HHsearch alignment for GI: 254781193 and conserved domain: TIGR01406

>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit; InterPro: IPR006309 These represent DnaQ, the DNA polymerase III epsilon subunit, as found in most Proteobacteria. It consists largely of an exonuclease region as described in IPR006055 from INTERPRO. In Gram-positive bacteria, closely related regions are found both in the Gram-positive type DNA polymerase III alpha subunit and as an additional N-terminal domain of a DinG-family helicase. Both are not included in this set of sequences, as they are smaller proteins.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication.
Probab=99.22  E-value=1.4e-10  Score=86.87  Aligned_cols=89  Identities=20%  Similarity=0.250  Sum_probs=64.8

Q ss_pred             HHHHHHHHHCCCCCEEEEEEHHHHHHHHHH---HCC---CC-C-CCCCEEEHHHHHHHHCCC--CCHHHHHHHCCCCCCH
Q ss_conf             379999986388981999730774999998---608---99-8-842033168899986789--9968989982998110
Q gi|254781193|r   53 MPQVLKEALENTDVTIVAHNSYFERTVLKA---CFN---LD-I-PIHRWICTLVLARSNGLP--SALKAVGEALKLSSQK  122 (675)
Q Consensus        53 ~~~~l~~~L~~~~~~kV~HNa~FD~~~L~~---~~G---i~-i-~~~~~~DTmi~A~~l~~~--~sL~~la~~l~l~~~k  122 (675)
T Consensus        79 Ia~~Fl~Fi~~~--~LvIHNA~FD~gFlN~EL~~Lg~~~~~~~~~~~~~~DTL~mAR~~FPG~~~sLDALCkRf~vDns~  156 (246)
T TIGR01406        79 IADEFLDFIKGS--ELVIHNAAFDVGFLNYELERLGLKEIKKISDFCRVIDTLAMARERFPGKRNSLDALCKRFKVDNSH  156 (246)
T ss_pred             HHHHHHHHHCCC--EEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCC
T ss_conf             899999984598--899975702167899999872873210001366786568999723789866467877430425000


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             043799998620211234332346785853289999998998999999996301
Q gi|254781193|r  123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE  176 (675)
Q Consensus       123 ~~~~k~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~t~~L~~~l~  176 (675)
T Consensus       157 R---------------------------------~LHGAL~DA~LLAeVYl~lt  177 (246)
T TIGR01406       157 R---------------------------------QLHGALLDAELLAEVYLALT  177 (246)
T ss_pred             C---------------------------------HHHHHHHHHHHHHHHHHHHC
T ss_conf             2---------------------------------13478999999999999862