YRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNG-SHDEWI---PVVMAIHYETRGSAE 205
+ + + + + LS G + +W+ A+ G
Sbjct: 234 FSRSGRNGGGADLTPLVEADAEVLLSGLGSVRNDLSDRGDWVMFTKAFAALCVPALGEGR 293
Query: 206 GKE----IVREWCKLGRTYDEKSF 225
+ W T D
Sbjct: 294 VVDALLGFTDRWEAAPETGDPDEI 317
>gi|291335967|gb|ADD95559.1| hypothetical protein [uncultured phage MedDCM-OCT-S09-C37]
Length = 288
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 26/215 (12%)
Query: 14 FGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQETNL 73
GI GI + + DVD + +S G P+ + LFR+ E
Sbjct: 69 VGIFTGIRGNGIVFLDVD---RNLKRCMKQWGESLAGAPMVTSTKQNAAKFLFRVPEKLW 125
Query: 74 KKQKSEEKIQGHLEFL-AYGQQFVAYNIHP--KTQRA--YTWSIAPHALKVEELPLLTPD 128
K+ K + E L +Q V + +P Y + +++ + PD
Sbjct: 126 KEVKGRGLGKQDYEILWNSKKQGVIFGAYPGGDNSEPGEYKFEGDLNSIP------VAPD 179
Query: 129 EVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDE 188
+ RD + S R +I++ ++ L + GS D
Sbjct: 180 WLLAEMREPPKTIIKRDLDFSDRSDDEIFQ----------IVKDCLDVIPNKG-KGSRDH 228
Query: 189 WIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEK 223
W+ + MAI+ + G + W ++E+
Sbjct: 229 WVKIGMAINSALP-TEAGMMLWSSWSSDDPDFEEE 262
>gi|260845231|ref|YP_003223009.1| putative replication protein [Escherichia coli O103:H2 str. 12009]
gi|257760378|dbj|BAI31875.1| probable replication protein [Escherichia coli O103:H2 str. 12009]
Length = 728
Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 51/163 (31%), Gaps = 11/163 (6%)
Query: 17 LCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP--KTLMLFRMQETNLK 74
+C H A D D DE + G+ R +A K L L + K
Sbjct: 87 ICVRTGHGWLALDCDSEDEDIQADIRKTLVQLLGESPPRRWRANSNKCLYLLAVDGDFRK 146
Query: 75 KQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTPDEVE--- 131
+ G +E LA GQQFVA H + W +E P +T +++E
Sbjct: 147 RIHRLAGDMGIIELLANGQQFVACGTH-SSGARIEWDGGL----PDEPPAITGEQLETLW 201
Query: 132 -YFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAF 173
E T R S + ++ +
Sbjct: 202 QRLAEQLPVSVTTEAGNTKMRDRSAFTPGATDDTAEYLDANGW 244
>gi|254517351|ref|ZP_05129408.1| Primase C terminal 2 family protein [gamma proteobacterium NOR5-3]
gi|219674189|gb|EED30558.1| Primase C terminal 2 family protein [gamma proteobacterium NOR5-3]
Length = 703
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 70/228 (30%), Gaps = 15/228 (6%)
Query: 7 DHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLF 66
+ Y + +L + D D D + P V A +
Sbjct: 51 NKYPNHELAVLL---NDELLVLDADTPDAVSALHQLLKSYEI--TPTLSVNSARGCHVYL 105
Query: 67 RMQETNLKKQKSEEKIQGHLEF-LAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLL 125
R K + K + G+ A+ P T ++ +V +LP +
Sbjct: 106 RRASGTYAKSDAPNKDANPAAIDIKTGRAITAFP--PSTGKS---IDVDEIERVSDLPEV 160
Query: 126 TPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGS 185
++ + +++ + S + + I L+ +
Sbjct: 161 DQVFIDAVYRHNGRDAPRPLSKQTPPATVLVPLSSSELEHKRTRIAELLAHID---PDTG 217
Query: 186 HDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTY-DEKSFNAKWDSF 232
+ +W+ + +AI+ E G+ G ++ EW G Y + KW F
Sbjct: 218 YHDWLRIGIAIYVELEGAPVGFQLFDEWSAKGTKYPGTAALQDKWGKF 265
>gi|331648291|ref|ZP_08349380.1| virulence-associated E family protein [Escherichia coli M605]
gi|331042840|gb|EGI14981.1| virulence-associated E family protein [Escherichia coli M605]
Length = 728
Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/193 (19%), Positives = 58/193 (30%), Gaps = 16/193 (8%)
Query: 17 LCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP--KTLMLFRMQETNLK 74
+C H A D D DE + G+ R +A K L L + K
Sbjct: 87 ICVRTGHGWLALDCDSEDEDIQADIRKTLVQLLGELPPRRWRANSNKCLYLLAVDGDFRK 146
Query: 75 KQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTPDEVE--- 131
+ G +E LA GQQFVA H + W +E P +T +++E
Sbjct: 147 RIHRLAGDMGIIELLANGQQFVACGTH-SSGARIEWDGGL----PDEPPAITGEQLETLW 201
Query: 132 -YFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWI 190
E T R S + ++ + G + +I
Sbjct: 202 QRLAEQLPVSVTTEAGSTKMRDRSTFTPGATDDTAEYLDANGWTLLDGANG-----ERYI 256
Query: 191 PVVMAIHYETRGS 203
+ T G
Sbjct: 257 RCPFEDGHSTGGD 269
>gi|191172659|ref|ZP_03034198.1| replication protein [Escherichia coli F11]
gi|190907132|gb|EDV66732.1| replication protein [Escherichia coli F11]
Length = 684
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 51/163 (31%), Gaps = 11/163 (6%)
Query: 17 LCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP--KTLMLFRMQETNLK 74
+C H A D D DE + G+ R +A K L L + K
Sbjct: 41 ICVRTGHGWLALDCDSEDEDIQADIRKTLVQLLGELPPRRWRANSNKCLYLLAVDGDFRK 100
Query: 75 KQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTPDEVE--- 131
+ G +E LA GQQFVA H + W +E P +T +++E
Sbjct: 101 RIHRLAGDMGIIELLANGQQFVACGTH-SSGARIEWDGGL----PDEPPAITGEQLETLW 155
Query: 132 -YFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAF 173
E T R S + ++ +
Sbjct: 156 QRLAEQLPVSVTTEAGNTKMRDRSAFTPGATDDTAEYLDANGW 198
>gi|324014360|gb|EGB83579.1| virulence-associated protein E [Escherichia coli MS 60-1]
Length = 730
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 51/163 (31%), Gaps = 11/163 (6%)
Query: 17 LCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP--KTLMLFRMQETNLK 74
+C H A D D DE + G+ R +A K L L + K
Sbjct: 87 ICVRTGHGWLALDCDSEDEDIQADIRKTLVQLLGELPPRRWRANSNKCLYLLAVDGDFRK 146
Query: 75 KQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTPDEVE--- 131
+ G +E LA GQQFVA H + W +E P +T +++E
Sbjct: 147 RIHRLAGDMGIIELLANGQQFVACGTH-SSGARIEWDGGL----PDEPPAITGEQLETLW 201
Query: 132 -YFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAF 173
E T R S + ++ +
Sbjct: 202 QRLAEQLPVSVTTEAGNTKMRDRSAFTPGATDDTAEYLDANGW 244
>gi|291283822|ref|YP_003500640.1| putative P-loop ATPase-like protein [Escherichia coli O55:H7 str.
CB9615]
gi|290763695|gb|ADD57656.1| Predicted P-loop ATPase-like protein [Escherichia coli O55:H7 str.
CB9615]
Length = 728
Score = 65.6 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 51/163 (31%), Gaps = 11/163 (6%)
Query: 17 LCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP--KTLMLFRMQETNLK 74
+C H A D D DE + G+ R +A K L L + K
Sbjct: 87 ICVRTGHGWLALDCDSEDEDIQADIRKTLVQLLGELPPRRWRANSNKCLYLLAVDGDFRK 146
Query: 75 KQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTPDEVE--- 131
+ G +E LA GQQFVA H + W +E P +T +++E
Sbjct: 147 RIHRLAGDMGIIELLANGQQFVACGTH-SSGARIEWDGGL----PDEPPAITGEQLETLW 201
Query: 132 -YFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAF 173
E T R S + ++ +
Sbjct: 202 QRLAEQLPVSVTTEAGNTKMRDRSAFTPGATDDTAEYLDANGW 244
>gi|218555124|ref|YP_002388037.1| hypothetical protein ECIAI1_2654 [Escherichia coli IAI1]
gi|218361892|emb|CAQ99492.1| conserved hypothetical protein; putative virulence-associated
protein E [Escherichia coli IAI1]
Length = 728
Score = 65.6 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 51/163 (31%), Gaps = 11/163 (6%)
Query: 17 LCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP--KTLMLFRMQETNLK 74
+C H A D D DE + G+ R +A K L L + K
Sbjct: 87 ICVRTGHGWLALDCDSEDEDIQADIRKTLVQLLGELPPRRWRANSNKCLYLLAVDGDFRK 146
Query: 75 KQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTPDEVE--- 131
+ G +E LA GQQFVA H + W +E P +T +++E
Sbjct: 147 RIHRLAGDMGIIELLANGQQFVACGTH-SSGARIEWDGGL----PDEPPAITGEQLETLW 201
Query: 132 -YFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAF 173
E T R S + ++ +
Sbjct: 202 QRLAEQLPVSVTTEAGNTKMRDRSAFTPGATDDTAEYLDANGW 244
>gi|332088051|gb|EGI93176.1| hypothetical protein SB521682_2984 [Shigella boydii 5216-82]
Length = 753
Score = 65.2 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 10/162 (6%)
Query: 10 VYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP--KTLMLFR 67
G + G G V A D D+ D + + N SC G+ R +A K L L
Sbjct: 84 PDYGICVRTGDG---VVALDCDINDAGMQEIVRNIILSCLGELPPRRWRADSHKCLYLIA 140
Query: 68 MQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTP 127
+ K+ E +E LA GQQFVA HP W ++ +T
Sbjct: 141 VDGDYRKRGHRLEGENKQIELLAKGQQFVACGTHP-AGERIQWDCGLPGEPLK----ITS 195
Query: 128 DEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIE 169
+++E ++ +D + + + ++
Sbjct: 196 EQLESLWQRLADNLPVKDSYTAGAGRQRDLSCVDPSATDDVA 237
>gi|75812724|ref|YP_320341.1| hypothetical protein Ava_C0063 [Anabaena variabilis ATCC 29413]
gi|75705480|gb|ABA25152.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
Length = 332
Score = 65.2 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 39/207 (18%), Positives = 64/207 (30%), Gaps = 10/207 (4%)
Query: 31 DVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQETNLKKQKSEEKIQGHLEFLA 90
D E + DR R ++ + ++ + ++K +K + HLEF
Sbjct: 116 DTPMESLCDRAQQYLPPTIAFTSGRKYRSQRLYLIPNSKACDVKSRKIKTGKDEHLEFRG 175
Query: 91 YG-QQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKS 149
+ + HP+ R Y W P E + PD V T + K
Sbjct: 176 KNLASILPPSFHPE-GRNYRWL--PGCSPSERQIEIAPDWVIAQMLVKQEKTRKFNLPKE 232
Query: 150 YRKLSKIWKSHN---NRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEG 206
+ TNI+ L + + WI V MA+ + +
Sbjct: 233 KYNRRYGVDRYAHLIPSIETNIQTALVLLEVIHPRFADDYHSWIQVGMALKSVSPILFKA 292
Query: 207 KEIVREWCKLGRTYDEKSFNAKWDSFD 233
W +L Y KW SF+
Sbjct: 293 ---WDTWSQLSPKYKPGECAYKWQSFN 316
>gi|189426164|ref|YP_001953341.1| P4 family phage/plasmid primase [Geobacter lovleyi SZ]
gi|189422423|gb|ACD96821.1| phage/plasmid primase, P4 family [Geobacter lovleyi SZ]
Length = 695
Score = 65.2 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 47/138 (34%), Gaps = 17/138 (12%)
Query: 99 NIH----PKTQRAYTWSIAPHALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLS 154
+H P+T + I + EE LL + E + + +
Sbjct: 96 GVHNRKAPETPKPVKVGIIRERISPEEFRLLIEKALLAKGEPLPAVKLDQVAADEFSIK- 154
Query: 155 KIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWC 214
T +I S +G +EWI V M +H+E GS EG + EW
Sbjct: 155 -----------TPADIANLKSALPAISPDG-REEWICVGMGLHHEFAGSEEGLALWEEWS 202
Query: 215 KLGRTYDEKSFNAKWDSF 232
+ + ++ KW F
Sbjct: 203 RGSTKFKDEECPEKWAGF 220
>gi|323173146|gb|EFZ58777.1| hypothetical protein ECLT68_2560 [Escherichia coli LT-68]
Length = 565
Score = 65.2 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 10/162 (6%)
Query: 10 VYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP--KTLMLFR 67
G + G G V A D D+ D + + N SC G+ R +A K L L
Sbjct: 54 PDYGICVRTGDG---VVALDCDINDAGMQEIVRNIILSCLGELPPRRWRADSHKCLYLIA 110
Query: 68 MQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTP 127
+ K+ E +E LA GQQFVA HP W ++ +T
Sbjct: 111 VDGDYRKRGHRLEGENKQIELLAKGQQFVACGTHP-AGERIQWDCGLPGEPLK----ITS 165
Query: 128 DEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIE 169
+++E ++ +D + + + ++
Sbjct: 166 EQLESLWQRLADNLPVKDSYTAGAGRQRDLSCVDPSATDDVA 207
>gi|62362410|ref|YP_224275.1| hypothetical protein LPPPVgp44 [Listonella phage phiHSIC]
gi|58220032|gb|AAW67544.1| putative phage protein [Listonella phage phiHSIC]
Length = 815
Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 24/156 (15%)
Query: 77 KSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTPDEVEYFFEF 136
KS+ ++F + G V K+ Y ++ P + + E
Sbjct: 127 KSKLGQYNGVDFKSSG-FVVGAGSLHKSGLLYE--------SIKGAPSDISEPPKKLVEL 177
Query: 137 FDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAI 196
+ P++ S + +I+ L C + +++W+ + MAI
Sbjct: 178 LEKKVNPKNSAFSL----------PEDKVDQQKIQDMLDCID---PDCDYEDWLHIGMAI 224
Query: 197 HYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
H ET G EG ++ W G Y++K + KW SF
Sbjct: 225 HDETCG--EGFDLWDAWSSNGSKYNQKEMDFKWHSF 258
>gi|194430133|ref|ZP_03062636.1| replication protein [Escherichia coli B171]
gi|194411843|gb|EDX28162.1| replication protein [Escherichia coli B171]
gi|323159199|gb|EFZ45189.1| virulence-associated protein E family protein [Escherichia coli
E128010]
Length = 642
Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 49/158 (31%), Gaps = 11/158 (6%)
Query: 22 THPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP--KTLMLFRMQETNLKKQKSE 79
H A D D DE + G+ R +A K L L + K+
Sbjct: 4 GHGWLALDCDSEDEDIQADIRKTLVQLLGELPPRRWRANSNKCLYLLAVDGDFCKRIHRL 63
Query: 80 EKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTPDEVE----YFFE 135
G +E LA GQQFVA H + W +E P +T +++E E
Sbjct: 64 AGDMGIIELLANGQQFVACGTH-SSGARIEWDGGL----PDEPPAITGEQLETLWQRLAE 118
Query: 136 FFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAF 173
T R S + ++ +
Sbjct: 119 QLPVSVTTEAGNTKMRDRSAFTPGATDDTAEYLDANGW 156
>gi|220915119|ref|YP_002490424.1| hypothetical protein Mnod_7767 [Methylobacterium nodulans ORS 2060]
gi|219952973|gb|ACL63358.1| hypothetical protein Mnod_7767 [Methylobacterium nodulans ORS 2060]
Length = 846
Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/180 (21%), Positives = 56/180 (31%), Gaps = 21/180 (11%)
Query: 25 VYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLF------------RMQETN 72
V A D DV N + R+G K F R Q
Sbjct: 86 VVAVDADVFTPAAATAVNEILERRLPGAPHRLGNPAKVGTRFVRTKTADGSEPVRRQGRR 145
Query: 73 LKKQKSEEKIQGH--LEFLAYGQQFVAYNIHPKTQRAYTWS--IAPHALKVEELPLLTPD 128
+ + + H +E L GQQ V + HP AY W + + ELPL+ D
Sbjct: 146 FIFDGAPDTKENHNRVELLGQGQQSVVHGTHP-CGVAYAWPSGTSIVEMHPSELPLIPID 204
Query: 129 EVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDE 188
E+ DT +S S + R ++ A + E +G D
Sbjct: 205 ELNAIIAECDTAME----AAGGVLVSGATFSRSGRNGGGADLTALVEANAEALLSGLADT 260
>gi|257455559|ref|ZP_05620789.1| bifunctional DNA primase/polymerase domain protein [Enhydrobacter
aerosaccus SK60]
gi|257447025|gb|EEV22038.1| bifunctional DNA primase/polymerase domain protein [Enhydrobacter
aerosaccus SK60]
Length = 768
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 43/232 (18%), Positives = 73/232 (31%), Gaps = 37/232 (15%)
Query: 8 HYVYNGFGI-LCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRV------GQAP 60
Y I L G G + A D+D + D +S GK S V G
Sbjct: 70 KYPQANIAIFLAGSG---LCAVDIDPRNGG--DYTIEVLESEHGKIDSDVLQLTGGGGEH 124
Query: 61 KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE 120
+ +L K + ++F + G +A + ++Y W ++ L
Sbjct: 125 RVFLL------PSGDVKLPGTLGKGVDFKSNG-YIIAEPSSHISGQSYVWEMSSDPLAGA 177
Query: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
+P PD + F L N+ Y +E F+
