Query gi|254781191|ref|YP_003065604.1| hypothetical protein CLIBASIA_05490 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 165
No_of_seqs 108 out of 117
Neff 5.2
Searched_HMMs 33803
Date Wed Jun 1 23:22:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781191.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2elu_A Zinc finger protein 40 67.0 0.98 2.9E-05 25.4 -0.7 13 4-16 10-22 (37)
2 >2ebb_A Pterin-4-alpha-carbino 42.8 15 0.00046 17.8 2.1 28 67-94 13-42 (101)
3 >2p2w_A Citrate synthase; tran 35.2 19 0.00056 17.2 1.6 58 53-120 17-78 (101)
4 >1a6b_B Momulv, zinc finger pr 29.4 19 0.00057 17.1 0.8 14 1-14 8-21 (40)
5 >1u6p_A GAG polyprotein; MLV, 27.6 22 0.00065 16.8 0.9 14 1-14 21-34 (56)
6 >2exu_A Transcription initiati 26.5 46 0.0014 14.7 2.6 49 67-122 55-103 (109)
7 >3ewg_A NUSG, NGN, putative tr 21.5 28 0.00083 16.1 0.5 51 67-124 37-87 (91)
8 >2gou_A Oxidoreductase, FMN-bi 20.9 52 0.0015 14.4 1.7 22 130-151 19-40 (42)
9 >2c6x_A Citrate synthase 1; tr 20.6 60 0.0018 14.0 3.0 35 53-94 18-52 (107)
10 >2hfq_A Hypothetical protein; 19.3 35 0.001 15.5 0.6 12 88-99 87-98 (109)
No 1
>>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A (A:)
Probab=66.96 E-value=0.98 Score=25.39 Aligned_cols=13 Identities=38% Similarity=0.777 Sum_probs=10.2
Q ss_pred CCCEECCCCCCCH
Q ss_conf 4360634667488
Q gi|254781191|r 4 NACRFCRAKPRCG 16 (165)
Q Consensus 4 d~CrFCkak~~Cr 16 (165)
.||||||-|-+--
T Consensus 10 qhcrfckkkysdv 22 (37)
T 2elu_A 10 QHCRFCKKKYSDV 22 (37)
T ss_dssp CEETTTTEECSSH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999887889
No 2
>>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus} (A:)
Probab=42.81 E-value=15 Score=17.75 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=19.7
Q ss_pred CCCCCCEEECCCCCCCCCC--CHHHHHHHH
Q ss_conf 8688614415877887117--989999999
Q gi|254781191|r 67 EDLPNYELKEGRKGSRTYN--NDNQVEQLL 94 (165)
Q Consensus 67 ~~~pG~KlVeGRs~~R~~~--de~~a~~~l 94 (165)
+++|||+++.|++-.|.|. |-..+...+
T Consensus 13 ~~lpgW~~~d~~~l~r~f~f~~f~~a~~f~ 42 (101)
T 2ebb_A 13 EKADGWKLADERWIVKKYRFQDYLQGIEFV 42 (101)
T ss_dssp HTSTTCEEETTTEEEEEEECSSHHHHHHHH
T ss_pred CCCCCCEECCCCCEEEEEEECCHHHHHHHH
T ss_conf 049897762897099999979999999999
No 3
>>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} (A:213-313)
Probab=35.25 E-value=19 Score=17.18 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHHHHH----HHCCCCCCCCCCCCHHHHHHHHCHH
Q ss_conf 9999999999988986886144158778871179899999999----7167431012568999999986521
Q gi|254781191|r 53 KGVKEEALNVLSSGEDLPNYELKEGRKGSRTYNNDNQVEQLLM----RELGDEAYNRTLLSPTETEQLVKRK 120 (165)
Q Consensus 53 ~~v~~~A~~~~~~G~~~pG~KlVeGRs~~R~~~de~~a~~~l~----~~g~~~~y~~klls~t~~EKllgkk 120 (165)
