RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781192|ref|YP_003065605.1| hypothetical protein
CLIBASIA_05495 [Candidatus Liberibacter asiaticus str. psy62]
(198 letters)
>1je5_A Helix-destabilizing protein; OB-fold, beta barrel, DNA binding
protein; 1.90A {Enterobacteria phage T7} SCOP: b.40.4.7
Length = 206
Score = 87.0 bits (215), Expect = 3e-18
Identities = 29/207 (14%), Positives = 59/207 (28%), Gaps = 20/207 (9%)
Query: 1 MAKVLIKG----RLSYPQLHEP-----RAYGDKGDEVYSADILFSKTDNE------QCDK 45
MAK + Y + +P VY D+ D + K
Sbjct: 1 MAKKIFTSALGTAEPYAYIAKPDYGNEERGFGNPRGVYKVDLTIPNKDPRCQRMVDEIVK 60
Query: 46 LEQAIREAGEEKFGGSNMSALIERMKRTGRYPLKDGDQKISTSLKPEAYEVYAGQYYITP 105
+ A E++ + + + + + + Q T
Sbjct: 61 CHEEAYAAAVEEYEANPPAVARGKKPLKPYEGDMPFFDNGDGTTTFKFKCYASFQDKKTK 120
Query: 106 KNKKVRPRLVDRHVQEVTENIQEVFYSGCHVNAIISVYAYTFQG--TKGVTFTLTGVQFV 163
+ K + +VD +++ + + G + S+ Y + V L V V
Sbjct: 121 ETKHINLVVVDSKGKKMED--VPIIGGGSKLKVKYSLVPYKWNTAVGASVKLQLESVMLV 178
Query: 164 KDDTRWGGQLRASSSDFE-SYEEETAS 189
+ T GG+ + E Y ++
Sbjct: 179 ELATFGGGEDDWADEVEENGYVASGSA 205
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 40.7 bits (95), Expect = 2e-04
Identities = 35/242 (14%), Positives = 68/242 (28%), Gaps = 110/242 (45%)
Query: 25 GDEVYS-ADILFSKTDNEQCDKLE------QAIREAGEEKFGGSNMSALIERMKRTGRYP 77
G+++++ A L + D E A R + F + SAL +
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITA-RIMAKRPFDKKSNSALFRAVG------ 150
Query: 78 LKDGDQKISTSLKPEAYEVYAGQ-----Y-------YITPKNKKVRPRLVDRHVQEVTEN 125
+G+ ++ ++ GQ Y Y T LV ++ E
Sbjct: 151 --EGNAQL--------VAIFGGQGNTDDYFEELRDLYQT-----YHV-LVGDLIKFSAET 194
Query: 126 IQEVFYSGCHVNAIISVYAYTFQGTKG-----------------------VTFTLTG-VQ 161
+ E+ ++A V+ T+G ++ L G +Q
Sbjct: 195 LSEL--IRTTLDAE-KVF------TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 162 FVKDDTRW-------G---GQLR-------------------ASSSDFESYEEETASIDE 192
+ G G+LR A + +ES+ +
Sbjct: 246 LA----HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV--SVRKA 299
Query: 193 LE 194
+
Sbjct: 300 IT 301
Score = 36.1 bits (83), Expect = 0.006
Identities = 27/186 (14%), Positives = 51/186 (27%), Gaps = 87/186 (46%)
Query: 46 LEQAIREAGEEKFGG--SNM--------SALIERMKRTGRY-PLKDGDQKISTSL--KPE 92
LE ++ E E G S M + + + +T + P +++ SL +
Sbjct: 324 LEDSL-ENNE----GVPSPMLSISNLTQEQVQDYVNKTNSHLPA---GKQVEISLVNGAK 375
Query: 93 AYEVYAG----------------------QYYITPKNKKVRPRLVDR-----------HV 119
V +G Q I P +++ + + +R +
Sbjct: 376 NL-VVSGPPQSLYGLNLTLRKAKAPSGLDQSRI-PFSER-KLKFSNRFLPVASPFHSHLL 432
Query: 120 QEVTENIQEVFYSGCHVNAI------ISVYAYTFQGTKGVTFTLTGVQFVKDDTRWGGQL 173
++ I + + + I VY DT G L
Sbjct: 433 VPASDLINKDL--VKNNVSFNAKDIQIPVY----------------------DTFDGSDL 468
Query: 174 RASSSD 179
R S
Sbjct: 469 RVLSGS 474
Score = 27.6 bits (61), Expect = 2.2
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 45/123 (36%)
Query: 106 KNKKVRPR--------LVDRHVQEVTENI-QEVFYSGCHVNAIISVYAYTFQGTKGVTFT 156
K K++R +VD ++ TE I +E+ H + YTF+ KG+
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLK--TEKIFKEI---NEHSTS------YTFRSEKGL--- 1725
Query: 157 LTGVQFVK-----------DDTRWGGQLRASSSDFESYE----------EETASIDELEE 195
L+ QF + +D + G + A ++ F + + SI+ L E
