HHsearch alignment for GI: 254781193 and conserved domain: COG0349

>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis].
Probab=99.67  E-value=1.1e-15  Score=119.98  Aligned_cols=159  Identities=19%  Similarity=0.178  Sum_probs=117.6

Q ss_pred             CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHH
Q ss_conf             68999814178987000440011279819999999848039999788810437999998638898199973077499999
Q gi|254781193|r    2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK   81 (675)
Q Consensus         2 k~i~lD~ET~~~~dl~~~Gl~~y~~~~~i~~i~~a~~~~~v~~~d~~~~~~~~~~l~~~L~~~~~~kV~HNa~FD~~~L~   81 (675)
T Consensus        18 ~~iAIDTEf~r~--------~t~--~p~LcLIQi~~~e~-~~lIdp~~~~~d~~~l~~Ll~d~~v~KIfHaa~~DL~~l~   86 (361)
T COG0349          18 KAIAIDTEFMRL--------RTY--YPRLCLIQISDGEG-ASLIDPLAGILDLPPLVALLADPNVVKIFHAARFDLEVLL   86 (361)
T ss_pred             CEEEEECCCCCC--------CCC--CCCEEEEEEECCCC-CEEECCCCCCCCCCHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf             807983222466--------436--88337999844888-6686226554666369998628760255025635199999


Q ss_pred             HHCCCCCCCCCEEEHHHHHHHHCCC--CCHHHHHHH-CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             8608998842033168899986789--996898998-2998110043799998620211234332346785853289999
Q gi|254781193|r   82 ACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG  158 (675)
Q Consensus        82 ~~~Gi~i~~~~~~DTmi~A~~l~~~--~sL~~la~~-l~l~~~k~~~~k~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~  158 (675)
T Consensus        87 ~~~g~~--p~plfdTqiAa~l~g~~~~~gl~~Lv~~ll~v~ldK~~q~SDW------------------~~RPL-s~~Ql  145 (361)
T COG0349          87 NLFGLL--PTPLFDTQIAAKLAGFGTSHGLADLVEELLGVELDKSEQRSDW------------------LARPL-SEAQL  145 (361)
T ss_pred             HHCCCC--CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC------------------CCCCC-CHHHH
T ss_conf             861888--7734689999998098632329999999968853644454655------------------55799-99999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHH
Q ss_conf             9989989999999963010400015133666653
Q gi|254781193|r  159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI  192 (675)
Q Consensus       159 ~Ya~~Dv~~t~~L~~~l~~~~~~E~~~~~~~~~m  192 (675)
T Consensus       146 ~YAa~DV~yL~~l~~~L~~~L~~~~r~~~a~~ef  179 (361)
T COG0349         146 EYAAADVEYLLPLYDKLTEELAREGRLEWAEDEF  179 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             9999999999999999999998748549999999