RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781192|ref|YP_003065605.1| hypothetical protein CLIBASIA_05495 [Candidatus Liberibacter asiaticus str. psy62] (198 letters) >1je5_A Helix-destabilizing protein; OB-fold, beta barrel, DNA binding protein; 1.90A {Enterobacteria phage T7} SCOP: b.40.4.7 Length = 206 Score = 87.0 bits (215), Expect = 3e-18 Identities = 29/207 (14%), Positives = 59/207 (28%), Gaps = 20/207 (9%) Query: 1 MAKVLIKG----RLSYPQLHEP-----RAYGDKGDEVYSADILFSKTDNE------QCDK 45 MAK + Y + +P VY D+ D + K Sbjct: 1 MAKKIFTSALGTAEPYAYIAKPDYGNEERGFGNPRGVYKVDLTIPNKDPRCQRMVDEIVK 60 Query: 46 LEQAIREAGEEKFGGSNMSALIERMKRTGRYPLKDGDQKISTSLKPEAYEVYAGQYYITP 105 + A E++ + + + + + + Q T Sbjct: 61 CHEEAYAAAVEEYEANPPAVARGKKPLKPYEGDMPFFDNGDGTTTFKFKCYASFQDKKTK 120 Query: 106 KNKKVRPRLVDRHVQEVTENIQEVFYSGCHVNAIISVYAYTFQG--TKGVTFTLTGVQFV 163 + K + +VD +++ + + G + S+ Y + V L V V Sbjct: 121 ETKHINLVVVDSKGKKMED--VPIIGGGSKLKVKYSLVPYKWNTAVGASVKLQLESVMLV 178 Query: 164 KDDTRWGGQLRASSSDFE-SYEEETAS 189 + T GG+ + E Y ++ Sbjct: 179 ELATFGGGEDDWADEVEENGYVASGSA 205 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 40.7 bits (95), Expect = 2e-04 Identities = 35/242 (14%), Positives = 68/242 (28%), Gaps = 110/242 (45%) Query: 25 GDEVYS-ADILFSKTDNEQCDKLE------QAIREAGEEKFGGSNMSALIERMKRTGRYP 77 G+++++ A L + D E A R + F + SAL + Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITA-RIMAKRPFDKKSNSALFRAVG------ 150 Query: 78 LKDGDQKISTSLKPEAYEVYAGQ-----Y-------YITPKNKKVRPRLVDRHVQEVTEN 125 +G+ ++ ++ GQ Y Y T LV ++ E Sbjct: 151 --EGNAQL--------VAIFGGQGNTDDYFEELRDLYQT-----YHV-LVGDLIKFSAET 194 Query: 126 IQEVFYSGCHVNAIISVYAYTFQGTKG-----------------------VTFTLTG-VQ 161 + E+ ++A V+ T+G ++ L G +Q Sbjct: 195 LSEL--IRTTLDAE-KVF------TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245 Query: 162 FVKDDTRW-------G---GQLR-------------------ASSSDFESYEEETASIDE 192 + G G+LR A + +ES+ + Sbjct: 246 LA----HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV--SVRKA 299 Query: 193 LE 194 + Sbjct: 300 IT 301 Score = 36.1 bits (83), Expect = 0.006 Identities = 27/186 (14%), Positives = 51/186 (27%), Gaps = 87/186 (46%) Query: 46 LEQAIREAGEEKFGG--SNM--------SALIERMKRTGRY-PLKDGDQKISTSL--KPE 92 LE ++ E E G S M + + + +T + P +++ SL + Sbjct: 324 LEDSL-ENNE----GVPSPMLSISNLTQEQVQDYVNKTNSHLPA---GKQVEISLVNGAK 375 Query: 93 AYEVYAG----------------------QYYITPKNKKVRPRLVDR-----------HV 119 V +G Q I P +++ + + +R + Sbjct: 376 NL-VVSGPPQSLYGLNLTLRKAKAPSGLDQSRI-PFSER-KLKFSNRFLPVASPFHSHLL 432 Query: 120 QEVTENIQEVFYSGCHVNAI------ISVYAYTFQGTKGVTFTLTGVQFVKDDTRWGGQL 173 ++ I + + + I VY DT G L Sbjct: 433 VPASDLINKDL--VKNNVSFNAKDIQIPVY----------------------DTFDGSDL 468 Query: 174 RASSSD 179 R S Sbjct: 469 RVLSGS 474 Score = 27.6 bits (61), Expect = 2.2 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 45/123 (36%) Query: 106 KNKKVRPR--------LVDRHVQEVTENI-QEVFYSGCHVNAIISVYAYTFQGTKGVTFT 156 K K++R +VD ++ TE I +E+ H + YTF+ KG+ Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLK--TEKIFKEI---NEHSTS------YTFRSEKGL--- 1725 Query: 157 LTGVQFVK-----------DDTRWGGQLRASSSDFESYE----------EETASIDELEE 195 L+ QF + +D + G + A ++ F + + SI+ L E Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPADAT-FAGHSLGEYAALASLADVMSIESLVE 1784 Query: 196 MPF 198 + F Sbjct: 1785 VVF 1787 >1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 1sm4_A* Length = 314 Score = 28.3 bits (62), Expect = 1.1 Identities = 2/31 (6%), Positives = 12/31 (38%), Gaps = 2/31 (6%) Query: 46 LEQAIREAGEEKFGGSNMSALIERMKRTGRY 76 ++ + + G + ++K+ ++ Sbjct: 281 IDDIMVSLAAAE--GIDWIEYKRQLKKAEQW 309 >3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A* Length = 311 Score = 27.3 bits (60), Expect = 2.3 Identities = 3/30 (10%), Positives = 15/30 (50%), Gaps = 2/30 (6%) Query: 47 EQAIREAGEEKFGGSNMSALIERMKRTGRY 76 + +++ E + G + + ++K+ ++ Sbjct: 279 QDTLKKVAERR--GESWDQKLAQLKKNKQW 306 >1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A* Length = 374 Score = 26.7 bits (58), Expect = 3.3 Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%) Query: 47 EQAIREAGEEKFGGSNMSA--LIERMKRTGRY 76 EQA+ E E G +A + ++ RY Sbjct: 338 EQALLEVIAEFGGMDTEAADEFLSELRVERRY 369 >3ik0_A TS, tsase, thymidylate synthase; transferase, nucleotide synthase, methyltransferase, nucleot biosynthesis; HET: 7C1 UMP; 2.10A {Lactobacillus casei} PDB: 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 1tdb_A* 1tda_A* ... Length = 316 Score = 26.6 bits (58), Expect = 3.5 Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 17/143 (11%) Query: 38 TDNEQCDKLEQAIREAGEEKFGGSNMSALIERMKRTGRYPLKDGDQKISTSLKPEAYEVY 97 + D ++ ++ M+ +R+ + K GD VY Sbjct: 97 HGPDMTDFGHRSQKDPEFAAVYHEEMAKFDDRVLHDDAFAAKYGDL----------GLVY 146 Query: 98 AGQYYITPKNKKVRPRLVDRHVQEVTENIQEVFYSGCHVNAIISVYAYTFQGTKGVTFTL 157 Q+ +K + ++ + I+++ I+S + T + Sbjct: 147 GSQWRAWHTSKG-------DTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMALPPCH 199 Query: 158 TGVQFVKDDTRWGGQLRASSSDF 180 T QF +D + QL S+D Sbjct: 200 TLYQFYVNDGKLSLQLYQRSADI 222 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 26.5 bits (57), Expect = 4.7 Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 5/20 (25%) Query: 79 KDGDQKISTSLKPEAYEVYA 98 K +K+ SLK +YA Sbjct: 19 KQALKKLQASLK-----LYA 33 >1jb9_A Ferredoxin-NADP reductase; electron transport, oxidoreductase; HET: FAD; 1.70A {Zea mays} SCOP: b.43.4.2 c.25.1.1 Length = 316 Score = 25.9 bits (56), Expect = 5.6 Identities = 3/30 (10%), Positives = 15/30 (50%), Gaps = 2/30 (6%) Query: 47 EQAIREAGEEKFGGSNMSALIERMKRTGRY 76 + +++ E + G + + ++K+ ++ Sbjct: 284 QDTLKKVAERR--GESWDQKLAQLKKNKQW 311 >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 Length = 225 Score = 26.0 bits (57), Expect = 6.2 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%) Query: 45 KLEQAIR--EAGEEKFGGSNMSALIERMKR 72 LE AI EAG ++ G S+ ++ E + Sbjct: 186 DLETAISMIEAGADRIGTSSGISIAEEFLK 