HHsearch alignment for GI: 254781193 and conserved domain: pfam03104
>pfam03104 DNA_pol_B_exo DNA polymerase family B, exonuclease domain. This domain has 3' to 5' exonuclease activity and adopts a ribonuclease H type fold.
Probab=94.95 E-value=0.17 Score=28.13 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=39.1
Q ss_pred CCEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECC----E-----------------EEEEEECCCCHHHHHHHHH
Q ss_conf 968999814178987000440011279819999999848----0-----------------3999978881043799999
Q gi|254781193|r 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD----H-----------------PVELWDCVHDPVMPQVLKE 59 (675)
Q Consensus 1 mk~i~lD~ET~~~~dl~~~Gl~~y~~~~~i~~i~~a~~~----~-----------------~v~~~d~~~~~~~~~~l~~ 59 (675)
T Consensus 86 lrilsfDIEc~~~~-----g~FP~~~~d~IiqIs~~~~~~g~~~~~~~~~~tl~~~~~i~~~~~V~~f~~E~~ll~~f~~ 160 (254)
T pfam03104 86 LRVLSFDIECTSLK-----GKFPENEKDPIIQISCMLYREGEPDPIEDKLFTLKSCALIEIGGEVYIFPSEKELLRRFFE 160 (254)
T ss_pred CEEEEEEEEECCCC-----CCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHH
T ss_conf 53999988958889-----9999878983899998988567898632069980787767789779995999999999999
Q ss_pred HHC--CCCCEEEEEEH-HHHHHHHHH
Q ss_conf 863--88981999730-774999998
Q gi|254781193|r 60 ALE--NTDVTIVAHNS-YFERTVLKA 82 (675)
Q Consensus 60 ~L~--~~~~~kV~HNa-~FD~~~L~~ 82 (675)
T Consensus 161 ~i~~~dpdii-~gyNi~~FD~~yl~~ 185 (254)
T pfam03104 161 FIRQYDPDII-TGYNGDNFDWPYILN 185 (254)
T ss_pred HHHHCCCCEE-EECCCCCCCHHHHHH
T ss_conf 9875199899-966787788899999