Query gi|254781192|ref|YP_003065605.1| hypothetical protein CLIBASIA_05495 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 198
No_of_seqs 108 out of 241
Neff 7.6
Searched_HMMs 13730
Date Wed Jun 1 11:44:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781192.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1je5a_ b.40.4.7 (A:) gp2.5 {B 100.0 6.6E-37 4.8E-41 234.1 14.5 160 1-171 1-186 (197)
2 d1j83a_ b.18.1.12 (A:) Endo-1, 44.4 8.1 0.00059 15.8 3.0 14 137-150 95-108 (180)
3 d1xbra_ b.2.5.4 (A:) T domain 32.9 7.4 0.00054 16.0 1.2 35 4-39 24-58 (184)
4 d1h6fa_ b.2.5.4 (A:) T-box pro 22.7 7.1 0.00052 16.1 -0.4 35 4-39 24-58 (184)
5 d2f2ha1 b.150.1.1 (A:666-773) 12.4 34 0.0025 12.1 1.9 51 109-167 33-83 (108)
6 d2iaya1 d.376.1.1 (A:1-113) Hy 7.4 53 0.0038 11.0 3.0 15 8-22 38-52 (113)
7 d2qalf1 d.58.14.1 (F:1-100) Ri 6.9 56 0.0041 10.8 4.6 51 28-80 3-53 (100)
8 d1k1ga_ d.51.1.1 (A:) RNA spli 6.5 59 0.0043 10.7 2.9 11 1-11 39-49 (122)
9 d2pu9b1 b.34.4.3 (B:1-73) Ferr 6.4 37 0.0027 11.9 -0.8 14 133-146 4-17 (73)
10 d1j3ba1 c.91.1.1 (A:212-529) P 6.0 63 0.0046 10.5 2.5 35 4-38 103-137 (318)
No 1
>d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]}
Probab=100.00 E-value=6.6e-37 Score=234.13 Aligned_cols=160 Identities=20% Similarity=0.259 Sum_probs=117.4
Q ss_pred CCE---EEEEEEE-EEEEECCCCCCCCC-----CCCEEEEEEEECCCCH---HHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 943---6731799-94153058624667-----7840899999776668---9999999999999985403410011345
Q gi|254781192|r 1 MAK---VLIKGRL-SYPQLHEPRAYGDK-----GDEVYSADILFSKTDN---EQCDKLEQAIREAGEEKFGGSNMSALIE 68 (198)
Q Consensus 1 m~k---vt~~gr~-~y~~L~~Pd~~~~~-----~~~~Ys~~l~i~k~d~---~~~~~i~~~i~~~~~~~~~~~~~~~~~~ 68 (198)
|+| +|+.|+| +||||++||++|+. .+|+|||+|+|+++++ ++++.|+++++++....... .....
T Consensus 1 m~k~~~ttp~G~a~~Y~~L~kPDt~f~~~~~~~~~g~Ykv~L~v~k~d~~a~~~i~~i~~~~e~a~~~~~~~---~~~~~ 77 (197)
T d1je5a_ 1 MAKKIFTSALGTAEPYAYIAKPDYGNEERGFGNPRGVYKVDLTIPNKDPRCQRMVDEIVKCHEEAYAAAVEE---YEANP 77 (197)
T ss_dssp CCCSCEECCSEEECSSCEEEEEECCC---CCSCCSCEEEEEEEEETTSHHHHHHHHHHHHHHHHHHHHHHHH---HHTSC
T ss_pred CCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCC
T ss_conf 985533279832341543378985543334678896189999972641779999999999999999999987---53456
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEECCC------------CCCCCCEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 55455676300486654444333454111554897057------------877686589368868236666531366289
Q gi|254781192|r 69 RMKRTGRYPLKDGDQKISTSLKPEAYEVYAGQYYITPK------------NKKVRPRLVDRHVQEVTENIQEVFYSGCHV 136 (198)
Q Consensus 69 ~~~~~~~~p~~dgD~~~~~~~~~~~~~~~~g~~~~~~~------------~~~~~P~v~Ds~g~~l~~~~~~~I~sGs~v 136 (198)
......+.|.+++++..++ +.+..|.++++++ +++++|.|||++++||++ .++|||||++
T Consensus 78 ~k~~~~K~~~~p~~~~~~~------~~~~~G~~~fk~K~Ka~~~~~kt~~~~~~~P~i~Ds~~~~l~~--~~~i~~Gs~~ 149 (197)
T d1je5a_ 78 PAVARGKKPLKPYEGDMPF------FDNGDGTTTFKFKCYASFQDKKTKETKHINLVVVDSKGKKMED--VPIIGGGSKL 149 (197)
T ss_dssp C-------CCCCCBCCCSE------EECSSSEEEEEEEEESEEECTTTCCEEECCCCEECTTSCBCSS--CCCCCTTCEE
T ss_pred CCCCCCCCCCCCCCCCCCC------CCCCCCCEEEEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCEE
T ss_conf 5443111356876445777------5366885899999876502456787554487379898999888--7612368689