Sbjct: 178 -VPSPLPDWIRSF------NINAAHASNETGTLHNGMSD--NQYYDVLEALQFIG----- 223
Query: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+ D W+ V MA+ G ++ +W + +D+ W SF
Sbjct: 224 --SDDRDTWLNVGMALQAS--GDKRAYQMWCDWSQASSKFDQNDQYRVWRSF 271
>gi|332160965|ref|YP_004297542.1| Replication protein [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|325665195|gb|ADZ41839.1| Replication protein [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|330862121|emb|CBX72285.1| hypothetical protein YEW_AK02220 [Yersinia enterocolitica W22703]
Length = 721
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 14/181 (7%)
Query: 4 TDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGK-PISRV-GQAPK 61
G + G G V A D D E++ G P R + K
Sbjct: 78 EKWSREPDYGICMRTGNG---VIALDCDSESEEIQAIIQELTLELFGVIPPRRYRSNSNK 134
Query: 62 TLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEE 121
L L ++ K+ E G +E LA G Q V HP + W +E
Sbjct: 135 CLYLLAVEGEYRKRIHRLEGNNGIIEMLADGNQAVVAGTHP-SGARILWDNGL----PDE 189
Query: 122 LPLLTPDEVE----YFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCF 177
++TP+++E E + + R S+ + + ++ + F
Sbjct: 190 PVVITPEQLESLWSALAERLPVVNSTEAGTSRLRDRSQATPNATDETADFLDANGWTLDF 249
Query: 178 G 178
G
Sbjct: 250 G 250
>gi|325109860|ref|YP_004270928.1| Bifunctional DNA primase/polymerase [Planctomyces brasiliensis DSM
5305]
gi|324970128|gb|ADY60906.1| Bifunctional DNA primase/polymerase [Planctomyces brasiliensis DSM
5305]
Length = 660
Score = 61.8 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 43/220 (19%), Positives = 72/220 (32%), Gaps = 31/220 (14%)
Query: 19 GIGTHPVYAFDVDVLDE---QVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQETNLKK 75
GI T + D+D D DR ++ R G+ + F + +
Sbjct: 69 GIATDGLVVVDIDGADHPWLTDPDRMAELAKNAMAVTP-RGGRH----LYFAQGDEEIGC 123
Query: 76 QKSEEKIQGHLEFLAYGQQFVAYNIHPKT--QRAYTWSIAPHALKVEELPLLTPDEVEYF 133
S K+ ++ A G VA P T + Y WS + EL +
Sbjct: 124 SVS--KLADKVDIRANGGYVVAP---PSTVNGKEYRWSNSFELGGRSELSAVPE------ 172
Query: 134 FEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVV 193
+I+ P + K+ ++ + E LS E + + D+W+ V
Sbjct: 173 -----SISGPLRRPKNDQQQPVQQDGIFSIA-EKAEALTILSRLPLECCD-NRDDWLRVG 225
Query: 194 MAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
MA+H + + W KL + W FD
Sbjct: 226 MALHSVSP---QLLPDWVIWSKLSAKFQPGVCERSWRGFD 262
>gi|17158691|ref|NP_478202.1| hypothetical protein alr7555 [Nostoc sp. PCC 7120]
gi|17134640|dbj|BAB77198.1| alr7555 [Nostoc sp. PCC 7120]
Length = 332
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/206 (18%), Positives = 63/206 (30%), Gaps = 10/206 (4%)
Query: 31 DVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQETNLKKQKSEEKIQGHLEFLA 90
D E + DR R ++ + ++ + + +K +K + HLEF
Sbjct: 116 DTPMESLHDRAQKYLPPTIAFTSGRKYRSQRLYLIPKSKAWEVKSRKIKTGKDEHLEFRG 175
Query: 91 YG-QQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKS 149
+ + HP+ R Y W P E + PD V T + K
Sbjct: 176 KNLASILPPSFHPE-GRNYRWL--PGCSPSERQIEIAPDWVIAQMLAKQEKTRKFNLLKE 232
Query: 150 YRKLSKIWKSHN---NRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEG 206
+ +NI+ L + + WI V MA+ + +
Sbjct: 233 KYNRRYGVDRYAHLIPSIESNIQTALVLLEVIHPRFADDYHSWIQVGMALKSVSPILFKA 292
Query: 207 KEIVREWCKLGRTYDEKSFNAKWDSF 232
W +L Y KW SF
Sbjct: 293 ---WDTWSQLSPKYKPGECAYKWQSF 315
>gi|254480931|ref|ZP_05094177.1| Primase C terminal 2 family protein [marine gamma proteobacterium
HTCC2148]
gi|214038726|gb|EEB79387.1| Primase C terminal 2 family protein [marine gamma proteobacterium
HTCC2148]
Length = 657
Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 71/228 (31%), Gaps = 18/228 (7%)
Query: 8 HYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFR 67
+ I+ G + D D + + K I R + F
Sbjct: 69 KHPKYDVAIVVGP---RIIMLDADTPEAEARLHEIEAAHDLTPKIIVRTSRG--LHHYFG 123
Query: 68 MQETNLKKQKSEEKIQGH--LEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLL 125
+ + + K + ++ A G+ + P T +++ A +E+L ++
Sbjct: 124 LADGVIAKADGLDSKSNPTGIDIRA-GESLAI--VPPSTSKSFELCEAN---SLEDLGVV 177
Query: 126 TPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGS 185
+ V+ + P + + + TN E + +
Sbjct: 178 GQNFVDAIV--RNNGRKPASPPATSTPPASLP--APITTLTNAEEARIQNLLSHLEPDLC 233
Query: 186 HDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTY-DEKSFNAKWDSF 232
+ +W V MA+H+ T G G ++ +W G+ Y W F
Sbjct: 234 YQDWSHVGMAVHHATGGGQIGLDLFDQWSSGGKKYIGRHDIQNAWKYF 281
>gi|254431281|ref|ZP_05044984.1| Primase C terminal 2 family [Cyanobium sp. PCC 7001]
gi|197625734|gb|EDY38293.1| Primase C terminal 2 family [Cyanobium sp. PCC 7001]
Length = 901
Score = 59.5 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 46/157 (29%), Gaps = 26/157 (16%)
Query: 78 SEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWS--IAPHALKVEELPLLTPDEVEYFFE 135
S + + E Q V HP+T R Y W P + + P ++ E
Sbjct: 141 SNDDGETLWELRWDRHQAVIIGTHPETGR-YRWRPGGDPKDVGLAVAP-------DWLLE 192
Query: 136 FFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMA 195
P + + L+ + S+ +W+ MA
Sbjct: 193 PLAVQELPDTEPITPTA------------EDTERAVQMLAHIDPAAHT-SYGDWLRAGMA 239
Query: 196 IHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+H + + EW + +DE KW S
Sbjct: 240 LHDTDP---DLLSVWVEWSRQMPNFDEAECLEKWSSL 273
>gi|85059138|ref|YP_454840.1| hypothetical protein SG1160 [Sodalis glossinidius str. 'morsitans']
gi|84779658|dbj|BAE74435.1| hypothetical protein [Sodalis glossinidius str. 'morsitans']
Length = 214
Score = 58.3 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 1 MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCG-KPISRVGQ- 58
+ +D++ +GI C + A D D DE + G P R +
Sbjct: 78 ITPAMLDNWEEPDYGI-CVRTGRGLIALDCDNEDEGHHAIIEQVLRDTLGCLPPCRFRKN 136
Query: 59 APKTLMLFRM---QETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTW 110
A K L L + + + E+ +E LA GQQF+A IHP + W
Sbjct: 137 ANKCLYLLNAPFERRKGVLRLPDEDGRPAQIELLATGQQFMAAGIHP-SGARIVW 190
>gi|160898867|ref|YP_001564449.1| P4 family phage/plasmid primase [Delftia acidovorans SPH-1]
gi|160364451|gb|ABX36064.1| phage/plasmid primase, P4 family [Delftia acidovorans SPH-1]
Length = 857
Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 185 SHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYD-EKSFNAKWDSF 232
S EW+ +MA+H+E GS + ++ EW G +Y K +WDSF
Sbjct: 248 SRAEWLNALMALHHEFDGSEDALDLADEWSATGDSYAGRKDVEGRWDSF 296
>gi|37626216|gb|AAQ96591.1| putative integrase [Vibrio phage VP16C]
Length = 791
Score = 56.4 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/182 (13%), Positives = 47/182 (25%), Gaps = 34/182 (18%)
Query: 64 MLFRMQETNLK-----KQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALK 118
FR +K K L+ + G+ ++A T Y
Sbjct: 99 YAFRAPNWPVKNISNAKHNETGVQFEGLDVRSAGKGYIA------TGEPYYTPTHLGG-- 150
Query: 119 VEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFG 178
F + P + + +S T+ + +
Sbjct: 151 -------------ALAMAFPQMLPPLPEGLRPWLEAVAHESSERVEVTDEDAKTIREALR 197
Query: 179 EEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLG--------RTYDEKSFNAKWD 230
+ +EW+ V +++ +G + EW Y + +WD
Sbjct: 198 HIDPGETREEWVKVGLSLKSGFGDDPQGLSLFDEWSSGALWRDGDEPANYVPEHIETQWD 257
Query: 231 SF 232
SF
Sbjct: 258 SF 259
>gi|37626154|gb|AAQ96530.1| putative integrase [Vibrio phage VP16T]
Length = 791
Score = 56.0 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/182 (14%), Positives = 48/182 (26%), Gaps = 34/182 (18%)
Query: 64 MLFRMQETNLKKQKSEEKIQ-----GHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALK 118
FR + +K + + Q L+ + G+ ++A T Y A
Sbjct: 99 YAFRAPDWPVKNISNAKHNQTGEKFEGLDVRSAGKGYIA------TGEPYYRPTAKGG-- 150
Query: 119 VEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFG 178
F + P + + S T+ E +
Sbjct: 151 -------------AVAMAFPQMLPPLPEGLRPWLEAVEHDSAERVEITDQEAQTVREALS 197
Query: 179 EEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLG--------RTYDEKSFNAKWD 230
+EW+ V +A+ +G + EW Y + +W
Sbjct: 198 YIDPGDKREEWVKVGLALKSGFGDDPQGLSLFDEWSSGALWQDGDMPANYVPEHIETQWH 257
Query: 231 SF 232
SF
Sbjct: 258 SF 259
>gi|254453953|ref|ZP_05067390.1| Bifunctional DNA primase/polymerase, N-terminal domain family
[Octadecabacter antarcticus 238]
gi|198268359|gb|EDY92629.1| Bifunctional DNA primase/polymerase, N-terminal domain family
[Octadecabacter antarcticus 238]
Length = 516
Score = 55.2 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/227 (9%), Positives = 59/227 (25%), Gaps = 22/227 (9%)
Query: 7 DHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLF 66
G+ C + D D + + ++ + +
Sbjct: 68 TETPTANIGLAC--AASGIVVVDPDTYKPTFAWD-QFRVEKGIDVIKTLTQRSARGGWHY 124
Query: 67 RMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLT 126
+ ++ +E + ++ + Y W
Sbjct: 125 ----IFAAQADTKYPGSLAVEVDVKHKGYIMLAPSKFEGKVYAWHND------------- 167
Query: 127 PDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSH 186
D++ ++ R+ ++ ++ + + + R + +
Sbjct: 168 -DDIADAPDWIKAKAPVRNVATIAPQVDELTIADVSGPMFVEQARIDKALDAIPAAELDY 226
Query: 187 DEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEK-SFNAKWDSF 232
+W+ V M + +ET G G + +W + Y +W F
Sbjct: 227 GDWVKVGMGLCHETMGEESGLALWDQWSRQDPRYKGGDDLAKRWAKF 273
>gi|254504973|ref|ZP_05117124.1| hypothetical protein SADFL11_5012 [Labrenzia alexandrii DFL-11]
gi|222441044|gb|EEE47723.1| hypothetical protein SADFL11_5012 [Labrenzia alexandrii DFL-11]
Length = 1485
Score = 54.8 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 9/168 (5%)
Query: 9 YVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRM 68
Y +N G+L G + DVD +VD + +S G +++VG K + +F
Sbjct: 79 YPHN-IGVLLNDG---LVCVDVDTDHPGIVDAVEDWARSLGGDYVAKVGG--KGVSVFVR 132
Query: 69 QETNLKKQKSEEKIQGHL-EFLAYGQQFVAYNIHPKTQRAYTW--SIAPHALKVEELPLL 125
E + + HL + LA G+Q + + + Y W +A +++LP L
Sbjct: 133 LEDPDLHLPGKLHVGDHLIDILASGRQTIVPPSMHTSGKRYRWVGDVALEDSSLDDLPSL 192
Query: 126 TPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAF 173
+ + K + K ++ ++ +F
Sbjct: 193 NETAWQALLDALGVHGDLAGKGSALGSGQSYEKDGFSKYLEDLATESF 240
>gi|78067109|ref|YP_369878.1| virulence-associated E family protein [Burkholderia sp. 383]
gi|77967854|gb|ABB09234.1| Virulence-associated E family protein [Burkholderia sp. 383]
Length = 761
Score = 54.1 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 10/118 (8%)
Query: 113 APHALKVEELPLLTPDEVEYFFEFFD-TITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIR 171
+ +++++P + + D + P + + +
Sbjct: 205 PLDSFELDDMP-------KAYVTEMDWPSSAPVPRAEREIVVPPPAVVAPAEFGALKSAL 257
Query: 172 AFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKW 229
+ GE + +D W V+ +H+ ++GS EG +V E+ YD W
Sbjct: 258 DAIPNGGENELD--YDSWRNVLFGVHHASQGSDEGLALVHEFSARSSKYDPAKTERDW 313
>gi|134296560|ref|YP_001120295.1| TOPRIM domain-containing protein [Burkholderia vietnamiensis G4]
gi|134139717|gb|ABO55460.1| TOPRIM domain protein [Burkholderia vietnamiensis G4]
Length = 797
Score = 54.1 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 166 TNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSF 225
IRA LS G D W+ + MAI E G ++ +W + +Y E
Sbjct: 6 DEERIRAALSHVPA----GDRDTWVQMGMAIKAEL--GEAGFDLWDDWSRSASSYSEADA 59
Query: 226 NAKWDSF 232
+ W SF
Sbjct: 60 KSVWKSF 66
>gi|115352457|ref|YP_774296.1| TOPRIM domain-containing protein [Burkholderia ambifaria AMMD]
gi|115282445|gb|ABI87962.1| TOPRIM domain protein [Burkholderia ambifaria AMMD]
Length = 797
Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 166 TNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSF 225
+RA LS + D W+ + MAI E G + +W + Y E
Sbjct: 6 EQERMRAALSHVPAD----DRDTWVQMGMAIKAEF--GEAGFDFWDDWSRSASNYSEADA 59
Query: 226 NAKWDSF 232
+ W SF
Sbjct: 60 KSVWKSF 66
>gi|284504180|ref|YP_003406895.1| D5 family helicase-primase [Marseillevirus]
gi|282935618|gb|ADB03933.1| D5 family helicase-primase [Marseillevirus]
Length = 903
Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 4/118 (3%)
Query: 119 VEELP-LLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIR--AFLS 175
++LP +L+ I K ++ +++ K+ + E+R L
Sbjct: 246 PKDLPYILSIQRRREPTPIVRGIIPSEKKMTRRKRPARLTKTVDQIMADIAEVRNSRVLD 305
Query: 176 CFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
++D+W+ V + G E E+ ++ +DEK WD+ +
Sbjct: 306 MLDSSRAE-NYDDWMNVGWTLFNIGNGLPEALELWIDFSSRASNFDEKKCEYLWDTME 362
>gi|157311092|ref|YP_001469087.1| gp088 [Lactococcus phage KSY1]
gi|108861432|gb|ABG21631.1| gp088 [Lactococcus phage KSY1]
Length = 445
Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 6/101 (5%)
Query: 132 YFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIP 191
Y + ++ R + + ++ K K + + +++ L + + +W+
Sbjct: 33 YITDEKQGLSPYRVSDFAKIRVKKEIKQSSENKRVGMDLIPLLEVIDPN--DLEYHDWVK 90
Query: 192 VVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
V MA+ E E W + Y KWDSF
Sbjct: 91 VGMALKQE----GYQFETWDTWSQRDVRYKSSEMQDKWDSF 127
>gi|291569389|dbj|BAI91661.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 908
Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 34/210 (16%)
Query: 4 TDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPIS---RVGQAP 60
++ G+G+ G + + A D D + + +S G P + G+
Sbjct: 53 DEISKGRAKGYGLRTGKVSGGIVAIDAD------GHKAHELAESLGGLPPTVSFTSGKEG 106
Query: 61 KTLMLFRMQETNLKKQKSEEKIQGH---------LEFLAYG-QQFVAYNIHPKTQRAYTW 110
+ L+ + +T K +++ GH LE G Q + + HP+T Y W
Sbjct: 107 RAQYLYLIPDTYWDKITTKKLPTGHKSSDGKEELLELRWDGCQSVLPPSKHPETGE-YKW 165
Query: 111 SIAPHALK------------VEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWK 158
+P+ + ++E P P V + T D++ S+ +
Sbjct: 166 LKSPNEIDIAQAPLWVINKMLKETPQPMPLVVLPESIPLEACLTKDDRQLLKTGASQGSR 225
Query: 159 SHNNRRYT--NIEIRAFLSCFGEEFYNGSH 186
+ + + I +L GE + H
Sbjct: 226 NDSAAKLARNLIGTHNWLHSNGERCQDDPH 255
>gi|260654750|ref|ZP_05860238.1| ATPase, RecA family [Jonquetella anthropi E3_33 E1]
gi|260630465|gb|EEX48659.1| ATPase, RecA family [Jonquetella anthropi E3_33 E1]
Length = 691
Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
S+++WI V MA+ +E G ++ W + Y E KW F+
Sbjct: 14 DSYEDWIAVGMALKHEGLG----LDVWDAWSRDSSKYREGECAGKWAGFN 59
>gi|284050056|ref|ZP_06380266.1| hypothetical protein AplaP_01145 [Arthrospira platensis str.
