Query gi|254781192|ref|YP_003065605.1| hypothetical protein CLIBASIA_05495 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 198
No_of_seqs 108 out of 241
Neff 7.6
Searched_HMMs 23785
Date Wed Jun 1 01:44:13 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781192.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1je5_A Helix-destabilizing pro 100.0 2.8E-36 1.2E-40 231.8 13.9 177 1-191 1-203 (206)
2 1j83_A Endo-1,4-beta glucanase 47.6 12 0.00052 16.1 3.0 25 137-163 95-119 (180)
3 2kjw_A TS9, 30S ribosomal prot 39.3 17 0.00071 15.3 6.0 36 26-61 43-79 (96)
4 1xbr_A Protein (T protein); co 28.4 17 0.00072 15.3 1.2 35 4-39 24-58 (184)
5 3e8v_A Possible transglutamina 25.6 29 0.0012 13.9 4.0 52 111-163 4-56 (82)
6 2x6u_A T-box transcription fac 25.2 25 0.001 14.4 1.5 35 4-39 28-62 (203)
7 1h6f_A T-box transcription fac 20.0 15 0.00063 15.6 -0.4 35 4-39 27-61 (193)
8 2rp4_A Transcription factor P5 10.2 70 0.003 11.7 4.7 35 25-60 18-52 (76)
9 1vmb_A 30S ribosomal protein S 8.6 81 0.0034 11.3 4.4 38 26-63 18-56 (140)
10 2huh_A Putative DNA mismatch r 8.2 65 0.0027 11.9 0.0 45 134-184 80-130 (147)
No 1
>1je5_A Helix-destabilizing protein; OB-fold, beta barrel, DNA binding protein; 1.90A {Enterobacteria phage T7} SCOP: b.40.4.7
Probab=100.00 E-value=2.8e-36 Score=231.82 Aligned_cols=177 Identities=19% Similarity=0.214 Sum_probs=121.6
Q ss_pred CCE---EEEEEEE-EEEEECCCCCCCCC-----CCCEEEEEEEECCCCHH---HHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 943---6731799-94153058624667-----78408999997766689---999999999999985403410011345
Q gi|254781192|r 1 MAK---VLIKGRL-SYPQLHEPRAYGDK-----GDEVYSADILFSKTDNE---QCDKLEQAIREAGEEKFGGSNMSALIE 68 (198)
Q Consensus 1 m~k---vt~~gr~-~y~~L~~Pd~~~~~-----~~~~Ys~~l~i~k~d~~---~~~~i~~~i~~~~~~~~~~~~~~~~~~ 68 (198)
|+| +|+.|++ +||||++||++|+. .+++|||+|+|++++.+ +++.|+++++++....... .....
T Consensus 1 m~~~~~ttp~G~a~~Y~~L~~PD~~f~~~~~~~~~g~Y~v~L~v~k~d~~a~~~~~~i~~~~~~a~~~~~~~---~~~k~ 77 (206)
T 1je5_A 1 MAKKIFTSALGTAEPYAYIAKPDYGNEERGFGNPRGVYKVDLTIPNKDPRCQRMVDEIVKCHEEAYAAAVEE---YEANP 77 (206)
T ss_dssp CCCSCEECCSEEECSSCEEEEEECCC---CCSCCSCEEEEEEEEETTSHHHHHHHHHHHHHHHHHHHHHHHH---HHTSC
T ss_pred CCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH---HCCCC
