HHsearch alignment for GI: 254781193 and conserved domain: cd06146
>cd06146 mut-7_like_exo The mut-7 subfamily is composed of Caenorhabditis elegans mut-7 and similar proteins found in plants and metazoans. Mut-7 is implicated in posttranscriptional gene silencing. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs, termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
Probab=99.41 E-value=3.4e-11 Score=90.84 Aligned_cols=146 Identities=20% Similarity=0.123 Sum_probs=100.7
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCEEEEEEECCC-----CHHHHHHHHHHHCCCCCEEEEEEHHHH
Q ss_conf 689998141789870004400112798199999998480399997888-----104379999986388981999730774
Q gi|254781193|r 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVLKEALENTDVTIVAHNSYFE 76 (675)
Q Consensus 2 k~i~lD~ET~~~~dl~~~Gl~~y~~~~~i~~i~~a~~~~~v~~~d~~~-----~~~~~~~l~~~L~~~~~~kV~HNa~FD 76 (675)
T Consensus 23 ~vvg~D~Ew~~~~~--------~~~~~~vaLiQlat~~-~~~liD~~~~~~~~~~~~~~~L~~ll~~~~i~Kvg~~~~~D 93 (191)
T cd06146 23 RVVGIDSEWKPSFL--------GDSDPRVAILQLATED-EVFLLDLLALENLESEDWDRLLKRLFEDPDVLKLGFGFKQD 93 (191)
T ss_pred CEEEEECCCCCCCC--------CCCCCCEEEEEEECCC-CCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHH
T ss_conf 88999787578777--------8888952799995299-75899970456543477899999994799968999443868
Q ss_pred HHHHHHHCCCC----CCCCCEEEHHHHHHHHC-------------CCCCHHHHHHH-CCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 99999860899----88420331688999867-------------89996898998-29981100437999986202112
Q gi|254781193|r 77 RTVLKACFNLD----IPIHRWICTLVLARSNG-------------LPSALKAVGEA-LKLSSQKMEEGKELIARFCKGET 138 (675)
Q Consensus 77 ~~~L~~~~Gi~----i~~~~~~DTmi~A~~l~-------------~~~sL~~la~~-l~l~~~k~~~~k~l~~~~~k~~~ 138 (675)
T Consensus 94 ~~~L~~~~~~~~~~~~~~~~~~Dl~~~a~~~~~~~~~~~~~~~~~~~~gL~~L~~~~lg~~l~K~~q------------- 160 (191)
T cd06146 94 LKALSASYPALKCMFERVQNVLDLQNLAKELQKSDMGRLKGNLPSKTKGLADLVQAVLGKPLDKSEQ------------- 160 (191)
T ss_pred HHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCC-------------
T ss_conf 9999986586432333644035799999997311221011003556756999999990987885651-------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3433234678585328999999899899999999630
Q gi|254781193|r 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 (675)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~t~~L~~~l 175 (675)
T Consensus 161 -----~SnW~~rPL-t~~Qi~YAA~Da~~ll~iy~~L 191 (191)
T cd06146 161 -----CSNWERRPL-REEQILYAALDAYCLLEVFDKL 191 (191)
T ss_pred -----CCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHC
T ss_conf -----389999989-9999999999899999999739