HHsearch alignment for GI: 254781193 and conserved domain: PRK05755

>PRK05755 DNA polymerase I; Provisional.
Probab=100.00  E-value=0  Score=912.44  Aligned_cols=538  Identities=22%  Similarity=0.258  Sum_probs=461.9

Q ss_pred             CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCEEEEEEECCCCH-----HHHHHHHHHHCCCCCEEEEEEHHHH
Q ss_conf             68999814178987000440011279819999999848039999788810-----4379999986388981999730774
Q gi|254781193|r    2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-----VMPQVLKEALENTDVTIVAHNSYFE   76 (675)
Q Consensus         2 k~i~lD~ET~~~~dl~~~Gl~~y~~~~~i~~i~~a~~~~~v~~~d~~~~~-----~~~~~l~~~L~~~~~~kV~HNa~FD   76 (675)
T Consensus       320 ~~va~dtEttsld~----------~~a~lVGis~s~~~g~a~YIPl~~~~~~~~~~vl~~Lk~lLed~~i~KIghNlK~d  389 (889)
T PRK05755        320 GLVAFDTETTSLDP----------MSANLVGLSFAVEEGEAAYIPLAHDDQLDRDDALAALKPLLEDPAIPKVGQNLKYD  389 (889)
T ss_pred             CEEEEEEECCCCCC----------CCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEECHHHH
T ss_conf             84999984178875----------65762599998279968998444313368899999999997098872432031899


Q ss_pred             HHHHHHHCCCCCCCCCEEEHHHHHHHHCC---CCCHHHHHHHC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf             99999860899884203316889998678---99968989982-998110043799998620211234332346785853
Q gi|254781193|r   77 RTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE  152 (675)
Q Consensus        77 ~~~L~~~~Gi~i~~~~~~DTmi~A~~l~~---~~sL~~la~~l-~l~~~k~~~~k~l~~~~~k~~~~~~~~~~~~~~~~~  152 (675)
T Consensus       390 l~vL~~~-GI~l~-g~~fDTmLAaYLLdP~~~~~~Ld~La~~yL~~~~~~~---eel~---gkg--------~~~~~~~v  453 (889)
T PRK05755        390 RHILANY-GIELR-GIAFDTMLASYLLDPGAGRHDLDSLAERYLGHKTISF---EEVA---GKG--------NQLTFAQV  453 (889)
T ss_pred             HHHHHHC-CEECC-CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCH---HHHC---CCC--------CCCCCCCC
T ss_conf             9999977-92357-7630199999874788776778999998632344203---4313---656--------55661007


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCH----------HCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             289999998998999999996301040----------0015133666653115621379999999999999999999999
Q gi|254781193|r  153 AWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL  222 (675)
Q Consensus       153 ~~~~~~~Ya~~Dv~~t~~L~~~l~~~~----------~~E~~~~~~~~~me~~Gi~vD~e~l~~l~~~~~~~~~~l~~~i  222 (675)
T Consensus       454 ~~e~~~~YaaedA~~~~~L~~~L~~~L~~~~l~~Ly~~IE~PLi~VLa~ME~~GI~VD~~~L~~ls~el~~~l~~le~~I  533 (889)
T PRK05755        454 ALEEAAEYAAEDADVTLRLHQVLKPELEEEGLLELYEEIELPLVPVLARMERNGIKVDREYLEELSAELAQRLAELEQEI  533 (889)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             87899999999886899999999999986047889999875199999999960868669999999999999999999999


Q ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC---CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9872885476788799988777755888888988---5338998721304823899999999976551013357887408
Q gi|254781193|r  223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN  299 (675)
Q Consensus       223 ~~~~~~~~~n~~S~~ql~~~L~~~lg~~~~~~~k---~t~~~~L~~~~~~~~~~~~~l~~r~~~~k~~~~~~~~~~~~~~  299 (675)
T Consensus       534 ~~~-aG~eFNinSPKQL~~iLFekL~Lp~~KKTKtGySTd~~vLe~L~~~hpi~~~iLeyR-~l~KL~sTYvd~L~~~i~  611 (889)
T PRK05755        534 YEL-AGEEFNLNSPKQLGEILFEKLGLPVTKKTKTGYSTDAEVLEKLADDHPIPKKILEYR-QLSKLKSTYTDGLPKMIN  611 (889)
T ss_pred             HHH-CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHHHHHHCCC
T ss_conf             987-499037799899999999853999788788988785999999875076999999997-787888889888875247


