PSIBLAST alignment of GI: 254781193 and protein with PDB id: 1qss
>gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 539
>gi|5822350|pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 539
Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats.
Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%)
Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
+ +VL L +P ++LA + + V
Sbjct: 63 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 103
Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
GE E +R + R L+G R ++ E+ L + +
Sbjct: 104 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 154
Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250
G +DVA L+ V E +L+ E+ L + ++L+ LF E GL
Sbjct: 155 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 213
Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
E + +T VL + ++ P ++ R ++ ++ L + ++ GRL
Sbjct: 214 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 272
Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
A+ TGR S QN+P + + +R
Sbjct: 273 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 306
Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V V
Sbjct: 307 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 366
Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
R K + G++
Sbjct: 367 RRAAKTINF--------------GVLYGMS------------------------------ 382
Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
+ E + + + Q +V + + E+ G
Sbjct: 383 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 431
Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
GR D+ + + R VQ + D
Sbjct: 432 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 467
Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
++ M+ + G ++L VHDE+V E P + L +M A +PL
Sbjct: 468 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 525
Query: 664 KAEGYESKRY 673
+ E + +
Sbjct: 526 EVEVGIGEDW 535