BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] (675 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|254040870|gb|ACT57666.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|317120755|gb|ADV02576.1| DNA polymerase A [Candidatus Liberibacter asiaticus] Length = 675 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 675/675 (100%), Positives = 675/675 (100%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA Sbjct: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS Sbjct: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS Sbjct: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK Sbjct: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS Sbjct: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII Sbjct: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA Sbjct: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN Sbjct: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA Sbjct: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN Sbjct: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG Sbjct: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660 Query: 661 LPLKAEGYESKRYRK 675 LPLKAEGYESKRYRK Sbjct: 661 LPLKAEGYESKRYRK 675 >gi|313895585|ref|ZP_07829141.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975711|gb|EFR41170.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 645 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 216/697 (30%), Positives = 315/697 (45%), Gaps = 75/697 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M ++ ID ET S + L K G+ KYAE D ++LF + D V++ D + +P+ + Sbjct: 1 MKSISIDVETFSSVPLAKAGVYKYAESEDFEILLFGYSVDGGEVQVVDLANGEEIPKEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + VT A N+ FER L + + + W C+++ A + GLP +LK VG L L Sbjct: 61 AALTDETVTKWAFNAMFERVCLSRHLGIHLKPNAWRCSMIWAATLGLPLSLKDVGAVLWL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKR 174 QK+EEGK+LI F CK RN P + E W+LF EY K DV I R Sbjct: 121 DRQKLEEGKDLIRYFCVPCKATRSNGGRTRNLPADAPEKWKLFTEYNKRDVETEMAIQAR 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L+ P+ E E + +DQ INDRG VD + + + ++LT + + Sbjct: 181 LKKFPVPESEWENYVIDQEINDRGILVDTTFVTQAICCDERSKAVCLERAQNLTD--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L WL + GL +E L ++ V K T +V R + S+++V K Sbjct: 239 PNSPLQLMDWLHGK-GLSVESLAKS---EVTKMLKTATGDVREVLELRQQLSKTSVKKYM 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + +D R RG QF GA+RTGR++G + QNLP+ + + + + Sbjct: 295 AMEAVTGADHRARGLFQFYGANRTGRFAGRLIQLQNLPQNHLAQLKEVRTLVKDGDFELL 354 Query: 353 D---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 D ++S +R+ + + VVAD A IEARVLAW+AGEQW L F D+Y Sbjct: 355 DMLYDSTSDVLSQLIRTSFVPHPACRFVVADYAAIEARVLAWLAGEQWVLDVFREHGDIY 414 Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 T +R F+ + D R GK L+ GY G A M Sbjct: 415 CETASRMFHCKVEKHGENADLRQKGKQAVLSCGYGGSVGALVAMG--------------- 459 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A+E + + WR + + + W ++ +A Sbjct: 460 -------------------------AVESGMKEEELQPLVDLWRASNPHIVQFWWDVDRA 494 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTT-- 583 + ++ + R V L + LPSGR L Y +G NR + Sbjct: 495 VKTCVKRRVEVETHGIRCV------YKSGVLFIRLPSGRELAYAKPRIGENRFGGESVTY 548 Query: 584 -----TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 T++ R T+GGKL ENI Q +RD+L M G+DIV+ VHDEIV E P Sbjct: 549 EGLGMTKKWERIETFGGKLVENITQGTARDLLVFAMKQLRNRGFDIVMHVHDEIVLEVPY 608 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + +M NP WAKGLPLKA+GYE + YRK Sbjct: 609 G-VSSVEEICSIMAENPPWAKGLPLKADGYECEFYRK 644 >gi|293401134|ref|ZP_06645278.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305260|gb|EFE46505.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 646 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 203/702 (28%), Positives = 305/702 (43%), Gaps = 84/702 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S + L K G+ +Y E + ++LFA+ D PV++ D +P+ + Sbjct: 1 MKTLSIDIETYSDVQLPKTGVYRYCESDNFEILLFAYSIDSQPVQVVDLACGETIPEEII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 ALE+ V A N+ FER L + W C+++ A + GLP +L+ VG Sbjct: 61 AALEDDTVIKWAFNAAFERICLSRFLGYPTGTYLSPESWRCSMIWAATMGLPLSLEGVGA 120 Query: 115 ALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170 L L QK+ EGK+LI FC+ RN+P H + W F Y DV Sbjct: 121 VLGLEKQKLTEGKDLIKYFCQPCAATKANGGRTRNRPFHAPDKWEAFKRYNIRDVETEMG 180 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I +L P+ ++ E +++DQ INDRG +D+ L + R +L ++ +T Sbjct: 181 IQHKLRKFPVPNEVWEEYHIDQEINDRGVRLDMELVSQAIAMDTRSREELTAAIKDMT-- 238 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + ++++K WL G+ + L + +L V R + ++S+V Sbjct: 239 ELENPNSVQQMKQWLSD-NGIETDSLDKKAVAELLKDAPDN---LADVLTLRQQLAKSSV 294 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 K + + + SDGR RG QF GA+RTGR+SG QNLP+ + + Sbjct: 295 RKYQAMEKTVCSDGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPDLSEARSLVRSGD 354 Query: 349 ---SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 D +S +R+ I E VAD + IEARV+AW AGE W+ + FE G Sbjct: 355 FDGVELLYEDVPDTLSQLIRTAFIPRENALFYVADFSAIEARVIAWFAGESWRQQVFEKG 414 Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462 D+Y + ++ F V + R GK+ ELALGY G A + M + GLN Sbjct: 415 GDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALDMGLNEEEL 474 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + AWRQ + R+ E W Sbjct: 475 PA-----------------------------------------LVDAWRQANPRIVEFWW 493 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN---- 576 + +A + ++ + L + LPSGR L Y +G N Sbjct: 494 AVDRAVMEAVKYKHTTTDYG------LTFSCKSGMLFITLPSGRKLAYVKPKIGTNKFGG 547 Query: 577 --RSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 +Y T++ R +YG K ENIVQA +RDIL M IV+ +HDE+V Sbjct: 548 SCITYEGVGGTKKWERLDSYGPKFVENIVQATARDILCYAMKTL--RCCSIVMHIHDELV 605 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + + M P WAKGL L+A+GY + Y+K Sbjct: 606 IEADPK--VSLDAICEQMGRTPPWAKGLLLRADGYTTPFYKK 645 >gi|167039879|ref|YP_001662864.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514] gi|300915307|ref|ZP_07132621.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561] gi|307724797|ref|YP_003904548.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513] gi|166854119|gb|ABY92528.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514] gi|300888583|gb|EFK83731.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561] gi|307581858|gb|ADN55257.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513] Length = 644 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 210/697 (30%), Positives = 327/697 (46%), Gaps = 76/697 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL K G+ +YAE D ++LF + D PV++ D +P+ ++ Sbjct: 1 MRTLSIDIETFSSVDLAKSGVYRYAEAPDFEILLFGYSVDAGPVQVVDFACGEKIPKEIQ 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +A+ + +VT A N+ FER L F + + W CT+V + GLP +L+ Sbjct: 61 QAILDNNVTKWAFNAQFERICLSKYFGIHLAPDSWRCTMVWSAYLGLPLSLEGAAIVTGA 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 +K+ +GKELI F CK RN P H E W F Y DV V I ++ Sbjct: 121 DKKKLTKGKELIRYFSVPCKPTVTNGGRTRNLPEHAPEKWNSFKAYNLRDVEVELSIQEK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L+ P+ +E + LDQ INDRG +D+ L Q + R +L L+ LT + + Sbjct: 181 LQKFPMPEEEWNNYILDQQINDRGIQLDLELVKKAIQCDEKVREELTSRLKELTD--LDN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + ++K+WL + GL + L + + + +L + + R ++S+V K Sbjct: 239 PNSVVQMKSWLSEK-GLETDSLDKASVKALLKEAPEHLSEV---LELRQLLAKSSVKKYT 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLPTS 349 + A+ +DGR RG LQF GA+RTGR++G + QNLP+ S E + + H Sbjct: 295 AMENAVCTDGRARGLLQFYGANRTGRFAGRLIQVQNLPQNHLSDLEQARRLVRGGHFDAL 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S+ +R+ + +G K +VAD + IEARV+AW+AGE W+ + F T +Y Sbjct: 355 EILYDSIPGVLSELIRTAFVPKKGYKFIVADFSAIEARVIAWLAGETWRNEVFATHGKIY 414 Query: 410 VTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + ++ F V +VTK R GK+ ELALGY G A + M + Sbjct: 415 EASASQMFKVPLEEVTKGSPLRQKGKIAELALGYGGSVGALKAMGA-------------- 460 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 ++ + + AWR + + LW ++ +A Sbjct: 461 --------------------------LDMGLTEEELKPLVYAWRNANPNIVRLWWDVDRA 494 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--------NNRSY 579 ++ + + R + L++ LPSGR L Y +Y Sbjct: 495 VKEAVTERCRTETHRIR------FEYRSGMLLIWLPSGRQLTYVKPRMGINSFGSEAVTY 548 Query: 580 LN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 T++ R +YG K ENIVQA+SRD+L M N ++G +IV+ VHDE+V E P Sbjct: 549 EGVGATKKWERIESYGPKFVENIVQAISRDLLCHSMRNLDESGLNIVMHVHDEVVLEVP- 607 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + LM P WA GL L+A+G+E Y+K Sbjct: 608 -LEICVQDVCVLMGQVPPWAHGLLLRADGFECDFYKK 643 >gi|300764694|ref|ZP_07074685.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017] gi|300514580|gb|EFK41636.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017] Length = 645 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 212/700 (30%), Positives = 322/700 (46%), Gaps = 81/700 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L +D ET S +DL+KCG+ KY+E D ++LFA+ D PVE+ D D +P + Sbjct: 1 MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 +L + V A N+ FER L LD + W CT+V + GLP +L VG L Sbjct: 61 TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120 Query: 117 KLSSQKMEEGKELIARFCK---GETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 L QK+ EGK+LI FC RN P+H W F Y DV V I Sbjct: 121 GLDKQKLTEGKDLIRYFCVPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRDVEVEIAIQ 180 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +L P+ + ++LDQ INDRG +D Q+ ++ + L+Q+L+ LT + Sbjct: 181 GKLSNFPVLDSVWKEYWLDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQELTG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + + +++ WL GL E L + +L + QV R + ++S+V K Sbjct: 239 ENPNSVLQMRGWLLDH-GLETESLGKKAVAELLEQ--PIDENLKQVLVLRQQLAKSSVKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL---P 347 + SD R RG QF GA+RTGR++G QNLP+ S + + Sbjct: 296 YQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLSEARSLVKQSNFE 355 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + ++S+ +R+ + EG K +V+D + IEARV+AW++GE+W+ + F+ G D Sbjct: 356 MLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQEVFKNGGD 415 Query: 408 LYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKM-ASTTGLNLNTFAH 464 +Y + ++ F V + R GK+ ELALGY G A + M A GL + Sbjct: 416 IYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMDALEMGLTED---- 471 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + + +WR + ++ELW + Sbjct: 472 -------------------------------------ELQPLVNSWRDSNINITELWWAV 494 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN- 581 +A + ++ ++ + + L + L SGR LVY +G N+ Sbjct: 495 DKAVKTCVKERRSTSTHG------IKFEYKSGFLFIQLLSGRKLVYVKPKIGENKFGGEA 548 Query: 582 ------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 T++ R +YG K ENIVQA++RDIL M N K Y IV VHDE++ E Sbjct: 549 VTYEGVGATKKWERLESYGPKFVENIVQAIARDILCFAMENLRK--YRIVGHVHDEVIIE 606 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P E + LM+ P WA+GL L A+GYE + Y+K Sbjct: 607 VP--MESKVEDICQLMSQTPKWAEGLLLNADGYECEFYQK 644 >gi|225573258|ref|ZP_03782013.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM 10507] gi|225039390|gb|EEG49636.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM 10507] Length = 645 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 214/697 (30%), Positives = 325/697 (46%), Gaps = 78/697 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL+KCG+ KYA V+LF + D V + D +P+ + Sbjct: 4 MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYTADGGDVRVVDLACGEQIPEEVI 63 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL +T VT A N+ FER L + W CT+V + + GLP +L++ G AL L Sbjct: 64 SALSDTSVTKWAFNAMFERVCLSNFLGEWLEPEGWHCTMVWSATLGLPLSLESAGAALGL 123 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK+ EGK+LI F C+ RN+P H E W F Y DV +I KR Sbjct: 124 EKQKLTEGKDLIRYFCVPCRPTKANGGRTRNRPEHDPEKWERFKAYNLRDVETEMQIQKR 183 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+ E ++LDQ INDRG VD+ L + R +L L+ LT + + Sbjct: 184 LSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAMDARSREQLTDALQELTG--LDN 241 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++++K WL GL + L + ++ + V + R + ++S+V K Sbjct: 242 PNSVQQMKQWLADH-GLETDTLGKKVVAELV---RSAPEPLKTVLSLRQQLAKSSVKKYA 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTS 349 + A+ +DGR G QF GA+RTGR+SG + QNLP+ S + + + Sbjct: 298 AMENAVCADGRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMSDLAQARALMRGGNYEAI 357 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 D +S +R+ + +G+K +VAD + IEARV+AW AGE+W+LK FE G+D+Y Sbjct: 358 SMLYEDIPDTLSQLIRTAFVPQDGRKFIVADFSAIEARVIAWFAGERWRLKVFEDGDDIY 417 Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + ++ F+V + R GK+ ELALGY G A + M Sbjct: 418 SASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG--------------- 462 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A+E + + AWR + +++ W ++ +A Sbjct: 463 -------------------------ALEMGLAEEELQPLVDAWRTSNPMITQFWWDVDRA 497 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR------SY 579 ++ ++ + + ++ L + LPSGR L Y +G N+ +Y Sbjct: 498 VKECVKKRVPMESHG------LHFDYRSAMLFITLPSGRRLAYVKPRIGENQFGRESVTY 551 Query: 580 LN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 + + ++ R +YG K ENIVQ +RDIL M IV VHDEI+ E Sbjct: 552 MGVSGAKKWERLESYGPKFVENIVQGTARDILCYAMRTL--RNCAIVAHVHDEIIIEA-- 607 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + S + M PSWAKGL L+A+GYE + Y+K Sbjct: 608 DRRMSLSAVCEQMGRTPSWAKGLKLRADGYECEFYQK 644 >gi|313898058|ref|ZP_07831597.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] gi|312957086|gb|EFR38715.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] Length = 646 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 203/701 (28%), Positives = 316/701 (45%), Gaps = 82/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S L K G+ +Y E + ++LFA+ D PV++ D +P+ + Sbjct: 1 MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDHQPVQVIDLACGEQIPKEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 ALE+ DV A N+ FER L + W C++V A + GLP +L+ VG Sbjct: 61 LALEDEDVIKWAFNAAFERICLSRFLGYPTGEYLDPESWRCSMVWAATMGLPLSLEGVGA 120 Query: 115 ALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170 L L QK+ EGK+LI FC+ RN+P H + W +F +Y DV Sbjct: 121 VLGLEKQKLTEGKDLIKYFCQPCAPTKTNGQRTRNRPFHAPDKWAMFKKYNIRDVETEMG 180 Query: 171 IFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I +R P+ ++ + +++DQ INDRG +D+ L ++ RTKL + ++ +T Sbjct: 181 IQQRLARFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTKLTETMKEIT-- 238 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + ++++K WL GL + L + +L K P+ QV R + ++S+V Sbjct: 239 ELENPNSVQQMKAWLSD-NGLETDTLGKKAVAELL---KSAPPKLSQVLTLRQQLAKSSV 294 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---H 345 K + + + +DGR RG QF GA+RTGR+SG QNLP+ S + + + Sbjct: 295 RKYQAMEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLSDLAEARSLVRSGN 354 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 D +S +R+ I EG + +VAD + IEAR++AW AGE+W+ F G Sbjct: 355 FEAVELLYEDVPDTLSQLIRTAFIPREGTQFLVADFSAIEARIIAWFAGEKWRQDVFAKG 414 Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+Y + ++ F V + R GK+ ELALGY G A + M + Sbjct: 415 GDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGA---------- 464 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 ++ + AWRQ + + + W Sbjct: 465 ------------------------------LDMGLTEDELPPLVDAWRQSNPNIVKFWWN 494 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581 + A + ++ + L + LPSGR L Y +G N+ Sbjct: 495 VDHAVMEAVKFKHTTSEYG------LTFSCRSGMLFITLPSGRKLAYVKPKIGTNKFGGQ 548 Query: 582 -------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 +T++ R +YG K ENIVQA +RDIL M IV+ +HDE+V Sbjct: 549 CITYEGIGSTKKWERLDSYGPKFVENIVQATARDILCYAMQTL--RCCSIVMHIHDEVVI 606 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + + + M P WAKGL L+A+GY + Y+K Sbjct: 607 EADPS--MSLDAICEQMGRTPPWAKGLLLRADGYATPFYKK 645 >gi|300853539|ref|YP_003778523.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] gi|300433654|gb|ADK13421.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] Length = 649 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 199/701 (28%), Positives = 317/701 (45%), Gaps = 79/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S ++L K G+ +YAE D ++LF + D V++ D +P + Sbjct: 1 MKFISIDIETFSSVNLQKSGVYRYAESEDFDILLFGYSVDGGEVKVIDLARGEKIPIEII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 AL + V A N+ FER L + + W CT++ A + GLP +L+ VG Sbjct: 61 NALTDDSVIKWAFNAQFERICLSKWLGMKAGTYLSPKSWQCTMIWAATLGLPLSLEGVGA 120 Query: 115 ALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170 L QK+ +GK LI FC RN P+H E W++F Y K DV Sbjct: 121 VLGFKKQKLSQGKNLIKYFCIPCSPTKSNGGRTRNLPHHDIEKWKMFTFYNKRDVETEMA 180 Query: 171 IFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I +L E + ++LDQ IND G +D+ + + + ++ + LT Sbjct: 181 IQNKLSKFPVSKTEWQNYHLDQIINDGGINLDMDFVRQAISCDEKFKAENIKKAKELTG- 239 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + +LK WL L+ G+ + L++ +L + + + R + ++S+V Sbjct: 240 -LENPNSPAQLKDWL-LKQGMKTDSLSKAVVSELLQ---DSDGEIHEALSIRQQLAKSSV 294 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP- 347 K ++ + SD R RG +QF GA+RTGR+SG + QNLP+ + + + Sbjct: 295 KKYTSMENVVCSDSRARGLIQFYGANRTGRYSGRLIQVQNLPQNHLPDLKQARSLVKSGN 354 Query: 348 --TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 ++S+ +R+ I G + +VAD + IEARV+AW+AGE+W++ F G Sbjct: 355 FTALDLLYDSIPSVLSELIRTAFIPRYGSRFIVADFSAIEARVIAWLAGERWRIDVFAGG 414 Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+Y + ++ FNV + R GK+ ELALGY G A + M + Sbjct: 415 GDIYCASASQMFNVPVKKNGINGHLRQKGKIAELALGYGGSVGALKAMGAIQ-------- 466 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + + AWR + ++ LW Sbjct: 467 --------------------------------MGLVEDELKPIVDAWRNSNPNITSLWWR 494 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581 + +A + ++ + I L + LPSGR L Y +G NR Sbjct: 495 IDRAVKTVVKTKQPIEIYGIGIF------YQSGILFIKLPSGRRLAYVKPLIGENRFGGE 548 Query: 582 TT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + T++ R +YG K ENIVQA+SRDILAE M+ + IV+ VHDE+V Sbjct: 549 SVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILAEAMLKLATHEFQIVMHVHDEVVI 608 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E P+ + + +M+ P+WAKGL L A+GYE + Y+K Sbjct: 609 EAPNK-VSSVEEICRIMSETPAWAKGLILNADGYECEFYKK 648 >gi|167757895|ref|ZP_02430022.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704] gi|167664549|gb|EDS08679.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704] Length = 645 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 211/697 (30%), Positives = 314/697 (45%), Gaps = 78/697 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL+KCG+ KYA V+LF + D V + D +P+ Sbjct: 4 MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYAADGGDVHVVDLACGEQIPEEAI 63 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL +T VT N+ ER L + W CT+V + + GLP +L++ G AL L Sbjct: 64 SALSDTSVTKWTFNAMLERVCLSNFLGEWLEPEGWYCTMVWSATLGLPLSLESAGAALGL 123 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK+ EGK+LI F C+ RN+P H E W F Y DV +I KR Sbjct: 124 EKQKLTEGKDLIRYFCVPCRPTKANGGRTRNRPEHAPEKWERFKAYNLRDVETEMQIQKR 183 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+ E ++LDQ INDRG VD+ L I R +L + LT + + Sbjct: 184 LSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAIDTRSRERLTAAMRELT--ELEN 241 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +++K WL GL + L + ++ + + +V + R + ++S+V K Sbjct: 242 PNSAQQMKQWLADH-GLETDTLGKKAVAELVKTAPEP---LREVLSLRQQLAKSSVKKYT 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLPTS 349 + A+ +D R G QF GA+RTGR+SG + QNLP+ + + + Sbjct: 298 AMENAVCADSRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMGDLAEARALVRSGNYEAL 357 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 D +S +R+ + +G+K +VAD + IEARV+AW AGE+W+LK FE G D+Y Sbjct: 358 SVLYEDIPDTLSQLIRTAYVPQDGRKFIVADFSAIEARVIAWFAGERWRLKVFEDGGDIY 417 Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + ++ F+V + R GK+ ELALGY G A + M Sbjct: 418 CASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG--------------- 462 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A+E + + AWR + +++ W ++ +A Sbjct: 463 -------------------------ALEMGLAEEELQPLVDAWRGSNPMITQFWWDVDRA 497 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR------SY 579 + I R L + LPSGR L Y +G N+ +Y Sbjct: 498 VKDCIRQRIPTETHGLR------FDYRSAMLFINLPSGRRLAYVKPRIGENQFGGESVTY 551 Query: 580 LN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 + + T++ R +YG K ENIVQ +RDIL M IV VHDEI+ E Sbjct: 552 MGVSGTKKWERLESYGPKFVENIVQGTARDILCYAMQTL--KNCSIVAHVHDEIIIEA-- 607 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + + M P WAKGL L+A+GYE + Y+K Sbjct: 608 DRRMSVAAVCEQMGRTPPWAKGLKLRADGYECEFYQK 644 >gi|323693311|ref|ZP_08107529.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum WAL-14673] gi|323502794|gb|EGB18638.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum WAL-14673] Length = 646 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 201/701 (28%), Positives = 315/701 (44%), Gaps = 82/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S L K G+ +Y E + ++LFA+ D V++ D +P+ + Sbjct: 1 MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDSQSVQVIDLACGEQIPKEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 ALEN V A N+ FER L + W C+++ A + GLP +L+ VG Sbjct: 61 LALENETVIKWAFNANFERICLSRFLGYPTGEYLDSESWRCSMIWAATMGLPLSLEGVGA 120 Query: 115 ALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170 L L QK+ EGK+LI FC+ RN+P H + W +F +Y DV Sbjct: 121 VLGLEKQKLSEGKDLIKYFCQPCAPTKTNGQRTRNRPFHAPDKWAMFKKYNIRDVETEMG 180 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I +RL P+ ++ + +++DQ INDRG +D+ L ++ RT+L + ++ +T Sbjct: 181 IQQRLAKFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTELTETMKEIT-- 238 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + ++++K WL GL + L + + V K +P+ QV R + ++S+V Sbjct: 239 ELENPNSVQQMKAWLSD-NGLETDTLGK---KAVTELLKSASPKLSQVLTLRQQLAKSSV 294 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---H 345 K + + + +DGR RG QF GA+RTGR+SG QNLP+ + + + Sbjct: 295 RKYQAIEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPDLAEARSLVRSGN 354 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 D +S +R+ I EG + +VAD + IEARV+AW AGE+W+ + F G Sbjct: 355 FEAVKLLYEDVPDTLSQLIRTAFIPREGTQFLVADFSAIEARVIAWFAGEKWRQEVFAKG 414 Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+Y + ++ F V + R GK+ ELALGY G A + M + Sbjct: 415 GDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGA---------- 464 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 ++ + AWRQ + + + W Sbjct: 465 ------------------------------LDMGLTEEELPPLVDAWRQSNPNIVKFWWN 494 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581 + A + ++ + + L + LPSGR L Y +G N+ Sbjct: 495 VDHAVMEAVKFKHTTSSYG------LTFSCRSGMLFITLPSGRKLAYVKPKLGTNKFGGQ 548 Query: 582 -------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 T++ R +YG K ENIVQA +RDIL M IV+ +HDE+V Sbjct: 549 CITYEGIGGTKKWERLDSYGPKFVENIVQATARDILCYAMKTL--RCCSIVMHIHDEVVI 606 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + + M P WAKGL L+A+GY + Y+K Sbjct: 607 EA--DPRMSLEAVCEQMGRTPPWAKGLLLRADGYATPFYKK 645 >gi|256617076|ref|ZP_05473922.1| DNA polymerase I [Enterococcus faecalis ATCC 4200] gi|257088361|ref|ZP_05582722.1| DNA polymerase I [Enterococcus faecalis D6] gi|256596603|gb|EEU15779.1| DNA polymerase I [Enterococcus faecalis ATCC 4200] gi|256996391|gb|EEU83693.1| DNA polymerase I [Enterococcus faecalis D6] Length = 645 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 205/699 (29%), Positives = 325/699 (46%), Gaps = 79/699 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID E+ S D++KCG KY+E D ++LFA+ D PVE+ D +P+ + Sbjct: 1 MKHLSIDIESFSSADISKCGAYKYSESSDFEILLFAYSVDGQPVEVVDLAQGETIPEDVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 ++L + V A N+ FER L L+ + W CT+V A + GLP +L VG L Sbjct: 61 KSLSDETVIKHAFNANFERVCLSRFLGLNGFLNPRGWHCTMVWAATLGLPLSLAGVGAVL 120 Query: 117 KLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 L QK+ EGK+L+ FC RN P H + WR F Y DV V I Sbjct: 121 GLDKQKLSEGKDLVRYFCMPCNATKVNQGRTRNLPRHSLDKWRDFVAYNIRDVEVEVAIQ 180 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++L P++ + E ++LDQ INDRG +D+ LA + + +V + +++++L+ LT + Sbjct: 181 QKLSNFPVTQEIWEEYWLDQEINDRGIEIDMILADSAVNLDEVSKNEINEQLKKLTG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + + ++++WL GL +E L + + ++ + +V R + ++S+V K Sbjct: 239 ENPNSVLQMRSWLSQH-GLEVESLGKAAVKELIEQ--TNDDKLKEVLLLRQQLAKSSVRK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + D R RG QF GA+RTGR++G QNLP+ S + + Sbjct: 296 YQAMQNYACLDNRARGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLAEARELVRNGEYE 355 Query: 351 ---TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + +++S+ +R+ I G K +V+D + IEARV+AW+AGE+W+ + F G D Sbjct: 356 LLALLYDNVPEVLSELIRTAFIPKPGMKFIVSDFSAIEARVIAWLAGEKWRKEVFRNGGD 415 Query: 408 LYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 +Y + ++ F V + R GK+ ELALGY G A M Sbjct: 416 IYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAMG------------- 462 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 A+ + + +WR+ + +++LW ++ Sbjct: 463 ---------------------------ALNMGLTEDELQPLVASWRETNPAITKLWWDID 495 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN-- 581 A + + G + + + + L SGR L Y +G NR Sbjct: 496 SAAKGCVSVGAKTETHG------ITFEYKSGFMFIQLLSGRRLAYVKPRIGQNRFGGAAV 549 Query: 582 -----TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 TT++ R +YG K ENIVQA++RDIL M N Y IV VHDE++ E Sbjct: 550 TYEGVGTTKKWERLESYGPKFVENIVQAMARDILCFAMQNL--KDYRIVGHVHDEVIIEV 607 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + +M+ P+WAKGL L A+GYE Y+K Sbjct: 608 PKE--VTVEEVNSIMSQTPNWAKGLLLNADGYECDFYQK 644 >gi|254975142|ref|ZP_05271614.1| DNA polymerase [Clostridium difficile QCD-66c26] gi|255314269|ref|ZP_05355852.1| DNA polymerase [Clostridium difficile QCD-76w55] gi|255516949|ref|ZP_05384625.1| DNA polymerase [Clostridium difficile QCD-97b34] gi|255650051|ref|ZP_05396953.1| DNA polymerase [Clostridium difficile QCD-37x79] gi|260686788|ref|YP_003217921.1| dna-directed dna polymerase i [Clostridium difficile R20291] gi|306519586|ref|ZP_07405933.1| dna-directed dna polymerase i [Clostridium difficile QCD-32g58] gi|260212804|emb|CBE03971.1| dna-directed dna polymerase i [Clostridium difficile R20291] Length = 652 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 222/701 (31%), Positives = 336/701 (47%), Gaps = 76/701 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +D+ K G+ +Y + + ++LFA+ FD+ V++ D V+D +P+ + Sbjct: 1 MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL + V A N+ FERT + N+++ + W CT++ A + GLP +L +V +ALK Sbjct: 61 EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120 Query: 119 --SSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 QKM+EGK LI FCK RN P H E W F EYCK DV V REI Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180 Query: 173 KRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +L + E+E+ WYLDQ IND G VD L + KL +E +T + Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++ +LK WL + G + LT+ + +L +++ R S++++ K Sbjct: 239 NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDEN--VVRILELRKLMSKTSIKK 296 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348 + A +D R+RG LQF GA+RTGRW+G + QNLP+ +L + + Sbjct: 297 YEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFD 356 Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 ++S +R+ I SEG + +V+D + IEARV+AW AGE+W+L F + Sbjct: 357 LIELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWFAGEKWRLDVFNSHGK 416 Query: 408 LYVTTYARSFNVAPA--QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 +Y + + F V + R GK+ ELALGY G A M + Sbjct: 417 IYEASASHMFKVPIESIKKGDPLRQKGKISELALGYGGSIGALTSMGAIK---------- 466 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + WR + +++ W ++ Sbjct: 467 ------------------------------MGLDEEELQPLVTTWRNANPNITKFWWDVD 496 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDV-------GNN 576 +A ++ I++ + + + + L + LPSGR L Y + G+ Sbjct: 497 KAAKKAIKDRTIVKLQ-----HGIKFIYNPGVLFIELPSGRRLSYLRPKIEPHTTFSGDK 551 Query: 577 RSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 +Y + T++Q R TYG KL ENIVQA +RD L E M N T AGY IV+ VHDE+V Sbjct: 552 ITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHDELVI 611 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + + +M SWAKGLPLKA+GYE Y+K Sbjct: 612 DVDKK-GGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651 >gi|153938384|ref|YP_001391676.1| DNA-directed DNA polymerase I [Clostridium botulinum F str. Langeland] gi|152934280|gb|ABS39778.1| DNA-directed DNA polymerase I [Clostridium botulinum F str. Langeland] Length = 658 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 224/702 (31%), Positives = 323/702 (46%), Gaps = 76/702 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + TL ID ET S +D+ G KY E D ++LFA+ F+D PV++ D + +P + Sbjct: 5 IDTLSIDVETYSSMDIKTSGAYKYCESPDFEILLFAYAFNDEPVQIVDLANGEKLPSNVF 64 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + ++ A N+ FER +K + P +W CT+V A + GLPS+L VG+ALK Sbjct: 65 YALTDPNIIKTAFNANFERNSIKNQYPALCPPEQWECTMVKALTLGLPSSLDMVGKALKF 124 Query: 119 --SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 QKM+EGK LI F CK RN P H E W F EYCK DV V REI Sbjct: 125 EEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVEREIR 184 Query: 173 KRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 L +K +E W LDQ INDRG D+ L + +L + LT + Sbjct: 185 NLLNRYETKVEEQKLWQLDQHINDRGIGTDLILIKQAIECDTNYTERLTKAAIELTG--L 242 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT-PQAIQVFNNRMRASRSAVL 289 + ++K W+ G ++ LT+T+ ++ L + I++ R +++++ Sbjct: 243 ENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEATSLNKSEVIKMLELRQLMAKTSIK 302 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HL 346 K +T+ A DGR+RG LQF GA+RTGRW+G + QNLP+ + + Sbjct: 303 KYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVREGKF 362 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 +S +R+ I EG + +V+D + IEARV+AW AGEQW+L F T Sbjct: 363 QEVEFLFDSVPDTLSQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLDVFSTHG 422 Query: 407 DLYVTTYARSFNVAPA--QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 +Y + ++ F VA + + R GK+ ELALGY G A M + Sbjct: 423 KIYEASASQMFKVAIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKKSIPEEELP- 481 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + K+WR + +++ W ++ Sbjct: 482 ----------------------------------------GLVKSWRNANPNITKFWWDV 501 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS------ 578 +A ++ I + + + D L + LPSGR L Y Sbjct: 502 DKAAKKVIRERTTVNLQYG-----LKFIYDPGVLFIQLPSGRKLSYIRPKIEPHETFSGD 556 Query: 579 -----YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + T++Q R TYG KL ENIVQA SRD L E M KAGYDIV+ VHDE+V Sbjct: 557 KITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVDKAGYDIVMHVHDEVV 616 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + P + LM WA GLPLKA+GYE Y+K Sbjct: 617 LDIPKDRA-TVKEINELMGQPIEWAPGLPLKADGYECNYYQK 657 >gi|323484113|ref|ZP_08089483.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum WAL-14163] gi|323402555|gb|EGA94883.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum WAL-14163] Length = 646 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 215/695 (30%), Positives = 327/695 (47%), Gaps = 75/695 (10%) Query: 3 TLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 L ID ET S +DL KCG+ YA+ V+LFA+ FD ++ D +P + A Sbjct: 4 ILEIDIETYSDVDLIKCGVYAYADSPAFEVLLFAYSFDGGETQVIDLAQGEELPGEVSAA 63 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + + DV A N+ FERT L F + W C+ V A LP +L+ VG L L Sbjct: 64 IFDDDVMKTAFNANFERTCLSKHFGKQLSPESWHCSAVQAAMLALPRSLEEVGAVLGLEQ 123 Query: 121 QKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLE 176 QKM+EGK+LI F CK RN P + E W LF YC DV V +EI ++L+ Sbjct: 124 QKMKEGKDLIRYFCMPCKPTKANGGRTRNLPCHAPEKWELFKSYCIRDVDVEKEIRRKLQ 183 Query: 177 --PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 P+ E EL+ LDQ INDRG VD L + + + + LT + + Sbjct: 184 HFPIPESEMELYRLDQKINDRGVLVDRELVRQAVSCDLLYKDVVTKRAYELTG--LENPN 241 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 + ++K+WL G+ +E L++ T ++ + ++ R+ ++++V K + Sbjct: 242 SVAQIKSWLGE-NGVEMESLSKKTVAGLIEE---SDGEVQELLRLRLLMAKTSVKKYEAM 297 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL---PTSIT 351 ++ SDGR+ G LQF GA+RTGRW+G + QNLP+ E+ + + Sbjct: 298 ERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHILDLEMARNLVKQGRFEDVEL 357 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 ++S+ +R+ I G + VVAD + IEARVLAW++GE+W+L+ F + +Y Sbjct: 358 LYDSTPNVLSELIRTAFIPKPGYRFVVADFSAIEARVLAWLSGERWRLEVFASHGKIYEA 417 Query: 412 TYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 + + F+V +VTK GK+ ELALGY G A M Sbjct: 418 SASAMFHVPIEEVTKGSPFRQKGKISELALGYGGAVGALTSMG----------------- 460 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A++ + + AWR + +++ W ++ A Sbjct: 461 -----------------------ALDMGLVEEELAPLVSAWRSANPHITQFWWDVDAAAV 497 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT--- 584 + + K A + + + L + LPSGR L Y + N+ N T Sbjct: 498 KAVTEKKKTRAGR------IVFEYKSGILFVELPSGRKLSYVKPRMALNKFGRNGLTYEG 551 Query: 585 ----RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 ++ R TYG KL ENIVQ +RD+LAE M+ + GY IV+ HDEI+ E P+ Sbjct: 552 IAENKKWDRIETYGPKLVENIVQGTARDLLAEAMLRVEEMGYPIVMHCHDEIIAEVPEGT 611 Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + +M P WA GLPL+A+GYE Y+K Sbjct: 612 -GSVEEMCAVMAVQPEWADGLPLRADGYECAFYKK 645 >gi|284048474|ref|YP_003398813.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] gi|283952695|gb|ADB47498.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] Length = 662 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 206/717 (28%), Positives = 315/717 (43%), Gaps = 98/717 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S ++L KCG+ KYAE ++LF + D PV++ D +P+ + Sbjct: 1 MKTLSIDIETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGPVQVVDLAQGESIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACF--------------------NLDIPIHRWICTLV 98 +AL + VT A N+ FER L + W C++V Sbjct: 61 DALTDDTVTKWAFNANFERVCLSRHLTDLGRSLDPFHDQHPLSKKCARFLNPAGWKCSMV 120 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAW 154 + GLP +L+ VG L L +QKM+EG+ELI F CK RN P H + W Sbjct: 121 WSAYLGLPLSLEGVGAVLNLDNQKMKEGRELIRYFCIPCKETKANGGRTRNLPQHALDKW 180 Query: 155 RLFGEYCKGDVTVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 LF Y K DV V I +R P+ + E ++LDQ INDRG +D+ LA + Sbjct: 181 NLFKSYNKRDVEVEMAIQQRLQKYPVPKQVWEEYHLDQEINDRGIAIDLELAKQAVALDA 240 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 R L L+ T + + + ++ WL + GL + L + Q +L + ++ Sbjct: 241 KSRESLMAALKERTG--LENPNSVIQMLDWL-EQHGLKTDSLGKKNVQELLKTAQEP--- 294 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 V R + ++S+V K + DGR RG QF GA+RTGR++G QNLP+ Sbjct: 295 LRSVLLLRQKLAKSSVKKYQAMEMTACKDGRARGMFQFYGANRTGRFAGRHIQLQNLPQN 354 Query: 333 SRSHEELDQIIT---HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 + + + ++S +R+ + G K VV+D + IEARV+ Sbjct: 355 HLPDLSEARELVRQGNYEALDLLYDSIPDVLSQLIRTAFVPRAGMKFVVSDFSAIEARVI 414 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKA 447 +W+AGE+WK + F G+D+Y +T ++ F V + + R GK+ ELA GY G A Sbjct: 415 SWLAGERWKSEDFAAGKDIYCSTASQMFGVPVVKHGINGNLRQKGKIAELACGYGGSVGA 474 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + M A++ + Sbjct: 475 LKAMG----------------------------------------ALDMGIPEEELGNLV 494 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 ++WR + + + W ++ A + TI+ + V + L + LPSGR Sbjct: 495 QSWRSANPHIVDFWWQVDGAVKTTIKQRIPV------WVNNIRFFCQSGMLFIELPSGRR 548 Query: 568 LVY--RDVGNNRSYLNT-------TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 L Y +G NR + T++ + +YG K ENIVQ +SRDIL M Sbjct: 549 LSYVKPRIGENRFGGESVTYEGIGATKKWEQLESYGPKFVENIVQGISRDILCYAMQTL- 607 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV VHDE++ E P + + M P WA+GL L+A+GY + Y+K Sbjct: 608 -RCCAIVGHVHDELIIECPKD--TSVDAICEEMGRTPPWAEGLVLRADGYACEFYQK 661 >gi|167630957|ref|YP_001681456.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1] gi|167593697|gb|ABZ85445.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1] Length = 646 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 210/701 (29%), Positives = 315/701 (44%), Gaps = 82/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +DL K G+ +Y E D ++LF + D V++ D + +P + Sbjct: 1 MRALNIDIETYSSVDLAKSGVYRYTESPDFAILLFGYSVDGGEVQVVDLMCSEAIPSKVV 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 +AL + DVT A N+ FER L L + W CT+V + GLP +L+ G Sbjct: 61 DALTDKDVTKWAFNAQFERICLSKWLGLPTGQYLDPMSWRCTMVWSAYMGLPLSLEGTGA 120 Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170 L L QK+ EGK+LI F CK RN P H + W F Y DV Sbjct: 121 VLGLEKQKLTEGKDLIRHFSVPCKPTVSNEGRTRNLPIHAPDKWAAFKAYNLRDVETEMA 180 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I ++L P+ ++LDQ INDRG +D+ L ++ + R+KL + LT Sbjct: 181 IQQKLAKFPVPEGVWGEYHLDQEINDRGVALDMDLVRQAIEMDNRSRSKLTGMIRELT-- 238 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + + ++K WL GL + L + +L + + +V R ++S+V Sbjct: 239 ELENPNSVVQMKQWLSDH-GLETDTLGKKAVVELLKTASEP---LGKVLELRQSLAKSSV 294 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP- 347 K + + +DGR RG QF GA+RTGRW+G + QNLP+ E + + Sbjct: 295 KKYTAMENVVCTDGRARGMFQFYGANRTGRWAGRLIQLQNLPQNHMPDLEQARSLVRSGN 354 Query: 348 --TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +++S+ +R+ + +G K +VAD + IEARV+AW+AGE+W+ + FE+G Sbjct: 355 FAALEMLYDSVPEVLSELIRTAFVPKKGCKFIVADFSAIEARVIAWLAGEKWRQEVFESG 414 Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+Y + ++ F+V + R GK+ ELALGY G A + M Sbjct: 415 GDIYCASASQMFHVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKAMG----------- 463 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 A+E + + AWR + ++ LW + Sbjct: 464 -----------------------------ALEMGLEEEELQPLVSAWRSSNPKIVRLWWD 494 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581 + +A + + R + LPSGR L Y +G NR + Sbjct: 495 IDRAAMKAVRERTTTETHGIR------FSYQSGMFFITLPSGRRLAYVKPRIGQNRFGSD 548 Query: 582 -------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ R +YG KLTENIVQA SRDIL M N IV+ VHDEIV Sbjct: 549 CITYEGVGGAKKWERIESYGPKLTENIVQATSRDILCYAMRNLRH--CSIVMHVHDEIVI 606 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + + M P WAKGL L+A+GYE+ Y+K Sbjct: 607 EA--DRRMSTEAVCKQMGQTPPWAKGLLLRADGYETDFYKK 645 >gi|205375254|ref|ZP_03228044.1| DNA-directed DNA polymerase [Bacillus coahuilensis m4-4] Length = 649 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 229/699 (32%), Positives = 338/699 (48%), Gaps = 75/699 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL KCG+ Y+E D ++LFA+ DD VE+ D +P + Sbjct: 1 MKTLIIDIETYSKVDLVKCGVYAYSESADFEILLFAYAVDDEEVEIVDLASGEKIPANIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +A+ + V A+N+ FERT L F + +P +W CT V A GLP L V + LKL Sbjct: 61 KAMIDPTVIKTAYNANFERTCLAKHFQIPMPPEQWRCTSVHALMLGLPGYLDGVAKCLKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QKM+EGK LI F CK RN P H W F +YCK DV V REI K+ Sbjct: 121 QGQKMKEGKALIRYFSIPCKPTKVNGGRTRNLPKHDPARWDTFKDYCKQDVEVEREIRKK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 LE PL + EQELW LDQ IND G +D L + + + +L +E LT + + Sbjct: 181 LEVFPLPTMEQELWELDQKINDEGVVIDTNLVNHAIKADKAFQDELIEEAVRLTG--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL L+ GL ++ L + + ++S + P+ ++ R S+++V K Sbjct: 239 PNSPAQLKGWL-LKQGLEVDSLAKKNVEALMSEVEN--PEVKRLLELRRAMSKTSVKKYE 295 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTS 349 + ++ SD R+RG LQF GASRTGRW+G + NLPR S ++ + + Sbjct: 296 AMERSVGSDQRVRGLLQFYGASRTGRWAGRLVQIHNLPRNSLKDLQVARELLESGKYEAL 355 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S +R+ I S+G + VVAD + IEARV+AW+AGE+W++ F++ +Y Sbjct: 356 EVLFESVSDVLSQLIRTAFIPSKGHRFVVADFSAIEARVIAWLAGERWRMDVFQSHGKIY 415 Query: 410 VTTYARSFNVAPA--QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + A+ F V R GK+ ELALGY G A +M Sbjct: 416 EASAAQMFKVPIETIDKGSPLRQKGKIAELALGYGGSKGALMQMG--------------- 460 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A+E + AWR+ + ++ +LW + A Sbjct: 461 -------------------------ALEMGLTEDELPELVSAWREANPKIVKLWWGIEAA 495 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---------GNNRS 578 + ++ + + + K L + LPSGRSL Y + Sbjct: 496 AIKAVKEKAVV-----KMQHGLTFHYTKGILFITLPSGRSLAYVRPKIGIDERFGKEQLT 550 Query: 579 YLN--TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 Y ++Q R TYGGKLTENI+QA++RD LA M+ +AGY I VHDE++ + Sbjct: 551 YEGTEQGSKQWGRIPTYGGKLTENIIQAIARDCLAVSMLRLDEAGYRINFHVHDEVILDV 610 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + + ++M + WA GLPL A+ +E+ Y+K Sbjct: 611 PI-ATGSMEEVENIMGQSIDWAPGLPLGADSFETFYYKK 648 >gi|255092532|ref|ZP_05322010.1| DNA polymerase [Clostridium difficile CIP 107932] gi|260683192|ref|YP_003214477.1| dna-directed dna polymerase i [Clostridium difficile CD196] gi|260209355|emb|CBA62784.1| dna-directed dna polymerase i [Clostridium difficile CD196] Length = 652 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 219/701 (31%), Positives = 338/701 (48%), Gaps = 76/701 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +D+ K G+ +Y + + ++LFA+ FD+ V++ D V+D +P+ + Sbjct: 1 MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL + V A N+ FERT + N+++ + W CT++ A + GLP +L +V +ALK Sbjct: 61 EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120 Query: 119 --SSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 QKM+EGK LI FCK RN P H E W F EYCK DV V REI Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180 Query: 173 KRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +L + E+E+ WYLDQ IND G VD L + KL +E +T + Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++ +LK WL + G + LT+ + +L +++ R S++++ K Sbjct: 239 NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDEN--VVRILELRKLMSKTSIKK 296 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348 + A +D R+RG LQF GA+RTGRW+G + QNLP+ +L + + Sbjct: 297 YEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFD 356 Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 ++S +R+ I SEG + +V+D + IEARV+AW+AGE+W+L F + Sbjct: 357 LIELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLDVFNSHGK 416 Query: 408 LYVTTYARSFNVAPA--QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 +Y + ++ F + + + R GK+ EL+ GY G A M + Sbjct: 417 IYEASASQMFKIPIENIKKGSELRQKGKLAELSNGYGGSVGALISMGAIK---------- 466 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + AWR + +++ W ++ Sbjct: 467 ------------------------------MGLKEEELQPIVTAWRNANPNITKFWWDVD 496 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDV-------GNN 576 +A ++ I++ + + + + L + LPS R L Y + G+ Sbjct: 497 KAAKKAIKDRTIVEIQ-----HGIKFIYNPGVLFIELPSSRRLSYLRPKIEPHTTFSGDK 551 Query: 577 RSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 +Y + T++Q R TYG KL ENIVQA +RD L E M N T AGY IV+ VHDE+V Sbjct: 552 ITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHDELVI 611 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + + +M SWAKGLPLKA+GYE Y+K Sbjct: 612 DVDKK-GGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651 >gi|226949733|ref|YP_002804824.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto] gi|226841086|gb|ACO83752.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto] Length = 655 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 229/705 (32%), Positives = 325/705 (46%), Gaps = 81/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S ID+ G KY E D ++LFA+ F+D PV++ D +PQ + Sbjct: 1 MTTLAIDVETYSSIDIKTSGAYKYCEAPDFEILLFAYAFNDEPVQIVDFTQHEALPQRVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLARSNGLPSALKAVGEA 115 +AL + DV A N+ FER+ +K F + P +W CT++ A + GLPS+L VG+A Sbjct: 61 DALYDPDVIKTAFNANFERSAIK--FGVSSLPCPPGQWECTMIKALTLGLPSSLDMVGKA 118 Query: 116 LKL--SSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 LKL QKM+EGK LI FCK RN P H E W F EYCK DV V R Sbjct: 119 LKLEEDKQKMKEGKALIQYFCKPCKPTKTNDKRTRNLPKHDMEKWETFKEYCKRDVEVER 178 Query: 170 EIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 EI L +K +E W LDQ INDRG D+ L + +L + LT Sbjct: 179 EIRNLLNRYETKAEEQKLWQLDQHINDRGIDTDLILIKQAIECDTNYTERLTKAAIKLTG 238 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT-PQAIQVFNNRMRASRS 286 + + ++K W+ G ++ LT+T+ ++ K L + I++ R +++ Sbjct: 239 --LENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEAKDLNKSEVIKMLELRQLMAKT 296 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT-- 344 ++ K +T+ A DGR+RG LQF GA+RTGRW+G + QNLP+ + + Sbjct: 297 SIKKYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVRE 356 Query: 345 -HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +S +R+ I EG + +V+D + IEARV+AW AGEQW+L F Sbjct: 357 GKFEEVEFLFDSVPDTLSQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLDVFS 416 Query: 404 TGEDLYVTTYARSFNVAPA--QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 T +Y + ++ F V + + R GK+ ELALGY G A M + Sbjct: 417 THGKIYEASASQMFKVPIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKKSIPEEE 476 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + K+WR + +++ W Sbjct: 477 LP-----------------------------------------GLVKSWRNANPNITKFW 495 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS--- 578 ++ +A ++ I + + + D L + LPSGR L Y Sbjct: 496 WDVDKAAKKAIRERTTVNLQYG-----LKFIYDPGVLFIQLPSGRKLSYIRPKIEPHETF 550 Query: 579 --------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + T++Q R TYG KL ENIVQA SRD L E M K GYDIV+ VHD Sbjct: 551 SGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVNKEGYDIVMHVHD 610 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E+V + P + LM WA GLPLKA+GYE Y K Sbjct: 611 EVVLDIPKDRA-TVKEINELMGQPIKWAPGLPLKADGYECNYYMK 654 >gi|300856814|ref|YP_003781798.