HHsearch alignment for GI: 254781193 and conserved domain: PRK05755
>PRK05755 DNA polymerase I; Provisional.
Probab=100.00 E-value=0 Score=912.44 Aligned_cols=538 Identities=22% Similarity=0.258 Sum_probs=461.9
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCEEEEEEECCCCH-----HHHHHHHHHHCCCCCEEEEEEHHHH
Q ss_conf 68999814178987000440011279819999999848039999788810-----4379999986388981999730774
Q gi|254781193|r 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-----VMPQVLKEALENTDVTIVAHNSYFE 76 (675)
Q Consensus 2 k~i~lD~ET~~~~dl~~~Gl~~y~~~~~i~~i~~a~~~~~v~~~d~~~~~-----~~~~~l~~~L~~~~~~kV~HNa~FD 76 (675)
T Consensus 320 ~~va~dtEttsld~----------~~a~lVGis~s~~~g~a~YIPl~~~~~~~~~~vl~~Lk~lLed~~i~KIghNlK~d 389 (889)
T PRK05755 320 GLVAFDTETTSLDP----------MSANLVGLSFAVEEGEAAYIPLAHDDQLDRDDALAALKPLLEDPAIPKVGQNLKYD 389 (889)
T ss_pred CEEEEEEECCCCCC----------CCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEECHHHH
T ss_conf 84999984178875----------65762599998279968998444313368899999999997098872432031899
Q ss_pred HHHHHHHCCCCCCCCCEEEHHHHHHHHCC---CCCHHHHHHHC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 99999860899884203316889998678---99968989982-998110043799998620211234332346785853
Q gi|254781193|r 77 RTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 (675)
Q Consensus 77 ~~~L~~~~Gi~i~~~~~~DTmi~A~~l~~---~~sL~~la~~l-~l~~~k~~~~k~l~~~~~k~~~~~~~~~~~~~~~~~ 152 (675)
T Consensus 390 l~vL~~~-GI~l~-g~~fDTmLAaYLLdP~~~~~~Ld~La~~yL~~~~~~~---eel~---gkg--------~~~~~~~v 453 (889)
T PRK05755 390 RHILANY-GIELR-GIAFDTMLASYLLDPGAGRHDLDSLAERYLGHKTISF---EEVA---GKG--------NQLTFAQV 453 (889)
T ss_pred HHHHHHC-CEECC-CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCH---HHHC---CCC--------CCCCCCCC
T ss_conf 9999977-92357-7630199999874788776778999998632344203---4313---656--------55661007
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCH----------HCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 289999998998999999996301040----------0015133666653115621379999999999999999999999
Q gi|254781193|r 153 AWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 (675)
Q Consensus 153 ~~~~~~~Ya~~Dv~~t~~L~~~l~~~~----------~~E~~~~~~~~~me~~Gi~vD~e~l~~l~~~~~~~~~~l~~~i 222 (675)
T Consensus 454 ~~e~~~~YaaedA~~~~~L~~~L~~~L~~~~l~~Ly~~IE~PLi~VLa~ME~~GI~VD~~~L~~ls~el~~~l~~le~~I 533 (889)
T PRK05755 454 ALEEAAEYAAEDADVTLRLHQVLKPELEEEGLLELYEEIELPLVPVLARMERNGIKVDREYLEELSAELAQRLAELEQEI 533 (889)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87899999999886899999999999986047889999875199999999960868669999999999999999999999
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC---CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9872885476788799988777755888888988---5338998721304823899999999976551013357887408
Q gi|254781193|r 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 (675)
Q Consensus 223 ~~~~~~~~~n~~S~~ql~~~L~~~lg~~~~~~~k---~t~~~~L~~~~~~~~~~~~~l~~r~~~~k~~~~~~~~~~~~~~ 299 (675)
T Consensus 534 ~~~-aG~eFNinSPKQL~~iLFekL~Lp~~KKTKtGySTd~~vLe~L~~~hpi~~~iLeyR-~l~KL~sTYvd~L~~~i~ 611 (889)
T PRK05755 534 YEL-AGEEFNLNSPKQLGEILFEKLGLPVTKKTKTGYSTDAEVLEKLADDHPIPKKILEYR-QLSKLKSTYTDGLPKMIN 611 (889)
T ss_pred HHH-CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHHHHHHCCC
T ss_conf 987-499037799899999999853999788788988785999999875076999999997-787888889888875247
Q ss_pred CC-CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHEEEECCCCCEEEE
Q ss_conf 68-96767788400013221124788844488888651134554310123333455443210033330126689878999