T ss_conf 984423279833340553378874433234678896389999974761789999999999999999999987---50365
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEECCCC------------CCCCCEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 554556763004866544443334541115548970578------------77686589368868236666531366289
Q gi|254781192|r 69 RMKRTGRYPLKDGDQKISTSLKPEAYEVYAGQYYITPKN------------KKVRPRLVDRHVQEVTENIQEVFYSGCHV 136 (198)
Q Consensus 69 ~~~~~~~~p~~dgD~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~P~v~Ds~g~~l~~~~~~~I~sGs~v 136 (198)
......+.+.++++...+. +.++.|.++++++. ++++|.|||++++||++ .++|||||++
T Consensus 78 ~k~~~~k~~~~~~~~~~p~------~~e~~G~~~fk~K~Ka~~~~~k~g~~~~~~P~v~D~~~~~l~~--~~~i~~Gs~~ 149 (206)
T 1je5_A 78 PAVARGKKPLKPYEGDMPF------FDNGDGTTTFKFKCYASFQDKKTKETKHINLVVVDSKGKKMED--VPIIGGGSKL 149 (206)
T ss_dssp C-------CCCCCBCCCSE------EECSSSEEEEEEEEESEEECTTTCCEEECCCCEECTTSCBCSS--CCCCCTTCEE
T ss_pred CCCCCCCCCCCCCCCCCCC------CCCCCCCEEEEEEEEEEEECCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCEE
T ss_conf 4444233577776566886------5365874899999866741155677555587079698989888--6603578689
Q ss_pred EEEEEEEEEECC--CCEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999787627--9756998855258974156466776754346555665422347
Q gi|254781192|r 137 NAIISVYAYTFQ--GTKGVTFTLTGVQFVKDDTRWGGQLRASSSDFESYEEETASID 191 (198)
Q Consensus 137 ~v~~~~~pY~~~--~g~GVsl~L~aVQ~i~~~e~~gg~~~~~~d~f~~~~~~~~~~~ 191 (198)
||++.++||+.+ .|.||||||++||||+++|+.||+.. .+|+++++++++.+
T Consensus 150 ~v~~~~~py~~~~~~g~Gvsl~L~~VQv~~~~e~~~g~~~---~~~~~~edG~~~~~ 203 (206)
T 1je5_A 150 KVKYSLVPYKWNTAVGASVKLQLESVMLVELATFGGGEDD---WADEVEENGYVASG 203 (206)
T ss_dssp EEEEEEEEECCCSSCCBEEEEEEEEEEEEECCC------C---CGGGCSCC------
T ss_pred EEEEEEEEEEECCCCCEEEEEEECEEEEEECCCCCCCCCC---CCCCCCCCCCCCCC
T ss_conf 9999998788659886389988366999871256787766---67644567711467
No 2
>1j83_A Endo-1,4-beta glucanase ENGF; carbohydrate binding module, hydrolase; 1.70A {Clostridium cellulovorans} SCOP: b.18.1.12 PDB: 1j84_A*
Probab=47.64 E-value=12 Score=16.12 Aligned_cols=25 Identities=8% Similarity=-0.065 Sum_probs=10.2
Q ss_pred EEEEEEEEEECCCCEEEEEEECCEEEE
Q ss_conf 999999787627975699885525897
Q gi|254781192|r 137 NAIISVYAYTFQGTKGVTFTLTGVQFV 163 (198)
Q Consensus 137 ~v~~~~~pY~~~~g~GVsl~L~aVQ~i 163 (198)
.|++-..|++...|. .---++|+|.
