BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781192|ref|YP_003065605.1| hypothetical protein CLIBASIA_05495 [Candidatus Liberibacter asiaticus str. psy62] (198 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781192|ref|YP_003065605.1| hypothetical protein CLIBASIA_05495 [Candidatus Liberibacter asiaticus str. psy62] Length = 198 Score = 412 bits (1060), Expect = e-117, Method: Compositional matrix adjust. Identities = 198/198 (100%), Positives = 198/198 (100%) Query: 1 MAKVLIKGRLSYPQLHEPRAYGDKGDEVYSADILFSKTDNEQCDKLEQAIREAGEEKFGG 60 MAKVLIKGRLSYPQLHEPRAYGDKGDEVYSADILFSKTDNEQCDKLEQAIREAGEEKFGG Sbjct: 1 MAKVLIKGRLSYPQLHEPRAYGDKGDEVYSADILFSKTDNEQCDKLEQAIREAGEEKFGG 60 Query: 61 SNMSALIERMKRTGRYPLKDGDQKISTSLKPEAYEVYAGQYYITPKNKKVRPRLVDRHVQ 120 SNMSALIERMKRTGRYPLKDGDQKISTSLKPEAYEVYAGQYYITPKNKKVRPRLVDRHVQ Sbjct: 61 SNMSALIERMKRTGRYPLKDGDQKISTSLKPEAYEVYAGQYYITPKNKKVRPRLVDRHVQ 120 Query: 121 EVTENIQEVFYSGCHVNAIISVYAYTFQGTKGVTFTLTGVQFVKDDTRWGGQLRASSSDF 180 EVTENIQEVFYSGCHVNAIISVYAYTFQGTKGVTFTLTGVQFVKDDTRWGGQLRASSSDF Sbjct: 121 EVTENIQEVFYSGCHVNAIISVYAYTFQGTKGVTFTLTGVQFVKDDTRWGGQLRASSSDF 180 Query: 181 ESYEEETASIDELEEMPF 198 ESYEEETASIDELEEMPF Sbjct: 181 ESYEEETASIDELEEMPF 198 >gi|254780126|ref|YP_003064539.1| hypothetical protein CLIBASIA_00025 [Candidatus Liberibacter asiaticus str. psy62] Length = 216 Score = 134 bits (337), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/197 (42%), Positives = 113/197 (57%), Gaps = 9/197 (4%) Query: 1 MAKVLIKGRLSYPQLH-EPRAYGDKGDEV--YSADILFSKTDNEQCDKLEQAIREAGEEK 57 M K+ +KGRLSYP L + R G V Y DI+F K D +Q + +E ++ A E Sbjct: 1 MQKLTVKGRLSYPALDTKVRMKLPDGSSVEHYGCDIVFPKADTKQINAVEACLKTAVTEI 60 Query: 58 FGGSNMSALIE--RMKRTGRYPLKDGDQKISTSLKPEAY-EVYAGQYYITPKNKKVRPRL 114 F + A + R K R L+DGD KI++S KPE Y + Y YI+ KNK V+P L Sbjct: 61 FPNVSPDAFLSAVRSKSESRGVLRDGDAKIASSHKPENYTQTYTDSVYISAKNKYVQPLL 120 Query: 115 VDRHVQEVTENIQEVFYSGCHVNAIISVYAYTFQG--TKGVTFTLTGVQFVKDDTRWGGQ 172 VDR Q V++ +EVFY GC V A +++ AY TKG + TLTGVQF K D RWG Sbjct: 121 VDRQAQPVSDP-REVFYPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFKHDERWGAS 179 Query: 173 LRASSSDFESYEEETAS 189 ++ +S+F+ Y EE S Sbjct: 180 PKSDTSEFKDYGEEQDS 196 >gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 463 Score = 22.7 bits (47), Expect = 4.1, Method: Compositional matrix adjust. Identities = 10/28 (35%), Positives = 16/28 (57%) Query: 159 GVQFVKDDTRWGGQLRASSSDFESYEEE 186 G V++D WG Q + S +F+ EE+ Sbjct: 12 GTMKVQEDRYWGAQAQRSLENFKIGEEK 39 >gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 805 Score = 22.3 bits (46), Expect = 5.4, Method: Compositional matrix adjust. Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 5/31 (16%) Query: 76 YPLKDGDQKISTSLKPEAYEVYAGQYYITPK 106 YPL QKI E ++YA +Y+TP+ Sbjct: 364 YPL--TGQKIRNV---ETIKIYANSHYVTPR 389 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.314 0.133 0.378 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 123,453 Number of Sequences: 1233 Number of extensions: 4845 Number of successful extensions: 16 Number of sequences better than 100.0: 4 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 4 length of query: 198 length of database: 328,796 effective HSP length: 70 effective length of query: 128 effective length of database: 242,486 effective search space: 31038208 effective search space used: 31038208 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 36 (18.5 bits)