HHsearch alignment for GI: 254781193 and conserved domain: TIGR00573
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family; InterPro: IPR006054 All proteins in this entry for which functions are known are components of the DNA polymerase III complex (epsilon subunit). There is, however, an outgroup that includes paralogs in some gamma-proteobacteria and the N-terminal region of DinG from some low GC Gram-positive bacteria. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication.
Probab=97.83 E-value=0.00066 Score=43.70 Aligned_cols=90 Identities=13% Similarity=0.149 Sum_probs=60.1
Q ss_pred HHHHHHHHHCCCCCEEEEEEHHHHHHHHHHH---CCCCC--CCCCEEEHHHHHHHHCC--C---CCHHHHHHHCCCCCCH
Q ss_conf 3799999863889819997307749999986---08998--84203316889998678--9---9968989982998110
Q gi|254781193|r 53 MPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDI--PIHRWICTLVLARSNGL--P---SALKAVGEALKLSSQK 122 (675)
Q Consensus 53 ~~~~l~~~L~~~~~~kV~HNa~FD~~~L~~~---~Gi~i--~~~~~~DTmi~A~~l~~--~---~sL~~la~~l~l~~~k 122 (675)
T Consensus 78 ia~dF~~~I~--g~~Lv~HNA~FD~GFl~~e~~~LG~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~Ld~L~~~~~~~~s~ 155 (228)
T TIGR00573 78 IAEDFADYIK--GAVLVIHNASFDVGFLNYEFSKLGLKKEPKTNDVIDTTDTLQAARPEFPGKRNTLDALALRYEITNSH 155 (228)
T ss_pred HHHHHHHHHC--CCEEEEEHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHH
T ss_conf 8899999837--94787520030577899999851450110011444499999999720588430277778780544037
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 0437999986202112343323467858532899999989989999999963010
Q gi|254781193|r 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 (675)
Q Consensus 123 ~~~~k~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~t~~L~~~l~~ 177 (675)
T Consensus 156 ---------------------------------R~~H~A~~DA~~l~~~~~~~~~ 177 (228)
T TIGR00573 156 ---------------------------------RALHGALLDAFILAKLYLVMTG 177 (228)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------------------------------7773177889999999999986