RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781190|ref|YP_003065603.1| hypothetical protein CLIBASIA_05485 [Candidatus Liberibacter asiaticus str. psy62] (233 letters) >gnl|CDD|149686 pfam08707, PriCT_2, Primase C terminal 2 (PriCT-2). This alpha helical domain is found at the C terminal of primases. Length = 74 Score = 42.3 bits (100), Expect = 1e-04 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233 +D W+ V MA+ +E EG E+ EW YD KWDSF Sbjct: 13 DDYDSWLRVGMALKHEF--GEEGLELWDEWSAKSSKYDPGECERKWDSFK 60 >gnl|CDD|182335 PRK10252, entF, enterobactin synthase subunit F; Provisional. Length = 1296 Score = 30.0 bits (68), Expect = 0.55 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 3/58 (5%) Query: 85 HLEFLAYGQQFVAYNIHPKTQRAY---TWSIAPHALKVEELPLLTPDEVEYFFEFFDT 139 +E LA Q++ + +R A AL ++ +L P E + T Sbjct: 394 SIEILANPQRYDEATLIAHAERLKALIAQFAADPALLCGDVDILLPGEYAQLAQVNAT 451 >gnl|CDD|181491 PRK08589, PRK08589, short chain dehydrogenase; Validated. Length = 272 Score = 28.2 bits (63), Expect = 2.1 Identities = 10/25 (40%), Positives = 15/25 (60%) Query: 27 AFDVDVLDEQVVDRFNNEFQSCCGK 51 A+ VD+ DEQ V F +E + G+ Sbjct: 58 AYHVDISDEQQVKDFASEIKEQFGR 82 >gnl|CDD|177893 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase. Length = 568 Score = 27.8 bits (62), Expect = 2.5 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 4/32 (12%) Query: 64 MLFRMQETNLKKQKSEEKIQGHLE----FLAY 91 ML +M ET L+K+K E +GH + F Y Sbjct: 410 MLIQMVETELEKRKQEGSYKGHFKGQSHFFGY 441 >gnl|CDD|178779 PLN03241, PLN03241, magnesium chelatase subunit H; Provisional. Length = 1353 Score = 27.5 bits (61), Expect = 2.9 Identities = 10/34 (29%), Positives = 15/34 (44%) Query: 77 KSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTW 110 K E+K+ G+L FL G + + K W Sbjct: 196 KEEDKLVGYLSFLKIGPALLKFVPGEKASDLRNW 229 >gnl|CDD|150725 pfam10083, DUF2321, Uncharacterized protein conserved in bacteria (DUF2321). Members of this family of hypothetical bacterial proteins have no known function. Length = 158 Score = 27.6 bits (61), Expect = 3.1 Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 8/85 (9%) Query: 70 ETNLKKQKSEEKIQGHL---EFLAYGQQFVAYNIHPKTQRAYTW---SIAPHALKVEELP 123 T I+G L G + A + + + W + +EE Sbjct: 37 ATITSCPHCSTPIRGFYYVDGVLGLGSDYDAPSYCHNCGKPFPWTKRKLEAANELIEEDD 96 Query: 124 LLTPDEVEYFFEFFDTIT--TPRDK 146 L+PDE E F +T TPR K Sbjct: 97 NLSPDEKEQFQADLPDLTVETPRTK 121 >gnl|CDD|179835 PRK04350, PRK04350, thymidine phosphorylase; Provisional. Length = 490 Score = 26.7 bits (60), Expect = 5.3 Identities = 7/14 (50%), Positives = 11/14 (78%) Query: 162 NRRYTNIEIRAFLS 175 RY++IE+ AFL+ Sbjct: 108 AGRYSDIELSAFLT 121 >gnl|CDD|180493 PRK06259, PRK06259, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional. Length = 486 Score = 26.5 bits (59), Expect = 6.5 Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 10/31 (32%) Query: 28 FDVDVLDEQVVDRFNNEFQSCCGKPISRVGQ 58 V + QV CCG P+ R GQ Sbjct: 291 ISVIIPKNQV----------CCGSPLIRTGQ 311 >gnl|CDD|178143 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component. Length = 416 Score = 26.2 bits (58), Expect = 6.6 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 9/38 (23%) Query: 32 VLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQ 69 VLD V RF NE++S KP L++ M+ Sbjct: 388 VLDGATVARFCNEWKSYVEKP---------ELLMLHMR 416 >gnl|CDD|183082 PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional. Length = 284 Score = 26.1 bits (58), Expect = 7.0 Identities = 15/34 (44%), Positives = 18/34 (52%) Query: 80 EKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIA 113 EKIQ LE L+ ++ VA I Q A SIA Sbjct: 5 EKIQSRLEHLSKSERKVAEVILASPQTAIHSSIA 38 >gnl|CDD|162961 TIGR02645, ARCH_P_rylase, putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009. Length = 493 Score = 26.3 bits (58), Expect = 7.2 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 23/95 (24%) Query: 124 LLTPDEVEYFFEFFDTI---------TTPRDKEKSYRKL-SKIWKSH------------- 160 L+ E+ +T TP + +S R + KI + Sbjct: 52 LVEMGEIGLSVSAVETFMAREGDIVTVTPAEAPESLRAIRKKIDGAKLDQHEIASIVGDI 111 Query: 161 NNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMA 195 + R +++EI AFL+ E + + MA Sbjct: 112 VDERLSDVEISAFLTASAINGMTMDEIEALTIAMA 146 >gnl|CDD|181181 PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated. Length = 665 Score = 26.2 bits (59), Expect = 8.3 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 15/67 (22%) Query: 86 LEFLAYGQQFVAYNIHPKTQR-AYTW------SIAPHALKVEELPLLTPDEVEYFFEFFD 138 L F AYG V P +Q A + + P+ + +EV F++ Sbjct: 219 LSFFAYGVGEVEGGELPDSQSEALEFLKAWGFPVNPYRKLCT-----SIEEVL---AFYE 270 Query: 139 TITTPRD 145 I R Sbjct: 271 EIEEERH 277 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.137 0.431 Gapped Lambda K H 0.267 0.0651 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,944,129 Number of extensions: 243875 Number of successful extensions: 486 Number of sequences better than 10.0: 1 Number of HSP's gapped: 485 Number of HSP's successfully gapped: 13 Length of query: 233 Length of database: 5,994,473 Length adjustment: 90 Effective length of query: 143 Effective length of database: 4,049,753 Effective search space: 579114679 Effective search space used: 579114679 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 55 (25.1 bits)