HHsearch alignment for GI: 254781193 and conserved domain: PRK06807
>PRK06807 DNA polymerase III subunit epsilon; Validated.
Probab=99.30 E-value=1.2e-10 Score=87.33 Aligned_cols=87 Identities=21% Similarity=0.290 Sum_probs=63.7
Q ss_pred HHHHHHCCCCCEEEEEEHHHHHHHHHH---HCCCCCCCCCEEEHHHHHHHHCC---CCCHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 999986388981999730774999998---60899884203316889998678---999689899829981100437999
Q gi|254781193|r 56 VLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKEL 129 (675)
Q Consensus 56 ~l~~~L~~~~~~kV~HNa~FD~~~L~~---~~Gi~i~~~~~~DTmi~A~~l~~---~~sL~~la~~l~l~~~k~~~~k~l 129 (675)
T Consensus 81 ~f~~Fi~--d~iLVAHNA~FD~~FL~~~L~r~gl~~~~n~~IDTL~LAR~l~P~L~NhKLnTVa~~LgI~l~-------- 150 (313)
T PRK06807 81 LFLAFLH--TNVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLS-------- 150 (313)
T ss_pred HHHHHCC--CCEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHCCCCCCCCHHHHHHHHCCCCC--------
T ss_conf 9998738--998999553661999999999749988899877659999986478765667899998399834--------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 986202112343323467858532899999989989999999963010400
Q gi|254781193|r 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 (675)
Q Consensus 130 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~t~~L~~~l~~~~~ 180 (675)
T Consensus 151 ----------------------------HHrAldDA~acAeI~~k~~~~~~ 173 (313)
T PRK06807 151 ----------------------------SHNAFDDCITCAAVYQKCASIEE 173 (313)
T ss_pred ----------------------------CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf ----------------------------36717789999999999999886