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] gi|300436929|gb|ADK16696.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] Length = 650 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 214/700 (30%), Positives = 310/700 (44%), Gaps = 76/700 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET +D+ K G KY E ++LFA+ F+D PVE+ D +PQ +K Sbjct: 1 MDTLAIDVETYCELDIKKVGAYKYCEHPSFQILLFAYAFNDEPVEVIDFAQGEELPQKVK 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL N + A N+ FE LK I W CT+V + GLP +L VG+ L+ Sbjct: 61 TALLNPGILKTAFNANFEINALKKYLINGIDAEDWQCTMVQSLILGLPGSLDMVGKVLRF 120 Query: 119 --SSQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 QKM+EGK LI FCK RN P H E W +F +Y K DV V R I Sbjct: 121 EEDKQKMKEGKALIQYFCKPCKPTKSNGGRTRNLPEHAPEKWEIFKKYNKQDVEVERAIR 180 Query: 173 KR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + P + EQ LW LDQ INDRG D+ L + + +L +E LT + Sbjct: 181 NKLNRYPTTENEQRLWELDQCINDRGVGADIELIEKAIECNNSYNKRLTKEATELTG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 S+ +LK W+ G ++ LT+ + ++ + ++ R +++++ K Sbjct: 239 SNPNSPTQLKRWIGERVGHEVKSLTKDSIPTLIKE--SKDEKVKKILELRQLMAKTSIKK 296 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLP 347 T+ A DGR+RG LQF GA+RTGRW+G + QNLP+ + + Sbjct: 297 YETMQRARCEDGRMRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDDARNFIRTGQFD 356 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +S +R+ I EG + +VAD + IEARV+AW AGEQW+L F D Sbjct: 357 KVEFLYDSIPDTLSQLIRTAFIPKEGNRFIVADFSAIEARVIAWYAGEQWRLDVFNNNGD 416 Query: 408 LYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 +Y + ++ F V + R GK+ ELALGY G A M + + Sbjct: 417 IYCASASKMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALMSMDKKKNIPEDELP-- 474 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + K WR +++ W ++ Sbjct: 475 ---------------------------------------GLVKDWRDASPHITKFWWDVD 495 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN--------R 577 +A ++ I ++ + + D L + LPSGR L Y Sbjct: 496 KAAKKAIRERTTVVLQ-----FGLKFIYDPGVLFIQLPSGRKLAYIRPKIEPGPYDKPII 550 Query: 578 SYLN--TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 +Y T++Q T TYG K+ ENIVQA +RD L M G+ IV+ VHDE++C+ Sbjct: 551 TYEGLQQTSKQWTTLETYGPKIVENIVQATARDCLGITMQRVEDKGFHIVMHVHDELICD 610 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + + + WA GLPLKA+GYE Y K Sbjct: 611 VPKG-KGTVEEICDIFGEPIEWAPGLPLKADGYECNYYMK 649 >gi|153955279|ref|YP_001396044.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555] gi|219855702|ref|YP_002472824.1| hypothetical protein CKR_2359 [Clostridium kluyveri NBRC 12016] gi|146348137|gb|EDK34673.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555] gi|219569426|dbj|BAH07410.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 644 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 206/699 (29%), Positives = 318/699 (45%), Gaps = 80/699 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M ++ ID ET S +L KCG+ +YAE D ++LF + D V++ D +P + Sbjct: 1 MNSISIDIETFSSANLQKCGVYRYAESDDFEILLFGYSVDGGAVQVVDLACGEKIPNEII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 AL + VT A N+ FER L NL + W C++V + GLP +L+ VG L Sbjct: 61 NALMDNSVTKWAFNAMFERVCLSKWLNLTDYLDPTSWKCSMVWSAYMGLPLSLEGVGAVL 120 Query: 117 KLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 L QK+ EGK+LI FC RN P H + W F Y DV I Sbjct: 121 GLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPKHDMDKWERFKAYNIRDVEAEMSIQ 180 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +RL P+ ++LDQ INDRG +D+A ++ + R KL ++ +T + Sbjct: 181 QRLSKFPIPENIWSEYHLDQKINDRGIAIDMAFVKQAVKMDEQSREKLMALMQDITN--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++++K WL + GL + L + +L + + R + ++S++ K Sbjct: 239 ENPNSIQQMKEWL-ADNGLETDSLGKKAVAEMLKTAPEPLGTV---LELRQQLAKSSIKK 294 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLP 347 + A+ +DGR RG QF GA+RTGR+SG + QNLP+ E + + + Sbjct: 295 YTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNFD 354 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +++S+ +R+ + EG K +VAD + IEARV+AW+AGE+W++ F+ G D Sbjct: 355 ALTLIYDSIPEVLSELIRTAFVPQEGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNGGD 414 Query: 408 LYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 +Y + ++ FNV + R GK+ ELALGY G A + M Sbjct: 415 IYCASASQMFNVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKSMG------------- 461 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 A+E + + AWRQ + +++LW ++ Sbjct: 462 ---------------------------ALEMGIEEEELQPLVTAWRQSNPNITKLWWDVD 494 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNNR 577 A + ++ + L ++LPSGR L Y G + Sbjct: 495 HAVKTCVKQKIPTETHG------IKFIYQSGMLFIVLPSGRRLSYVKPRMGENVFGGESV 548 Query: 578 SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 +Y T++ R +YG K ENIVQA+SRDIL M IV VHDEI+ E Sbjct: 549 TYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTL--KNCSIVAHVHDEIIIEA 606 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + S + M P+WA GL L A+GYE + Y+K Sbjct: 607 --DMRMSLSTICEQMARTPTWANGLLLSADGYECQFYQK 643 >gi|220930425|ref|YP_002507334.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] gi|220000753|gb|ACL77354.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] Length = 652 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 217/699 (31%), Positives = 331/699 (47%), Gaps = 75/699 (10%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59 L ID ET S +DL KCG+ +Y E D ++LFA+ +DD P+ + D +P+ + + Sbjct: 3 KILSIDIETYSSVDLIKCGVYRYVEAPDFEILLFAYAYDDEPITVIDLADFEELPEQVTK 62 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 L + DV A+N+ FERT + +N +P +W CT V A + GLP L V + L L Sbjct: 63 DLTDPDVIKAAYNANFERTCIAKFYNKPMPPEQWRCTSVHALTLGLPGNLDGVAKVLGLD 122 Query: 120 SQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKRL 175 +QK GK LI F CK RN P+H + W+ F +YCK DV V R I K++ Sbjct: 123 AQKDTAGKNLIKYFSVPCKPTKVNGGRTRNFPHHAPDKWKQFKDYCKQDVVVERAIRKKI 182 Query: 176 --EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 P+ E +LW LDQ IND G +D L + T+LD E + LT + + Sbjct: 183 EKYPVPEHEWKLWTLDQKINDAGVRLDPVLVQQALKCDLQYATRLDAEAKELTG--LDNP 240 Query: 234 RCLEKLKTWLFLETGLHLEDL-TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L WL + GL +++ + +L K ++ R S+++ K Sbjct: 241 NSTTQLTVWL-KKQGLTVDNGLGKDYIPGLLDQ-AKGDETVTRMLELRKEMSKTSTKKYE 298 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTS 349 + AM SD R RG LQF GA+RT RW+G + QNLP+ + + + Sbjct: 299 AMERAMCSDDRARGLLQFCGANRTWRWAGRLIQVQNLPQNKIPDLGVARELLHSGKFEAI 358 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 P ++S +R+ I S+G + +V+D + IEARV+AW+AGE W++K F++ +Y Sbjct: 359 ELLFNSPPFVLSQLIRTAFIPSDGCRFIVSDFSAIEARVIAWLAGESWRMKVFKSHGKIY 418 Query: 410 VTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 + + F+V ++TK R GK+ ELALGY G A + M + GL+ + Sbjct: 419 EASASHMFHVPIEEITKGNPLRQKGKIAELALGYGGSIGALEAMGALKMGLDADELP--- 475 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + AWR + ++ +LW ++ + Sbjct: 476 --------------------------------------DLVTAWRNSNPKIVKLWWDVDK 497 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS-------- 578 A + + R + L + LPSGR L Y Sbjct: 498 AAMTAVREHMPV-----RIQYGITFSYKDGFLFIKLPSGRKLAYVKPKIKDGKFGRPALT 552 Query: 579 --YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 ++ + R TYG KL ENIVQAV+RD LA M+ AGYDI + VHDE++ + Sbjct: 553 YEGMDQIKKTWERIDTYGPKLVENIVQAVARDCLAVNMLRLDDAGYDIRMHVHDEVILDV 612 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P+TD + + +M+ WA GLPL+A+GYE++ Y+K Sbjct: 613 PNTDTDALAQVNEIMSQPIDWAPGLPLRADGYETEFYKK 651 >gi|57234138|ref|YP_181815.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes 195] gi|57224586|gb|AAW39643.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes 195] Length = 662 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 209/717 (29%), Positives = 316/717 (44%), Gaps = 98/717 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S IDL KCG+ KYAE + ++LF + D V++ D +PQ + Sbjct: 1 MKNISIDIETFSDIDLNKCGVYKYAESPNFEILLFGYAVDGGKVQVIDLAQGEHIPQEII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKAC---FNLD-----------------IPIHRWICTLV 98 +AL + +VT A N+ FER L + + W C++V Sbjct: 61 DALTDDEVTKWAFNANFERVCLSRYLSDLGVSLDPFHDNHPLSTECARFLNPEGWRCSMV 120 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAW 154 A + GLP +LK VG+ LKL QKM+EGK LI F C RN P H E W Sbjct: 121 WAATMGLPLSLKGVGQVLKLEDQKMDEGKALIKYFSVPCAPTKANGGRTRNMPFHDPEKW 180 Query: 155 RLFGEYCKGDVTVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 F Y K DV V I +RL P+ + + +DQ INDRG +D+ L ++ Sbjct: 181 ETFKAYNKRDVEVEMAIQQRLTNFPVPDFVWDEYRIDQEINDRGVRLDMDLVAKAIEMDT 240 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 RT+L ++ +T + + ++++K WL GL + L + ++ + + Sbjct: 241 RSRTELTTAMKDIT--ELDNPNSVQQMKQWLSD-NGLETDSLGKKVVAELIKTAPS---E 294 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 V R + ++S+V K T+ A+ DGR RG F GA+RTGRW+G + QNLP+ Sbjct: 295 LQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFMFYGANRTGRWAGRLIQLQNLPQN 354 Query: 333 SRSHEELDQIITH---LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 + + D +S +R+ I +G +L V+D + IEARV+ Sbjct: 355 HLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQLYVSDFSAIEARVI 414 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKA 447 AW AGE W+ K F G D+Y + ++ F+V + R GK+ ELALGY G A Sbjct: 415 AWYAGEMWRQKVFADGGDIYCASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGA 474 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + M + E + Sbjct: 475 LKAMGAI----------------------------------------EMGLSEDELPPLV 494 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 AWRQ + + + W ++ +A + +++ + + L + LPSGR+ Sbjct: 495 DAWRQTNPHIVKFWWDVDRAVMEAVKHKHTTSSYG------LTFSCRSGMLFITLPSGRN 548 Query: 568 LVYRDV--------GNNRSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 L Y G +Y T++ R +YG K ENIVQA SRDIL M Sbjct: 549 LAYVKPKVGTNKFGGECITYEGVGATKKWERLDSYGPKFVENIVQATSRDILCYAMKTL- 607 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +IV+ +HDE+V E + +L M P WA+GL L+A+GY + Y+K Sbjct: 608 -RNCEIVMHIHDELVIEA--DPHMSLDVLCEQMGRTPPWARGLQLRADGYTTPFYKK 661 >gi|42779458|ref|NP_976705.1| DNA polymerase I [Bacillus cereus ATCC 10987] gi|42735374|gb|AAS39313.1| DNA polymerase I [Bacillus cereus ATCC 10987] Length = 644 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 204/699 (29%), Positives = 313/699 (44%), Gaps = 80/699 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M ++ ID ET S +L K G+ +YAE D ++LF + D V++ D +P + Sbjct: 1 MNSISIDIETFSGANLQKSGVYRYAESDDFEILLFGYSVDGGEVQVVDLACGEEIPDEII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 AL + VT A N+ FER L NL + W C+++ + GLP +L+ VG L Sbjct: 61 NALLDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMIWSAYMGLPLSLEGVGAVL 120 Query: 117 KLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 L QK+ EGK+LI FC RN P H + W F Y DV I Sbjct: 121 GLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKAYNLRDVEAEMSIQ 180 Query: 173 KRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +R E ++LDQ INDRG +D+ + + R KL ++ +T + Sbjct: 181 QRFSKFLVPENIWEEYHLDQEINDRGIAIDMTFVKQAVVMDEHSREKLMALMQDITN--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++++K WL + GL + L + +L + + R + ++S+V K Sbjct: 239 ENPNSVQQMKDWL-ADNGLETDTLGKKAVAEMLKTAPEPLGTV---LELRQQLAKSSVKK 294 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLP 347 + A+ +DGR RG QF GA+RTGR+SG + QNLP+ E + + + Sbjct: 295 YTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNFD 354 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +++S+ +R+ I EG K +VAD + IEARV+AW+AGE+W++ F+ G D Sbjct: 355 ALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNGGD 414 Query: 408 LYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 +Y + ++ FNV + R GK+ ELALGY G A + M Sbjct: 415 IYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG------------- 461 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 A+E + + AWRQ + +++LW ++ Sbjct: 462 ---------------------------ALEMGIEEEELQPLVTAWRQSNPNITKLWWDVD 494 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNNR 577 +A + ++ + L + LPSGR L Y G + Sbjct: 495 RAVKTCVKQKTPTETHG------IKFIYQSGMLFIALPSGRRLAYVKPRMGENMFGGESV 548 Query: 578 SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 +Y T++ R +YG K ENIVQA+SRDIL M IV VHDEI+ E Sbjct: 549 TYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTL--KNCSIVAHVHDEIIIEA 606 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + S + M P+WA GL L A+GYE + Y+K Sbjct: 607 --DMGTSLSAICEQMAKMPTWANGLLLSADGYECQFYQK 643 >gi|255306559|ref|ZP_05350730.1| DNA polymerase [Clostridium difficile ATCC 43255] Length = 652 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 219/701 (31%), Positives = 336/701 (47%), Gaps = 76/701 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +D+ K G+ +Y + + ++LFA+ FD+ V++ D V+D +P+ + Sbjct: 1 MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL + V A N+ FERT + N+++ + W CT++ A + GLP +L +V +ALK Sbjct: 61 EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120 Query: 119 --SSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 QKM+EGK LI FCK RN P H E W F EYCK DV V REI Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180 Query: 173 KRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +L + E+E+ WYLDQ IND G VD L + KL +E +T + Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++ +LK WL + + LT+ + +L ++ R S++++ K Sbjct: 239 NNPNSPAQLKKWLSDKVSFEITSLTKESIPEILKQVDDEN--VVRTLELRKLMSKTSIKK 296 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348 + A +D R+RG LQF GA+RTGRW+G + QNLP+ +L + + Sbjct: 297 YEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFD 356 Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 ++S +R+ I SEG + +V+D + IEARV+AW+AGE+W+L F + Sbjct: 357 LIELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLDVFNSHGK 416 Query: 408 LYVTTYARSFNVAPA--QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 +Y + ++ F V + + R GK+ EL+ GY G A M + Sbjct: 417 IYEASASQMFKVPIESIKKGSELRQKGKLAELSNGYGGSVGALISMGAIK---------- 466 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + AWR + +++ W ++ Sbjct: 467 ------------------------------MGLKEEELQPIVTAWRNANPNITKFWWDVD 496 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDV-------GNN 576 +A ++ I++ + + + + L + LPS R L Y + G+ Sbjct: 497 KAAKKAIKDRTIVEIQ-----HGIKFIYNPGVLFIELPSSRRLSYLRPKIEPHTTFSGDK 551 Query: 577 RSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 +Y + T++Q R TYG KL ENIVQA +RD L E M N T AGY IV+ VHDE+V Sbjct: 552 ITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHDELVI 611 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + + +M SWAKGLPLKA+GYE Y+K Sbjct: 612 DVDKK-GGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651 >gi|134299054|ref|YP_001112550.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1] gi|134051754|gb|ABO49725.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1] Length = 650 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 229/699 (32%), Positives = 322/699 (46%), Gaps = 74/699 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +DLTK G+ YAE D ++LF + FDD PV+L D +P + Sbjct: 1 MTILGIDIETYSRVDLTKSGVYAYAEAEDFEILLFGYAFDDEPVQLIDLASGEQLPDNVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + ++ A N+ FERT + FN +P +W CT V A + GLP L V + L L Sbjct: 61 NALTDPEIIKTAFNANFERTCIAKHFNRPMPPEQWRCTHVHALTLGLPGHLGDVAKVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK GK LI F CK RN P H + W F YCK DV V R+I K Sbjct: 121 KQQKDTAGKALIRYFSMPCKPTKVNGQRTRNLPEHDPDRWAKFKSYCKQDVAVERDIRKT 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 LE P+ E +LW LDQ IND G VD L + KL + LT + + Sbjct: 181 LERFPVIEAEHKLWCLDQRINDGGVLVDSQLVTNAIACDTQYQDKLMAKAAKLTG--LDN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + + +LK WL GL +E L + + +L + T Q+ R ++++V K Sbjct: 239 PKSVSQLKQWLLKTDGLEVESLNKESVPELLKQTESST--VKQMLELRQEMAKTSVKKYL 296 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTS 349 + A DGR+RG LQF GA+RTGRW+G + QNLPR S + + + Sbjct: 297 AMERAKGKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPRNSIKDLDQARQLLKAGDYEML 356 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S +R+ + EG + +VAD + IEARV+AW+A E+W++ F T +Y Sbjct: 357 ELLFESVPTVLSQLIRTAFVPKEGHRFIVADFSAIEARVIAWLADEKWRMDVFRTHGKIY 416 Query: 410 VTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + + F+V ++TK R GKV ELALGYQGG A M Sbjct: 417 EASASAMFHVPIEEITKGNPLRQKGKVSELALGYQGGPGALIAMG--------------- 461 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A+++ + K WRQ + + W + A Sbjct: 462 -------------------------ALKEGLTEEELPGLVKLWRQSSPNIVKFWYDTEAA 496 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS--------- 578 + ++ + ++ + L + LPSGR L Y + Sbjct: 497 AIKAVKEKTTVELH-----HGIHFIYESGILFIRLPSGRRLAYIKPRIQNNPRLDKPALT 551 Query: 579 --YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 T+Q R YTYGGKL ENIVQAV+RD LAE ++ AGY V+ VHDE V E Sbjct: 552 YEGQEQGTKQWGRLYTYGGKLVENIVQAVARDCLAEALLRLDVAGYKTVMHVHDESVMEM 611 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + +M WA GLP++A+G+ES Y+K Sbjct: 612 PHG-VGSLEDACRIMEQPIPWAPGLPMRADGFESNYYKK 649 >gi|332983347|ref|YP_004464788.1| DNA-directed DNA polymerase [Mahella australiensis 50-1 BON] gi|332701025|gb|AEE97966.1| DNA-directed DNA polymerase [Mahella australiensis 50-1 BON] Length = 657 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 208/710 (29%), Positives = 323/710 (45%), Gaps = 89/710 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M LFID ET S DL K G+ +Y+E D V+LF + DD V + D +P + Sbjct: 1 MRELFIDIETYSGTDLGKSGVYRYSEAPDFEVLLFGYCADDDEVRVIDLASGEALPTEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACF---NLDIP----------IHRWICTLVLARSNGL 105 +AL + V AHN+ FER L +++ W CT+V + GL Sbjct: 61 DALTDETVVKWAHNAQFERVCLSRWLERQGINLKALNGNSNFLNPASWRCTMVWSAYLGL 120 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYC 161 P +L+ QK+ EGKELI F CK RN P H + W + EY Sbjct: 121 PLSLEGAALVTGAEKQKLTEGKELIRYFSSPCKPTKSNGGRTRNLPVHAPDKWEKYKEYN 180 Query: 162 KGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 DV I KRL P+ E + + LDQ INDRG C+D+ L + RT L Sbjct: 181 ARDVETEMAIMKRLSKFPVPEDEWKYYILDQEINDRGICLDMDLIREAIRCDRRSRTVLT 240 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + + +T + + + ++K W F E GL E L + + +L + + + Sbjct: 241 EAVRDITD--LDNPNSVAQMKAW-FAENGLETETLGKAAVKELLKTAPESFREV---LAL 294 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++S+V K + A+ SDGR+RG LQF GA+RTGR++G + QNLP+ Sbjct: 295 RQDLAKSSVKKYTAMENAVCSDGRVRGLLQFYGANRTGRFAGRLIQVQNLPQNHLPDLVQ 354 Query: 340 DQIITH---LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + + ++S+ +R+ + G K +VAD + IEARV+AW+AGEQ Sbjct: 355 ARQLVKSGDFDALEILYDSVPGVLSELIRTAFVPMPGYKFIVADFSAIEARVIAWLAGEQ 414 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMAST 454 W+ + F + +Y + ++ F V ++TK R GK+ ELALGY G A + M Sbjct: 415 WRNEVFASHGKIYEASASQMFRVPIEEITKGSPLRQKGKIAELALGYGGSVGALKAMG-- 472 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 A++ + + AWR + Sbjct: 473 --------------------------------------ALDMGLAEDELQPLVTAWRAAN 494 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RD 572 ++ LW ++ +A + + A + + L + LPSGR L Y Sbjct: 495 PNITRLWWDVDRAAKTAVREKTAEQT------HNILFEYRSGFLFITLPSGRKLAYVKPR 548 Query: 573 VGNNRSYLNT-------TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 + NR ++ +++ R +YG K ENIVQA+SRDIL M + G+ IV Sbjct: 549 IEANRFGSDSITYEGVGASKKWERIESYGPKFVENIVQAISRDILCYAMQRLSSMGFSIV 608 Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + +HDE+V ET + + + ++ +M+ P WA+GL L A+G+E + Y+K Sbjct: 609 MHIHDEVVIET--SCDVSPEIVCRIMSETPPWAEGLFLCADGFECQFYKK 656 >gi|297587100|ref|ZP_06945745.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516] gi|297575081|gb|EFH93800.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516] Length = 643 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 225/697 (32%), Positives = 334/697 (47%), Gaps = 77/697 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +DL K G+ KYAE D ++LFA+ +D V++ D + ++P+ + Sbjct: 1 MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSINDGEVKVIDLANGEIIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + +V A N+ FER L + W CT++ + GLP +L+ VGE LKL Sbjct: 61 SALSDENVEKWAFNANFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QKM EGK LI F CK + RN +H E W F EY + DV I K+ Sbjct: 121 DKQKMNEGKALIRYFSTPCKPTKTNGMRIRNLSHHDLEKWSTFKEYNQRDVETEMAIKKK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+S E E +++DQ INDRG +D L + + + R + LT + + Sbjct: 181 LSAFPMSHSEWENYWIDQNINDRGILIDEVLVDSAIKFDGILREENMDRAIELTG--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + GL ++ L + + V S+ K +V R S+S+V K + Sbjct: 239 PNSPLQLKEWLNKK-GLEIDSLAK---KDVESALKNTEGDIKEVLELRQELSKSSVRKYD 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LPTS 349 + D R RG +QF GA+RTGR+SG + QNL R + +L + + T Sbjct: 295 AMKNVKGKDNRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARSLVKNRDYETM 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 P I+S +R+ IA EG + +++D + IEARVLAW+AGEQW L AFE GED+Y Sbjct: 355 EILYESPSDILSQLIRTAFIAKEGTRFIISDFSAIEARVLAWLAGEQWVLDAFENGEDIY 414 Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 T +R F V + R GK+ LA GYQG A + M Sbjct: 415 CRTASRMFGVPVEKHGVNGHLRQKGKIATLACGYQGALGALKAMG--------------- 459 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 IE + + +WR+ + + LW ++ Sbjct: 460 -------------------------GIEMGLSEDELQSIVDSWREANPNIVSLWWDIDSV 494 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR--DVGNNRSYLNTT-- 583 ++ ++ + + + +K L + LPS R L Y +G NR + Sbjct: 495 VKRVVKTRT------KEKYKSLVISYEKGILFIELPSKRRLAYPKAKIGTNRFGGESIVY 548 Query: 584 -----TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 + + +YGGK ENIVQA++RDILAE MM K G++IV+ +HDE+V E Sbjct: 549 EGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIE--- 605 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +D + + +M+ PSWA GL L A+G+ES+ Y+K Sbjct: 606 SDSSSIEEINQIMSLVPSWAPGLILDADGFESEFYKK 642 >gi|153814242|ref|ZP_01966910.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756] gi|145848638|gb|EDK25556.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756] Length = 644 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 206/697 (29%), Positives = 320/697 (45%), Gaps = 76/697 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S + L CG+ +YA E ++LFA+ +D P ++ D MP+ + Sbjct: 1 MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTKIIDIASGQTMPEEIM 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 E L + V A N+ FER + F L + W CT V A LP +L+ VGEAL L Sbjct: 61 ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKR 174 +KM EGK+LI F CK RN P + E W LF YC DV V ++I + Sbjct: 121 DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVDVEKQIRNK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+ +EQEL+ +DQ INDRG VD L + + + ++ + + Sbjct: 181 LAKFPIPDREQELYCMDQRINDRGIMVDRELISNAVACDLLYKEAASKRAYEISG--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + +LK WL + G+ ++ L + + ++ + ++ R+ S+++V K Sbjct: 239 PNSVSQLKDWLNEK-GIEVDSLAKAAVEELVEK---TEGEVSEMMKLRLSMSKTSVKKYE 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---S 349 + ++ DGR+ G LQF GA+RTGRW+G + NLP+ EL + I Sbjct: 295 AMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSIVKEGRYDLV 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +++S+ +R+ +A G + +V+D + IEARV+ ++AGE W ++ F +Y Sbjct: 355 ELLYDSTPEVLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKIY 414 Query: 410 VTTYARSFNVAPAQVTKDQRAIG--KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 T ++ F++ ++TK KV LA Y G A M + + Sbjct: 415 EQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGALNFVEEE------- 467 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + ++WR + + W E+ A Sbjct: 468 ----------------------------------ELKGLVQSWRTANPHIVNYWYEIDGA 493 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--------NNRSY 579 + ++ K + V + L + LPSGR L Y + SY Sbjct: 494 VKAAVKERKMTTVGR------VTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSESVSY 547 Query: 580 LN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 T R+ TR +YG K ENIVQA +RD+LAE M+ K G+DIV +HDE+V E P+ Sbjct: 548 EGVGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHDEVVLEVPE 607 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + +M P W +GLPLKA G+ES Y+K Sbjct: 608 GT-SSVEEVNEIMAVCPDWCEGLPLKAAGFESPFYKK 643 >gi|116630096|ref|YP_815268.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323] gi|238854131|ref|ZP_04644478.1| DNA polymerase [Lactobacillus gasseri 202-4] gi|116095678|gb|ABJ60830.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain [Lactobacillus gasseri ATCC 33323] gi|238833207|gb|EEQ25497.1| DNA polymerase [Lactobacillus gasseri 202-4] Length = 644 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 208/697 (29%), Positives = 321/697 (46%), Gaps = 76/697 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S +L + G+ +YA+ D ++LF + D PV++ D +PQ + Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDLGPVKVVDLTQGEKIPQPIV 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL++ + A N+ FER L + W C+ V + + GLP +L VG L L Sbjct: 61 KALDDPTIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLSDVGTVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK+ GKEL+ F CK RN P H + W+ F +Y + DV V EI ++ Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKSNQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180 Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 LE E E +++DQ INDRG +D L + + + + Q + LT + Sbjct: 181 LERFPVSQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQENFHDQYLQVSQKLTGLA--N 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL G++++ L++ + ++L + T + QV + R S+S+V K Sbjct: 239 PNSPLQLKDWLNQR-GMNIDSLSKASVAQLLQT---TTGKVHQVLSLRQLLSKSSVKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP---TS 349 + +AM DGR+ G LQF GA+RTGRW+G + QNLPR S E + + Sbjct: 295 AMQKAMCRDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNTTAL 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S +R+ I S+G VAD + +EARV+AW++GE+W+ KAF ED+Y Sbjct: 355 SMLYDSVPDVLSQLIRTAFIPSQGHHFYVADFSAVEARVIAWLSGEEWRQKAFANNEDIY 414 Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + ++ F V + + R GK+ ELALGY G A + M +T Sbjct: 415 CASASQMFGVPVVKHGVNGELRQKGKIAELALGYGGSIGALKAMGAT------------- 461 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + WR + + W ++ +A Sbjct: 462 ---------------------------NLGLTEEELHSLVQMWRNASPHIVQFWWDIDKA 494 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT- 584 ++ I++ + + L L SGR L Y +G NR + T Sbjct: 495 AKECIKSHLPQATHG------IKFIYRSGCMFLRLRSGRKLCYSKPKIGINRFGSESITF 548 Query: 585 ------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 ++ R TYG KL ENIVQA SRD+LAE M AG +V+ +HDE V + P Sbjct: 549 MGINAVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEDAGNPVVMHIHDEAVIDAP- 607 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++ + +MT P WA GL L A G+ S Y+K Sbjct: 608 -ANYSLEKMVKIMTEVPRWADGLILNAAGFVSDFYKK 643 >gi|295114921|emb|CBL35768.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [butyrate-producing bacterium SM4/1] Length = 646 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 206/702 (29%), Positives = 308/702 (43%), Gaps = 84/702 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S L K G+ +Y E D ++LFA+ D PV+ D +P + Sbjct: 1 MQTLSIDLETYSDQPLAKTGVYRYVESPDFEILLFAYSVDGAPVQQIDLACGEKIPSEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 ALE+ VT A N+ FER L + W C++V A GLP +L+ G Sbjct: 61 CALEDDKVTKWAFNANFERICLSRFLGYPTGDYLEPDSWKCSMVWAAYMGLPLSLEGAGA 120 Query: 115 ALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170 L L QK+ EGK+LI FC+ RN P H + W F +Y DV Sbjct: 121 VLGLEKQKLAEGKDLIKYFCQPCAPTKSNGQRTRNLPKHSPDKWLAFKKYNIRDVETEMS 180 Query: 171 IFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I R P+ E ++LDQ INDRG +D+ L Q+ R++L Q ++ LT Sbjct: 181 IQARLLKYPVPDSVWEEYHLDQEINDRGVGLDMELVRQAIQMDGRSRSELTQAMKELT-- 238 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + ++++K WL + G+ + L + +L + Q +V R + ++S+V Sbjct: 239 SLDNPNSVQQMKQWL-ADNGVETDTLGKKAVAELLKT---APQQLQKVLTLRQQLAKSSV 294 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH--- 345 K + A+ +DGR RG QF GA+RTGRW+G + QNLP+ + + Sbjct: 295 KKYQAMETAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLPQNHLDDLTEARGLVRAGG 354 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 D +S +R+ + +K +VAD + IEARV+AW+A E+W+ F G Sbjct: 355 FDALEMLYEDVPDTLSQLIRTAFVPQGNRKFIVADFSAIEARVIAWLADEKWRQDVFAEG 414 Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462 +D+Y + ++ F V + R GK+ ELALGY G A + M + GL+ + Sbjct: 415 KDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMGALEMGLSEDEL 474 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + AWRQ + ++ + W Sbjct: 475 PA-----------------------------------------LVSAWRQANPKIVQFWW 493 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYL 580 + +A + + L + LPSGRSL Y +G NR Sbjct: 494 AVDRAVMDAVTRKTTTKTHG------IIFSARNGMLFITLPSGRSLSYVKPKIGENRFGG 547 Query: 581 N-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + T++ R +YG K ENIVQA SRDIL M IV+ +HDE+V Sbjct: 548 DCITYEGVGGTKKWERIDSYGPKFVENIVQATSRDILCYAMKTL--RCCSIVMHIHDEVV 605 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + + M P WA GL L+A+GYE+ Y+K Sbjct: 606 IEA--DRRMSLQAVCDQMGRTPPWANGLQLRADGYETDFYKK 645 >gi|331083931|ref|ZP_08333040.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403356|gb|EGG82916.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium 6_1_63FAA] Length = 646 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 203/701 (28%), Positives = 308/701 (43%), Gaps = 82/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +L+K G+ +Y E D +ILF + D V++ D +P+ + Sbjct: 1 MKNLEIDIETYSSANLSKSGVYRYVESPDFEIILFGYSIDGGEVKVVDLACGETIPKEVY 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 +ALE+ VT A N+ FER L + W C++V + GLP +L+ VG Sbjct: 61 DALEDDSVTKWAFNAQFERICLSKFLGYKQGTYLEPDSWKCSMVWSAYMGLPLSLEGVGV 120 Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170 L L QK+ EGKELI F C RN P+H E W F Y DV + Sbjct: 121 VLGLEKQKLTEGKELIKYFCTPCNPTKVNGGRMRNLPHHDTEKWERFKAYNIRDVEAEMQ 180 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I RL+ P+ + ++LDQ INDRG VD+ +I +V R L +++ LT Sbjct: 181 IQSRLQKFPVPDFVWDEYHLDQEINDRGIKVDMDFVEKCLEIDNVSRESLMTKMQVLTSL 240 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + ++K WL G+ E L + ++ ++ + ++ R + ++S+V Sbjct: 241 T--NPNSVVQMKGWLSD-NGIETETLGKKAVAALI---DEVPDEMSEILALRQKLAKSSV 294 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 K + ++ DGR+RG QF GA+RTGR++G + QNLP+ + + Sbjct: 295 RKYQAMQNSVCEDGRVRGMFQFYGANRTGRFAGRLVQLQNLPQNHMEDLAEARGLVRSGD 354 Query: 349 ---SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 D +S +R+ I + + +VAD + IEARV+AW AGE W+ F G Sbjct: 355 YDSLDLLYDDIPDTLSQLIRTAFIPTVNESFIVADFSAIEARVIAWFAGESWRADVFAKG 414 Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+Y + ++ F V + R GK+ ELALGY G A + M Sbjct: 415 GDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSTGALKAMG----------- 463 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 A+E + AWR + + W + Sbjct: 464 -----------------------------ALEMGLAEEELPELVSAWRCSNPNIVRFWWD 494 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GN 575 + A ++ I++ + V+ L + LPSGR L Y G Sbjct: 495 VDSAVKKAIKSKTSTATHG------VHFSCRSGMLFITLPSGRVLSYVKPCMGENKFGGE 548 Query: 576 NRSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + +Y +T++ R +YG K ENIVQA SRDIL M IV VHDEI+ Sbjct: 549 SVTYEGVGSTKKWERLESYGPKFVENIVQATSRDILMYAMKTL--RCCSIVAHVHDEIII 606 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + + M P WA+GL L+A+GYE + Y+K Sbjct: 607 EA--DPRMSLDAICEQMGRTPPWAEGLLLRADGYECQFYKK 645 >gi|57233569|ref|YP_180826.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes 195] gi|57224017|gb|AAW39074.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes 195] Length = 646 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 200/702 (28%), Positives = 309/702 (44%), Gaps = 84/702 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M +L ID ET S +L K G+ +Y E D ++LF + D V++ D +P + Sbjct: 1 MKSLSIDIETYSSANLAKSGVYRYVESPDFEILLFGYSVDGGEVQVVDLTSGEKLPSDVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 AL + V A N+ FER L L I W C++V A + GLP +L+ VG Sbjct: 61 TALTDETVIKWAFNANFERICLSRFLGLPTGKYINPASWKCSMVWAATMGLPLSLEGVGS 120 Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRN-KPNHREAWRLFGEYCKGDVTVTRE 170 LKL QK+ EGK+LI F C RN + + W F +Y D+ Sbjct: 121 VLKLDKQKLTEGKDLIKYFSQPCAPTKSNGQRTRNHLYHAPDKWSAFKKYNIRDIETEMS 180 Query: 171 IFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I ++ P+ + ++LDQ INDRG +D+ L + R++L ++ LT Sbjct: 181 IQEKLTRFPVQDSIWDEYHLDQEINDRGVALDMTLVQEAIAMDGRSRSELTTAMKHLT-- 238 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + ++++K WL + G+ + L + +L + V + R + ++S+V Sbjct: 239 ELDNPNSVQQMKQWL-ADNGMETDTLGKKIVAELLKTAPLD---LADVLSLRQQLAKSSV 294 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---H 345 K + A+ +DGR RG QF GA+RTGRW+G + QNLP+ + + Sbjct: 295 RKYQAMENAVCTDGRARGMFQFFGANRTGRWAGRLIQMQNLPQNHLEDLAEARALVRFGD 354 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 D +S +R+ + G +L+V+D + IEARV+AWMAGE+W+ F G Sbjct: 355 FDALEMLYEDVPDTLSQLIRTAFVPKAGARLIVSDFSAIEARVIAWMAGEEWRQDVFAKG 414 Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462 D+Y + ++ F V + R GK+ ELALGY G A + M + GL + Sbjct: 415 GDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALDMGLEEDEL 474 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + AWRQ + + + W Sbjct: 475 PQ-----------------------------------------LVDAWRQANPCIVKFWW 493 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYL 580 ++ +A + + ++ + L + LPSGR L Y +G N+ Sbjct: 494 DVDKAAMEA------VRYKRTNSTHGITFSCQSGMLFITLPSGRRLAYVKPRIGENKFGG 547 Query: 581 N-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 T++ R +YG K ENIVQA +RDIL M IV+ VHDEIV Sbjct: 548 QCITYEGVGATKKWERLDSYGPKFVENIVQATARDILCNAMQTLQH--CSIVMHVHDEIV 605 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + + M PSWAKGL L+A+GYE+ Y+K Sbjct: 606 IEA--DPRMSLKAVCEQMGRTPSWAKGLLLRADGYETDFYKK 645 >gi|154504839|ref|ZP_02041577.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149] gi|153794722|gb|EDN77142.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149] Length = 644 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 205/697 (29%), Positives = 322/697 (46%), Gaps = 76/697 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S + L CG+ +YA E ++LFA+ +D P ++ D +P + Sbjct: 1 MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTQIIDLASGEKIPDEIM 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 E L + V A+N+ FER + F L + W CTLV A LP +L+ VGEAL L Sbjct: 61 EYLTDDSVIKTAYNAAFERNCINRFFGLSLKPEGWRCTLVQASMLSLPLSLEGVGEALNL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKR 174 +KM EGK+LI F CK RN P + E W LF YC DV V ++I + Sbjct: 121 DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCTRDVDVEKQIRNK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+ +EQ+L+ +DQ INDRG VD L + + + ++ ++ + + Sbjct: 181 LAKFPIPDREQKLYCMDQRINDRGIMVDQELIGHAVACDLLYKETVTKKAYEISG--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + +LK WL + G+ ++ L + + ++ ++ R+ S+++V K Sbjct: 239 PNSVSQLKDWLNEK-GIEVDSLAKAAVEELVE---NTQGDVAEMMKLRLAMSKTSVKKYE 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---S 349 + ++ DGR+ G LQF GA+RTGRW+G + NLP+ EL + + Sbjct: 295 AMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSLVKEGRYDLV 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S+ +R+ +A G + +V+D + IEARV+ ++AGE W ++ F +Y Sbjct: 355 ELLYDSTPDVLSELIRTAFVARPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKIY 414 Query: 410 VTTYARSFNVAPAQVTKDQRAIG--KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 T ++ F++ ++TK KV LA Y G A M + + Sbjct: 415 EQTASKMFHIPIGEITKGSPYRARGKVASLACQYGGAEGALISMGALNFVEEE------- 467 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + ++WR + + W E+ A Sbjct: 468 ----------------------------------ELKGLVQSWRTANPHIVNYWYEIDGA 493 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--------NNRSY 579 + ++ K V +V + L + LPSGR L Y + SY Sbjct: 494 VKAAVKERKMT------KVGMVTVYYQSGMLKITLPSGRVLSYVRPRMTVNRFGSESVSY 547 Query: 580 LN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 T R+ TR +YG K ENIVQA +RD+LAE M+ K G+DIV +HDE+V E P+ Sbjct: 548 EGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHDEVVLEVPE 607 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + +M P W +GLPLKA G+ES Y+K Sbjct: 608 GT-SSVEEVNGIMAVCPDWCEGLPLKAAGFESPFYKK 643 >gi|291556513|emb|CBL33630.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Eubacterium siraeum V10Sc8a] Length = 660 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 212/715 (29%), Positives = 314/715 (43%), Gaps = 96/715 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL KCG+ KY E D ++LF + D PV++ D +PQ + Sbjct: 1 MKTLSIDIETYSSVDLAKCGVYKYTEATDFDILLFGYSTDGGPVQVVDLACGETIPQEVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACF------------------NLDIPIHRWICTLVLA 100 AL N +VT A N+ FER L + W CT++ + Sbjct: 61 AALTNDNVTKWAFNAQFERICLSRWLRDHGGFDNACYSIPEDTVGNYLDPASWKCTMIWS 120 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPN-HREAWRL 156 GLP +L+ VG L L QK+ EGKELI FC+ RN P + W Sbjct: 121 AYMGLPLSLEGVGAVLGLGKQKLTEGKELIKYFCQPCAPTKANSGRTRNLPENAPDKWAS 180 Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 F Y DV V I ++L P+ E ++LDQ INDRG +D+ L + Sbjct: 181 FKRYNARDVEVEMSIQEKLAKFPVPDVVWEQYHLDQEINDRGVALDMDLVRQAIDMDTRS 240 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 R +L ++ LT + + ++++K WL GL+++ L + + V K + Sbjct: 241 RAELTAAMKKLTA--LDNPNSVQQMKQWLSD-NGLNVDSLGK---KEVAEMLKTAPAELQ 294 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 QV R + ++S+V K + +A+ +DGR RG QF GA+RTGRW+G + QNLP+ Sbjct: 295 QVLLLRQQLAKSSVKKYQAMEKAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLPQNHL 354 Query: 335 SHEELDQIIT---HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + + D +S +R+ + G K +V+D + IEARVLAW Sbjct: 355 PDLAEARALVRCGDFDGVELLYEDVPDTLSQLIRTAFVPRPGYKFIVSDFSAIEARVLAW 414 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQ 449 AGE W+ + FE G D+Y + ++ F V + R GK+ ELALGY G A + Sbjct: 415 FAGETWRQEVFEKGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGALK 474 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 M A+E + + A Sbjct: 475 AMG----------------------------------------ALEMGLSEGELQPLVTA 494 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 WR + + + W ++ +A ++ ++ + L + LPSGR L Sbjct: 495 WRNSNQNIVKFWWDIDRAAMNAVK------YHMDSEICGIKFSYKSGMLFITLPSGRRLS 548 Query: 570 Y--RDVGNNRSYLN-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 Y +G N+ T++ R TYG KL ENIVQA SRDIL M + Sbjct: 549 YVKPKLGTNQFGGECITYEGIGGTKKWERLDTYGPKLVENIVQATSRDILCYAMRTLSH- 607 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 I + +HDE+V E N + M P+WA GL L+A+GYE+ Y+K Sbjct: 608 -CFITMHIHDELVIEASLG--VNLKSICEQMGRTPTWANGLKLRADGYETMFYKK 659 >gi|167761124|ref|ZP_02433251.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704] gi|167661243|gb|EDS05373.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704] Length = 662 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 205/717 (28%), Positives = 310/717 (43%), Gaps = 98/717 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S I+L+KCG+ KYAE D ++LF + D V++ D +PQ L Sbjct: 1 MQTLSIDIETYSSINLSKCGVYKYAEAPDFEILLFGYSVDGCDVKVIDLAQGEHLPQELI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKAC---FNLDIPI-----------------HRWICTLV 98 +AL + + A N+ FER L + + W C++V Sbjct: 61 DALTDDSIIKWAFNANFERVCLSRYLRDLGISLDPFHDSHHLSQECSHFLNSESWRCSMV 120 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAW 154 A + GLP +L+ VG L L QK+ EGKELI F C RN+P H E W Sbjct: 121 WAATMGLPLSLEGVGSVLGLEKQKLTEGKELIKYFSVPCAPTKANGGRTRNRPFHDPEKW 180 Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 F Y DV I RL P+ +++DQ INDRG +D+ L ++ Sbjct: 181 DAFKRYNIRDVETEMGIKDRLSKFPVPEAVWYEYHIDQEINDRGVRIDMDLVTEAIEMDT 240 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 RT+L ++ +T + + ++++K WL GL + L + ++ + P+ Sbjct: 241 RSRTELTSAIKKMTD--LENPNSVQQMKQWLSN-NGLETDSLGKKVVAELIKT---APPE 294 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 V R + ++S+V K T+ A+ DGR RG F GA+RTGRW+G + QNLP+ Sbjct: 295 LQNVLELRQQLAKSSVRKYQTMERAVCDDGRARGMFAFYGANRTGRWAGRLIQLQNLPQN 354 Query: 333 SRSHEELDQIITH---LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 + + D +S +R+ I + V+D + IEARV+ Sbjct: 355 HLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKSDTQFYVSDFSAIEARVI 414 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKA 447 AW AGE W+ K F G D+Y + ++ F+V + R GK+ ELALGY G A Sbjct: 415 AWYAGETWRQKVFAEGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALGYGGSIGA 474 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + M + E + Sbjct: 475 LKAMGAI----------------------------------------EMGLSEDELPPLV 494 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 AWRQ + + + W ++ +A + +++ + L + LPSGR+ Sbjct: 495 DAWRQTNPNIVKFWWDVDRAVMEAVKHKHTTS------CYGLTFSCRSGMLFITLPSGRN 548 Query: 568 LVY--RDVGNNRSYLN-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 L Y +G N+ +T++ R +YG K ENIVQA SRDIL M Sbjct: 549 LAYVKPKIGTNKFGGECITYEGVGSTKKWERLDSYGPKFVENIVQATSRDILCYAMKTL- 607 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +IV+ +HDE+V E + +L M P WA+GL L+A+GY Y+K Sbjct: 608 -RNCEIVMHIHDELVIEA--DPCMSLDVLCEQMGRTPPWARGLKLRADGYTCPFYKK 661 >gi|308174986|ref|YP_003921691.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens DSM 7] gi|307607850|emb|CBI44221.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens DSM 7] Length = 648 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 230/699 (32%), Positives = 329/699 (47%), Gaps = 76/699 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL KCG+ Y E D ++LFA+ FD+ P+++ D +P + Sbjct: 1 MKTLSIDIETFSSVDLLKCGVYAYTEASDFEILLFAYAFDEEPIKVIDLAQGEALPHEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL ++ V A+N+ FERT + FN +P +W CT V A + GLP L V +ALKL Sbjct: 61 VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 S QK +EGK LI F CK RN P H + W F YC DV V R I R Sbjct: 121 SEQKDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKTYCGQDVEVERSIKNR 180 Query: 175 LEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + EQELW LDQ INDRG +D L + + L E + LT + Sbjct: 181 ISKFEPLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELTGLP--N 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + GL + L + + ++ + +V R ++++V K Sbjct: 239 PNSTAQLKKWLEDK-GLSVSSLAKDKIEELIEKTDDAS--VHRVLRLRQEMAKTSVKKYL 295 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTS 349 + +A+ D R+RG LQF GASRTGRW+G + QNLP+ + + + + H Sbjct: 296 AMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIADLDTARTLLKGGHYEAI 355 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S VR+ I SEG + V+D + IEARV+AW+AGE W+L F T +Y Sbjct: 356 ELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGKIY 415 Query: 410 VTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 + A+ F V +TK R GKV ELALGYQGG A +M + T GL+ + Sbjct: 416 EASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALTMGLDEDELP--- 472 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + KAWR + ++ + W ++ Sbjct: 473 --------------------------------------GLVKAWRTANKKIVQFWYDVEA 494 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR--------- 577 A + ++ K + + + + L + LPSGR L Y Sbjct: 495 AAVKAVKERKPV-----KIQHGLTFLCESGILFVQLPSGRRLAYAKPKLEIDDRFGKEAL 549 Query: 578 SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 +Y + + R TYGGKL ENIVQAV+RD LA ++ AGY V+ VHDE V + Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVHDETVLDV 609 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + + +M WAKGLPL A+G+ + Y+K Sbjct: 610 PRG-KNELDKVESIMGEPIPWAKGLPLTADGFITDYYKK 647 >gi|118852|sp|P06225|DPOL_BPSP2 RecName: Full=DNA polymerase gi|216151|gb|AAA32600.1| DNA polymerase (gene L; ttg start codon) [Bacillus phage SPO2] gi|579197|emb|CAA25691.1| unnamed protein product [Bacillus phage SPO2] Length = 648 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 229/698 (32%), Positives = 325/698 (46%), Gaps = 74/698 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL K G+ Y E D ++LFA+ FDD PV++ D +P + Sbjct: 1 MKTLSIDIETFSSVDLLKAGVYAYTEAPDFEILLFAYAFDDDPVKIIDLAQGDTLPHEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL ++ V A+N+ FERT + FNL + +W CT V A + GLP L V +ALKL Sbjct: 61 VALTSSKVIKTAYNANFERTCIAKHFNLMLLPAQWRCTAVHATTLGLPGNLDGVAKALKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 S+QK + GK LI F CK RN P H E W F YC DV V R I R Sbjct: 121 SAQKDKAGKALIRYFSVPCKPTKANGQRVRNLPEHDPEKWEKFKVYCIQDVEVERAIKNR 180 Query: 175 LEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + E +LW LDQ INDRG +DV L + + L E + LT + Sbjct: 181 ISKFEPLESEHKLWALDQEINDRGVRIDVDLVKHAIACDEQYQAGLIAEAKKLTGLP--N 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + GL + L + + ++ + +V R ++++V K Sbjct: 239 PNSTAQLKKWLEEK-GLTISSLAKDKIEELIEN--TNDETVHRVLRLRQEMAKTSVKKYL 295 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTS 349 + +A+ D R+RG LQF GASRTGRW+G + QNLP+ + + + H Sbjct: 296 AMEKALCPDNRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIEDLDTARNLLKGGHYEAI 355 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S VR+ I SEG + V+D + IEARV+AW+AGE+W+L+ F T +Y Sbjct: 356 ELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEEWRLEVFNTHGKIY 415 Query: 410 VTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + A+ F V +TK R GKV ELALGYQGG A +M Sbjct: 416 EASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMG--------------- 460 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A+ + KAWR + ++ + W ++ A Sbjct: 461 -------------------------ALNMGLAEGELPELVKAWRTANKKIVKFWYDVEAA 495 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---------GNNRS 578 + ++ K + + + + L + LPSGR L Y + Sbjct: 496 AIKAVKERKPVKLQ-----HGLTFLYESGILFVQLPSGRRLAYAKPKLELDERFGKEALT 550 Query: 579 YLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 Y + + R TYGGKL ENIVQA +RD LA +M AGY V+ VHDE V + P Sbjct: 551 YEGKLESGKWGRLNTYGGKLVENIVQATARDCLAITLMRLDNAGYKTVMHVHDEAVLDVP 610 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + +M SWAKGLPL A+G+ + Y+K Sbjct: 611 RG-KNELDKVEAIMGEPISWAKGLPLTADGFVTDYYKK 647 >gi|302876795|ref|YP_003845428.