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPADAT-FAGHSLGEYAALASLADVMSIESLVE 1784
Query: 196 MPF 198
+ F
Sbjct: 1785 VVF 1787
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase
(NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia
oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A*
1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A*
1qfy_A* 1gaw_A* 1gaq_A* 1sm4_A*
Length = 314
Score = 28.3 bits (62), Expect = 1.1
Identities = 2/31 (6%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 46 LEQAIREAGEEKFGGSNMSALIERMKRTGRY 76
++ + + G + ++K+ ++
Sbjct: 281 IDDIMVSLAAAE--GIDWIEYKRQLKKAEQW 309
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase,
FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB:
3lvb_A* 1jb9_A*
Length = 311
Score = 27.3 bits (60), Expect = 2.3
Identities = 3/30 (10%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 47 EQAIREAGEEKFGGSNMSALIERMKRTGRY 76
+ +++ E + G + + ++K+ ++
Sbjct: 279 QDTLKKVAERR--GESWDQKLAQLKKNKQW 306
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome
P450 reductase, FNR, modular protein, oxidoreductase;
HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1
c.25.1.4 PDB: 1ddi_A*
Length = 374
Score = 26.7 bits (58), Expect = 3.3
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 47 EQAIREAGEEKFGGSNMSA--LIERMKRTGRY 76
EQA+ E E G +A + ++ RY
Sbjct: 338 EQALLEVIAEFGGMDTEAADEFLSELRVERRY 369
>3ik0_A TS, tsase, thymidylate synthase; transferase, nucleotide synthase,
methyltransferase, nucleot biosynthesis; HET: 7C1 UMP;
2.10A {Lactobacillus casei} PDB: 1lcb_A* 1lce_A* 1lca_A*
1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A*
3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A*
1tsz_A 1tdb_A* 1tda_A* ...
Length = 316
Score = 26.6 bits (58), Expect = 3.5
Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 17/143 (11%)
Query: 38 TDNEQCDKLEQAIREAGEEKFGGSNMSALIERMKRTGRYPLKDGDQKISTSLKPEAYEVY 97
+ D ++ ++ M+ +R+ + K GD VY
Sbjct: 97 HGPDMTDFGHRSQKDPEFAAVYHEEMAKFDDRVLHDDAFAAKYGDL----------GLVY 146
Query: 98 AGQYYITPKNKKVRPRLVDRHVQEVTENIQEVFYSGCHVNAIISVYAYTFQGTKGVTFTL 157
Q+ +K + ++ + I+++ I+S + T +
Sbjct: 147 GSQWRAWHTSKG-------DTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMALPPCH 199
Query: 158 TGVQFVKDDTRWGGQLRASSSDF 180
T QF +D + QL S+D
Sbjct: 200 TLYQFYVNDGKLSLQLYQRSADI 222
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 4.7
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 5/20 (25%)
Query: 79 KDGDQKISTSLKPEAYEVYA 98
K +K+ SLK +YA
Sbjct: 19 KQALKKLQASLK-----LYA 33
>1jb9_A Ferredoxin-NADP reductase; electron transport, oxidoreductase; HET:
FAD; 1.70A {Zea mays} SCOP: b.43.4.2 c.25.1.1
Length = 316
Score = 25.9 bits (56), Expect = 5.6
Identities = 3/30 (10%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 47 EQAIREAGEEKFGGSNMSALIERMKRTGRY 76
+ +++ E + G + + ++K+ ++
Sbjct: 284 QDTLKKVAERR--GESWDQKLAQLKKNKQW 311
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural
genomics, PSI, protein structure initiative; 2.00A
{Aquifex aeolicus} SCOP: c.1.10.1
Length = 225
Score = 26.0 bits (57), Expect = 6.2
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 45 KLEQAIR--EAGEEKFGGSNMSALIERMKR 72