T Consensus 95 tVsIAAIPQs~~~gW--aNP~~av~V~ 119 (180)
T 1j83_A 95 NVSIAAIPQSSTHGW--GNPTRAIRVW 119 (180)
T ss_dssp CEEEEEEEEESSCCC--CCCSCCEEEC
T ss_pred EEEEEECCCCCCCCC--CCCCCCEEEC
T ss_conf 689997456776676--5823246845
No 3
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=39.27 E-value=17 Score=15.31 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=26.4
Q ss_pred CCEEEEEEEECCC-CHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8408999997766-68999999999999998540341
Q gi|254781192|r 26 DEVYSADILFSKT-DNEQCDKLEQAIREAGEEKFGGS 61 (198)
Q Consensus 26 ~~~Ys~~l~i~k~-d~~~~~~i~~~i~~~~~~~~~~~ 61 (198)
-++|.+.+|++.+ +.+.++.+.+.++...++.-+.-
T Consensus 43 ~~KYEl~~Il~PdLseeei~~lie~i~~iIt~~GG~I 79 (96)
T 2kjw_A 43 PGRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARV 79 (96)
T ss_dssp SSCEEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 8760599997999998999999999999998689889
No 4
>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4
Probab=28.42 E-value=17 Score=15.29 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=25.6
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 673179994153058624667784089999977666
Q gi|254781192|r 4 VLIKGRLSYPQLHEPRAYGDKGDEVYSADILFSKTD 39 (198)
Q Consensus 4 vt~~gr~~y~~L~~Pd~~~~~~~~~Ys~~l~i~k~d 39 (198)
||..||-.||.|.=-=+..++ +..|++.|-+..-|
T Consensus 24 ITk~GRrmFP~l~~~vsGLdp-~~~Y~v~l~~~~~D 58 (184)
T 1xbr_A 24 VTKNGRRMFPVLKVSMSGLDP-NAMYTVLLDFVAAD 58 (184)
T ss_dssp CBTTCEECSSCCEEEEECSCT-TSEEEEEEEEEESS
T ss_pred EECCCCCCCCCEEEEEECCCC-CCCEEEEEEEEECC
T ss_conf 915872568724999978895-64569999999856
No 5
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=25.61 E-value=29 Score=13.94 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=34.1
Q ss_pred CCEEECCCCCCCCCCC-CCCCCCCCEEEEEEEEEEEECCCCEEEEEEECCEEEE
Q ss_conf 8658936886823666-6531366289999999787627975699885525897
Q gi|254781192|r 111 RPRLVDRHVQEVTENI-QEVFYSGCHVNAIISVYAYTFQGTKGVTFTLTGVQFV 163 (198)
Q Consensus 111 ~P~v~Ds~g~~l~~~~-~~~I~sGs~v~v~~~~~pY~~~~g~GVsl~L~aVQ~i 163 (198)
...|+|++|+|.+... .++||+-+...-..+.+ =+..|-..+++.+....+-
T Consensus 4 ~V~V~d~~G~PV~gA~V~FkvyNYAEfy~va~~~-TD~~G~a~lt~G~Gdmlv~ 56 (82)
T 3e8v_A 4 SVLVTDAEGQPVADATVEFKVYNYAEFYTVATKH-TDRSGHASLTAGKGDMLVW 56 (82)
T ss_dssp EEEEECTTSCBCTTCEEEEEEEETTEEEEEEEEE-CCTTSEEEEECCSEEEEEE
T ss_pred EEEEECCCCCCCCCCEEEEEEECHHHEEEEEEEE-ECCCCEEEEEECCCCEEEE
T ss_conf 9999958999989999999996027526720128-8788609999558759999
No 6
>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*
Probab=25.20 E-value=25 Score=14.36 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=25.4
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 673179994153058624667784089999977666
Q gi|254781192|r 4 VLIKGRLSYPQLHEPRAYGDKGDEVYSADILFSKTD 39 (198)
Q Consensus 4 vt~~gr~~y~~L~~Pd~~~~~~~~~Ys~~l~i~k~d 39 (198)
||..||-.||.|.=-=+.-++ +..|.+.|-+..-|
T Consensus 28 ITk~GRrmFP~l~~~vsGLdp-~~~Y~v~l~~~~~d 62 (203)
T 2x6u_A 28 ITKAGRRMFPSYKVKVTGLNP-KTKYILLMDIVPAD 62 (203)
T ss_dssp CBSSCEECSSCCEEEEESCCS-SSEEEEEEEEEEEE
T ss_pred ECCCCEECCCCEEEEEECCCC-CCCEEEEEEEEECC