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|307687477|ref|ZP_07629923.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|302579652|gb|ADL53664.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] Length = 663 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 206/713 (28%), Positives = 317/713 (44%), Gaps = 96/713 (13%) Query: 3 TLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 TL ID ET S IDL KCG+ KY+E D V+LFA+ D V + D + +P + +A Sbjct: 6 TLSIDIETYSSIDLAKCGVYKYSESSDSEVLLFAYSVDGGSVIVIDVANGESIPDEILQA 65 Query: 61 LENTDVTIVAHNSYFERT----VLKACF--------------NLDIPIHRWICTLVLARS 102 L + V A N+ FER LK + + W C+++ + Sbjct: 66 LVDDSVIKWAFNAAFERVFLSIWLKRNYPELFCSYSIPEDSVGNYLDPSAWRCSMIWSAY 125 Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFG 158 GLP +L+ VG L L QK++EGK+LI FCK RN P H + W LF Sbjct: 126 MGLPLSLEGVGAVLGLEEQKLKEGKDLIRYFCKPCAATKVNGGRTRNLPEHAPDKWELFK 185 Query: 159 EYCKGDVTVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 Y K DV V I K+ P+ E ++LDQ INDRG +D+ + +I + + Sbjct: 186 AYNKRDVEVEMNIQKKLSHYPVPEFVWEEYHLDQEINDRGIALDMDVVENAIRIDAISKA 245 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276 L ++ LT + + + ++K WL + G+ + L + + V+ K + V Sbjct: 246 TLMATMQDLTD--LENPNSVAQMKGWLAAK-GVDTDSLDK---KAVIELLKTVPTDVADV 299 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R + ++S+V K + A+ DGR RG QF GA+R+GRW+G + QNLP+ Sbjct: 300 LTLRQQLAKSSVKKYQAMQNAVCDDGRARGMFQFYGANRSGRWAGRIIQLQNLPQNHMED 359 Query: 337 EELDQIITHLPTSI---TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 ++ + I + ++S+ +R+ I EG K VAD + IEARV+A +A Sbjct: 360 LDVARDIVKSGDYEILNMFYDNVPGVLSELIRTAFIPREGYKFAVADFSAIEARVIAHLA 419 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKM 451 E+W++K F D+Y + + F V + R GK+ ELALGY G A M Sbjct: 420 KERWRMKVFADNGDIYCASASAMFGVPVEKHGQNAHLRQKGKIAELALGYGGSVGALTSM 479 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A++ + + AWR Sbjct: 480 G----------------------------------------ALDMGLAEEELQPLVDAWR 499 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY- 570 + + + W ++ A ++ I+ A R L ++LPSGR L Y Sbjct: 500 AANPNIVQFWWDVDNAVKRAIKERTATKTHGIR------FIYKSAMLFIVLPSGRRLAYV 553 Query: 571 -RDVGNNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 +G N+ + T ++ R +YG K ENIVQA+SRDIL + + Sbjct: 554 KPRIGENKFGGESVTYEGVGTNKKWERIESYGPKFVENIVQAISRDILCYALRTLSH--C 611 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV VHDE++ E + + M P W +GL L+A+GYE++ Y+K Sbjct: 612 FIVGHVHDEVIIECRQDA--SLEAICEQMGRVPEWIEGLLLRADGYETQFYKK 662 >gi|332800352|ref|YP_004461851.1| DNA-directed DNA polymerase [Tepidanaerobacter sp. Re1] gi|332698087|gb|AEE92544.1| DNA-directed DNA polymerase [Tepidanaerobacter sp. Re1] Length = 652 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 223/702 (31%), Positives = 331/702 (47%), Gaps = 78/702 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +DLTKCG+ Y AED ++LF + F++ PVE+ D +P + Sbjct: 1 MTILSIDIETYSSVDLTKCGVYAYTQAEDFEILLFGYAFNNDPVEVIDLASGEQIPDEVT 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 A+ ++ V A N+ FERT L N +P W C+ A + GLP L V + L L Sbjct: 61 NAITDSAVIKTAFNANFERTCLAKYLNKPMPPEEWRCSQAHALTLGLPLNLAGVAKCLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 + QKM EGK LI F CK RN P+H E W F YCK DV V R I KR Sbjct: 121 ADQKMSEGKALIRYFSIPCKPTKANGGRTRNLPHHDREKWETFKAYCKQDVVVERSIRKR 180 Query: 175 L--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P++ KE +LW LDQ IND G VD L + + +L E LT + + Sbjct: 181 LENYPMTDKELKLWSLDQKINDYGVRVDRQLVENAICCDGIHQKELMAEAIDLTG--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LKTWL + ++ L++ + +L+ P +V R S+++V K Sbjct: 239 PNSPAQLKTWLKGNHNIQVDSLSKANVEELLNKI--NHPTVTRVLELRQDMSKTSVRKYE 296 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTS 349 + AM DGR+RG LQ+ GA+RTGRW+G + QNLPR + +L + + + Sbjct: 297 AMDRAMGGDGRIRGLLQYYGANRTGRWAGRLVQVQNLPRNNMKDLDLARKLLLAGDYESL 356 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S +R+ + S G + +++D + IEARV+AW+AGE+W + F+ +Y Sbjct: 357 ELLFDSVPDVLSQLIRTAFVPSPGHRFIISDFSAIEARVIAWLAGEKWVVDTFKGHGKIY 416 Query: 410 VTTYARSFNVAPA-----QVTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463 T ++ F V + R GKV LA GYQG A + M + GL + Sbjct: 417 EMTASKMFGVPMELIVKGNPEYELRQKGKVAVLACGYQGSVGALKAMGALNMGLKEDELP 476 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + AWR+ + + +LW + Sbjct: 477 A-----------------------------------------IVAAWRESNPNIVKLWWD 495 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + A + +++ +I + + L + LPSGR+L Y Sbjct: 496 VEDAAIRAVKDRTSITMQYG-----LKFYYKSGVLFIRLPSGRNLAYVKPRIELDTRFNK 550 Query: 584 TR----------QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + + R TYGGKLTENI+QA++RD LAE ++ KAGY I VHDE+V Sbjct: 551 DKLTYEGIMLGNKWARIDTYGGKLTENIIQAIARDCLAESLLRLDKAGYKIAFHVHDEVV 610 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + P + + +M+ + +WAKGLPL+AEG+E+ Y K Sbjct: 611 LDVPQGF-GSLKEVEEIMSQDINWAKGLPLRAEGFETNYYMK 651 >gi|328913309|gb|AEB64905.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens LL3] Length = 648 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 231/699 (33%), Positives = 330/699 (47%), Gaps = 76/699 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL KCG+ Y E D ++LFA+ FD+ P+++ D +P + Sbjct: 1 MKTLSIDIETFSSVDLLKCGVYAYTEAPDFEILLFAYAFDEEPIKVIDLAQGEALPHEVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL ++ V A+N+ FERT + FN +P +W CT V A + GLP L V +ALKL Sbjct: 61 VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 S QK +EGK LI F CK RN P H + W F YC DV V R I R Sbjct: 121 SEQKDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKAYCGQDVEVERSIKNR 180 Query: 175 LEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + EQELW LDQ INDRG +D L + + L E + LT + Sbjct: 181 ISKFELLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELTGLP--N 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LKTWL + GL + L + + ++ + +V R ++++V K Sbjct: 239 PNSTAQLKTWLEDK-GLSVSSLAKDKIEELIEKTDDAS--VHRVLRLRQEMAKTSVKKYL 295 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTS 349 + +A+ D R+RG LQF GASRTGRW+G + QNLP+ + + + + H Sbjct: 296 AMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIADLDTARTLLKGGHYEAI 355 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S VR+ I SEG + V+D + IEARV+AW+AGE W+L F T +Y Sbjct: 356 ELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGKIY 415 Query: 410 VTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 + A+ F V +TK R GKV ELALGYQGG A +M + T GL+ + Sbjct: 416 EASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALTMGLDEDELP--- 472 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + KAWR + ++ + W ++ Sbjct: 473 --------------------------------------GLVKAWRTANKKIVQFWYDVEA 494 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR--------- 577 A + ++ K + + + + L + LPSGR L Y Sbjct: 495 AAVKAVKERKPV-----KIQHGLTFLCESGILFVQLPSGRRLAYAKPKLEIDDRFGKEAL 549 Query: 578 SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 +Y + + R TYGGKL ENIVQAV+RD LA ++ AGY V+ VHDE V + Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVHDEAVLDV 609 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + + +M WAKGLPL A+G+ + Y+K Sbjct: 610 PRG-KNELDKVEAIMGEPIPWAKGLPLTADGFITDYYKK 647 >gi|302873662|ref|YP_003842295.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|307686614|ref|ZP_07629060.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|302576519|gb|ADL50531.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] Length = 645 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 215/697 (30%), Positives = 337/697 (48%), Gaps = 75/697 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL K G+ Y + ++LFA+ FD V++ D +P + Sbjct: 1 MQTLSIDIETFSDVDLIKSGVYAYTASPNFEILLFAYAFDSDEVKIIDFASGEELPAEII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL N ++ A N+ FER L N + + W CT V A + G P +L V + L L Sbjct: 61 EALLNENIIKSAFNAQFERICLSRHLNKKLTANAWQCTAVQAATLGFPLSLDGVAQVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 + QKM+EGKELI F CK RN P H E W F +YC DV V R I K+ Sbjct: 121 TEQKMKEGKELIRYFSIPCKPTRVNEGRTRNLPQHSSEKWNDFKKYCIRDVEVERAIRKK 180 Query: 175 --LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 P+S EQ + LD INDRG VD+ L + + + E + LT + + Sbjct: 181 LSRYPISENEQRNYILDHEINDRGVFVDLDLVARAMECDRLHKEDTFTEAQRLTG--LDN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + +LK WL +E G+ ++ L++ + K+ + ++ N R++ +++++ K Sbjct: 239 PNSVAQLKQWL-IENGVEVDSLSKKAVSDL---AKEADGEVERLLNLRLQLAKTSIKKYE 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---S 349 + A+ D R+RG LQF GA+RTGRW+G + QNLP+ L + + Sbjct: 295 AIERAVCPDKRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLKDLTLARNLVKSGDFDTL 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S+ +R+ I + +VAD + IEARV+AW+AGE+W++ F T +Y Sbjct: 355 ALLFESVPHVLSELIRTAFIPKSNHRFIVADFSAIEARVIAWLAGEKWRMDVFATHGKIY 414 Query: 410 VTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + ++ F V ++TK R GK+ ELALGY G A M Sbjct: 415 EASASQMFKVPIEEITKTSALRQKGKISELALGYGGSVGALTAMG--------------- 459 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A++ + + AWRQ + +++LW ++ +A Sbjct: 460 -------------------------ALDMGVAEDELQGLVTAWRQANPNITKLWWDIDKA 494 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN--------RSY 579 + ++ ++ K + ++ + + + LPSGR L Y +Y Sbjct: 495 AIKAVKKKTTVMVGK------IKLQYESGIMFITLPSGRRLSYIKPRIEPNKFERDAVTY 548 Query: 580 LN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 T++ R TYG KL ENIVQA++RD+LAE M+ + GY+IV+ +HDEIV E P Sbjct: 549 EGIGATKKWERIETYGPKLVENIVQAIARDLLAEAMLRVAENGYEIVMHIHDEIVIEAPL 608 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + +M P+WA+ LPL+A+G+E + YRK Sbjct: 609 NF-GSLKDVCEVMAIAPTWAESLPLRADGFECEYYRK 644 >gi|300909419|ref|ZP_07126880.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] gi|300893284|gb|EFK86643.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] Length = 644 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 204/697 (29%), Positives = 309/697 (44%), Gaps = 76/697 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +L + G +YA+ D ++LF + D PV++ D +P + Sbjct: 1 MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL++ + A N+ FER L + W C+ V + + GLP +L+ VG L L Sbjct: 61 QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK+ GKEL+ F CK RN P H + W+ F +Y + DV V EI ++ Sbjct: 121 PRQKITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 P+ E E +++DQ INDRG +D L + + + Q + LT + Sbjct: 181 FSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQLTGLA--N 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + G+ + L + + ++L + T QV R S+S+V K Sbjct: 239 PNSPLQLKNWLHQQ-GVETDSLAKASVAQLLQT---TTGTVHQVLALRQLLSKSSVKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP---TS 349 + +AM DG + G LQF GA+RTGRW+G + QNLPR S E + + Sbjct: 295 AMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTAL 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S +R+ I S+G VAD + +EARV+AW++GE+W+ AF ED+Y Sbjct: 355 AMLYESVPDVLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNEDIY 414 Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + ++ F V + + R GK+ ELALGY G A + M +T Sbjct: 415 CASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATK------------ 462 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + WR + + W ++ +A Sbjct: 463 ----------------------------LGLTDDELPPLVQMWRNASPHIVQFWWDVDKA 494 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR-------S 578 ++ I+ + + L L SGR L Y +G NR Sbjct: 495 AKECIKTHLPQTTHGMK------FIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESITF 548 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 N T ++ R TYG KL ENIVQA SRD+LA M AG +V+ +HDE V + P Sbjct: 549 MGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAPT 608 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + +MT P WA GL L A G+ Y+K Sbjct: 609 D--RSLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643 >gi|227496457|ref|ZP_03926741.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] gi|226834039|gb|EEH66422.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] Length = 651 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 230/695 (33%), Positives = 323/695 (46%), Gaps = 73/695 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S L G+ +YA D ++LFA+ D V++ D +P + Sbjct: 9 MRTLSIDIETFSKASLPSVGVYRYAADESFEILLFAYAVDGGEVQIVDLARGEQIPGDVL 68 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +ALE+ V A N+ FER L A + W C++V A G+P L V +AL L Sbjct: 69 DALEDPGVVKSAFNAAFERVCLSAHLGHRLDPEGWRCSMVWASFAGVPLDLAGVAKALHL 128 Query: 119 SSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREI--F 172 ++KM EGK LI F K +RN P H + W F YCK DV V I Sbjct: 129 ETEKMGEGKNLIRYFSLPAKPTKANGGRERNLPEHAPDDWETFKAYCKRDVEVELAITKR 188 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 P+ ++E + ++ DQ INDRG +D LA + R + + LT V + Sbjct: 189 LHAMPMPAREWDNYWDDQRINDRGVRIDADLATAAVDADNTGRASALERMRELT--RVDN 246 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + +L WL + GL ++ L + L + +V R ++S+V K Sbjct: 247 PASVTQLLAWLRSQ-GLQIDSLAKADVAAALEGALE--GDVAEVLALRQEMAKSSVKKYE 303 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLPTS 349 ++ DGR G LQF+GA RTGRW+G + QNLPR S S E + H Sbjct: 304 RMLACRCPDGRAHGLLQFMGAGRTGRWAGRLVQVQNLPRQSISDLEAAADLVRTGHADML 363 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 T Q++S+ +R+ +A G + +VAD + IEAR +AW+AGEQW L FE G D+Y Sbjct: 364 ETLWGSAPQVLSELIRAAFVAEPGSRFLVADYSAIEARTIAWLAGEQWVLDLFEAGGDIY 423 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T R F + + R KV LA GYQGG A + M Sbjct: 424 CETGTRMFRQVVEKHSP-LRQRAKVAVLACGYQGGVGALKTMG----------------- 465 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + AWR + ++++LW +++ A Sbjct: 466 -----------------------GEKLGLSEDEMADIVAAWRAANPKIAQLWWDINAAAI 502 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT--- 584 I++G A + R DK LI+ LPSGR LVY +G NR + T Sbjct: 503 AVIKDGGARAVGRIRLAH------DKGALIITLPSGRPLVYPSPRIGENRFGGESITHMG 556 Query: 585 ----RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 R+ R TYGGKLTENIVQA +RDILA + ++GY +V+ +HDE+V E P+ Sbjct: 557 VGVNRKWGRIETYGGKLTENIVQATARDILAHAIARLERSGYPVVMHIHDEVVTEVPEG- 615 Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + L LM+ P WA GLPL AEG+ES YRK Sbjct: 616 RGSVEELCALMSQAPPWADGLPLAAEGFESTYYRK 650 >gi|220930221|ref|YP_002507130.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] gi|220000549|gb|ACL77150.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] Length = 647 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 205/699 (29%), Positives = 316/699 (45%), Gaps = 80/699 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + +L +D ET S ++L K G+ +YAE D ++LF + D V++ D +P + Sbjct: 4 INSLSLDLETYSSVNLQKSGVYRYAESDDFEILLFGYSVDSGEVQVVDLAGGEEIPDEII 63 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 AL + VT A N+ FER L NL + W C++V + GLP +L+ VG L Sbjct: 64 NALMDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMVWSAYMGLPLSLEGVGAVL 123 Query: 117 KLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 L QK+ EGK+LI FC RN P H + W F Y DV I Sbjct: 124 GLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKVYNIRDVESEMLIQ 183 Query: 173 KRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +RL + ++LDQ INDRG +D+ ++ + R KL ++ +T + Sbjct: 184 QRLSKFQVPENIWKEYHLDQVINDRGIAIDMTFVKQAVEMDEHSREKLIALMQDITN--L 241 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++++K WL + GL + L + +L + + R + ++S+V K Sbjct: 242 ENPNSVQQMKDWL-ADNGLETDSLGKKVVAEMLKTAPEPLGTV---LELRQQLAKSSVKK 297 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLP 347 + A+ SDGR RG QF GA+RTGR+SG + QNLP+ E + + + Sbjct: 298 YTAMENAVCSDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNFD 357 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +++S+ +R+ I EG K +VAD + IEARV+AW+AGE+W+L F+ G D Sbjct: 358 ALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRLNVFQKGGD 417 Query: 408 LYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 +Y + ++ FNV + R GK+ ELALGY G A + M Sbjct: 418 IYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGAVGALKSMG------------- 464 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 A+E + + AWRQ + +++LW ++ Sbjct: 465 ---------------------------ALEMGIEEEELQPLVTAWRQSNPNITKLWWDVD 497 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--------NNR 577 +A + ++ + L ++LPSGR L Y + Sbjct: 498 RAVKTCVKQKTPTATHG------IKFIYQSGMLFIVLPSGRRLAYVKPRMGENMFGSESV 551 Query: 578 SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 +Y T++ R +YG K ENIVQA+SRDIL M IV VHDEI+ E Sbjct: 552 TYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTL--KNCSIVAHVHDEIIIEA 609 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + S + M P+WA GL L A+GYE + Y+K Sbjct: 610 --DMGMSLSAICEQMAKTPTWANGLLLSADGYECQFYQK 646 >gi|227498331|ref|ZP_03928481.1| DNA polymerase I [Acidaminococcus sp. D21] gi|226903793|gb|EEH89711.1| DNA polymerase I [Acidaminococcus sp. D21] Length = 662 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 201/717 (28%), Positives = 304/717 (42%), Gaps = 98/717 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M T+ ID ET S ++L KCG+ KYAE ++LF + D V++ D +P + Sbjct: 1 MKTISIDIETFSDVNLAKCGVYKYAESPAFEILLFGYAIDGGKVQVVDLARGERIPDDIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFN--------------------LDIPIHRWICTLV 98 +AL + VT A N+ FER L + W C+++ Sbjct: 61 DALTDESVTKWAFNASFERVCLSRYLRDLRISLDPFHDHHPLSRDCARFLNPAGWKCSMI 120 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAW 154 + GLP +L+ G LKL SQKM+EGK+LI F CK RN P H + W Sbjct: 121 WSAYMGLPLSLEGAGAVLKLDSQKMKEGKDLIRYFCVPCKETKLNGGRTRNLPRHAPDKW 180 Query: 155 RLFGEYCKGDVTVTREIFK--RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 LF Y K DV V I + + P+ + ++LDQ INDRG +D LA I Sbjct: 181 TLFKSYNKRDVEVEMVIQERLKKYPVPEPIWDEYHLDQEINDRGIAIDRTLAENAIVIDA 240 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 R L L+ T + + + ++ WL + G+ + L + Q +L + ++ Sbjct: 241 RSRDSLMAVLKGKTG--LENPNSVIQMIGWL-EQHGMKTDSLGKKQVQELLKTAEEP--- 294 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 V R + ++S+V K + D R RG QF GA+RTGR++G QNLP+ Sbjct: 295 LRSVLLLRQKLAKSSVKKYQAMEMTACEDSRARGMFQFYGANRTGRFAGRHIQLQNLPQN 354 Query: 333 SRSHEELDQIIT---HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 + + + ++S +R+ + +G K VV+D + IEARVL Sbjct: 355 HLPDLAEARELVRQGNYEALELLYDSIPDVLSQLIRTAFVPRKGMKFVVSDFSAIEARVL 414 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKA 447 +W+AGE W+L F D+Y + + F V + R GK+ ELALGY G A Sbjct: 415 SWLAGETWRLDVFARNGDIYCASASSMFGVPVEKHGVNGHLRQKGKIAELALGYGGSTGA 474 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + M A++ + Sbjct: 475 LKAMG----------------------------------------ALDMGLTENELYPLV 494 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 ++WR + + + W ++ + I+ + A R L + LPSGR Sbjct: 495 QSWRSANPHIVDFWWQVDATVKTAIKEQIPMRAGCIR------FLCQSGMLFIQLPSGRR 548 Query: 568 LVY--RDVGNNRSYLNT-------TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 L Y +G NR + T++ R +YG K ENIVQ +SRDIL M Sbjct: 549 LSYVKPRIGENRFGGESVTYEGIGATKKWERLESYGPKFVENIVQGISRDILCYAMQTL- 607 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV VHDE++ E + + M P WA+GL L+A+GYE + Y+K Sbjct: 608 -RCCAIVGHVHDELIIECSRDA--SVDAICEQMGRTPPWAEGLLLRADGYECEFYQK 661 >gi|313618507|gb|EFR90506.1| DNA polymerase [Listeria innocua FSL S4-378] Length = 684 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 206/701 (29%), Positives = 321/701 (45%), Gaps = 82/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +L K G+ +Y A+D VILF + D V++ D + +P+ + Sbjct: 39 MKNLEIDIETYSSTNLQKSGVYRYVEADDFEVILFGYAVDGDEVKVIDLMDGEKIPKEIL 98 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 +AL + +T A N+ FER L + W C++V + GL +L+ VG Sbjct: 99 DALTDETITKWAFNAQFERVCLSRYLGYPTGTYLNPSSWKCSMVWSAYMGLALSLEGVGA 158 Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTRE 170 L L QK+ EGK+LI F C RN W+ F Y K DV + Sbjct: 159 VLGLEKQKLTEGKDLIRYFCLPCTPTKINGGRTRNLSTDEIDKWQQFKAYNKRDVEAEIQ 218 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I +RL P+ + ++LDQ INDRG VD+ + D+ KL ++ +T Sbjct: 219 IQQRLIKFPVPEDIWDEYHLDQEINDRGIKVDMDFVKQAIAMDDISHEKLLTVMQQITN- 277 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + ++++K+WL GL +E L + K+ + +V + R + ++S+V Sbjct: 278 -LDNPNSVQQMKSWLCE-NGLEMETLGKKAVA---EKLKETDGELNEVLSLRQQLAKSSV 332 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---H 345 K + A+ SD R RG QF GA+RTGR++G + QNLP+ + + I Sbjct: 333 KKYTAMENAVCSDSRARGMFQFYGANRTGRFAGRLVQLQNLPQNHMPDLKEARNIVRNGD 392 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 + T D +S +R+ + G K +VAD + IEARVL+W+AGE W+ K F +G Sbjct: 393 VETLEMLYEDIPDTLSQLIRTAFVPRVGHKFIVADFSAIEARVLSWLAGETWRTKVFASG 452 Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+Y + ++ F V + R GK+ ELALGY G A + M Sbjct: 453 GDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMG----------- 501 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 A+E + + AWR + +++ W + Sbjct: 502 -----------------------------ALEMGLEEEELKPLVNAWRMSNPNITQFWWD 532 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581 + +A +Q ++ K+ + + L ++LPSGR L Y +G N+ Sbjct: 533 VDRAAKQCVKENKSQ------ETHSIEFHCFSGMLFIVLPSGRRLAYVKPRIGENQFGGE 586 Query: 582 TT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + T++ R +YG K ENIVQA+SRDIL M + Y IV VHDE++ Sbjct: 587 SVTYEGVGGTKKWERLESYGPKFVENIVQAISRDILMHAMKSLRH--YRIVAHVHDEVII 644 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ET + + + + M+ P WAKGL L A+GYE Y+K Sbjct: 645 ET--NPQISVTEVCKQMSQVPPWAKGLLLDADGYECDFYQK 683 >gi|218133416|ref|ZP_03462220.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC 43243] gi|217990791|gb|EEC56797.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC 43243] Length = 644 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 206/697 (29%), Positives = 317/697 (45%), Gaps = 76/697 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S + L CG+ +YA E ++LFA+ +D P + D MP + Sbjct: 1 MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTRIIDLASGQTMPDEIM 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 E L + V A N+ FER + F L + W CT V A LP +L+ VGEAL L Sbjct: 61 ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKR 174 +KM EGK+LI F CK RN P + E W LF YC DV V ++I + Sbjct: 121 DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVDVEKQIRNK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+ +EQEL+ +DQ INDRG VD L + + + ++ + + Sbjct: 181 LAKFPIPDREQELYCMDQRINDRGIMVDRELISHAVTCDLLYKEAASKRAYEISG--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + +LK WL + G+ ++ L + + ++ + ++ R+ S+++V K Sbjct: 239 PNSVSQLKEWLNEK-GIEVDSLAKAAVEELVEK---TEGEISEMMKLRLSMSKTSVKKYE 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---S 349 + ++ DGR+ G LQF GA+RTGRW+G + NLP+ EL + I Sbjct: 295 AMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSIVKEGRYDLV 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S+ +R+ +A G + +V+D + IEARV+ ++AGE W ++ F +Y Sbjct: 355 ELLYDSTPDVLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKIY 414 Query: 410 VTTYARSFNVAPAQVTKDQRAIG--KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 T ++ F++ ++TK KV LA Y G A M + + Sbjct: 415 EQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGALNFVEEE------- 467 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + ++WR + + W E+ A Sbjct: 468 ----------------------------------ELKGLVQSWRTANPHIVNYWYEIDGA 493 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--------NNRSY 579 + ++ K + V + L + LPSGR L Y + SY Sbjct: 494 VKAAVKERKMTTVGR------VTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSESVSY 547 Query: 580 LN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 T R+ TR +YG K ENIVQA +RD+LAE M+ K G+DIV +HDE+V E P+ Sbjct: 548 EGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLCLEKKGFDIVCHIHDEVVLEVPE 607 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + +M P W +GLPLKA G+ES Y+K Sbjct: 608 GT-SSVEEVNGIMAVCPDWCEGLPLKAAGFESPFYKK 643 >gi|317132759|ref|YP_004092073.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3] gi|315470738|gb|ADU27342.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3] Length = 662 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 208/717 (29%), Positives = 322/717 (44%), Gaps = 98/717 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M T+ ID ET S +DL KCG+ +Y ++LF + D PV++ D +P+ + Sbjct: 1 MKTISIDIETFSDVDLGKCGVYRYCSSPAFEILLFGYSVDGGPVKVVDLACGEKIPEDIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACF-----NLD---------------IPIHRWICTLV 98 +AL + V A N+ FER L LD + W C++V Sbjct: 61 DALTDDTVLKWAFNANFERVCLSRYLRDMGRGLDPFHDNHPLSLEHARFLNPEGWRCSMV 120 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAW 154 A + GLP +LK VG L+L+ QKM+EGK LI F C RN P + W Sbjct: 121 WAATMGLPLSLKGVGAVLQLADQKMDEGKALIKYFSVPCAPTKANGGRTRNLPSDDPGKW 180 Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 F +Y + DV V I ++L P+ + +++DQ INDRG +D+ L + Sbjct: 181 ATFKKYNQRDVEVEMMIQRKLRSFPVPDFVWDEYHIDQEINDRGVRIDMDLVEKAIDMDT 240 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 R++L ++++++T + + ++++K WL G+ ++ L + + V + K P+ Sbjct: 241 RSRSELTEKMQAITN--LENPNSVQQMKQWLSD-NGMEVDSLGK---KAVTALLKTAPPE 294 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 +V R + ++S+V K T+ A+ SD R RG F GA+RTGRW+G + QNLP+ Sbjct: 295 LTEVLELRQQLAKSSVKKYQTMQRAVCSDSRARGMFMFYGANRTGRWAGRLIQLQNLPQN 354 Query: 333 SRSHEELDQIITHL---PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 + + + D +S +R+ I +G + VAD + IEARV+ Sbjct: 355 HLPDLDAARALVKSGDYEAVKMIYEDVPDTLSQLIRTAFIPKDGCRFYVADFSAIEARVI 414 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKA 447 AW AGE+WK AF GED+Y +T R F+ + + RA GK+ ELA GY G A Sbjct: 415 AWYAGEKWKSDAFANGEDIYCSTARRMFHKPVVKHGVNGELRAKGKIAELACGYGGSTGA 474 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + M A+E + Sbjct: 475 LKAMG----------------------------------------ALEMGLSEDELPDIV 494 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 +WR + ++ + W ++ +A ++N K + + L + LPSGR+ Sbjct: 495 SSWRDANQQIVKFWWDVDKAVMAAVKNHKTTRLGR------LAFFWQAGMLFITLPSGRN 548 Query: 568 LVY--RDVGNNRSYLN-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 L Y VG NR T++ R +YG K ENIVQA SRDIL M Sbjct: 549 LAYVKPKVGMNRFGGECITYEGVGGTKKWERLESYGPKFVENIVQATSRDILCNSMKMLR 608 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 D+ + +HDE+V E + L M P+WA GL L+A+GY Y+K Sbjct: 609 H--CDVCMHIHDELVIEA--DPRVSLDTLCEQMGRVPAWADGLVLRADGYVCDFYKK 661 >gi|256847832|ref|ZP_05553277.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] gi|256715521|gb|EEU30497.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] Length = 644 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 203/697 (29%), Positives = 316/697 (45%), Gaps = 76/697 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +L + G+ +YA+ D ++LF + D PV++ D +P + Sbjct: 1 MKQLSIDIETYSNTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL++ + A N+ FER L + + W C+ V + + GLP +L+ VG L L Sbjct: 61 KALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK+ GKEL+ F CK RN P H + W+ F +Y + DV V EI ++ Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180 Query: 175 --LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 P+ E E +++DQ INDRG +D L + + +V + Q + LT + Sbjct: 181 LECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKKLTGLA--N 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + G+ + L++ + ++L + T QV R S+S++ K Sbjct: 239 PNSPLQLKDWLHQQ-GIKTDSLSKASVAQLLQT---TTGTVHQVLALRQLLSKSSIKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LPTS 349 + +AM DGR+ G LQF GA+RTGRW+G + QNLPR S E + + +P Sbjct: 295 AMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPAL 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S +R+ I S+ VAD + +EARV+AW++ E+W+ ++F ED+Y Sbjct: 355 AMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDIY 414 Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + ++ F V + + R GK+ ELALGY G A + M +T Sbjct: 415 CASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGAT------------- 461 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + WR + + W ++ +A Sbjct: 462 ---------------------------NLGLTDDELPPLVQMWRNASPHIVQFWWDVDKA 494 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR-------S 578 ++ I+ + + L L SGR L Y +G NR Sbjct: 495 AKECIKTHLPQTTHGMK------FIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESITF 548 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 N T ++ R TYG KL ENIVQA SRD+LA M AG +V+ +HDE V + P Sbjct: 549 MGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAPT 608 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + +MT P WA GL L A G+ Y+K Sbjct: 609 D--RSLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643 >gi|317501098|ref|ZP_07959304.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium 8_1_57FAA] gi|316897485|gb|EFV19550.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium 8_1_57FAA] Length = 662 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 202/717 (28%), Positives = 312/717 (43%), Gaps = 98/717 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S ++L+KCG+ KYAE D ++LF + D V + D +PQ + Sbjct: 1 MQTLSIDIETYSDVNLSKCGVYKYAESPDFEILLFGYSADGSEVTVIDLAQGEHLPQKII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFN--------------------LDIPIHRWICTLV 98 +AL + V A N+ FER L + W C++V Sbjct: 61 DALTDDTVIKWAFNANFERVCLSRYLRDLGVSLDPFHDNHPLSTECARFLNPESWRCSMV 120 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAW 154 A + GLP +L+ VG L L QK+ EGK+LI F C RN P H + W Sbjct: 121 WAATMGLPLSLEGVGAVLGLEKQKLTEGKDLIKYFSVPCAPTKANGGRTRNHPFHAPDKW 180 Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 F +Y DV I RL P+ + +++DQ INDRG +D+ L ++ Sbjct: 181 EAFKKYNIRDVETEIGIKDRLAKFPVPEAVWDEYHIDQEINDRGVRLDMDLVKEAIEMDT 240 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 R++L ++ +T + + ++++K WL GL + L + ++ + P+ Sbjct: 241 RSRSELTAAMKDMTA--LDNPNSVQQMKQWLSD-NGLETDSLGKKVVAELIKT---APPE 294 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 V R + ++S+V K T+ A+ DGR RG F G +RTGRW+G + QNLP+ Sbjct: 295 LQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFAFYGVNRTGRWAGRLIQLQNLPQN 354 Query: 333 SRSHEELDQIITH---LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 + + D +S +R+ I +G + V+D + IEARV+ Sbjct: 355 HLPDLADARALVKSGNFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQFYVSDFSAIEARVI 414 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKA 447 AW AGE W+ K FETG D+Y + ++ F+V + R GK+ ELALGY G A Sbjct: 415 AWYAGETWRQKVFETGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALGYGGSVGA 474 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + M + E + Sbjct: 475 LKAMGAI----------------------------------------EMGLSEDELPPLV 494 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 AWRQ + + + W ++ ++ + ++ + + L + LPSGR+ Sbjct: 495 DAWRQTNPNIVKFWWDVDRSVMEAVKYKHTTSSYG------LTFSCRSGMLFITLPSGRN 548 Query: 568 LVY--RDVGNNRSYLN-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 L Y +G N+ +T++ + +YG K ENIVQA SRDIL M Sbjct: 549 LAYVKPKIGTNKFGGECVTYEGIGSTKKWEQLDSYGPKFVENIVQATSRDILCYAMKTL- 607 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV+ +HDE+V E + +L M P WAKGL L+A+GY + Y+K Sbjct: 608 -RCCSIVMHIHDELVIEA--DPHMSLDVLCEQMGRTPPWAKGLKLRADGYVTPFYKK 661 >gi|315654969|ref|ZP_07907874.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 51333] gi|315490930|gb|EFU80550.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 51333] Length = 640 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 218/693 (31%), Positives = 317/693 (45%), Gaps = 72/693 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET SP+ L K G+ KY D ++LF++ D V D +P + Sbjct: 1 MRTLSIDIETYSPVILAKAGVYKYCNHPDFKILLFSYAIDSCTVRTVDLASGEQLPDAVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL ++ VT A+N+ FERT L A + W C++V A + GLP +LK VG+ L L Sbjct: 61 DALADSAVTKWAYNASFERTCLSAYLGRLLDPAGWRCSMVWAATLGLPLSLKDVGKVLNL 120 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-- 176 +QKM+EGK+LI FC + + R + W+LF Y DV V I ++L Sbjct: 121 DAQKMDEGKDLIKHFCVPDDNS--QRRLPSSDPAGWKLFKMYNARDVEVETAIRQKLADF 178 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 P+ E + +DQ INDRG +D LA I + R + LT + + Sbjct: 179 PVPDYLWEQYEVDQRINDRGIRIDTTLAANAIAIDEEHRAQALARAHKLTG--LDNPASP 236 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 +L+ WL G +E + + + L T Q + R SRS+V K +++ Sbjct: 237 LQLQEWLNQH-GCPIESMAKESVDDAL---ANATGQVREALELRQELSRSSVAKYRKMID 292 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSD 353 +D R G LQF GA+RTGRW+G + QNLPR + + Sbjct: 293 VTCTDQRAHGLLQFYGANRTGRWAGRLVQVQNLPRNYLPDLTQARGLVRDGNGETLEMLY 352 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +S +R+ I S + +VAD + IEARVLAW+AGE+ L AF+ GEDLY T Sbjct: 353 SSVPDTLSQLIRTAFIPSGAHRFIVADYSAIEARVLAWLAGEETTLAAFKNGEDLYCATA 412 Query: 414 ARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 + F V + + R GK+ LA GY G A + M + Sbjct: 413 SAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMGALK---------------- 456 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + AWRQ + + +LW+++ A + Sbjct: 457 ------------------------MGLSEDELQPIVDAWRQANPNIVQLWHKVDNAATRA 492 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT----- 584 I G+ + R + +K L + LPSGR L Y +G NR + T Sbjct: 493 ISTGRPLTLR------NLGFEKKSGILFITLPSGRRLAYVKPGIGVNRFGGTSITYWGQG 546 Query: 585 --RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 R+ + TYGGKL ENIVQA +RD+LAE + AG+ IV+ +HDE+V + P Sbjct: 547 VARKWQKLETYGGKLVENIVQATARDLLAEAITRIENAGHQIVMHIHDEVVIDEPINSGT 606 Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + LM P WA+GLP+ A GYE Y+K Sbjct: 607 TVADICALMNELPQWAEGLPIDAAGYECGFYQK 639 >gi|298253796|ref|ZP_06977385.1| DNA polymerase I [Gardnerella vaginalis 5-1] gi|297532132|gb|EFH71105.1| DNA polymerase I [Gardnerella vaginalis 5-1] Length = 674 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 206/710 (29%), Positives = 319/710 (44%), Gaps = 94/710 (13%) Query: 4 LFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L +D ET S ++L KCG+ KYAE D ++LF + D V++ D +P+V+ AL Sbjct: 20 LSVDLETFSSVNLGKCGVYKYAESEDFEILLFGYSVDGSEVQVVDLAQGETIPEVVLSAL 79 Query: 62 ENTDVTIVAHNSYFERTVLKACF----------------NLDIPIHRWICTLVLARSNGL 105 + VT A N+ FER L L + W CT++ + + GL Sbjct: 80 TDETVTKWAFNAQFERICLSRYLRDKGINVNPGQTGKSEGLFLNPSSWHCTMIWSATLGL 139 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYC 161 P +L+ VG L L QK+ EGK LI F C RNK H E W F Y Sbjct: 140 PMSLENVGIVLGLDKQKLTEGKNLIKYFCLPCNPTKVNGGRTRNKYFHDKEKWEQFKSYN 199 Query: 162 KGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 K DV V I ++L P+ + +YLDQ INDRG +D + ++ +T L Sbjct: 200 KRDVEVEMSIQEKLSRFPVPDFLWQEFYLDQEINDRGIGIDSLFVESAIKLDLEVKTHLM 259 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 EL+ +T + + + ++++WL + GL +E L + + V K + + +V Sbjct: 260 SELKRVTG--LENPNSVLQMRSWL-KKHGLEMESLGK---KEVAKELKTVGKELAEVLRL 313 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + ++S+V K + A D R RG +F GA+RTGR++G + QNLP+ Sbjct: 314 RQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGRFAGRLVQLQNLPQNHLPDLAE 373 Query: 340 DQIITH---LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + + + D +S +R+ I G K +VAD + IEARVLAW+AGE+ Sbjct: 374 ARSLVKQGNVEALEMLYEDIPDTLSQLIRTAFIPRTGLKFIVADFSAIEARVLAWLAGEK 433 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAST 454 W+++ F G+D+Y ++ ++ F+V + R GK+ ELALGY G A + M + Sbjct: 434 WRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMGA- 492 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 ++ + + AWR + Sbjct: 493 ---------------------------------------LDMGLTEDELQPLVDAWRSSN 513 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V+ LW ++ +A +Q + ++ + LI+ LPS R L Y Sbjct: 514 PMVTTLWWDVDRAVKQCVHEHVSVRT------HNIVFTYKSGFLIIKLPSKRCLYYVKPR 567 Query: 575 -NNRSYLN--------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 Y +T++ R +YG K ENI QA++RDIL M Y IV Sbjct: 568 VEENKYGGESVTYEGVGSTKKWERLESYGPKFVENITQAIARDILIYAMQTL--KEYRIV 625 Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDE + ET + + + LM P WA+GL L+A+GYE + Y+K Sbjct: 626 AHVHDEAIIETDKS--VSVQSVCELMGRTPPWAEGLLLRADGYECEFYKK 673 >gi|300909464|ref|ZP_07126925.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] gi|300893329|gb|EFK86688.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] Length = 644 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 204/697 (29%), Positives = 315/697 (45%), Gaps = 76/697 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S +L + G+ +YA+ D ++LF + D PV++ D +P + Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 E L+N ++ A N+ FER L + W C+ V + + GLP +L+ +G L L Sbjct: 61 EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK+ GKEL+ F CK RN P H + W+ F +Y + DV V EI ++ Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180 Query: 175 --LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 P+ E E +++DQ INDRG +D L + + +V + Q + LT + Sbjct: 181 LECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTGLA--N 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + G+ L++ + ++L + T QV R S+S+V K Sbjct: 239 PNSPLQLKDWLQQQ-GIKTNSLSKASVAQLLQT---TTGTVHQVLALRQLLSKSSVKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LPTS 349 + +AM DGR+ G LQF GA+RTGRW+G + QNLPR S E + + +P Sbjct: 295 AMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPAL 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S +R+ I S+ VAD + +EARV+AW++ E+W+ ++F ED+Y Sbjct: 355 AMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDIY 414 Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + ++ F V + + R GK+ ELALGY G A + M +T Sbjct: 415 CASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATK------------ 462 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + WR + + W ++ +A Sbjct: 463 ----------------------------LGLTDDELPPLVQMWRNASPHIVQFWWDVDKA 494 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT- 584 ++ I+ + + L L SGR L Y +G NR + T Sbjct: 495 AKECIKTHLPQTTHGMK------FIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESITF 548 Query: 585 ------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 ++ R TYG KL ENIVQA SRD+LAE M G +V+ +HDE V + P Sbjct: 549 MGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDEAVIDAP- 607 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + LMT P WA GL L A G+ S Y+K Sbjct: 608 -FNRSLDTMVQLMTKVPDWANGLILNAAGFVSDFYKK 643 >gi|303239094|ref|ZP_07325624.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2] gi|302593432|gb|EFL63150.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2] Length = 649 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 225/701 (32%), Positives = 332/701 (47%), Gaps = 79/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DLT CG+ Y A D ++LF + +DD PVEL D +P + Sbjct: 1 MRTLAIDIETFSSVDLTSCGVYTYTAAPDFQILLFGYAWDDDPVELIDLACGERLPDAIV 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 A+E+ +V A N+ FER L N + W CT + A GLP L VG ALKL Sbjct: 61 NAIESPEVIKTAFNAGFERICLSKHLNKHLKADSWRCTAIQAAMLGLPLHLDGVGTALKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK GK+LI F CK RN P+H E W+ F +YC DV V RE+ ++ Sbjct: 121 KVQKDRAGKDLIRYFSIPCKSTKSNGGRTRNLPHHAPEKWQKFKDYCVRDVEVEREVRRK 180 Query: 175 --LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 P+ KE +LW LDQ IND G VD+AL + + ++L+ E ++LT + + Sbjct: 181 IERYPIPEKELKLWLLDQKINDTGVLVDMALVNQAVKCDTQYSSRLEVEAKTLT--KLDN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + +LK WL + GL +E L++ Q +L+ + ++ R ++S++ K Sbjct: 239 PNSVAQLKEWLKEQ-GLEVESLSKQAVQNLLT---DADGEIERLLTLRQEMAKSSIAKYA 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL---PTS 349 + ++ D R+RG QF GA+RTGRW+G +F QNLP+ E+ +++ Sbjct: 295 AVQRSVCPDSRVRGLFQFYGANRTGRWAGRIFQIQNLPQNHMKDLEIARMLVKQGRFKEL 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S+ +R+ +I +G + +VAD + IEARVLAW+A E W L F+ +Y Sbjct: 355 ELLYESVPIVLSELIRTVLIPEQGCRFIVADFSAIEARVLAWLANEAWVLDTFKGHGKIY 414 Query: 410 VTTYARSFNVAPAQVTK-----DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 T +R F V ++ K + RA GKV LA GYQGG A + M + Sbjct: 415 EQTASRMFGVPVEKIAKGNPEYELRAKGKVAVLACGYQGGVNALKAMGADK--------- 465 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 T + + +AWR + R+ W ++ Sbjct: 466 -------------------------------MGLSDTELDDIVRAWRSANQRIVRFWYDV 494 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR------- 577 +A + + R K + L + LPSGR L Y + Sbjct: 495 EKAAVLAVREREPQRVGILR------FKVENGILFITLPSGRRLAYIRPKIEKDLRFDKD 548 Query: 578 --SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 +Y +Q R+ TYGG+L ENIVQ +RD LAE M+ GY IV VHDEI+ Sbjct: 549 GLTYEGLGINKQWWRQKTYGGRLVENIVQGAARDCLAEAMLRVDAKGYKIVGHVHDEIIT 608 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + + L +M WA GLPL+A+G+E+ Y+K Sbjct: 609 EMRKG-QGSLEELCGIMGQEIPWALGLPLRADGFETMFYKK 648 >gi|197303496|ref|ZP_03168535.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC 29176] gi|197297494|gb|EDY32055.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC 29176] Length = 661 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 198/715 (27%), Positives = 310/715 (43%), Gaps = 96/715 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S ID++KCG KYAE + ++LF D+ PV ++D +P + Sbjct: 2 MKELSIDLETYSDIDISKCGAYKYAESNNFEILLFGVSVDNGPVVVYDLASGDEIPAEIL 61 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD------------------IPIHRWICTLVLA 100 AL + ++ A N+ FER L + W CT++ + Sbjct: 62 AALSDENIIKWAFNASFERVCLSNWLRKHHPEYFKTYNTQGDPVQNFLDPASWKCTMIWS 121 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRL 156 GLP +L+ VG LKL QKM+EGK+LI FC K RN P H + W Sbjct: 122 AYMGLPLSLEGVGAVLKLQDQKMKEGKDLIKYFCSPCKPTKVNGGRTRNLPEHAPDKWET 181 Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 F Y + DV V I +RL P+ +++DQ IND G +D+ + + Sbjct: 182 FKTYNRRDVEVELAIKQRLSKFPVPDSVWHEYHIDQEINDSGIMLDMDVVENAIAFDERS 241 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 ++ L ++++T + + + ++K WL G+ E L + ++ K+ Sbjct: 242 KSALITAMKNITN--LDNPNSVVQMKQWLSD-NGVETESLGKKEVAGLI---KETDGDIS 295 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + R++ ++S+V K + A+ DGR G QF GA+R+GRW+G + QNLP+ Sbjct: 296 KALKLRLQLAKSSVKKYQAMQNAVCKDGRAHGMFQFYGANRSGRWAGRLIQLQNLPQNHM 355 Query: 335 SHEELDQIITHLPT---SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 S + + D +S +R+ IA G K +V+D + IEARVLA Sbjct: 356 SDLTEARELVRTGDYDTLDMLYDDIPDTLSQLIRTAFIARPGYKFIVSDYSAIEARVLAH 415 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQ 449 +AGE W+ K F G+D+Y + ++ F V + R GK+ ELALGY G A + Sbjct: 416 LAGETWRSKVFAEGKDIYCASASQMFGVPVKKHGINSHLRQKGKIAELALGYGGSVGALK 475 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 M + +E + + + Sbjct: 476 SMGA----------------------------------------LEMGLTEEELQPLVDS 495 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 WR + ++ W + A + I+ +V ++ L++ PSGR L Sbjct: 496 WRSSNPMITAFWWNVDNAIKTAIKMHIPT------EVNGIHFCYKSGMLLIKRPSGRVLS 549 Query: 570 Y--RDVGNNRSYLNTT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 Y +G NR + T++ R +YG K ENIVQAVSRDIL M Sbjct: 550 YVKPKIGENRFGGESVTYEGIGSTKKWERIESYGPKFVENIVQAVSRDILCNAMKTLRH- 608 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV VHDE++ E + + + M + W G+ L+A+GYE+ Y+K Sbjct: 609 -CFIVGHVHDELIIECSSGVD--LNEICKQMGRSLDWMPGILLRADGYETNFYKK 660 >gi|304439199|ref|ZP_07399117.