RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781192|ref|YP_003065605.1| hypothetical protein
CLIBASIA_05495 [Candidatus Liberibacter asiaticus str. psy62]
         (198 letters)



>d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]}
          Length = 197

 Score = 81.6 bits (201), Expect = 4e-17
 Identities = 30/203 (14%), Positives = 57/203 (28%), Gaps = 24/203 (11%)

Query: 1   MAKVLIKG----RLSYPQLHEP-----RAYGDKGDEVYSADILFSKTDNE------QCDK 45
           MAK +          Y  + +P              VY  D+     D        +  K
Sbjct: 1   MAKKIFTSALGTAEPYAYIAKPDYGNEERGFGNPRGVYKVDLTIPNKDPRCQRMVDEIVK 60

Query: 46  LEQAIREAGEEKFGGSNMSALIERMKRTGRYPLKDGDQKISTSLKPEAYEVYAGQYYITP 105
             +    A  E++  +  +    +                  +   +     + Q   T 
Sbjct: 61  CHEEAYAAAVEEYEANPPAVARGKKPLKPYEGDMPFFDNGDGTTTFKFKCYASFQDKKTK 120

Query: 106 KNKKVRPRLVDRHVQEVTENIQEVFYSGCHVNAIISVYAYTFQGTK--GVTFTLTGVQFV 163
           + K +   +VD   +++ +    +   G  +    S+  Y +       V   L  V  V
Sbjct: 121 ETKHINLVVVDSKGKKMED--VPIIGGGSKLKVKYSLVPYKWNTAVGASVKLQLESVMLV 178

Query: 164 KDDTRWGGQLRASSSDFESYEEE 186
           +  T  GG       D+    EE
Sbjct: 179 ELATFGGG-----EDDWADEVEE 196


>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein
           1, N-terminal domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 629

 Score = 27.0 bits (59), Expect = 1.1
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 6   IKGRLSYPQLHEPRAYGDKGDEVYSADI 33
           I G +      EP     KG +V+  DI
Sbjct: 561 IAGTIRIDFEKEPLGVNAKGQQVFLKDI 588


>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein
           {Escherichia coli [TaxId: 562]}
          Length = 153

 Score = 26.7 bits (58), Expect = 1.5
 Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)

Query: 47  EQAIREAGEEKFGGSNMSA--LIERMKRTGRY 76
           EQA+ E   E  G    +A   +  ++   RY
Sbjct: 117 EQALLEVIAEFGGMDTEAADEFLSELRVERRY 148


>d1isia_ c.23.14.3 (A:) Bone marror stromal cell antigen 1,
           BST-1/CD157 (ADP ribosyl cyclase-2) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 250

 Score = 26.7 bits (59), Expect = 1.6
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 109 KVRPRLVDRHVQEVTENI---QEVFYSGCHVNAIISVYAYTFQGTKGVTFTLTGVQFVKD 165
            V P   D  +     +I   + +F+     + +++ +A   +    ++  L G   V D
Sbjct: 51  SVLPSDYDLFITLSRHSIPRDKSLFWEN--SHLLVNSFADNTRRFMPLSDVLYG--RVAD 106

Query: 166 DTRWGGQLRASSSDFESY 183
              W  Q   S  D++S 
Sbjct: 107 FLSWCRQKADSGLDYQSC 124


>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin
           reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}
          Length = 160

 Score = 26.4 bits (57), Expect = 1.8
 Identities = 2/31 (6%), Positives = 12/31 (38%), Gaps = 2/31 (6%)

Query: 46  LEQAIREAGEEKFGGSNMSALIERMKRTGRY 76
           ++  +      +  G +      ++K+  ++
Sbjct: 127 IDDIMVSLAAAE--GIDWIEYKRQLKKAEQW 155


>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin
           reductase) {Maize (Zea mays), root isoform [TaxId:
           4577]}
          Length = 154

 Score = 26.0 bits (56), Expect = 2.2
 Identities = 3/30 (10%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 47  EQAIREAGEEKFGGSNMSALIERMKRTGRY 76
           +  +++  E +  G +    + ++K+  ++
Sbjct: 122 QDTLKKVAERR--GESWDQKLAQLKKNKQW 149


>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin
           reductase) {Cyanobacterium (Anabaena sp.), pcc 7119
           [TaxId: 1167]}
          Length = 162

 Score = 25.3 bits (54), Expect = 3.8
 Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 44  DKLEQAIREAGEEKFGGSNMSALIERMKRTGRY 76
           + ++ A+  A  ++  G   S   + +K+ GR+
Sbjct: 127 EGIDAALSAAAAKE--GVTWSDYQKDLKKAGRW 157


>d2ef1a1 c.23.14.3 (A:45-291) ADP ribosyl cyclase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 247

 Score = 25.1 bits (55), Expect = 3.9
 Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 110 VRPRLVDRHVQEVTENI---QEVFYSGCHVNAIISVYAYTFQGTKGVTFTLTGVQFVKDD 166
           +        ++  T+ +   + + +S   +  +   +    +    +  TL G  ++ DD
Sbjct: 57  ITEEDYQPLMKLGTQTVPCNKILLWSR--IKDLAHQFTQVQRDMFTLEDTLLG--YLADD 112

Query: 167 TRWGGQLRASSSDFES 182
             W G+   S  +++S
Sbjct: 113 LTWCGEFNTSKINYQS 128


>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 739

 Score = 24.8 bits (54), Expect = 4.6
 Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 3/26 (11%)

Query: 167 TRWGGQLRASSSDFESYE---EETAS 189
           TR      A + DFES++   EE   
Sbjct: 17  TRRIWYAIAMAHDFESHDGMTEENLY 42


>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase
           FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 165

 Score = 24.7 bits (53), Expect = 5.0
 Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)

Query: 47  EQAIREAGEEKFGGSNMSA--LIERMKRTGRY 76
            +AI+    ++   S   A   I R++   RY
Sbjct: 127 LKAIQRIMTQQGKLSEEDAGVFISRLRDDNRY 158


>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 743

 Score = 24.8 bits (54), Expect = 5.9
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 167 TRWGGQLRASSSDFESYEEETASI 190
           T W   L A + DF+++  +   I
Sbjct: 33  TTWIWNLHALAHDFDTHTSDLEDI 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 727,641
Number of extensions: 32297
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 17
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.2 bits)