HHsearch alignment for GI: 254781193 and conserved domain: COG2176

>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair].
Probab=98.67  E-value=5.4e-08  Score=70.14  Aligned_cols=66  Identities=26%  Similarity=0.316  Sum_probs=49.0

Q ss_pred             HHHHHHHHCCCCCEEEEEEHHHHHHHHHHH---CCCCCCCCCEEEHHHHHHHHCC---CCCHHHHHHHCCCCCC
Q ss_conf             799999863889819997307749999986---0899884203316889998678---9996898998299811
Q gi|254781193|r   54 PQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQ  121 (675)
Q Consensus        54 ~~~l~~~L~~~~~~kV~HNa~FD~~~L~~~---~Gi~i~~~~~~DTmi~A~~l~~---~~sL~~la~~l~l~~~  121 (675)
T Consensus       492 L~kf~~~~~--d~IlVAHNasFD~gFl~~~~~k~~~~~~~~pvIDTL~lar~L~P~~ksh~Lg~l~kk~~v~le  563 (1444)
T COG2176         492 LEKFREFIG--DSILVAHNASFDMGFLNTNYEKYGLEPLTNPVIDTLELARALNPEFKSHRLGTLCKKLGVELE  563 (1444)
T ss_pred             HHHHHHHHC--CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHCCHHHHHHHHCCCHH
T ss_conf             999999844--858996167556457888899838851027501199999875745432466778887486378