HHsearch alignment for GI: 254781193 and conserved domain: PRK05762
>PRK05762 DNA polymerase II; Reviewed.
Probab=98.57 E-value=4.2e-06 Score=57.93 Aligned_cols=156 Identities=17% Similarity=0.239 Sum_probs=80.7
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHCCCC-EEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHC--CCCCEEEEEEH-HHHH
Q ss_conf 689998141789870004400112798-1999999984803999978881043799999863--88981999730-7749
Q gi|254781193|r 2 ATLFIDFETRSPIDLTKCGICKYAEDV-CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE--NTDVTIVAHNS-YFER 77 (675)
Q Consensus 2 k~i~lD~ET~~~~dl~~~Gl~~y~~~~-~i~~i~~a~~~~~v~~~d~~~~~~~~~~l~~~L~--~~~~~kV~HNa-~FD~ 77 (675)
T Consensus 156 rvlSfDIEc~~~g~ii~I~l~--~~~~~~v~~~g~~~~~~~v~~--~~~E~eLL~~F~~~i~~~DPDII-~GyNi~~FDl 230 (785)
T PRK05762 156 KVVSLDIETSNKGELYSIGLE--GCGQRQVYMLGEANGDAELEY--VADEKALLERFNAWFAEFDPDVI-IGWNVVQFDL 230 (785)
T ss_pred EEEEEEEEECCCCCEEEEEEC--CCCCCEEEEECCCCCCCEEEE--ECCHHHHHHHHHHHHHHHCCCEE-EECCCCCCCH
T ss_conf 699999897799988999951--799846899668899853899--09999999999999998599989-9627478777
Q ss_pred HHHHH---HCCCCCCC------------------------CC-EEEHHHHHHH--HC-CCCCHHHHHHHCCCCCCHHHHH
Q ss_conf 99998---60899884------------------------20-3316889998--67-8999689899829981100437
Q gi|254781193|r 78 TVLKA---CFNLDIPI------------------------HR-WICTLVLARS--NG-LPSALKAVGEALKLSSQKMEEG 126 (675)
Q Consensus 78 ~~L~~---~~Gi~i~~------------------------~~-~~DTmi~A~~--l~-~~~sL~~la~~l~l~~~k~~~~ 126 (675)
T Consensus 231 pyL~~Ra~~~gi~l~lgR~~~~~~~~~~~~~~~~~~~~i~GRv~iD~~~~~k~~~~~l~sYsL~~Va~~~-Lge~K~~~~ 309 (785)
T PRK05762 231 RLLQERAERYGIPLRLGRGGSELSWRVHGHKRGHFFASVPGRLVLDGIDALKSAFYEFKSFSLENVAQEL-LGEGKAIDN 309 (785)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCEEEEEEEEEEEEEEHHHHHHHHHCCCCCCHHHHHHHH-HCCCCCCCC
T ss_conf 9999999994998546878886533315655660599984289997099998752036766299999998-544555566
Q ss_pred -HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf -99998620211234332346785853289999998998999999996301
Q gi|254781193|r 127 -KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 (675)
Q Consensus 127 -k~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~t~~L~~~l~ 176 (675)
T Consensus 310 ~~~r~~eI~----------~~---~~~~r~~l~~Y~l~Da~L~~~L~~kl~ 347 (785)
T PRK05762 310 PYDRMDEID----------RY---FADDKPALAKYNLKDCELVTRIFEKTE 347 (785)
T ss_pred HHHHHHHHH----------HH---HHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 666688889----------98---854689999999999999999999870