RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781190|ref|YP_003065603.1| hypothetical protein
CLIBASIA_05485 [Candidatus Liberibacter asiaticus str. psy62]
(233 letters)
>3kdr_A HK97 family phage portal protein; PSI, MCSG, structural genomics,
protein structure initiative; 2.90A {Corynebacterium
diphtheriae}
Length = 310
Score = 28.7 bits (64), Expect = 1.1
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 108 YTWSIAPHALKVEE---LPLLTPDEVEYFFEF 136
T+ + P +E P + D + +F
Sbjct: 255 VTFGVEPLMSAIEARLNQPDMHADHLANPLKF 286
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.3 bits (59), Expect = 3.1
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 21/47 (44%)
Query: 74 KKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE 120
+KQ + +K+Q L+ Y S AP AL ++
Sbjct: 18 EKQ-ALKKLQASLKL--YADD----------------S-AP-ALAIK 43
>1m4u_A Noggin; BMP antagonist, BMP-7, bone morphogenetic protein, cystine
knot, hormone/growth factor complex; HET: NAG; 2.42A
{Homo sapiens} SCOP: g.17.1.7
Length = 206
Score = 27.3 bits (60), Expect = 3.6
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 138 DTITTPRDKEKSYRKLSKIWKSHNNRRYTNIE 169
D I P++K+ + L + H + +
Sbjct: 25 DPIFDPKEKDLNETLLRSLLGGHYDPGFMATS 56
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2otg_B* 2os8_B* 2ec6_B
Length = 156
Score = 27.2 bits (59), Expect = 3.7
Identities = 10/75 (13%), Positives = 18/75 (24%)
Query: 125 LTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNG 184
L +++ E F I RD S + I + G +
Sbjct: 12 LPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTM 71
Query: 185 SHDEWIPVVMAIHYE 199
+ + E
Sbjct: 72 FLSIFSDKLSGTDSE 86
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolecular disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 27.0 bits (58), Expect = 3.9
Identities = 6/31 (19%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 102 PKTQRAYTWSIAPHALKVEELPL--LTPDEV 130
P+TQ+ + + L+ +++P+ +E+
Sbjct: 3 PETQKGVIFYESHGKLEYKDIPVPKPKANEL 33
>1ra6_A P3D, genome polyprotein; nucleotidyltransferase, RNA-dependent,
polymerase, N-terminus; 2.00A {Human poliovirus 1
mahoney} SCOP: e.8.1.4 PDB: 1ra7_A* 2ily_A* 2ilz_A*
2im0_A* 2im1_A* 2im2_A* 2im3_A* 2ijf_A 1tql_A 1rdr_A
1raj_A 3ddk_A 3cdu_A 3cdw_A
Length = 461
Score = 26.8 bits (59), Expect = 4.3
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 10/94 (10%)
Query: 140 ITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYE 199
+T +D E R +K+ R IE + G+
Sbjct: 155 VTYVKD-EL--RSKTKV--EQGKSR--LIEASSLNDSVAMRMAFGNLYAAF---HKNPGV 204
Query: 200 TRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
GSA G + W K+ +EK F + +D
Sbjct: 205 ITGSAVGXDPDLFWSKIPVLMEEKLFAFDYTGYD 238
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 26.7 bits (58), Expect = 4.9
Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 12/122 (9%)
Query: 124 LLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHN------------NRRYTNIEIR 171
+ T +V+ F E F I +D S + + S I
Sbjct: 50 MFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEAPGPINFT 109
Query: 172 AFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDS 231
FL+ FG+ ++ I + E G + + + R G + + +
Sbjct: 110 MFLTIFGDRIAGTDEEDVIVNAFNLFDEGDGKCKEETLKRSLTTWGEKFSQDEVDQALSE 169
Query: 232 FD 233
Sbjct: 170 AP 171
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase
[isomerizing]; complex (transferase/inhibitor),
glutamine amidotransferase; HET: GLU; 1.80A {Escherichia
coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Length = 240
Score = 26.7 bits (58), Expect = 5.3
Identities = 12/64 (18%), Positives = 20/64 (31%)
Query: 139 TITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHY 198
T P + I HN + +R L G F + + E I ++
Sbjct: 76 THGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWEL 135
Query: 199 ETRG 202
+ G
Sbjct: 136 KQGG 139
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.3 bits (57), Expect = 5.9
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 117 LKVEELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIE-IRAFLS 175
L+ EE+P + D+ E+ E T + E R + W + +R I +R L+
Sbjct: 1273 LEAEEIP--SEDQNEFLLE--RTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALA 1328
Query: 176 CFG 178
+G
Sbjct: 1329 TYG 1331
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human
RGS17(Z2), MU-opioid receptor interacting protein,
GTPase- activating proteins (GAP); 2.40A {Homo sapiens}
Length = 158
Score = 26.5 bits (58), Expect = 6.0
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 60 PKTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKV 119
P LFR L+ + SEE + L ++ I K + Y I+ + K
Sbjct: 44 PAGRNLFR---EFLRTEYSEENLLFWLACEDLKKEQNKKVIEEKARMIYEDYISILSPKE 100
Query: 120 EELPLLTPDEVE 131
L + +
Sbjct: 101 VSLDSRVREVIN 112
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann
fold, NADP-binding, oxidoreductase; HET: NAP; 1.74A
{Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Length = 371
Score = 26.3 bits (56), Expect = 6.3
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 100 IHPKTQRAYTWSIAPHALKVEELPL--LTPDEV 130
I P Q A T + P L D+V
Sbjct: 7 IPPPQQTALTVNDHDEVTVWNAAPCPMLPRDQV 39
>2ijd_1 Picornain 3C, RNA-directed RNA polymerase; RNA-dependent RNA
polymerase, picornavirus, protease, hydrolase,
transferase; 3.40A {Human poliovirus 1 mahoney} SCOP:
b.47.1.4 e.8.1.4
Length = 644
Score = 26.1 bits (57), Expect = 8.1
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 7/83 (8%)
Query: 151 RKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIV 210
R +K+ R IE + G+ GSA G +
Sbjct: 346 RSKTKV--EQGKSR--LIEASSLNDSVAMRMAFGNLYAAF---HKNPGVITGSAVGCDPD 398
Query: 211 REWCKLGRTYDEKSFNAKWDSFD 233
W K+ +EK F + +D
Sbjct: 399 LFWSKIPVLMEEKLFAFDYTGYD 421
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.137 0.431
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,176,261
Number of extensions: 99612
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 26
Length of query: 233
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 144
Effective length of database: 3,535,514
Effective search space: 509114016
Effective search space used: 509114016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.5 bits)