HHsearch alignment for GI: 254781193 and conserved domain: TIGR00573

>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family; InterPro: IPR006054 All proteins in this entry for which functions are known are components of the DNA polymerase III complex (epsilon subunit). There is, however, an outgroup that includes paralogs in some gamma-proteobacteria and the N-terminal region of DinG from some low GC Gram-positive bacteria. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication.
Probab=97.83  E-value=0.00066  Score=43.70  Aligned_cols=90  Identities=13%  Similarity=0.149  Sum_probs=60.1

Q ss_pred             HHHHHHHHHCCCCCEEEEEEHHHHHHHHHHH---CCCCC--CCCCEEEHHHHHHHHCC--C---CCHHHHHHHCCCCCCH
Q ss_conf             3799999863889819997307749999986---08998--84203316889998678--9---9968989982998110
Q gi|254781193|r   53 MPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDI--PIHRWICTLVLARSNGL--P---SALKAVGEALKLSSQK  122 (675)
Q Consensus        53 ~~~~l~~~L~~~~~~kV~HNa~FD~~~L~~~---~Gi~i--~~~~~~DTmi~A~~l~~--~---~sL~~la~~l~l~~~k  122 (675)
T Consensus        78 ia~dF~~~I~--g~~Lv~HNA~FD~GFl~~e~~~LG~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~Ld~L~~~~~~~~s~  155 (228)
T TIGR00573        78 IAEDFADYIK--GAVLVIHNASFDVGFLNYEFSKLGLKKEPKTNDVIDTTDTLQAARPEFPGKRNTLDALALRYEITNSH  155 (228)
T ss_pred             HHHHHHHHHC--CCEEEEEHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHH
T ss_conf             8899999837--94787520030577899999851450110011444499999999720588430277778780544037


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             0437999986202112343323467858532899999989989999999963010
Q gi|254781193|r  123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP  177 (675)
Q Consensus       123 ~~~~k~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~t~~L~~~l~~  177 (675)
T Consensus       156 ---------------------------------R~~H~A~~DA~~l~~~~~~~~~  177 (228)
T TIGR00573       156 ---------------------------------RALHGALLDAFILAKLYLVMTG  177 (228)
T ss_pred             ---------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ---------------------------------7773177889999999999986