Q ss_pred EEEEEEEEEEC--CCCEEEEEEECCEEEEECCCCCCC
Q ss_conf 99999978762--797569988552589741564667
Q gi|254781192|r 137 NAIISVYAYTF--QGTKGVTFTLTGVQFVKDDTRWGG 171 (198)
Q Consensus 137 ~v~~~~~pY~~--~~g~GVsl~L~aVQ~i~~~e~~gg 171 (198)
||++.++||+. +.|.||||||++||||+++|+.||
T Consensus 150 ~v~~~~~py~~~~~~g~Gvsl~L~~VQvi~~~e~~gg 186 (197)
T d1je5a_ 150 KVKYSLVPYKWNTAVGASVKLQLESVMLVELATFGGG 186 (197)
T ss_dssp EEEEEEEEECCCSSCCBEEEEEEEEEEEEECCC----
T ss_pred EEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCC
T ss_conf 9999985545079886389998446999881267787
No 2
>d1j83a_ b.18.1.12 (A:) Endo-1,4-beta glucanase EngF {Clostridium cellulovorans [TaxId: 1493]}
Probab=44.36 E-value=8.1 Score=15.78 Aligned_cols=14 Identities=14% Similarity=0.036 Sum_probs=6.7
Q ss_pred EEEEEEEEEECCCC
Q ss_conf 99999978762797
Q gi|254781192|r 137 NAIISVYAYTFQGT 150 (198)
Q Consensus 137 ~v~~~~~pY~~~~g 150 (198)
.|++...|++...|
T Consensus 95 tVsIAAIPQs~~~g 108 (180)
T d1j83a_ 95 NVSIAAIPQSSTHG 108 (180)
T ss_dssp CEEEEEEEEESSCC
T ss_pred EEEEEECCCCCCCC
T ss_conf 58999746787767
No 3
>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=32.93 E-value=7.4 Score=16.01 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=26.4
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 673179994153058624667784089999977666
Q gi|254781192|r 4 VLIKGRLSYPQLHEPRAYGDKGDEVYSADILFSKTD 39 (198)
Q Consensus 4 vt~~gr~~y~~L~~Pd~~~~~~~~~Ys~~l~i~k~d 39 (198)
||..||-.||.|.=-=+..++ +..|.+.|-+..-|
T Consensus 24 ITk~GRrmFP~l~~~vsGLdp-~~~Y~v~l~~~~~D 58 (184)
T d1xbra_ 24 VTKNGRRMFPVLKVSMSGLDP-NAMYTVLLDFVAAD 58 (184)
T ss_dssp CBTTCEECSSCCEEEEECSCT-TSEEEEEEEEEESS
T ss_pred EECCCCCCCCCEEEEEECCCC-CCCEEEEEEEEECC
T ss_conf 915873458724999978895-74479999999855
No 4
>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.65 E-value=7.1 Score=16.13 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=26.2
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 673179994153058624667784089999977666
Q gi|254781192|r 4 VLIKGRLSYPQLHEPRAYGDKGDEVYSADILFSKTD 39 (198)
Q Consensus 4 vt~~gr~~y~~L~~Pd~~~~~~~~~Ys~~l~i~k~d 39 (198)
||..||-.||.|.=-=+..++ +..|++.|-+..-|
T Consensus 24 vTk~GRrmFP~l~~~vsGLdp-~~~Y~v~l~~~~~D 58 (184)
T d1h6fa_ 24 ITKSGRRMFPPFKVRCSGLDK-KAKYILLMDIIAAD 58 (184)
T ss_dssp CCTTCBCCSSCCEEEEESCCS-SSEEEEEEEEEEEE
T ss_pred EECCCCCCCCEEEEEEECCCC-CCCEEEEEEEEECC
T ss_conf 926982107616999934697-76468999999874
No 5
>d2f2ha1 b.150.1.1 (A:666-773) Putative glucosidase YicI, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.44 E-value=34 Score=12.12 Aligned_cols=51 Identities=12% Similarity=0.003 Sum_probs=35.0
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEECCEEEEECCC
Q ss_conf 76865893688682366665313662899999997876279756998855258974156
Q gi|254781192|r 109 KVRPRLVDRHVQEVTENIQEVFYSGCHVNAIISVYAYTFQGTKGVTFTLTGVQFVKDDT 167 (198)
Q Consensus 109 ~~~P~v~Ds~g~~l~~~~~~~I~sGs~v~v~~~~~pY~~~~g~GVsl~L~aVQ~i~~~e 167 (198)
...-.|+|.+|+.... -.....|..++|..+ +..+..++.|.+++-++-.+
T Consensus 33 ~~~~~V~~~~G~~~~t--v~v~R~g~~I~v~~~------g~~~~wsv~L~~~~~v~~v~ 83 (108)
T d2f2ha1 33 EAVCEVPAADGSVIFT--LKAARTGNTITVTGA------GEAKNWTLCLRNVVKVNGLQ 83 (108)
