RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781192|ref|YP_003065605.1| hypothetical protein
CLIBASIA_05495 [Candidatus Liberibacter asiaticus str. psy62]
(198 letters)
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps,
trans-prenyltransferase; 2.40A {Sulfolobus solfataricus}
PDB: 2azk_A (A:1-132)
Length = 132
Score = 28.1 bits (62), Expect = 0.85
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 1/61 (1%)
Query: 78 LKDGDQKISTSLKPEAYEVY-AGQYYITPKNKKVRPRLVDRHVQEVTENIQEVFYSGCHV 136
D+ I L YI K+ R L + +I++ + +
Sbjct: 19 KATIDRLIEQFLNSNRDWDLVDISSYILKDGKRFRGTLNMFFTVALGGDIKDSYGGALAI 78
Query: 137 N 137
Sbjct: 79 E 79
>1wy0_A Geranylgeranyl pyrophosphate synthetase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI, transferase; 2.20A {Pyrococcus
horikoshii OT3} (A:)
Length = 342
Score = 26.8 bits (58), Expect = 2.2
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 61 SNMSALIERMKRTGRYPLKDGDQKISTSLKPEAYEVY--AGQYYITPKNKKVRPRLVDRH 118
L R+K K D+KI + + V A ++Y K+VRP +V
Sbjct: 2 EKYEELFARIKEK----AKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTS 57
Query: 119 VQEVTENIQEVFYSGCHVNAI 139
+ V + Y + I
Sbjct: 58 TEAVGGDPLRAIYPAVAIELI 78
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium
tumefaciens, structural genomics, PSI-2, protein
structure initiative; 1.60A {Agrobacterium tumefaciens
str} (A:)
Length = 335
Score = 26.1 bits (56), Expect = 3.1
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 98 AGQYYITPKNKKVRPRLVDRHVQEVTENIQEVFYSGCHVNAI 139
A ++ + K++RP LV V + + + + G + +
Sbjct: 76 AMRHGVLNGGKRLRPFLVIESVALLGGDAEAGLHVGAALECL 117
>1v4e_A Octoprenyl-diphosphate synthase; trans-type
prenyltransferase, thermophilic; 2.28A {Thermotoga
maritima} (A:1-124)
Length = 124
Score = 26.0 bits (57), Expect = 3.3
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 82 DQKISTSLKPEAYEVYAGQYYITPKNKKVRPRLV 115
++I L E + K +R RL
Sbjct: 17 KERIEQILSQFFPEQI--MKDLPLYGKMLRVRLS 48
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate
synthase, bisphosphonate, dimethyl allyl pyrophosphate
sulfate, FPPS, transferase; HET: DMA RIS; 1.95A
{Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* (A:1-228)
Length = 228
Score = 26.0 bits (56), Expect = 3.5
Identities = 8/55 (14%), Positives = 13/55 (23%), Gaps = 1/55 (1%)
Query: 61 SNMSALIERMKRTGRYPLKDGDQKISTSLKPEAYEVYAGQYYITPKNKKVRPRLV 115
++M + + L D Q A + K R V
Sbjct: 2 ASMERFLSVYDEVQAF-LLDQLQSKYEIDPNRARYLRIMMDTTCLGGKYFRGMTV 55
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase,
isoprene biosynthesis, multifunctional enzyme,
carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba}
PDB: 2j1o_A (A:)
Length = 293
Score = 25.7 bits (55), Expect = 4.3
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 61 SNMSALIERMKRTGRYPLKDGDQKISTSLKPEAYEVY--AGQYYITPKNKKVRPRLV 115
+ + I + R ++ + +++ A +Y + K+VRP L
Sbjct: 8 HHHTDPISYIIRK----ADSVNKALDSAVPLREPLKIHEAXRYSLLAGGKRVRPVLC 60
>2eg9_A ADP-ribosyl cyclase 1; hydrolase, cell sueface antigen,
structural genomics, NPPSFA, national project on protein
structural and functional analyses; 2.80A {Mus musculus}
(A:1-169)
Length = 169
Score = 25.6 bits (56), Expect = 4.4
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 109 KVRPRLVDRHVQEVTENI---QEVFYSGCHVNAIISVYAYTFQGTKGVTF--TLTGVQFV 163
+ V+ VT+ I + +F+S + YT+ K T TL G ++
Sbjct: 69 DITREDYAPLVKLVTQTIPCDKTLFWSKSK----HLAHQYTWIQGKMFTLEDTLLG--YI 122
Query: 164 KDDTRWGGQLRASSSDFES 182
DD RW G S ++ S
Sbjct: 123 ADDLRWCGDPSTSDMNYVS 141
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene
biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A
{Gallus gallus} (A:1-233)
Length = 233
Score = 25.6 bits (55), Expect = 4.9
Identities = 8/53 (15%), Positives = 12/53 (22%), Gaps = 2/53 (3%)
Query: 63 MSALIERMKRTGRYPLKDGDQKISTSLKPEAYEVYAGQYYITPKNKKVRPRLV 115
+ + R +DG + Y P K R V
Sbjct: 28 REEFVGFFPQIVRDLTEDGIGHPEVGDAVARLK--EVLQYNAPGGKCNRGLTV 78
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl
diphosphate synthase, structural genomics; 1.55A
{Thermus thermophilus HB8} (A:1-192,A:308-330)
Length = 215
Score = 25.1 bits (54), Expect = 6.1
Identities = 6/59 (10%), Positives = 14/59 (23%), Gaps = 1/59 (1%)
Query: 82 DQKISTSLKPEAYEVY-AGQYYITPKNKKVRPRLVDRHVQEVTENIQEVFYSGCHVNAI 139
+++ L Q Y K +R L ++ + +
Sbjct: 13 QERLLARLDHPDPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATALELF 71
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like;
HET: DNA; 2.30A {Escherichia coli} (A:)
Length = 90
Score = 25.1 bits (55), Expect = 6.2
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 44 DKLEQAIREAGEEKFGGSNMSALIERMKRTGRYPLKDGDQKISTSLKP 91
+ ++++E + G + R +RTGR P + KI+ + P
Sbjct: 30 AAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVP 77
>3f6y_A ADP-ribosyl cyclase 1; calcium loaded structure, active site
closure, inhibitory conformation, alternative splicing,
diabetes mellitus; 1.45A {Homo sapiens} PDB: 2o3s_A*
3dzh_A* 2i67_A* 2pgj_A* 3dzf_A* 2i66_A* 3dzg_A* 3dzi_A*
3dzk_A* 3i9m_A* 3i9n_A* 2o3t_A* 2o3q_A* 2i65_A* 2o3u_A*
2pgl_A* 2o3r_A* 2hct_A* 3dzj_A* 1yh3_A ... (A:1-162)
Length = 162
Score = 25.2 bits (55), Expect = 6.3
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 11/79 (13%)
Query: 109 KVRPRLVDRHVQEVTENI---QEVFYSGCHVNAIISVYAYTFQGTKGVTF--TLTGVQFV 163
+ ++ T+ + + + +S + +T T TL G ++
Sbjct: 62 DITEEDYQPLMKLGTQTVPCNKILLWSRIK----DLAHQFTQVQRDMFTLEDTLLG--YL 115
Query: 164 KDDTRWGGQLRASSSDFES 182
DD W G+ S +++S
Sbjct: 116 ADDLTWCGEFDTSKINYQS 134
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.314 0.133 0.378
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,486,151
Number of extensions: 63612
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 16
Length of query: 198
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 114
Effective length of database: 2,116,429
Effective search space: 241272906
Effective search space used: 241272906
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.1 bits)