HHsearch alignment for GI: 254781193 and conserved domain: COG0349
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis].
Probab=99.67 E-value=1.1e-15 Score=119.98 Aligned_cols=159 Identities=19% Similarity=0.178 Sum_probs=117.6
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHH
Q ss_conf 68999814178987000440011279819999999848039999788810437999998638898199973077499999
Q gi|254781193|r 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81 (675)
Q Consensus 2 k~i~lD~ET~~~~dl~~~Gl~~y~~~~~i~~i~~a~~~~~v~~~d~~~~~~~~~~l~~~L~~~~~~kV~HNa~FD~~~L~ 81 (675)
T Consensus 18 ~~iAIDTEf~r~--------~t~--~p~LcLIQi~~~e~-~~lIdp~~~~~d~~~l~~Ll~d~~v~KIfHaa~~DL~~l~ 86 (361)
T COG0349 18 KAIAIDTEFMRL--------RTY--YPRLCLIQISDGEG-ASLIDPLAGILDLPPLVALLADPNVVKIFHAARFDLEVLL 86 (361)
T ss_pred CEEEEECCCCCC--------CCC--CCCEEEEEEECCCC-CEEECCCCCCCCCCHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 807983222466--------436--88337999844888-6686226554666369998628760255025635199999
Q ss_pred HHCCCCCCCCCEEEHHHHHHHHCCC--CCHHHHHHH-CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 8608998842033168899986789--996898998-2998110043799998620211234332346785853289999
Q gi|254781193|r 82 ACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 (675)
Q Consensus 82 ~~~Gi~i~~~~~~DTmi~A~~l~~~--~sL~~la~~-l~l~~~k~~~~k~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 158 (675)
T Consensus 87 ~~~g~~--p~plfdTqiAa~l~g~~~~~gl~~Lv~~ll~v~ldK~~q~SDW------------------~~RPL-s~~Ql 145 (361)
T COG0349 87 NLFGLL--PTPLFDTQIAAKLAGFGTSHGLADLVEELLGVELDKSEQRSDW------------------LARPL-SEAQL 145 (361)
T ss_pred HHCCCC--CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC------------------CCCCC-CHHHH
T ss_conf 861888--7734689999998098632329999999968853644454655------------------55799-99999
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHH
Q ss_conf 9989989999999963010400015133666653
Q gi|254781193|r 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192 (675)
Q Consensus 159 ~Ya~~Dv~~t~~L~~~l~~~~~~E~~~~~~~~~m 192 (675)
T Consensus 146 ~YAa~DV~yL~~l~~~L~~~L~~~~r~~~a~~ef 179 (361)
T COG0349 146 EYAAADVEYLLPLYDKLTEELAREGRLEWAEDEF 179 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999999999999998748549999999