RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781192|ref|YP_003065605.1| hypothetical protein CLIBASIA_05495 [Candidatus Liberibacter asiaticus str. psy62] (198 letters) >d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]} Length = 197 Score = 81.6 bits (201), Expect = 4e-17 Identities = 30/203 (14%), Positives = 57/203 (28%), Gaps = 24/203 (11%) Query: 1 MAKVLIKG----RLSYPQLHEP-----RAYGDKGDEVYSADILFSKTDNE------QCDK 45 MAK + Y + +P VY D+ D + K Sbjct: 1 MAKKIFTSALGTAEPYAYIAKPDYGNEERGFGNPRGVYKVDLTIPNKDPRCQRMVDEIVK 60 Query: 46 LEQAIREAGEEKFGGSNMSALIERMKRTGRYPLKDGDQKISTSLKPEAYEVYAGQYYITP 105 + A E++ + + + + + + Q T Sbjct: 61 CHEEAYAAAVEEYEANPPAVARGKKPLKPYEGDMPFFDNGDGTTTFKFKCYASFQDKKTK 120 Query: 106 KNKKVRPRLVDRHVQEVTENIQEVFYSGCHVNAIISVYAYTFQGTK--GVTFTLTGVQFV 163 + K + +VD +++ + + G + S+ Y + V L V V Sbjct: 121 ETKHINLVVVDSKGKKMED--VPIIGGGSKLKVKYSLVPYKWNTAVGASVKLQLESVMLV 178 Query: 164 KDDTRWGGQLRASSSDFESYEEE 186 + T GG D+ EE Sbjct: 179 ELATFGGG-----EDDWADEVEE 196 >d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 629 Score = 27.0 bits (59), Expect = 1.1 Identities = 9/28 (32%), Positives = 12/28 (42%) Query: 6 IKGRLSYPQLHEPRAYGDKGDEVYSADI 33 I G + EP KG +V+ DI Sbjct: 561 IAGTIRIDFEKEPLGVNAKGQQVFLKDI 588 >d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 153 Score = 26.7 bits (58), Expect = 1.5 Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%) Query: 47 EQAIREAGEEKFGGSNMSA--LIERMKRTGRY 76 EQA+ E E G +A + ++ RY Sbjct: 117 EQALLEVIAEFGGMDTEAADEFLSELRVERRY 148 >d1isia_ c.23.14.3 (A:) Bone marror stromal cell antigen 1, BST-1/CD157 (ADP ribosyl cyclase-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 250 Score = 26.7 bits (59), Expect = 1.6 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 7/78 (8%) Query: 109 KVRPRLVDRHVQEVTENI---QEVFYSGCHVNAIISVYAYTFQGTKGVTFTLTGVQFVKD 165 V P D + +I + +F+ + +++ +A + ++ L G V D Sbjct: 51 SVLPSDYDLFITLSRHSIPRDKSLFWEN--SHLLVNSFADNTRRFMPLSDVLYG--RVAD 106 Query: 166 DTRWGGQLRASSSDFESY 183 W Q S D++S Sbjct: 107 FLSWCRQKADSGLDYQSC 124 >d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 160 Score = 26.4 bits (57), Expect = 1.8 Identities = 2/31 (6%), Positives = 12/31 (38%), Gaps = 2/31 (6%) Query: 46 LEQAIREAGEEKFGGSNMSALIERMKRTGRY 76 ++ + + G + ++K+ ++ Sbjct: 127 IDDIMVSLAAAE--GIDWIEYKRQLKKAEQW 155 >d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 154 Score = 26.0 bits (56), Expect = 2.2 Identities = 3/30 (10%), Positives = 15/30 (50%), Gaps = 2/30 (6%) Query: 47 EQAIREAGEEKFGGSNMSALIERMKRTGRY 76 + +++ E + G + + ++K+ ++ Sbjct: 122 QDTLKKVAERR--GESWDQKLAQLKKNKQW 149 >d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 162 Score = 25.3 bits (54), Expect = 3.8 Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Query: 44 DKLEQAIREAGEEKFGGSNMSALIERMKRTGRY 76 + ++ A+ A ++ G S + +K+ GR+ Sbjct: 127 EGIDAALSAAAAKE--GVTWSDYQKDLKKAGRW 157 >d2ef1a1 c.23.14.3 (A:45-291) ADP ribosyl cyclase {Human (Homo sapiens) [TaxId: 9606]} Length = 247 Score = 25.1 bits (55), Expect = 3.9 Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 7/76 (9%) Query: 110 VRPRLVDRHVQEVTENI---QEVFYSGCHVNAIISVYAYTFQGTKGVTFTLTGVQFVKDD 166 + ++ T+ + + + +S + + + + + TL G ++ DD Sbjct: 57 ITEEDYQPLMKLGTQTVPCNKILLWSR--IKDLAHQFTQVQRDMFTLEDTLLG--YLADD 112 Query: 167 TRWGGQLRASSSDFES 182 W G+ S +++S Sbjct: 113 LTWCGEFNTSKINYQS 128 >d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus [TaxId: 32046]} Length = 739 Score = 24.8 bits (54), Expect = 4.6 Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 3/26 (11%) Query: 167 TRWGGQLRASSSDFESYE---EETAS 189 TR A + DFES++ EE Sbjct: 17 TRRIWYAIAMAHDFESHDGMTEENLY 42 >d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 165 Score = 24.7 bits (53), Expect = 5.0 Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%) Query: 47 EQAIREAGEEKFGGSNMSA--LIERMKRTGRY 76 +AI+ ++ S A I R++ RY Sbjct: 127 LKAIQRIMTQQGKLSEEDAGVFISRLRDDNRY 158 >d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus [TaxId: 32046]} Length = 743 Score = 24.8 bits (54), Expect = 5.9 Identities = 7/24 (29%), Positives = 12/24 (50%) Query: 167 TRWGGQLRASSSDFESYEEETASI 190 T W L A + DF+++ + I Sbjct: 33 TTWIWNLHALAHDFDTHTSDLEDI 56 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.314 0.133 0.378 Gapped Lambda K H 0.267 0.0646 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 727,641 Number of extensions: 32297 Number of successful extensions: 92 Number of sequences better than 10.0: 1 Number of HSP's gapped: 91 Number of HSP's successfully gapped: 17 Length of query: 198 Length of database: 2,407,596 Length adjustment: 81 Effective length of query: 117 Effective length of database: 1,295,466 Effective search space: 151569522 Effective search space used: 151569522 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 50 (23.2 bits)