.++++|....+.+|+.+||| |.|.|++.|--...+. +.+....+ +---.++|+++.++
T Consensus 17 ~~~~~~i~~~l~~~~~i~Gf-------GH~vy~~~DPR~~~l~~~~~~~~~~~~~---~~~a~~ie~~~~~~ 78 (101)
T 2p2w_A 17 DRVEEFVQKCLKEKRKIMGF-------GHRVYKTYDPRAVFLKRVLQEHFPDSKL---FRIASKLEEYIVSN 78 (101)
T ss_dssp GGHHHHHHHHHHHTCCCTTB-------CCSSCSSCCHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCCCC-------CCCCCCCCCCCHHHHHHHHHHHCCHHHH---HHHHHHHHHHHHHC
T ss_conf 12799999999638766676-------7532101342057788788875114789---99999999999856
No 4
>>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus; HET: DNA; NMR {Synthetic} (B:)
Probab=29.40 E-value=19 Score=17.14 Aligned_cols=14 Identities=29% Similarity=1.006 Sum_probs=10.7
Q ss_pred CCCCCCEECCCCCC
Q ss_conf 97643606346674
Q gi|254781191|r 1 MDENACRFCRAKPR 14 (165)
Q Consensus 1 ~~~d~CrFCkak~~ 14 (165)
++-|+|-|||-++-
T Consensus 8 L~kDQCAyCke~GH 21 (40)
T 1a6b_B 8 LDRDQCAYCKEKGH 21 (40)
T ss_dssp CCSSSCSSSCCTTC
T ss_pred CCCHHHHHHHHCCC
T ss_conf 66016377753470
No 5
>>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A mismatch, U-U mismatch, A-C mismatch, zinc finger, NC; HET: AP7; NMR {Moloney murine leukemia virus} (A:)
Probab=27.61 E-value=22 Score=16.77 Aligned_cols=14 Identities=29% Similarity=1.006 Sum_probs=10.2
Q ss_pred CCCCCCEECCCCCC
Q ss_conf 97643606346674
Q gi|254781191|r 1 MDENACRFCRAKPR 14 (165)
Q Consensus 1 ~~~d~CrFCkak~~ 14 (165)
++-|+|-|||-++-
T Consensus 21 L~KDQCAyCKe~GH 34 (56)
T 1u6p_A 21 LDRDQCAYCKEKGH 34 (56)
T ss_dssp CCTTBCSSSCCBSS
T ss_pred CCCCHHHHHHHCCC
T ss_conf 55116055511473
No 6
>>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae} (A:92-200)
Probab=26.50 E-value=46 Score=14.73 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=34.0
Q ss_pred CCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCHHCC
Q ss_conf 86886144158778871179899999999716743101256899999998652101
Q gi|254781191|r 67 EDLPNYELKEGRKGSRTYNNDNQVEQLLMRELGDEAYNRTLLSPTETEQLVKRKKV 122 (165)
Q Consensus 67 ~~~pG~KlVeGRs~~R~~~de~~a~~~l~~~g~~~~y~~klls~t~~EKllgkk~f 122 (165)
..+.||=.||+++ +..+..++...-.-......++++.+|+++|..+.-
T Consensus 55 ~~lkGyIyVEA~~-------~~~V~~ai~gi~~v~~~~~~~v~i~Ei~~~L~~k~~ 103 (109)
T 2exu_A 55 DNYTGRIYIEAPK-------QSVIEKFCNGVPDIYISQKLLIPVQELPLLLKPNLE 103 (109)
T ss_dssp TTSTTEEEEECSC-------HHHHHHHHTTCTTEEEEEEEECCGGGHHHHHCSSCC
T ss_pred CCCCEEEEEEECC-------HHHHHHHHHCHHHHHCCCCCEECHHHHHHHCCCCCC
T ss_conf 8983689998786-------899999985545531366410888997654585720
No 7
>>3ewg_A NUSG, NGN, putative transcription antitermination protein NUSG; alpha/beta structure, antiparallel beta sheet; 2.04A {Methanocaldococcus jannaschii} (A:)
