HHsearch alignment for GI: 254781193 and conserved domain: pfam00476
>pfam00476 DNA_pol_A DNA polymerase family A.
Probab=100.00 E-value=0 Score=651.80 Aligned_cols=367 Identities=24% Similarity=0.285 Sum_probs=324.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCC-----CCCCHHHHHHHHH-CCCCH
Q ss_conf 37999999999999999999999998728854767887999887777558888889-----8853389987213-04823
Q gi|254781193|r 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNK-KLTPQ 272 (675)
Q Consensus 199 vD~e~l~~l~~~~~~~~~~l~~~i~~~~~~~~~n~~S~~ql~~~L~~~lg~~~~~~-----~k~t~~~~L~~~~-~~~~~ 272 (675)
T Consensus 1 vd~~~l~~~~~~l~~~~~~l~~~i~~~a-G~~fN~~S~~ql~~vLf~~l~l~~~~~t~~~g~~st~~~~L~~l~~~~hp~ 79 (383)
T pfam00476 1 VDVEYLEELSNELGAQLADLEFKIPELA-GEEFNLGSPKQLGVLLFEELGLPKTKKTDKTGARSTNADVLESLREDAHEI 79 (383)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHH
T ss_conf 9889999999999999999999999995-997699998999998497359999997789999867899999876168869
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 8999999999765510133578874086-896767788400013221124788844488888651134554310123333
Q gi|254781193|r 273 AIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 (675)
Q Consensus 273 ~~~~l~~r~~~~k~~~~~~~~~~~~~~~-dgRih~~~~~~gat~TGR~S~~~pNlQnlPr~~~~~~~~~~~~~~~~~~~~ 351 (675)
T Consensus 80 ~~~il~~R~-~~Kl~~t~~~~l~~~~~~~~gRih~~~nq~g-t~TGRlSs~~PNlQniP~~~~~g--------------- 142 (383)
T pfam00476 80 IKIILEYRQ-LSKLQSTYVDKLPLMIDPDDGRIHTSYNQAG-TATGRLSSTDPNLQNIPIRNEYG--------------- 142 (383)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCEECCEEECCC-CCEEECCCCCCCCCCCCCCCCCC---------------
T ss_conf 999999999-9999999999988862678986801242264-20220356798645799888430---------------
Q ss_pred CCCCCCCCCHHHHHEEEECCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHCCCCHHHHCCHHHHH
Q ss_conf 45544321003333012668987899983453723333231146201134541133101014764487956706201110
Q gi|254781193|r 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 (675)
Q Consensus 352 ~~~~~~~~~~~~iR~~f~a~~G~~lv~aDySqiElRvlA~ls~d~~l~~af~~g~D~h~~tA~~~~g~~~~~~~~~~R~~ 431 (675)
T Consensus 143 ----------~~iR~~Fva~~G~~lv~aDySQiElRilA~ls~D~~l~~af~~g~Dih~~tA~~ifg~~~~~v~~~~R~~ 212 (383)
T pfam00476 143 ----------REIRAAFIAEPGYVLVAADYSQIELRILAHLSGDENLIEAFRTGADIHTLTAADIFGVDLHEVTGNQRRN 212 (383)
T ss_pred ----------HHHHHEEECCCCCEEEEECHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCHHHHHH
T ss_conf ----------5567436279998788505877668888752054889998702765889889998499978868556767
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 16520210028888889987987088831134556555455556788889999887643100010220788899999999
Q gi|254781193|r 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 (675)
Q Consensus 432 aK~~~~g~~YG~G~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~~~~r 511 (675)
T Consensus 213 AK~~~fGi~YG~g~~~La~--------------------------------------------~l~is~~eA~~~i~~~~ 248 (383)
T pfam00476 213 AKTFNFGRIYGASAKGLSQ--------------------------------------------LLGISREEAKEFIEKYF 248 (383)
T ss_pred HHHHHHHHHHCCCHHHHHH--------------------------------------------HHCCCHHHHHHHHHHHH
T ss_conf 7771316644846889998--------------------------------------------85888999999999999
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHH
Q ss_conf 87887899999999999999754917962154211332223445640232476631016786621021010023456777
Q gi|254781193|r 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 (675)
Q Consensus 512 ~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GR~~~~~~~~~~~~~~~~~~~~~~r~~ 591 (675)
T Consensus 249 ~~yp~i~~~~~~~~~~a~~--------------------------~g~v~T~~GRrr~lp~~~~~~~~~~~---~~~r-- 297 (383)
T pfam00476 249 ERFPGVKRYREKTRKEAKK--------------------------GGYVETLFGRRRYLPDIDSRNRSLRE---AAER-- 297 (383)
T ss_pred HHCHHHHHHHHHHHHHHHH--------------------------CCCCCCCCCCEEECCCCCCCCHHHHH---HHHH--
T ss_conf 9783699999999999996--------------------------89611456876755775666788886---7767--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCEEEEECCEEEEECCCCHHHHH-HHHHHHHCCCCHHCCCCCCE
Q ss_conf 53145655453688999999999999967------981889952589997792489999-99999845652021599515
Q gi|254781193|r 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLK 664 (675)
Q Consensus 592 ~~~~k~~n~~iQgtaadi~k~ami~l~~~------g~~ivl~VHDEiv~evp~~~~~~~-~~i~~~M~~~~~w~~~~pl~ 664 (675)
T Consensus 298 ----~a~N~~IQGsAADi~k~Ami~i~~~l~~~~~~~~lvlqVHDElv~evp~~~~~~~~~~v~~~Me~~~~--l~VPl~ 371 (383)
T pfam00476 298 ----AALNTPIQGSAADILKLAMIKLDEALVEKGLDARMCLQVHDEIVFEVPKEEAEAVAAQIKELMERAMF--LDVPLL 371 (383)
T ss_pred ----HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEEEEEECHHHHHHHHHHHHHHHHHHCC--CCCCEE
T ss_conf ----65353268689999999999999999854999789996354118997689999999999999960427--899679
Q ss_pred EEECCCCCCC
Q ss_conf 7401004631
Q gi|254781193|r 665 AEGYESKRYR 674 (675)
Q Consensus 665 ae~~~~~~y~ 674 (675)
T Consensus 372 v~~~~G~~Wg 381 (383)
T pfam00476 372 VEVGQGRNWF 381 (383)
T ss_pred EECCCCCCHH
T ss_conf 6538278801