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372331|gb|EFM25919.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 643 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 220/697 (31%), Positives = 332/697 (47%), Gaps = 77/697 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S +DL K G+ KYAE D ++LFA+ DD V++ D ++P+ + Sbjct: 1 MKKISIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGEVKVIDLASGEIIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + + A N+ FER L + W CT++ + GLP +L+ VGE LKL Sbjct: 61 SALSDESIEKWAFNANFERVCLSRFLEERLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIFKR 174 QKM EGK LI F CK + RN P+H W +F EY + DV EI K+ Sbjct: 121 DKQKMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLGKWYIFKEYNQRDVETEMEIKKK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+ E E +++DQ INDRG +D L + + ++ R + LT + + Sbjct: 181 LSVFPMPQSEWENYWVDQNINDRGILIDEILVDSAIKFDEILREENMDRAIELTG--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + GL ++ L + + V S+ K +V R S+S+V K + Sbjct: 239 PNSPLQLKEWLNKK-GLEIDSLAK---KDVESAIKNAEGDIKEVLELRQELSKSSVRKYD 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LPTS 349 + + R RG +QF GA+RTGR+SG + QNL R + +L + + T Sbjct: 295 AMKNVKGKENRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARSLVKNRDYETM 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 P I+S +R+ I EG + +++D + IEARVLAW+A EQW L AFE GED+Y Sbjct: 355 EFLYESPSDILSQLIRTAFIPKEGTRFIISDFSAIEARVLAWIAEEQWVLDAFENGEDIY 414 Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 T +R F V + R GK+ LA GYQG A + M Sbjct: 415 CRTASRMFGVPVEKHGINGHLRQKGKIATLACGYQGALGALKAMG--------------- 459 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 IE + + +WR+ + + LW ++ Sbjct: 460 -------------------------GIEMGLSEDELQSIVDSWREANPNIVSLWWDIDSV 494 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR--DVGNNRSYLNT--- 582 ++ ++ + + + + +K L + LPS R L Y +G NR + Sbjct: 495 VKRVVKTRS------KEEYKNLVISYEKGILFIELPSKRRLAYPKAKIGMNRFGGESVVY 548 Query: 583 ----TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 + + +YGGK ENIVQA++RDILAE MM K G++IV+ +HDE+V E Sbjct: 549 EGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIE--- 605 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +D + + +M+ P WA GL L A+G+ES+ Y+K Sbjct: 606 SDSSSIEEVNQIMSIVPGWASGLILDADGFESEFYKK 642 >gi|315122935|ref|YP_004063424.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496337|gb|ADR52936.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 675 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 397/677 (58%), Positives = 488/677 (72%), Gaps = 4/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M LFID ETRSP L K G+ YAE+ + L A+ +D ++LWDC +PVMP L + Sbjct: 1 MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L++ V VAHNS FER + K N+ IP RWICT LAR NGLP++LK ALK Sbjct: 61 LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFCKG E YD + NH +AW+LFGEYCK DV TRE++KRL PL Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E+ LW LDQ INDRGY +D+ L L +++ ER +LD+E + LT G++ S+R + Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFERERLDEEFKELTAGVIGSARKTDL 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L +LFL TGL L D+ E+T LS + + + NNR+ +S+SA+LKLNTL A+ Sbjct: 241 LNKYLFLYTGLDLPDMAESTVLTALSQ-PDIPQLSKAILNNRLSSSQSAILKLNTLSGAV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 + D RLRGTLQF GASRTGRWSGCVF PQNLPR + + +E++++I L + DPL+ Sbjct: 300 SPDNRLRGTLQFFGASRTGRWSGCVFQPQNLPRQTLAVDEIERLIRGLDSG-VPIKDPLR 358 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 SDCVRSC+IAS GKKL+VADLAGIEARVLAW+AGEQWKL AF GED+Y T Y+++FN Sbjct: 359 FASDCVRSCIIASPGKKLIVADLAGIEARVLAWVAGEQWKLNAFANGEDIYKTAYSKAFN 418 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 V + VTKDQRAIGKVMELALGYQGGA+ FQKMAST GLNL F+ +K + E+WE A Sbjct: 419 VPLSDVTKDQRAIGKVMELALGYQGGARVFQKMASTLGLNLQQFSKSIKNTATSEDWEQA 478 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 + C WMQE HPE A+ D FIGTACE VK+AWR KH V +LW + +AF+ I++G++I Sbjct: 479 QRRCLWMQETHPEFAVPDPFIGTACELVKEAWRAKHKGVVQLWKDCEEAFDCVIKDGRSI 538 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ VP + MKK N+ + LPS R LVYRDV ++RSYLNT T Q+ RE TYGGKLT Sbjct: 539 SARRVLGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLT 598 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDILA GM+NATKAGYDIVLTVHDEIVCE PDT EF++ L LMT NP+WA Sbjct: 599 ENIVQAISRDILATGMINATKAGYDIVLTVHDEIVCEVPDTPEFSSDDLCSLMTRNPTWA 658 Query: 659 KGLPLKAEGYESKRYRK 675 KGLPLKAEGYE+ RYRK Sbjct: 659 KGLPLKAEGYEAVRYRK 675 >gi|327461124|gb|EGF07457.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus sanguinis SK1057] Length = 643 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 218/698 (31%), Positives = 330/698 (47%), Gaps = 79/698 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DLTKCG+ +Y + ++LFA+ D++ ++ D V +P+ + Sbjct: 1 MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + + A N+ FER L + W CT VLA S GLP +L+ VG L + Sbjct: 61 LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QKM+EG LI F CK + +RN P+H E W LF YCK DV V + I R Sbjct: 121 EEQKMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVEVEQAIRVR 180 Query: 175 L--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L PL EQ + LDQ INDRG VD L + ++ + L+ + + Sbjct: 181 LRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYELSG--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + +LK WL E G+ ++ L + + V K+ + +++ R+ S+++V K Sbjct: 239 PNSVSQLKGWL-EEQGVFMDSLGK---KEVAKHLKEADGEVLEMLKLRLLMSKTSVKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LPTS 349 + + SDGR+ G LQF GA+RTGRW+G + QNLP+ L + + + T Sbjct: 295 AIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVKEGQVETL 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 T + ++S+ +R+ + G + +VAD A IEARVLAW++GE W+L+ FE G D+Y Sbjct: 355 DTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEVFEQGGDIY 414 Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 + + F V + R GK+ ELALGY G A M + GL Sbjct: 415 CASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMGALDMGLEEE------ 468 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + + WR + + W E+ + Sbjct: 469 -----------------------------------ELQPLVNQWRSANPHIVAFWWEIDK 493 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT--- 583 +Q E + + + + + L + LPSGR L Y + Sbjct: 494 VAKQVYETREP------KKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNAFGKPGLT 547 Query: 584 ------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 +++ TR TYG KL ENIVQ ++RD+LA GM+ + G IVL VHDE V E Sbjct: 548 YEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHDEAVVEVR 607 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + + + L+ + P WA+GLPL+A+GY + Y+K Sbjct: 608 E---ESVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642 >gi|325687766|gb|EGD29787.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus sanguinis SK72] Length = 643 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 218/698 (31%), Positives = 329/698 (47%), Gaps = 79/698 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DLTKCG+ +Y + ++LFA+ D++ ++ D V +P+ + Sbjct: 1 MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + + A N+ FER L + W CT VLA S GLP +L+ VG L + Sbjct: 61 LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QKM+EG LI F CK + +RN P+H E W LF YCK DV V + I R Sbjct: 121 EEQKMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVEVEQAIRVR 180 Query: 175 L--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L PL EQ + LDQ INDRG VD L + ++ + L+ + + Sbjct: 181 LRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYELSG--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + +LK WL E G+ ++ L + + V K+ + +++ R+ S+++V K Sbjct: 239 PNSVSQLKGWL-EEQGVFMDSLGK---KEVAKHLKEADGEVLEMLKLRLLMSKTSVKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL---PTS 349 + + SDGR+ G LQF GA+RTGRW+G + QNLP+ L + + T Sbjct: 295 AIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVKEGQFETL 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 T + ++S+ +R+ + G + +VAD A IEARVLAW++GE W+L+ FE G D+Y Sbjct: 355 DTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEVFEQGGDIY 414 Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 + + F V + R GK+ ELALGY G A M + GL Sbjct: 415 CASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMGALDMGLEEE------ 468 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + + WR + + W E+ + Sbjct: 469 -----------------------------------ELQPLVNQWRSANPHIVAFWWEIDK 493 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT--- 583 +Q E + + + + + L + LPSGR L Y + Sbjct: 494 VAKQVYETREP------KKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNAFGKPGLT 547 Query: 584 ------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 +++ TR TYG KL ENIVQ ++RD+LA GM+ + G IVL VHDE V E Sbjct: 548 YEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHDEAVVEVR 607 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + + + L+ + P WA+GLPL+A+GY + Y+K Sbjct: 608 E---ESVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642 >gi|227530261|ref|ZP_03960310.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] gi|227349815|gb|EEJ40106.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] Length = 644 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 202/697 (28%), Positives = 314/697 (45%), Gaps = 76/697 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S +L + G+ +YA+ D ++LF + D PV++ D +P + Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL++ + A N+ FER L + + W C+ V + + GLP +L+ VG L L Sbjct: 61 KALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGSVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK+ GKEL+ F CK RN P H + W+ F +Y + DV V EI ++ Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180 Query: 175 --LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 P+ E E +++DQ INDRG +D L + + +V + Q + LT + Sbjct: 181 LECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTGLA--N 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + + L++ + ++L + T QV R S+S++ K Sbjct: 239 PNSPLQLKDWLQQQ-DIKTNSLSKASVAQLLQT---TTGTVHQVLALRQLLSKSSIKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LPTS 349 + +AM DGR+ G LQF GA+RTGRW+G + QNLPR S E + + +P Sbjct: 295 AMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPAL 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S +R+ I S+ VAD + +EARV+AW++ E+W+ ++F ED+Y Sbjct: 355 AMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDIY 414 Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + ++ F V + + R GK+ ELALGY G A + M +T Sbjct: 415 CASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGAT------------- 461 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + WR + + W ++ +A Sbjct: 462 ---------------------------NLGLTDDELPPLVQMWRNASPHIVQFWWDVDKA 494 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR-------S 578 ++ I+ + + L L SGR L Y +G NR Sbjct: 495 AKECIKTHLPQTTHGMK------FIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESITF 548 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 N T ++ R TYG KL ENIVQA SRD+LAE M +V+ +HDE V + P Sbjct: 549 MGNNTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTVVMHIHDEAVIDAPS 608 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + LMT P WA GL L A G+ S Y+K Sbjct: 609 N--RSLDTMVQLMTEVPDWANGLILNAAGFVSDFYKK 643 >gi|167746061|ref|ZP_02418188.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662] gi|167654576|gb|EDR98705.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662] Length = 663 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 190/715 (26%), Positives = 314/715 (43%), Gaps = 96/715 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + T+ ID ET S +DL KCG+ KY ++ ++LF + D V + D +P + Sbjct: 4 IKTISIDIETYSDVDLQKCGVYKYVQSDSFEILLFGYSVDGGEVSVVDLKQGEKIPMEII 63 Query: 59 EALENTDVTIVAHNSYFERTVLKACF------------------NLDIPIHRWICTLVLA 100 AL + ++T A N+ FER L + W C++V + Sbjct: 64 MALTDENITKWAFNANFERVCLSEYLRRFYPKKFVSYSIPEDSVGNYLDPSSWKCSMVWS 123 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRL 156 GLP L G L L QK+ EGKELI FC K RN P H W + Sbjct: 124 AYMGLPLLLAGAGAVLGLEEQKLTEGKELIRYFCVPCKPTKVNGGRTRNLPQHDMIKWEM 183 Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 F +Y K DV V I +L P+ + E ++LDQ INDRG +D+ + + Sbjct: 184 FKKYNKRDVEVEMSIQDKLRHFPVPNFVWEEYHLDQEINDRGITLDMDVVTNAIAFDEKS 243 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 + L +++ +T + + ++++K WL GL ++ L + VL++ + Sbjct: 244 KAVLADKMQEMTG--LENPNSVQQMKQWLSC-NGLEMDSLGKKEVAAVLNTAPEP---LK 297 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 V R + ++S+V K + A+ SDGR RG F GA+R+GRW+G + QNLP+ Sbjct: 298 TVLTLRQQLAKSSVKKYQAMANAVCSDGRARGMFMFYGANRSGRWAGRLIQLQNLPQNHM 357 Query: 335 SHEELDQIITHLPTSIT---SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 S E + + D +S +R+ + +G + +V+D + IEARVL+ Sbjct: 358 SDLEEARSLVKQGNYEAMNMLYDDVPDTLSQLIRTAFVPRKGMEFIVSDFSAIEARVLSH 417 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQ 449 +AGE+W+ F +G D+Y + ++ F V + R GK+ ELALGY G A + Sbjct: 418 LAGEKWRTDVFASGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGALK 477 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 M + ++ + + Sbjct: 478 SMGA----------------------------------------LDMGLEEDELKPLVDM 497 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 WR+ + + +LW ++ +A ++ ++ + + + L + LPSGR L Sbjct: 498 WREANPNIVKLWWDVDRAVKKAVKQREP------SSIGSITFSYKSGMLFIGLPSGRCLS 551 Query: 570 YRDVG--------NNRSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 Y + +Y T++ R +YG K ENIVQA+SRDIL + + Sbjct: 552 YVKPKMGINQFGSESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILMYAIRTLSH- 610 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 I VHDE++ E + + ++ M P W +G+ L+A+GYE++ Y+K Sbjct: 611 -CFICGHVHDELIIECSKS--VSLDVICEQMGRTPPWIEGILLRADGYETEFYKK 662 >gi|304436359|ref|ZP_07396335.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370628|gb|EFM24277.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 641 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 199/704 (28%), Positives = 304/704 (43%), Gaps = 93/704 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M +L +D ETRS +D+ + G+ +Y AED ++LF + D V++ D V +PQ + Sbjct: 1 MKSLSVDLETRSSVDIGQSGVYRYTEAEDFAILLFGYSVDGGAVQVIDLVRGERIPQEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACF-----------NLDIPIHRWICTLVLARSNGLPS 107 +AL + V A N+ FER L + W CT+V + GLP Sbjct: 61 DALADDSVIKWAFNANFERVCLSRYLSDLGMLHTTERAHFLSPRSWRCTMVWSAYMGLPL 120 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 +L V L L QKM EGK LI F HE E W LF Y + DV V Sbjct: 121 SLAVVARVLGLEEQKMTEGKALIRYFSTPPFHEPTG--------EKWELFKSYNRRDVEV 172 Query: 168 TREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 I +R P+ E + LDQ INDRG C+D+ +I + K+ L++L Sbjct: 173 EMAIQQRLFKYPVPQSVWEEYVLDQEINDRGICLDMPFVENAVKIDAHTKEKMTDRLKTL 232 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 T + + + ++K WL + G+ E L + T +L++ +V R + ++ Sbjct: 233 TG--LENPNSVAQMKAWLKEQ-GVETESLDKKTVAALLTNVSA---LLKEVLELRQQLAK 286 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 S+V K + + +D R RG QF GA+RTGR+SG QNLP+ ++ E + + Sbjct: 287 SSVKKYQAMQNTVCADNRARGMFQFYGANRTGRFSGRHIQLQNLPQNHLANLEYARSLVR 346 Query: 346 LP---TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 ++S +R+ I EG+K +VAD + IEARVL+W+A E+W++ F Sbjct: 347 QGNFAALELLYESVSDVLSQLIRTAFIPKEGRKFIVADFSAIEARVLSWLAKERWRMDVF 406 Query: 403 ETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 D+Y T R F+ + R GK ELA GY G A + Sbjct: 407 ANDGDIYCATAGRMFHCNVVKHGENGHLRQKGKQAELACGYGGSVGALKAFG-------- 458 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A+E + + AWR + + + Sbjct: 459 --------------------------------ALESGMKEDELKPLVDAWRTANPNIVDF 486 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRS 578 W + +A + I+ + + + LPSGR L Y +G N+ Sbjct: 487 WWAVDRAAKDCIKERSITGTHG------IKFIYQSGMMFIELPSGRRLAYVKPRIGENQF 540 Query: 579 YLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 + T ++ R +YG KL ENI QA+SRD+L M IV VHDE Sbjct: 541 GGESITYMGLDLSKKWARIESYGPKLVENITQAISRDLLCYAMQTLRSMD--IVAHVHDE 598 Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++ E + + S M P WA+GL L+A+G+E + Y+K Sbjct: 599 LIIEC--DERVSLSSACEQMARTPLWAEGLLLRADGFECQFYQK 640 >gi|313896425|ref|ZP_07829976.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312974849|gb|EFR40313.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 650 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 205/713 (28%), Positives = 311/713 (43%), Gaps = 102/713 (14%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M +L ID ETRS +D+ K G+ +YAE D ++LF + D V++ D + +PQ + Sbjct: 1 MESLSIDLETRSSVDIGKSGVYRYAEAEDFAILLFGYSVDGGAVQVIDIANGEQIPQEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKAC---FNLDIP-----------------IHRWICTLV 98 +AL + V A N+ FER L + + H W CT+V Sbjct: 61 DALTDESVIKWAFNANFERVCLSRYLSDLGIALDPFHDNHPLSTECARFLSPHSWRCTMV 120 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 + GLP +L VG L L QKM EGK LI F HE + W LF Sbjct: 121 WSAYMGLPLSLAGVGRVLGLEEQKMNEGKALIRYFSTPPFHEPTGAK--------WDLFK 172 Query: 159 EYCKGDVTVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 Y + DV V I KR P+ E + LDQ INDRG +D+ L QI + Sbjct: 173 SYNRRDVEVEMAIQKRLSKYPVPQSVWEEYVLDQEINDRGIRLDMPLVENAVQIDVRTKE 232 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276 KL L++LT + + + ++K WL + G+ E L + + V + + +V Sbjct: 233 KLTDRLKTLT--SLENPNSVTQMKAWLKEQ-GVETESLDK---KSVTALLANVPDPLKEV 286 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R + ++S+V K + + SDGR RG QF GA+RTGR+SG QNLP+ + Sbjct: 287 LELRQQLAKSSVKKYQAMQNTVCSDGRARGMFQFYGANRTGRFSGRHIQLQNLPQNHLAD 346 Query: 337 EELDQIITHLP---TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 E + + ++S +R+ I+ EG+K +VAD + IEARVL+W+A Sbjct: 347 LEYARSLVRQGSFAALELLYESVPDVLSQLIRTAFISKEGRKFIVADFSAIEARVLSWLA 406 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKM 451 E+W++ F D+Y T R F+ + R GK+ EL+ GY G A + Sbjct: 407 KERWRMDVFANDGDIYCATAGRMFHCNVVKHGENGHLRQYGKLAELSSGYGGSVGALKAF 466 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A+E + AWR Sbjct: 467 G----------------------------------------ALESGMKEEELNPLVDAWR 486 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY- 570 + + + W + +A + I+ + R + + + LP GR L Y Sbjct: 487 AANPNIVDFWWAVDRATKDCIKERSTKVTHGIR------FIYQGSMMFIELPCGRRLAYV 540 Query: 571 -RDVGNNR------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 +G N+ +Y+ +++ R +YG KL EN+ QA+SRDIL M Sbjct: 541 KPRIGENQFGGESVTYMGLNLSKKWARIESYGPKLVENVTQAISRDILCYAMQTLRTMD- 599 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV VHDE++ E + + S + M P WA GLPL+A+G+E + Y+K Sbjct: 600 -IVAHVHDELIIEC--DERVSLSAICEQMARTPPWADGLPLRADGFECQFYQK 649 >gi|150391701|ref|YP_001321750.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF] gi|149951563|gb|ABR50091.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF] Length = 649 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 208/701 (29%), Positives = 314/701 (44%), Gaps = 82/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + TL D ET S ++L KCG+ +Y A+D ++LFA+ D V++ D +P ++ Sbjct: 4 IKTLHCDIETYSSVNLAKCGVYRYVQADDFEILLFAYSTDGSEVKIIDLARGEKIPPLIL 63 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 ALE+ V AHN+ FER I W CT+ A GLP +L VG Sbjct: 64 SALEDDKVIKYAHNASFERICFSRFLGYPVGKYISPESWRCTMTWAAYMGLPLSLVGVGA 123 Query: 115 ALKLSSQKMEEGKELIARFCK---GETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTRE 170 L L QKM EGK+LI FC RN P + E W F Y DV E Sbjct: 124 VLGLGKQKMTEGKDLIRFFCGPCSPTKTNGNRTRNLPSDDPEKWERFKSYNIRDVEAEME 183 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I ++L P+ + ++L + IND G VD+ + ++ TKL +++ +T Sbjct: 184 IEQKLIKFPVPDFIWDEYHLSERINDSGIKVDMDFVKQAIAMNEISHTKLMDQMQEIT-- 241 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + ++++K WL GL + L + +L K +V R + ++S+V Sbjct: 242 ELDNPNSVQQMKDWLSD-NGLETDTLGKKAVAELL---KDAPEHLAEVLKLRQQLAKSSV 297 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH--- 345 K + A+ SDGR+RG FLGA+RTGR+S + QNLP+ + + I Sbjct: 298 KKYTAMENAVCSDGRIRGMFTFLGANRTGRFSSKIVQLQNLPQNHMMDLKEARSIVKNGD 357 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 D +S +R+ + EG K +VAD + IEARVL+W+AGEQW+ + F G Sbjct: 358 SEALELLYEDIPDTLSQLIRTAFVPKEGNKFIVADFSAIEARVLSWLAGEQWRNEVFANG 417 Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+Y + ++ F V + R GK+ ELALGY G A + M Sbjct: 418 GDIYCASASQMFRVPVEKHGVNAHLRQKGKIAELALGYGGSVGALKAMG----------- 466 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 A+E + + AWR + + + W + Sbjct: 467 -----------------------------ALEMGLEEEELKPLVNAWRASNPNIVKFWWD 497 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581 + + ++ I+ K+ +V + L ++LPSGR L Y ++G N Sbjct: 498 VDREVKKCIKEKKSQ------EVQNIKFHYMSGMLFIVLPSGRKLAYVKPNIGENIFGGE 551 Query: 582 T-------TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + T++ R +YG K ENIVQA+SRDIL M + IV VHDE++ Sbjct: 552 SVTYEGVGATKKWERIESYGPKFVENIVQAISRDILMYAMKTLS--TCSIVAHVHDEVII 609 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + M+ M P WAKGL L A+GYE Y+K Sbjct: 610 EA--DQSLSLDMVCKQMGRVPPWAKGLLLDADGYECDFYKK 648 >gi|297585291|ref|YP_003701071.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] gi|297143748|gb|ADI00506.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] Length = 655 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 215/698 (30%), Positives = 324/698 (46%), Gaps = 77/698 (11%) Query: 3 TLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 L ID ET S +DL + G+ YAE ++L A+ FDD V + D V D +P + +A Sbjct: 9 VLSIDIETFSNVDLKESGVYAYAEGEGFTILLLAYAFDDEEVIVVDLVQDEPIPTTVLKA 68 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + + A+N+ FERT L A N +P +W C+ V A + GLP L V L L Sbjct: 69 LIDPSIMKTAYNANFERTCLAAYLNQPMPTEQWHCSSVHALTLGLPGHLDGVANVLNLGD 128 Query: 121 QKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR-- 174 QK GK LI F CK RN P H E W + YC+ DV V R + KR Sbjct: 129 QKDNAGKALIRYFSVPCKPTASNGHRTRNLPEHDLEKWHAYKAYCRQDVEVERALRKRLA 188 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 P+ KEQ LW LDQ +ND G +D L Q+ E+ L +E + +T + + Sbjct: 189 SNPIPEKEQRLWELDQRMNDEGVRIDTDLVRQAIQLDAKEQALLLEEAKQITG--LENPN 246 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 + +L+ WL G+ L + +L + L +V R S+++V K + Sbjct: 247 SVAQLRDWLTSR-GIETSGLAKKQVSDLLQT--DLPGDVRRVLILRQMMSKTSVKKYEAM 303 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS-- 352 ++ DG +RG LQF GA+RTGRW+G + NLP+ + + + Sbjct: 304 DRSICKDGHIRGLLQFYGANRTGRWAGRIVQAHNLPKHRIGDLDEARQLVKTGNYELITT 363 Query: 353 -DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 ++S R+ I +G + VV+D + IEARV+AW+AGE+W++K FE +Y Sbjct: 364 LYGSLADLLSQLTRTAFIPKKGYRFVVSDFSAIEARVIAWLAGERWRMKVFEGHGKIYEA 423 Query: 412 TYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKT 468 + ++ F V ++TK R GK+ ELALGY G A +M + GL+ + Sbjct: 424 SASQMFGVPIEEITKASPLRQKGKIAELALGYGGAKGALTQMGALEMGLSEDELPA---- 479 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + KAWR+ + + LW +L ++ Sbjct: 480 -------------------------------------LVKAWRKANPNIVNLWYDLEKSA 502 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---------GNNRSY 579 + ++ K + A+ + L LPSGRSL Y +Y Sbjct: 503 FEAVKWQKVVTAK-----SGIQFYGGSGLLRARLPSGRSLSYVRPQIGIDERFGREEITY 557 Query: 580 LN--TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 ++Q R TYGGK+ EN+VQA++RD LAE M+ AGY I VHDE+V E P Sbjct: 558 EGVMQGSKQWGRISTYGGKIAENMVQAIARDCLAEAMLRLDAAGYQIRFHVHDEVVIEVP 617 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++ + + +M+ WA GLP+ A+ +E+ Y+K Sbjct: 618 -NEQDAKADIERIMSEPIDWAPGLPMNADSFETGYYKK 654 >gi|331085755|ref|ZP_08334838.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406678|gb|EGG86183.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 646 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 219/696 (31%), Positives = 320/696 (45%), Gaps = 75/696 (10%) Query: 2 ATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59 TL ID ET S +DL CG+ KY+ ++L A+ DD D + P+ E Sbjct: 3 RTLAIDIETYSDVDLISCGVYKYSSSPHFEILLIAYSVDDEETVCIDVANGEEPPKEFIE 62 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 L + VT A N+ FERT ++ W CT V A LP +L+ VG L L Sbjct: 63 MLFDDTVTKTAFNANFERTCFSNYYHHSFRPEAWRCTAVQATMLALPLSLEGVGAVLGLD 122 Query: 120 SQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKRL 175 QKM EGKELI F CK RN P E WR F YC DV V ++I +RL Sbjct: 123 KQKMTEGKELIKYFCSPCKATKSNGGRTRNLPKDAPEKWRWFKTYCIRDVDVEKQIRQRL 182 Query: 176 E--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 P+ +EQE++ LDQ INDRG VD L + + + LT + + Sbjct: 183 AKFPIPKREQEIYCLDQRINDRGIMVDRNLVNHAVACDLLYKETATARAYELTG--LENP 240 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 + +LK WL + GL ++ L + T + + + +V R+ S+++V K Sbjct: 241 NSVSQLKLWLKEK-GLEVDSLAKDTVKDLSMKAEGD---VQEVLKLRLATSKTSVKKYEA 296 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---SI 350 + ++ ++ R+ G LQF GA+RTGRW+G + NLP+ EL + + Sbjct: 297 IDRSVCAENRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHLPDLELARALVSEGRYEEVE 356 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 ++S+ +R+ +A G + +++D + IEARVLAW+AGE+W+L+ FET +Y Sbjct: 357 LFYESTPNVLSELIRTAFVAKPGCRFIISDYSAIEARVLAWLAGEEWRLQVFETHGKIYE 416 Query: 411 TTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + + F+VA ++TK R GK+ ELALGY G A M Sbjct: 417 ASASAMFHVAIEEITKTSPLRQKGKISELALGYGGAVGALTSMG---------------- 460 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 A++ + WR + ++ W + +A Sbjct: 461 ------------------------ALKMGLTEEELPGLVSTWRSANPHITAFWWAVDEAA 496 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNNRSYL 580 + + K + V + L + LPSGR L Y +Y Sbjct: 497 VTAVRDKKPSKVGR------VSFEYKSGILFVTLPSGRKLSYVKPRMMLNKFGREGLTYE 550 Query: 581 N-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 +++ R TYG KL ENIVQA SRDILAE M+ K G+DIV VHDE+V E PD Sbjct: 551 GIGESKKWMRLETYGPKLVENIVQAASRDILAEAMLRLEKEGFDIVCHVHDEVVLEVPDG 610 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + + +M NP W +GLPLKA G+ES Y+K Sbjct: 611 -KSSVEEVNEIMAVNPVWTEGLPLKAAGFESPFYKK 645 >gi|304389855|ref|ZP_07371814.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327031|gb|EFL94270.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 655 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 226/706 (32%), Positives = 317/706 (44%), Gaps = 83/706 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TLF D E+ SP L K G+ YAE D ++LF + D PV++ D MP + Sbjct: 1 MRTLFCDIESFSPAQLAKTGVYLYAEHPDFDLLLFGYSIDGGPVKVVDLAGGQSMPDEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD---------IPIHRWICTLVLARSNGLPSAL 109 AL ++ V AHN+ FER L A + +W CT++ + GLP +L Sbjct: 61 AALVDSSVVKWAHNAAFERVCLSAWLRAHHSELLGEGFLDPRQWRCTMIWSAYLGLPMSL 120 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGE---THECLYDRNKPN-HREAWRLFGEYCKGDV 165 AV LKL QK GK+LI +FC RN P+ W F +Y + DV Sbjct: 121 DAVAAVLKLDVQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRRDV 180 Query: 166 TVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V I R P+ E + + LDQ IND G +D L + + R + Sbjct: 181 EVELAIHDRLAFFPMPEAEWDTYALDQCINDAGILLDHTLVDNAVAVDEHHRNASLARAQ 240 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 LT + + +LK WL G LE L + V ++ T +V R Sbjct: 241 KLTG--LDNLNSPIQLKQWLVTR-GCELESLAK---AEVDAALDTATGVVKEVLELRGDL 294 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K + +DGR RG +QF GA RTGR++G + QNLPR + + + Sbjct: 295 AKSSVKKYQAMHNVAGADGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARSL 354 Query: 344 T---HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +L +S +R+ I S G + +VAD + IEARV+AW+AGE L Sbjct: 355 VQTGNLDALELLYESVPDTLSQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGETTTLA 414 Query: 401 AFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 AF G+DLY T +R F+V + + R GK+ LA GY G A + M Sbjct: 415 AFREGKDLYCETASRMFDVPVEKHGINGELRQKGKIAVLACGYGGSVGALKAMG------ 468 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + AWRQ + + Sbjct: 469 ----------------------------------AFTMGLAEHELKPIVDAWRQANPHIV 494 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 +LW ++ QA I + + I R R + L + LPSGR L Y +G N Sbjct: 495 QLWADVEQAAIAAISSRQPIRLRNLR------FSVESGILFIELPSGRRLAYVQPRLGEN 548 Query: 577 R-------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 R TT R+ + TYGGKL ENIVQA++RD+L GM KAG+ IV+ VH Sbjct: 549 RWGGTSITYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVVGMHAVAKAGHRIVMHVH 608 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DEIV + P +F + LM++ P+WA+GLPL A+GYE YRK Sbjct: 609 DEIVIDEPTNLDFAVADACKLMSTLPAWAEGLPLDADGYECNYYRK 654 >gi|76786923|ref|YP_329353.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909] gi|76561980|gb|ABA44564.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909] Length = 651 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 207/705 (29%), Positives = 315/705 (44%), Gaps = 87/705 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + L ID ET +DL K G+ YAED ++L A D+ PV ++D +P + Sbjct: 3 IKELSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLT-KENLPDQIL 61 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109 +AL N + A N+ FER L P + W C++V + GLP +L Sbjct: 62 QALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSMVWSAYLGLPLSL 121 Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165 + VG LKL QK++EG ++I FC K RN P+H + W F Y K DV Sbjct: 122 EGVGTVLKLKEQKLKEGGDVIRYFCLPCKPTKINGGRKRNFPHHAPDKWAAFINYNKRDV 181 Query: 166 TVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V I +L P+ E ++ DQ INDRG +DV I + ++K+ +EL+ Sbjct: 182 EVELAIKNKLRNHPVPDFLWEEYHQDQNINDRGIGIDVDFVKAAITIDEESKSKIQEELK 241 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 LT + + + ++ WL G+ L + + +L T +V R +A Sbjct: 242 ELTG--LENPNSVLQMIGWLREH-GVTTNSLDKKAVKELLKVVDAKT---TKVLKLRQQA 295 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K +V + DGR RG QF GA+RTGRW+G + QNLP+ + + + Sbjct: 296 AKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLKEARDL 355 Query: 344 THLPTSITSD--PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +D +S +R+ + S+GKK +V D + IEARVL+ +AGE+W+ Sbjct: 356 FKTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSMV 415 Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 FE G+D+Y + ++ F V + D R GK+ ELA GY G A + M + Sbjct: 416 FEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMGAI----- 470 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + +WRQ + + Sbjct: 471 -----------------------------------DMGLDEQELQPLVDSWRQANPNIVL 495 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV------ 573 W ++ +A + I+ K + K K L + LPSGR L Y Sbjct: 496 FWWDVDKAVKTAIKYQKQTETHG------IQFKVRKGMLFITLPSGRKLAYVKPKMGENQ 549 Query: 574 --GNNRSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 G + +Y T T ++ R +YG K ENI+QA+SRDILA M + IV VHD Sbjct: 550 FGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQL--KDFRIVGHVHD 607 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 EI+ E + N + LM P W + L+A+GYE Y+K Sbjct: 608 EIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650 >gi|315656936|ref|ZP_07909823.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492891|gb|EFU82495.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 655 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 227/706 (32%), Positives = 319/706 (45%), Gaps = 83/706 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TLF D ET SP+ L K G+ Y E D ++LF++ D PVE+ D + MP + Sbjct: 1 MRTLFCDIETFSPVQLAKAGVYPYCEHPDFDLLLFSYSVDGGPVEIVDLANGQSMPDEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD---------IPIHRWICTLVLARSNGLPSAL 109 AL + DV AHN+ FER L A + + +W CT+V + GLP +L Sbjct: 61 AALVDPDVVKWAHNAAFERVCLSAWLHRHHSELLGDGFLDPRQWRCTMVWSAYLGLPMSL 120 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGE---THECLYDRNKP-NHREAWRLFGEYCKGDV 165 A+ LKL QK G++LI +FC RN P W F +Y + DV Sbjct: 121 DAIAAVLKLDVQKDSAGRKLIKQFCTPATPSVLNGGKHRNPPSADPTGWAHFIDYNRRDV 180 Query: 166 TVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V + I R P+ E + + LDQ IND G +D L + + R + Sbjct: 181 EVEQAIHDRLACFPMPESEWDTYALDQRINDAGILLDHTLVDNAVAVDEHHRNASLARAQ 240 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 LT + + +LK WL G LE L + V S+ T +V R Sbjct: 241 KLTG--LDNPNSPIQLKQWLATR-GCELESLAK---AEVDSALDTATGAVKEVLELRGDL 294 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K + SDGR RG +QF GA RTGR++G + QNLPR + + + Sbjct: 295 AKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARTL 354 Query: 344 T---HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +L +S +R+ I S G + +VAD + IEARV+AW+AGE L+ Sbjct: 355 VRTGNLDALELLYESVPDTLSQLIRTAFIPSTGHRFIVADFSAIEARVIAWLAGETSTLE 414 Query: 401 AFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 AF G+DLY T +R F V + + R GK+ LA GY G A + M Sbjct: 415 AFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKIAVLACGYGGSVGALKAMG------ 468 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A+ + + AWRQ + + Sbjct: 469 ----------------------------------ALNMGLAEHELKPIVDAWRQANPHIV 494 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 LW ++ +A I + + I R R + + LPSGR L Y +G N Sbjct: 495 GLWADVEEAAIAAISSRQPIRLRNLR------FSVESGIFFIELPSGRRLAYVQPRLGEN 548 Query: 577 R-------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 R TT R+ + TYGGKL ENIVQA++RD+L GM KAG+ IV+ VH Sbjct: 549 RWGGTSVTYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVTGMHAVAKAGHQIVMHVH 608 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DEIV + P+ F + LM++ P+WA+GLPL A+GYE YRK Sbjct: 609 DEIVIDEPENSGFTVTDACALMSTLPAWAEGLPLDADGYECAYYRK 654 >gi|212712317|ref|ZP_03320445.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM 30120] gi|212685063|gb|EEB44591.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM 30120] Length = 685 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 262/693 (37%), Positives = 378/693 (54%), Gaps = 27/693 (3%) Query: 1 MA-TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59 M TL++D ET S + K G YAE V ++LFA+ +++ V++WD +P LK+ Sbjct: 1 MKNTLWLDLETFSEKPI-KYGTHSYAETVEIMLFAWALNNNLVQVWDVTDKSPIPTELKQ 59 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK-- 117 AL + + I AHNS+F+RT+L + I + RW T+V A ++GLP AL A+ E L Sbjct: 60 ALSDPNTIIYAHNSHFDRTML-NHSGIKIDVSRWRDTMVQALAHGLPGALGALCEVLGVP 118 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 L K +EGK LI FCK R H E W+ F Y D+ RE+ KRL Sbjct: 119 LDKAKDKEGKALIQLFCKPRPKNSALRRATSKTHPEEWKRFVAYAGLDIEAMREVHKRLP 178 Query: 177 PLSSKE--QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + + E W+ DQ INDRG +D+ LA + V++E+ +L + + LT V ++ Sbjct: 179 SWNYCDNELEHWHRDQRINDRGVYMDIQLATAAIEAVEIEQKRLAKLTQDLTDNEVQAAT 238 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 + L + G+ L D+ ++T +R ++ P ++ R+++S ++ K L Sbjct: 239 QRDALLQHISAAFGVDLPDMQKSTLERRINDPDIPLPL-RELLAIRLQSSTTSTSKYKAL 297 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS-- 352 + ++SDGRLRGTLQF GASRTGRW+G +F PQNLPRP+ +D+ I L Sbjct: 298 MNGVSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPTLDQNTIDKGIEALKAGCADLI 357 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE-----D 407 D +Q+ S +R C++A EGKKLVV+DL+ IE R+LAW+AGE WK+ AF + D Sbjct: 358 YDDIMQLTSSTLRGCIMAPEGKKLVVSDLSNIEGRMLAWLAGEAWKITAFSEFDKGIGAD 417 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 LY YAR+FN++P V K R IGKVMEL LGY GG AF A T L+L+ A Sbjct: 418 LYKLAYARAFNISPEDVDKHMRQIGKVMELGLGYGGGVAAFLTFALTYSLDLDELAEAAL 477 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 N P+ DA ++ + E + + + T C+ +K+ WR H W EL Sbjct: 478 PNIPPKVKHDALSWYQKSVETKKTYGLSETVFIT-CDSLKRMWRNAHPETVSFWYELEDT 536 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS-----YLNT 582 I + ++ + +++DK L ++LPSGR++ Y N+ +N Sbjct: 537 VRHAISSPGITFPCRK-----LKVRRDKAWLRIVLPSGRAVCYPSPRNDNGQISYMGVNP 591 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 +R+ R TYGGKL EN+ QA +RD+LA M GYDIVLTVHDE++ E PD F Sbjct: 592 YSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPTIEDHGYDIVLTVHDEVLTEAPDNPAF 651 Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 N L L+ +NP WA LPL A G+E+ YRK Sbjct: 652 NHEHLSELLATNPEWALDLPLSAGGFEAYHYRK 684 >gi|297583086|ref|YP_003698866.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] gi|297141543|gb|ADH98300.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] Length = 644 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 209/697 (29%), Positives = 316/697 (45%), Gaps = 76/697 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID E+ S DL K G+ +YAE D ++LFA+ D PV + D +P V++ Sbjct: 1 MKTLNIDIESYSRTDLAKSGVYRYAEAPDFDILLFAYSVDAGPVHVVDLAQGETIPDVVR 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL + V A N+ FERT L N I W C++V + GLP +L+ Sbjct: 61 QALTDDGVIKWAFNAQFERTCLSRYLNTPIHPTSWRCSMVWSAYLGLPLSLEGAAIVTGA 120 Query: 119 SSQKMEEGKELIARFCKGET---HECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 +K++EGK+LI FCK +RN P+H E W F Y + DV + I + Sbjct: 121 DKKKLQEGKDLIRYFCKPCKPTQVNGGRERNFPHHDPEKWVAFKRYNQRDVETEQAIQDK 180 Query: 175 --LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 P+ +E + LDQ INDRG +D R L L +LT + + Sbjct: 181 ISRYPVPEQEWGHYVLDQIINDRGILLDPVFVEAAIACDTATREALMNRLRTLT--KLEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + ++K WL + G+ L + +L S + +V R + ++S+V K Sbjct: 239 PNSVMQMKDWLAEQ-GVETGALDKAAVHELLKSAQGD---VAEVLTIRQKLAKSSVKKYT 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLPTS 349 + + D R RG +QF GA+R+GR++G + QNLP+ + + + +L Sbjct: 295 AMKQVAGKDDRARGLIQFYGANRSGRYAGRLIQVQNLPQNHVPDLKEARDLVRASNLEAL 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 P ++S+ +R+ I E + +VAD + IEARV+AW+AGE W+ + F T +Y Sbjct: 355 DMLYPSVPDLLSELIRTAFIPKEHHQFIVADFSAIEARVIAWLAGEAWRNEVFATHGKIY 414 Query: 410 VTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + ++ FNV ++ K R GK+ ELALGY G A + M Sbjct: 415 EASASQMFNVPLEEIDKGSPLRQKGKISELALGYGGSVGALRAMG--------------- 459 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A++ + + +AWRQ + ++ + W + QA Sbjct: 460 -------------------------ALDMGVEEEELKPLVQAWRQANPKIVQFWWAVDQA 494 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN---- 581 ++ ++ + L++ LPSGR L Y + N Sbjct: 495 AQKAVKQRTTTSTHG------ISFTYQSGLLLVGLPSGRHLSYVKPTIVLNDFGREGLCF 548 Query: 582 ---TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 T++ R TYG KL ENIVQAVSRD+LA M + GY IV+ VHDE+V E Sbjct: 549 EGIGATKKWERIDTYGPKLVENIVQAVSRDLLAHAMQRIEQEGYAIVMHVHDEVVVEA-- 606 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 S + LMT P W+ GL LKAEGY Y+K Sbjct: 607 KQHVTVSDICALMTDQPDWSSGLNLKAEGYACMFYQK 643 >gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|254039804|gb|ACT56600.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|317120698|gb|ADV02521.1| DNA polymerase A [Liberibacter phage SC1] gi|317120741|gb|ADV02563.1| DNA polymerase A [Liberibacter phage SC2] gi|317120802|gb|ADV02623.1| DNA polymerase A [Liberibacter phage SC2] gi|317120842|gb|ADV02663.1| DNA polymerase A [Liberibacter phage SC1] Length = 675 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 402/677 (59%), Positives = 484/677 (71%), Gaps = 4/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFCKG YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL EA+ Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L T DPL Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT F+ L LMT NPSWA Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 Query: 659 KGLPLKAEGYESKRYRK 675 KGLPLKAEGYE+KRYRK Sbjct: 659 KGLPLKAEGYEAKRYRK 675 >gi|255957611|dbj|BAH96662.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957616|dbj|BAH96666.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957626|dbj|BAH96674.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957641|dbj|BAH96686.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957661|dbj|BAH96702.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957666|dbj|BAH96706.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957671|dbj|BAH96710.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957676|dbj|BAH96714.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957686|dbj|BAH96722.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 402/677 (59%), Positives = 484/677 (71%), Gaps = 4/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFCKG YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL EA+ Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L T DPL Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT F+ L LMT NPSWA Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 Query: 659 KGLPLKAEGYESKRYRK 675 KGLPLKAEGYE+KRYRK Sbjct: 659 KGLPLKAEGYEAKRYRK 675 >gi|153581904|emb|CAM34262.1| phage polymerase [Streptococcus pyogenes] gi|262113717|emb|CAR95384.1| hypothetical protein [Streptococcus phage phi-m46.1] Length = 651 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 208/705 (29%), Positives = 326/705 (46%), Gaps = 87/705 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + L ID ET IDL K G+ +YAED ++LFA D+ PV ++D + +PQ + Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYD-FNKEKLPQDIL 61 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109 EAL + V A N+ FER L P + W C+++ + GLP +L Sbjct: 62 EALVDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSL 121 Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165 + VG LKL +KM EG +LI FC K RN P+H + W F +Y + DV Sbjct: 122 EGVGTVLKLKDKKMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAPDKWSAFIDYNRRDV 181 Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V I +RL+ P+ + ++ DQ INDRG +DV +I + K+ +EL+ Sbjct: 182 EVELAIKERLKNFPVPDFVWDEYHQDQIINDRGLGIDVDFVKAAIKIDRESKAKIQEELK 241 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +LT + + + ++ WL G+ + L + + +L + + T QV R +A Sbjct: 242 ALTG--LENPNSVLQMIGWLREH-GVTTDSLDKKAVKGLLKTVDETT---AQVLKLRQQA 295 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K ++ + DGR RG QF GA+RTGRW+G + QNLP+ E + + Sbjct: 296 AKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLEEAREL 355 Query: 344 THLPTSITSD--PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 ++ D +S +R+ + S+GKK +V D + IEARVL+ +AGE+W+ K Sbjct: 356 FGTGDLEATELIYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKV 415 Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 FE G+D+Y + ++ F V + + R GK+ ELA GY G A + M Sbjct: 416 FEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMG------- 468 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A++ + + +WR + + Sbjct: 469 ---------------------------------ALDMGLTEEELQPLVNSWRLANPNIVL 495 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR 577 W ++ A + ++ + + + L + LPSGR L Y +G+N+ Sbjct: 496 YWWDVDNAVKTAVKELIPTSTHG------IQFEVKRGILFITLPSGRKLAYIKPRIGDNQ 549 Query: 578 ------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 +Y T T ++ R +YG K ENIVQA+SRDILA M + IV VHD Sbjct: 550 FGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQL--KNFKIVGHVHD 607 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + LM P W + L+A+GYE Y+K Sbjct: 608 EVIIECPIEQ--KLDEVASLMGIAPDWLSDINLRADGYECFFYQK 650 >gi|260579057|ref|ZP_05846956.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC 43734] gi|258602808|gb|EEW16086.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC 43734] Length = 653 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 217/707 (30%), Positives = 310/707 (43%), Gaps = 87/707 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M LFID ET SP++L G+ YA+ ++LF + D PVE+ D + +P+ + Sbjct: 1 MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----------IPIHRWICTLVLARSNGLPSA 108 AL + V A N+ FER L + + +W CT+V + GLP + Sbjct: 61 SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGE---THECLYDRNKPN-HREAWRLFGEYCKGD 164 L V L L +K GK+LI +FC RN P + W F Y + D Sbjct: 121 LDQVATVLHLPVRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNRRD 180 Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 V V I RL PL + E + + LDQ +ND G +D L R Sbjct: 181 VEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLARA 240 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + LT + + +LK WL G L+ LT+ V ++ T Q +V R Sbjct: 241 QELTG--LENPNSPIQLKDWL-AAHGAPLQSLTKD---EVAAALDTATGQVREVLLLRGE 294 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++S+V K + DGR RG LQF GA RTGR++G + QNLPR + Sbjct: 295 LAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLAEARS 354 Query: 343 IT---HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + +S +R+ I ++G + VVAD + IEARV+AW+AGE L Sbjct: 355 LVRTGDFEAVELLYDSVPDTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGETTTL 414 Query: 400 KAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF G+DLY T +R F V + + R GK+ LA GYQGG A + M Sbjct: 415 EAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMG----- 469 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 A+ + + + AWR + V Sbjct: 470 -----------------------------------ALRMGLAESELQPLVDAWRAANPSV 494 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGN 575 +LW +++ A +TI + + + + + LPSGR L Y +G Sbjct: 495 VQLWADINAAAIETISTRQPTSVG------ALTFTVESGIMFIRLPSGRRLAYVKPKLGE 548 Query: 576 NRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 NR + T R+ + TYGGKLTENIVQAV+RD+L M +AG+ IV+ V Sbjct: 549 NRFGGTSITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTYAMHQVAEAGHRIVMHV 608 Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 HDEIV ET + LM++ P WA GLPL+A+GY Y K Sbjct: 609 HDEIVVET---ATATVDEICKLMSTAPDWAAGLPLEADGYACDFYMK 652 >gi|255957621|dbj|BAH96670.