HHsearch alignment for GI: 254781193 and conserved domain: PRK08074

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=99.27  E-value=2.1e-10  Score=85.79  Aligned_cols=108  Identities=21%  Similarity=0.165  Sum_probs=70.9

Q ss_pred             CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEE-CCEEEE-EE--ECCCCHHH------------------------
Q ss_conf             689998141789870004400112798199999998-480399-99--78881043------------------------
Q gi|254781193|r    2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF-DDHPVE-LW--DCVHDPVM------------------------   53 (675)
Q Consensus         2 k~i~lD~ET~~~~dl~~~Gl~~y~~~~~i~~i~~a~-~~~~v~-~~--d~~~~~~~------------------------   53 (675)
T Consensus         4 ~~~vvDlETTG--------~~~~-~~d~IIqig~v~i~~~~i~~~f~t~vnP~~~iP~~I~~LTgI~~~~v~~AP~f~ev   74 (932)
T PRK08074          4 RFVVVDLETTG--------NSPK-KGDKIIQIAAVVVEDGEILERFSTFVNPERPIPPFITELTGISEEMVKNAPLFEDV   74 (932)
T ss_pred             EEEEEEEECCC--------CCCC-CCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHCCCCHHHHCCCCCHHHH
T ss_conf             08999988889--------8977-79889999799999999989985325899989977886069898998059998999


Q ss_pred             HHHHHHHHCCCCCEEEEEEHHHHHHHHHHHC---CCCCCCCCEEEHHHHHHHHCC---CCCHHHHHHHCCCCC
Q ss_conf             7999998638898199973077499999860---899884203316889998678---999689899829981
Q gi|254781193|r   54 PQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSS  120 (675)
Q Consensus        54 ~~~l~~~L~~~~~~kV~HNa~FD~~~L~~~~---Gi~i~~~~~~DTmi~A~~l~~---~~sL~~la~~l~l~~  120 (675)
T Consensus        75 a~~i~~~l~--~~~~VaHNv~FD~~FL~~~l~~~G~~~~~~~~~DTveLa~i~~P~~~sy~L~~L~~~l~i~~  145 (932)
T PRK08074         75 APMIVELLE--GAYFVAHNVHFDLNFLNEELERAGYTEIHCPKLDTVELARILLPTADSYKLSDLSEELELEH  145 (932)
T ss_pred             HHHHHHHHC--CCEEEECCHHHHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHCCCCCCCCHHHHHHHCCCCC
T ss_conf             999999966--99599478054099999999973998666876519999999778878888899998649999