RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781190|ref|YP_003065603.1| hypothetical protein
CLIBASIA_05485 [Candidatus Liberibacter asiaticus str. psy62]
         (233 letters)



>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
           coordination, intramolecular disulfide bonds,
           oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
           cerevisiae} (A:1-146,A:314-347)
          Length = 180

 Score = 26.7 bits (58), Expect = 2.8
 Identities = 6/31 (19%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 102 PKTQRAYTWSIAPHALKVEELPL--LTPDEV 130
           P+TQ+   +  +   L+ +++P+     +E+
Sbjct: 3   PETQKGVIFYESHGKLEYKDIPVPKPKANEL 33


>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
           dehydrogenase superfamily protein; 1.55A {Shewanella
           oneidensis mr-1} (A:1-140,A:255-315)
          Length = 201

 Score = 26.4 bits (57), Expect = 3.5
 Identities = 3/30 (10%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 103 KTQRAYTWSIAPHALKVEELPL--LTPDEV 130
           +  + + +    H++ +  + +  L  D++
Sbjct: 3   EQHQVWAYQTKTHSVTLNSVDIPALAADDI 32


>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily),
           rossmann fold, NADP-binding, oxidoreductase; HET: NAP;
           1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
           (A:1-127,A:284-371)
          Length = 215

 Score = 25.7 bits (56), Expect = 5.5
 Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 2/31 (6%)

Query: 102 PKTQRAYTWSIAPHALKVEELPL--LTPDEV 130
           P  Q A T +           P   L  D+V
Sbjct: 9   PPQQTALTVNDHDEVTVWNAAPCPMLPRDQV 39


>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding,
           protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus
           thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A*
           2byt_A 2v0g_A* (A:432-495)
          Length = 64

 Score = 25.5 bits (56), Expect = 6.0
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 114 PHALKVEELPLLTPDEVEY 132
              +  EELP+L PD  + 
Sbjct: 13  VVPVPEEELPVLLPDLKDV 31


>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide,
           amylase, starch, carbohydrate; 1.65A {Bacillus
           acidopullulyticus} (A:831-921)
          Length = 91

 Score = 25.5 bits (56), Expect = 7.2
 Identities = 6/26 (23%), Positives = 14/26 (53%)

Query: 75  KQKSEEKIQGHLEFLAYGQQFVAYNI 100
           +  + ++I+ +L FL      VA+ +
Sbjct: 1   RMTTADQIKQNLTFLESPTNTVAFEL 26


>2e8y_A AMYX protein, pullulanase; multiple domain,
           beta-alpha-barrel, alpha-amylase-family, hydrolase;
           2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*
           (A:620-718)
          Length = 99

 Score = 25.1 bits (55), Expect = 8.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 75  KQKSEEKIQGHLEFLAYGQQFVAYNI 100
           + +S   IQ HLE L   +  +AY +
Sbjct: 1   RLRSAADIQRHLECLTLKEHLIAYRL 26


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.321    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0519    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,934,993
Number of extensions: 87602
Number of successful extensions: 278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 24
Length of query: 233
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 147
Effective length of database: 2,048,819
Effective search space: 301176393
Effective search space used: 301176393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)