Paraca]
Length = 706
Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 20/134 (14%)
Query: 4 TDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPIS---RVGQAP 60
++ G+G+ G + + A D D + + +S G P + G+
Sbjct: 53 DEISKGRAKGYGLRTGKVSGGIVAIDAD------GHKAHELAESLGGLPPTVSFTSGKEG 106
Query: 61 KTLMLFRMQETNLKKQKSEEKIQGH---------LEFLAYG-QQFVAYNIHPKTQRAYTW 110
+ L+ + +T K +++ GH LE G Q + + HP+T Y W
Sbjct: 107 RAQYLYLIPDTYWDKITTKKLPTGHKSSDGKEELLELRWDGCQSVLPPSKHPETGE-YKW 165
Query: 111 SIAPHALKVEELPL 124
+P+ + + + PL
Sbjct: 166 LKSPNEIDIAQAPL 179
>gi|291336073|gb|ADD95660.1| hypothetical protein [uncultured phage MedDCM-OCT-S11-C349]
Length = 633
Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 33/181 (18%), Positives = 54/181 (29%), Gaps = 33/181 (18%)
Query: 65 LFRMQETNLKKQKSEEKIQ---GHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEE 121
+FR+ E K + G E L +G+Q V Y +P +
Sbjct: 1 MFRVPEELWADVKGHGLRKEDGGDYEIL-WGRQGVVYGAYPGGK---------------- 43
Query: 122 LPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHN---NRRYTNIEIRAFLSCFG 178
+ P + + D T P R+ + R + + C
Sbjct: 44 --VSKPGQYRLQGDLTDIPTAPDWLLAEMRQPPRSINKKELDFTDRTQDEIAQIIFECLT 101
Query: 179 E--EFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFN-----AKWDS 231
+ G+ D W+ + MAIH + G + W Y + N W S
Sbjct: 102 VISQQGKGTRDHWVKIGMAIHSALP-TDMGLHLWASWSCEDPDYASEWENSNPCEEVWYS 160
Query: 232 F 232
F
Sbjct: 161 F 161
>gi|307592387|ref|YP_003899978.1| primase 2 [Cyanothece sp. PCC 7822]
gi|306986032|gb|ADN17912.1| Primase 2 [Cyanothece sp. PCC 7822]
Length = 1087
Score = 51.0 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 21/167 (12%)
Query: 80 EKIQGHLEFLA-YGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTPDEV-------- 130
E++ ++ L+ G+ Y + + Y H K L + ++
Sbjct: 246 ERLHKKVDLLSVIGEYIPLY----ERGKNYVGHCPVHESKAPNLMVYPDKKMFTCHDCGI 301
Query: 131 -EYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTN--IEIRAFLSCFG--EEFYNGS 185
F F + + KE + + + NN + N + LS F
Sbjct: 302 GGNIFNFLQLLGKSQLKETITPQSTPQKRLTNNNGHHNFWSNVDWALSYLNALSPFRADD 361
Query: 186 HDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+D+W+ V MA+H + W + Y KW SF
Sbjct: 362 YDDWLTVGMALHSVDDSL---LKEWDNWSRSSSKYKPGECEKKWKSF 405
>gi|291621990|emb|CAX65023.1| gp42 protein [Vibrio phage VP58.5]
Length = 1117
Score = 51.0 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 157 WKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKL 216
N Y ++ C + +D W V A+H E +G + W
Sbjct: 22 MHGRNPLTYQEVQ-----ECLSFISPDQDYDTWARVGRALHSEF--GKDGFTLFDNWSSG 74
Query: 217 GRTYDEKSFNAKWDSF 232
G Y EK+ +W SF
Sbjct: 75 GSNYKEKAVREQWKSF 90
>gi|158522714|ref|YP_001530584.1| bifunctional DNA primase/polymerase [Desulfococcus oleovorans Hxd3]
gi|158511540|gb|ABW68507.1| Bifunctional DNA primase/polymerase [Desulfococcus oleovorans Hxd3]
Length = 746
Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/185 (14%), Positives = 62/185 (33%), Gaps = 9/185 (4%)
Query: 7 DHYVYNGFGILCGIGTHPVYAFDVDVLD-EQVVDRFNNEFQSCCGKPISRVGQAPKTLML 65
+ GI G A D+D+ D + + + + + G L
Sbjct: 71 SRWPDANIGIRTGK--ESFIAIDIDLPDGPDNMKKLEKTYGNLPKTVNQKTGGGGYQLFF 128
Query: 66 FRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLL 125
+ + + + G+++ G VA + Y W +P ++++ +P
Sbjct: 129 ----KPPHTRIPCKTGLLGNIDIRGEGGYVVAPPSDHIKNKKYKWRHSPDSIEIAGMPEW 184
Query: 126 TPDEVEYFFEFFDTITTPRDKEKSYR--KLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYN 183
D +E ++ D + + + + R L++I S EI L +
Sbjct: 185 LTDLIEKGEKYCDLVHSLKKIPEGKRNDTLAEIAGSLRGEGRELDEIHGVLRKANKNRCT 244
Query: 184 GSHDE 188
+ ++
Sbjct: 245 PALED 249
>gi|240142756|ref|YP_002967269.1| hypothetical protein MexAM1_META2p1160 [Methylobacterium extorquens
AM1]
gi|240012703|gb|ACS43928.1| Hypothetical protein MexAM1_META2p1160 [Methylobacterium extorquens
AM1]
Length = 1370
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 45/142 (31%), Gaps = 12/142 (8%)
Query: 25 VYAFDVDVLDEQVVDRFNNEFQSCCGKPISR--VGQAPKTLMLFRMQETNLKKQ------ 76
V+ DVDV + + D + G P R K +++ N
Sbjct: 135 VFVVDVDVQNVAITDAIIRLARRMLGVPFIREYTQSRGKASLIYSTDPANDPVALKRSYP 194
Query: 77 ---KSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWS-IAPHALKVEELPLLTPDEVEY 132
+ + +E L+ F H KT ++ + + P + +T ++
Sbjct: 195 VLSRDGKPTSQAVEILSNNAAFTILGRHWKTGSSFQYRGLHPLRDRPTAAASVTQTQLRA 254
Query: 133 FFEFFDTITTPRDKEKSYRKLS 154
F E K +SY+
Sbjct: 255 FLERVSEEIVLLGKLQSYQGRE 276
>gi|148256277|ref|YP_001240862.1| hypothetical protein BBta_4941 [Bradyrhizobium sp. BTAi1]
gi|146408450|gb|ABQ36956.1| hypothetical protein BBta_4941 [Bradyrhizobium sp. BTAi1]
Length = 736
Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 6/112 (5%)
Query: 119 VEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFG 178
V+ P+ T F + E + + N E+ L
Sbjct: 167 VDGTPVRTEIVDGDFADIVLADACSSPAEVGSPQRERGRPLKNTAPADRAEVERAL---- 222
Query: 179 EEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWD 230
E + + W+ + A+H E EG ++ W YD + KW+
Sbjct: 223 EVIASDDYQVWLRIGAALHDEF--GDEGFDLFDRWSAKSDKYDNREVERKWE 272
>gi|153853410|ref|ZP_01994819.1| hypothetical protein DORLON_00808 [Dorea longicatena DSM 13814]
gi|149754196|gb|EDM64127.1| hypothetical protein DORLON_00808 [Dorea longicatena DSM 13814]
Length = 750
Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 182 YNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+ +W+ V MA+ +E ++ W K R Y KW++F
Sbjct: 17 AELDYQDWVNVGMALKHE----GYSVDVWDTWSKNDRRYHSGECEKKWNTF 63
>gi|33603114|ref|NP_890674.1| hypothetical protein BB4140 [Bordetella bronchiseptica RB50]
gi|33568745|emb|CAE34503.1| phage-related hypothetical protein [Bordetella bronchiseptica RB50]
Length = 700
Score = 49.1 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 13/113 (11%)
Query: 125 LTPDEVE-----YFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGE 179
+T + + + PR + + + + T E+R+ L
Sbjct: 184 VTEQRIRDGGLICLAAYIEETLAPRHGARRATN-AGMTEVVPVNAKTVTELRSALLYMRA 242
Query: 180 EFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
E Y+ W+ + +A+ G G+ + EW +D K KW+SF
Sbjct: 243 EDYHL----WVNMGLALR--ELG-ETGRGLWMEWSATSEKFDSKDAAKKWNSF 288
>gi|48697236|ref|YP_024966.1| putative primase/helicase protein [Burkholderia phage BcepC6B]
gi|47779042|gb|AAT38405.1| putative primase/helicase protein [Burkholderia phage BcepC6B]
Length = 888
Score = 49.1 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 41/117 (35%), Gaps = 10/117 (8%)
Query: 113 APHALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRA 172
+ +++++P E+++ + + + + I++
Sbjct: 214 PLDSFELDDMPKTFAAEMDWPSSAAVPLVAREEI---------VMPGTADVPVELELIKS 264
Query: 173 FLSCFGEEFYN-GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAK 228
L + ++ W VV IH+ RGS +G + E+ Y+ + + +
Sbjct: 265 ALDMIPNAGVDELDYEAWRDVVFGIHHAARGSDDGLALAHEFSARSSKYNPRFLDER 321
>gi|255067391|ref|ZP_05319246.1| inner membrane protein [Neisseria sicca ATCC 29256]
gi|255048361|gb|EET43825.1| inner membrane protein [Neisseria sicca ATCC 29256]
Length = 1008
Score = 48.7 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 169 EIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAK 228
EIRA LS G + D WI + A+ E +G + EW + Y+ + A
Sbjct: 11 EIRAALSHIGAD----DRDMWIRMGAAVKDEM--GEDGFHLWDEWSQTSGNYNARDAKAA 64
Query: 229 WDSF 232
W SF
Sbjct: 65 WKSF 68
>gi|254454539|ref|ZP_05067976.1| Bifunctional DNA primase/polymerase, N-terminal domain family
[Octadecabacter antarcticus 238]
gi|198268945|gb|EDY93215.1| Bifunctional DNA primase/polymerase, N-terminal domain family
[Octadecabacter antarcticus 238]
Length = 219
Score = 48.7 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 37/211 (17%), Positives = 70/211 (33%), Gaps = 22/211 (10%)
Query: 7 DHYVYNGFGILCGIGTHPVYAFDVDVLD-EQVVDRFNNEFQSCCGKPISRVGQAPKTLML 65
D + G+ G + V D+D D + ++ V +
Sbjct: 26 DKHPDALPGLPTGAASG-VAVLDIDRKDDKDGFTALSDAGLDRFTDGRYVVDTPSGGQHI 84
Query: 66 FRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLL 125
+ L+ S KI ++ LA G +A TQ Y S + V+ P
Sbjct: 85 YFAHIDGLRCSTS--KIAEGVDVLADGGYVIAPGAE-TTQGTYPTSSNSEDMTVKPFP-- 139
Query: 126 TPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGS 185
T R + +K S + + ++ + + S
Sbjct: 140 ---------------KTLRKLVGQRKATTKPKSSEPAQAWKIVKAALKSIPNNGKGADVS 184
Query: 186 HDEWIPVVMAIHYETRGSAEGKEIVREWCKL 216
D W+ ++ A+H+E+ GSA+G+++ W
Sbjct: 185 RDWWVKMLAALHHESSGSAKGRKLAHTWSGT 215
>gi|15789518|ref|NP_279342.1| hypothetical protein VNG0215C [Halobacterium sp. NRC-1]
gi|10579860|gb|AAG18822.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
Length = 857
Score = 48.3 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 127 PDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSH 186
D ++ FE + I S K + +I LS + +
Sbjct: 183 ADPTQFLFEAYQEINGEAPSLSSST--GKSGDYDGDEWLDKSDIEDALSHVN---PDCGY 237
Query: 187 DEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYD---EKSFNAKWDS 231
DEW+ + A+H GS GK + +W K G +D E++ WDS
Sbjct: 238 DEWLKLGFAVHDWDSGST-GKRLFEQWSKGGSKWDNQAERNIQDIWDS 284
>gi|167582916|ref|ZP_02375790.1| inner membrane protein [Burkholderia thailandensis TXDOH]
Length = 952
Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W V MA+ E EG + EW + + Y+ K W SF
Sbjct: 17 DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDTRDVWKSF 63
>gi|315501675|ref|YP_004080562.1| bifunctional DNA primase/polymerase [Micromonospora sp. L5]
gi|315408294|gb|ADU06411.1| Bifunctional DNA primase/polymerase [Micromonospora sp. L5]
Length = 719
Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 41/226 (18%), Positives = 70/226 (30%), Gaps = 26/226 (11%)
Query: 10 VYNGFGILCG----IGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKT--- 62
NG + G H + DVD D++ Q G + +
Sbjct: 63 PKNGVKLRAGNIALRLGHGLIGVDVDAYDDKPGAETFKVLQERLGDLPPTWRSSSRDDGI 122
Query: 63 --LMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFV--AYNIHPKTQRAYTW------SI 112
+ LFR + + + E G +EF+ YG ++V A ++HP + R Y W ++
Sbjct: 123 SGIYLFRCRPGRRRGSPAPEDGGG-IEFVQYGHRYVICAPSLHP-SGRQYVWFSPDGEAL 180
Query: 113 APHALKVEELPLLTPDEVEYFFEF------FDTITTPRDKEKSYRKLSKIWKSHNNRRYT 166
A EELP L P+ + + D P + + R
Sbjct: 181 EDEAPDPEELPWL-PEAWDRYLMRDDPVVGEDAPELPDAEVAGWIAEDSAEPCAQMARLI 239
Query: 167 NIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVRE 212
++ + D + RG I R+
Sbjct: 240 TKTAGELALRGSSGAHDITRDGLWQAIRDSAQGHRGLETAVAIFRK 285
>gi|302385773|ref|YP_003821595.1| Primase 2 [Clostridium saccharolyticum WM1]
gi|302196401|gb|ADL03972.1| Primase 2 [Clostridium saccharolyticum WM1]
Length = 735
Score = 47.5 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 183 NGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
S+ +WI V MA+ +E ++ W R Y KW F
Sbjct: 18 ELSYQDWINVGMALQHE----GYSVDVWDRWSMNDRRYHAGECEKKWRGF 63
>gi|134294538|ref|YP_001118273.1| inner membrane protein [Burkholderia vietnamiensis G4]
gi|134137695|gb|ABO53438.1| inner membrane protein [Burkholderia vietnamiensis G4]
Length = 958
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W V MA+ E EG + EW + + Y+ K W SF
Sbjct: 22 DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSF 68
>gi|171317656|ref|ZP_02906841.1| Primase 2 [Burkholderia ambifaria MEX-5]
gi|171097184|gb|EDT42034.1| Primase 2 [Burkholderia ambifaria MEX-5]
Length = 953
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W V MA+ E EG + EW + + Y+ K W SF
Sbjct: 17 DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSF 63
>gi|330818031|ref|YP_004361736.1| primase 2 [Burkholderia gladioli BSR3]
gi|327370424|gb|AEA61780.1| primase 2 [Burkholderia gladioli BSR3]
Length = 953
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W V MA+ E EG + EW + + Y+ K W SF
Sbjct: 17 DDRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSF 63
>gi|167618366|ref|ZP_02386997.1| inner membrane protein [Burkholderia thailandensis Bt4]
Length = 958
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W V MA+ E EG + EW + + Y+ K W SF
Sbjct: 22 DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSF 68
>gi|167567620|ref|ZP_02360536.1| inner membrane protein [Burkholderia oklahomensis EO147]
gi|167569133|ref|ZP_02362007.1| inner membrane protein [Burkholderia oklahomensis C6786]
Length = 953
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W V MA+ E EG + EW + + Y+ K W SF
Sbjct: 17 DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSF 63
>gi|254181452|ref|ZP_04888049.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
gi|184211990|gb|EDU09033.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
Length = 953
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W V MA+ E EG + EW + + Y+ K W SF
Sbjct: 17 DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSF 63
>gi|238028381|ref|YP_002912612.1| inner membrane protein [Burkholderia glumae BGR1]
gi|237877575|gb|ACR29908.1| Inner membrane protein [Burkholderia glumae BGR1]
Length = 958
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W V MA+ E EG + EW + + Y+ K W SF
Sbjct: 22 DDRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSF 68
>gi|170733820|ref|YP_001765767.1| primase 2 [Burkholderia cenocepacia MC0-3]
gi|169817062|gb|ACA91645.1| Primase 2 [Burkholderia cenocepacia MC0-3]
Length = 953
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W V MA+ E EG + EW + + Y+ K W SF
Sbjct: 17 DDRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSF 63
>gi|76809069|ref|YP_332699.1| inner membrane protein [Burkholderia pseudomallei 1710b]
gi|237811419|ref|YP_002895870.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346]
gi|254260840|ref|ZP_04951894.1| DNA primase TraC [Burkholderia pseudomallei 1710a]
gi|76578522|gb|ABA47997.1| inner membrane protein [Burkholderia pseudomallei 1710b]
gi|237505486|gb|ACQ97804.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346]
gi|254219529|gb|EET08913.1| DNA primase TraC [Burkholderia pseudomallei 1710a]
Length = 953
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W V MA+ E EG + EW + + Y+ K W SF
Sbjct: 17 DDRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSF 63
>gi|254253429|ref|ZP_04946747.1| Superfamily II helicase [Burkholderia dolosa AUO158]
gi|124896038|gb|EAY69918.1| Superfamily II helicase [Burkholderia dolosa AUO158]
Length = 958
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W V MA+ E EG + EW + + Y+ K W SF
Sbjct: 22 DDRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSF 68
>gi|107023303|ref|YP_621630.1| inner membrane protein [Burkholderia cenocepacia AU 1054]
gi|116690386|ref|YP_836009.1| inner membrane protein [Burkholderia cenocepacia HI2424]
gi|105893492|gb|ABF76657.1| inner membrane protein [Burkholderia cenocepacia AU 1054]
gi|116648475|gb|ABK09116.1| inner membrane protein [Burkholderia cenocepacia HI2424]
Length = 958
Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W V MA+ E EG + EW + + Y+ K W SF
Sbjct: 22 DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNVKDARDVWKSF 68
>gi|254190716|ref|ZP_04897223.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
52237]
gi|157938391|gb|EDO94061.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
52237]
Length = 922
Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W V MA+ E EG + EW + + Y+ K W SF
Sbjct: 17 DDRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSF 63
>gi|327409707|ref|YP_004347127.1| putative primase [Lausannevirus]
gi|326784881|gb|AEA07015.1| putative primase [Lausannevirus]
Length = 902
Score = 46.4 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 41/117 (35%), Gaps = 2/117 (1%)
Query: 119 VEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFG 178
++P+L + P +K+ + +K + +I++ G
Sbjct: 246 PRDIPILLSIQRRREPTPISRGIIPSEKKMAKKKRPTRLVKTMEQIMEDIKMVTDSGILG 305
Query: 179 --EEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
+ ++D+W+ V + G E ++ ++ +DEK W+ +
Sbjct: 306 MLNDSRAENYDDWMNVGWTLFNIGNGLPEALDLWIDFSSRASNFDEKKCEYVWEQME 362
>gi|153835208|ref|ZP_01987875.1| primase C 2 (PriCT-2) family [Vibrio harveyi HY01]
gi|148868318|gb|EDL67446.1| primase C 2 (PriCT-2) family [Vibrio harveyi HY01]
Length = 1209
Score = 46.4 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 165 YTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKS 224
Y E + +S + + W + A+ E + ++I W G +YD++
Sbjct: 11 YEAEEALSHIS------PDLPYKRWSKIGRALVSEY--GNDARDIFERWSATGNSYDKRG 62
Query: 225 FNAKWDSF 232
F + W +F
Sbjct: 63 FKSWWKNF 70
>gi|330445050|ref|ZP_08308703.1| primase C terminal 2 family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489241|dbj|GAA03200.1| primase C terminal 2 family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 1216
Score = 46.4 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 185 SHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+++W + +++ E + +++ W +YD+K F + W SF
Sbjct: 25 PYNDWAKLGRSLYSEY--GDDARDMFELWSAQSSSYDKKEFQSHWRSF 70
>gi|167825274|ref|ZP_02456745.1| hypothetical protein Bpseu9_16513 [Burkholderia pseudomallei 9]
gi|226197848|ref|ZP_03793422.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei Pakistan 9]
gi|225930036|gb|EEH26049.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei Pakistan 9]
Length = 949
Score = 46.4 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W V MA+ E EG + EW + ++Y+ K W SF
Sbjct: 17 DDRDTWRQVGMAVKAEF--GEEGFSLWSEWSQGAQSYNAKDARDVWKSF 63
>gi|237813308|ref|YP_002897759.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346]
gi|237503709|gb|ACQ96027.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346]
Length = 949
Score = 46.4 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W V MA+ E EG + EW + ++Y+ K W SF
Sbjct: 17 DDRDTWRQVGMAVKAEF--GEEGFSLWSEWSQGAQSYNAKDARDVWKSF 63
>gi|283769256|ref|ZP_06342160.1| primase C-terminal 2 (PriCT-2) [Bulleidia extructa W1219]
gi|283104232|gb|EFC05611.1| primase C-terminal 2 (PriCT-2) [Bulleidia extructa W1219]
Length = 764
Score = 46.4 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 183 NGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRT-YDEKSFNAKWDSF 232
N ++ EW+ V MA+ YE ++ W Y KW+SF
Sbjct: 19 NLNYQEWVNVGMALKYE----GAYVDVWDRWSSQDTERYHAGECEKKWNSF 65
>gi|187921139|ref|YP_001890171.1| Primase 2 [Burkholderia phytofirmans PsJN]
gi|187719577|gb|ACD20800.1| Primase 2 [Burkholderia phytofirmans PsJN]
Length = 621
Score = 46.4 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 162 NRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYD 221
+ +RA L+ E + W+ + A+ + G EI EW + YD
Sbjct: 4 PQTDETARVRAALALIPAE----DYGTWVDMAFALKHGL--GDAGFEIWDEWSRTAGNYD 57
Query: 222 EKSFNAKWDS 231
E++ W S
Sbjct: 58 ERAARTTWCS 67
>gi|296161904|ref|ZP_06844705.1| Primase 2 [Burkholderia sp. Ch1-1]
gi|295887923|gb|EFG67740.1| Primase 2 [Burkholderia sp. Ch1-1]
Length = 636
Score = 46.0 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 165 YTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKS 224
RA L+ E + W+ + AI + G +I EW + Y E++
Sbjct: 7 SEEERARAALAMVPAE----DYATWVDMAFAIKHGF--GEAGFDIWDEWSRTAHNYSERA 60
Query: 225 FNAKWDS 231
W S
Sbjct: 61 ARVTWRS 67
>gi|313668169|ref|YP_004048453.1| hypothetical protein NLA_8370 [Neisseria lactamica ST-640]
gi|313005631|emb|CBN87071.1| hypothetical protein NLA_8370 [Neisseria lactamica 020-06]
Length = 162
Score = 45.6 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 169 EIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAK 228
EIRA LS G + D WI + A+ E +G + EW + G +Y+ + A
Sbjct: 6 EIRAALSHIGAD----DRDMWIRMGEAVKDEI--GEDGFHLWDEWSQTGGSYNARDAKAA 59
Query: 229 WDSF 232
W SF
Sbjct: 60 WKSF 63
>gi|167736508|ref|ZP_02409282.1| hypothetical protein Bpse14_00515 [Burkholderia pseudomallei 14]
Length = 953
Score = 45.6 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W MA+ E EG + EW + + Y+ K W SF
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNAKDARDVWKSF 63
>gi|301299425|ref|ZP_07205704.1| primase C-terminal domain protein [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300852961|gb|EFK80566.1| primase C-terminal domain protein [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 752
Score = 45.6 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRT-YDEKSFNAKWDSFD 233
++ EW+ V MA+ YE W + T Y + KW++FD
Sbjct: 20 LNYQEWVNVGMALKYE----GYSVSDWDNWSQRDSTRYHDGETERKWNTFD 66
>gi|206562201|ref|YP_002232964.1| hypothetical protein BCAM0337 [Burkholderia cenocepacia J2315]
gi|198038241|emb|CAR54195.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
Length = 615
Score = 45.2 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 170 IRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKW 229
+RA L+ G + W+ + A+ + G ++ W + YD +S A W
Sbjct: 12 VRAALAAIPA----GDYSTWVDMAFAVKHGL--GEAGFDLWDAWSQTAPNYDARSARATW 65
Query: 230 DS 231
S
Sbjct: 66 RS 67
>gi|257140828|ref|ZP_05589090.1| DNA primase [Burkholderia thailandensis E264]
Length = 950
Score = 45.2 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W MA+ E EG + EW + + Y+ + W SF
Sbjct: 17 DDRDTWRHAGMALKAEF--GEEGFALWNEWSQGAQNYNARDTRDVWKSF 63
>gi|83717727|ref|YP_440202.1| DNA primase [Burkholderia thailandensis E264]
gi|83651552|gb|ABC35616.1| DNA primase [Burkholderia thailandensis E264]
Length = 955
Score = 45.2 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W MA+ E EG + EW + + Y+ + W SF
Sbjct: 22 DDRDTWRHAGMALKAEF--GEEGFALWNEWSQGAQNYNARDTRDVWKSF 68