T ss_conf 845874147752999968886-75468999989877
No 7
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4
Probab=19.99 E-value=15 Score=15.61 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=25.8
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 673179994153058624667784089999977666
Q gi|254781192|r 4 VLIKGRLSYPQLHEPRAYGDKGDEVYSADILFSKTD 39 (198)
Q Consensus 4 vt~~gr~~y~~L~~Pd~~~~~~~~~Ys~~l~i~k~d 39 (198)
||..||-.||.|.=-=+..++ +..|++.|-+..-|
T Consensus 27 vTk~GRrmFP~l~~~vsGLdp-~~~Y~v~l~~~~~D 61 (193)
T 1h6f_A 27 ITKSGRRMFPPFKVRCSGLDK-KAKYILLMDIIAAD 61 (193)
T ss_dssp CCTTCBCCSSCCEEEEESCCS-SSEEEEEEEEEEEE
T ss_pred EECCCCCCCCCEEEEEECCCC-CCEEEEEEEEEECC
T ss_conf 915873247712899868895-75168999999874
No 8
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=10.17 E-value=70 Score=11.66 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=25.0
Q ss_pred CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 784089999977666899999999999999854034
Q gi|254781192|r 25 GDEVYSADILFSKTDNEQCDKLEQAIREAGEEKFGG 60 (198)
Q Consensus 25 ~~~~Ys~~l~i~k~d~~~~~~i~~~i~~~~~~~~~~ 60 (198)
.+|.|.+.|..|+.+ =.+..|+-.|++++.+-.-+
T Consensus 18 ~dGdYrL~itcp~Ke-~LlqSIEgmi~~~A~~vLRn 52 (76)
T 2rp4_A 18 PDGDYRLAITCPNKE-WLLQSIEGMIKEAAAEVLRN 52 (76)
T ss_dssp TTTBEEEEEEESCHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEECCCHH-HHHHHHHHHHHHHHHHHHHC
T ss_conf 699657998707599-99999999999999999849
No 9
>1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.70A {Thermotoga maritima} SCOP: d.58.14.1
Probab=8.58 E-value=81 Score=11.29 Aligned_cols=38 Identities=16% Similarity=0.349 Sum_probs=26.4
Q ss_pred CCEEEEEEEECCC-CHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8408999997766-6899999999999999854034100
Q gi|254781192|r 26 DEVYSADILFSKT-DNEQCDKLEQAIREAGEEKFGGSNM 63 (198)
Q Consensus 26 ~~~Ys~~l~i~k~-d~~~~~~i~~~i~~~~~~~~~~~~~ 63 (198)
.-.|.+.+|++++ +.+.++.+.+.+.....+..++...
T Consensus 18 ~R~YE~~~Il~p~l~e~~~~~~~~~i~~~I~~~~gG~I~ 56 (140)
T 1vmb_A 18 ERIYESMFIIAPNVPEEERENLVERVKKIIEERVKGKID 56 (140)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 330119999889999899999999999999755998899
No 10
>2huh_A Putative DNA mismatch repair protein; NP_811092.1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=8.22 E-value=65 Score=11.86 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=30.0
Q ss_pred CEEEEEEEEEEEECCC------CEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 2899999997876279------75699885525897415646677675434655566
Q gi|254781192|r 134 CHVNAIISVYAYTFQG------TKGVTFTLTGVQFVKDDTRWGGQLRASSSDFESYE 184 (198)
Q Consensus 134 s~v~v~~~~~pY~~~~------g~GVsl~L~aVQ~i~~~e~~gg~~~~~~d~f~~~~ 184 (198)
++.++.+.+.+|.... -.-|-+|+.+|.+-++ ..+.+.+.|++..
T Consensus 80 d~~~~~vQ~iayK~~k~f~lKpa~~v~~rid~vKFYK~------htf~endFFe~~A 130 (147)
T 2huh_A 80 EMERVAVQLIAFKDGKPAAIKPAVSVELRIDTVKFYKL------HTFSASDFFEEPA 130 (147)
T ss_dssp GCSSEEEEEEEECSSSCCCCCCCEEEEECCCGGGGGCG------GGSEEETTEEEEE
T ss_pred CCCEEEEEEEEECCCCCCCCCCCEEEEEEECHHHHHHH------HHCCCCCCCCCCE
T ss_conf 56325999999868995235877148999545541113------0023387647742
Done!