HHsearch alignment for GI: 254781193 and conserved domain: COG2176
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair].
Probab=98.67 E-value=5.4e-08 Score=70.14 Aligned_cols=66 Identities=26% Similarity=0.316 Sum_probs=49.0
Q ss_pred HHHHHHHHCCCCCEEEEEEHHHHHHHHHHH---CCCCCCCCCEEEHHHHHHHHCC---CCCHHHHHHHCCCCCC
Q ss_conf 799999863889819997307749999986---0899884203316889998678---9996898998299811
Q gi|254781193|r 54 PQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQ 121 (675)
Q Consensus 54 ~~~l~~~L~~~~~~kV~HNa~FD~~~L~~~---~Gi~i~~~~~~DTmi~A~~l~~---~~sL~~la~~l~l~~~ 121 (675)
T Consensus 492 L~kf~~~~~--d~IlVAHNasFD~gFl~~~~~k~~~~~~~~pvIDTL~lar~L~P~~ksh~Lg~l~kk~~v~le 563 (1444)
T COG2176 492 LEKFREFIG--DSILVAHNASFDMGFLNTNYEKYGLEPLTNPVIDTLELARALNPEFKSHRLGTLCKKLGVELE 563 (1444)
T ss_pred HHHHHHHHC--CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHCCHHHHHHHHCCCHH
T ss_conf 999999844--858996167556457888899838851027501199999875745432466778887486378