Q ss_pred             CC-CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHEEEECCCCCEEEE
Q ss_conf             68-96767788400013221124788844488888651134554310123333455443210033330126689878999
Q gi|254781193|r  300 SD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV  378 (675)
Q Consensus       300 ~d-gRih~~~~~~gat~TGR~S~~~pNlQnlPr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~~f~a~~G~~lv~  378 (675)
T Consensus       612 ~~tgRIHt~f~Q~~-t~TGRLSS~~PNLQNIPir~e~Gr~-------------------------IR~aFva~~g~~l~s  665 (889)
T PRK05755        612 PDTGRVHTSFNQAV-TATGRLSSSDPNLQNIPIRTEEGRR-------------------------IRQAFVAPEGYKLLS  665 (889)
T ss_pred             CCCCEEECCHHHHH-CCCCCCCCCCCCCCCCCCCCHHHHH-------------------------HHHEEEECCCCEEEE
T ss_conf             88984611001110-3202224799853468776323044-------------------------552278589988999


Q ss_pred             EECCCCCHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHCCCCHHHHCCHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCC
Q ss_conf             83453723333231146201134541133101014764487956706201110165202100288888899879870888
Q gi|254781193|r  379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN  458 (675)
Q Consensus       379 aDySqiElRvlA~ls~d~~l~~af~~g~D~h~~tA~~~~g~~~~~~~~~~R~~aK~~~~g~~YG~G~~~l~~~~~~~G~~  458 (675)
T Consensus       666 aDYSQIELRilAh~S~D~~li~af~~g~DiH~~tA~~vf~v~~~~vt~~~R~~AK~vnfGiiYG~s~~gLs~--------  737 (889)
T PRK05755        666 ADYSQIELRILAHLSGDEGLIEAFAEGEDIHTATASEVFGVPLEEVTSEQRRRAKAINFGLIYGMSAFGLAR--------  737 (889)
T ss_pred             ECHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHEEEHHHHCCCHHHHHH--------
T ss_conf             512089999999980899999998559986899999993999001899998662613221444668778998--------


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCEEE
Q ss_conf             31134556555455556788889999887643100010220788899999999878878999999999999997549179
Q gi|254781193|r  459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI  538 (675)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~~~~r~~~p~i~~~~~~~~~~~~~~~~~~~~~  538 (675)
T Consensus       738 ------------------------------------~l~is~~eA~~~i~~yf~~yp~v~~~~~~~~~~a~~---~----  774 (889)
T PRK05755        738 ------------------------------------QLGISRKEAKEYIDRYFERYPGVKEYMEETVAQAKE---K----  774 (889)
T ss_pred             ------------------------------------HHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---C----
T ss_conf             ------------------------------------819999999999999999681099999999999997---7----


Q ss_pred             EECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             62154211332223445640232476631016786621021010023456777531456554536889999999999999
Q gi|254781193|r  539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT  618 (675)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~p~GR~~~~~~~~~~~~~~~~~~~~~~r~~~~~~k~~n~~iQgtaadi~k~ami~l~  618 (675)
T Consensus       775 -------------------Gyv~Tl~gRrr~~p~i~s~n~~~r~~---~eR~------AiN~pIQGsAADiiK~AMi~v~  826 (889)
T PRK05755        775 -------------------GYVETLFGRRRYLPDINSSNGARRAF---AERA------AINAPIQGSAADIIKIAMIRVD  826 (889)
T ss_pred             -------------------CCEECCCCCEEECCCCCCCCHHHHHH---HHHH------HHCCCCCHHHHHHHHHHHHHHH
T ss_conf             -------------------97778778705278677899889989---9999------9675655569999999999999


Q ss_pred             H-----CCCCEEEEECCEEEEECCCCHHHHH-HHHHHHHCCCCHHCCCCCCEEEECCCCCCC
Q ss_conf             6-----7981889952589997792489999-999998456520215995157401004631
Q gi|254781193|r  619 K-----AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR  674 (675)
Q Consensus       619 ~-----~g~~ivl~VHDEiv~evp~~~~~~~-~~i~~~M~~~~~w~~~~pl~ae~~~~~~y~  674 (675)
T Consensus       827 ~~l~~~~~~~~llQVHDEli~Ev~~~~~e~~~~~v~~~Me~a~~--l~VPl~v~~~~g~nW~  886 (889)
T PRK05755        827 DALKEGLKARMLLQVHDELVFEVPEDELEEVKKLVKEVMENAVE--LSVPLVVDVGVGDNWD  886 (889)
T ss_pred             HHHHHCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHCCEE--CCCCEEEECCCCCCHH
T ss_conf             99984778738998655777842788999999999999718500--7887586238168967