RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781191|ref|YP_003065604.1| hypothetical protein
CLIBASIA_05490 [Candidatus Liberibacter asiaticus str. psy62]
         (165 letters)



>d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 580

 Score = 31.5 bits (71), Expect = 0.036
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 108 LSPTETEQLVKRKKVSETTWEQLQKFITRKDGKQVIVPCDLPV 150
           L   E     +RK+      E ++K +  K+ + +    D+PV
Sbjct: 9   LCDQEKTFRQQRKEH---IRESMKKLLGPKNSEGLHSARDVPV 48


>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase
           {Archaeon Thermoproteus tenax [TaxId: 2271]}
          Length = 251

 Score = 26.2 bits (57), Expect = 1.4
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 134 ITRKDGKQVIVPCDLPVNHLKA 155
           I  + GK +I+  D  + H  A
Sbjct: 9   IFARRGKSIILAYDHGIEHGPA 30


>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 90

 Score = 25.0 bits (55), Expect = 3.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 114 EQLVKRKKVSETTWEQLQKFITRKDG 139
           ++L K  ++ E T+EQ   F+   +G
Sbjct: 65  DELKKVSRLGEKTFEQAAGFLRVMNG 90


>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 86

 Score = 24.2 bits (53), Expect = 6.3
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 6  CRFCRAKPRCGALAVKALSTFSE 28
          C  C    R G +A + L TF+ 
Sbjct: 10 CTQCNWLLRAGWMAQEILQTFAS 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0692    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 571,072
Number of extensions: 23644
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 8
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.7 bits)