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 401/677 (59%), Positives = 483/677 (71%), Gaps = 4/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFCKG YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL E + Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSETV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L T DPL Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT F+ L LMT NPSWA Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 Query: 659 KGLPLKAEGYESKRYRK 675 KGLPLKAEGYE+KRYRK Sbjct: 659 KGLPLKAEGYEAKRYRK 675 >gi|300933386|ref|ZP_07148642.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100] Length = 653 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 226/707 (31%), Positives = 314/707 (44%), Gaps = 87/707 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M LF+D ET SP++LTK G+ YAE D V+LF + D +PV++ D +P + Sbjct: 1 MHELFVDLETFSPVNLTKSGVYPYAEHPDFDVLLFGYSIDGNPVKVVDVASSEQLPAEVV 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----------IPIHRWICTLVLARSNGLPSA 108 EAL + VT A N+ FER L A + +W CT+V + GLP + Sbjct: 61 EALVDPGVTKWAFNAAFERVCLSAWLARHHPDLIAGRNFLDPAQWRCTMVWSAYLGLPMS 120 Query: 109 LKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPN-HREAWRLFGEYCKGD 164 L+ V L L +K GK+LI RFC + RN P + W F Y + D Sbjct: 121 LEQVATVLDLPVRKDSAGKKLITRFCTPARPSVLNQGEMRNLPASDPDGWEQFISYNRRD 180 Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 V V I RL P+ E + LDQ IND G +D L Q R Sbjct: 181 VEVELAIHDRLAGFPMPEAEWATYALDQNINDTGIRLDRVLVDHAVQCDRQHRATTLARA 240 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + LT + + +LK WL G L+ LT+ V ++ T + +V R Sbjct: 241 QELTG--LENPNSPIQLKDWLTAH-GTPLQSLTKD---EVAAALDTATGEVREVLQLRGE 294 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++S+V K T+ DGR RG LQF GA RTGR++G + QNLPR + Sbjct: 295 LAKSSVKKYETMQHVAGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLCEARD 354 Query: 343 ITHL---PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + +S +R+ + ++G + VVAD + IEARV+AW+AGE L Sbjct: 355 LVRTGEFEAVELLYDSVPDTLSQLIRTAFVPADGHRFVVADFSAIEARVIAWLAGEATTL 414 Query: 400 KAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF G+DLY T +R F V + + R GK+ LA GYQGG A + M Sbjct: 415 QAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMG----- 469 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 A+ + + + AWR + V Sbjct: 470 -----------------------------------ALRMGLAESELQPLVDAWRAANPNV 494 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGN 575 +LW +++ A + I + V + + + + LPSGR L Y +G Sbjct: 495 VQLWADINAAAIEAISTRQPT------GVGALTFTVESGIMFVRLPSGRRLAYVKPKLGE 548 Query: 576 NRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 NR T R+ + TYGGKLTENIVQAV+RD+L GM +AGY IV+ V Sbjct: 549 NRFGGTAITHEGIATGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDRAGYRIVMHV 608 Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 HDEIV ET + LM + P WA GLPL A+GY Y K Sbjct: 609 HDEIVVET---ATATVDEICELMATAPDWAAGLPLAADGYACDFYMK 652 >gi|319757792|gb|ADV69734.1| phage polymerase [Streptococcus suis JS14] Length = 651 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 207/705 (29%), Positives = 323/705 (45%), Gaps = 87/705 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + L ID ET IDL K G+ +YAED ++LFA ++ PV ++D +PQ + Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDDSFEILLFAVSVNNGPVTVYDL-SKEKLPQDIL 61 Query: 59 EALENTDVTIVAHNSYFERTVLKACF---------NLDIPIHRWICTLVLARSNGLPSAL 109 EAL + V A N+ FER L + + W C+++ + GLP +L Sbjct: 62 EALVDDRVIKWAFNASFERVCLSNWLKKYHPDLLLDRFLSPVSWRCSMIWSAYLGLPLSL 121 Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165 + VG LKL QKM EG +LI FC K RN P+H + W F +Y + DV Sbjct: 122 EGVGTVLKLKDQKMREGADLIRYFCVPCKPTKINGGRTRNLPHHAPDQWATFIDYNRRDV 181 Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V I +RL+ P+ + + DQ INDRG +DV +I + ++ +EL+ Sbjct: 182 EVELAIKERLKNFPVPDFVWDEYLQDQIINDRGIGIDVDFVKAAIKIDTESKAQIQEELK 241 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +LT + + + ++ WL G+ + L + + +L + T +V R +A Sbjct: 242 ALT--SLENPNSVLQMIGWLREH-GVTTDSLDKKAVKELLKTVDDKT---SKVLKLRQQA 295 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K ++ + DGR RG QF GA+RTGRW+G + QNLP+ E + + Sbjct: 296 AKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLEEARKL 355 Query: 344 THLPTSITSD--PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 ++ D +S +R+ + S+GKK +V D + IEARVL+ +AGE+W+ K Sbjct: 356 FKTGDLEATELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGEKWRSKV 415 Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 FE G+D+Y + ++ F V + R GK+ ELA GY G A + M Sbjct: 416 FELGKDIYCMSASQMFGVPVEKHGQNSKLRQKGKIAELACGYGGSVGALKAMG------- 468 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A++ + + +WRQ + + Sbjct: 469 ---------------------------------ALDMGLSEEELQPLVNSWRQANPNIVL 495 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR 577 LW ++ A + ++ + + L + LPSGR L Y +G N+ Sbjct: 496 LWWDVDNAVKTAVKEQIPTSTHG------IQFEVRSGILFITLPSGRKLAYIKPRIGENQ 549 Query: 578 ------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 +Y T T ++ R +YG K ENIVQA+SRDILA + + IV VHD Sbjct: 550 FGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAYSLKQL--KEFKIVGHVHD 607 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P E + LM P W + L+A+GYE Y+K Sbjct: 608 EVIIECP--MEQKIDKIASLMGIAPDWMSDINLRADGYECLFYQK 650 >gi|255957561|dbj|BAH96622.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957566|dbj|BAH96626.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957571|dbj|BAH96630.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957576|dbj|BAH96634.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957581|dbj|BAH96638.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957586|dbj|BAH96642.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957591|dbj|BAH96646.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957601|dbj|BAH96654.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957631|dbj|BAH96678.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957636|dbj|BAH96682.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957646|dbj|BAH96690.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957651|dbj|BAH96694.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957656|dbj|BAH96698.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957681|dbj|BAH96718.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 401/677 (59%), Positives = 483/677 (71%), Gaps = 4/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFC G YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL EA+ Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L T DPL Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT F+ L LMT NPSWA Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 Query: 659 KGLPLKAEGYESKRYRK 675 KGLPLKAEGYE+KRYRK Sbjct: 659 KGLPLKAEGYEAKRYRK 675 >gi|323159211|gb|EFZ45201.1| DNA-directed DNA polymerase [Escherichia coli E128010] Length = 687 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 260/692 (37%), Positives = 379/692 (54%), Gaps = 26/692 (3%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 3 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61 Query: 62 ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + + + HNS+F+RTVL+ L P+ RW T+V A ++GLP +L + E L + Sbjct: 62 ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 121 Query: 121 QK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K +EGK LI FCK R H E WR F Y D+ RE++KRL Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181 Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + + EL W+ DQ INDRG C+DV LA VD E+ +L + + +T G V ++ Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQ 241 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + L + G+ L D+ +T +R ++ L ++ R++AS ++ K L+ Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALM 300 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353 + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L Sbjct: 301 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLF 360 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDL 408 + +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF DL Sbjct: 361 DNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDL 420 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 Y YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ Sbjct: 421 YKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALP 480 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 N + +A+++ + + + + AC+ +K+ WR+ H + W EL + Sbjct: 481 NIPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTV 539 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTT 583 I + + + +++D L + LPSGR++ Y N +Y+ N+ Sbjct: 540 RTAIATPQKTL-----YCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSY 594 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 +R+ R TYGGKL ENI QA +RDILA M AGY IVLTVHDE++ E PDT++FN Sbjct: 595 SRKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFN 654 Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L L++++P WA +PL A G+E+ Y+K Sbjct: 655 DKALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686 >gi|227497454|ref|ZP_03927686.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] gi|226833079|gb|EEH65462.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] Length = 649 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 213/704 (30%), Positives = 317/704 (45%), Gaps = 85/704 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M +L +D ET SP +L G+ +YAED ++LF + D P ++ D +P + Sbjct: 1 MRSLSLDLETFSPTNLATAGVYRYAEDEAFRILLFGYSIDGAPAKVIDLARGEPIPPGIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109 +AL + VT A N+ FER + A P W CT+V A S GLP +L Sbjct: 61 QALTDPTVTKSAFNASFERVCMSAYLRRHHPDLLAEGFLGPRGWRCTMVWAASLGLPMSL 120 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 +AL+L +K G++LI RF + W+ + Y + DV V Sbjct: 121 DGAAKALRLPIEKDPAGQKLIRRFSIPGKD--GIRVLPSDDPVGWQQYISYNRRDVDVEV 178 Query: 170 EIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 ++ R P+ E E ++LDQ IND G +D LA ++ R + LT Sbjct: 179 QLASRLARNPMLEAEWETYWLDQRINDTGVRIDTQLAAHAVEVDSRHRDTCLARAQQLTG 238 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +LK WL G LE LT+T + L + +T +V R SRS+ Sbjct: 239 --LENPNSPIQLKDWL-AAHGCELESLTKTEVEAALET---VTGDVAEVLRLRQDLSRSS 292 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---T 344 V K ++ SD R RG +Q++GA RTGR++G + QNLPR + + Sbjct: 293 VKKYQAMLTVAGSDDRARGLIQYMGAGRTGRFAGRLIQVQNLPRNHMPDLASARSLLNAG 352 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 + +S +R+ I S+ + +VAD + IEARVLAW+AGE+ L+AF Sbjct: 353 NSDALELLYSPLPDTLSQLIRTAFIPSKDHRFIVADFSAIEARVLAWLAGEEGTLQAFRE 412 Query: 405 GEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461 G+DLY T +R F V + + R GK+ LA GY G A + M + GL+ + Sbjct: 413 GKDLYCQTASRMFGVPVEKHGANSELRQKGKIAVLACGYGGSVGALKAMGALRMGLDESE 472 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + AWR + V + W Sbjct: 473 L-----------------------------------------KPLVDAWRDANPMVVQFW 491 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSY 579 +++ QA T+E + +++ L + LPS R L Y +G NR Sbjct: 492 HDIEQAAITTVETRTPTQVGR------IHLSYRSGCLFIALPSRRELCYPRPRLGENRFG 545 Query: 580 LNT--------TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 + + TTR+ TYGGKLTEN+VQA +RD+L M + AG+ IV+ +HDE Sbjct: 546 MTSILFDGVDGTTRKWGPIETYGGKLTENLVQATARDLLTHAMHHVDAAGHRIVMHIHDE 605 Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV + P + + LMT P+WA GLPL A+GYE Y K Sbjct: 606 IVVDEPTDGA-SVEDIVTLMTRLPTWADGLPLDADGYECGFYMK 648 >gi|255957596|dbj|BAH96650.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957606|dbj|BAH96658.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 400/677 (59%), Positives = 482/677 (71%), Gaps = 4/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFC G YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL EA+ Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L T DPL Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPD F+ L LMT NPSWA Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDIPYFSVGTLCSLMTKNPSWA 658 Query: 659 KGLPLKAEGYESKRYRK 675 KGLPLKAEGYE+KRYRK Sbjct: 659 KGLPLKAEGYEAKRYRK 675 >gi|332522757|ref|ZP_08399009.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova 176] gi|332314021|gb|EGJ27006.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova 176] Length = 653 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 204/706 (28%), Positives = 321/706 (45%), Gaps = 87/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCV-HDPVMPQVL 57 + L ID ET IDL K G+ +YAED ++LFA D+ PV ++D +PQ + Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDESFELLLFAVSVDNGPVTVYDLDLTKEKLPQDI 62 Query: 58 KEALENTDVTIVAHNSYFERTVLKACF---------NLDIPIHRWICTLVLARSNGLPSA 108 E L + V A N+ FER L + + W C+++ + GLP + Sbjct: 63 LETLVDNSVIKWAFNASFERICLSNWLKKYHPDLLLDGFLSPVSWRCSMIWSAYLGLPLS 122 Query: 109 LKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGD 164 L+ VG LKL QKM EG +LI FC K RN P+H W F +Y + D Sbjct: 123 LEGVGTVLKLKDQKMREGADLIRYFCLPCKPTKVNGGRIRNFPHHASNKWSTFIDYNRRD 182 Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 V V I +R++ P+ S ++ DQ IND G +DV +I + K+ EL Sbjct: 183 VEVELAIKERVKNFPVPSFVWNEYHQDQIINDHGIGIDVDFVKAALKIDGESKAKIQAEL 242 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 ++LT + + + ++ +WL G+ + L + + +L + + T QV R + Sbjct: 243 KALTG--LENPNSVLQMISWLREH-GVATDSLDKNAVKELLKTVDETT---AQVLKLRQQ 296 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A++S+V K ++ + DGR RG QF GA+RTGRW+G + QNLP+ + + Sbjct: 297 AAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEARD 356 Query: 343 ITHLPTSITSD--PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + +++ D +S +R+ + S+GKK +V D + IEARVL+ +AGE+W+ K Sbjct: 357 LFRTGDLESTELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSK 416 Query: 401 AFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 FE G+D+Y + ++ F V + + R GK+ ELA GY G A + M Sbjct: 417 VFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMG------ 470 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A++ + + +WR + + Sbjct: 471 ----------------------------------ALDMGLSKEELQPLVNSWRLANPNIV 496 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 W ++ A + ++ + + L + LPSGR L Y +G+N Sbjct: 497 LYWWDVDNAVKTAVKELIPTSTHG------IQFEVKSGILFITLPSGRKLAYIKPRIGDN 550 Query: 577 RSYLNT-------TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 + + T ++ R +YG K ENIVQA+SRDILA M + IV VH Sbjct: 551 QFGGESVTYEGSGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQL--KDFRIVGHVH 608 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DEI+ E + N + LM P W + L+A+GYE Y+K Sbjct: 609 DEIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECFFYQK 652 >gi|255957556|dbj|BAH96618.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 400/677 (59%), Positives = 482/677 (71%), Gaps = 4/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFC G YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL EA+ Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L T DPL Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT F+ L LMT NPSWA Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 Query: 659 KGLPLKAEGYESKRYRK 675 KG PLKAEGYE+KRYRK Sbjct: 659 KGFPLKAEGYEAKRYRK 675 >gi|291283829|ref|YP_003500647.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains [Escherichia coli O55:H7 str. CB9615] gi|290763702|gb|ADD57663.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains [Escherichia coli O55:H7 str. CB9615] Length = 687 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 259/692 (37%), Positives = 380/692 (54%), Gaps = 26/692 (3%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 3 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61 Query: 62 ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + + + HNS+F+RTVL+ L P+ RW T+V A ++GLP +L + E L + Sbjct: 62 ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQ 121 Query: 121 QKME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K + EGK LI FCK R H E WR F Y D+ RE++KRL Sbjct: 122 DKAKNKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181 Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + + EL W+ DQ INDRG C+D+ LA + VD E+ +L + + +T G V ++ Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 241 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + L + G+ L D+ +T +R ++ L ++ R++AS ++ K L+ Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIAD-PHLPSAVKELLAIRLQASTTSTSKYKALM 300 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT--SD 353 + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L Sbjct: 301 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCAGLLF 360 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDL 408 + +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF DL Sbjct: 361 DNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDL 420 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 Y YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ Sbjct: 421 YKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALP 480 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 N + +A+++ ++ + + AC+ +K+ WR+ H + W EL + Sbjct: 481 NIPRDVIREAKSWYNESVKHKSTFGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTV 539 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTT 583 I + + + +++D L + LPSGR++ Y N +Y+ N+ Sbjct: 540 RTAIATPQKTL-----YCGYLKIRRDGAWLRIQLPSGRAVCYPSPIIEKGNITYMGVNSY 594 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 +R+ R TYGGKL EN+ QA +RD+LA M AGY IVLTVHDE++ E PDT++FN Sbjct: 595 SRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFN 654 Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L L+++NP WA +PL A G+E+ YRK Sbjct: 655 DKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|315121967|ref|YP_004062456.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495369|gb|ADR51968.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 673 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 398/677 (58%), Positives = 487/677 (71%), Gaps = 6/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M LFID ETRSP L K G+ YAE+ + L A+ +D ++LWDC +PVMP L + Sbjct: 1 MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L++ V VAHNS FER + K N+ IP RWICT LAR NGLP++LK ALK Sbjct: 61 LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFCKG E YD + NH +AW+LFGEYCK DV TRE++KRL PL Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E+ LW LDQ INDRGY +D+ L L +++ ER KLD+EL++LT+G++ SSR + Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFEREKLDEELKTLTFGVIGSSRKTDL 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L +LFL GL L D+ E+T LS +T +A + NNR+ +S+SA+LKLNTL A+ Sbjct: 241 LNKYLFLYMGLDLPDMAESTIATALSQ-PNITQRAKDILNNRLSSSQSAILKLNTLSGAV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 + D RLRGTLQF GASRTGRWSGCVF PQNLPRP+ SHE +++ I DPL+ Sbjct: 300 SPDLRLRGTLQFYGASRTGRWSGCVFQPQNLPRPNTSHETIEEAIESSNFPS---DDPLR 356 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGEQWKL AF GED+Y T Y+++FN Sbjct: 357 FASDCVRSCIIASTGKKLVVADLAGIEARVLAWIAGEQWKLNAFANGEDIYKTAYSKAFN 416 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 + + VTKDQRAIGKVMELALGYQGGA+ FQ MAS GL+L F+ +K + ++WE A Sbjct: 417 IPLSNVTKDQRAIGKVMELALGYQGGARVFQTMASNLGLDLKQFSKSIKQTATGDDWEQA 476 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 + C WMQE +PE A+ D FIGTACE VK AWR KH V +LW + +AF+ I++G++I Sbjct: 477 QRRCLWMQETYPEFAVHDPFIGTACELVKTAWRAKHKGVVQLWKDCEEAFDCVIKDGRSI 536 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ VP + MKK N+ + LPS R LVYRDV ++RSYLNT T Q+ RE TYGGKLT Sbjct: 537 SARRVAGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLT 596 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDILA GM+NAT+AGYDIVLTVHDEIVCETPDT EF++ L LMT NP WA Sbjct: 597 ENIVQAISRDILACGMINATRAGYDIVLTVHDEIVCETPDTPEFSSDELCFLMTQNPKWA 656 Query: 659 KGLPLKAEGYESKRYRK 675 KGLPLKAEGYE+ RYRK Sbjct: 657 KGLPLKAEGYEALRYRK 673 >gi|50914501|ref|YP_060473.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] gi|40218547|gb|AAR83201.1| phage polymerase [Streptococcus pyogenes] gi|50261592|gb|AAT72360.1| DNA polymerase [Streptococcus pyogenes] gi|50903575|gb|AAT87290.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] Length = 651 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 208/705 (29%), Positives = 322/705 (45%), Gaps = 87/705 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + L ID ET IDL K G+ +YAED ++L A D+ PV ++D + +PQ + Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLIAVSVDNGPVTVYD-FNKEKLPQDIL 61 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109 EAL V A N+ FER L P W C+++ + GLP +L Sbjct: 62 EALVEDRVIKWAFNASFERICLSNWLKKHHPEFLSDGFLSPVSWRCSMIWSAYLGLPLSL 121 Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165 + VG LKL QKM EG +LI FC K RN P+H W F +Y + DV Sbjct: 122 EGVGTVLKLKDQKMREGADLIRYFCLPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRRDV 181 Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V I +R++ P+ S ++ DQ INDRG +DV +I + K+ EL+ Sbjct: 182 EVELAIKERVKNFPVPSFVWNEYHQDQIINDRGIGIDVDFVKAALKIDGESKAKIQAELK 241 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +LT + + ++ +WL G+ + L + + +L + + T QV R +A Sbjct: 242 TLTG--LEKPNSVLQMISWLREH-GVATDSLDKKAVKELLKTVDETT---AQVLKLRQQA 295 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K ++ + DGR RG QF GA+RTGRW+G + QNLP+ + + + Sbjct: 296 AKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEAREL 355 Query: 344 THLPTSITSD--PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +++ D +S +R+ + S+GKK +V D + IEARVL+ +AGE+W+ K Sbjct: 356 FRTGDLESTELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKV 415 Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 FE G+D+Y + ++ F V + + R GK+ ELA GY G A + M Sbjct: 416 FEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMG------- 468 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A++ + + +WRQ + + Sbjct: 469 ---------------------------------ALDMGLSEEELQPLVNSWRQANPNIVL 495 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR 577 W ++ A + ++ + + + L + LPSGR L Y +G N+ Sbjct: 496 YWWDVDNAVKTAVKELLPTSTQ------NIQFEVKSGILFITLPSGRKLAYIKPRIGENQ 549 Query: 578 ------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 +Y T T ++ R +YG K ENIVQA+SRDILA M + IV VHD Sbjct: 550 FGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQLND--FKIVGHVHD 607 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + LM P W + L+A+GYE Y+K Sbjct: 608 EVIIECPIEQ--KLDEVASLMGIAPYWLSDINLRADGYECFFYQK 650 >gi|218555134|ref|YP_002388047.1| putative DNA polymerase from bacteriophage origin [Escherichia coli IAI1] gi|218361902|emb|CAQ99502.1| putative DNA polymerase from bacteriophage origin [Escherichia coli IAI1] Length = 687 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 260/692 (37%), Positives = 379/692 (54%), Gaps = 26/692 (3%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 3 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGVGIPHGLYEAI 61 Query: 62 ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + + + HNS+F+RTVL+ L P+ RW T+V A ++GLP +L + E L + Sbjct: 62 ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 121 Query: 121 QK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K +EGK LI FCK R H E WR F Y D+ RE++KRL Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181 Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + + EL W+ DQ INDRG C+DV LA VD E+ +L + + +T G V ++ Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQ 241 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + L + G+ L D+ +T +R ++ L ++ R++AS ++ K L+ Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALM 300 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353 + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L Sbjct: 301 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLF 360 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDL 408 + +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF DL Sbjct: 361 DNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDL 420 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 Y YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ Sbjct: 421 YKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALP 480 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 N + +A+++ + + + + AC+ +K+ WR+ H + W EL + Sbjct: 481 NIPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTV 539 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTT 583 I + + + +++D L + LPSGR++ Y N +Y+ N+ Sbjct: 540 RTAIATPQKTL-----YCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSY 594 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 +R+ R TYGGKL ENI QA +RDILA M AGY IVLTVHDE++ E PDT++FN Sbjct: 595 SRKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFN 654 Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L L++++P WA +PL A G+E+ Y+K Sbjct: 655 DKALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686 >gi|260161774|emb|CAZ39318.1| phage polymerase [Streptococcus suis] gi|313575356|emb|CBR26885.1| hypothetical protein [Streptococcus phage phi-SsUD.1] Length = 651 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 209/705 (29%), Positives = 330/705 (46%), Gaps = 87/705 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + L ID ET IDL K G+ +YAED ++LFA D+ PV ++D + +PQ + Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYD-FNKEKLPQDIL 61 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109 EAL + V A N+ FER L P + W C+++ + GLP +L Sbjct: 62 EALVDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSL 121 Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165 + VG LKL +KM EG +LI FC K RN P+H W F +Y + DV Sbjct: 122 EGVGTVLKLKDKKMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRRDV 181 Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V I +RL+ P+ + ++ DQ INDRG +D+ +I + K+ +EL+ Sbjct: 182 EVELAIKERLKNFPVPDFVWDEYHQDQIINDRGIGIDIDFVKAAIKIDSESKAKIQEELK 241 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +LT + + + ++ WL G+ + L + + +L + + T QV R +A Sbjct: 242 ALT--RLENPNSVLQMIGWLREH-GVTTDSLDKKVVKELLKTADETT---AQVLKLRQQA 295 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K ++ + DGR RG QF GA+RTGRW+G + QNLP+ E + + Sbjct: 296 AKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLEEAREL 355 Query: 344 THLPTSITSDP--DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 ++ D +S +R+ + S+GKK +V D + IEARVL+ +AGE+W+ K Sbjct: 356 FGTGDLEATEFLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKV 415 Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 FE G+D+Y + ++ F V + + R GK+ ELA GY G A + M Sbjct: 416 FEQGKDIYCISASQMFGVPVEKYGQNSELRQKGKIAELACGYGGSVGALKAMG------- 468 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A++ + +WRQ + + Sbjct: 469 ---------------------------------ALDMGLKDKELRPLVDSWRQANPNIVL 495 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR 577 W ++ +A + I+ + + +K L + LPSGR L Y +G N+ Sbjct: 496 FWWDVDRAVKTAIKQHIQTETHG------IQFEVNKGMLSITLPSGRKLAYVKPKIGENQ 549 Query: 578 ------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 +Y T T ++ R +YG K ENIVQA+SRDILA M + ++IV VHD Sbjct: 550 FGGESITYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFAMKQLQE--FNIVGHVHD 607 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E + + + +LM P W + L+A+GYE Y+K Sbjct: 608 EVIIEC--GIDQSLDEIAYLMGIAPEWMTDIKLRADGYECSFYQK 650 >gi|258646421|ref|ZP_05733890.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470] gi|260403824|gb|EEW97371.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470] Length = 656 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 199/701 (28%), Positives = 299/701 (42%), Gaps = 72/701 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +D+ K G+ KY E ++LFA+ +D V + D +P + Sbjct: 1 MKHLSIDIETFSDVDIKKSGLFKYCESPVFELLLFAYAYDFGDVHVVDLAQGEKIPDSVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L N +V A+N+ FE T L +W CT++ G P+ L +G AL + Sbjct: 61 SDLNNPEVIKHAYNASFEITGLNRY-GYATSPEQWRCTMLHGLYLGYPAGLAFLGAALGI 119 Query: 119 SSQK--MEEGKELIARFC---KGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTREIF 172 K + GK LI FC K RN P H W LF EY DV E + Sbjct: 120 PEDKRKLSTGKALIRYFCVPCKPTKRNGGRTRNLPKHDIDKWHLFKEYNAQDVVTEMEDY 179 Query: 173 KR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +R P+ Q+ W +D +N RG +D+ L I D +T+L ++ +T Sbjct: 180 RRLSAYPVPGWVQDDWVIDYELNRRGIQLDMDLVRGALAIDDQHKTELVEKAIQITGLT- 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L TW+ + L LE LT+ T L + +V + R ++S++ K Sbjct: 239 -NPNSRNQLLTWINDNSDLKLEKLTKETVAESLQIAEDQ---VAEVLHIRRALAKSSISK 294 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ A+ +DGR+RG LQF GA+RTGRW+G + QNLP + + + Sbjct: 295 YESMKNAVCADGRIRGVLQFYGANRTGRWAGRLVQVQNLPHDVPVAMDTAIRLVKNGNAR 354 Query: 351 ---TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +S +R+ +A EG L V+D + IEARVL+W+A E+W+ F G D Sbjct: 355 GVKLMYGHISTSLSHLIRAAFVAPEGSLLCVSDFSAIEARVLSWLADEKWRQDVFAKGGD 414 Query: 408 LYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 +Y + + F V + R GKV ELALGYQGG A M + Sbjct: 415 IYCASASSMFGVPVEKHGINGHLRQKGKVAELALGYQGGPPALITMGALKQ--------- 465 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + WR + R+ W ++ Sbjct: 466 -------------------------------GLTEDELPDIVHRWRGANPRICGFWYDVD 494 Query: 526 QAFEQTIENGKAIIARKRRDV-PLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRS---- 578 A + + + + + + + L + LPSGR L Y + N+ Sbjct: 495 GAALSVMSDARPVGLPHGILISRECNLLYGYDYLTIRLPSGRKLYYPQPYINENQFGKPA 554 Query: 579 --YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 Y + + TYGGKL ENI QA++RD LA + KAGY ++ +HDE+V E Sbjct: 555 LHYRVQAGIKWSHTSTYGGKLVENITQAIARDCLALAINRLVKAGYKPLMHIHDEVVLEV 614 Query: 637 PDT--DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P E + +M + WA GL L A+G+ S Y K Sbjct: 615 PKDKIHEDEIDRINQIMCAPIPWAPGLLLNADGFISPYYTK 655 >gi|300933484|ref|ZP_07148740.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100] Length = 653 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 218/707 (30%), Positives = 307/707 (43%), Gaps = 87/707 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M LFID ET SP++L G+ YA+ ++LF + D PVE+ D + +P+ + Sbjct: 1 MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----------IPIHRWICTLVLARSNGLPSA 108 AL + V A N+ FER L + + +W CT+V + GLP + Sbjct: 61 SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGE---THECLYDRNKPN-HREAWRLFGEYCKGD 164 L V L L +K GK+LI +FC RN P + W F Y + D Sbjct: 121 LDQVATVLHLPVRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNRRD 180 Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 V V I RL PL + E + + LDQ +ND G +D L R Sbjct: 181 VEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLARA 240 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + LT + + +LK WL G L+ LT+ V ++ T Q +V R Sbjct: 241 QELTG--LENPNSPIQLKDWL-AAHGAPLQSLTKD---EVAAALDTATGQVREVLLLRGE 294 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++S+V K + DGR RG LQF GA RTGR++G + QNLPR + Sbjct: 295 LAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLAEARS 354 Query: 343 IT---HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + + +S +R+ I ++G + VVAD + IEARV+AW+AGE L Sbjct: 355 LVRTGNYDAVELLYDSVPDTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGEATTL 414 Query: 400 KAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF G+DLY T +R F V + + R GK+ LA GYQGG A + M Sbjct: 415 EAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMG----- 469 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 A+ + + + AWR + V Sbjct: 470 -----------------------------------ALRMGLAESELQPLVDAWRAANPNV 494 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGN 575 +LW +++ A + I + + + + LPSGR L Y +G Sbjct: 495 VQLWADINAAAIEAISTRLPTSVG------ALTFTVESGIMFIRLPSGRRLAYVKPKLGE 548 Query: 576 NRSYLN-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 NR TT R+ + TYGGKLTENIVQAV+RD+L GM +AG+ IV+ V Sbjct: 549 NRFGGTAITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDRAGHRIVMHV 608 Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 HDEIV ET + LM P WA GLPL A+GY Y K Sbjct: 609 HDEIVVET---ATATVDEICKLMAITPDWAAGLPLAADGYACDFYMK 652 >gi|77412069|ref|ZP_00788395.1| DNA polymerase, putative [Streptococcus agalactiae CJB111] gi|77161874|gb|EAO72859.1| DNA polymerase, putative [Streptococcus agalactiae CJB111] Length = 651 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 206/705 (29%), Positives = 314/705 (44%), Gaps = 87/705 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + L ID ET +DL K G+ YAED ++L A D+ PV ++D +P + Sbjct: 3 IKELSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLT-KENLPDQIL 61 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109 +AL N + A N+ FER L P + W C++V + GLP +L Sbjct: 62 QALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSIVWSAYLGLPLSL 121 Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165 + VG LKL QK++EG ++I FC K RN P+H + W F Y K DV Sbjct: 122 EGVGTVLKLKEQKLKEGGDVIRYFCLPYKPTKINGGRKRNFPHHAPDKWAAFINYNKRDV 181 Query: 166 TVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V I +L P+ E ++ DQ IND G +DV I + ++K+ +EL+ Sbjct: 182 EVELAIKNKLRNHPVPDFLWEEYHQDQNINDSGIGIDVDFVKAAITIDEESKSKIQEELK 241 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 LT + + + ++ WL G+ L + + +L T +V R +A Sbjct: 242 ELTG--LENPNSVLQMIGWLREH-GVTTNSLDKKAVKELLKVVDAKT---TKVLKLRQQA 295 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K +V + DGR RG QF GA+RTGRW+G + QNLP+ + + + Sbjct: 296 AKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLKEARDL 355 Query: 344 THLPTSITSD--PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +D +S +R+ + S+GKK +V D + IEARVL+ +AGE+W+ Sbjct: 356 FKTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSMV 415 Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 FE G+D+Y + ++ F V + D R GK+ ELA GY G A + M + Sbjct: 416 FEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMGAI----- 470 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + +WRQ + + Sbjct: 471 -----------------------------------DMGLDEQELQPLVDSWRQANPNIVL 495 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV------ 573 W ++ +A + I+ K + K K L + LPSGR L Y Sbjct: 496 FWWDVDKAVKTAIKYQKQTETHG------IQFKVRKGMLFITLPSGRKLAYVKPKMGENQ 549 Query: 574 --GNNRSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 G + +Y T T ++ R +YG K ENI+QA+SRDILA M + IV VHD Sbjct: 550 FGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQL--KDFRIVGHVHD 607 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 EI+ E + N + LM P W + L+A+GYE Y+K Sbjct: 608 EIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650 >gi|191173996|ref|ZP_03035513.1| DNA polymerase [Escherichia coli F11] gi|190905687|gb|EDV65309.1| DNA polymerase [Escherichia coli F11] gi|324014350|gb|EGB83569.1| hypothetical protein HMPREF9533_01582 [Escherichia coli MS 60-1] Length = 687 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 259/692 (37%), Positives = 378/692 (54%), Gaps = 26/692 (3%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 3 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDEPVNVWDITAGGGIPHGLYEAI 61 Query: 62 ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + + HNS+F+RTVL+ L P+ RW T+V A ++GLP +L + E L + Sbjct: 62 AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 121 Query: 121 QK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K +EGK LI FCK R H E WR F Y D+ RE++KRL Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181 Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + + EL W+ DQ INDRG C+D+ LA + VD E+ +L + + +T G V ++ Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 241 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + L + G+ L D+ +T +R ++ L ++ R++AS ++ K L+ Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALM 300 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353 + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L Sbjct: 301 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLF 360 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDL 408 + +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF DL Sbjct: 361 DNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDL 420 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 Y YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ Sbjct: 421 YKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALP 480 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 N + +A+++ + + + AC+ +K+ WR+ H + W EL + Sbjct: 481 NIPRDVIREAKSWYNESVKRKSTFGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTV 539 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTT 583 I + + + +++D L + LPSGR++ Y N +Y+ N+ Sbjct: 540 RTAIATPQKTL-----YCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSY 594 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 +R+ R TYGGKL EN+ QA +RD+LA M AGY IVLTVHDE++ E PDT++FN Sbjct: 595 SRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFN 654 Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L L+++NP WA +PL A G+E+ YRK Sbjct: 655 DKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|257088833|ref|ZP_05583194.1| DNA polymerase [Enterococcus faecalis CH188] gi|256997645|gb|EEU84165.1| DNA polymerase [Enterococcus faecalis CH188] gi|315160597|gb|EFU04614.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645] gi|315579443|gb|EFU91634.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630] Length = 653 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 229/703 (32%), Positives = 324/703 (46%), Gaps = 79/703 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S DLTK G+ KYA+ + ++LFA+ D PVE D +P + Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISE-IPDEIV 59 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 AL + +V +A N+ FER L + + +W CT+V A GLP++L + L Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 + QK G +LI F CK + RN P H E W+ F EYC DV V I Sbjct: 120 NIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMAIA 179 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +L P+ E +L+ LDQ INDRG +D LA I+ E++ LT + Sbjct: 180 NKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKELTG--L 237 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + L +LK WL E G E L + + L+ L +V R+ S S+ K Sbjct: 238 ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALA-LGNLPENVAEVLKLRLSLSNSSTKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + A SD R+ G LQF GA+RTGRW+G + QNLPR S + + + Sbjct: 296 YLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDVE 355 Query: 351 TS---DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 D + +R+ ++A EG + +V+D + IEARV+AW A + W L+ F T Sbjct: 356 GIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHGK 415 Query: 408 LYVTTYARSFNV-------APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 +Y T A+ F++ + KD R GKV LALGYQGG A + M Sbjct: 416 IYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG-------- 467 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A+E+ + + WR + R+ Sbjct: 468 --------------------------------ALENGIEEHELQDIVDRWRTANKRIKNF 495 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR--- 577 W+E +A ++NG ++ + K L + LPSGR L Y + Sbjct: 496 WHETQKAVIDCLQNG-----GIKKGPRGLKFYKKAGFLFIQLPSGRKLAYAKAHLEQGDY 550 Query: 578 ----SYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 Y + T + TYGGKL ENIVQA +RD+LAE M+ KAGY IV VHDE Sbjct: 551 GPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAGYPIVFHVHDEA 610 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V E P+ + + + +M+ P WA+GLPL AEG+E+K Y K Sbjct: 611 VAEVPEGE-KSIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652 >gi|320530602|ref|ZP_08031654.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] gi|320137129|gb|EFW29059.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] Length = 653 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 215/701 (30%), Positives = 330/701 (47%), Gaps = 78/701 (11%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L ID ET S +D+ G +YAE+ ++LFA+ +DD PV++ D + +P + AL Sbjct: 2 ILSIDLETYSALDIKTVGGYRYAENAEILLFAYAWDDTPVQIVDLTAEETIPADVLSALT 61 Query: 63 NTDVTIVAHNSYFERTVLKACFNLD------IPIHRWICTLVLARSNGLPSALKAVGEAL 116 + D+ A N+ FERTVL + + + W CT+V A + GLP +L V + L Sbjct: 62 DNDIMKCAFNAQFERTVLSHYLHKEGEPFAFLDPAGWSCTMVHALTLGLPGSLAEVSKTL 121 Query: 117 KLSS--QKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTRE 170 KL +KM G +LI F CK RN P + E W F YC DV RE Sbjct: 122 KLGEEKEKMSVGTQLITYFCKPCKPTKSNGGRTRNLPNDAPEKWATFKAYCVRDVEAERE 181 Query: 171 IFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + +RL P+ E+ LW LDQ INDRG +D LA R ++ E +L+ Sbjct: 182 VRRRLSGYPVPETERALWALDQRINDRGVRIDEILAQNAIAFDSAFRAEVTAEASALSG- 240 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + E+LK W++ + G LT+ T ++ + K T + +M S+++V Sbjct: 241 -LENPNSGEQLKHWIYEQEGARPLSLTKETIPELIETAKSET--VKTMLQLKMLLSKTSV 297 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---TH 345 K +V+A SDGR G LQF GA+RTGRW+G + QNLPR + + + + + Sbjct: 298 KKYEAMVQAQCSDGRAHGLLQFYGANRTGRWAGRLVQVQNLPRNTMAELDDARALLRCGD 357 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +P ++S +R+ I + G + VAD + IEARV+AW+AGE+W++ F G Sbjct: 358 TDALEMLFDNPPDVLSQLIRTAFIPAVGMRFTVADFSAIEARVIAWLAGEKWRMDVFADG 417 Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+Y + ++ F+V + R GKV ELALGY GG A ++M + Sbjct: 418 GDIYCASASKMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVSALKRMGADK-------- 469 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 E +K++WR+ R+ LW++ Sbjct: 470 --------------------------------LGLTDAELEEIKQSWRKASPRIVRLWSD 497 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN------- 576 A + + + + + ++ L + LPSGRSL Y Sbjct: 498 FESAALEAVRERSTVSLQ-----HGIKLECRSGILFIRLPSGRSLAYVKPRIEYEESFDR 552 Query: 577 --RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 +Y ++ TYGG+L EN +QA++RD LA M AGY IV+ +HDE+V Sbjct: 553 EGLTYYGRDVGGWGKQRTYGGRLVENAIQAIARDCLAVAMTRLEAAGYPIVMHIHDEVVV 612 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ETP + + + +M+ WA GL L A+GY + Y+K Sbjct: 613 ETPRS-VDCLADVCEIMSKPVDWAPGLVLTADGYTTNYYKK 652 >gi|331648300|ref|ZP_08349389.1| putative DNA polymerase (P45) [Escherichia coli M605] gi|331042849|gb|EGI14990.1| putative DNA polymerase (P45) [Escherichia coli M605] Length = 687 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 258/692 (37%), Positives = 380/692 (54%), Gaps = 26/692 (3%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 3 NILWGDLETYCDIPINN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61 Query: 62 ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + + + HNS+F+RTVL+ L P+ RW T+V A ++GLP +L + E L + Sbjct: 62 ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQ 121 Query: 121 QK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K +EGK LI FCK R H E WR F Y D+ RE+ KRL Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVCKRLPK 181 Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + + EL W+ DQ INDRG C+D+ LA + VD E+ +L + + +T G V ++ Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 241 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + L + G+ L D+ +T +R ++ L ++ R++AS ++ K L+ Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALM 300 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353 + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L Sbjct: 301 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLF 360 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDL 408 + +++ S +R C+IA GKK+VV+DL+ IE R+LAW+AGE+WKL AF DL Sbjct: 361 DNIMELTSSALRGCIIAPTGKKMVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDL 420 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 Y YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ Sbjct: 421 YKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALP 480 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 N + +A+++ + + + + AC+ +K+ WR+ H + W EL + Sbjct: 481 NIPRDVIREAKSWYGESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTV 539 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTT 583 I + + + +++D L + LPSGR++ Y N +Y+ N+ Sbjct: 540 RTAIATPQKTL-----YCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSY 594 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 +R+ R TYGGKL EN+ QA +RD+LA M AGY IVLTVHDE++ E+PDT++FN Sbjct: 595 SRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFN 654 Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L L+++NP WA +PL A G+E+ YRK Sbjct: 655 DKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|293400006|ref|ZP_06644152.