HHsearch alignment for GI: 254781193 and conserved domain: PRK08074
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=99.27 E-value=2.1e-10 Score=85.79 Aligned_cols=108 Identities=21% Similarity=0.165 Sum_probs=70.9
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEE-CCEEEE-EE--ECCCCHHH------------------------
Q ss_conf 689998141789870004400112798199999998-480399-99--78881043------------------------
Q gi|254781193|r 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF-DDHPVE-LW--DCVHDPVM------------------------ 53 (675)
Q Consensus 2 k~i~lD~ET~~~~dl~~~Gl~~y~~~~~i~~i~~a~-~~~~v~-~~--d~~~~~~~------------------------ 53 (675)
T Consensus 4 ~~~vvDlETTG--------~~~~-~~d~IIqig~v~i~~~~i~~~f~t~vnP~~~iP~~I~~LTgI~~~~v~~AP~f~ev 74 (932)
T PRK08074 4 RFVVVDLETTG--------NSPK-KGDKIIQIAAVVVEDGEILERFSTFVNPERPIPPFITELTGISEEMVKNAPLFEDV 74 (932)
T ss_pred EEEEEEEECCC--------CCCC-CCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHCCCCHHHHCCCCCHHHH
T ss_conf 08999988889--------8977-79889999799999999989985325899989977886069898998059998999
Q ss_pred HHHHHHHHCCCCCEEEEEEHHHHHHHHHHHC---CCCCCCCCEEEHHHHHHHHCC---CCCHHHHHHHCCCCC
Q ss_conf 7999998638898199973077499999860---899884203316889998678---999689899829981
Q gi|254781193|r 54 PQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSS 120 (675)
Q Consensus 54 ~~~l~~~L~~~~~~kV~HNa~FD~~~L~~~~---Gi~i~~~~~~DTmi~A~~l~~---~~sL~~la~~l~l~~ 120 (675)
T Consensus 75 a~~i~~~l~--~~~~VaHNv~FD~~FL~~~l~~~G~~~~~~~~~DTveLa~i~~P~~~sy~L~~L~~~l~i~~ 145 (932)
T PRK08074 75 APMIVELLE--GAYFVAHNVHFDLNFLNEELERAGYTEIHCPKLDTVELARILLPTADSYKLSDLSEELELEH 145 (932)
T ss_pred HHHHHHHHC--CCEEEECCHHHHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHCCCCCCCCHHHHHHHCCCCC
T ss_conf 999999966--99599478054099999999973998666876519999999778878888899998649999