HHsearch alignment for GI: 254781193 and conserved domain: TIGR01406
>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit; InterPro: IPR006309 These represent DnaQ, the DNA polymerase III epsilon subunit, as found in most Proteobacteria. It consists largely of an exonuclease region as described in IPR006055 from INTERPRO. In Gram-positive bacteria, closely related regions are found both in the Gram-positive type DNA polymerase III alpha subunit and as an additional N-terminal domain of a DinG-family helicase. Both are not included in this set of sequences, as they are smaller proteins.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication.
Probab=99.22 E-value=1.4e-10 Score=86.87 Aligned_cols=89 Identities=20% Similarity=0.250 Sum_probs=64.8
Q ss_pred HHHHHHHHHCCCCCEEEEEEHHHHHHHHHH---HCC---CC-C-CCCCEEEHHHHHHHHCCC--CCHHHHHHHCCCCCCH
Q ss_conf 379999986388981999730774999998---608---99-8-842033168899986789--9968989982998110
Q gi|254781193|r 53 MPQVLKEALENTDVTIVAHNSYFERTVLKA---CFN---LD-I-PIHRWICTLVLARSNGLP--SALKAVGEALKLSSQK 122 (675)
Q Consensus 53 ~~~~l~~~L~~~~~~kV~HNa~FD~~~L~~---~~G---i~-i-~~~~~~DTmi~A~~l~~~--~sL~~la~~l~l~~~k 122 (675)
T Consensus 79 Ia~~Fl~Fi~~~--~LvIHNA~FD~gFlN~EL~~Lg~~~~~~~~~~~~~~DTL~mAR~~FPG~~~sLDALCkRf~vDns~ 156 (246)
T TIGR01406 79 IADEFLDFIKGS--ELVIHNAAFDVGFLNYELERLGLKEIKKISDFCRVIDTLAMARERFPGKRNSLDALCKRFKVDNSH 156 (246)
T ss_pred HHHHHHHHHCCC--EEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCC
T ss_conf 899999984598--899975702167899999872873210001366786568999723789866467877430425000
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 043799998620211234332346785853289999998998999999996301
Q gi|254781193|r 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 (675)
Q Consensus 123 ~~~~k~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~t~~L~~~l~ 176 (675)
T Consensus 157 R---------------------------------~LHGAL~DA~LLAeVYl~lt 177 (246)
T TIGR01406 157 R---------------------------------QLHGALLDAELLAEVYLALT 177 (246)
T ss_pred C---------------------------------HHHHHHHHHHHHHHHHHHHC
T ss_conf 2---------------------------------13478999999999999862