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306406|gb|EFE47649.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 651 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 213/697 (30%), Positives = 325/697 (46%), Gaps = 78/697 (11%) Query: 9 ETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDV 66 ET S +DL CG+ KY +ED ++LFA+ DD PV++ D +P + + ++ + Sbjct: 2 ETYSSVDLISCGVYKYVESEDFEILLFAYAVDDEPVKVVDLACGEKIPSEVLDLIDEPAI 61 Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL--SSQKME 124 AHN+ FER L + +W C+++ A GLP++LK VG L L QKM Sbjct: 62 IKYAHNAVFERLCLSRYLGTQLDTDQWHCSMIHAMMLGLPASLKDVGAVLGLSEDKQKMR 121 Query: 125 EGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLE--PL 178 GK LI+ F CK RN P + E W+LF +YC DV REI +L+ P+ Sbjct: 122 IGKTLISYFCKPCKPTRVNGQRSRNTPADAPEKWQLFKDYCHRDVETEREISNKLDKFPI 181 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E ELW DQ +ND G +D+ + HT+ +L E E +T G + + + Sbjct: 182 PASEHELWCWDQKMNDHGARIDMEMVHTVLVFGHRYDEELINECERITNG--IGPKKIAQ 239 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LK W+ + +E L + +L ++P+ +V R + ++++ K + ++ Sbjct: 240 LKEWICRKEDRSIESLDKDAVIELLKD-SSISPETRRVLQIRQESGKTSITKYAAIQRSV 298 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD---PD 355 +D RL G LQF GA+RTGRW+G +F PQNLPR + + EL + + + D Sbjct: 299 CNDQRLHGFLQFYGANRTGRWAGRIFQPQNLPRNAFNDIELARKLVKEKDFESLDMLYGS 358 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 Q+ S +R+ VI G +AD + IEAR+ AW E+W+ + F T +Y + A+ Sbjct: 359 YNQVFSTLIRTAVIPPNGHMFAIADYSAIEARLTAWFCNEEWRQEVFATTGKIYEASAAQ 418 Query: 416 SFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 F+V VTK D R GKV ELALGY GG A ++M Sbjct: 419 MFHVPIESVTKGSDLRKKGKVAELALGYGGGVSALERMG--------------------- 457 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + WR + ++W + A + Sbjct: 458 -------------------GADMGLSEDEMQDIVNKWRLASPNIKKMWYRVQDAAYTAVR 498 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV-------GNNRSYLNTT--- 583 K + V V L LPSGR L Y G+ +Y Sbjct: 499 ERK-----RVSVVHGVRYFYSSGILFAELPSGRRLAYVRPKLKKGRYGDELTYEGYGSDQ 553 Query: 584 ----TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP-D 638 T++ R+ T+GGKL EN++QA++RD LA+ M+ GY I++ +HDE+V E P + Sbjct: 554 DGKQTKKWCRQKTWGGKLFENLIQAIARDCLAKAMLKLDDVGYKIIMHIHDEVVVEVPSE 613 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 T E + +M WA GL L A+G+ S+ YRK Sbjct: 614 TAESCLIDIERIMGEPIPWAPGLILTADGFISEYYRK 650 >gi|194429286|ref|ZP_03061813.1| DNA polymerase [Escherichia coli B171] gi|194412694|gb|EDX28989.1| DNA polymerase [Escherichia coli B171] Length = 687 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 259/692 (37%), Positives = 379/692 (54%), Gaps = 26/692 (3%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 3 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61 Query: 62 ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + + + HNS+F+RTVL+ L P+ RW T+V A ++GLP +L + E L + Sbjct: 62 ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 121 Query: 121 QK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K +EGK LI FCK R H E WR F Y D+ RE++KRL Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181 Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + + EL W+ DQ INDRG C+DV LA VD E+ +L + + +T G V ++ Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQ 241 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + L + G+ L D+ +T +R ++ L ++ R++AS ++ K L+ Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALM 300 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353 + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L Sbjct: 301 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLF 360 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDL 408 + +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF DL Sbjct: 361 DNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDL 420 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 Y YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ Sbjct: 421 YKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALP 480 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 N + +A+++ + + + + AC+ +K+ WR+ H + W EL + Sbjct: 481 NIPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTV 539 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTT 583 I + + + +++D L + LPSGR++ Y N +Y+ N+ Sbjct: 540 RTAIATPQKTL-----YCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSY 594 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 +R+ R TYGGKL ENI QA +RDILA M AGY IVLTVH+E++ E PDT++FN Sbjct: 595 SRKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHNEVITEAPDTEDFN 654 Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L L++++P WA +PL A G+E+ Y+K Sbjct: 655 DKALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686 >gi|331654014|ref|ZP_08355015.1| putative DNA polymerase (P45) [Escherichia coli M718] gi|331048863|gb|EGI20939.1| putative DNA polymerase (P45) [Escherichia coli M718] Length = 687 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 260/692 (37%), Positives = 378/692 (54%), Gaps = 26/692 (3%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 3 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61 Query: 62 ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + + HNS+F+RTVL+ L P+ RW T+V A ++GLP +L + E L + Sbjct: 62 AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 121 Query: 121 QK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K +EGK LI FCK R H E WR F Y D+ RE++KRL Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181 Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + + EL W+ DQ INDRG C+DV LA VD E+ +L + + +T G V ++ Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQ 241 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + L + G+ L D+ +T +R ++ L ++ R++AS ++ K L+ Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALM 300 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353 + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L Sbjct: 301 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLF 360 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDL 408 + +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF DL Sbjct: 361 DNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDL 420 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 Y YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ Sbjct: 421 YKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALP 480 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 N + +A+++ + + + + AC+ +K+ WR+ H + W EL Sbjct: 481 NIPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELECTV 539 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTT 583 I + + + +++D L + LPSGR++ Y N +Y+ N+ Sbjct: 540 RTAIATPQKTL-----YCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSY 594 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 +R+ R TYGGKL EN+ QA +RD+LA M AGY IVLTVHDE++ E+PDT++FN Sbjct: 595 SRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFN 654 Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L L+++NP WA +PL A G+E+ YRK Sbjct: 655 DKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|325690425|gb|EGD32428.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus sanguinis SK115] Length = 645 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 217/698 (31%), Positives = 326/698 (46%), Gaps = 77/698 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DLTKCG+ +Y + ++LFA+ D+ ++ D +P+ + Sbjct: 1 MRTLSIDIETYSDVDLTKCGVYRYVDSPQFEILLFAYKIDEENTQIVDLAQGEELPKGIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + V A N+ FER L + W CT V A S GLP +L+ VG L + Sbjct: 61 SALRDDAVVKTAFNANFERVCLSKYLKQKLSARSWSCTAVQAASLGLPLSLEGVGRVLNI 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QKM+EG+ LI F C+ + +RN P+H E W LF YCK DV V + I KR Sbjct: 121 EEQKMKEGQRLIRYFCLPCRPTIANGMRERNWPHHALEDWELFKRYCKRDVEVEQAIRKR 180 Query: 175 L--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L PL EQ L+ LDQ INDRG VD L + ++ Q L+ + + Sbjct: 181 LSNYPLLESEQLLYQLDQAINDRGIAVDQELVSQAILGDLSYKEQVTQRAYELSG--LDN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + +LK WL G+ ++ L + + V K++ + +++ R+ S+++V K Sbjct: 239 PNSVSQLKGWL-ENQGVFMDSLGK---KDVAKQLKEVDGEILEMLKLRLLMSKTSVKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LPTS 349 + + SD R+ G LQF GA+RTGRW+G + QNLP+ +L + + L Sbjct: 295 AMERCVCSDDRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLDLARTLVKDGQLKAL 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + ++S+ +R+ + G + +VAD A IEARVLAW++GE W+L+ FE G D+Y Sbjct: 355 DLLYDNVPNVLSELIRTAFVPKSGHQFIVADFAAIEARVLAWLSGETWRLEVFEQGGDIY 414 Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 + A F V + R GK+ ELALGY G A + M + GL+ Sbjct: 415 CASAASMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMGALDMGLDEE------ 468 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + + WR + + W + + Sbjct: 469 -----------------------------------ELQPLVNQWRMANPHIVAFWWVIDK 493 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT-- 584 A ++ E + V + + + LPSGR L Y + Sbjct: 494 ASKEVYETREPQ------KVGNLLLYYQAGMFFIALPSGRKLAYVKPRMELNAFGKPGLT 547 Query: 585 -------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 ++ +R TYG KL ENIVQ ++RD+LA GMM K DIVL VHDE V E Sbjct: 548 YEGIGENKKWSRIDTYGPKLVENIVQGIARDLLAHGMMQLQKQELDIVLHVHDEAVVEVK 607 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + + + L + P WA+GLPL+A+GY + Y+K Sbjct: 608 EGEA-SVEEVCQLFATLPDWAEGLPLRADGYACQFYQK 644 >gi|227520155|ref|ZP_03950204.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] gi|227072400|gb|EEI10363.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] Length = 653 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 228/703 (32%), Positives = 323/703 (45%), Gaps = 79/703 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S DLTK G+ KYA+ + ++LFA+ D PVE D +P + Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISE-IPDEIV 59 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 AL + +V +A N+ FER L + + +W CT+V A GLP++L + L Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKHLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 + QK G +LI F CK + RN P H E W+ F EYC DV V I Sbjct: 120 NIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMAIA 179 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +L P+ E +L+ LDQ INDRG +D LA I+ E+++LT + Sbjct: 180 NKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKALTG--L 237 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + L +LK WL E G E L + + L+ L +V R+ S S+ K Sbjct: 238 ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALA-LGNLPENVAEVLKLRLSLSNSSTKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + A SD R+ G LQF GA+RTGRW+G + QNLPR S + + + Sbjct: 296 YLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDVE 355 Query: 351 TS---DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + + +R+ ++A EG + +V+D + IEARV+AW A + W L F T Sbjct: 356 GIELMYENVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLDVFRTHGK 415 Query: 408 LYVTTYARSFNV-------APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 +Y T A+ F++ + KD R GKV LALGYQGG A + M Sbjct: 416 IYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG-------- 467 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A+E+ + + WR + R+ Sbjct: 468 --------------------------------ALENGIEEHELQDIVDRWRTANKRIKNF 495 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN---- 576 W+E +A ++NG ++ + K L + LPSGR L Y Sbjct: 496 WHETQKAVIDCLQNG-----GIKKGPRGLKFYKKAGFLFIQLPSGRKLAYAKAHLKEGDY 550 Query: 577 ---RSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 Y + T + TYGGKL ENIVQA +RD+LAE M+ KAGY IV VHDE Sbjct: 551 GPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAGYPIVFHVHDEA 610 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V E P+ + + + +M+ P WA+GLPL AEG+E+K Y K Sbjct: 611 VAEVPEGE-KSIEEMNKIMSIVPDWAEGLPLNAEGFETKYYMK 652 >gi|307569599|emb|CAR82778.1| phage-related DNA polymerase family protein [Listeria monocytogenes L99] Length = 644 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 217/692 (31%), Positives = 323/692 (46%), Gaps = 70/692 (10%) Query: 2 ATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59 L ID ET S D+ CG Y +ED ++LFA+ +DD PV++ D D +P + E Sbjct: 4 KVLRIDIETYSGRDIKNCGAYAYTESEDFEILLFAYAYDDEPVKVIDLTIDE-IPDTVLE 62 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 L N V AHN+ FERT L +N +P +W CT+V GLP++L + +AL+L+ Sbjct: 63 DLNNRRVLKTAHNANFERTCLAKYYNRKMPPEQWQCTMVHGTLLGLPASLDMMSKALRLA 122 Query: 120 SQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRL 175 +K EGK LI F CK RN P H E W F EYC+ DV V R I K++ Sbjct: 123 QEKDNEGKALIRYFCMPCKPTKANGGRTRNYPEHASEKWAKFIEYCRQDVVVERSIAKKI 182 Query: 176 E--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 P EQ W LDQ I D+G +DV L + + L ++ + LT + + Sbjct: 183 AKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAIACQERYQASLSKKAKGLTG--LENP 240 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 +++LK WL + G + L + + +L+ + L ++ R S++++ K Sbjct: 241 NSVQQLKDWL-ADMGYPVSSLNKDSVSELLAD-EDLDEDVREMLLLRQEMSKTSIKKYEK 298 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL---DQIITHLPTSI 350 + A DGR+RG LQF GA+RTGRW+G + QNLPR D Sbjct: 299 MQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLPRNYIKDIAEVRKDLKAGDYEAFE 358 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 + ++S +R+ IA +G + D + IEARV+AW+AGEQW+L F + +Y Sbjct: 359 MMYSNVPDVLSQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGKIYE 418 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 + ++ F++ +V K+ R GKV ELALGY GG A M Sbjct: 419 ASASQMFHIPIEEVDKNLRQKGKVSELALGYNGGVNALIAMG------------------ 460 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 A+E + + AWR+ ++ LW + + + Sbjct: 461 ----------------------ALEMGLKENELQGIVDAWRKASPAITSLWRGVEKHAKL 498 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYLNTT 583 I K+ + + L + LPSGR+L Y G Y T Sbjct: 499 AISTRKSQ------KYKGLTFYYEAGILFIKLPSGRNLAYFRAKLVPGKYGPQICYEGVT 552 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 + ++YTYGGKL ENIVQA++RD LA + G D V+ VHDE + E +++ + Sbjct: 553 DKGWRKQYTYGGKLVENIVQAIARDCLAISLRRIEDTGIDTVMHVHDEAITEVQESE-SS 611 Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L ++ SWA GLPL+ +G+ S Y K Sbjct: 612 VDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 643 >gi|260845239|ref|YP_003223017.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009] gi|257760386|dbj|BAI31883.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009] Length = 687 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 261/692 (37%), Positives = 378/692 (54%), Gaps = 26/692 (3%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 3 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61 Query: 62 ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + + HNS+F+RTVL+ L P+ RW T+V A ++GLP AL + E L + Sbjct: 62 AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGALGELCEVLGVPQ 121 Query: 121 QK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K +EGK LI FCK R H E WR F Y D+ RE++KRL Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181 Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + + EL W+ DQ INDRG C+DV LA VD E+ +L + + +T G V ++ Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQ 241 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + L + G+ L D+ +T +R ++ L ++ R++AS ++ K L+ Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALM 300 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353 + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L Sbjct: 301 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLF 360 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDL 408 + +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF DL Sbjct: 361 DNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDL 420 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 Y YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ Sbjct: 421 YKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALP 480 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 N + +A+++ + + + + AC+ +K+ WR+ H + W EL Sbjct: 481 NIPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELECTV 539 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTT 583 I + + + +++D L + LPSGR++ Y N +Y+ N+ Sbjct: 540 RTAIATPQKTL-----YCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSY 594 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 +R+ R TYGGKL EN+ QA +RD+LA M AGY IVLTVHDE++ E+PDT++FN Sbjct: 595 SRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFN 654 Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L L+++NP WA +PL A G+E+ YRK Sbjct: 655 DKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|281416455|ref|YP_003347375.1| DNA polymerase [Enterococcus phage phiFL4A] gi|270209631|gb|ACZ64170.1| DNA polymerase [Enterococcus phage phiFL4A] Length = 653 Score = 495 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 227/703 (32%), Positives = 321/703 (45%), Gaps = 79/703 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S DLTK G+ KYA+ + ++LFA+ D PVE D +P + Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISE-IPDEIV 59 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 AL + +V +A N+ FER L + + +W CT+V A GLP++L + L Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 + QK G +LI F CK + RN P H E W+ F EYC DV V I Sbjct: 120 NIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMAIA 179 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +L P+ E +L+ LDQ INDRG +D LA I+ E++ LT + Sbjct: 180 NKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKELTG--L 237 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + L +LK WL E G E L + + L+ L +V R+ S S+ K Sbjct: 238 ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALA-LGNLPENVAEVLKLRLSLSNSSTKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + A SD R+ G LQF GA+RTGRW+G + QNLPR S + + + Sbjct: 296 YLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDVE 355 Query: 351 TS---DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 D + +R+ ++A EG + +V+D + IEARV+AW A + W L+ F T Sbjct: 356 GIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHGK 415 Query: 408 LYVTTYARSFNV-------APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 +Y T A+ F++ + KD R GKV LALGYQGG A + M Sbjct: 416 IYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG-------- 467 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A+E+ + + WR + R+ Sbjct: 468 --------------------------------ALENGIEEHELQDIVDRWRTANKRIKNF 495 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN---- 576 W+E +A ++NG ++ + K L + LPSGR L Y Sbjct: 496 WHETQKAVIDCLQNG-----GIKKGPRGLKFYKKAGFLFIQLPSGRKLAYAKAHLKEGDY 550 Query: 577 ---RSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 Y + T + TYGGKL ENIVQA +RD+LAE M + GY IV VHDE Sbjct: 551 GPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREGYPIVFHVHDEA 610 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V E P+ + + + +M+ P WA+GLPL AEG+E+K Y K Sbjct: 611 VAEVPEGE-KSIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652 >gi|253581725|ref|ZP_04858949.1| DNA polymerase [Fusobacterium varium ATCC 27725] gi|251836074|gb|EES64611.1| DNA polymerase [Fusobacterium varium ATCC 27725] Length = 657 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 219/703 (31%), Positives = 323/703 (45%), Gaps = 75/703 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +D+ K G+ KYA +D ++LFA+ D V++ D ++P+V+ Sbjct: 1 MKHLSIDIETYSSVDIKKAGMYKYALSDDFQILLFAYSIDFGEVKIIDLAKGEILPEVII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL + ++ A+N+ FE L I +W T+ G + L A G A+ L Sbjct: 61 EALNDKNIIKHAYNAPFEWWCL-NQAGYKTSIEQWRDTMFHGLYCGYTAGLGATGAAIGL 119 Query: 119 --SSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 +K GK LI FC K RN P+H E W LF YC DV EI+ Sbjct: 120 PQDKKKDTTGKALIKLFCVPCKPTKKNGGRLRNLPHHEPEKWELFKNYCIQDVVTETEIY 179 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 KRL P+ +EQELW LDQ IN G +D L I D+ +L +E +T + Sbjct: 180 KRLSNFPVPQEEQELWVLDQKINAYGVKIDTELVKGALSINDIVTAELTEEAIQVTG--L 237 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL +TG +E+L + T ++ S + +A++V R +++++ K Sbjct: 238 DNPNSAAQLGKWLKEKTGQDIENLQKGTVSELIGSLEDK--EAVRVLEIRQELAKTSIKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + EA+ DGR+RG LQF GA+RTGRW+G + QNLPR + + I + Sbjct: 296 YVAMEEAICPDGRIRGLLQFYGANRTGRWAGRLVQVQNLPRNYLETLDYAREIVKSQDAD 355 Query: 351 ---TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + +S +R+ + SEG K VVAD + IEARV+AW+AGEQW+ + F T Sbjct: 356 FLKLVYGNVSDTLSQLIRTAFVPSEGHKFVVADFSAIEARVIAWLAGEQWRQEVFATHGK 415 Query: 408 LYVTTYARSFNVAPA-----QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 +Y + ++ F V R GKV ELALGY G + A M Sbjct: 416 IYEASASQMFGVPIELIKKGNPEYALRQKGKVAELALGYGGSSGALIAMG---------- 465 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A++ V + WR + R+++LW Sbjct: 466 ------------------------------ALDMGLEEKELPDVVRRWRNANKRITDLWY 495 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR----- 577 + A + +E G+ + + + D++ L + LPSGR L Y Sbjct: 496 GIENAVIKLMETGETQGLKGIIFSREIDLIYDQDFLTIKLPSGRKLYYPKPHLKENRFGS 555 Query: 578 -----SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 +N TT++ + TYGGKL ENIVQA+SRD LA + G V+ +HDE Sbjct: 556 NALHYFGVNQTTKKWEVQETYGGKLVENIVQAISRDCLAVTLKRLETEGLQTVMHIHDEA 615 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V + + + + LM WA GL LKA G+ES Y K Sbjct: 616 VIDADPNVD--LNKVCELMGQPIEWAPGLLLKAAGFESGYYMK 656 >gi|29374964|ref|NP_814117.1| DNA polymerase, putative [Enterococcus faecalis V583] gi|29342422|gb|AAO80188.1| DNA polymerase, putative [Enterococcus faecalis V583] gi|315574067|gb|EFU86258.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B] gi|315582012|gb|EFU94203.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A] Length = 653 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 227/703 (32%), Positives = 322/703 (45%), Gaps = 79/703 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S DLTK G+ KYA+ + ++LFA+ D PVE D +P + Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISE-IPDEIV 59 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 AL + +V +A N+ FER L + + +W CT+V A GLP++L + L Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKYLGIPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 + QK G +LI F CK + RN P H E W+ F EYC DV V I Sbjct: 120 NIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMAIA 179 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +L P+ E +L+ LDQ INDRG +D LA I+ E+++LT + Sbjct: 180 NKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKALTG--L 237 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + L +LK WL E G E L + + L+ L +V R+ S S+ K Sbjct: 238 ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALA-LGNLPENVAEVLKLRLSLSNSSTKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + A SD R+ G LQF GA+RTGRW+G + QNLPR S + + + Sbjct: 296 YLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDVE 355 Query: 351 TS---DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 D + +R+ ++A EG + +V+D + IEARV+AW A + W L+ F T Sbjct: 356 GIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHGK 415 Query: 408 LYVTTYARSFNV-------APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 +Y T A+ F++ + KD R GKV LALGYQGG A + M Sbjct: 416 IYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG-------- 467 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A+E+ + + WR + R+ Sbjct: 468 --------------------------------ALENGIEEHELQDIVDRWRTANKRIKNF 495 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN---- 576 W+E +A ++NG ++ + K L + LPSGR L Y Sbjct: 496 WHETQKAVIDCLQNG-----GIKKGPRGLKFYKKAGFLFIQLPSGRKLAYAKAHLKEGDY 550 Query: 577 ---RSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 Y + T + TYGGKL ENIVQA +RD+LAE M + GY IV VHDE Sbjct: 551 GPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREGYPIVFHVHDEA 610 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V E P+ + + + +M+ P WA+GLPL AEG+E+K Y K Sbjct: 611 VAEVPEGE-KSIEEMNKIMSVVPDWAEGLPLNAEGFETKYYMK 652 >gi|227875067|ref|ZP_03993212.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|304390310|ref|ZP_07372263.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|306817354|ref|ZP_07451099.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239] gi|227844345|gb|EEJ54509.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|304326066|gb|EFL93311.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304649795|gb|EFM47075.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239] Length = 655 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 224/706 (31%), Positives = 318/706 (45%), Gaps = 83/706 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TLF D E+ S L K G+ YAE D ++LF + D P+E+ D + +P + Sbjct: 1 MRTLFCDIESFSLAQLAKTGVYPYAEHPDFELLLFGYSIDGGPIEVVDLANGQSIPDEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109 AL + V AHN+ FER L A P +W CT++ + GLP +L Sbjct: 61 AALVDPSVVKWAHNAAFERVCLSAWLRTHHPELLADGFLGPRQWRCTMIWSAYLGLPMSL 120 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGE---THECLYDRNKP-NHREAWRLFGEYCKGDV 165 AV LKL QK GK+LI +FC RN P W F +Y + DV Sbjct: 121 DAVATVLKLDVQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRRDV 180 Query: 166 TVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V I R P+ E + + LDQ IND G +D L + + R + Sbjct: 181 EVELAIHDRLACFPMPESEWDTYTLDQRINDAGILLDHTLVDNAVGVDEHHRNATLARAQ 240 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +LT + + +LK WL G L+ L + V ++ T +V R Sbjct: 241 TLTG--LENPNSPIQLKQWLASR-GCVLDSLAK---AEVDAALDTATGTVKEVLGLRGDL 294 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K + SDGR RG +QF GA RTGR++G + QNLPR + + + Sbjct: 295 AKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARTL 354 Query: 344 T---HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +L +S +R+ I S G + +VAD + IEARV+AW+AGE L+ Sbjct: 355 VRTGNLEALELLHESVPDTLSQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGETTTLQ 414 Query: 401 AFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 AF G+DLY T +R F V + + R GK+ LA G+ G A ++M Sbjct: 415 AFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKLAVLACGFGGSTGALERMG------ 468 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A+ + + AWR + + Sbjct: 469 ----------------------------------ALTMGLAEHELKPIVDAWRAANPHIV 494 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 LW + +A I + ++I R R + L + LPSGR L Y +G N Sbjct: 495 ALWAGVEEAAIAAIASRQSIRLRNLR------FSVEAGILFIELPSGRRLAYVKPRLGEN 548 Query: 577 R-------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 R TT R+ + TYGGKLTENIVQA++RD+L GM KAG+ IV+ VH Sbjct: 549 RWGGTSITYTGTTTARRWGQLETYGGKLTENIVQAIARDLLVTGMHAVAKAGHQIVMHVH 608 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DEIV + P+ F A+ LM++ P+WA+GLPL A+GYE YRK Sbjct: 609 DEIVIDEPENSGFTATGACELMSTLPAWAEGLPLDADGYECAYYRK 654 >gi|298346386|ref|YP_003719073.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] gi|298236447|gb|ADI67579.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] Length = 658 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 207/692 (29%), Positives = 311/692 (44%), Gaps = 72/692 (10%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59 +L +D ET S ++L++CG+ +Y +D ++L ++ DD V D +P + Sbjct: 20 KSLALDLETFSAVNLSQCGVYRYCDDPSFRILLCSYSVDDSDVVTVDLASGEQLPPEVVA 79 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 AL++ V A+N+ FERT L A + W CT+V A + GLP +LK VG L L+ Sbjct: 80 ALDDPSVIKWAYNAAFERTCLSAHLGHRLDPTGWRCTMVWAATLGLPLSLKDVGTVLGLA 139 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR--LEP 177 QK+ EGK+LI F + AW LF +Y DV V I ++ P Sbjct: 140 HQKLAEGKDLIKYFSLPTKT--GIRHQPSDDSAAWALFKQYNARDVEVETTIRRKLSHHP 197 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + + + +DQ INDRG +D LA R + + LT + + Sbjct: 198 VPDEVWGQYEVDQRINDRGIHIDTRLATNAMACDKKYRKRTLARAQELTG--LDNPASPL 255 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L++WL + G + + + + V S+ T + R S+S+V K + +A Sbjct: 256 QLQSWLAEQ-GCKISSMAK---EDVDSALDTATGSVREALELRQDLSKSSVAKYRKMADA 311 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---SITSDP 354 +DGR G LQF GASRTGRW+G + QNLPR + + H P Sbjct: 312 TCADGRAHGLLQFYGASRTGRWAGRLVQVQNLPRNYLPDLAQARSLVHYGDFDVLEMLYP 371 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +S +R+ I SE + +VAD + IEARVLAW+AGE+ L AF GEDLY T + Sbjct: 372 SVPDTLSQLIRTAFIPSENHRFIVADYSAIEARVLAWLAGEETTLAAFTNGEDLYCATAS 431 Query: 415 RSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 F V + + R GK+ LA GY G A + M Sbjct: 432 AMFGVPVEKHGANAELRQKGKIAVLACGYNGSVGALKAMG-------------------- 471 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 A++ + + + AWR + + +W+++ Q Q I Sbjct: 472 --------------------ALKMGLTASELQPIVDAWRAANPNIVAMWHDVDQTAIQAI 511 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT------ 584 + + K L + LPSGR L Y +G NR + T Sbjct: 512 TTRSTVTLG------NLSFTGTKGMLFITLPSGRRLAYVKPGLGVNRFGGTSITYWGQGI 565 Query: 585 -RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 R+ + TYGGKL ENIVQA +RD+LAE + AG+++V+ +HDE+V + Sbjct: 566 NRKWQQLETYGGKLVENIVQATARDLLAEAITRIENAGHEVVMHIHDEVVVDESKDSGTT 625 Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + LM P+WA GLP+ A GY+ Y K Sbjct: 626 VADICTLMNQLPTWALGLPIDAAGYKCDFYMK 657 >gi|304406771|ref|ZP_07388426.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9] gi|304344304|gb|EFM10143.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9] Length = 653 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 227/700 (32%), Positives = 331/700 (47%), Gaps = 73/700 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S ID+ K G KYA+ D +++FA+ +D PV++ D +PQ + Sbjct: 1 MRTLNIDIETYSSIDIKKAGAYKYAQSPDFQILMFAYSWDGGPVQIVDLAQGEYLPQEIV 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL + V A+N+ FE L F I +W CT V G + L AVGEAL + Sbjct: 61 EALADPAVVKHAYNAAFEWYCLNRFFYSPIE--QWRCTQVHGLYCGYTAGLGAVGEALGI 118 Query: 119 SSQ--KMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 K+ G LI F CK + R P+H E W+LF EYC GDV EI Sbjct: 119 PQDKRKLGTGGSLIRTFCIPCKPTRTNGMRTRTLPHHEPEKWKLFKEYCVGDVVAEMEIQ 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +RL P+ +E +LW+LDQ IN RG D+ + + + ++L E SLT + Sbjct: 179 RRLSAFPVPDQEWQLWHLDQRINARGLFCDLQMVEGALAVDEQVTSELRAEAISLTG--L 236 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + + +++L WL ETG +E+L + T +++ + +A +V R S+++ K Sbjct: 237 DNPKSVQQLSKWLAEETGEEVENLQKGTVSKLIDKLDE--GKARRVLEIRQELSKTSTKK 294 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLP 347 + A SD R+RG LQF GA+RTGRW+G + QNLPR S E + + + Sbjct: 295 YAAMQTAAGSDQRVRGLLQFYGANRTGRWAGRLVQIQNLPRNYLSTLEYARQLVVERKVE 354 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + +S +R+ + GK+L VAD + IEARV+AW+AGEQW+L F T Sbjct: 355 MLKFVYGNVPDTLSQLIRTAFVVPAGKQLGVADFSAIEARVIAWLAGEQWRLDVFATHGK 414 Query: 408 LYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 +Y + ++ F V Q+ K D R GKV ELALGYQGG A M Sbjct: 415 IYEASASQMFGVPIEQIGKGSDLRQKGKVAELALGYQGGKGALIAMG------------- 461 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 A++ + WR + R+ +LW + Sbjct: 462 ---------------------------ALDQGLTEAELPEIVTRWRNANRRIVDLWYSME 494 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRS----- 578 A + +E G+ + R + ++ + LPSGR L Y + N Sbjct: 495 AAAIEVMETGQPVGVRGLIFARESHHATKQDFFTITLPSGRKLFYAKPFLRENDFGKPAL 554 Query: 579 ---YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 ++ T+++ T TYGGKL EN VQA++RD LA +M GY IVL VHDE+ E Sbjct: 555 HYWGMDQTSKKWTVLNTYGGKLVENCVQAIARDCLAVTLMRLDHVGYPIVLHVHDEVGAE 614 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + +M WA GLPLK +G+ + Y K Sbjct: 615 L--SSADELDRMLEIMAQPIQWAPGLPLKGDGFVTNFYMK 652 >gi|255525749|ref|ZP_05392680.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] gi|296188034|ref|ZP_06856426.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] gi|255510572|gb|EET86881.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] gi|296047160|gb|EFG86602.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] Length = 646 Score = 488 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 216/696 (31%), Positives = 329/696 (47%), Gaps = 76/696 (10%) Query: 4 LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L ID ET S +D+TK G+ Y AED ++LFA+ ++D + + D +PQ + E L Sbjct: 2 LSIDIETYSSVDITKSGVYAYTEAEDFEILLFAYAYEDKEINIIDLAFGEKLPQGIIEDL 61 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 N + A N+ FERT L N +P +W C+ V A + G +L+ ++L L Q Sbjct: 62 TNPKLIKTAFNANFERTCLAKYLNKPMPPEQWRCSAVHALALGFGGSLEGAAKSLNLQQQ 121 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRLEPLS- 179 KM+EGK LI F RN P H E W++F YCK DV V R + K+LE Sbjct: 122 KMKEGKALIRYFSMPCKR-GERSRNLPQHNIEKWKVFKTYCKQDVEVERAVRKKLEKYPV 180 Query: 180 -SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 KE ELW LDQ IND G +D L H+ + ++K +E +LT + + + Sbjct: 181 TKKEWELWALDQKINDSGVKIDKVLVHSAIECDKTCQSKKTEEAAALTG--LENPNSQVQ 238 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LK WL + G+ E L++ + +L + + +V R S+++V K + A+ Sbjct: 239 LKGWLETK-GVKAESLSKEKVRELLKEVEDE--KVKRVLKLRQELSKTSVKKYEAIKRAV 295 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTSITSDPD 355 D R+RG L+F GA+RTGRWSG + QNLPR + + E +++ + Sbjct: 296 CKDERVRGLLKFYGANRTGRWSGKLVQTQNLPRNTMDNLEAARMLLKSGNYEMLEVLFYS 355 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +++S +R+ I + + +V+D + IEARV+AW+AGE+W + F+ +Y +R Sbjct: 356 VPEVLSQLIRTAFIPAFNSRFIVSDFSAIEARVIAWLAGEKWVIDTFKGSGKVYEMAASR 415 Query: 416 SFNVAPAQVTKD-----QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 F V ++ K R GKV LA GYQG A M + Sbjct: 416 MFGVPIEKIVKGNMEYSLRQKGKVATLACGYQGSTGALIAMGAVK--------------- 460 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + AWR+ +S + +LW ++ A + Sbjct: 461 -------------------------MGLKEEELSGIVAAWRKSNSNIVKLWRKIEDAAIK 495 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS-----------Y 579 + K + + + + L + LPSGRSL Y + Sbjct: 496 AVREKKVVKMQYG-----LEFFGSEEFLFIKLPSGRSLSYVRPRIEKDFRFNKLKLTYEG 550 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + T+ R TYGGKLTENIVQA++RD LA M+ +AGY IV VHDE++ + P+ Sbjct: 551 IEQGTKAWGRLNTYGGKLTENIVQAIARDCLAYAMLRLDRAGYKIVFHVHDEVILDVPNG 610 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + +M WAKGLPLKA+G+E+ Y+K Sbjct: 611 F-GSLKEVNEIMGKPIEWAKGLPLKADGFETDYYKK 645 >gi|322382461|ref|ZP_08056356.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae B-3650] gi|321153574|gb|EFX45963.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae B-3650] Length = 662 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 215/703 (30%), Positives = 315/703 (44%), Gaps = 78/703 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +DL CG+ +Y E D V+LFA+ +DD PV++ D +P + Sbjct: 9 MKILQIDLETYSSVDLKDCGVYRYVESPDFEVLLFAYAYDDDPVQVIDLTAFEDLPDQVV 68 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L + +V A N+ FERT +K F + +W CT V A + GLP L+ V E LKL Sbjct: 69 HDLTDPNVLKTAFNAAFERTCIKKHFGIKCNPSQWRCTAVWALALGLPGYLEGVAEVLKL 128 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH--REAWRLFGEYCKGDVTVTREIFK 173 +QK GK LI F CK RN P H E W + Y DV V RE+ + Sbjct: 129 EAQKDTRGKNLIKYFSVPCKPTKANGGRTRNHPPHHDMEKWEQYKAYNIQDVVVEREVRR 188 Query: 174 RLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 +LE P+ E +LW LDQ INDRG +D L + D +T L QE + +T + Sbjct: 189 KLERFPVPQHEWDLWALDQRINDRGIQLDPTLFNQAIDCADQYKTGLLQEAKDIT--QLE 246 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + L KLK WL + + L + +L +V R +++V K Sbjct: 247 NPNSLTKLKEWLAEQGLETPDGLGKEHMPTLLVQAPDEDT--RRVLQIRQELGKTSVDKY 304 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT--- 348 N + ++ +DGR RG LQF GA+RTGRW+G + QNLP+ + + + + Sbjct: 305 NAMARSICADGRARGILQFCGANRTGRWAGRIIQVQNLPQNKLNALWMAREVLKSGDFDL 364 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 ++S +R+ I S G + +V+D + IEAR++AW+A E W L F+ + Sbjct: 365 LEMLYGALPSVLSQLIRTVFIPSPGCRFIVSDFSAIEARIIAWLADEHWVLNVFQDHGKI 424 Query: 409 YVTTYARSFNVAPA-----QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 Y ++ F V + RA GKV LA GYQGG A KM Sbjct: 425 YEAAASQMFKVPMETIVKGHPNYELRAKGKVATLACGYQGGPPALIKMG----------- 473 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 A++ + K WR+ + R+ +LW Sbjct: 474 -----------------------------ALKSGIPEEELPGIVKRWRKANPRIVKLWYA 504 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR------ 577 +A + + + V + L LPSGRSL Y + Sbjct: 505 AEEAALTAVREKRTVPLA-----HGVKYRYKSGTLFADLPSGRSLAYVNPRIKPDPNFGK 559 Query: 578 -----SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 ++ ++ TYGG+L EN+VQA++RD LAE +M A Y V+ VHDE+ Sbjct: 560 DGLVFDGMDQIKKKWMSHRTYGGRLVENLVQAIARDCLAESLMRLDAAEYRTVMHVHDEV 619 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V + P + + +M+ WA GLPL A G+E + Y+K Sbjct: 620 VLDVPIGT-GSVDHVTGIMSQPIDWAPGLPLSAAGFECEFYQK 661 >gi|160937655|ref|ZP_02085015.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC BAA-613] gi|158439300|gb|EDP17052.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC BAA-613] Length = 661 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 219/707 (30%), Positives = 321/707 (45%), Gaps = 82/707 (11%) Query: 3 TLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQ----V 56 T+ +D ET S ID+ + G+ YA D ++L + +D V++ D P+ Sbjct: 2 TMNVDIETYSSIDIREAGVYAYASAPDFEILLIGYRYDGQDVKVIDLTDPLADPERDFPD 61 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 E L + DV A+N+ FERT L + +P +W CT V A + GLP L VGEAL Sbjct: 62 FWEGLYSPDVIKTAYNANFERTCLASWLGRPMPPEQWRCTAVHAATLGLPGTLGGVGEAL 121 Query: 117 KL--SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDV--TVT 168 L QK + GK LI F CK + RN P H + W+LF EY + DV T Sbjct: 122 GLPEDKQKDKIGKSLIQYFCKPCKPTKTNGMRSRNLPEHAPDKWQLFIEYNRQDVVAEAT 181 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 ++ P++ +EQELW LDQ IND G +D+ LA + Q + + +L QE LT Sbjct: 182 IREKLQIYPVARQEQELWNLDQHINDHGVRLDMDLADKIIQYDGIYQERLKQEARKLTG- 240 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKLTPQAI--QVFNNRMRA 283 +++ L +LK W F+ GL + +T+ + + L K ++ R Sbjct: 241 -LNNPNSLPQLKMWFFMTYGLDVPSITKDSIPVIEAQLKELKTTHDVLPGLRMLQIRKEL 299 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 +++V K + A+ DG LRG LQF GA+RTGRW+G + NLP+ +L + + Sbjct: 300 GKTSVKKYQAMRHAVCPDGYLRGILQFYGANRTGRWAGRIVQVHNLPQNKIPDLDLARDL 359 Query: 344 THLPT---SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + S +R+ I SEG + VV+D + IEARV+AW+A E+W+L Sbjct: 360 VKQEDFDTLELLFEGIPFVFSQLIRTAFIPSEGYRFVVSDFSAIEARVIAWLADEKWRLN 419 Query: 401 AFETGEDLYVTTYARSFNVAPA--QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 F T +Y + A+ F+V + R GKV ELALGY GG A + M Sbjct: 420 VFRTHGKIYEASAAQMFHVPIENIKKGSRLRQQGKVAELALGYGGGFGAMKAMDKAG--- 476 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + WR+ + Sbjct: 477 --------------------------------------TIPDDEIPMIIANWRKASPNIC 498 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR- 577 +LW A IE + I + + L + LPSGR L Y D Sbjct: 499 KLWRNAEAAARAAIEERRTIKLK-----HGLSFSYINRILFIGLPSGRKLAYYDTRIEDD 553 Query: 578 ---------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 + ++ T++ R T+GGKL ENIVQA +RD LA M + AGY IV+ V Sbjct: 554 EKGKSVITYAGVDQETKKWGRLKTWGGKLVENIVQATARDCLAVTMERVSGAGYQIVMHV 613 Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 HDEI+ + P+TD + +M WA+ LPL+ +GYE+ Y+K Sbjct: 614 HDEIIVDVPETDIDALEKITAIMAQPVPWAQELPLRGDGYETPFYKK 660 >gi|168179450|ref|ZP_02614114.1| DNA polymerase [Clostridium botulinum NCTC 2916] gi|182669649|gb|EDT81625.1| DNA polymerase [Clostridium botulinum NCTC 2916] Length = 653 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 208/701 (29%), Positives = 315/701 (44%), Gaps = 75/701 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVL- 57 M TL ID ET +D+ G KY E ++L A+ +DD PV++ D ++ +P+VL Sbjct: 1 MRTLAIDVETYCELDIKSVGAYKYCEHPSFEIMLLAYAYDDEPVKIIDIMNGEKIPEVLE 60 Query: 58 KEALEN-TDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 + E+ + V A N+ FER +KA F L W CT+V A + GLPS+L VG+A Sbjct: 61 FDIYEHYSKVLKTAFNANFERNAIKAHFKGLKCHPGDWECTMVKALTLGLPSSLDMVGKA 120 Query: 116 LKL--SSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 LK QKM+EGK LI FCK RN P H E W F EYCK DV V R Sbjct: 121 LKFEEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVER 180 Query: 170 EIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 EI + KE+ELW LDQ INDRG VD+ L + + + +L +E +LT Sbjct: 181 EIRNLLNRYKTTIKEKELWQLDQHINDRGVRVDLVLVENAIKCDESYQERLKEEAINLTG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 +++ +LK W+ G + LT+ + ++ +K ++ R ++++ Sbjct: 241 --LNNPNSPTQLKKWISERVGHEVTSLTKDSIPILIEESKDKN--VKKILELRQLMAKTS 296 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---T 344 + K T++ A D R+RG LQF GA+RTGRW+G + QNLP+ E + + Sbjct: 297 IKKYQTMLNARCDDERVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLEEARNLLRNG 356 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 T +S +R+ I ++G + +VAD + IEARV+A++A EQW+L F+ Sbjct: 357 DFETIEFLFDSIPDTLSQLIRTAFIPTDGNRFIVADFSAIEARVIAYLANEQWRLDVFKE 416 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 G D+Y + ++ F V + + K Sbjct: 417 GGDIYCASASKMFKVPVEKHGINGHLRAKG------------------------------ 446 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + + ++ WR+ +++ W + Sbjct: 447 ---------KIAELALGYGGAGGAIRAFDKTGSIPDEDLPKLVSDWRKASPHITQFWWNV 497 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS------ 578 +A ++ I + + D L + LPSGR L Y Sbjct: 498 DKAAKKAITEKTTVALH-----HGIKFIYDPGVLFIQLPSGRKLSYLRPKIEEGKFGSDV 552 Query: 579 ----YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + T++Q R TYG KL ENIVQA +RD LAE M K G+ +V+ VHDE+V Sbjct: 553 ITYEGMEQTSKQWKRIETYGPKLVENIVQAFARDCLAETMARVEKKGFKVVMHVHDELVL 612 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + + + + + WA GLPLKA+GYE Y K Sbjct: 613 DVSK-EIGSVEEICSIFAESIEWAPGLPLKADGYECNYYMK 652 >gi|157311150|ref|YP_001469195.1| polymerase [Streptococcus phage P9] gi|119104299|gb|ABL61044.1| polymerase [Streptococcus phage P9] Length = 640 Score = 482 bits (1240), Expect = e-133, Method: Composition-based stats. Identities = 224/696 (32%), Positives = 324/696 (46%), Gaps = 78/696 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+ K G+ KYA ED ++LFA+ D VE D +P+ +K Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 + L + V A N+ FER L L + +W CT+VLA+ GLPS+L+ L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 KL+ +K GK LI F CK RN P H E W++F +YC DV V I Sbjct: 119 KLAQEKDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++LE P+ +E + + DQ INDRG +D L + DV+ L EL+++T Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKAITGLA- 237 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL G LT+ V K + +V +++ + S++ K Sbjct: 238 -NPNSRAQLLPWLKEH-GYSANGLTK---ADVEQELKTAEGELKRVLELKLQTAMSSLKK 292 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LP 347 + AM SDGR+ G LQF GASRTGRW+G V QNL R + + + Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + VR+ ++A +G V+D + IEARV+AW AGEQW+L F T Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A+ + + WR+ + ++ + W ++ +A Sbjct: 458 -------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRA 492 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580 + I++ I K R + K L + LPSGR+L Y D G+ Y Sbjct: 493 AIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIYE 546 Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + T + TYGGKL ENIVQA +RDILAE ++ AGY +V VHDE + E Sbjct: 547 GQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE---G 603 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + LM P WA+GLPL +EGY +K Y K Sbjct: 604 SGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|21910979|ref|NP_665247.1| DNA polymerase A domain-containing protein [Streptococcus pyogenes MGAS315] gi|28876473|ref|NP_795675.1| putative DNA polymerase A domain [Streptococcus pyogenes phage 315.6] gi|28895334|ref|NP_801684.1| DNA polymerase [Streptococcus pyogenes SSI-1] gi|50913380|ref|YP_059352.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] gi|21905187|gb|AAM80050.1| putative DNA polymerase A domain - phage-associated [Streptococcus pyogenes MGAS315] gi|28810580|dbj|BAC63517.1| putative DNA polymerase [Streptococcus pyogenes SSI-1] gi|50902454|gb|AAT86169.