RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781190|ref|YP_003065603.1| hypothetical protein
CLIBASIA_05485 [Candidatus Liberibacter asiaticus str. psy62]
         (233 letters)



>gnl|CDD|149686 pfam08707, PriCT_2, Primase C terminal 2 (PriCT-2).  This alpha
           helical domain is found at the C terminal of primases.
          Length = 74

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
             +D W+ V MA+ +E     EG E+  EW      YD      KWDSF 
Sbjct: 13  DDYDSWLRVGMALKHEF--GEEGLELWDEWSAKSSKYDPGECERKWDSFK 60


>gnl|CDD|182335 PRK10252, entF, enterobactin synthase subunit F; Provisional.
          Length = 1296

 Score = 30.0 bits (68), Expect = 0.55
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 85  HLEFLAYGQQFVAYNIHPKTQRAY---TWSIAPHALKVEELPLLTPDEVEYFFEFFDT 139
            +E LA  Q++    +    +R         A  AL   ++ +L P E     +   T
Sbjct: 394 SIEILANPQRYDEATLIAHAERLKALIAQFAADPALLCGDVDILLPGEYAQLAQVNAT 451


>gnl|CDD|181491 PRK08589, PRK08589, short chain dehydrogenase; Validated.
          Length = 272

 Score = 28.2 bits (63), Expect = 2.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 27 AFDVDVLDEQVVDRFNNEFQSCCGK 51
          A+ VD+ DEQ V  F +E +   G+
Sbjct: 58 AYHVDISDEQQVKDFASEIKEQFGR 82


>gnl|CDD|177893 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase.
          Length = 568

 Score = 27.8 bits (62), Expect = 2.5
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 4/32 (12%)

Query: 64  MLFRMQETNLKKQKSEEKIQGHLE----FLAY 91
           ML +M ET L+K+K E   +GH +    F  Y
Sbjct: 410 MLIQMVETELEKRKQEGSYKGHFKGQSHFFGY 441


>gnl|CDD|178779 PLN03241, PLN03241, magnesium chelatase subunit H; Provisional.
          Length = 1353

 Score = 27.5 bits (61), Expect = 2.9
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 77  KSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTW 110
           K E+K+ G+L FL  G   + +    K      W
Sbjct: 196 KEEDKLVGYLSFLKIGPALLKFVPGEKASDLRNW 229


>gnl|CDD|150725 pfam10083, DUF2321, Uncharacterized protein conserved in bacteria
           (DUF2321).  Members of this family of hypothetical
           bacterial proteins have no known function.
          Length = 158

 Score = 27.6 bits (61), Expect = 3.1
 Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 8/85 (9%)

Query: 70  ETNLKKQKSEEKIQGHL---EFLAYGQQFVAYNIHPKTQRAYTW---SIAPHALKVEELP 123
            T          I+G       L  G  + A +      + + W    +      +EE  
Sbjct: 37  ATITSCPHCSTPIRGFYYVDGVLGLGSDYDAPSYCHNCGKPFPWTKRKLEAANELIEEDD 96

Query: 124 LLTPDEVEYFFEFFDTIT--TPRDK 146
            L+PDE E F      +T  TPR K
Sbjct: 97  NLSPDEKEQFQADLPDLTVETPRTK 121


>gnl|CDD|179835 PRK04350, PRK04350, thymidine phosphorylase; Provisional.
          Length = 490

 Score = 26.7 bits (60), Expect = 5.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 162 NRRYTNIEIRAFLS 175
             RY++IE+ AFL+
Sbjct: 108 AGRYSDIELSAFLT 121


>gnl|CDD|180493 PRK06259, PRK06259, succinate dehydrogenase/fumarate reductase
           iron-sulfur subunit; Provisional.
          Length = 486

 Score = 26.5 bits (59), Expect = 6.5
 Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 10/31 (32%)

Query: 28  FDVDVLDEQVVDRFNNEFQSCCGKPISRVGQ 58
             V +   QV          CCG P+ R GQ
Sbjct: 291 ISVIIPKNQV----------CCGSPLIRTGQ 311


>gnl|CDD|178143 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component.
          Length = 416

 Score = 26.2 bits (58), Expect = 6.6
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 9/38 (23%)

Query: 32  VLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQ 69
           VLD   V RF NE++S   KP          L++  M+
Sbjct: 388 VLDGATVARFCNEWKSYVEKP---------ELLMLHMR 416


>gnl|CDD|183082 PRK11302, PRK11302, DNA-binding transcriptional regulator HexR;
           Provisional.
          Length = 284

 Score = 26.1 bits (58), Expect = 7.0
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 80  EKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIA 113
           EKIQ  LE L+  ++ VA  I    Q A   SIA
Sbjct: 5   EKIQSRLEHLSKSERKVAEVILASPQTAIHSSIA 38


>gnl|CDD|162961 TIGR02645, ARCH_P_rylase, putative thymidine phosphorylase.
           Members of this family are closely related to
           characterized examples of thymidine phosphorylase (EC
           2.4.2.4) and pyrimidine nucleoside phosphorylase (RC
           2.4.2.2). Most examples are found in the archaea, but
           other examples in Legionella pneumophila str. Paris and
           Rhodopseudomonas palustris CGA009.
          Length = 493

 Score = 26.3 bits (58), Expect = 7.2
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 23/95 (24%)

Query: 124 LLTPDEVEYFFEFFDTI---------TTPRDKEKSYRKL-SKIWKSH------------- 160
           L+   E+       +T           TP +  +S R +  KI  +              
Sbjct: 52  LVEMGEIGLSVSAVETFMAREGDIVTVTPAEAPESLRAIRKKIDGAKLDQHEIASIVGDI 111

Query: 161 NNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMA 195
            + R +++EI AFL+            E + + MA
Sbjct: 112 VDERLSDVEISAFLTASAINGMTMDEIEALTIAMA 146


>gnl|CDD|181181 PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.
          Length = 665

 Score = 26.2 bits (59), Expect = 8.3
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 15/67 (22%)

Query: 86  LEFLAYGQQFVAYNIHPKTQR-AYTW------SIAPHALKVEELPLLTPDEVEYFFEFFD 138
           L F AYG   V     P +Q  A  +       + P+          + +EV     F++
Sbjct: 219 LSFFAYGVGEVEGGELPDSQSEALEFLKAWGFPVNPYRKLCT-----SIEEVL---AFYE 270

Query: 139 TITTPRD 145
            I   R 
Sbjct: 271 EIEEERH 277


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,944,129
Number of extensions: 243875
Number of successful extensions: 486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 13
Length of query: 233
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 143
Effective length of database: 4,049,753
Effective search space: 579114679
Effective search space used: 579114679
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)