HHsearch alignment for GI: 254781193 and conserved domain: PRK09145
>PRK09145 DNA polymerase III subunit epsilon; Validated.
Probab=99.06 E-value=1e-08 Score=74.78 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=75.7
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEE-EECCEEE-----EEEECCCC---------------------H---
Q ss_conf 6899981417898700044001127981999999-9848039-----99978881---------------------0---
Q gi|254781193|r 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHPV-----ELWDCVHD---------------------P--- 51 (675)
Q Consensus 2 k~i~lD~ET~~~~dl~~~Gl~~y~~~~~i~~i~~-a~~~~~v-----~~~d~~~~---------------------~--- 51 (675)
T Consensus 30 ~fVv~D~ETT--------GL~~~--~D~IieIgav~v~~~~i~~~~~f~~lV~P~~~i~~~~~~IhGIt~~~l~~ap~~~ 99 (203)
T PRK09145 30 EWVALDCETT--------GLDPR--RAEIVSIAAVKIRGNRILTSERLELLVRPPQSLSAESIKIHRLRHQDLEHGLSEE 99 (203)
T ss_pred CEEEEEEECC--------CCCCC--CCEEEEEEEEEEECCEEECCCEEEEEECCCCCCCHHHHCCCCCCHHHHCCCCCHH
T ss_conf 8999985689--------99999--9706999999999999931752899989799598645201387879981399999
Q ss_pred HHHHHHHHHHCCCCCEEEEEEHHHHHHHHHH----HCCCCCCCCCEEEHHHHH--HHH--CC----CCCHHHHHHHCCCC
Q ss_conf 4379999986388981999730774999998----608998842033168899--986--78----99968989982998
Q gi|254781193|r 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKA----CFNLDIPIHRWICTLVLA--RSN--GL----PSALKAVGEALKLS 119 (675)
Q Consensus 52 ~~~~~l~~~L~~~~~~kV~HNa~FD~~~L~~----~~Gi~i~~~~~~DTmi~A--~~l--~~----~~sL~~la~~l~l~ 119 (675)
T Consensus 100 evl~~f~~fi~--~~~lVgHNa~FD~~fL~~~~~r~~g~~l~-~~~id~~~l~~~~~~~~~~~~~~~~~L~~l~~~~gi~ 176 (203)
T PRK09145 100 EALRQLLAFIG--NRPLVGYYLEFDVAMLNRYVRPLLGIGLP-NPLIEVSSLYHDKKERHLPDAYIDLRFDAILKHLDLP 176 (203)
T ss_pred HHHHHHHHHCC--CCEEEEECHHHHHHHHHHHHHHHCCCCCC-CCEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCC
T ss_conf 99999998829--99899987899999999999996299999-9877609879999996676987788999999857987
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 1100437999986202112343323467858532899999989989999999963010
Q gi|254781193|r 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 (675)
Q Consensus 120 ~~k~~~~k~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~t~~L~~~l~~ 177 (675)
T Consensus 177 ~~~--------------------------~H---------rAL~DA~aTa~lfl~L~k 199 (203)
T PRK09145 177 VLG--------------------------RH---------DALNDAIMTALIYLRLRK 199 (203)
T ss_pred CCC--------------------------CC---------CHHHHHHHHHHHHHHHHC
T ss_conf 899--------------------------97---------989999999999999867