Probab=21.49 E-value=28 Score=16.10 Aligned_cols=51 Identities=24% Similarity=0.225 Sum_probs=35.7
Q ss_pred CCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCHHCCCH
Q ss_conf 8688614415877887117989999999971674310125689999999865210144
Q gi|254781191|r 67 EDLPNYELKEGRKGSRTYNNDNQVEQLLMRELGDEAYNRTLLSPTETEQLVKRKKVSE 124 (165)
Q Consensus 67 ~~~pG~KlVeGRs~~R~~~de~~a~~~l~~~g~~~~y~~klls~t~~EKllgkk~f~e 124 (165)
..+.||=.||.++ +..+..++...-.-......++++.+|+++|..+.--|
T Consensus 37 ~~lkGyIyVEA~~-------~~~v~~ai~gi~~v~~~~~~~vp~~Ei~~~L~~k~~Ve 87 (91)
T 3ewg_A 37 ESLKGYVLVEAET-------KGDVEELIKGMPRVRGIVPGTIAIEEIEPLLTPKLEHH 87 (91)
T ss_dssp TTSTTEEEEEESC-------HHHHHHHHTTCTTEEEECSSCCCGGGTTTTC-------
T ss_pred CCCCEEEEEEECC-------HHHHHHHHHCCCCEECCCCCCCCHHHHHHHCCCCCCCC
T ss_conf 8982799999699-------89999998636442321467528899986567787545
No 8
>>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* (A:111-152)
Probab=20.88 E-value=52 Score=14.40 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=18.7
Q ss_pred HHHHEECCCCCCEEEECCCCCC
Q ss_conf 3210246799807803688751
Q gi|254781191|r 130 LQKFITRKDGKQVIVPCDLPVN 151 (165)
Q Consensus 130 l~~li~kp~GKPtLvp~sDkRp 151 (165)
..-||.-.+|.+.+||.|-||.
T Consensus 19 ~~vfi~~~~G~g~~v~~s~PRA 40 (42)
T 2gou_A 19 VKVFVDNGSDEPGFVDVAVPRA 40 (42)
T ss_dssp CEEEECCSSSSCEEEECCCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 4445677766665567777765
No 9
>>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} (A:213-319)
Probab=20.58 E-value=60 Score=14.00 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 999999999998898688614415877887117989999999
Q gi|254781191|r 53 KGVKEEALNVLSSGEDLPNYELKEGRKGSRTYNNDNQVEQLL 94 (165)
Q Consensus 53 ~~v~~~A~~~~~~G~~~pG~KlVeGRs~~R~~~de~~a~~~l 94 (165)
++++.|....+.+|+.+||| |.|.|++.|-=...|
T Consensus 18 ~~~~~~i~~~l~~~~~i~Gf-------GHrvyk~~DPRa~~l 52 (107)
T 2c6x_A 18 EHAEAYLKEKLEKGERLMGF-------GHRVYKTKDPRAEAL 52 (107)
T ss_dssp TTHHHHHHHHHHTTCCCTTB-------CCSSCSSCCHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCC-------CCCCCCCCHHHHHHH
T ss_conf 01799999999669945145-------664255660678899
No 10
>>2hfq_A Hypothetical protein; A/B protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Nitrosomonas europaea} (A:)
Probab=19.29 E-value=35 Score=15.48 Aligned_cols=12 Identities=8% Similarity=0.016 Sum_probs=5.9
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999997167
Q gi|254781191|r 88 NQVEQLLMRELG 99 (165)
Q Consensus 88 ~~a~~~l~~~g~ 99 (165)
+.++....+.|+
T Consensus 87 ~eV~~~I~~~Gy 98 (109)
T 2hfq_A 87 DEVIEAIKQNGY 98 (109)
T ss_dssp HHHHHHHHHHSE
T ss_pred HHHHHHHHHCCE
T ss_conf 899999985987
Done!