RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781191|ref|YP_003065604.1| hypothetical protein
CLIBASIA_05490 [Candidatus Liberibacter asiaticus str. psy62]
         (165 letters)



>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis,
           oxygen-evolving, tetra- manganese, membrane; HET: CL1
           PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus
           elongatus} (U:48-134)
          Length = 87

 Score = 27.7 bits (62), Expect = 0.91
 Identities = 4/29 (13%), Positives = 13/29 (44%)

Query: 114 EQLVKRKKVSETTWEQLQKFITRKDGKQV 142
           E ++    ++E   + L++ +      +V
Sbjct: 42  EDVLNIPGLTERQKQILRENLEHFTVTEV 70


>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF
           domain, transcription, RNA binding protein; 2.27A
           {Pseudomonas aeruginosa} (A:499-568)
          Length = 70

 Score = 27.0 bits (60), Expect = 1.4
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 114 EQLVKRKKVSETTWEQLQKFITRKDGKQ 141
           ++L K  ++ E T+EQ   F+   +G  
Sbjct: 40  DELKKVSRLGEKTFEQAAGFLRVMNGDN 67


>2hcn_A RNA-directed RNA polymerase (NS5); WEST-NIle virus RNA
           polymerase, structural genomics, marseilles structural
           genomics program @ AFMB, MSGP; 2.35A {Kunjin virus} PDB:
           2hcs_A 2hfz_A (A:84-278,A:394-425)
          Length = 227

 Score = 26.0 bits (57), Expect = 2.7
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 17/76 (22%)

Query: 85  NNDNQVEQLLMRELGDEAYNRTLLSPTETEQLVKRK--------KVSETTWEQL----QK 132
             D + E  ++  L  E   R L      E   + K              W+Q+      
Sbjct: 153 RADLENEAKVLELLDGEH--RRLARAI-IELTYRHKVVKVMRPAADGWYDWQQVPFCSNH 209

Query: 133 F--ITRKDGKQVIVPC 146
           F  +  KDG+ ++ PC
Sbjct: 210 FTELIMKDGRTLVTPC 225


>2reu_A Type II restriction enzyme SAU3AI; helix, beta, random
          coil, endonuclease, hydrolase, magnesium, nuclease,
          restriction system; 1.90A {Staphylococcus aureus}
          (A:149-258)
          Length = 110

 Score = 25.7 bits (56), Expect = 3.2
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 48 IETWMKGVKEEALNVLSSGEDLPNYELKEGRKGSRTYNN 86
          I   +K + ++ +  L  G  L     K  + G R  NN
Sbjct: 2  INGPVKRMWDDTVKKLKEGVTLEAVPDKSTKDGWRIKNN 40


>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET:
           F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A
           2qji_A (A:)
          Length = 273

 Score = 25.5 bits (55), Expect = 4.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 130 LQKFITRKDGKQVIVPCDLPVNH 152
           L++   R+  K VIVP D  V++
Sbjct: 16  LERIFNRESEKTVIVPMDHGVSN 38


>2oka_A Hypothetical protein; PAR82, NESG, structural genomics,
          PSI-2, protein structure initiative, northeast
          structural genomics consortium; 2.50A {Pseudomonas
          aeruginosa} PDB: 2obk_A (A:)
          Length = 104

 Score = 24.4 bits (53), Expect = 7.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 6  CRFCRAKPRCGALAVKALSTFSE 28
          C  C+   R   LA + LSTF++
Sbjct: 13 CTQCQWLLRAAWLAQELLSTFAD 35


>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain,
           helix turn helix motif, structural genomics, NPPSFA; NMR
           {Homo sapiens} (A:)
          Length = 98

 Score = 24.4 bits (53), Expect = 8.6
 Identities = 4/22 (18%), Positives = 8/22 (36%)

Query: 114 EQLVKRKKVSETTWEQLQKFIT 135
           E L + + ++    E   K   
Sbjct: 70  EDLERVEGITGKQMESFLKANI 91


>3bz1_U Photosystem II 12 kDa extrinsic protein; electron transport
           photosystem, membrane complex, transmembrane
           alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG
           LMT; 2.90A {Thermosynechococcus elongatus} PDB: 2axt_U*
           3bz2_U* 3a0b_U* 3a0h_U* (U:)
          Length = 104

 Score = 24.1 bits (52), Expect = 9.0
 Identities = 3/27 (11%), Positives = 11/27 (40%)

Query: 114 EQLVKRKKVSETTWEQLQKFITRKDGK 140
           E ++    ++E   + L++ +      
Sbjct: 59  EDVLNIPGLTERQKQILRENLEHFTVT 85


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.315    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0520    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,155,180
Number of extensions: 46424
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 19
Length of query: 165
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 83
Effective length of database: 2,184,039
Effective search space: 181275237
Effective search space used: 181275237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)