>gi|91783159|ref|YP_558365.1| putative DNA replication primase protein [Burkholderia xenovorans
LB400]
gi|91687113|gb|ABE30313.1| Putative DNA replication primase protein [Burkholderia xenovorans
LB400]
Length = 620
Score = 44.8 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 170 IRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKW 229
RA L+ + ++ W+ + A+ EG EI W + YDE++ W
Sbjct: 12 ARAALAVIPAD----DYETWVDMAFALKQGF--GDEGFEIWDAWSRTAANYDERAARTTW 65
Query: 230 DS 231
S
Sbjct: 66 RS 67
>gi|160897071|ref|YP_001562653.1| primase 2 [Delftia acidovorans SPH-1]
gi|160362655|gb|ABX34268.1| Primase 2 [Delftia acidovorans SPH-1]
Length = 309
Score = 44.8 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 179 EEFYNGSHDE---WIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+HD+ WI MAI E G ++ EW + +Y+ K+ A W SF
Sbjct: 7 NALQYLNHDDREVWIMAGMAIKAEI--GESGFDLWDEWSRRADSYNPKAARASWRSF 61
>gi|53717722|ref|YP_106708.1| hypothetical protein BPSL0082 [Burkholderia pseudomallei K96243]
gi|52208136|emb|CAH34066.1| hypothetical protein BPSL0082 [Burkholderia pseudomallei K96243]
Length = 955
Score = 44.8 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W MA+ E EG + EW + + Y+ + W SF
Sbjct: 22 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKSF 68
>gi|167822127|ref|ZP_02453598.1| inner membrane protein [Burkholderia pseudomallei 9]
gi|226193316|ref|ZP_03788926.1| DNA primase TraC [Burkholderia pseudomallei Pakistan 9]
gi|225934916|gb|EEH30893.1| DNA primase TraC [Burkholderia pseudomallei Pakistan 9]
Length = 950
Score = 44.8 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W MA+ E EG + EW + + Y+ + W SF
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKSF 63
>gi|167813585|ref|ZP_02445265.1| hypothetical protein Bpse9_00515 [Burkholderia pseudomallei 91]
Length = 950
Score = 44.8 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W MA+ E EG + EW + + Y+ + W SF
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKSF 63
>gi|126440554|ref|YP_001057153.1| hypothetical protein BURPS668_0098 [Burkholderia pseudomallei 668]
gi|126220047|gb|ABN83553.1| conserved hypothetical protein [Burkholderia pseudomallei 668]
Length = 950
Score = 44.8 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W MA+ E EG + EW + + Y+ + W SF
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKSF 63
>gi|76810763|ref|YP_331725.1| inner membrane protein [Burkholderia pseudomallei 1710b]
gi|76580216|gb|ABA49691.1| inner membrane protein [Burkholderia pseudomallei 1710b]
Length = 955
Score = 44.8 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W MA+ E EG + EW + + Y+ + W SF
Sbjct: 22 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKSF 68
>gi|237810289|ref|YP_002894740.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346]
gi|237504566|gb|ACQ96884.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346]
Length = 950
Score = 44.8 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W MA+ E EG + EW + + Y+ + W SF
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKSF 63
>gi|167843732|ref|ZP_02469240.1| hypothetical protein BpseB_00480 [Burkholderia pseudomallei B7210]
Length = 950
Score = 44.8 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W MA+ E EG + EW + + Y+ + W SF
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKSF 63
>gi|254261053|ref|ZP_04952107.1| DNA primase TraC [Burkholderia pseudomallei 1710a]
gi|254219742|gb|EET09126.1| DNA primase TraC [Burkholderia pseudomallei 1710a]
Length = 950
Score = 44.8 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W MA+ E EG + EW + + Y+ + W SF
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKSF 63
>gi|323139963|ref|ZP_08074982.1| hypothetical protein Met49242DRAFT_4370 [Methylocystis sp. ATCC
49242]
gi|322394781|gb|EFX97363.1| hypothetical protein Met49242DRAFT_4370 [Methylocystis sp. ATCC
49242]
Length = 176
Score = 44.8 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 16/123 (13%)
Query: 13 GFGILCGIGTHP---VYAFDVDVLDEQVVDRFNNEFQSCCGKPIS-RVGQAPKTLMLFRM 68
G G+L G + A D+D D + + G P R G+ + +
Sbjct: 58 GIGLLMGSPFPDGTTLGALDID------HDAYTRVGHALLGDPPCCRFGRKGMVVFVRVR 111
Query: 69 QETN---LKKQKSEEKIQGHLE--FLAYGQQFVAYNIHPKTQRAYTW-SIAPHALKVEEL 122
E + + K G + + V IH +T R Y W + + L
Sbjct: 112 GEPRNLEFRVKGDVGKRFGKVAECLFSKKLCVVPPTIHRETGRPYRWVGQSLLDVDFNSL 171
Query: 123 PLL 125
PL+
Sbjct: 172 PLV 174
>gi|126452256|ref|YP_001064398.1| hypothetical protein BURPS1106A_0113 [Burkholderia pseudomallei
1106a]
gi|242316894|ref|ZP_04815910.1| DNA primase TraC [Burkholderia pseudomallei 1106b]
gi|126225898|gb|ABN89438.1| DNA primase TraC [Burkholderia pseudomallei 1106a]
gi|242140133|gb|EES26535.1| DNA primase TraC [Burkholderia pseudomallei 1106b]
Length = 950
Score = 44.8 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W MA+ E EG + EW + + Y+ + W SF
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKSF 63
>gi|291531537|emb|CBK97122.1| RecA-family ATPase [Eubacterium siraeum 70/3]
Length = 739
Score = 44.8 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 183 NGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
+ S+ EW+ V MA+ E + W Y + KW+SF+
Sbjct: 19 DLSYQEWVNVGMALKEE----GYSVTVWDNWSANDNRYHKGECEKKWESFN 65
>gi|167749501|ref|ZP_02421628.1| hypothetical protein EUBSIR_00457 [Eubacterium siraeum DSM 15702]
gi|167657529|gb|EDS01659.1| hypothetical protein EUBSIR_00457 [Eubacterium siraeum DSM 15702]
Length = 739
Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 183 NGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
+ S+ EW+ V MA+ E + W Y + KW+SF+
Sbjct: 19 DLSYQEWVNVGMALKEE----GYSVTVWDNWSANDNRYHKGECEKKWESFN 65
>gi|209551736|ref|YP_002283653.1| hypothetical protein Rleg2_4165 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537492|gb|ACI57427.1| hypothetical protein Rleg2_4165 [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 842
Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 44/137 (32%), Gaps = 7/137 (5%)
Query: 100 IHPKTQRAYTWSIAPHALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKS 159
+HP + +W + ++ ++ + D+ + +
Sbjct: 229 VHP-MRWPGSWHTKTTSARMCKI--VAEDDFAEIDLDVAAEALQAALVDRGLQTPGSPAA 285
Query: 160 HNNRRYTNIEIRAFLSCFGEEFY----NGSHDEWIPVVMAIHYETRGSAEGKEIVREWCK 215
+ + + + ++ + DEW + M + + G G E W +
Sbjct: 286 PSANGFKTEKAWSEIALLDAARIIPNGDLGWDEWNRIGMIFYDASHGDVAGLEAFLSWSE 345
Query: 216 LGRTYDEKSFNAKWDSF 232
+DE + A+WD +
Sbjct: 346 KSAKHDEVAAEARWDHY 362
>gi|212712327|ref|ZP_03320455.1| hypothetical protein PROVALCAL_03415 [Providencia alcalifaciens DSM
30120]
gi|212685073|gb|EEB44601.1| hypothetical protein PROVALCAL_03415 [Providencia alcalifaciens DSM
30120]
Length = 752
Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 153 LSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVV--MAIHYETRGSAEGKEIV 210
LS++ N +T +IR+ L ++ W+ + +A T + K +
Sbjct: 222 LSRLVDLDNINSHTFDDIRSALWHPQVLRLAENYPTWVDMGNRLAWFKNTDYEDKAKSLW 281
Query: 211 REWCKLGRTYDEKSFNAKWDSF 232
EW DE++ KW
Sbjct: 282 VEWSAKAEKGDEEAAINKWSQL 303
>gi|167032204|ref|YP_001667435.1| bifunctional DNA primase/polymerase [Pseudomonas putida GB-1]
gi|166858692|gb|ABY97099.1| Bifunctional DNA primase/polymerase [Pseudomonas putida GB-1]
Length = 920
Score = 44.4 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 67 RMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELP 123
RM KK E G + Q + +IHP T + YTW AP A + +LP
Sbjct: 166 RMAAEPFKKLTVFELRAGLV------QDVLPPSIHPGTGKPYTWRKAPDANGLPDLP 216
>gi|167900117|ref|ZP_02487518.1| hypothetical protein Bpse7_40730 [Burkholderia pseudomallei 7894]
Length = 255
Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W MA+ E EG + EW + + Y+ + W SF
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKSF 63
>gi|167583159|ref|ZP_02376033.1| DNA primase [Burkholderia thailandensis TXDOH]
Length = 950
Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W MA+ E EG I EW + + Y+ + W SF
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFAIWNEWSQGAQNYNARDARDVWKSF 63
>gi|77405307|ref|ZP_00782403.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
gi|77176102|gb|EAO78875.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
Length = 765
Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 185 SHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+ W+ V MA+ +E + + W + Y + AKWDSF
Sbjct: 27 DYQTWVQVGMALKHEGYTAMD----WDVWSQSDSRYKKGECFAKWDSF 70
>gi|291335468|gb|ADD95080.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C348]
Length = 243
Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 168 IEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNA 227
+ A + E +D WI V ++H + EW K Y E +
Sbjct: 3 EAVEAMWAMPPEAA--DDYDIWITVGQSLHSVD---DTLLDPWDEWSKQSSKYKEGECHR 57
Query: 228 KWDSF 232
+W SF
Sbjct: 58 RWLSF 62
>gi|187922194|ref|YP_001893836.1| Primase 2 [Burkholderia phytofirmans PsJN]
gi|187713388|gb|ACD14612.1| Primase 2 [Burkholderia phytofirmans PsJN]
Length = 637
Score = 44.4 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 162 NRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYD 221
N RY + E RA + +G + W+ + A+ G +I EW + Y
Sbjct: 2 NTRYLSEEERARAALA--MIPSGDYATWVDMAFALKQGF--GEAGFDIWDEWSRTAHNYS 57
Query: 222 EKSFNAKWDS 231
E++ W S
Sbjct: 58 ERAARVTWRS 67
>gi|238020410|ref|ZP_04600836.1| hypothetical protein GCWU000324_00291 [Kingella oralis ATCC 51147]
gi|237867390|gb|EEP68396.1| hypothetical protein GCWU000324_00291 [Kingella oralis ATCC 51147]
Length = 1444
Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 169 EIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAK 228
E+R LS S+ +W P+ AI + G GK++ +W + G Y A
Sbjct: 12 EVRTALSYIPTPS---SYADWYPMAYAIK-DALG-ENGKDLWHDWSRQGDNYKASVAEAT 66
Query: 229 WDS 231
W S
Sbjct: 67 WKS 69
>gi|167835892|ref|ZP_02462775.1| hypothetical protein Bpse38_05335 [Burkholderia thailandensis
MSMB43]
Length = 950
Score = 44.0 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W MA+ E EG + EW + + Y+ K W SF
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFALWNEWSQGAQNYNAKDACDVWKSF 63
>gi|171913150|ref|ZP_02928620.1| primase, putative [Verrucomicrobium spinosum DSM 4136]
Length = 599
Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 8/121 (6%)
Query: 6 VDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLML 65
+ H G+L G + + A D+D D+ V+ F R A +
Sbjct: 7 LQHLQTGNIGVLLGKESDNLCAIDID--DDDSVEPFLELNPRLRSTT--RTKGARGVQLW 62
Query: 66 FRMQETNLKKQKSEEKIQGHL-EFLAYGQQFVAYNIHPKTQRAY--TWSIAPHALKVEEL 122
R K K E + E+ A G Q V + IHP + Y + +P + E+
Sbjct: 63 IRCNGEYPKVTKIENEEGHPCGEWRADGGQSVIHGIHP-SGVEYRILVATSPILIAFSEI 121
Query: 123 P 123
Sbjct: 122 T 122
>gi|163803932|ref|ZP_02197766.1| hypothetical protein 1103602000458_AND4_04253 [Vibrio sp. AND4]
gi|159172269|gb|EDP57163.1| hypothetical protein AND4_04253 [Vibrio sp. AND4]
Length = 80
Score = 44.0 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 169 EIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAK 228
E+ G + + +W + A++ E ++I +W + G TYD++SFN+
Sbjct: 8 ELHEAEEALGYISPDLPYIDWSKIGRALYSEY--GDAARDIFEDWSEAGSTYDKRSFNSW 65
Query: 229 WDSF 232
W +F
Sbjct: 66 WKNF 69
>gi|302058867|ref|ZP_07250408.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv.
tomato K40]
Length = 897
Score = 43.7 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 15/107 (14%)
Query: 65 LFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPL 124
L+R K+ E G + Q + +IHP T + YTW P LP+
Sbjct: 163 LYRADAEKYKRLTVFELRAGLV------QDVLPPSIHPGTGQPYTWRTPPD---ASGLPV 213
Query: 125 LTPDEV------EYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRY 165
L D + + F + K+ K
Sbjct: 214 LIGDLLNVWNNWDVFKRGAEAACPWLPKDAKPTAKQKPKPKRAPVAG 260
>gi|75675821|ref|YP_318242.1| ATPase [Nitrobacter winogradskyi Nb-255]
gi|74420691|gb|ABA04890.1| RecA-family ATPase [Nitrobacter winogradskyi Nb-255]
Length = 666
Score = 43.7 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 35/241 (14%), Positives = 71/241 (29%), Gaps = 42/241 (17%)
Query: 4 TDVDHY----VYNGFGILCGIGTHPVYAFDVDVL-DEQVVDRFNNEFQSCC--GKPISRV 56
+D + FG++ + D+D D + + + C G P + V
Sbjct: 51 EQIDKWARENPGCNFGVVA--FASNLIIVDIDTKGDNGREEAWALWAELCASWGLPAALV 108
Query: 57 G--QAPKTLMLFRMQETN---LKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWS 111
Q+P + + + I+G + G VA + R Y
Sbjct: 109 PHVQSPSGGWHVYCTVPDGVDAATLRQPDAIKGRINIRCIG-YTVAAGSYYD-GRPY--- 163
Query: 112 IAPHALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIR 171
++ + S ++ ++R
Sbjct: 164 -----------------QLMPGAPPPHPAPEGLIQHCSGGTRKVTEHRSRQGEHSLRDVR 206
Query: 172 AFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDS 231
+ L+ E S+++WI + A+ +G E+ GR S + KW++
Sbjct: 207 SMLAWMNERDAFDSYEDWISIGQALKICF--WDDGLELWESVTVAGR----YSCDQKWET 260
Query: 232 F 232
F
Sbjct: 261 F 261
>gi|301386003|ref|ZP_07234421.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv.
tomato Max13]
Length = 811
Score = 43.7 bits (101), Expect = 0.020, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 15/107 (14%)
Query: 65 LFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPL 124
L+R K+ E G + Q + +IHP T + YTW P LP+
Sbjct: 77 LYRADAEKYKRLTVFELRAGLV------QDVLPPSIHPGTGQPYTWRTPPD---ASGLPV 127
Query: 125 LTPDEV------EYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRY 165
L D + + F + K+ K
Sbjct: 128 LIGDLLNVWNNWDVFKRGAEAACPWLPKDAKPTAKQKPKPKRAPVAG 174
>gi|109287999|ref|YP_654693.1| hypothetical protein MIV121R [Invertebrate iridescent virus 3]
gi|123808611|sp|Q196T9|VF184_IIV3 RecName: Full=Putative helicase 121R
gi|106073622|gb|ABF82151.1| hypothetical protein MIV121R [Aedes taeniorhynchus iridescent
virus]
Length = 941
Score = 43.7 bits (101), Expect = 0.020, Method: Composition-based stats.
Identities = 32/220 (14%), Positives = 71/220 (32%), Gaps = 32/220 (14%)
Query: 20 IGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQETNLKKQKSE 79
+G+ D+D E +D N+ G S + P +R+ + +
Sbjct: 172 LGSGKRLFADIDDAPENFIDDVTNKCWLMYGSSKSE-DKKP-----YRISQVYSGNLEPM 225
Query: 80 EKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTPD--EVEYFFEFF 137
+ + A++I P YT P + V+ + + P + +
Sbjct: 226 DLYE-------------AFSIKP----FYTKEEEPITVTVDNVKKILPQLLSISSIKKEV 268
Query: 138 DTITTPRDKEKSYRKLSK------IWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIP 191
+ TP D + + K ++ + + + L ++ N ++ W
Sbjct: 269 LNVKTPMDLKIPTKIYLKQELKDIEGENSETIKRNLKDAKDLLKILNKKRAN-EYNSWWD 327
Query: 192 VVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDS 231
+ + + G + I +W YD + W+S
Sbjct: 328 IGIILFNIGHGCEDAFTIWDKWSSYSDKYDPDACVQVWNS 367
>gi|238063625|ref|ZP_04608334.1| bifunctional DNA primase/polymerase [Micromonospora sp. ATCC 39149]
gi|237885436|gb|EEP74264.1| bifunctional DNA primase/polymerase [Micromonospora sp. ATCC 39149]
Length = 291
Score = 43.7 bits (101), Expect = 0.023, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 45/156 (28%), Gaps = 6/156 (3%)
Query: 2 VATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPK 61
VA +D + G + V DVD + + V +
Sbjct: 64 VAAIIDAVPRGQLALRTGAASGTVV-VDVDPRHGGHHSMAALITEGLLPRTRYAVTGSNG 122
Query: 62 TLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAY-NIHPKTQRAYTWSIAPHALKVE 120
+ +R + ++ A G V + H +T R Y W+ H L E
Sbjct: 123 LHLYYR--HPGTSVISRPMPGRYGIDIKADGGYVVLPPSRHQRTGRPYRWADGEHDL-TE 179
Query: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKI 156
P L D + + TT + +S
Sbjct: 180 MAPALL-DACQAAPTRTVSDTTRSTRTPGGGAISSP 214
>gi|330963895|gb|EGH64155.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 823
Score = 43.7 bits (101), Expect = 0.023, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 65 LFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPL 124
L+R N K+ E G + Q + +IHP T + YTW P E LP+
Sbjct: 89 LYRADAENYKRFTVFELRAGLV------QDVLPPSIHPGTGKPYTWRTPPD---AEGLPV 139
Query: 125 LTPDEVEYF 133
L D + +
Sbjct: 140 LISDLLNVW 148
>gi|315121956|ref|YP_004062445.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|315122924|ref|YP_004063413.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495358|gb|ADR51957.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496326|gb|ADR52925.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 68
Score = 43.3 bits (100), Expect = 0.025, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 1 MVATDVDHYVYNGFGILCGIGTHPVYAF 28
+ D+D GFG++CG+G P+YAF
Sbjct: 41 LSNEDIDKLPSCGFGLVCGVGEQPIYAF 68
>gi|116691425|ref|YP_836958.1| hypothetical protein Bcen2424_3324 [Burkholderia cenocepacia
HI2424]
gi|116649425|gb|ABK10065.1| conserved hypothetical protein [Burkholderia cenocepacia HI2424]
Length = 615
Score = 43.3 bits (100), Expect = 0.025, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDS 231
+ W+ + A+ + G E+ W + YD +S A W S
Sbjct: 22 DDYTTWVDMAFAVKHGL--GEAGFELWDAWSQTAPNYDARSARATWRS 67
>gi|291460141|ref|ZP_06599531.1| RecA-family ATPase [Oribacterium sp. oral taxon 078 str. F0262]
gi|291417482|gb|EFE91201.1| RecA-family ATPase [Oribacterium sp. oral taxon 078 str. F0262]
Length = 764
Score = 43.3 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 166 TNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSF 225
T ++ A L + + EWI V MA+ E +W + Y
Sbjct: 2 TQFDLTALLGYIDPSTLD--YQEWINVGMALKQE----GHTASEWDQWSRADARYKPGEC 55
Query: 226 NAKWDSF 232
KW +F
Sbjct: 56 FKKWMTF 62
>gi|91780506|ref|YP_555713.1| putative DNA replication primase [Burkholderia xenovorans LB400]
gi|91693166|gb|ABE36363.1| Putative DNA replication primase [Burkholderia xenovorans LB400]
Length = 644
Score = 43.3 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 165 YTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKS 224
RA L+ E + W+ + A+ G +I EW + Y E++
Sbjct: 7 SEEERARAALAMIPAE----DYATWVDMAFALKQGF--GEAGFDIWDEWSRTAHNYSERA 60
Query: 225 FNAKWDS 231
W S
Sbjct: 61 ARVTWRS 67
>gi|15674737|ref|NP_268911.1| hypothetical protein SPy_0671 [Streptococcus phage 370.1]
gi|94992064|ref|YP_600163.1| ATPase [Streptococcus phage 2096.1]
gi|13621860|gb|AAK33632.1| hypothetical protein, phage associated [Streptococcus phage 370.1]
gi|94545572|gb|ABF35619.1| RecA-family ATPase [Streptococcus phage 2096.1]
Length = 757
Score = 43.3 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
S+ +W+ V A+ +E + + W + Y + AKWDSF
Sbjct: 20 LSYQDWVNVGFALKHEGYTAMD----WDIWSQSDSRYKKGECFAKWDSF 64
>gi|53721419|ref|YP_110404.1| hypothetical protein BPSS0382 [Burkholderia pseudomallei K96243]
gi|52211833|emb|CAH37832.1| hypothetical protein BPSS0382 [Burkholderia pseudomallei K96243]
Length = 955
Score = 43.3 bits (100), Expect = 0.028, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W MA+ E EG + EW + + Y+ + W SF
Sbjct: 22 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNVRDARDVWKSF 68
>gi|170736572|ref|YP_001777832.1| primase 2 [Burkholderia cenocepacia MC0-3]
gi|169818760|gb|ACA93342.1| Primase 2 [Burkholderia cenocepacia MC0-3]
Length = 615
Score = 43.3 bits (100), Expect = 0.028, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDS 231
+ W+ + A+ + G E+ W + YD +S A W S
Sbjct: 22 DDYTTWVDMAFAVKHGL--GEAGFELWDAWSQTAPNYDARSARATWRS 67
>gi|170699160|ref|ZP_02890214.1| Primase 2 [Burkholderia ambifaria IOP40-10]
gi|170135955|gb|EDT04229.1| Primase 2 [Burkholderia ambifaria IOP40-10]
Length = 625
Score = 43.3 bits (100), Expect = 0.030, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 170 IRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKW 229
+RA L+ + ++ W+ + A+ EG EI W + Y+E++ W
Sbjct: 12 VRAALAVIPAD----DYETWVDMAFALKQGF--GDEGFEIWDAWSRTAANYNERAARTTW 65
Query: 230 DS 231
S
Sbjct: 66 RS 67
>gi|282848866|ref|ZP_06258256.1| primase C-terminal domain protein [Veillonella parvula ATCC 17745]
gi|282581371|gb|EFB86764.1| primase C-terminal domain protein [Veillonella parvula ATCC 17745]
Length = 693
Score = 43.3 bits (100), Expect = 0.031, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 168 IEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCK-LGRTYDEKSFN 226
I++R L S++EW+ V +A+H E I EW G + E
Sbjct: 5 IDLRELLEYIDPAQC--SYEEWLNVGLALHQE----GYPMFIWEEWSADDGERFHEGECA 58
Query: 227 AKWDSF 232
AKW+SF
Sbjct: 59 AKWESF 64
>gi|147677729|ref|YP_001211944.1| hypothetical protein PTH_1394 [Pelotomaculum thermopropionicum SI]
gi|146273826|dbj|BAF59575.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
Length = 645
Score = 42.9 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 24/193 (12%), Positives = 53/193 (27%), Gaps = 20/193 (10%)
Query: 8 HYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFR 67
Y + ++ G V D+D + + R + + R G+
Sbjct: 69 KYPGCNWAVVTGK-VSEVVVLDMDGPEGEASLR----GKHIPPTWMVRTGKGRHIYF--- 120
Query: 68 MQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTP 127
Q + I ++ G VA + + Y W L ++P P
Sbjct: 121 -QWPGF-PVECRTGILPGVDIRGDGGYVVAPGSVHVSGKKYGWVDG---LSPADMPE--P 173
Query: 128 DEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHD 187
E + + + P S ++ + ++ F + +
Sbjct: 174 AEAPAWL--VELLKRPGGNSSSKIDPVRVLAGVPEGQ---RDVTLFRYACRLRTQGLTRE 228
Query: 188 EWIPVVMAIHYET 200
E + +V+
Sbjct: 229 EALRLVLEAARNC 241
>gi|325292915|ref|YP_004278779.1| regulatory protein RepA [Agrobacterium sp. H13-3]
gi|325060768|gb|ADY64459.1| putative regulatory protein RepA [Agrobacterium sp. H13-3]
Length = 747
Score = 42.9 bits (99), Expect = 0.036, Method: Composition-based stats.