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] Length = 640 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 222/696 (31%), Positives = 324/696 (46%), Gaps = 78/696 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+ K G+ KYA ED ++LFA+ D VE D +P+ +K Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 + L + V A N+ FER L L + +W CT+VLA+ GLPS+L+ L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 KL+ +K GK LI F CK RN P H E W++F +YC DV V I Sbjct: 119 KLAQEKDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++LE P+ +E + + DQ INDRG +D L + DV+ L EL++LT + Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG--L 236 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL G LT+ V K + +V +++ + S++ K Sbjct: 237 DNPNSRTQLLPWLKEH-GYSASGLTK---ADVEKELKTAEGELKRVLELKLQTAMSSLKK 292 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LP 347 + A SDGR+ G LQF GASRTGRW+G V QNL R + + + Sbjct: 293 YEAMERARCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + VR+ ++A +G V+D + IEARV+AW AGEQW+L F T Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A+ + + WR+ + ++ + W ++ +A Sbjct: 458 -------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRA 492 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580 + I++ + K R + K L + LPSGR+L Y D G+ Y Sbjct: 493 AIKAIKSRAPVRLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVYE 546 Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + T + TYGGKL ENIVQA +RDILAE ++ AG+ +V VHDE + E Sbjct: 547 GQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGHGVVFHVHDEAIIE---G 603 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + LM P WA+GLPL +EGY +K Y K Sbjct: 604 SGLTIEEVNDLMAQAPEWAEGLPLNSEGYITKYYMK 639 >gi|139473888|ref|YP_001128604.1| phage DNA polymerase [Streptococcus pyogenes str. Manfredo] gi|209559298|ref|YP_002285770.1| DNA polymerase [Streptococcus phage NZ131.2] gi|134272135|emb|CAM30380.1| putative phage DNA polymerase [Streptococcus pyogenes str. Manfredo] gi|209540499|gb|ACI61075.1| DNA polymerase [Streptococcus phage NZ131.2] Length = 640 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 224/696 (32%), Positives = 325/696 (46%), Gaps = 78/696 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+ K G+ KYA ED ++LFA+ D VE D +P+ +K Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 + L + V A N+ FER L L + +W CT+VLA+ GLPS+L+ L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 KL+ +K GK LI F CK RN P H E W++F +YC DV V I Sbjct: 119 KLAQEKDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++LE P+ +E + + DQ INDRG +D L + DV+ L EL++LT + Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG--L 236 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL G + LT+ V K + +V +++ + S++ K Sbjct: 237 DNPNSRAQLLPWLKEH-GYSVNGLTK---ADVEQELKTAEGELKRVLELKLQTAMSSLKK 292 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LP 347 + AM SDGR+ G LQF GASRTGRW+G V QNL R + + + Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + VR+ ++A + V+D + IEARV+AW AGEQW+L F T Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A+ + + WR+ + ++ + W ++ +A Sbjct: 458 -------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRA 492 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580 + I++ I K R + K L + LPSGR+L Y D G+ Y Sbjct: 493 AIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVYE 546 Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + T + TYGGKL ENIVQA +RDILAE ++ AGY +V VHDE + E Sbjct: 547 GQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE---G 603 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + LM P WA+GLPL +EGY +K Y K Sbjct: 604 SGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|225871341|ref|YP_002747288.1| phage DNA polymerase [Streptococcus equi subsp. equi 4047] gi|225700745|emb|CAW95387.1| putative phage DNA polymerase [Streptococcus equi subsp. equi 4047] Length = 640 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 224/696 (32%), Positives = 324/696 (46%), Gaps = 78/696 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+ K G+ KYA ED ++LFA+ D VE D +P+ +K Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 + L + V A N+ FER L L + +W CT+VLA+ GLPS+L+ L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 KL +K GK LI F CK RN P H E W++F +YC DV V I Sbjct: 119 KLVQEKDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++LE P+ +E + + DQ INDRG +D L + DV+ L EL++LT + Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG--L 236 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL G + LT+ V K + +V +++ + S++ K Sbjct: 237 DNPNSRAQLLPWLKEH-GYSVNGLTK---ADVEQELKTAEGELKRVLELKLQTAMSSLKK 292 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LP 347 + AM SDGR+ G LQF GASRTGRW+G V QNL R + + + Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + VR+ ++A + V+D + IEARV+AW AGEQW+L F T Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A+ + + WR+ + ++ + W ++ +A Sbjct: 458 -------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRA 492 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580 + I++ I K R + K L + LPSGR+L Y D G+ Y Sbjct: 493 AIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVYE 546 Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + T + TYGGKL ENIVQA +RDILAE ++ AGY +V VHDE + E Sbjct: 547 GQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE---G 603 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + LM P WA+GLPL +EGY +K Y K Sbjct: 604 SGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|283469578|emb|CAQ48789.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398] gi|283470753|emb|CAQ49964.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398] Length = 653 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 225/705 (31%), Positives = 324/705 (45%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D P+ D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ E W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KESTGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+E + + +WR + + Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578 W +A T+++ K R K L++ LPSGR+L Y S Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548 Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + + R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHD Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + +M WAKGL L ++G+ S Y K Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|94989082|ref|YP_597183.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429] gi|94542590|gb|ABF32639.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429] Length = 640 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 227/696 (32%), Positives = 326/696 (46%), Gaps = 78/696 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+ K G+ KYA ED ++LFA+ D VE D +P+ +K Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 + L + V A N+ FER L L + +W CT+VLA+ GLP++L+ L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIF 172 KL+ +K GK LI F CK RN P H W++F YC DV V I Sbjct: 119 KLAQEKDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMAIA 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++LE P+ +E + + DQ INDRG +D L + DV+ L EL++LT + Sbjct: 179 EKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG--L 236 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL G LT+ V KK + +V +++ + S++ K Sbjct: 237 DNPNSRAQLLPWLKEH-GYSANGLTK---ADVEQELKKAEGELKRVLELKLQTAMSSLKK 292 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LP 347 + AM SDGR+ G LQF GASRTGRW+G V QNL R + + + Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + VR+ ++A +G V+D + IEARV+AW AGEQW+L F T Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A+ + V WR+ + ++ + W ++ +A Sbjct: 458 -------------------------ALNMGVKEEELQGVVDDWRRANKKIVQFWKDVQRA 492 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580 + I++ I K R + K L + LPSGR+L Y D G+ Y Sbjct: 493 AIKAIKSRAPIKLGKIR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIYE 546 Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 R T + TYGGKL ENIVQA +RDILAE ++ AGYD+V VHDE + E Sbjct: 547 GQGDRAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYDVVFHVHDEAIIE---G 603 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + LM+ P WA+GLPL +EGY +K Y K Sbjct: 604 SGLIIEEVNDLMSQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|268610653|ref|ZP_06144380.1| hypothetical protein RflaF_14297 [Ruminococcus flavefaciens FD-1] Length = 658 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 204/713 (28%), Positives = 302/713 (42%), Gaps = 94/713 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M T+ ID ETRS D+TKCG+ YA+ + L + DD V+L+D + +P+ + Sbjct: 1 MKTIEIDLETRSDRDITKCGVYAYADSPYFAITLMSVSIDDGAVQLYDLANGDRVPEDIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP------------------IHRWICTLVLA 100 AL + V A N FER L + P W CT++ Sbjct: 61 TALVDESVVKRAFNVNFERVCLSRYLREEYPQIFRSYSIDADTVGDYLSPVGWQCTMIHC 120 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR--NKPNHREAWRLFG 158 R+ GL S L + G ALKL QKM EGK LI FC + + + E W F Sbjct: 121 RTLGLSSTLASAGAALKLEQQKMPEGKALIKYFCVPYDTVDGIPQFHSPADAPEKWETFK 180 Query: 159 EYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 Y K DV I +RL P+ E +YLDQ INDRG VD+ L + + Sbjct: 181 AYNKQDVEAELAIDRRLSRFPVPDFIWEQFYLDQEINDRGIRVDMELVEAALTLDAQAKA 240 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276 L E+ LT + + + +L WL + G + L + + +L + K V Sbjct: 241 TLSSEMRRLTG--IENPNSVYQLLEWLGEQ-GYKSDCLDKAAVKELLKTVKDP---VKSV 294 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R+ S+S+V K + A SD R RG F GASRTGRW+G + QNLP+ Sbjct: 295 LELRLMLSKSSVKKYQAMQTAACSDSRARGMFSFYGASRTGRWAGRIIQLQNLPQNHIPD 354 Query: 337 EELDQI---ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + + D +S +R+ + G K ++AD + IEARV+AW+A Sbjct: 355 LTEARNTVKYGYYDEVEMFYGDVPDTLSQLIRTAFVPRPGYKFIIADFSAIEARVIAWLA 414 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKM 451 GE+W++ AF G D+Y + ++ F V + + R GKV ELA GY G A + M Sbjct: 415 GEKWRMDAFANGADIYCASASKMFGVPVVKHGVNGELRQKGKVAELACGYGGSVGAMKAM 474 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 + +++ WR Sbjct: 475 G----------------------------------------GDALNLSDSELKQIVTDWR 494 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY- 570 + + W + A ++ I+ + L + LPSGR L Y Sbjct: 495 DASPNIVKFWWTVDDAVKKAIKQKITTETHG------LQFSYQSKMLFITLPSGRKLCYA 548 Query: 571 -RDVGNNR------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 +G N+ +Y+ +++ R +YG K ENIVQAV+RD+L M Sbjct: 549 HPQIGENQFGGESVTYMGVGASKKWERIESYGPKFVENIVQAVARDLLMFSMQTM--RCC 606 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV +HDE++ E + + M P+WA+GL L+A+GYE + YRK Sbjct: 607 FIVGHIHDEMIIEA--DRRMSLDEVCRQMERTPAWAEGLLLRADGYECEFYRK 657 >gi|258455585|ref|ZP_05703542.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937] gi|257862273|gb|EEV85044.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937] Length = 653 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 225/705 (31%), Positives = 325/705 (46%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG+ KY AED +++ A+ D P+ D P Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ E W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+E + + +WR + + Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578 W +A T+++ K R K L++ LPSGR+L Y S Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548 Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + + R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHD Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + +M WAKGL L ++G+ S Y K Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|71911263|ref|YP_282813.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005] gi|94992973|ref|YP_601072.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096] gi|71854045|gb|AAZ52068.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005] gi|94546481|gb|ABF36528.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096] Length = 640 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 226/696 (32%), Positives = 325/696 (46%), Gaps = 78/696 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+ K G+ KYA ED ++LFA+ D VE D +P+ +K Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 + L + V A N+ FER L L + +W CT+VLA+ GLP++L+ L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIF 172 KL+ +K GK LI F CK RN P H W++F YC DV V I Sbjct: 119 KLAQEKDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMAIA 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++LE P+ +E + + DQ INDRG +D L + DV+ L EL++LT + Sbjct: 179 EKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG--L 236 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL G LT+ V KK + +V +++ + S++ K Sbjct: 237 DNPNSRAQLLPWLKEH-GYSANGLTK---ADVEQELKKAEGELKRVLELKLQTAMSSLKK 292 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LP 347 + AM SDGR+ G LQF GASRTGRW+G V QNL R + + + Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + VR+ ++A +G V+D + IEARV+AW AGEQW+L F T Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A+ + + WR+ + ++ + W ++ +A Sbjct: 458 -------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRA 492 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580 + I++ I K R + K L + LPSGR+L Y D G+ Y Sbjct: 493 AIKAIKSRAPIKLGKIR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIYE 546 Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 R T + TYGGKL ENIVQA +RDILAE ++ AGYD+V VHDE + E Sbjct: 547 GQGDRAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYDVVFHVHDEAIIE---G 603 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + LM P WA+GLPL +EGY +K Y K Sbjct: 604 SGLIIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|288799805|ref|ZP_06405264.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon 299 str. F0039] gi|288333053|gb|EFC71532.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon 299 str. F0039] Length = 726 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 212/697 (30%), Positives = 330/697 (47%), Gaps = 73/697 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + L ID ET S ++ G+ Y + + ++LFA+ D V+L D +P + Sbjct: 80 IKILSIDIETYSDNEI-TNGVHNYVDTPNFEILLFAYSCDGGSVQLVDLAQGEEIPAKIL 138 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL ++++ A N+ FER + L + +W CT + A GLP++L++ GE LKL Sbjct: 139 DALTDSNIIKTAFNASFERVCIGKHLGLTLDPSQWHCTQIRALMLGLPASLQSCGEVLKL 198 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 +K+ EG ELI F CK RN P H + W F YC DV V + I ++ Sbjct: 199 KHKKLREGAELIKYFSIPCKPTKSNGGRTRNLPEHAPDKWAQFKRYCIRDVEVEKAIQRK 258 Query: 175 L-----EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + P++ E+ L+ DQT+ND+G C+D LA+ ++ D + +L E++ +T Sbjct: 259 VCNNTLNPVTPFERALYIFDQTMNDKGVCIDSELANNAIRMNDEAQDELFAEMQEITN-- 316 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + + +LK WL + G ++ L + + + + + +V R +S+++V Sbjct: 317 LENPNSPVQLKQWLSSKLGRPIQSLAKEDAKELATGASED---VKRVLYLRSMSSKTSVK 373 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---L 346 K + A SD +L LQF GA +TGRW+G + NLPR S L + + Sbjct: 374 KYEAMTLAKCSDNKLHDLLQFYGA-KTGRWAGRIVQVHNLPRNSSKDLALARELVKKNDF 432 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 + + I+S +R+ IA E L V D + IEARV+AW+AGE+W+LK F Sbjct: 433 ELLELTFGNVCDILSQLIRTAFIAKENYTLCVCDFSAIEARVIAWLAGEEWRLKVFRGSG 492 Query: 407 DLYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 +Y + AR F V +T D R GK+ ELALGY+GGA A + M + Sbjct: 493 RIYEASAARMFGVDEKTITHDSPLRQKGKIAELALGYEGGANALKIMGADK--------- 543 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 ++ WR + +LW ++ Sbjct: 544 -------------------------------MGLSDPEIAQIVSGWRNSSPNIVKLWRDV 572 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG---NNRSYL- 580 +A ++ I + + I ++ + +K N L + LPSGR L Y N Y+ Sbjct: 573 ERAAKEAILSDRIIKLKQGGLI----FRKTSNILQIKLPSGRLLSYPLAKIVDNKICYMS 628 Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP-D 638 N TTRQ TYGGKL ENIVQA++RD L E ++ K GY+I VHDEI+ E P D Sbjct: 629 QNQTTRQWVDTETYGGKLVENIVQAIARDCLGETILRVDKKGYNICFHVHDEIIAEVPTD 688 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + ++ + ++A LPLK EGY + Y K Sbjct: 689 ESAKALQDIKNIFATPITFAPDLPLKGEGYITPYYLK 725 >gi|66395454|ref|YP_239831.1| ORF004 [Staphylococcus phage 2638A] gi|62635881|gb|AAX90992.1| ORF004 [Staphylococcus phage 2638A] Length = 653 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 223/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D PV D P Sbjct: 1 MKYMNIDIETYSSNDISKCGAYKYVEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + +V A N+ FER L FN ++P W CT+V GLP++L VG Sbjct: 61 YETFKIALFDPEVRKYAFNANFERVCLAQHFNKEMPPEEWTCTMVNVTRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTR 169 E L L +QK + GK LI F CK RN P H + W+ F +YC DV V Sbjct: 121 EVLNLQNQKDKAGKNLIRYFSVPCKPTKVNGGRTRNLPQHDPKKWQQFIDYCVRDVEVEM 180 Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ +EQ+ W LDQ INDRG + +L N++ + + +L ++ +T Sbjct: 181 SIATKIKDFPVTKEEQKYWSLDQHINDRGIKLSKSLMLGANELDKISKAELLKQATKITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L T +A Q+ R++ S+++ Sbjct: 241 --LENPNSPSQLLKWLNEEQGLDIPNLQKKTVQEYLKY---ATGKAKQMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M D R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCGDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELNIARDFIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLDIHPQDLLSQLVRTTFTAEEGYALAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPA--QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + A+ F V + R GKV ELALGYQGG A + M Sbjct: 415 FNTHGKIYEASAAQMFGVPVDSIKKGDPLRQKGKVSELALGYQGGPGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A++ + + + +WR+ + + Sbjct: 468 ---------------------------------ALDMGIDESELQGLVDSWRKANPNIVA 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 W A +T+ + + R K L++ LPSGRSL Y + Sbjct: 495 FWKGCQDAAIETVRTRQTHLTHGLR------FYMKKGFLMIELPSGRSLAYPKARVGENS 548 Query: 580 LNTT---------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + R+ T+ TYGGKL ENIVQA +RD+LA M AG+ IV VHD Sbjct: 549 WGSPVVEFMGLDLNRKWTKLKTYGGKLVENIVQATARDLLAISMYRIEHAGFSIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E PD + ++M+ WA+GL L ++G+ S Y K Sbjct: 609 EVIVEIPDGS-GGLKAIENIMSKPVKWAEGLKLNSDGFTSPFYMK 652 >gi|282919245|ref|ZP_06326980.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp. aureus C427] gi|282317055|gb|EFB47429.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp. aureus C427] Length = 653 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 225/705 (31%), Positives = 325/705 (46%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG+ KY AED +++ A+ D P+ D P Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ E W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L K T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KVATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+E + + +WR + + Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRS 578 W +A T+++ K R K L++ LPSGR+L Y + S Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKALVGENS 548 Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + + R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHD Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + +M WAKGL L ++G+ S Y K Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|262049890|ref|ZP_06022752.1| putative DNA polymerase [Staphylococcus aureus D30] gi|259162039|gb|EEW46619.1| putative DNA polymerase [Staphylococcus aureus D30] Length = 653 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 225/705 (31%), Positives = 325/705 (46%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG+ KY AED +++ A+ D P+ D P Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKADNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ E W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L K T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KVATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+E + + +WR + + Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRS 578 W +A T+++ K R K L++ LPSGR+L Y + S Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKALVGENS 548 Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + + R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHD Sbjct: 549 WGSQVIEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + +M WAKGL L ++G+ S Y K Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|170023450|ref|YP_001719955.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII] gi|169749984|gb|ACA67502.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII] Length = 693 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 249/697 (35%), Positives = 373/697 (53%), Gaps = 32/697 (4%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L++D ET S + G YA + ++L A+ DD PV + + +P L AL Sbjct: 4 ILWLDLETYSETPIRN-GTHAYAANAEIMLIAWAIDDGPVSVHEFTEPKNLPVPLCTALR 62 Query: 63 NTDVTIVAHNSYFERTVLKACFN-LDIP------IHRWICTLVLARSNGLPSALKAVGEA 115 + + + AHNS F+RTVL+ P + RW T+V A ++GLP +L + + Sbjct: 63 DGETLVYAHNSQFDRTVLRTHLKSYKWPNVAARDVTRWRDTMVKALAHGLPGSLSDLCDI 122 Query: 116 LKL--SSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIF 172 L + K + GK LI FCK R K H E W+ F +Y D+ REI Sbjct: 123 LGVAQDKAKDKAGKALIQLFCKPRAKNSAIRRATKQTHPEEWKRFIDYAGLDIEAMREID 182 Query: 173 KRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 K+L + + EL W+ DQ INDRG +D LA V++E+ +L + LT V Sbjct: 183 KKLPVWNYQSNELALWHFDQRINDRGVQMDTVLAEAAVSAVEIEQKRLAVRTQDLTDNEV 242 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++ + L + G+ L D+ +T QR +S L + ++ R++AS ++ K Sbjct: 243 QAATQRDVLLKHIVEAFGVTLPDMQASTIQRRVSD-PDLPIELRELLAIRLQASTTSTSK 301 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 TL++ ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRP E +D I L Sbjct: 302 YKTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLGQETIDTGIEALKAGC 361 Query: 351 TS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG--- 405 + +++IS +R C++A EGKKLVV+DL+ IE R L W++GE+WKL+AF Sbjct: 362 ADLLFDNVMELISSALRGCIVAPEGKKLVVSDLSNIEGRALVWLSGEEWKLQAFRDYDAG 421 Query: 406 --EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 DLY+ YAR+FN++P V K QR IGKVMEL LG+ GG AF A GL+L+ A Sbjct: 422 TGHDLYMLAYARAFNISPDNVDKIQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDGLA 481 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 N +A+++ + + + + + AC+ +K+ WR H + W E Sbjct: 482 KAALPNVPASIQREAQSWYKASVKQKRTYGLSEQVFI-ACDSLKRMWRNAHPKTVSFWYE 540 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG---NNRSYL 580 + + I + ++ + ++D + L + LPSGR++ Y + SY+ Sbjct: 541 IEDTVRRAIAAPRQTFTCRKLKI-----RRDGSWLRIQLPSGRAVCYPGIRIDEGKISYM 595 Query: 581 --NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 N+ +R+ R TYGGKLTEN+ QA +RD++A M +GY+I LTVHDE++ E PD Sbjct: 596 GINSYSRKWQRLKTYGGKLTENVTQAAARDVMANNMPLIETSGYEITLTVHDEVLTEAPD 655 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 T++F + L L+ +NP WA LPL A G+E+ YRK Sbjct: 656 TEQFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 692 >gi|66395659|ref|YP_240050.1| ORF003 [Staphylococcus phage 47] gi|282911107|ref|ZP_06318909.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|297207805|ref|ZP_06924239.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|62636083|gb|AAX91194.1| ORF003 [Staphylococcus phage 47] gi|282324802|gb|EFB55112.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|296887521|gb|EFH26420.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|312438063|gb|ADQ77134.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH60] gi|329724432|gb|EGG60942.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21189] Length = 653 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 224/705 (31%), Positives = 322/705 (45%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L SQK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ E W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+E + + +WR + + Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRS 578 W +A T+++ K R K L++ LPSGR+L Y + S Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKALVGENS 548 Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + + R+ ++ TYGGKL ENIVQA +RD+LA + G+ IV VHD Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + +M WAKGL L ++G+ S Y K Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|266623807|ref|ZP_06116742.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM 13479] gi|288864379|gb|EFC96677.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM 13479] Length = 656 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 213/703 (30%), Positives = 309/703 (43%), Gaps = 76/703 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ETRS ID+ K G KYA+ D ++LFA+ +++ PV++ D + +P L Sbjct: 1 MHHLSIDIETRSSIDIGKAGAYKYAQSPDFEILLFAYQWNNDPVKVIDLKNGEELPCWLM 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL + +V A+N+ FE L C + PI +W CT+ G + L A G+A+ L Sbjct: 61 QALADPNVIKHAYNAAFEWYCL-NCAGYETPIEQWRCTMAHGLYCGYTAGLDATGKAIGL 119 Query: 119 --SSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 QK+ GK LI FC K N+P H + W LF EYC DV REI Sbjct: 120 PQDKQKLTTGKALIRYFCVPCKPTKTNGSRTWNQPWHDTDKWELFKEYCLQDVVTEREIL 179 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 KRL+ P+ +E+ LW +D +N G VD L I + +L E SLT Sbjct: 180 KRLDLFPMPEEEEHLWQMDVLMNAYGVRVDTDLIEGALYIDQISTQRLTDEAISLTGLQ- 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL G ++L + T +L + ++ R + ++++ K Sbjct: 239 -NPNSAAQLLQWLRD-NGTEADNLQKATVAELLGGI--NPNKVRRMLEIRQQLGKTSIKK 294 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348 + A R+RG Q+ GA+RTGRW+G + QNLPR + + + Sbjct: 295 YVAMDTARGEGDRVRGLTQYYGANRTGRWAGRLVQMQNLPRNYLKTLDYARNLVKAKNYD 354 Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + +S +R+ I S G K VVAD + IEARV+AW+AGEQW + F T Sbjct: 355 GVRILYGNVPDTLSQLIRTAFIPSAGHKFVVADFSAIEARVIAWLAGEQWVNEVFATHGK 414 Query: 408 LYVTTYARSFNVAPAQVTKD-----QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 +Y T ++ F V ++ K R GKV LALGYQGG A M Sbjct: 415 IYEATASQMFGVPVERIAKGNPEYSLRQKGKVATLALGYQGGTSALIAMG---------- 464 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A++ + + WRQ + R+ LW Sbjct: 465 ------------------------------ALQMGLTEEELPDIVQRWRQANPRIKGLWY 494 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSY- 579 + A +E + + ++ L + LPSGR L Y + NR Sbjct: 495 AIENAALAVMETAQPQGINGLIFALEGDIIYGQSFLTVRLPSGRKLFYPKPFLKENRFEK 554 Query: 580 -------LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + TR+ TYGGK+ ENIVQA++RD LA + G +V VHDE+ Sbjct: 555 MAVHYYTVGQQTRKWEVTSTYGGKMVENIVQAIARDCLAVTLERIASKGLQVVFHVHDEV 614 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + P E + LM WA GL LK G+ES Y K Sbjct: 615 IIDAP--METTVEEICDLMAEPIPWAPGLVLKGAGFESSYYMK 655 >gi|330862112|emb|CBX72276.1| putative DNA polymerase [Yersinia enterocolitica W22703] Length = 699 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 256/704 (36%), Positives = 373/704 (52%), Gaps = 38/704 (5%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L+ D ET + K G YAE V V++ + +D PV WD MP+ LK L Sbjct: 3 KKLWFDSETFCETPI-KNGTHAYAEHVEVMIITYALNDDPVSEWDITSGAKMPEDLKAYL 61 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIH--RWICTLVLARSNGLPSALKAVGEALKL- 118 ++ + I A NS+F+RT+++ I RW T+V A ++GLP L + E L + Sbjct: 62 QDPSIEIYAQNSHFDRTMMRHDMPSVIAGGIERWRDTMVKALAHGLPGGLGVLCEILGIT 121 Query: 119 -SSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 K +EGK LI FCK R H E W+ F +Y D+ R I K+L Sbjct: 122 QDKAKDKEGKALIQLFCKPRAKNSTIHRATSKTHPEEWKRFLKYAGNDIEAMRAIDKKLP 181 Query: 177 PLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + + +EL W+ DQ INDRG +D LA V E+ L + ++LT V ++ Sbjct: 182 VWNYQGKELALWHFDQLINDRGVQMDTVLAEAAVTAVVDEQKLLAKRTQNLTDNEVQAAT 241 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 + L + G+ L D+ ++T +R ++ +L ++ R++AS ++ K TL Sbjct: 242 QRDALLRHIVESFGVDLPDMQKSTLERRIAD-PELPSVLRELLAIRLQASTTSTSKYKTL 300 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS-- 352 ++ ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRP E +D I L Sbjct: 301 LKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLDQETIDTGIEALKAGCADLL 360 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG------- 405 + +++IS +R C++A +GKKLVV+DL+ IE RVLAW+AGE+WKL+AF Sbjct: 361 FDNVMELISSALRGCIVAPKGKKLVVSDLSNIEGRVLAWLAGEEWKLEAFRDYDTIIGYD 420 Query: 406 ---------EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 DLY YAR+FN++P VTK QR IGKVMEL LG+ GG AF A G Sbjct: 421 EGGEALREGPDLYKLAYARAFNISPDDVTKLQRQIGKVMELGLGFGGGVAAFLTFALVYG 480 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L+L+ A+ N +A+++ + + + + AC+ +K+ WR H Sbjct: 481 LDLDELANAALPNVPTSIQREAQSWYQASVKQKRTFGLSEQVFI-ACDSLKRMWRNAHPE 539 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--- 573 W+E+ + I N K ++ + ++D + L + LPSGRS+ Y + Sbjct: 540 TVSFWSEIENTVRRAIINPKQTFVCRKLKI-----RRDGSWLRIQLPSGRSVCYPGIRIE 594 Query: 574 GNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 G+ SY+ NT +R+ R TYGGKL EN QA +RD++A M GY+I LTVHDE Sbjct: 595 GDKISYMGVNTYSRKWQRLKTYGGKLAENATQAAARDVMANNMPLIEARGYEITLTVHDE 654 Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++ E PDTD F + L L+ +NP WA LPL A G+E+ YRK Sbjct: 655 VLTEAPDTDAFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 698 >gi|282926447|ref|ZP_06334079.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102] gi|282591776|gb|EFB96847.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102] Length = 653 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 222/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ + EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL + GL + +L + T Q K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+E + + +WR + + Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578 W +A T+++ K R K L++ LPSGR+L Y S Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548 Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + + R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHD Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + +M WA+GL L ++G+ S Y K Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVEWAEGLNLNSDGFTSPFYMK 652 >gi|329730633|gb|EGG67018.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21193] Length = 653 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 224/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ E W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIAHKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+E + + +WR + + Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578 W +A T+++ K R K L++ LPSGR+L Y S Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548 Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + + R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHD Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + +M WAKGL L ++G+ S Y K Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|148267473|ref|YP_001246416.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH9] gi|150393526|ref|YP_001316201.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH1] gi|147740542|gb|ABQ48840.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH9] gi|149945978|gb|ABR51914.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH1] Length = 653 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 223/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ + EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL + GL + +L + T Q K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+E + + +WR + + Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578 W +A T+++ K R K L++ LPSGR+L Y S Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548 Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + + R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHD Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + +M WAKGL L ++G+ S Y K Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|258448861|ref|ZP_05696971.1| DNA polymerase [Staphylococcus aureus A6224] gi|257857898|gb|EEV80789.1| DNA polymerase [Staphylococcus aureus A6224] Length = 653 Score = 475 bits (1223), Expect = e-131, Method: Composition-based stats. Identities = 222/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT++ + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMINSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ + EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL + GL + +L + T Q K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+E + + +WR + + Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578 W +A T+++ K R K L++ LPSGR+L Y S Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548 Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + + R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHD Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + +M WAKGL L ++G+ S Y K Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|21283154|ref|NP_646242.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2] gi|300911890|ref|ZP_07129333.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH70] gi|21204594|dbj|BAB95290.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2] gi|300886136|gb|EFK81338.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH70] gi|315197712|gb|EFU28046.1| DNA polymerase [Staphylococcus aureus subsp. aureus CGS01] Length = 653 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 223/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ + EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL + GL + +L + T Q K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+E + + +WR + + Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578 W +A T+++ K R K L++ LPSGR+L Y S Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGVR------FYMKKGFLMIELPSGRALAYPKASVGENS 548 Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + + R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHD Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + +M WAKGL L ++G+ S Y K Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|257428253|ref|ZP_05604651.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322] gi|258419942|ref|ZP_05682901.1| DNA polymerase [Staphylococcus aureus A9719] gi|282905878|ref|ZP_06313733.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260] gi|282928293|ref|ZP_06335897.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765] gi|257275094|gb|EEV06581.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322] gi|257844067|gb|EEV68457.1| DNA polymerase [Staphylococcus aureus A9719] gi|282331170|gb|EFB60684.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260] gi|282591964|gb|EFB96997.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765] Length = 653 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 223/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ + EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL + GL + +L + T Q K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+E + + +WR + + Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578 W +A T+++ K R K L++ LPSGR+L Y S Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548 Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + + R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHD Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + +M WAKGL L ++G+ S Y K Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|262053228|ref|ZP_06025380.1| putative DNA polymerase [Staphylococcus aureus 930918-3] gi|259158878|gb|EEW43970.1| putative DNA polymerase [Staphylococcus aureus 930918-3] Length = 653 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 223/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ + EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL + GL + +L + T Q K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+E + + +WR + + Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578 W +A T+++ K R K L++ LPSGR+L Y S Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYIKKGFLMIELPSGRALAYPKASVGENS 548 Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + + R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHD Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + +M WAKGL L ++G+ S Y K Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|49485814|ref|YP_043035.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MSSA476] gi|49244257|emb|CAG42684.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MSSA476] Length = 653 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 223/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ + EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIANKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKAEQGLDIPNLQKKTVQDYLKR---ATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M +D R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCNDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+E + + +WR + + Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578 W +A T+++ K R K L++ LPSGR+L Y S Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548 Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + + R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHD Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + +M WAKGL L ++G+ S Y K Sbjct: 609 EVIVEIPKDS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|257432437|ref|ZP_05608800.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410] gi|257283316|gb|EEV13448.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410] Length = 653 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 223/705 (31%), Positives = 324/705 (45%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ + EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL + GL + +L + T Q K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKNDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+E + + +WR + + Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRS 578 W +A T+++ K R K L++ LPSGR+L Y + S Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKALVGENS 548 Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + + R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHD Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + +M WAKGL L ++G+ S Y K Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|297590990|ref|ZP_06949628.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MN8] gi|297575876|gb|EFH94592.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MN8] Length = 653 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 222/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AE+ +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ + EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL + GL + +L + T Q K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLNNDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+E + + +WR + + Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578 W +A T+++ K R K L++ LPSGR+L Y S Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548 Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + + R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHD Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + +M WAKGL L ++G+ S Y K Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|284024530|ref|ZP_06378928.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 132] Length = 653 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 224/705 (31%), Positives = 324/705 (45%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG+ KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDTEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKYFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ E W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L K T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KVATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+E + + +WR + + Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRS 578 W +A T+++ K R K L++ LPSGR+L Y + S Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKALVGENS 548 Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + + R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHD Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + +M WAKGL L ++G+ S Y K Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|237738628|ref|ZP_04569109.1| DNA polymerase [Fusobacterium sp. 2_1_31] gi|229424111|gb|EEO39158.1| DNA polymerase [Fusobacterium sp. 2_1_31] Length = 656 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 216/703 (30%), Positives = 321/703 (45%), Gaps = 76/703 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +D+ K G KYA +D ++LFA+ D V++ D +P + Sbjct: 1 MRTLNIDIETFSSVDIGKSGAYKYAMSDDFQILLFAYSVDGQDVKIIDLAQGEAIPGEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 + L++ A+N+ FE L ++ P+ +W CT+V G + L A+G A+ L Sbjct: 61 DLLKDETCIKYAYNAVFEWWCL-NMAGIETPLEQWHCTMVHGLYCGYTAGLAAIGNAMGL 119 Query: 119 --SSQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 +K+ G LI FC RN P+H E W LF EYC DV EI Sbjct: 120 PQDKKKLTTGSALIRYFCIPCNPTKSNGNRTRNLPHHAPEKWELFKEYCIQDVVTEMEIG 179 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +RL P+ +E +LW LD +N G VD L + I + R L +E +T + Sbjct: 180 RRLSAFPVPEREWKLWVLDTFMNAYGVRVDSELVNGALYIDALSRANLLEEARDIT--KL 237 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL E G +E+L + T +++ + +A +V R S+++V K Sbjct: 238 DNPNSTSQLLNWL-EEAGEEVENLQKATVGKMIDTLDD--GKAKRVLEIRQELSKTSVKK 294 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + EAM D R+RG LQF GA+RTGR++G + QNLPR ++ + + Sbjct: 295 YKAMDEAMCKDERVRGLLQFYGANRTGRYAGRLVQVQNLPRNYIETLDVARDVIKKGDGE 354 Query: 351 T---SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + +S +R+ I SEG VV+D + IEARV+AW+AGE+W+++ F+T Sbjct: 355 LLEMLYGNIPDTLSQLIRTAFIPSEGNHFVVSDFSAIEARVIAWLAGEEWRMEVFKTHGK 414 Query: 408 LYVTTYARSFNVAPA-----QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 +Y + ++ F V + RA GKV ELALGYQG A M + Sbjct: 415 IYEASASQMFGVPINTIAKGEENYHLRAKGKVAELALGYQGSVGALTAMGAA-------- 466 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + + + WR+ R+ ELW Sbjct: 467 --------------------------------DMGLTDEEMKDIVDRWRKSSKRIVELWY 494 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR----- 577 L A + +E G+ I + + ++ + LPSGR L Y Sbjct: 495 ALENAAVEVLETGEPQIVKCVKLAKEYDFIYGQDFFTIELPSGRKLFYPKPFLKENQFGQ 554 Query: 578 -----SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 +N TT++ TYGGKLTENIVQA++RD LAE ++ G+ IV VHDEI Sbjct: 555 MQMHYMGINQTTKKWEVIPTYGGKLTENIVQAIARDCLAETLLRVKAKGWPIVFHVHDEI 614 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + P + E + MT SWAKGL L A G+ Y K Sbjct: 615 ILDVPKSVE--LEEVIKTMTEEISWAKGLILNAAGFTGSYYMK 655 >gi|156603970|ref|YP_001429916.1| hypothetical protein SPTP3102_gp21 [Staphylococcus phage tp310-2] gi|154818056|gb|ABS87483.1| hypothetical protein [Staphylococcus phage tp310-2] Length = 650 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 224/700 (32%), Positives = 320/700 (45%), Gaps = 83/700 (11%) Query: 6 IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58 ID ET S D++KCG KY AED +++ A+ D + D P + K Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L+L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 SQK + GK LI F CK RN P H E W+ F +YC DV V I + Sbjct: 123 QSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIANK 182 Query: 175 LEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ E W DQ INDRG + +L N + + +L ++ + +T + + Sbjct: 183 IKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--LEN 240 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L WL E GL + +L + T Q K+ T +A ++ R++ S+++V K N Sbjct: 241 PNSPTQLLAWLKDEQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTSVKKYN 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356 Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------------ 464 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 A+E + + +WR + + W Sbjct: 465 ----------------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKAC 496 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRSYLNTT 583 +A T+++ K R K L++ LPSGR+L Y + S+ + Sbjct: 497 QEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKALVGENSWGSQV 550 Query: 584 --------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R+ ++ TYGGKL ENIVQA +RD+LA + GY IV VHDE++ E Sbjct: 551 VEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGYKIVGHVHDEVIVE 610 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + +M WAKGL L ++G+ S Y K Sbjct: 611 IPRGS-NGLKEIETIMNKPVEWAKGLNLNSDGFTSPFYMK 649 >gi|315128370|gb|EFT84381.