LE AI EAG ++ G S+ ++ E +
Sbjct: 186 DLETAISMIEAGADRIGTSSGISIAEEFLK 215
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain,
FAD, NADP+, oxidoreductase; HET: FAD NAP; 1.90A {Rattus
norvegicus} SCOP: b.43.4.1 c.25.1.4
Length = 435
Score = 25.5 bits (55), Expect = 7.5
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 47 EQAIREAGEEKFGGSNMSA--LIERMKRTGRY 76
+AI+ ++ S A I R++ RY
Sbjct: 397 LKAIQRIMTQQGKLSEEDAGVFISRLRDDNRY 428
>3f6y_A ADP-ribosyl cyclase 1; calcium loaded structure, active site
closure, inhibitory conformation, alternative splicing,
diabetes mellitus; 1.45A {Homo sapiens} PDB: 2o3s_A*
3dzh_A* 2i67_A* 2pgj_A* 3dzf_A* 2i66_A* 3dzg_A* 3dzi_A*
3dzk_A* 3i9m_A* 3i9n_A* 2o3t_A* 2o3q_A* 2i65_A* 2o3u_A*
2pgl_A* 2o3r_A* 2hct_A* 3dzj_A* 1yh3_A ...
Length = 262
Score = 25.5 bits (56), Expect = 7.7
Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 110 VRPRLVDRHVQEVTENI---QEVFYSGCHVNAIISVYAYTFQGTKGVTFTLTGVQFVKDD 166
+ ++ T+ + + + +S + + + + + TL G ++ DD
Sbjct: 63 ITEEDYQPLMKLGTQTVPCNKILLWSR--IKDLAHQFTQVQRDMFTLEDTLLG--YLADD 118
Query: 167 TRWGGQLRASSSDFES 182
W G+ S +++S
Sbjct: 119 LTWCGEFDTSKINYQS 134
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase;
HET: FAD; 2.50A {Synechococcus SP}
Length = 402
Score = 25.5 bits (55), Expect = 7.8
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 47 EQAIREAGEEKFGGSNMSALIERMKRTGRY 76
++ E++ G N + MK+ R+
Sbjct: 370 DETFTAEAEKR--GLNWEEMRRSMKKEHRW 397
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; 2.20A {Clostridium
leptum dsm 753}
Length = 78
Score = 25.7 bits (57), Expect = 7.9
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 63 MSALIERMKRTGRYPLKDGDQ-KISTSLKPE 92
+ A ++ Y +K G+ + T+ + E
Sbjct: 42 IGAKVDGRIVPIDYKVKTGEIIDVLTTKELE 72
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI,
protein structure initiative; HET: IPE; 2.00A
{Caulobacter crescentus}
Length = 345
Score = 25.4 bits (55), Expect = 8.9
Identities = 8/53 (15%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 64 SALIERMKRTGRYPLKDGDQKISTSLKPEAYEVY-AGQYYITPKNKKVRPRLV 115
S ++R+ R + ++ I+ ++ + + ++ I K++RP +
Sbjct: 21 SGSVDRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAGGKRLRPLMT 73
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet
cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation,
beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga
maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Length = 348
Score = 25.3 bits (54), Expect = 9.0
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 24 KGDEVYSADILFSKTDNEQCDKLEQAIREAGEE 56
+ ++Y I + D + + I G +
Sbjct: 301 QLYQLYPGKICVFEKDTACIPCVMKMIELLGRK 333
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.314 0.133 0.378
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,684,974
Number of extensions: 73603
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 23
Length of query: 198
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 110
Effective length of database: 3,559,758
Effective search space: 391573380
Effective search space used: 391573380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.1 bits)