Identities = 28/216 (12%), Positives = 57/216 (26%), Gaps = 27/216 (12%)
Query: 7 DHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSC---CGKPI--SRVGQAPK 61
Y G+ G T +A D+D + F + G +RV
Sbjct: 85 TKYPKAAVGLPTGEKTG-FFALDIDNK-PGGANGF-DWLSEMEAEHGPLPDTARVTSPNG 141
Query: 62 TLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEE 121
L ++ ++ + ++ + G +A R+Y W
Sbjct: 142 GLHIYFKYVVG---TRNRGALGAGVDIRSEGGYVLAAGSTMANGRSYKWETD-------- 190
Query: 122 LPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEF 181
T + + D + + LS + + E+
Sbjct: 191 ----TREIADAPAWLLDLLLPKSAPAHTQYSLSAATNNAYVDAAVDRELADLAGAPMGSR 246
Query: 182 YNGSHDEWIPVVMAIHYETRGSAEGKEI----VREW 213
N +D + + G +E + + R W
Sbjct: 247 NNALNDAAFSIGTIVGAGALGESEARALLQDVARGW 282
>gi|254497903|ref|ZP_05110668.1| putative truncated Phage / plasmid primase P4 [Legionella
drancourtii LLAP12]
gi|254352901|gb|EET11671.1| putative truncated Phage / plasmid primase P4 [Legionella
drancourtii LLAP12]
Length = 301
Score = 42.9 bits (99), Expect = 0.037, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 45/174 (25%), Gaps = 18/174 (10%)
Query: 6 VDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLML 65
+ + + GI+ G + DVD + R PI +
Sbjct: 80 LQKWPWANVGIVTG-NISNLLILDVDGGEGINSLR----GLDLPVSPIVVTARGHH--YY 132
Query: 66 FRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPL- 124
F + + +++ G A +T Y WS P + + P
Sbjct: 133 FNCPSILSNVSTTRSGLLSNVDTRGRGGYITAPPSIHETGHQYYWS-EPLDGDLPDAPEW 191
Query: 125 -----LTPDEVEY----FFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIE 169
L P ++ Y F + + L+ N R
Sbjct: 192 LIQRLLPPVKISYKMPIFIDRTTSHYARTALLNETTALAAAPPGTRNMRLNQAA 245
>gi|325266444|ref|ZP_08133121.1| conjugal transfer mating pair stabilization protein TraN [Kingella
denitrificans ATCC 33394]
gi|324981887|gb|EGC17522.1| conjugal transfer mating pair stabilization protein TraN [Kingella
denitrificans ATCC 33394]
Length = 1854
Score = 42.9 bits (99), Expect = 0.039, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 185 SHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+ W V A+ E G+ + +W + ++E+ NA+W SF
Sbjct: 23 DRETWWKVGAALKSEFD--EGGRGLWEDWSRSYPKWNERESNAQWKSF 68
>gi|323340042|ref|ZP_08080308.1| RecA-family ATPase [Lactobacillus ruminis ATCC 25644]
gi|323092548|gb|EFZ35154.1| RecA-family ATPase [Lactobacillus ruminis ATCC 25644]
Length = 769
Score = 42.5 bits (98), Expect = 0.046, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGR-TYDEKSFNAKWDSFD 233
++ W+ V MA+ +E + W + Y + KW+ FD
Sbjct: 18 LDYNGWVQVGMALKHE----GYSVDDWDTWSQRDSARYHDGECERKWNGFD 64
>gi|91784038|ref|YP_559244.1| putative DNA replication primase [Burkholderia xenovorans LB400]
gi|91687992|gb|ABE31192.1| Putative DNA replication primase [Burkholderia xenovorans LB400]
Length = 621
Score = 42.5 bits (98), Expect = 0.049, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDS 231
+ W+ + A+ + EG EI W + Y++++ W S
Sbjct: 22 DDYATWVDMAFALKHGF--GDEGFEIWDAWSRTAANYNDRAARTTWRS 67
>gi|307269951|ref|ZP_07551277.1| primase 2 [Enterococcus faecalis TX4248]
gi|306513741|gb|EFM82347.1| primase 2 [Enterococcus faecalis TX4248]
Length = 758
Score = 42.5 bits (98), Expect = 0.050, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 157 WKSHNNRRYTNIEIRAFLSCFGEEFYNGS----HDEWIPVVMAIHYETRGSAEGKEIVRE 212
+ N +R N ++ L Y + EW+ V MA+ E + + +
Sbjct: 1 MRLKNKKRELNTQMENKLDLIELLEYIDPASLGYQEWVNVGMALKQEGYTAVD----WDQ 56
Query: 213 WCKLGRTYDEKSFNAKWDSF 232
W + Y KW+SF
Sbjct: 57 WSQSDSRYHSGECFKKWESF 76
>gi|134291212|ref|YP_001114981.1| putative DNA replication primase protein [Burkholderia
vietnamiensis G4]
gi|134134401|gb|ABO58726.1| putative DNA replication primase protein [Burkholderia
vietnamiensis G4]
Length = 620
Score = 42.5 bits (98), Expect = 0.050, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 170 IRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKW 229
RA L+ + + W+ + A+ EG EI W + Y+E++ W
Sbjct: 12 ARAALAVIPAD----DYGTWVDMAFALKQGF--GDEGFEIWDAWSRTAPNYNERAARTTW 65
Query: 230 DS 231
S
Sbjct: 66 RS 67
>gi|229583958|ref|YP_002842459.1| Bifunctional DNA primase/polymerase [Sulfolobus islandicus M.16.27]
gi|228019007|gb|ACP54414.1| Bifunctional DNA primase/polymerase [Sulfolobus islandicus M.16.27]
Length = 865
Score = 42.5 bits (98), Expect = 0.053, Method: Composition-based stats.
Identities = 25/185 (13%), Positives = 60/185 (32%), Gaps = 21/185 (11%)
Query: 11 YNGFGILCGIGTHPVYAFDVDVLDEQVVDRF-------NNEFQSCCGKPISRVGQAPKTL 63
N I+CG + + D D D ++ ++F + + + + G+
Sbjct: 54 ENNIAIICGKVSGNLVVIDFD--DAEIYEKFLKEVEKDSELAEIINNTWLVKTGKGYHIY 111
Query: 64 MLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVA-YNIHPKTQRAYTWSIAPHALKVEEL 122
+ + + + ++ G VA +IHP + + Y + E+
Sbjct: 112 LRIDIDKP------VKIGKLQKIDVKGEGGYVVAPPSIHP-SGKTYEFVRFSKTTG-HEI 163
Query: 123 PLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFY 182
++T ++ + + +T + + K H+ + N +R
Sbjct: 164 RVITEEQYKKILTILENVTESTITD---TAIEKGEIRHDKKLSENTILRIIDILSPVYKE 220
Query: 183 NGSHD 187
HD
Sbjct: 221 GVRHD 225
>gi|294486130|gb|ADE87946.1| putative primase [Escherichia phage vB_EcoM_ECO1230-10]
Length = 767
Score = 42.1 bits (97), Expect = 0.053, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 165 YTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKS 224
T EI LS + W+ + MA+ E G G + +W + Y+ K
Sbjct: 10 LTEQEIAEALSYID---AGCDRETWVRMAMAVKSE-LGDG-GFTVWNDWSRQSDKYNSKD 64
Query: 225 FNAKWDS 231
W S
Sbjct: 65 ARDTWKS 71
>gi|293402156|ref|ZP_06646294.1| RecA-family ATPase [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304263|gb|EFE45514.1| RecA-family ATPase [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 735
Score = 42.1 bits (97), Expect = 0.054, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 167 NIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKL-GRTYDEKSF 225
+ ++ L + + W+ V MA+ +E +A+ W Y +
Sbjct: 4 DTDLIELLKYIDPSSLD--YQSWVNVGMALKHEGYSAAD----WDAWSMKDASRYHKDEC 57
Query: 226 NAKWDSF 232
KWD+F
Sbjct: 58 FKKWDTF 64
>gi|331091444|ref|ZP_08340282.1| hypothetical protein HMPREF9477_00925 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330404000|gb|EGG83550.1| hypothetical protein HMPREF9477_00925 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 741
Score = 42.1 bits (97), Expect = 0.061, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 162 NRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYD 221
R Y +I FL+ ++ EWI V MA+ G + W + Y
Sbjct: 2 ERGYDIKQILDFLN-----PSELNYQEWIYVGMALK--EDGYD--VSVWDSWSRSDSRYH 52
Query: 222 EKSFNAKWDSF 232
KW F
Sbjct: 53 SGECQRKWAGF 63
>gi|331090165|ref|ZP_08339053.1| hypothetical protein HMPREF1025_02636 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330402111|gb|EGG81683.1| hypothetical protein HMPREF1025_02636 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 668
Score = 42.1 bits (97), Expect = 0.061, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 175 SCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+ + S +WI V MA+ E I +W + + Y KW+SF
Sbjct: 8 ALKAIDVATLSRADWIAVGMALKEE----GYPCSIWDDWSRNDKRYHPGECERKWNSF 61
>gi|330970611|gb|EGH70677.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 823
Score = 42.1 bits (97), Expect = 0.067, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 65 LFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPL 124
L+R K+ E G + Q + +IHP T + YTW P LP+
Sbjct: 89 LYRADAEQYKRFTVFELRAGLV------QDVLPPSIHPGTGQPYTWRTPPD---ASGLPV 139
Query: 125 LTPDEV------EYFFEFFDTITTPRDKEKSYRKLSKIWKS 159
L D + + F + K+ K
Sbjct: 140 LISDLLNVWNNWDVFKRGAEAACPWLPKDAKPTGKQKPKPK 180
>gi|330939433|gb|EGH42789.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 897
Score = 41.7 bits (96), Expect = 0.078, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 65 LFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPL 124
L+R N K+ E G + Q + +IHP T + YTW P LP+
Sbjct: 163 LYRADAENYKRFTVFELRAGLV------QDVLPPSIHPGTGKPYTWRTPPD---ASGLPI 213
Query: 125 LTPDEVEYF 133
L D + +
Sbjct: 214 LISDLLNVW 222
>gi|323139650|ref|ZP_08074692.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242]
gi|322395082|gb|EFX97641.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242]
Length = 265
Score = 41.7 bits (96), Expect = 0.079, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 11/122 (9%)
Query: 7 DHYVYNGFGILCGIGTHPVYAFDVDVLDEQ--VVDRFNNEFQSCCGKPISRVGQAPKTLM 64
+ + GI+ G + DVD + + ++ + G +
Sbjct: 56 ERWPDANIGIVTGE-VSNLIVLDVDPKHGGDIALKQLERRYRPLPPTVEAVTGGGGRHFY 114
Query: 65 LFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAY-NIHPKTQRAYTWSI--APHALKVEE 121
+ QG ++ G VA ++HP + R Y W+ P + +
Sbjct: 115 F---THPGFLTRNRAGLAQG-VDLRGDGGYIVAPPSVHP-SGRPYQWASGHGPDEIALAP 169
Query: 122 LP 123
LP
Sbjct: 170 LP 171
>gi|254196284|ref|ZP_04902708.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
gi|169653027|gb|EDS85720.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
Length = 950
Score = 41.7 bits (96), Expect = 0.086, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+ W MA+ E EG + EW + Y+ + W SF
Sbjct: 17 DDRNTWRQAGMALKAEF--GEEGFTLWNEWSLGAQNYNARDARDVWKSF 63
>gi|167739962|ref|ZP_02412736.1| putative helicase [Burkholderia pseudomallei 14]
Length = 317
Score = 41.7 bits (96), Expect = 0.088, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 185 SHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYD-EKSFNAKWDSFD 233
DEW+ + MA + S E EWC G Y E+ A W S D
Sbjct: 20 ERDEWVRIGMA----YKASGGDTETWVEWCATGANYSGERDARAVWKSID 65
>gi|255690110|ref|ZP_05413785.1| primase C 2 family protein [Bacteroides finegoldii DSM 17565]
gi|260624392|gb|EEX47263.1| primase C 2 family protein [Bacteroides finegoldii DSM 17565]
Length = 625
Score = 41.3 bits (95), Expect = 0.097, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 3/96 (3%)
Query: 135 EFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVM 194
E ++ + + + S + + R + + + G + NG +D W+ V
Sbjct: 7 EEWENVPSNTANSNTSNTPSAYSNTSEDTRAKVERVLSLIEQKGIDITNG-YDNWLKVGF 65
Query: 195 AIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWD 230
A+ E G+ + Y + +++
Sbjct: 66 ALTSEF--QEAGRGFFHRVSRQNPEYKASDTDKQYN 99
>gi|167463641|ref|ZP_02328730.1| RecA-family ATPase [Paenibacillus larvae subsp. larvae BRL-230010]
Length = 750
Score = 41.3 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 169 EIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRT-YDEKSFNA 227
++ A L S+ +W+ V MA+ YE +++ +W K T Y
Sbjct: 6 DLVALLEYID--PSYLSYQDWVAVGMALKYEGYTASD----WDDWSKRDSTRYHPGECFK 59
Query: 228 KWDSFD 233
KW +F+
Sbjct: 60 KWSTFE 65
>gi|313896490|ref|ZP_07830041.1| primase C-terminal domain protein [Selenomonas sp. oral taxon 137
str. F0430]
gi|312974914|gb|EFR40378.1| primase C-terminal domain protein [Selenomonas sp. oral taxon 137
str. F0430]
Length = 669
Score = 41.3 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 167 NIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFN 226
+ I + L + WI V MA+ E I +W + Y
Sbjct: 2 DKNILSALKYINVAEVD--RATWISVGMALKEE----GYPCSIWDDWSQRDPRYHPGECE 55
Query: 227 AKWDSFD 233
KW+ F+
Sbjct: 56 KKWEGFN 62
>gi|224541910|ref|ZP_03682449.1| hypothetical protein CATMIT_01083 [Catenibacterium mitsuokai DSM
15897]
gi|224525144|gb|EEF94249.1| hypothetical protein CATMIT_01083 [Catenibacterium mitsuokai DSM
15897]
Length = 748
Score = 41.3 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 183 NGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRT-YDEKSFNAKWDSFD 233
S+ EW V MA+ +E +++ W Y KW+SF+
Sbjct: 17 ELSYQEWTNVGMALKHEGYEASD----WDSWSSQDSERYKRGECFTKWNSFN 64
>gi|312900435|ref|ZP_07759744.1| primase 2 [Enterococcus faecalis TX0470]
gi|311292457|gb|EFQ71013.1| primase 2 [Enterococcus faecalis TX0470]
Length = 752
Score = 41.3 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 186 HDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+ EW+ V MA+ E + + +W + Y KW+SF
Sbjct: 34 YQEWVNVGMALKQEGYTAVD----WDQWSQSDSRYHSGECFKKWESF 76
>gi|51870034|ref|YP_073585.1| predicted ATPase [Lymphocystis disease virus - isolate China]
gi|51858242|gb|AAU10926.1| predicted ATPase [Lymphocystis disease virus - isolate China]
Length = 865
Score = 41.0 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 5/105 (4%)
Query: 125 LTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNG 184
+ P + E + F + + RK I N +++ ++ EE +
Sbjct: 220 IMPQDKEPYLISFKNVKPKLIDKILSRKAEAIL----NEETRPSKLKYLINLLPEECAD- 274
Query: 185 SHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKW 229
D W+ + T GS EG ++ + K Y+E W
Sbjct: 275 DRDVWLETGFCVWQITDGSIEGYDVWTSFSKKSEKYNEDECFDLW 319
>gi|257080671|ref|ZP_05575032.1| RecA-family ATPase [Enterococcus faecalis E1Sol]
gi|256988701|gb|EEU76003.1| RecA-family ATPase [Enterococcus faecalis E1Sol]
Length = 743
Score = 41.0 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 186 HDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+ EW+ V MA+ E + + +W + Y KW+SF
Sbjct: 25 YQEWVNVGMALKQEGYTAVD----WDQWSQSDSRYHSGECFKKWESF 67
>gi|167620889|ref|ZP_02389520.1| DNA primase [Burkholderia thailandensis Bt4]
Length = 205
Score = 41.0 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
D W MA+ E EG + EW + ++Y+ K W SF
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFALWNEWGQGAQSYNAKDARDVWKSF 63
>gi|167462159|ref|ZP_02327248.1| RecA-family ATPase [Paenibacillus larvae subsp. larvae BRL-230010]
Length = 768
Score = 41.0 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 14/87 (16%)
Query: 148 KSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGK 207
K+ K + +++ + L + N + EWI V MA+ YE +++
Sbjct: 10 SKQGKVEKPMEHK-------LDLVSLLEYIDPSYLN--YQEWINVGMALKYEGYTASD-- 58
Query: 208 EIVREWCKLGRT-YDEKSFNAKWDSFD 233
+W K T Y KW +F+
Sbjct: 59 --WDDWSKRDSTRYHPGECFKKWTTFE 83
>gi|91787211|ref|YP_548163.1| Phage/plasmid primase P4-like protein [Polaromonas sp. JS666]
gi|91696436|gb|ABE43265.1| Phage/plasmid primase P4-like protein [Polaromonas sp. JS666]
Length = 771
Score = 41.0 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 18/125 (14%)
Query: 12 NGFGILCGIGTHPVYAFDVDVLD---EQVVDRFNNEFQSCCGKPISRV--GQAPKTLMLF 66
G+ P A D+D + +R + R+ G+ + +L+
Sbjct: 71 CNIGLAHAYSNPPTCALDIDNMSLARPWFAERGIDLDALLNAPGAVRIHSGRPGRAKLLY 130
Query: 67 RMQET------NLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHAL-KV 119
R+ + + + Q + + HP T R Y W + +
Sbjct: 131 RLPQPLPSCTLPWGELRCASGNG------TTWQDVLPPSTHPDTGRPYAWIGDIANIQPI 184
Query: 120 EELPL 124
+ PL
Sbjct: 185 PDAPL 189
>gi|309702931|emb|CBJ02262.1| putative virulence associated protein virE [Escherichia coli ETEC
H10407]
Length = 574
Score = 41.0 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 84 GHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTPDEVE----YFFEFFDT 139
G +E LA GQQFVA H + W +E P +T +++E E
Sbjct: 2 GIIELLANGQQFVACGTH-SSGARIEWDGGL----PDEPPAITGEQLETLWQRLAEQLPV 56
Query: 140 ITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAF 173
T R S + ++ +
Sbjct: 57 SVTTEAGNTKMRDRSAFTPGATDDTAEYLDANGW 90
>gi|227828130|ref|YP_002829910.1| Bifunctional DNA primase/polymerase [Sulfolobus islandicus M.14.25]
gi|227459926|gb|ACP38612.1| Bifunctional DNA primase/polymerase [Sulfolobus islandicus M.14.25]
Length = 855
Score = 41.0 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 29/190 (15%), Positives = 73/190 (38%), Gaps = 21/190 (11%)
Query: 2 VATDVDHY---VYNGFGILCGIGTHPVYAFDVDVLDEQVVDRF-------NNEFQSCCGK 51
++++ + N I+CG + + D D D ++ ++F N +S
Sbjct: 42 SISEIEKWFKDTDNNIAIVCGKVSGNLVVIDFD--DTEIYEKFLKEVEKDNELSESVNNT 99
Query: 52 PISRVGQAPKTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVA-YNIHPKTQRAYTW 110
+ G+ + R+ N K ++ + ++ G VA +IHP + + Y +
Sbjct: 100 WLVETGKGYHIYL--RVD--NDKPVRTAKLP--KIDIKGEGGYVVAPPSIHP-SGKRYEF 152
Query: 111 SIAPHALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEI 170
E+ +++ ++ + + IT + +E+ + K + + + +I
Sbjct: 153 VRFSKTTG-HEIRVISEEQYQKLLALLERITGVKVEEEVSGENRKFRELTSEKVLKIADI 211
Query: 171 RAFLSCFGEE 180
A + G+
Sbjct: 212 IAPIYKEGQR 221
>gi|284162058|ref|YP_003400681.1| Bifunctional DNA primase/polymerase [Archaeoglobus profundus DSM
5631]
gi|284012055|gb|ADB58008.1| Bifunctional DNA primase/polymerase [Archaeoglobus profundus DSM
5631]
Length = 309
Score = 40.6 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 17/139 (12%)
Query: 14 FGILCGIGTHPVYAFDVDVL-----DEQVVDRFNNEFQSCC-GKPISRVGQAPKTL---- 63
GI+ G + + DVD + + + + G + + P+ L
Sbjct: 68 VGIVTGSLSK-ILRIDVDQPKILGWNPEPAIKKGGLAHTTSRGVALVVRSENPEVLAFSK 126
Query: 64 -MLFRMQETN----LKKQKSEEKIQGHLEFLAYGQQFVA-YNIHPKTQRAYTWSIAPHAL 117