Q gi|254781193|r 300 SD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378 (675)
Q Consensus 300 ~d-gRih~~~~~~gat~TGR~S~~~pNlQnlPr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~~f~a~~G~~lv~ 378 (675)
T Consensus 612 ~~tgRIHt~f~Q~~-t~TGRLSS~~PNLQNIPir~e~Gr~-------------------------IR~aFva~~g~~l~s 665 (889)
T PRK05755 612 PDTGRVHTSFNQAV-TATGRLSSSDPNLQNIPIRTEEGRR-------------------------IRQAFVAPEGYKLLS 665 (889)
T ss_pred CCCCEEECCHHHHH-CCCCCCCCCCCCCCCCCCCCHHHHH-------------------------HHHEEEECCCCEEEE
T ss_conf 88984611001110-3202224799853468776323044-------------------------552278589988999
Q ss_pred EECCCCCHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHCCCCHHHHCCHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCC
Q ss_conf 83453723333231146201134541133101014764487956706201110165202100288888899879870888
Q gi|254781193|r 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 (675)
Q Consensus 379 aDySqiElRvlA~ls~d~~l~~af~~g~D~h~~tA~~~~g~~~~~~~~~~R~~aK~~~~g~~YG~G~~~l~~~~~~~G~~ 458 (675)
T Consensus 666 aDYSQIELRilAh~S~D~~li~af~~g~DiH~~tA~~vf~v~~~~vt~~~R~~AK~vnfGiiYG~s~~gLs~-------- 737 (889)
T PRK05755 666 ADYSQIELRILAHLSGDEGLIEAFAEGEDIHTATASEVFGVPLEEVTSEQRRRAKAINFGLIYGMSAFGLAR-------- 737 (889)
T ss_pred ECHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHEEEHHHHCCCHHHHHH--------
T ss_conf 512089999999980899999998559986899999993999001899998662613221444668778998--------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCEEE
Q ss_conf 31134556555455556788889999887643100010220788899999999878878999999999999997549179
Q gi|254781193|r 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 (675)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~~~~r~~~p~i~~~~~~~~~~~~~~~~~~~~~ 538 (675)
T Consensus 738 ------------------------------------~l~is~~eA~~~i~~yf~~yp~v~~~~~~~~~~a~~---~---- 774 (889)
T PRK05755 738 ------------------------------------QLGISRKEAKEYIDRYFERYPGVKEYMEETVAQAKE---K---- 774 (889)
T ss_pred ------------------------------------HHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---C----
T ss_conf ------------------------------------819999999999999999681099999999999997---7----
Q ss_pred EECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 62154211332223445640232476631016786621021010023456777531456554536889999999999999
Q gi|254781193|r 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 (675)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~p~GR~~~~~~~~~~~~~~~~~~~~~~r~~~~~~k~~n~~iQgtaadi~k~ami~l~ 618 (675)
T Consensus 775 -------------------Gyv~Tl~gRrr~~p~i~s~n~~~r~~---~eR~------AiN~pIQGsAADiiK~AMi~v~ 826 (889)
T PRK05755 775 -------------------GYVETLFGRRRYLPDINSSNGARRAF---AERA------AINAPIQGSAADIIKIAMIRVD 826 (889)
T ss_pred -------------------CCEECCCCCEEECCCCCCCCHHHHHH---HHHH------HHCCCCCHHHHHHHHHHHHHHH
T ss_conf -------------------97778778705278677899889989---9999------9675655569999999999999
Q ss_pred H-----CCCCEEEEECCEEEEECCCCHHHHH-HHHHHHHCCCCHHCCCCCCEEEECCCCCCC
Q ss_conf 6-----7981889952589997792489999-999998456520215995157401004631
Q gi|254781193|r 619 K-----AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 (675)
Q Consensus 619 ~-----~g~~ivl~VHDEiv~evp~~~~~~~-~~i~~~M~~~~~w~~~~pl~ae~~~~~~y~ 674 (675)
T Consensus 827 ~~l~~~~~~~~llQVHDEli~Ev~~~~~e~~~~~v~~~Me~a~~--l~VPl~v~~~~g~nW~ 886 (889)
T PRK05755 827 DALKEGLKARMLLQVHDELVFEVPEDELEEVKKLVKEVMENAVE--LSVPLVVDVGVGDNWD 886 (889)
T ss_pred HHHHHCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHCCEE--CCCCEEEECCCCCCHH
T ss_conf 99984778738998655777842788999999999999718500--7887586238168967