T ss_dssp EEEEEEECTTSCEEEE--EEEEEETTEEEEEEE------ECCBSCEEEETTCCCCSEES
T ss_pred EEEEEEECCCCCEEEE--EEEEEECCEEEEEEC------CCCCCEEEEEECCCEEEEEC
T ss_conf 8899997999969899--999980999999985------88998099993784135570
No 6
>d2iaya1 d.376.1.1 (A:1-113) Hypothetical protein Lp2179 {Lactobacillus plantarum [TaxId: 1590]}
Probab=7.44 E-value=53 Score=10.99 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=6.0
Q ss_pred EEEEEEEECCCCCCC
Q ss_conf 799941530586246
Q gi|254781192|r 8 GRLSYPQLHEPRAYG 22 (198)
Q Consensus 8 gr~~y~~L~~Pd~~~ 22 (198)
|-..|-|+-+|...+
T Consensus 38 Gnf~l~r~Ld~~~~~ 52 (113)
T d2iaya1 38 GAFSFERSLDPTSPY 52 (113)
T ss_dssp SCEEEEEEESCSSTT
T ss_pred CCEEEEECCCCCCCC
T ss_conf 557997215788998
No 7
>d2qalf1 d.58.14.1 (F:1-100) Ribosomal protein S6 {Escherichia coli [TaxId: 562]}
Probab=6.92 E-value=56 Score=10.83 Aligned_cols=51 Identities=16% Similarity=0.082 Sum_probs=27.5
Q ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 08999997766689999999999999985403410011345554556763004
Q gi|254781192|r 28 VYSADILFSKTDNEQCDKLEQAIREAGEEKFGGSNMSALIERMKRTGRYPLKD 80 (198)
Q Consensus 28 ~Ys~~l~i~k~d~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d 80 (198)
+|.+.+++..+-.+.++.+.+.+.+...+.-+. ......+ -...+.+|++.
T Consensus 3 ~YE~~~Il~p~~~e~~~~~~~~~~~~i~~~gg~-v~~~~~~-G~r~LAY~I~k 53 (100)
T d2qalf1 3 HYEIVFMVHPDQSEQVPGMIERYTAAITGAEGK-IHRLEDW-GRRQLAYPINK 53 (100)
T ss_dssp EECEEEEECGGGTTHHHHHHHHHHHHHHHTTCC-CCCCCCC-BSCBCSSCTTS
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCE-EEEEEEE-EEEECCCCCCC
T ss_conf 524999978880789999999999999868988-9998620-00302442466
No 8
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.48 E-value=59 Score=10.69 Aligned_cols=11 Identities=45% Similarity=0.700 Sum_probs=8.0
Q ss_pred CCEEEEEEEEE
Q ss_conf 94367317999
Q gi|254781192|r 1 MAKVLIKGRLS 11 (198)
Q Consensus 1 m~kvt~~gr~~ 11 (198)
.+||++.||-|
T Consensus 39 gckI~IrGrGS 49 (122)
T d1k1ga_ 39 NAKIMIRGKGS 49 (122)
T ss_dssp CCEEEEEESTT
T ss_pred CCEEEEEECCC
T ss_conf 98899971577
No 9
>d2pu9b1 b.34.4.3 (B:1-73) Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain {Synechocystis sp. [TaxId: 1143]}
Probab=6.41 E-value=37 Score=11.93 Aligned_cols=14 Identities=36% Similarity=0.418 Sum_probs=4.8
Q ss_pred CCEEEEEEEEEEEE
Q ss_conf 62899999997876
Q gi|254781192|r 133 GCHVNAIISVYAYT 146 (198)
Q Consensus 133 Gs~v~v~~~~~pY~ 146 (198)
|+.|||.-.+.-|.
T Consensus 4 GdrVrV~~sv~Vyh 17 (73)
T d2pu9b1 4 GDRVRVTSSVVVYH 17 (73)
T ss_dssp TCEEEECSCCEESC
T ss_pred CCEEEEEEEEEEEE
T ss_conf 99999800189984
No 10
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}
Probab=6.01 E-value=63 Score=10.54 Aligned_cols=35 Identities=20% Similarity=0.073 Sum_probs=0.0
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 67317999415305862466778408999997766
Q gi|254781192|r 4 VLIKGRLSYPQLHEPRAYGDKGDEVYSADILFSKT 38 (198)
Q Consensus 4 vt~~gr~~y~~L~~Pd~~~~~~~~~Ys~~l~i~k~ 38 (198)
+|.++|++||.-+-|.+......++=+.-+++..+
T Consensus 103 ~t~N~R~~yp~~~i~n~~~~~~~~~p~~iifLt~D 137 (318)
T d1j3ba1 103 KTENTRSSYPIAHLENVVESGVAGHPRAIFFLSAD 137 (318)
T ss_dssp SCSCCEEEEEGGGCSSBCTTSEECCEEEEEEEECC
T ss_pred CCCCCEEEEEHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf 66752177365762222112437887436898527
Done!