++ R +E + + + ++ LE L G+QFVA +IHP + Y W
Sbjct: 127 KLVKRKEEIDQSLLFYPEDAGKETVTILEILGDGRQFVAPPSIHPDKRTRYEWLTPLPNS 186
Query: 118 KVEELPLLTPDEVEYFFEF 136
+ L + + +E+
Sbjct: 187 PDQILTINSIEELYSLLLE 205
>gi|331019769|gb|EGH99825.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 897
Score = 40.6 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 65 LFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPL 124
L+R K+ E G + Q + +IHP T + YTW P LP+
Sbjct: 163 LYRADAEQYKRFTVFELRAGLV------QDVLPPSIHPGTGQPYTWRTPPD---ASGLPV 213
Query: 125 LTPDEVEYF 133
L D + +
Sbjct: 214 LIGDLLNVW 222
>gi|225575522|ref|ZP_03784132.1| hypothetical protein RUMHYD_03614 [Blautia hydrogenotrophica DSM
10507]
gi|225037272|gb|EEG47518.1| hypothetical protein RUMHYD_03614 [Blautia hydrogenotrophica DSM
10507]
Length = 616
Score = 40.6 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 24/190 (12%)
Query: 10 VYNGFGILCGIGTHPVYAFDVDVLDEQVVD---RFNNEFQSCCGKPISRV---GQAPKTL 63
+ GI G + + D+D+ +E+ + + P + + G
Sbjct: 60 PQHNIGIATGSRSGGLVVIDLDIDEEKGKNGYETLKEWQKEHGDLPETWISITGNG-GYH 118
Query: 64 MLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAY-NIHPKTQRAYTWSIAPHALKVEEL 122
+R N K + ++ G VA +IHP Y W P ++ ++
Sbjct: 119 YFYRDTAANKNKVALYDG----VDIRGEGGYIVAPPSIHPN-GHTYEWEQEPGEYEIAQV 173
Query: 123 PLLTPDEVEYFF-------EFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLS 175
+V F + + + + L ++ S ++ IRA +
Sbjct: 174 ----NGQVIKFLLGPAPEKKQYFHQEEIIPEGQRVSTLIQLIGSQRSKGLGEAAIRAAVQ 229
Query: 176 CFGEEFYNGS 185
EE
Sbjct: 230 AENEEKCIPP 239
>gi|218670885|ref|ZP_03520556.1| hypothetical protein RetlG_04143 [Rhizobium etli GR56]
Length = 266
Score = 40.6 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 38/130 (29%), Gaps = 5/130 (3%)
Query: 106 RAYTWSIAPHALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHN---N 162
W + H + + + + D + R+ +
Sbjct: 33 HPMRWPGSWHTKGAPNMCSIVGGDEQREVRLADAAKALDVDTAASRERGDRQVGQSFTTR 92
Query: 163 RRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDE 222
+T ++ + D++ MA + GS+ G E R + +D+
Sbjct: 93 TEWTEAQLMDVAEKLPN--TDLDWDDFNSTGMAFYDAAHGSSHGYEAFRTFSAKSAKHDD 150
Query: 223 KSFNAKWDSF 232
A+W+ +
Sbjct: 151 AETEARWEHY 160
>gi|170694124|ref|ZP_02885279.1| Primase 2 [Burkholderia graminis C4D1M]
gi|170140864|gb|EDT09037.1| Primase 2 [Burkholderia graminis C4D1M]
Length = 632
Score = 40.6 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 162 NRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYD 221
NRRY E RA + + + W+ + A+ G I +W + Y
Sbjct: 2 NRRYLTEEERARAALATIPAED--YMTWVDMAFALKQGF--GEAGFPIWDDWSRTAHNYS 57
Query: 222 EKSFNAKWDS 231
E + W S
Sbjct: 58 ESAARVTWRS 67
>gi|260893044|ref|YP_003239141.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4]
gi|260865185|gb|ACX52291.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4]
Length = 283
Score = 40.2 bits (92), Expect = 0.21, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 7/119 (5%)
Query: 8 HYVYNGFGILCGIGTHPVYAFDVDVLD-EQVVDRFNNEFQSCCGKPISRVGQAPKTLMLF 66
+ + G+ G + DVD + E + + + ++ + +LF
Sbjct: 66 RWPWANIGVATGSISGFFV-LDVDGPEGEDSLYELVKRHGELP-ETVEQITGSGGRHLLF 123
Query: 67 RMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIA--PHALKVEELP 123
RM E K ++ L+ G VA + R Y W + P ++V E P
Sbjct: 124 RMPEGRAIGNKV--RLAPGLDVRGEGGYVVAAPSLHASGRRYEWEFSSRPGEVEVAEAP 180
>gi|49188486|ref|YP_025316.1| hypothetical protein pIT3_6 [Sulfolobus solfataricus]
gi|46560102|gb|AAT00521.1| RepA [Sulfolobus solfataricus]
Length = 915
Score = 40.2 bits (92), Expect = 0.21, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 54/187 (28%), Gaps = 21/187 (11%)
Query: 8 HYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNN-------EFQSCCGKPISRVGQAP 60
I+ G + + D D D V F + I++ G+
Sbjct: 80 RDPSTNIAIITGAVSGNLVGIDFD--DPNVYTDFADKLFYDPILGDKAYSTWITKTGKGY 137
Query: 61 KTLMLFRMQETNLK--KQKSEEKIQGHLEFLAYGQQFVA-YNIHPKTQRAYTWSIAPHAL 117
+ + K ++ + H++ A G FVA +IHP + Y + P
Sbjct: 138 HIYFRIDVDKGVFKQIFRQKIDIEGKHIDMKAEGGYFVAPPSIHP-SGSRYEFLAGP--- 193
Query: 118 KVEELP-LLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSC 176
+ + P +L+ E E + E R L+ + S
Sbjct: 194 PMNKEPAVLSLKEWERLLKLLGV----EPWEGLLRILNAPDSATPGNGKAEQRKEQSASQ 249
Query: 177 FGEEFYN 183
N
Sbjct: 250 TPRNVSN 256
>gi|56694890|ref|YP_164400.1| hypothetical protein BCBBV1cgp22 [Bacillus phage BCJA1c]
gi|52631317|gb|AAU85069.1| 22 [Bacillus phage BCJA1c]
Length = 740
Score = 40.2 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 183 NGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKL-GRTYDEKSFNAKWDSFD 233
+ EW+ V MA+ E +++ ++ W K G Y KW +F+
Sbjct: 18 YLDYQEWLNVGMALKSEGYTASDWED----WSKRDGPRYHPGECFKKWTTFE 65
>gi|107027183|ref|YP_624694.1| hypothetical protein Bcen_4842 [Burkholderia cenocepacia AU 1054]
gi|105896557|gb|ABF79721.1| conserved hypothetical protein [Burkholderia cenocepacia AU 1054]
Length = 615
Score = 40.2 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDS 231
+ W+ + A+ + G E+ W + D +S A W S
Sbjct: 22 DDYTTWVDMAFAVKHGL--GEAGFELWDAWSQTAPNCDARSARATWRS 67
>gi|332976117|gb|EGK12985.1| N- superfamily bifunctional DNA primase/polymerase [Desmospora sp.
8437]
Length = 798
Score = 40.2 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 37/220 (16%), Positives = 77/220 (35%), Gaps = 25/220 (11%)
Query: 7 DHYVYNGFGILCGIGTHPVYAFDVDVLD-EQVVDRFNNEFQSCCGKPISRVGQAPKTLML 65
+ + G+ G ++A DVD + ++ + ++ E G L
Sbjct: 72 EKNSWANVGVPMGKVNG-LFAIDVDGPEGQETLQKWIQEHGELPATWQVLTGGGGMQLW- 129
Query: 66 FRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTW--SIAPHALKV---- 119
+R+ ++ S +KI +++ G Q VA ++ Y W + P LK
Sbjct: 130 YRV-PKGMEIPNSVKKIGINVDIRGTGGQSVAPGSLHQSGNRYRWAPTRGPEDLKPSAPP 188
Query: 120 ----EELPLLTPDEVEYFF-----EFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEI 170
E++ + D+ + E + +P+ K K + L S R E
Sbjct: 189 EWLVEKIREVIADQQQAKLSKIQTEEINLSLSPKGKPKFEKLLQLRKSSKKFREILEGEK 248
Query: 171 R------AFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSA 204
++ NG D+ I ++ ++ ++G
Sbjct: 249 TFRSPSERDMAMANIAAVNGWTDQEIADLLIMYRNSQGDD 288
>gi|290959118|ref|YP_003490300.1| hypothetical protein SCAB_47031 [Streptomyces scabiei 87.22]
gi|260648644|emb|CBG71756.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 289
Score = 39.8 bits (91), Expect = 0.28, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 37/132 (28%), Gaps = 27/132 (20%)
Query: 13 GFGILCGIGTHPVYAFDVDVLD-EQVVDRFNNEFQSCCGKPISRV-------GQAPKTLM 64
G+GI CG+ H + D+D V G+
Sbjct: 83 GYGIACGLHPHHLIGVDLDTKSGTDSSAALRELALRHLFTIPETVVVLTPSGGRH----- 137
Query: 65 LFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVA---------YNIHPKTQRAYTWSIAPH 115
++ ++ S ++ ++ G V Y P T ++P
Sbjct: 138 IWLTGPPDVVVPNSASRLAPGIDIRGAGGYLVGPGSRTDHGVYGTAPGTSH-----LSPA 192
Query: 116 ALKVEELPLLTP 127
L LL+P
Sbjct: 193 PCPPALLRLLSP 204
>gi|296447833|ref|ZP_06889745.1| phage/plasmid primase, P4 family [Methylosinus trichosporium OB3b]
gi|296254633|gb|EFH01748.1| phage/plasmid primase, P4 family [Methylosinus trichosporium OB3b]
Length = 892
Score = 39.4 bits (90), Expect = 0.37, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 189 WIPVVMAIHYETRGSAEGKEIVREWCK--LGRTYDEKSFNAKWDSF 232
WI + A++ E GSAEG+E+ +W + A W +F
Sbjct: 322 WIKIGAALYVEFGGSAEGEELFEDWTALREEGNVKPEKDAASWRNF 367
>gi|228861234|ref|YP_002854256.1| putative D5 family NTPase/ATPase [Soft-shelled turtle iridovirus]
gi|194307514|gb|ACF42244.1| putative D5 family NTPase/ATPase [Soft-shelled turtle iridovirus]
Length = 975
Score = 39.4 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 5/110 (4%)
Query: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
+ P V ++ + R+ W + + + + + +
Sbjct: 260 DFTAANPGRVTRLADYSAVMAKLDVA----RQRKPAWNTDATKAHRLKRVTDLTAMLTAD 315
Query: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWD 230
+ W+ V + +T GSAEG ++ + K DE W+
Sbjct: 316 LAD-DRQTWLNVGFCLWQQTSGSAEGYKVWLSFSKKSDKCDEDECWTIWN 364
>gi|260893832|ref|YP_003239929.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4]
gi|260865973|gb|ACX53079.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4]
Length = 283
Score = 39.4 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 7/119 (5%)
Query: 8 HYVYNGFGILCGIGTHPVYAFDVDVLD-EQVVDRFNNEFQSCCGKPISRVGQAPKTLMLF 66
+ + GI G + DVD + E + + + ++ + +LF
Sbjct: 66 RWPWANIGIATGKASGFFV-LDVDGPEGEDSLYELVRRHGELP-ETVEQITGSGGRHLLF 123
Query: 67 RMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIA--PHALKVEELP 123
RM E K ++ L+ G VA R Y W + P +++ E P
Sbjct: 124 RMPEGRAIGNKV--RLAPGLDVRGEGGYIVAAPSIHAGGRRYEWEFSSRPGEVQIAEAP 180
>gi|211731819|gb|ACJ10131.1| predicted P-loop ATPase [Bacteriophage APSE-6]
Length = 661
Score = 39.0 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 153 LSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVV--MAIHYETRGSAEGKEIV 210
L+++ N T ++R+ L ++ WI + +A +TR E K +
Sbjct: 128 LTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWIDMGNRLARFKDTRFEDEAKTMW 187
Query: 211 REWCKLGRTYDEKSFNAKWDSF 232
+W D ++ AKW
Sbjct: 188 LDWSSAAAKGDIEAAEAKWAEL 209
>gi|211731751|gb|ACJ10090.1| predicted P-loop ATPase [Bacteriophage APSE-4]
Length = 661
Score = 39.0 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 153 LSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVV--MAIHYETRGSAEGKEIV 210
L+++ N T ++R+ L ++ W+ + +A +TR E K +
Sbjct: 128 LTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFEDEAKTMW 187
Query: 211 REWCKLGRTYDEKSFNAKWDSF 232
+W D ++ AKW
Sbjct: 188 LDWSSAAAKGDIEAAEAKWAEL 209
>gi|49237319|ref|YP_031600.1| putative D5 family NTPase/ATPase [Frog virus 3]
gi|47060137|gb|AAT09681.1| putative D5 family NTPase/ATPase [Frog virus 3]
Length = 973
Score = 39.0 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 5/110 (4%)
Query: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
+ P V ++ + R+ W + + + + + +
Sbjct: 260 DFTAANPGRVTRLADYSAVMAKLDVA----RQRKPAWNTDATKAHRLKRVTDLTAMLTAD 315
Query: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWD 230
+ W+ V + +T GSAEG ++ + K DE W+
Sbjct: 316 LAD-DRQTWLNVGFCLWQQTSGSAEGYKVWLSFSKKSDKCDEDECWTIWN 364
>gi|313892469|ref|ZP_07826059.1| primase C-terminal domain protein [Dialister microaerophilus UPII
345-E]
gi|313119151|gb|EFR42353.1| primase C-terminal domain protein [Dialister microaerophilus UPII
345-E]
Length = 694
Score = 39.0 bits (89), Expect = 0.48, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 168 IEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGR-TYDEKSFN 226
I++R L + + EW+ V MA+++E E+ W +++
Sbjct: 4 IDLRPLLQYINPSILD--YQEWLSVGMALNHE----GYPYEVWETWSSRDSARFNDGECE 57
Query: 227 AKWDSF 232
K+++F
Sbjct: 58 KKYNTF 63
>gi|255282238|ref|ZP_05346793.1| RecA-family ATPase [Bryantella formatexigens DSM 14469]
gi|255267186|gb|EET60391.1| RecA-family ATPase [Bryantella formatexigens DSM 14469]
Length = 744
Score = 39.0 bits (89), Expect = 0.52, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 182 YNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+ S+ EW V MA+ E + W + Y + KW+ F
Sbjct: 18 ADLSYTEWCAVGMALKEEGFD----VSVWDGWSRNDSRYHKGECGRKWNGF 64
>gi|211731797|gb|ACJ10118.1| predicted P-loop ATPase [Bacteriophage APSE-3]
Length = 666
Score = 39.0 bits (89), Expect = 0.52, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 153 LSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVV--MAIHYETRGSAEGKEIV 210
L+++ N T ++R+ L ++ W+ + +A +TR E K +
Sbjct: 128 LTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFEDEAKTMW 187
Query: 211 REWCKLGRTYDEKSFNAKWDSF 232
+W D ++ AKW
Sbjct: 188 LDWSSAAAKGDIEAAEAKWAEL 209
>gi|284031274|ref|YP_003381205.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836]
gi|283810567|gb|ADB32406.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836]
Length = 307
Score = 39.0 bits (89), Expect = 0.53, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 42/148 (28%), Gaps = 6/148 (4%)
Query: 2 VATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPI-SRVGQAP 60
VA V+ + G+ + + DVD + + + R G
Sbjct: 69 VAAIVNAVPGGQLAVRTGMVSGLLV-VDVDPAHGGWESLSELVARQLVPRTLWVRTGSDG 127
Query: 61 KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAY-NIHPKTQRAYTWSIAPHALKV 119
L +R L + ++ A G V +IH +T+R Y W
Sbjct: 128 AHLY-YR--HPGLHMPSRPMPNRPGIDVKADGGYVVLPPSIHHRTRRPYAWGTGSDLADP 184
Query: 120 EELPLLTPDEVEYFFEFFDTITTPRDKE 147
+ + P + +T
Sbjct: 185 AAVVEMPPPLIAACLPATPAESTHAPSA 212
>gi|9633552|ref|NP_050964.1| hypothetical protein APSE-1_03 [Acyrthosiphon pisum bacteriophage
APSE-1]
gi|6118000|gb|AAF03948.1|AF157835_3 P3 [Endosymbiont phage APSE-1]
Length = 752
Score = 39.0 bits (89), Expect = 0.56, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 153 LSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVV--MAIHYETRGSAEGKEIV 210
L+++ N T ++R+ L ++ W+ + +A +TR E K +
Sbjct: 219 LTRLVDLQNINDQTFEDLRSALWYPKILNRAENYPSWVDMGNRLAWFKDTRFEDEAKTMW 278
Query: 211 REWCKLGRTYDEKSFNAKWDSF 232
+W D ++ AKW
Sbjct: 279 LDWSSAAAKGDIEAAEAKWAEL 300
>gi|212546447|ref|XP_002153377.1| tubulin-specific chaperone c, putative [Penicillium marneffei ATCC
18224]
gi|210064897|gb|EEA18992.1| tubulin-specific chaperone c, putative [Penicillium marneffei ATCC
18224]
Length = 403
Score = 38.7 bits (88), Expect = 0.65, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 47/163 (28%), Gaps = 16/163 (9%)
Query: 1 MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP 60
+ D Y GI + + D+++ Q + + + P
Sbjct: 54 VAGERSDATDYCLAGIARLSNEVKDASSYIPTYDQRIYAEAIKALQDKLSETRATI--QP 111
Query: 61 KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQR--------AYTWSI 112
+ F+ KK S + E A G++ V + P T S
Sbjct: 112 RAKFSFKT-----KKNSSALSLSDAAEIAAQGRRIVPGYLSPDTSSVSSSRNLTPLYAST 166
Query: 113 APHALKVEEL-PLLTPDEVEYFFEFFDTITTPRDKEKSYRKLS 154
+ ++ +L P + P F + K R+ S
Sbjct: 167 PVNDIETPQLRPEIAPTSSATFLDEGKDSAALEKKSNDIRRPS 209
>gi|221195525|ref|ZP_03568580.1| RecA-family ATPase [Atopobium rimae ATCC 49626]
gi|221184712|gb|EEE17104.1| RecA-family ATPase [Atopobium rimae ATCC 49626]
Length = 727
Score = 38.7 bits (88), Expect = 0.66, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGR-TYDEKSFNAKWDSF 232
S+ EW+ MA+H S + EW + Y E KW SF
Sbjct: 20 LSYQEWVDCGMALHE----SGFTWQDWDEWSRQDSARYHEGECERKWKSF 65
>gi|315442842|ref|YP_004075721.1| bifunctional DNA primase/polymerase famiily protein [Mycobacterium
sp. Spyr1]
gi|315261145|gb|ADT97886.1| bifunctional DNA primase/polymerase famiily protein [Mycobacterium
sp. Spyr1]
Length = 353
Score = 38.7 bits (88), Expect = 0.69, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 34/124 (27%), Gaps = 21/124 (16%)
Query: 8 HYVYNGFGILCGIGTHPVYAFDVDV---LDEQVVDRFNNEFQSCCGKPISRVGQ-----A 59
Y + G G + DVD DE + + G+ G+
Sbjct: 104 RYAGHNIG---GRVPANIVVVDVDPRSGGDESLAA-----LERQHGRMPDAFGEISGRGD 155
Query: 60 PKTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAY-NIHPKTQRAYTWSIAPHALK 118
FR S +G ++ + V +IHP T R Y P
Sbjct: 156 GGRHYWFRA---PAGPLSSSRLGRG-IDIKTHSGYVVLPPSIHPDTGRPYEKVDGPITPP 211
Query: 119 VEEL 122
L
Sbjct: 212 PAWL 215
>gi|220930664|ref|YP_002507573.1| primase [Clostridium cellulolyticum H10]
gi|220000992|gb|ACL77593.1| Primase 2 [Clostridium cellulolyticum H10]
Length = 741
Score = 38.7 bits (88), Expect = 0.72, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRT-YDEKSFNAKWDSF 232
+ EW+ V MA+ + +A+ W + Y KWD+F
Sbjct: 20 LDYQEWLSVGMALKEDGYTAAD----WDTWSRQDTKRYHSGECFKKWDTF 65
>gi|159146228|gb|ABW90577.1| virulence-associated protein [Bacteriophage APSE-2]
Length = 385
Score = 38.3 bits (87), Expect = 0.78, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 153 LSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVV--MAIHYETRGSAEGKEIV 210
L+++ N T ++R+ L ++ W+ + +A +TR E K +
Sbjct: 191 LTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFEDEAKTMW 250
Query: 211 REWCKLGRTYDEKSFNAKWDSF 232
+W D ++ AKW
Sbjct: 251 LDWSSAAAKGDIEAAEAKWAEL 272
>gi|159146232|gb|ABW90579.1| virulence-associated protein [Bacteriophage APSE-2]
Length = 385
Score = 38.3 bits (87), Expect = 0.83, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 153 LSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVV--MAIHYETRGSAEGKEIV 210
L+++ N T ++R+ L ++ W+ + +A +TR E K +
Sbjct: 191 LTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFEDEAKTMW 250
Query: 211 REWCKLGRTYDEKSFNAKWDSF 232
+W D ++ AKW
Sbjct: 251 LDWSSAAAKGDIEAAEAKWAEL 272
>gi|82800076|gb|ABB92287.1| putative D5 family NTPase/ATPase [Tiger frog virus]
Length = 975
Score = 38.3 bits (87), Expect = 0.85, Method: Composition-based stats.
Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 5/110 (4%)
Query: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
+ P V ++ + R+ W + + + + + +
Sbjct: 260 DFTAANPGRVTRLADYSAVMAKLDVA----RQRKPAWNTDTTKAHRLKRVTELTAMLTAD 315
Query: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWD 230
+ W+ V + +T GSAEG ++ + K DE W+
Sbjct: 316 LAD-DRQTWLNVGFCLWQQTSGSAEGYKVWLSFSKKSDKCDEDECWTIWN 364
>gi|237735523|ref|ZP_04566004.1| recA-family ATPase [Mollicutes bacterium D7]
gi|229381268|gb|EEO31359.1| recA-family ATPase [Coprobacillus sp. D7]
Length = 738
Score = 38.3 bits (87), Expect = 0.86, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRT-YDEKSFNAKWDSF 232
++ EW V MA+ YE W + Y +K KWD+F
Sbjct: 19 LNYQEWCCVGMALKYE----GYSVSEWDSWSRRDSKRYHDKECLKKWDTF 64
>gi|159146222|gb|ABW90574.1| virulence-associated protein [Bacteriophage APSE-2]
gi|159146224|gb|ABW90575.1| virulence-associated protein [Bacteriophage APSE-2]
gi|159146226|gb|ABW90576.1| virulence-associated protein [Bacteriophage APSE-2]
Length = 385
Score = 38.3 bits (87), Expect = 0.86, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 153 LSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVV--MAIHYETRGSAEGKEIV 210
L+++ N T ++R+ L ++ W+ + +A +TR E K +
Sbjct: 191 LTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFEDEAKTMW 250
Query: 211 REWCKLGRTYDEKSFNAKWDSF 232
+W D ++ AKW
Sbjct: 251 LDWSSAAAKGDIEAAEAKWAEL 272
>gi|239905658|ref|YP_002952397.1| hypothetical protein DMR_10200 [Desulfovibrio magneticus RS-1]
gi|239795522|dbj|BAH74511.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 677
Score = 38.3 bits (87), Expect = 0.88, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 18/147 (12%)
Query: 14 FGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQETNL 73
G+ CG + + DVD + + N + + G + + Q N
Sbjct: 81 AGVACGPASGVLV-LDVDDMGKFREWLAANVGEELPATLTVKTGGIGERYHFY-FQYPND 138
Query: 74 KKQKSEEKIQGHLEFLAYGQQFVAYN-IHPKTQRAYTWSIAPHALKVEE----------- 121
++ ++ + G + + +HP+T++ Y +P L
Sbjct: 139 GQRYPNRSVKDVFDIRGVGGEVLCPGSLHPETRKPYIIVESPENLAPAPDWLRNYSLYRT 198
Query: 122 ----LPLLTPDEVEYFFEFFDTITTPR 144
P+ T D ++ + F T TP+
Sbjct: 199 IKPLAPVSTSDAHDHTQDQFMTPNTPQ 225
>gi|83591895|ref|YP_425647.1| formyltetrahydrofolate deformylase [Rhodospirillum rubrum ATCC
11170]
gi|83574809|gb|ABC21360.1| formyltetrahydrofolate deformylase [Rhodospirillum rubrum ATCC
11170]
Length = 297
Score = 38.3 bits (87), Expect = 0.96, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 48/144 (33%), Gaps = 15/144 (10%)
Query: 82 IQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLT---PDEVEYFFEFFD 138
Q H+E A + H R W H + LP+ T + E + D
Sbjct: 124 GQLHVEIPA------IVSNHKDLARLAEW----HGIPFHHLPVTTGGKEAQEEAILKVID 173
Query: 139 TITTPRDKEKSYRKLSKI-WKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPV-VMAI 196
+ Y ++ S + R NI S G + Y+ +H + +
Sbjct: 174 DSSADLVVLARYMQILSPAMSSALSGRCINIHHSFLPSFKGAKPYHQAHARGVKIIGATA 233
Query: 197 HYETRGSAEGKEIVREWCKLGRTY 220
HY T EG I +E ++ Y
Sbjct: 234 HYVTDALDEGPIIEQEVARVDHKY 257
>gi|33865758|ref|NP_897317.1| ribonuclease II [Synechococcus sp. WH 8102]
gi|33632928|emb|CAE07739.1| probable ribonuclease II [Synechococcus sp. WH 8102]
Length = 682
Score = 38.3 bits (87), Expect = 0.97, Method: Composition-based stats.
Identities = 24/183 (13%), Positives = 56/183 (30%), Gaps = 13/183 (7%)
Query: 19 GIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQETNLKKQK- 77
G ++ V+D +E G ++ +G+ + +R Q
Sbjct: 452 GRFRRGAAGPELQVIDPSPARVMVSEAMLLMGAAVAEIGRREGMALPYRSQPPAELPSAQ 511
Query: 78 -------SEEKIQGHLEFLAYGQQFVAYNIHPKTQ-RAYTWSIAPHALKVEELPLLTPDE 129
+ L+ G Q + H AY + +P + LL +
Sbjct: 512 ELAEIPEGPARDAAVKRCLSRGLQGTSPMPHFSLGLEAYVQATSPIRRYAD---LLAHRQ 568
Query: 130 VEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRA-FLSCFGEEFYNGSHDE 188
+ + E ++ P +E+ + +S R + +L ++ ++
Sbjct: 569 LIAWIEQRSVMSEPLLREQLDSLEDPLRQSIQISREDQRHWQQVWLEQHRDQQWSVQFLR 628
Query: 189 WIP 191
W+
Sbjct: 629 WLR 631
>gi|302544509|ref|ZP_07296851.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
53653]
gi|302462127|gb|EFL25220.1| putative integral membrane protein [Streptomyces himastatinicus
ATCC 53653]
Length = 345
Score = 37.9 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 57 GQAPKTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHA 116
G P + ++R E + K + Q +++ + A +HPKT R Y S +
Sbjct: 116 GTWPH-VWIYRFPEPKVLKNTTVTATQFTVKYEGGARNAEAMMVHPKTGRVYIASKSDDD 174
Query: 117 LKVEELPL 124
+ E P
Sbjct: 175 PGLYEAPA 182
>gi|312868644|ref|ZP_07728838.1| primase C-terminal domain protein [Lactobacillus oris PB013-T2-3]
gi|311095853|gb|EFQ54103.1| primase C-terminal domain protein [Lactobacillus oris PB013-T2-3]
Length = 750
Score = 37.9 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 185 SHDEWIPVVMAIHYETRGSAEGKEIVREWCKL-GRTYDEKSFNAKWDSF 232
S+ EW V MA+ +E +W + G Y KW +F
Sbjct: 20 SYAEWAQVGMALKHE----GYSVSDWDQWSQRDGDRYHAGECERKWRTF 64
>gi|261363790|ref|ZP_05976673.1| inner membrane protein [Neisseria mucosa ATCC 25996]
gi|288568370|gb|EFC89930.1| inner membrane protein [Neisseria mucosa ATCC 25996]
Length = 805
Score = 37.9 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 185 SHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDS 231
D W+ ++ +E E ++ W + +Y + + W S
Sbjct: 18 DRDVWVNTAYSLKHEL--GEEAFDMWDRWSQQSDSYRSRDARSVWKS 62
>gi|225734507|gb|ACO25275.1| D5 family NTPase [Epizootic haematopoietic necrosis virus]
Length = 973
Score = 37.9 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 42/148 (28%), Gaps = 16/148 (10%)
Query: 96 VAYNIHPKTQRAYTWSIAPHALKVEELPL-LTPDEVEYFFEFFD-------TITTPRDKE 147
A+ + +W E + L + P FF +D +T D
Sbjct: 220 TAFG---DVETPPSWGRPTSDRHREAMVLSIHPAGRSVFFRRYDFTAANPGRVTRLADYS 276
Query: 148 KSYRKLSKIWKSHNNRRYTNIEIRAF-----LSCFGEEFYNGSHDEWIPVVMAIHYETRG 202
KL + E L+ W+ V + +T G
Sbjct: 277 AVMAKLDVARQRKPAWNTDATEAHRLKRVTELTVMLTADLADDRQTWLNVGFCLWQQTSG 336
Query: 203 SAEGKEIVREWCKLGRTYDEKSFNAKWD 230
SAEG ++ + K DE W+
Sbjct: 337 SAEGYKVWLSFSKKSDKCDEDECWTIWN 364
>gi|288904658|ref|YP_003429879.1| hypothetical protein GALLO_0442 [Streptococcus gallolyticus UCN34]
gi|288731383|emb|CBI12934.1| hypothetical protein, phage associated [Streptococcus gallolyticus
UCN34]
Length = 757
Score = 37.5 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 185 SHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
+ W + MA+ +E + + W + Y + KW +F+
Sbjct: 21 DYSTWCQIGMALKHEGYTAMD----WDNWSQADTRYKKGECFKKWTTFN 65
>gi|307546785|ref|YP_003899264.1| hypothetical protein HELO_4195 [Halomonas elongata DSM 2581]
gi|307218809|emb|CBV44079.1| hypothetical protein HELO_4195 [Halomonas elongata DSM 2581]
Length = 345
Score = 37.5 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
+ W+ V A E +G EW + +Y + W S
Sbjct: 21 DDRETWVNVGNACKTEY--GDDGFAAWDEWSQQAESYKAADAKSVWRSL 67
>gi|212499708|ref|YP_002308516.1| predicted P-loop ATPase [Bacteriophage APSE-2]
gi|238898740|ref|YP_002924422.1| APSE-2 prophage; predicted P-loop ATPase [Bacteriophage APSE-2]
gi|211731677|gb|ACJ10165.1| predicted P-loop ATPase [Bacteriophage APSE-2]
gi|229466500|gb|ACQ68274.1| APSE-2 prophage; predicted P-loop ATPase [Bacteriophage APSE-2]
Length = 745
Score = 37.5 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 153 LSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVV--MAIHYETRGSAEGKEIV 210
L+++ N T ++R+ L ++ W+ + +A +T E K +
Sbjct: 213 LTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTHFEDEAKTMW 272
Query: 211 REWCKLGRTYDEKSFNAKWDSF 232
+W D ++ AKW
Sbjct: 273 LDWSSAAAKGDIEAAEAKWAEL 294
>gi|294789713|ref|ZP_06754945.1| primase C 2 (PriCT-2) superfamily [Simonsiella muelleri ATCC 29453]
gi|294482350|gb|EFG30045.1| primase C 2 (PriCT-2) superfamily [Simonsiella muelleri ATCC 29453]
Length = 987
Score = 37.5 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 185 SHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDS 231
+ W + AI E G E+ W + Y ++ + W S
Sbjct: 18 DRETWFRMGAAIKDEL--GENGFEMWDNWSRQSDNYKQQDAQSVWKS 62
>gi|211731726|gb|ACJ10075.1| predicted P-loop ATPase [Bacteriophage APSE-5]
Length = 654
Score = 37.1 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 153 LSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVV--MAIHYETRGSAEGKEIV 210
L+++ N T ++R+ L ++ W+ + +A +T E K +
Sbjct: 122 LTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTHFEDEAKTMW 181
Query: 211 REWCKLGRTYDEKSFNAKWDSF 232
+W D ++ AKW
Sbjct: 182 LDWSSAAAKGDIEAAEAKWAEL 203
>gi|211731774|gb|ACJ10104.1| predicted P-loop ATPase [Bacteriophage APSE-7]
Length = 654
Score = 37.1 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 153 LSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVV--MAIHYETRGSAEGKEIV 210
L+++ N T ++R+ L ++ W+ + +A +T E K +
Sbjct: 122 LTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTHFEDEAKTMW 181
Query: 211 REWCKLGRTYDEKSFNAKWDSF 232
+W D ++ AKW
Sbjct: 182 LDWSSAAAKGDIEAAEAKWAEL 203
>gi|297200823|ref|ZP_06918220.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Streptomyces
sviceus ATCC 29083]
gi|297147743|gb|EFH28715.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Streptomyces
sviceus ATCC 29083]
Length = 264
Score = 37.1 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 17/115 (14%), Positives = 27/115 (23%), Gaps = 13/115 (11%)
Query: 13 GFGILCGIGTHPVYAFDVDVLD-EQVVDRFNNEFQSCCGKPISRV-------GQAPKTLM 64
G+GI CG+ H + D+D V G+ L
Sbjct: 84 GYGIACGLPPHHLIGVDLDTKSGTDSSAALRELALRHLFTIPDTVVVLTPSGGR---HLW 140
Query: 65 LFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKV 119
L + S ++ ++ G V T H
Sbjct: 141 L--TGPPDAAVPNSAGRLAPGIDIRGAGGYLVGPGSRTDHGTYTTAPGTAHLAPA 193
>gi|260429685|ref|ZP_05783661.1| conserved hypothetical protein [Citreicella sp. SE45]
gi|260419168|gb|EEX12422.1| conserved hypothetical protein [Citreicella sp. SE45]
Length = 517
Score = 37.1 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 204 AEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
EG + EW + + W SF
Sbjct: 9 EEGATLFAEWSGQAAKNNPAATAKAWASF 37
>gi|45686089|ref|YP_003852.1| D5 family NTPase [Ambystoma tigrinum virus]
gi|37722513|gb|AAP33258.1| D5 family NTPase [Ambystoma tigrinum stebbensi virus]
Length = 975
Score = 37.1 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 5/110 (4%)
Query: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
+ P V ++ + R+ W + + + + +
Sbjct: 260 DFTAANPGRVTRLADYSAVMAKLDVA----RQRKPAWNIDATKAHRLKRVTELTAMLTAD 315
Query: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWD 230
+ W+ V + +T GSAEG ++ + K DE W+
Sbjct: 316 LAD-DRQTWLNVGFCLWQQTSGSAEGYKVWLSFSKKSDKCDEDECWTIWN 364
>gi|237653460|ref|YP_002889774.1| P4 family phage/plasmid primase [Thauera sp. MZ1T]
gi|237624707|gb|ACR01397.1| phage/plasmid primase, P4 family [Thauera sp. MZ1T]
Length = 782
Score = 37.1 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 160 HNNRRYTNIEIRAFLSCFGEEFYNG-SHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGR 218
R +R+ + G + D ++ V+ + G +E+ REWC
Sbjct: 225 EPETRENVERLRSAAAAIPSSKAKGCTRDIYLTVLWG--FAATGWNCAEELAREWCMTSP 282
Query: 219 -TYDEKSFNAKWDSFD 233
+DE F W S+D
Sbjct: 283 EDFDEDDFGKDWRSYD 298
>gi|159146230|gb|ABW90578.1| virulence-associated protein [Bacteriophage APSE-2]
Length = 378
Score = 36.7 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 153 LSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVV--MAIHYETRGSAEGKEIV 210
L+++ N T ++R+ L ++ W+ + +A +T E K +
Sbjct: 185 LTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTHFEDEAKTMW 244
Query: 211 REWCKLGRTYDEKSFNAKWDSF 232
+W D ++ AKW
Sbjct: 245 LDWSSAAAKGDIEAAEAKWAEL 266
>gi|15805557|ref|NP_294253.1| hypothetical protein DR_0530 [Deinococcus radiodurans R1]
gi|6458224|gb|AAF10112.1|AE001911_7 hypothetical protein DR_0530 [Deinococcus radiodurans R1]
Length = 891
Score = 36.7 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 36/125 (28%), Gaps = 27/125 (21%)
Query: 11 YNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQ--SCCGKPISRV----GQAPKTLM 64
+ G G+ A D+D D + + RV G+ P
Sbjct: 57 HPGAGVGLLHSESQTAALDID-HDGAALALAAVGVDLAAVLASNPYRVRGKKGEKP---- 111
Query: 65 LFRMQE-----------TNLKKQKSEEKIQGHLEFLAYG-----QQFVAYNIHPKTQRAY 108
+FR+ + + +K L Q + ++HP T R Y
Sbjct: 112 IFRVPDGLSLNRHALSWPDPSGKKGPGGRPAPLTIFELRGGAGVQDVMPPSVHPDTGRPY 171
Query: 109 TWSIA 113
W+
Sbjct: 172 EWTGP 176
>gi|319442985|ref|ZP_07992141.1| putative FtsK/SpoIIIE family protein [Corynebacterium variabile DSM
44702]
Length = 445
Score = 36.7 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 32/92 (34%)
Query: 114 PHALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAF 173
P + E+L + + T+ P + + + + + ++
Sbjct: 122 PVDVPPEDLEPVCAMSLRDLATRHATLDAPVAVDLREFPVVAVTGPGASDQVRAMQGALV 181
Query: 174 LSCFGEEFYNGSHDEWIPVVMAIHYETRGSAE 205
L G +G HD W+P A+ R SAE
Sbjct: 182 LQDPGVVGIDGPHDRWLPHDGALRISFRYSAE 213
>gi|159146220|gb|ABW90573.1| virulence-associated protein [Bacteriophage APSE-2]
Length = 378
Score = 36.7 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 153 LSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVV--MAIHYETRGSAEGKEIV 210
L+++ N T ++R+ L ++ W+ + +A +T E K +
Sbjct: 185 LTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTHFEDEAKTMW 244
Query: 211 REWCKLGRTYDEKSFNAKWDSF 232
+W D ++ AKW
Sbjct: 245 LDWSSAAAKGDIEAAEAKWAEL 266
>gi|289644930|ref|ZP_06476972.1| Bifunctional DNA primase/polymerase [Frankia symbiont of Datisca
glomerata]
gi|289505239|gb|EFD26296.1| Bifunctional DNA primase/polymerase [Frankia symbiont of Datisca
glomerata]
Length = 212
Score = 36.7 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 33/122 (27%), Gaps = 12/122 (9%)
Query: 6 VDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLML 65
+ + G + + D+D R + P + V L
Sbjct: 72 LTTIPAGLLAVRTGAVSG-LVVVDID---PGHGGRLDRTLM----TPTATVATGGGGWHL 123
Query: 66 FRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAY-NIHPKTQRAYTW--SIAPHALKVEEL 122
+ Q ++ A G A + HP T R Y W + + + L
Sbjct: 124 Y-YQHPGTPVLSRPLPGHVGIDIKADGGYVTAPPSTHPTTGRPYQWVGTRPVNEMPPALL 182
Query: 123 PL 124
L
Sbjct: 183 TL 184
>gi|159036858|ref|YP_001536111.1| bifunctional DNA primase/polymerase [Salinispora arenicola CNS-205]
gi|157915693|gb|ABV97120.1| Bifunctional DNA primase/polymerase [Salinispora arenicola CNS-205]
Length = 290
Score = 36.3 bits (82), Expect = 3.1, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 8/123 (6%)
Query: 2 VATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPK 61
+ +D + G V DVD + + + +
Sbjct: 64 ITAMIDTAPRGQLALRTGR-ASDVVVLDVDPRNGGHRGLATLVADGLAPRTAYVITGSDG 122
Query: 62 TLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAY-NIHPKTQRAYTWSIAPHALKVE 120
+ +R T L K ++ G V +IH +T R Y W+ V+
Sbjct: 123 LHLFYRHPGTPLA-AKVPGVPG--VDIKTDGGYVVLPPSIHQRTGRPYRWA---DRGPVQ 176
Query: 121 ELP 123
E+P
Sbjct: 177 EMP 179
>gi|329938729|ref|ZP_08288125.1| hypothetical protein SGM_3617 [Streptomyces griseoaurantiacus M045]
gi|329302220|gb|EGG46112.1| hypothetical protein SGM_3617 [Streptomyces griseoaurantiacus M045]
Length = 341
Score = 36.3 bits (82), Expect = 3.1, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 44/167 (26%), Gaps = 12/167 (7%)
Query: 13 GFGILCGIGTHPVYAFDVDVL---DEQVVDRFNNEFQSCCGKPISRVGQAP---KTLMLF 66
G+GI CG+ H + D+D D R + P + V P + L L
Sbjct: 109 GYGIACGLPPHHLIGVDLDTKSGTDSTTALR-ELALRHLFTIPPTVVVVTPSGGRHLWL- 166
Query: 67 RMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLT 126
++ S ++ ++ G V + AP A + P T
Sbjct: 167 -TGPPDVVVPNSASRLAPGIDIRGAGGYLVGPGSRTDHG---VYETAPGAAHLSPAPCPT 222
Query: 127 PDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAF 173
P R + + + +
Sbjct: 223 PLLRLLLPPPRHARVGLRGTAAGTGREPGHGTGSRTGSHPDDALARA 269
>gi|296135617|ref|YP_003642859.1| Primase 2 [Thiomonas intermedia K12]
gi|295795739|gb|ADG30529.1| Primase 2 [Thiomonas intermedia K12]
Length = 751
Score = 36.0 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 9/72 (12%)
Query: 162 NRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYD 221
N T A + + ++W MA + + E +W G Y
Sbjct: 3 NGHDTERARAALQAIPP----DLPREDWTRAGMA----AKAAGLALEDFTDWSANGGNYA 54
Query: 222 -EKSFNAKWDSF 232
K + W SF
Sbjct: 55 GPKDCASVWQSF 66
>gi|325288511|ref|YP_004264692.1| Primase 2 [Syntrophobotulus glycolicus DSM 8271]
gi|324963912|gb|ADY54691.1| Primase 2 [Syntrophobotulus glycolicus DSM 8271]
Length = 748
Score = 36.0 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 179 EEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLG-RTYDEKSFNAKWDSF 232
+ + W+ V MA+ +A+ EW + Y KWDSF
Sbjct: 14 IDPAQLDYATWLSVGMALKEAGYTAAD----WDEWSRRDIGRYHAGECFRKWDSF 64
>gi|302544086|ref|ZP_07296428.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
hygroscopicus ATCC 53653]
gi|302461704|gb|EFL24797.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
himastatinicus ATCC 53653]
Length = 303
Score = 36.0 bits (81), Expect = 4.1, Method: Composition-based stats.