215 >1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidoreductase; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4 Length = 435 Score = 25.5 bits (55), Expect = 7.5 Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%) Query: 47 EQAIREAGEEKFGGSNMSA--LIERMKRTGRY 76 +AI+ ++ S A I R++ RY Sbjct: 397 LKAIQRIMTQQGKLSEEDAGVFISRLRDDNRY 428 >3f6y_A ADP-ribosyl cyclase 1; calcium loaded structure, active site closure, inhibitory conformation, alternative splicing, diabetes mellitus; 1.45A {Homo sapiens} PDB: 2o3s_A* 3dzh_A* 2i67_A* 2pgj_A* 3dzf_A* 2i66_A* 3dzg_A* 3dzi_A* 3dzk_A* 3i9m_A* 3i9n_A* 2o3t_A* 2o3q_A* 2i65_A* 2o3u_A* 2pgl_A* 2o3r_A* 2hct_A* 3dzj_A* 1yh3_A ... Length = 262 Score = 25.5 bits (56), Expect = 7.7 Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 7/76 (9%) Query: 110 VRPRLVDRHVQEVTENI---QEVFYSGCHVNAIISVYAYTFQGTKGVTFTLTGVQFVKDD 166 + ++ T+ + + + +S + + + + + TL G ++ DD Sbjct: 63 ITEEDYQPLMKLGTQTVPCNKILLWSR--IKDLAHQFTQVQRDMFTLEDTLLG--YLADD 118 Query: 167 TRWGGQLRASSSDFES 182 W G+ S +++S Sbjct: 119 LTWCGEFDTSKINYQS 134 >2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP} Length = 402 Score = 25.5 bits (55), Expect = 7.8 Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 2/30 (6%) Query: 47 EQAIREAGEEKFGGSNMSALIERMKRTGRY 76 ++ E++ G N + MK+ R+ Sbjct: 370 DETFTAEAEKR--GLNWEEMRRSMKKEHRW 397 >3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Clostridium leptum dsm 753} Length = 78 Score = 25.7 bits (57), Expect = 7.9 Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 1/31 (3%) Query: 63 MSALIERMKRTGRYPLKDGDQ-KISTSLKPE 92 + A ++ Y +K G+ + T+ + E Sbjct: 42 IGAKVDGRIVPIDYKVKTGEIIDVLTTKELE 72 >3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Length = 345 Score = 25.4 bits (55), Expect = 8.9 Identities = 8/53 (15%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 64 SALIERMKRTGRYPLKDGDQKISTSLKPEAYEVY-AGQYYITPKNKKVRPRLV 115 S ++R+ R + ++ I+ ++ + + ++ I K++RP + Sbjct: 21 SGSVDRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAGGKRLRPLMT 73 >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Length = 348 Score = 25.3 bits (54), Expect = 9.0 Identities = 5/33 (15%), Positives = 12/33 (36%) Query: 24 KGDEVYSADILFSKTDNEQCDKLEQAIREAGEE 56 + ++Y I + D + + I G + Sbjct: 301 QLYQLYPGKICVFEKDTACIPCVMKMIELLGRK 333 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.314 0.133 0.378 Gapped Lambda K H 0.267 0.0524 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,684,974 Number of extensions: 73603 Number of successful extensions: 239 Number of sequences better than 10.0: 1 Number of HSP's gapped: 238 Number of HSP's successfully gapped: 23 Length of query: 198 Length of database: 5,693,230 Length adjustment: 88 Effective length of query: 110 Effective length of database: 3,559,758 Effective search space: 391573380 Effective search space used: 391573380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 54 (25.1 bits)