Identities = 40/226 (17%), Positives = 61/226 (26%), Gaps = 31/226 (13%)
Query: 13 GFGILCGIGTHPVYAFDVDVLDE----QVVDRFNNEFQSCCGKPISRVGQAP---KTLML 65
G+GI CG H + D+D+ E + P + P + L L
Sbjct: 82 GYGIACGCAPHHLIGVDLDLKHEPRVDGAAALARLARRYAFAVPHTVTVLTPGGGRHLWL 141
Query: 66 FRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIA----PHALKVEE 121
L S +I ++ G V R + P + E
Sbjct: 142 --CGPPGLGVPNSAGRIAPGIDIRGTGGYLVGPGSATSRGRYRLAPGSPAWHPAPVPPEL 199
Query: 122 LPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRY--TNIEIRA-----FL 174
L L+ P T P + + R+ + E R +
Sbjct: 200 LSLVQP----------PVRTPPERATARPSAVGAPGRDAALVRFVRESQEGRRNDRLFWA 249
Query: 175 SCFGEEFYNGSHDEWIPVVMAIHYE-TRGSAEGKEIVREWCKLGRT 219
+C E G + A+H TR AE G T
Sbjct: 250 ACRAYEAGAGDELAPALIEAALHTGLTRREAEATVASAARSATGST 295
>gi|281348052|gb|EFB23636.1| hypothetical protein PANDA_018113 [Ailuropoda melanoleuca]
Length = 266
Score = 36.0 bits (81), Expect = 4.1, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 8/111 (7%)
Query: 87 EFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTPDEVEYFFEFFDTITTPRDK 146
E Q+F+ T R TW P + + LP P +
Sbjct: 160 ELEGQLQRFMQMG---STGRPRTWEQGP-SARASLLPSEGPGPPARILGRHTKMVALA-- 213
Query: 147 EKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIH 197
+ + + YT+ E ++ G+ D+WI A+
Sbjct: 214 -QGAYGPYSPNECISLPVYTSAERDRVVANIDV-PCGGNQDQWIQCGAALF 262
>gi|144901028|emb|CAM77892.1| transcriptional activator [Magnetospirillum gryphiswaldense MSR-1]
Length = 234
Score = 36.0 bits (81), Expect = 4.1, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Query: 30 VDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQETNLKKQKSEEKIQGHLEFL 89
+D + + + G + G K L + + L + + +E L
Sbjct: 22 IDAPTLTRMAQVARVVRLPRGTVLFSQGDEAKALYVLLEGQIGLSGKVEDLGDDTVVEIL 81
Query: 90 AYGQQFVAYNIHPKTQRAYTWSIAPH-ALKVEELP 123
G+ FVA + T + Y + +V ELP
Sbjct: 82 DAGEAFVAAAV--LTGKPYLIAATALAPARVLELP 114
>gi|182437403|ref|YP_001825122.1| hypothetical protein SGR_3610 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178465919|dbj|BAG20439.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 319
Score = 36.0 bits (81), Expect = 4.3, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 34/127 (26%), Gaps = 15/127 (11%)
Query: 13 GFGILCGIGTHPVYAFDVDVLDE----QVVDRFNNEFQSCCGKPISRVG----QAPKTLM 64
G+GI CG H + D+D+ D V + L
Sbjct: 85 GYGIACGRAPHRLIGVDLDI-DPSYGSDAAGALRQLGLQHLFTIPPTVTVLTPSGGRHLW 143
Query: 65 LFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQR----AYTWSIAPHALKVE 120
L + S ++ ++ G V R T + P
Sbjct: 144 L--TGPADATVPNSAGRLAPGIDIRGSGGYLVGPGSVTTHGRYRLAPGTAHLTPAPCPRA 201
Query: 121 ELPLLTP 127
L LLTP
Sbjct: 202 LLRLLTP 208
>gi|167908939|ref|ZP_02496030.1| hypothetical protein Bpse112_00480 [Burkholderia pseudomallei 112]
Length = 232
Score = 36.0 bits (81), Expect = 4.3, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 194 MAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
MA+ E EG + EW + + Y+ K W SF
Sbjct: 1 MALKAEF--GEEGFTLWNEWSQGAQNYNGKDARDVWKSF 37
>gi|302343670|ref|YP_003808199.1| Bifunctional DNA primase/polymerase [Desulfarculus baarsii DSM
2075]
gi|301640283|gb|ADK85605.1| Bifunctional DNA primase/polymerase [Desulfarculus baarsii DSM
2075]
Length = 626
Score = 36.0 bits (81), Expect = 4.4, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 51/174 (29%), Gaps = 22/174 (12%)
Query: 10 VYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQ 69
GI+ G ++ + +D + + + R P + P+ +
Sbjct: 48 PGAMVGIVTGKVSNLLV---IDADNSEAISRVEALLPDGLEMP---IATTPRGRHYYFAH 101
Query: 70 ETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTPDE 129
K+ + ++ A G VA P R W +AP ELP D
Sbjct: 102 REG---MKNAVGVMPAVDVRAEGGYVVAP---PGPGR--EWLVAPWDCAPPELPAQLEDV 153
Query: 130 VEYFFEFFDTIT------TPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCF 177
V + + P + R+ K + RY + L+
Sbjct: 154 VRARAKERQIASLKQGDVAPDPVRANLREREK--GRDSRSRYGRHALADELTKI 205
>gi|56421232|ref|YP_148550.1| ribonuclease HIII [Geobacillus kaustophilus HTA426]
gi|81346706|sp|Q5KWF4|RNH3_GEOKA RecName: Full=Ribonuclease HIII; Short=RNase HIII
gi|56381074|dbj|BAD76982.1| ribonuclease HIII (RNase HIII) [Geobacillus kaustophilus HTA426]
Length = 311
Score = 36.0 bits (81), Expect = 4.4, Method: Composition-based stats.
Identities = 24/180 (13%), Positives = 57/180 (31%), Gaps = 16/180 (8%)
Query: 22 THPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQETNLKKQKSEEK 81
++ V D +LD + + V + + +R + + + +E++
Sbjct: 2 SNYVIQADQQLLDALRAHYQDALSDRLPAGALFAVKRPDVVITAYRSGKVLFQGKAAEQE 61
Query: 82 IQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPLLTPDEVEYFFEFFDTIT 141
G+ V P ++ + P ++E+L + DEV F +
Sbjct: 62 A---------GKWMVKRGADPGKRQERETASPPLEHRLEKLSAIGSDEVGTGDYFGPIVV 112
Query: 142 TPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFY-------NGSHDEWIPVVM 194
++S+ ++++ T+ I E N ++ W M
Sbjct: 113 AAAYVDRSHIAKIAALGVKDSKQLTDEAIHKIAPAIMETAPYAVTVLDNAEYNRWQRSGM 172
>gi|256380816|ref|YP_003104476.1| urea amidolyase related protein [Actinosynnema mirum DSM 43827]
gi|255925119|gb|ACU40630.1| urea amidolyase related protein [Actinosynnema mirum DSM 43827]
Length = 285
Score = 36.0 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 12/69 (17%)
Query: 37 VVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFV 96
V DR N G + R G A + SE + G ++ A G+ V
Sbjct: 198 VSDRSNRVGLRLTGTALRRTGGATGRELP------------SEGLVTGAVQVPADGRPVV 245
Query: 97 AYNIHPKTQ 105
HP T
Sbjct: 246 FLADHPTTG 254
>gi|326778039|ref|ZP_08237304.1| Bifunctional DNA primase/polymerase [Streptomyces cf. griseus
XylebKG-1]
gi|326658372|gb|EGE43218.1| Bifunctional DNA primase/polymerase [Streptomyces cf. griseus
XylebKG-1]
Length = 319
Score = 36.0 bits (81), Expect = 4.7, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 34/127 (26%), Gaps = 15/127 (11%)
Query: 13 GFGILCGIGTHPVYAFDVDVLDE----QVVDRFNNEFQSCCGKPISRVG----QAPKTLM 64
G+GI CG H + D+D+ D V + L
Sbjct: 85 GYGIACGRAPHRLIGVDLDI-DPSYGSDAAGALRQLGLQHLFTIPPTVTVLTPSGGRHLW 143
Query: 65 LFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQR----AYTWSIAPHALKVE 120
L + S ++ ++ G V R T + P
Sbjct: 144 L--TGPADATVPNSAGRLAPGIDIRGSGGYLVGPGSVTTHGRYRLAPGTAHLTPAPCPRA 201
Query: 121 ELPLLTP 127
L LLTP
Sbjct: 202 LLRLLTP 208
>gi|159146234|gb|ABW90580.1| virulence-associated protein [Bacteriophage APSE-2]
Length = 378
Score = 36.0 bits (81), Expect = 4.9, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 153 LSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVV--MAIHYETRGSAEGKEIV 210
L+++ N T ++R+ L ++ W+ + +A +T E K +
Sbjct: 185 LTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWVKDTHFEDEAKTMW 244
Query: 211 REWCKLGRTYDEKSFNAKWDSF 232
+W D ++ AKW
Sbjct: 245 LDWSSAAAKGDIEAAEAKWAEL 266
>gi|239942767|ref|ZP_04694704.1| hypothetical protein SrosN15_17369 [Streptomyces roseosporus NRRL
15998]
gi|239989226|ref|ZP_04709890.1| hypothetical protein SrosN1_18136 [Streptomyces roseosporus NRRL
11379]
gi|291446237|ref|ZP_06585627.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291349184|gb|EFE76088.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 303
Score = 35.6 bits (80), Expect = 6.2, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 27/115 (23%), Gaps = 11/115 (9%)
Query: 13 GFGILCGIGTHPVYAFDVDVLDE----QVVDRFNNEFQSCCGKPISRVG----QAPKTLM 64
G+GI CG H + D+DV D V + L
Sbjct: 83 GYGIACGRAPHRLIGIDLDV-DPAYGSDAAGALRQLALQHLFTIPPTVTVLTPSGGRHLW 141
Query: 65 LFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKV 119
L + S ++ ++ G V R H
Sbjct: 142 L--TGPADATVPNSAGRLAPGIDIRGTGGYLVGPGSVTAHGRYRLAPGTAHLTPA 194
>gi|325525457|gb|EGD03275.1| inner membrane protein [Burkholderia sp. TJI49]
Length = 327
Score = 35.2 bits (79), Expect = 7.5, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 194 MAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSF 232
MA+ E EG + EW + + Y K W SF
Sbjct: 1 MALKAEF--GEEGFALWNEWSQGAQNYKGKDARDVWKSF 37
>gi|126727690|ref|ZP_01743522.1| Hypothetical prophage lsa1protein [Rhodobacterales bacterium
HTCC2150]
gi|126703106|gb|EBA02207.1| Hypothetical prophage lsa1protein [Rhodobacterales bacterium
HTCC2150]
Length = 184
Score = 35.2 bits (79), Expect = 7.8, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 8/117 (6%)
Query: 12 NGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEF--QSCCGKPISRV---GQAPKTLMLF 66
G GI+CGI + + D+D D D + ++ G + V Q+ + F
Sbjct: 58 PGIGIVCGIDSGLLV-IDIDTDDGHGADGPTSLAALEAKHGTLPATVEAKTQSGGRHLYF 116
Query: 67 RMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELP 123
R + + I ++ G FV T Y W +P+ ++ + P
Sbjct: 117 RYLDGP-QIGNGAGVIGPGIDHRGEGG-FVVAPPSQGTYGDYLWVRSPNDHEIADCP 171
>gi|186685031|ref|YP_001868227.1| ribonuclease II [Nostoc punctiforme PCC 73102]
gi|186467483|gb|ACC83284.1| ribonuclease II [Nostoc punctiforme PCC 73102]
Length = 686
Score = 35.2 bits (79), Expect = 8.3, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 8 HYVYNGFGILCGIGTHPVYA--FDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLML 65
Y I T V ++D+LD+ + E G+ +R G+A +
Sbjct: 433 RYAQGAISITMPEATIKVKGDEINIDILDDSPSRQVVAEMMIVAGEVAARYGKAHNIPLP 492
Query: 66 FR 67
FR
Sbjct: 493 FR 494
>gi|311743682|ref|ZP_07717488.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
gi|311312812|gb|EFQ82723.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
Length = 1564
Score = 34.8 bits (78), Expect = 8.6, Method: Composition-based stats.
Identities = 36/222 (16%), Positives = 66/222 (29%), Gaps = 33/222 (14%)
Query: 9 YVYNGFGILCGIGTHPVYAFDVDVL----DEQVVDRFNNEFQSCCGKPIS---------R 55
+ ++ + G V DVD ++ G
Sbjct: 59 HPHHSIALRMPDG---VIGIDVDQYVKKGKQKHGADTLAALVEKLGPLPPTWSSTARGDE 115
Query: 56 VGQAPKTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQ--FVAYNIHPKTQRAYTWSIA 113
G P ++LF++ + G +E + + VA +I+P+T Y W
Sbjct: 116 HGPGPSRVLLFQVPAQRYITNLTAAGT-GDIEIIQRHHRYIVVAPSINPETGTQYQWYDE 174
Query: 114 --------PHALKVEELPLL-TPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRR 164
P+ L++ ELP +E + P E +L W+
Sbjct: 175 TDQPSDKVPNPLQLAELPAAWLAHLLEGATSAGPSAADPASGEALLEQLLDDWRPECADI 234
Query: 165 YTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEG 206
Y L HD + +H+ + +A+G
Sbjct: 235 YGAR--LNALDTLATADAGSRHDT---MTARVHHLVQLAAQG 271
>gi|21222404|ref|NP_628183.1| hypothetical protein SCO4001 [Streptomyces coelicolor A3(2)]
gi|13122165|emb|CAC32341.1| hypothetical protein 2SC10A7.05c [Streptomyces coelicolor A3(2)]
Length = 291
Score = 34.8 bits (78), Expect = 9.2, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 32/111 (28%), Gaps = 19/111 (17%)
Query: 13 GFGILCGIGTHPVYAFDVDVLDE----QVVDRFNNEFQSCCGK-PISRVGQAP---KTLM 64
G+GI CG+ H + D+D P + V P + L
Sbjct: 85 GYGIACGLPPHHLIGVDLDTKSAAAQTDSATALRELALRHLFTIPPTVVVLTPSGGRHLW 144
Query: 65 LFRMQETNLKKQKSEEKIQGHLEFLAYGQQFV---------AYNIHPKTQR 106
L + S ++ ++ G V AY I P T
Sbjct: 145 L--TGPPDHVVPNSAGRLAPGIDIRGAGGYLVGPGSRTRHGAYTIAPGTSH 193
>gi|297193395|ref|ZP_06910793.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
25486]
gi|297151754|gb|EFH31333.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 315
Score = 34.8 bits (78), Expect = 9.4, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 37/129 (28%), Gaps = 21/129 (16%)
Query: 13 GFGILCGIGTHPVYAFDVDVLDE-QVVDRFNNEFQSCCGKPISRVG----QAPKTLMLFR 67
G+GI CG H + D+D + + V + L L
Sbjct: 109 GYGIACGRPPHHLIGIDLDTKSSTDSMAELQHLALRHLFTIPETVTVLTPSGGRHLWL-- 166
Query: 68 MQETNLKKQKSEEKIQGHLEFLAYGQQFV---------AYNIHPKTQRAYTWSIAPHALK 118
+ S ++ ++ G V AY I P T +AP
Sbjct: 167 TGPPDTVVPNSASRLAPGIDVRGTGGYLVGPGSVTAHGAYRIAPGTAH-----LAPAPCP 221
Query: 119 VEELPLLTP 127
L L+ P
Sbjct: 222 RALLRLIAP 230
>gi|206561307|ref|YP_002232072.1| hypothetical protein BCAL2966 [Burkholderia cenocepacia J2315]
gi|198037349|emb|CAR53279.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
Length = 934
Score = 34.8 bits (78), Expect = 9.5, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 170 IRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKW 229
+ A L+C + S + W + A+ +E G ++ W + Y W
Sbjct: 11 VEAALACIP---PDVSRETWYRIAAALKHEM--GDAGFDLFDGWSRGHDGYAASDARDTW 65
Query: 230 DSF 232
S
Sbjct: 66 RSL 68
>gi|325524458|gb|EGD02520.1| twin-arginine translocation pathway signal [Burkholderia sp. TJI49]
Length = 513
Score = 34.8 bits (78), Expect = 9.8, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 6/119 (5%)
Query: 105 QRAYTWSIAPHALKVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRR 164
R Y++ ++ + + + F D + R S R
Sbjct: 218 GRWYSFRVSSVLFISLDADDVVYQDAAAFVAGPD---PLVPAASTGRPPIAPGTSFYVRG 274
Query: 165 YTNIEIRAFLSCFGEEFYNGSHDEWIPVVM---AIHYETRGSAEGKEIVREWCKLGRTY 220
Y+N E +L + +WI V M A+ G+ K I W L Y
Sbjct: 275 YSNGEQTRWLEHTLRHAAHDDDIDWIVVQMHQDALSSSKTGNGSDKGIREAWLPLFDRY 333
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.307 0.121 0.326
Lambda K H
0.267 0.0370 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,938,006,838
Number of Sequences: 14124377
Number of extensions: 141102569
Number of successful extensions: 362618
Number of sequences better than 10.0: 301
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 242
Number of HSP's that attempted gapping in prelim test: 362266
Number of HSP's gapped (non-prelim): 365
length of query: 233
length of database: 4,842,793,630
effective HSP length: 135
effective length of query: 98
effective length of database: 2,936,002,735
effective search space: 287728268030
effective search space used: 287728268030
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 78 (34.8 bits)