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus CGS03] Length = 653 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 223/705 (31%), Positives = 325/705 (46%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDDEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ + EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ + EG +L V+D + IEARV+AW A E+W+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKERWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+E + + +WR + + Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578 W +A T+++ K R K L++ LPSGR+L Y S Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548 Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + + R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHD Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + +M WAKGL L ++G+ S Y K Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|66395591|ref|YP_239981.1| ORF003 [Staphylococcus phage 3A] gi|62635937|gb|AAX91048.1| ORF003 [Staphylococcus phage 3A] Length = 650 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 224/700 (32%), Positives = 322/700 (46%), Gaps = 83/700 (11%) Query: 6 IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58 ID ET S D++KCG+ KY AED +++ A+ D P+ D P + K Sbjct: 3 IDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHADYETFK 62 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L+L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 +QK + GK LI F CK RN P H E W+ F +YC DV V I + Sbjct: 123 QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIANK 182 Query: 175 LEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ E W DQ INDRG + +L N + + +L ++ + +T + + Sbjct: 183 IKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--LEN 240 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L WL E GL + +L + T Q L K T +A ++ R++ S+++V K N Sbjct: 241 PNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KVATGKAKKMLEIRLQMSKTSVKKYN 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356 Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------------ 464 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 A+E + + +WR + + W Sbjct: 465 ----------------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKAC 496 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRSYLNTT 583 +A T+++ K R K L++ LPSGR+L Y + S+ + Sbjct: 497 QEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKALVGENSWGSQV 550 Query: 584 --------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R+ ++ TYGGKL ENIVQA +RD+LA + G+ IV VHDE++ E Sbjct: 551 VEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHDEVIVE 610 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + +M WAKGL L ++G+ S Y K Sbjct: 611 IPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|49483719|ref|YP_040943.1| DNA polymerase [Staphylococcus aureus subsp. aureus MRSA252] gi|49241848|emb|CAG40540.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MRSA252] Length = 653 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 222/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AE+ +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ + EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL + GL + +L + T Q K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKNDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+E + + +WR + + Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578 W +A T+++ K R K L++ LPSGR+L Y S Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548 Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + + R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHD Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + +M WAKGL L ++G+ S Y K Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|29028629|ref|NP_803318.1| DNA polymerase A domain [Staphylococcus phage phi 12] gi|88195276|ref|YP_500079.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|258428683|ref|ZP_05688217.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299] gi|18920553|gb|AAL82293.1| DNA polymerase A domain [Staphylococcus phage phi 12] gi|87202834|gb|ABD30644.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|257849738|gb|EEV73702.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299] Length = 650 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 223/700 (31%), Positives = 320/700 (45%), Gaps = 83/700 (11%) Query: 6 IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58 ID ET S D++KCG KY AED +++ A+ D + D P + K Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L+L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 SQK + GK LI F CK RN P H E W+ F +YC DV V I + Sbjct: 123 QSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIANK 182 Query: 175 LEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ E W DQ INDRG + +L N + + +L ++ + +T + + Sbjct: 183 IKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--LEN 240 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L WL E GL + +L + T Q K+ T +A ++ R++ S+++V K N Sbjct: 241 PNSPTQLLAWLKDEQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTSVKKYN 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356 Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------------ 464 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 A+E + + +WR + + W Sbjct: 465 ----------------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKAC 496 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRSYLNTT 583 +A T+++ K R K L++ LPSGR+L Y + S+ + Sbjct: 497 QEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKALVGENSWGSQV 550 Query: 584 --------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R+ ++ TYGGKL ENIVQA +RD+LA + G+ IV VHDE++ E Sbjct: 551 VEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHDEVIVE 610 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + +M WAKGL L ++G+ S Y K Sbjct: 611 IPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|238018841|ref|ZP_04599267.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748] gi|237864607|gb|EEP65897.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748] Length = 644 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 217/695 (31%), Positives = 311/695 (44%), Gaps = 75/695 (10%) Query: 3 TLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 L ID ET S + K G +Y +D ++LFA+ FDD PVE+ D +P+ + +A Sbjct: 2 ELSIDVETYSDCPI-KYGAQRYVDDTTFEILLFAYSFDDEPVEVIDMT-KDPLPERVVDA 59 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L N ++T A N+ FE LK F D W CT VLA LP++L V +AL+L Sbjct: 60 LYNKEITKTAFNAAFEMLCLKKYFP-DADYTNWECTSVLALYCSLPASLDNVSKALRLGE 118 Query: 121 QKMEEGKELIARFC---KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR--L 175 K GK LI F K + E W + EY + DV V R I KR Sbjct: 119 AKDARGKRLIQFFSVPRKPTKTNPKTRNMPEDAPEKWAEYIEYNRQDVVVERAIRKRLLS 178 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + E E W LDQ IN RG VD+ L D + + + LT + + Sbjct: 179 LKPPAIEHEYWLLDQDINWRGVKVDMELVDAALACNDEIVEEATESSKILTG--LENPNS 236 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 +LK WL G LE + + +L+ + +V NR S++ K + Sbjct: 237 TMQLKEWLTARLGYDLETMRKDDVSNLLAQ--DIPSDVRKVLQNRQVLGNSSIKKYLAMK 294 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTSITS 352 A+ SDGR+ G LQF GA R+GRW+G V QNLPR + + + + Sbjct: 295 NAVCSDGRIHGMLQFYGAMRSGRWAGRVVQLQNLPRNYLEDLDTARDVLKSRDVEMLDLL 354 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +P +I +R+ ++A +G + +VAD + IEARV+AW+A E+W+ F G D+Y + Sbjct: 355 YGNPGDVIKQLIRTALVAEDGHRFIVADFSAIEARVIAWLAHEKWRQDVFAQGGDIYCAS 414 Query: 413 YARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 + F+V + R GKV ELALGY GG A + M S + Sbjct: 415 ASSMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVGAMKAMDSKGEIPE----------- 463 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + +AWRQ R+++ W + A +Q Sbjct: 464 ------------------------------KELPGIIEAWRQASPRITKFWKDADSAAKQ 493 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRS--------YL 580 + G+ + R + K K L + LPSGR L Y +G N+ + Sbjct: 494 VVRTGEPV----RIIQGNIKFFKSKGFLFIELPSGRRLAYARPRLGLNQFGSESIEYDGM 549 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 + R TYGGKL ENIVQAV+RD LA M+ +KAGY IV +HDE+V E P Sbjct: 550 DQVKNTWGRVETYGGKLVENIVQAVARDCLAASMLRLSKAGYKIVAHIHDEVVIEAPIG- 608 Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + +M W +GL L A G+E+ Y K Sbjct: 609 VGSLEEVIDIMCEPEPWNEGLILNAAGFENPYYMK 643 >gi|258445211|ref|ZP_05693406.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300] gi|257855972|gb|EEV78892.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300] Length = 653 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 223/705 (31%), Positives = 325/705 (46%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ + EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ + EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+E + + +WR + + Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578 W +A T+++ K R K L++ LPSGR+L Y S Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548 Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + + R+ ++ TYGGKL ENIVQA +R++LA + +G+ IV VHD Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARELLAISIARLEASGFKIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + +M WAKGL L ++G+ S Y K Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|87161801|ref|YP_494120.1| phage related DNA polymerase family A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161509702|ref|YP_001575361.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848501|ref|ZP_06789247.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754] gi|87127775|gb|ABD22289.1| phage related DNA polymerase, family A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160368511|gb|ABX29482.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294824527|gb|EFG40950.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754] gi|302333141|gb|ADL23334.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JKD6159] gi|320140648|gb|EFW32502.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA131] gi|320142780|gb|EFW34583.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA177] Length = 650 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 222/700 (31%), Positives = 321/700 (45%), Gaps = 83/700 (11%) Query: 6 IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58 ID ET S D++KCG KY AED +++ A+ D + D P + K Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L+L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 +QK + GK LI F CK RN P H E W+ F +YC DV V I + Sbjct: 123 QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIAHK 182 Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ + EQ W DQ INDRG + +L N + + +L + + +T + + Sbjct: 183 IKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG--LEN 240 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L WL + GL + +L + T Q K+ T +A ++ R++ S+++V K N Sbjct: 241 PNSPTQLLAWLKDDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTSVKKYN 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356 Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------------ 464 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 A+E + + +WR + + W Sbjct: 465 ----------------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKAC 496 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTT 583 +A T+++ K R K L++ LPSGR+L Y S+ + Sbjct: 497 QEAAINTVKSRKTHHTHGVR------FYMKKGFLMIELPSGRALAYPKASVGENSWGSQV 550 Query: 584 --------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHDE++ E Sbjct: 551 VEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVE 610 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + +M WAKGL L ++G+ S Y K Sbjct: 611 IPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|295407651|ref|ZP_06817440.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819] gi|297246752|ref|ZP_06930567.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796] gi|294967465|gb|EFG43505.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819] gi|297176378|gb|EFH35651.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796] Length = 650 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 222/700 (31%), Positives = 321/700 (45%), Gaps = 83/700 (11%) Query: 6 IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58 ID ET S D++KCG KY AED +++ A+ D + D P + K Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L+L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 +QK + GK LI F CK RN P H E W+ F +YC DV V I + Sbjct: 123 QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIAHK 182 Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ + EQ W DQ INDRG + +L N + + +L + + +T + + Sbjct: 183 IKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG--LEN 240 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L WL + GL + +L + T Q K+ T +A ++ R++ S+++V K N Sbjct: 241 PNSPTQLLAWLKDDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTSVKKYN 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356 Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------------ 464 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 A+E + + +WR + + W Sbjct: 465 ----------------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKAC 496 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTT 583 +A T+++ K R K L++ LPSGR+L Y S+ + Sbjct: 497 QEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENSWGSQV 550 Query: 584 --------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHDE++ E Sbjct: 551 VEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVE 610 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + +M WAKGL L ++G+ S Y K Sbjct: 611 IPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|215401125|ref|YP_002332380.1| putative DNA polymerase [Staphylococcus phage phiSauS-IPLA35] gi|215260476|gb|ACJ64606.1| gp17 [Staphylococcus phage phiSauS-IPLA35] Length = 650 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 226/700 (32%), Positives = 325/700 (46%), Gaps = 83/700 (11%) Query: 6 IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58 ID ET S D++KCG KY AED +++ A+ D + D P + K Sbjct: 3 IDIETYSNNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + DV A N+ FERT L FN +P WICT+V + GLP++L VGE L+L Sbjct: 63 IALFDPDVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 +QK + GK LI F CK RN P H E W+ F +YC DV V I + Sbjct: 123 QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIANK 182 Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ + EQ W DQ INDRG + +L N + + +L ++ + +T + + Sbjct: 183 IKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--LEN 240 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++V K N Sbjct: 241 PNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKDQRFD 356 Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 +Y + ++ FNV +TK R GKV ELALGYQGGA A + M Sbjct: 417 KIYEASASQMFNVPVESITKGDSLRQKGKVSELALGYQGGAGALKAMG------------ 464 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 A+E + + +WR + + W Sbjct: 465 ----------------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKAC 496 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTT 583 +A T+++ K R K L++ LPSGR+L Y S+ + Sbjct: 497 QEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENSWGSQV 550 Query: 584 --------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHDE++ E Sbjct: 551 VEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVE 610 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + +M WAKGL L ++G+ S Y K Sbjct: 611 IPKDS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|209363571|ref|YP_002267989.1| DNA polymerase [Staphylococcus phage phi2958PVL] gi|208973072|dbj|BAG74388.1| DNA polymerase [Staphylococcus phage phi2958PVL] Length = 650 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 222/700 (31%), Positives = 321/700 (45%), Gaps = 83/700 (11%) Query: 6 IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58 ID ET S D++KCG KY AED +++ A+ D + D P + K Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L+L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 +QK + GK LI F CK RN P H E W+ F +YC DV V I + Sbjct: 123 QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIAHK 182 Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ + EQ W DQ INDRG + +L N + + +L + + +T + + Sbjct: 183 IKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG--LEN 240 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L WL + GL + +L + T Q K+ T +A ++ R++ S+++V K N Sbjct: 241 PNSPTQLLAWLKDDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTSVKKYN 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356 Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------------ 464 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 A+E + + +WR + + W Sbjct: 465 ----------------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKAC 496 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTT 583 +A T+++ K R K L++ LPSGR+L Y S+ + Sbjct: 497 QEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENSWGSQV 550 Query: 584 --------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHDE++ E Sbjct: 551 VEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVE 610 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + +M WAKGL L ++G+ S Y K Sbjct: 611 IPRGS-NGLKEIETIMNKPADWAKGLNLNSDGFTSPFYMK 649 >gi|323440323|gb|EGA98037.1| phage related DNA polymerase family A [Staphylococcus aureus O11] Length = 650 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 224/700 (32%), Positives = 321/700 (45%), Gaps = 83/700 (11%) Query: 6 IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58 ID ET S D++KCG KY AED +++ A+ D + D P + K Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPVHADYETFK 62 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L+L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 SQK + GK LI F CK RN P H E W+ F +YC DV V I + Sbjct: 123 QSQKDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVEVEMTIANK 182 Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ EQ W DQ INDRG + +L N + + +L ++ + +T + + Sbjct: 183 IKDFPVTEIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--LEN 240 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++V K N Sbjct: 241 PNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356 Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------------ 464 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 A+E + + +WR + + W Sbjct: 465 ----------------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKAC 496 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTT 583 +A T+++ K R K L++ LPSGR+L Y S+ + Sbjct: 497 QEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENSWGSQV 550 Query: 584 --------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R+ ++ TYGGKL ENIVQA +RD+LA + + + IV VHDE++ E Sbjct: 551 VEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASVFKIVGHVHDEVIVE 610 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + +M WAKGL L ++G+ S Y K Sbjct: 611 IPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|225405823|ref|ZP_03761012.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme DSM 15981] gi|225042637|gb|EEG52883.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme DSM 15981] Length = 668 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 212/708 (29%), Positives = 305/708 (43%), Gaps = 80/708 (11%) Query: 3 TLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE- 59 L ID ETRS +D++K G +YA+ D ++LFA+ +DD PVE+ D D P + E Sbjct: 5 HLSIDIETRSSVDISKAGAYRYAQSPDFEILLFAYQWDDGPVEVIDLTADESFPPEIWEE 64 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL- 118 AL + DV A+N+ FE L P+ +W CT+ G + L A G+A+ L Sbjct: 65 ALRDPDVIKHAYNAAFEWYCLNRA-GYATPLDQWRCTMAHGLYCGYTAGLDATGKAIGLP 123 Query: 119 -SSQKMEEGKELIARFC---KGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFK 173 QK+ GK LI FC K N+P + + W LF EYC+ DV EI + Sbjct: 124 QDKQKLAVGKALIRYFCVPCKPTKSNGGRTWNQPRHDPDKWTLFKEYCRQDVVTEHEILR 183 Query: 174 RLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 RL P+ E+ LW LD +N G VD L + +V KL E LT + Sbjct: 184 RLNFFPMPEDEERLWQLDVAMNAYGVRVDTKLIAGALYVDEVSTEKLTAEAVELTG--LD 241 Query: 232 SSRCLEKLKTWLFLETGLHLED------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + +L W+ H +D L + T + L L ++ R + + Sbjct: 242 NPNSGAQLVPWINAHNKEHPDDPDLLADLRKETVEEALKDRDNLPEDVARMLEIRQQLGK 301 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 ++V K + A R+RG Q+ GA+RTGRW+G + QNLPR + + + Sbjct: 302 TSVKKYVAMDVARGEGDRVRGLTQYYGANRTGRWAGRLVQLQNLPRNYLKTLDYARELVK 361 Query: 346 LPT---SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 + +S +R+ I SEG K VVAD + IEAR +AW+AGEQW + F Sbjct: 362 AKNYDGLRILYGNVPDTLSQLIRTAFIPSEGHKFVVADFSAIEARAIAWLAGEQWVNEVF 421 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKD-----QRAIGKVMELALGYQGGAKAFQKMASTTGL 457 T +Y T A+ F V ++TK R GKV LALGYQG A M Sbjct: 422 ATHGKIYEATAAQMFGVPVERITKGNPEYSLRQKGKVATLALGYQGSTAALIAMG----- 476 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 A++ + WR + R+ Sbjct: 477 -----------------------------------ALKMGLTEDELPDIVTRWRNANKRI 501 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGN 575 LW + + ++ + + ++ L + LPSGR L Y + Sbjct: 502 CGLWYAVENTALRVMQTAQPQGLNGLIFALEGDLIYGQSFLTVRLPSGRKLYYPKPFLQE 561 Query: 576 NRS--------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 NR + TR+ + TYGGK+TENIVQA++RD LA + + G V Sbjct: 562 NRFGKQAIHYYAVGQQTRKWEIDSTYGGKMTENIVQAIARDCLAVTLRRIAQKGLQTVFH 621 Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDE++ + P E + LM WA GL LK G+ES Y K Sbjct: 622 VHDEVIIDAP--METTVDEICDLMAEPIPWAPGLILKGAGFESSYYMK 667 >gi|41179402|ref|NP_958711.1| Bbp42 [Bordetella phage BPP-1] gi|45569535|ref|NP_996604.1| DNA polymerase [Bordetella phage BMP-1] gi|45580786|ref|NP_996652.1| DNA polymerase [Bordetella phage BIP-1] gi|40950141|gb|AAR97707.1| Bbp42 [Bordetella phage BPP-1] Length = 688 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 270/694 (38%), Positives = 380/694 (54%), Gaps = 26/694 (3%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+TLF+D ET + + G YAE V+LFA+ D+ PV +WD MP L+ A Sbjct: 1 MSTLFLDLETYCEVPIQN-GTHAYAEKAEVLLFAYALDNGPVYVWDAASGEKMPDDLRWA 59 Query: 61 LENTDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 L + +V + AHNS+F+RTVL+ + + + RW T+V A ++ LP AL + + LK+ Sbjct: 60 LIDENVALCAHNSHFDRTVLRHAMPDYPLALPRWRDTMVKALAHSLPGALGDLCDILKVP 119 Query: 120 SQK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + GK+LI FCK R + H W F EY D+ R I ++L Sbjct: 120 TDKAKDKAGKQLIMLFCKPRPATSKLRRATRETHPAEWAKFVEYAGLDIEAMRVIDQKLP 179 Query: 177 PLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + + EL W+LDQTINDRG VD LAH + V+ + L +T G V ++ Sbjct: 180 AWNYQGTELALWHLDQTINDRGVMVDTDLAHAAIRAVERTQKVLAARTSDITLGAVQAAT 239 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 + + + GL L D+ ++T +R ++ L + ++ R++AS ++ K TL Sbjct: 240 QRDAMLRHVLAAYGLDLPDMQQSTLERRIAD-PDLPAELRELLGIRLQASTTSTSKYKTL 298 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS-- 352 + ++SDGRLRGTLQF GASRTGRW+G +F PQNLPRP + +++ I L Sbjct: 299 AKGVSSDGRLRGTLQFNGASRTGRWAGRLFQPQNLPRPVLKQDAIERGIAALKADCADLL 358 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----ED 407 + +++ S +R C++A EGKKLVVADL+ IE R++AW+AGE WKL AF D Sbjct: 359 FANVMELTSSAIRGCIVAPEGKKLVVADLSNIEGRMIAWLAGEDWKLAAFREFDDGAGPD 418 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 LY YA++F V+P V KDQR IGKVMEL LGY+GG AF A+T G++L+ A Sbjct: 419 LYKLAYAKAFAVSPDSVDKDQRQIGKVMELMLGYEGGVGAFLTGAATYGIDLDAMADAAW 478 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + +AE F W E C+ +K+ WR+ H VS W EL +A Sbjct: 479 PSIPADIIAEAEQFLAWRTEQRLGDFGLKPKTFVVCDALKRLWRRAHPAVSSFWKELEEA 538 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYL--N 581 + D + ++D L + LPSGR L Y D SY+ N Sbjct: 539 ARLAVLRPGTT-----YDCRTLKARRDGAWLRIRLPSGRFLCYPSPQLDDAGKLSYMGVN 593 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 +R+ +R TYGGKL EN+ QA SRD+LA M AGY IVL+VHDE + E D DE Sbjct: 594 QYSRKWSRLKTYGGKLAENVTQAASRDVLAANMPAIEAAGYQIVLSVHDENITEADDRDE 653 Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 F+A+ L LM +NP WA GLPL A G+E+ RYRK Sbjct: 654 FSAAHLAGLMATNPPWAAGLPLAAAGFEAYRYRK 687 >gi|268610175|ref|ZP_06143902.1| family A DNA-dependent DNA polymerase [Ruminococcus flavefaciens FD-1] Length = 654 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 198/709 (27%), Positives = 309/709 (43%), Gaps = 90/709 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+++CG+ +YAE ++L ++ D PV D +P + Sbjct: 1 MKQLTIDIETASDEDISECGVYRYAESEYFDLLLVSYSIDGGPVATVDIDSGDTLPDEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACF--------------NLDIPIHRWICTLVLARSNG 104 AL + V A N FER L I W C ++ +R G Sbjct: 61 SALTDKSVIKKAFNVNFERVCLSVYLRRNYPEIAGFEDAVGNYIAPESWHCDMIHSRYLG 120 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR--NKPNHREAWRLFGEYCK 162 + S+L +G+ L+L +K++EGK+LI FC + +K + + W+ F EY + Sbjct: 121 MMSSLDDMGKLLRLKEKKLDEGKDLIKYFCTLHQDKQGNLLFYDKSDAPKKWKEFIEYNR 180 Query: 163 GDVTVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 DV V +I + L P+ E +Y+DQ INDRG VD A ++ + +L Sbjct: 181 RDVEVELKIQRLLSEMPVPDFIWEEFYIDQRINDRGILVDTKFAEKAVELDSNVKKELFP 240 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 +L+ LT + + ++K WL + G+ + L + + +L +V Sbjct: 241 KLKELT--RLDNPNSPAQMKDWL-MRQGIEADSLDKKSMPLLL---ASAPDDVKEVLMLY 294 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + S+S+V K +T++ A DGR RG F GA+RTGR++G + QNLP+ + Sbjct: 295 QQLSKSSVSKYHTMLGASCKDGRARGMFNFYGANRTGRFAGRIIQLQNLPQNHLDNLAET 354 Query: 341 QIITH---LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + + L D ++S +R+ I EGKK VVAD + IEARV++W+AGE W Sbjct: 355 KWLIKSGDLDAVKERFEDIPDVLSQLIRTAFIPPEGKKFVVADFSAIEARVISWLAGETW 414 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +++AF GED+Y A+ F V + R GK+ ELA GY G A + M Sbjct: 415 RMEAFANGEDIYCACAAKMFGVPVEKNGVNGHLRQKGKIAELACGYGGSIGAIKAMG--- 471 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 E + + WR+ Sbjct: 472 -------------------------------------GTELNLTDDELYSLVEDWRKTSP 494 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + +LW+++ + I + ++ + + + L + LPSGR L Y Sbjct: 495 NIVKLWSDVQSVAVKVITDQSSMTFGR------LKFSYEIGILFIELPSGRRLAYVRPKV 548 Query: 576 N--------RSYLNTTT-RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 +Y ++ R TYG KL ENI Q ++RD+L M DIV Sbjct: 549 EKDDNGKTIITYEGVGDNKKWLRLETYGAKLVENITQGIARDLLLHSMAAM--KDMDIVG 606 Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDE++ E + HLM P WA+GL L+A+GYE + Y K Sbjct: 607 HVHDEVIVECDPD--TTVVQVCHLMEQTPDWAEGLLLRADGYECEFYMK 653 >gi|227872576|ref|ZP_03990912.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] gi|227841577|gb|EEJ51871.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] Length = 643 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 202/699 (28%), Positives = 299/699 (42%), Gaps = 81/699 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S ID+ K G +YA E ++LFA+ FD V++ D + +P + Sbjct: 1 MRHLSIDIETFSDIDIQKAGAYRYAQSEQFRIMLFAYSFDGEEVQVVDLENGEEIPHFIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL++ +V A+N+ FE L C + P+ +W CT+V A LP+ L GEAL + Sbjct: 61 TALQDMEVIKHAYNAAFEWYCL-NCAGIKTPLDQWQCTMVHAMYLSLPAGLANTGEALGI 119 Query: 119 SSQKMEE--GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + GK+LI FC + W+ F EY + DV EI RL Sbjct: 120 AEDKKKSAVGKQLIRYFCV---------KPYKPDAVKWKAFKEYNRQDVVSEMEIENRLS 170 Query: 177 --PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 P+ E E W D +N G VD L + +I + +L E LT + + Sbjct: 171 GFPVPELEWERWRQDIAMNAYGVKVDTELVNGAIKIQEQCEEELLNEAVRLT--QLENPN 228 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L W+ + G LE+ + T + L L + +V R + +++V K + Sbjct: 229 SPTQLLNWVNAQ-GYPLENTQKATIESALKE--DLPLKVRRVLEIRQQLGKTSVKKYEAM 285 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI---ITHLPTSIT 351 + R+RG QF GAS+TGR+SG + QNLPR + T Sbjct: 286 TNTIGEGDRVRGISQFYGASKTGRFSGRLVQMQNLPRNYLEPLAETRECVKRQDYETLKL 345 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +S +R+ I S G + VVAD + IEARV+AW+A E W + F T +Y Sbjct: 346 LFDSIPDTLSQLIRTAFIPSTGNQFVVADFSAIEARVIAWLAKETWVQEVFATHGKIYEA 405 Query: 412 TYARSFNVAPAQVTKDQRAIG-----KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 T ++ F+V ++ K KV LALGYQGG A M Sbjct: 406 TASQMFHVPIEKIAKGNPEYALRQKGKVATLALGYQGGTNALISMG-------------- 451 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 A++ + WR + R+ LW+ + Sbjct: 452 --------------------------ALKMGLSEEELPEIVTRWRAANQRIVALWSAVGS 485 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSY----- 579 +T+ +G+A +K L + LPS R L Y +G N+ Sbjct: 486 YALRTVRDGRARQVNGLIFRMEQDLKHGLRFLTIELPSKRKLFYCKPYIGLNQFGGESLY 545 Query: 580 ---LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 N TT++ T+GGKL ENIVQ ++RD L E + T GY IV VHDE++ + Sbjct: 546 FYTQNQTTKKWEESSTFGGKLVENIVQGIARDCLCETLDRITSKGYRIVFHVHDEVIVDA 605 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + L +M WAKGL LK G+ + Y+K Sbjct: 606 --GMDLTVEELCGIMAEPIPWAKGLILKGAGFSGQFYQK 642 >gi|312897720|ref|ZP_07757136.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] gi|310621104|gb|EFQ04648.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] Length = 654 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 202/700 (28%), Positives = 302/700 (43%), Gaps = 72/700 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET SP D++ G+ KY+E + ++LF++ + V + D +P + Sbjct: 1 MRHLNIDIETYSPNDIS-FGVYKYSESEEFEILLFSYAYAFGEVHVVDLASGETIPDDVV 59 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L+ +V A+N+ FE T L + +W CT++ G P L +G+AL L Sbjct: 60 LDLKRDEVIKHAYNAQFEITCLNRA-GYQTFVEQWRCTMIHGAYLGYPMGLAKLGKALGL 118 Query: 119 SSQKMEE--GKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 + KM++ G LI F CK RN P H + W + Y K DV E + Sbjct: 119 TQDKMKDKAGAALIRYFSVPCKPTKKNGGRTRNLPKHDPDKWAAYIAYNKQDVVTEMECY 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +RL P+ + ++ W +D +N G +D L I + + L +E LT + Sbjct: 179 RRLSAFPVPEEVEKQWQVDIRMNATGVGIDRQLVDGALTIDEENKKALLEEAYELTG--L 236 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 S+ +L WL T L LE LT+ + ++ A +V R + ++S+V K Sbjct: 237 SNPNSRNQLLDWLNSNTNLELEKLTKDSVA---AAMTDADDLAKKVLTIRKKLAKSSVSK 293 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348 + A DGRLRGTLQF GA+RTGRW+G + QNLPR ++ + + + Sbjct: 294 YEMMASATGQDGRLRGTLQFYGANRTGRWAGRLLQVQNLPRNYITNLDTARSLVKASNRV 353 Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 D +S +R+ +IA EG L VAD + IEARV+AW++GE W+ K F G D Sbjct: 354 GLGLLFGDVSDTLSQLIRTAIIAKEGYTLCVADFSAIEARVIAWLSGETWRQKVFAEGGD 413 Query: 408 LYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 +Y + + F V + R GKV ELALGYQGG A + M Sbjct: 414 IYCASASSMFGVPVVKHGVNGHLRQKGKVAELALGYQGGVNALKAMG------------- 460 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 A++ + WRQ + + W + Sbjct: 461 ---------------------------ALDMGLTEEELPNIVGLWRQASPNIVKFWYTVE 493 Query: 526 QAFEQTIENGKAIIA-RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS------ 578 +A T+ G + V + + LPSGR L Y D + Sbjct: 494 KAAVYTVTTGNPMTLDHGITFRLEVDPFYGYRYMTIELPSGRKLFYPDPHIKLNNFDKEA 553 Query: 579 --YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 + E TYGGKL ENI QAV+RD LA +M + G ++ +HDE V E Sbjct: 554 VHFKTQLNNAWVTESTYGGKLVENITQAVARDCLALTLMRLSGNGLPAIMHIHDEAVIEV 613 Query: 637 PDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + ++ WA+GL L A G+ + Y K Sbjct: 614 PKDEADEYLDIVEKTFALPIPWAEGLALTAAGFTNDYYMK 653 >gi|282533171|gb|ADA82280.1| putative DNA polymerase [Escherichia phage K1G] Length = 726 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 249/730 (34%), Positives = 344/730 (47%), Gaps = 59/730 (8%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M+ LF+DFET S DL K G YAE V++ + FDD PV++WDC + MP L Sbjct: 1 MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60 Query: 59 EALE-----NTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 AL N+ + +V HN F+R ++K C+ DIP+ I T++ A + LP +L A+ Sbjct: 61 RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120 Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169 E L +S+ K + GK LI RF K R H + W LF +Y D+T R Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180 Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E+F +L S E + LDQ INDRG+ VDVALA + V+ + +L +E + Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G ++ L L+ + + ++T + ++ L A + R+ A+ +A Sbjct: 241 GSLTGKDFLPILRELAPAH---RIHNAQKSTLNDL-LADDDLPDDARTIIEMRLGAASTA 296 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL- 346 K N L+ +SD R RG +Q+ GA RT R++G F PQNL R +ELD+ I+ L Sbjct: 297 STKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALL 356 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D ++ + VRSC+I G K VVAD + +E R LAW+AGE+ L F G Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416 Query: 407 DLYVTTYARSFNVAPA---QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+Y T + F + P + KD R IGK EL LGY GG AF + A GL+L A Sbjct: 417 DIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMA 476 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENH------------PEHAIEDLFIGTACERVKKAWR 511 + W W + I D + C+ +K+ WR Sbjct: 477 KTMDGTFPDYIWAATARGYEWARIQEAKRPPRPGENDDRPSYILDKKVWRTCDAIKRMWR 536 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM--------KKDKNNLILMLP 563 + H W ++ A I N R V K L + LP Sbjct: 537 ESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLP 596 Query: 564 SGRSLVYR------------------DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 SGR + Y +V N TRQ +YTY GKL EN QA+ Sbjct: 597 SGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQAL 656 Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 RD+LA ++N GY IVL VHDEI+CETPD E+N + L LM P WA+G PL A Sbjct: 657 CRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVA 716 Query: 666 EGYESKRYRK 675 EG E KRY K Sbjct: 717 EGAEMKRYAK 726 >gi|282534222|gb|ADA82330.1| putative DNA polymerase [Escherichia phage K1H] Length = 726 Score = 452 bits (1162), Expect = e-124, Method: Composition-based stats. Identities = 248/730 (33%), Positives = 343/730 (46%), Gaps = 59/730 (8%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M+ LF+DFET S DL K G YAE V++ + FDD PV++WDC + MP L Sbjct: 1 MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60 Query: 59 EALE-----NTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 AL N+ + +V HN F+R ++K C+ DIP+ I T++ A + LP +L A+ Sbjct: 61 RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120 Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169 E L +S+ K + GK LI RF K R H + W LF +Y D+T R Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180 Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E+F +L S E + LDQ INDRG+ VDVALA + V+ + +L +E + Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G ++ L L+ + + ++T + ++ L A + R+ A+ +A Sbjct: 241 GSLTGKDFLPILRELAPAH---RIHNAQKSTLNDL-LADDDLPDDARTIIEMRLGAASTA 296 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL- 346 K N L+ +SD R RG +Q+ GA RT R++G F PQNL R +ELD+ I+ L Sbjct: 297 STKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALL 356 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D ++ + VRSC+I G K VVAD + +E R LAW+AGE+ L F G Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416 Query: 407 DLYVTTYARSFNVAPA---QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+Y T + F + P + KD R IGK EL LGY GG AF + A GL+L Sbjct: 417 DIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMT 476 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENH------------PEHAIEDLFIGTACERVKKAWR 511 + W W + I D + C+ +K+ WR Sbjct: 477 KTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGENDDRPSYILDKKVWRTCDAIKRMWR 536 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM--------KKDKNNLILMLP 563 + H W ++ A I N R V K L + LP Sbjct: 537 ESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLP 596 Query: 564 SGRSLVYR------------------DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 SGR + Y +V N TRQ +YTY GKL EN QA+ Sbjct: 597 SGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQAL 656 Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 RD+LA ++N GY IVL VHDEI+CETPD E+N + L LM P WA+G PL A Sbjct: 657 CRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVA 716 Query: 666 EGYESKRYRK 675 EG E KRY K Sbjct: 717 EGAEMKRYAK 726 >gi|15837285|ref|NP_297973.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c] gi|9105565|gb|AAF83493.1|AE003912_5 phage-related DNA polymerase [Xylella fastidiosa 9a5c] Length = 726 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 270/726 (37%), Positives = 366/726 (50%), Gaps = 63/726 (8%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L+ D ET SP+ + G+ YAE ++LFA+ + PV++WDC +P L AL Sbjct: 10 ILWGDLETYSPVPMAH-GVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALH 68 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121 + V + HNS+F+RTVL +DIP+ RW ++ A ++ LP AL + E L++ + Sbjct: 69 DPAVLLYFHNSHFDRTVL-RHCGIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEH 127 Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++GK L+A FCK C R + H W F EY + DV R++ KRL + Sbjct: 128 AKDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSHN 187 Query: 180 S--KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E LW+LDQTINDRG +D L + V+ + L Q E+LT G V ++ + Sbjct: 188 YAGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQRD 247 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L L G+ L D+ + T R + + L ++ + R +AS ++ K L+ Sbjct: 248 ALLQHLNTAHGVALPDMQQHTVARCV-DDPALPETVRELLSIRRQASSTSTAKYQALLHC 306 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E + I + D Sbjct: 307 TSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKAGCVDLVFDD 366 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL------- 408 + + S +RSC+IA + KKLVVADL+ IE RVLAW+AGE KL AF + Sbjct: 367 VMALTSSALRSCLIAPKNKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDGTW 426 Query: 409 ---------------------------------YVTTYARSFNVAPAQVTKDQRAIGKVM 435 Y YA SF +AP V+K+QR IGKV Sbjct: 427 HTGAAITHGALRGAPIALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGKVQ 486 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 ELALGY GG AF A+ ++L A P + A W + NH Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMAAQAAL--PPLLLQQATELLEWTKANHRPTFDL 544 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 AC+ K+AWR H ++ W L A I + + + ++ + Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETA-----HTCCGITVQYRR 599 Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDI 609 L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+ Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRDV 659 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669 LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG++ Sbjct: 660 LAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEGLPLAAEGFD 719 Query: 670 SKRYRK 675 + RYRK Sbjct: 720 TYRYRK 725 >gi|15839115|ref|NP_299803.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c] gi|9107731|gb|AAF85323.1|AE004059_13 phage-related DNA polymerase [Xylella fastidiosa 9a5c] Length = 726 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 270/726 (37%), Positives = 366/726 (50%), Gaps = 63/726 (8%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L+ D ET SP+ + G+ YAE ++LFA+ + PV++WDC +P L AL Sbjct: 10 ILWGDLETYSPVPIAH-GVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALH 68 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121 + V + HNS+F+RTVL +DIP+ RW ++ A ++ LP AL + E L++ + Sbjct: 69 DPGVLLYFHNSHFDRTVL-RHCGIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEH 127 Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++GK L+A FCK C R + H W F EY + DV R++ KRL + Sbjct: 128 AKDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSHN 187 Query: 180 S--KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E LW+LDQTINDRG +D L + V+ + L Q E+LT G V ++ + Sbjct: 188 YAGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQRD 247 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L L G+ L D+ + T R + + L ++ + R +AS ++ K L+ Sbjct: 248 ALLQHLNTAHGVALPDMQQHTVARCV-DDPALPETVRELLSIRRQASSTSTAKYQALLHC 306 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E + I + D Sbjct: 307 TSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKADCVDLVFDD 366 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL------- 408 + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF + Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDGCW 426 Query: 409 ---------------------------------YVTTYARSFNVAPAQVTKDQRAIGKVM 435 Y YA SF +AP V+K+QR IGKV Sbjct: 427 HTGAAITHGALRAAPLALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGKVQ 486 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 ELALGY GG AF A+ ++L A P ++A W + NH Sbjct: 487 ELALGYGGGVGAFAAFAALYHIDLEAMAAQ--AVFPPLLLQEATELLEWTKANHRPTFDL 544 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 AC+ K+AWR H ++ W L A I + + + ++ + Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETT-----HTCCGITVQYRR 599 Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDI 609 L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+ Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRDV 659 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669 LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG++ Sbjct: 660 LAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEGLPLAAEGFD 719 Query: 670 SKRYRK 675 + RYRK Sbjct: 720 TYRYRK 725 >gi|83648986|ref|YP_437421.1| DNA polymerase I [Hahella chejuensis KCTC 2396] gi|83637029|gb|ABC32996.1| DNA polymerase I [Hahella chejuensis KCTC 2396] Length = 911 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 109/705 (15%), Positives = 203/705 (28%), Gaps = 162/705 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T D ET S Y E ++ +F + HD Sbjct: 332 KTFSFDTETTSLN---------YME-AEIVGVSFAVEPGKAAYVPVAHDYMGAPEQLERD 381 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111 + LK LE+ + N ++ VL + + T++ + + Sbjct: 382 KVLAALKPLLEDPAYRKIGQNLKYDAHVLANH-GVQLNGIA-EDTMLESYVLNSTAN--- 436 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + K L E + ++ + G Y D +T ++ Sbjct: 437 -----RHDMDTLAS-KHLGRETIHFEDIAGKGAKQLTFNQISLEQAGPYAAEDADITLQL 490 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + + RG VD T +Q + +L++ Sbjct: 491 HHALNPKLKKEGRLEQVYRDIELPLVPVLMRMEHRGALVDSQRLRTHSQELAERMLELEE 550 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETG----LHLEDLTETTCQRVLSSNKKLTPQAIQV 276 E + ++L+ + + G +T + VL + + Sbjct: 551 EAYEKAGQK-FNLGSPKQLQEIFYEKLGFDIIKKTPKGQPSTAEPVLQELAEKYELPRVL 609 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R S+ + L E +N T + TGR S QN+P + Sbjct: 610 LEYR-GLSKLKSTYTDKLPEMINPRTGRVHTSYQQAVAATGRLSSSDPNLQNIPVRNEQG 668 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA +G KL+ AD + IE R++A ++G++ Sbjct: 669 RR-------------------------IRQAFIAPKGCKLISADYSQIELRIMAHLSGDE 703 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 LKAF G D++ T A FNVA +V+ +QR K + G Sbjct: 704 GLLKAFSEGLDVHQATAAEVFNVAFDEVSSEQRRKAKAIN--------------FGLIYG 749 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + + + + +++ Sbjct: 750 MSAFGLARQIHVE------------------------------RSEAQSYIDKYFERYPG 779 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V N + + T + GR L D+ ++ Sbjct: 780 VLNYMNRIRAEAQDT--------------------------GYVETLFGRRLYLPDIRSS 813 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVH 629 + R +Q + DI+ M+ +++ VH Sbjct: 814 N---RNLQQAAERTAINAP------MQGTAADIIKRAMLAVDAWLEGDSAPPAKMIMQVH 864 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE++ E ++ L +M+S +PL E + Sbjct: 865 DELILEVEESAVEAVKEKLTQIMSSAAD--LNVPLLVEAGVGNNW 907 >gi|282535272|gb|ADA82478.1| putative DNA polymerase [Escherichia phage K1ind3] gi|282547373|gb|ADA82429.1| putative DNA polymerase [Escherichia phage K1ind2] Length = 726 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 248/730 (33%), Positives = 344/730 (47%), Gaps = 59/730 (8%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M+ LF+DFET S DL K G YAE V++ + FDD V++WDC MP L Sbjct: 1 MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEHVQVWDCTDGSDMPGDLH 60 Query: 59 EALE-----NTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 AL N+ + +V HN F+R ++K C+ DIP+ I T++ A + LP +L A+ Sbjct: 61 RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120 Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169 E L +S+ K + GK LI RF K R H + W LF +Y D+T R Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180 Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E+F +L S E + LDQ INDRG+ VDVALA + V+ + +L +E + Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G ++ L L+ + + ++T + ++ L A + R+ A+ +A Sbjct: 241 GSLTGKDFLPILRELAPAH---RIHNAQKSTLNDL-LADDDLPDDARTIIEMRLGAASTA 296 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL- 346 K N L+ +SD R RG +Q+ GA RT R++G F PQNL R +ELD+ I+ L Sbjct: 297 STKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALL 356 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D ++ + VRSC+I G K VVAD + +E R LAW+AGE+ L F G Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416 Query: 407 DLYVTTYARSFNVAPA---QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+Y T + F + P + KD R IGK EL LGY GG AF + A GL+L A Sbjct: 417 DIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMA 476 Query: 464 HLVKTNSAPEEWEDAENFCRWMQ------------ENHPEHAIEDLFIGTACERVKKAWR 511 + W W + ++ I D + C+ +K+ WR Sbjct: 477 KTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGEKDDRPSYILDKKVWRTCDAIKRMWR 536 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM--------KKDKNNLILMLP 563 + H W ++ A I N R V K L + LP Sbjct: 537 ESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLP 596 Query: 564 SGRSLVYR------------------DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 SGR + Y +V N TRQ +YTY GKL EN QA+ Sbjct: 597 SGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQAL 656 Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 RD+LA ++N GY IVL VHDEI+CETPD E+N + L LM P WA+G PL A Sbjct: 657 CRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVA 716 Query: 666 EGYESKRYRK 675 EG E KRY K Sbjct: 717 EGAEMKRYAK 726 >gi|90019722|ref|YP_525549.1| DNA polymerase I [Saccharophagus degradans 2-40] gi|89949322|gb|ABD79337.1| DNA polymerase I [Saccharophagus degradans 2-40] Length = 926 Score = 448 bits (1153), Expect = e-123, Method: Composition-based stats. Identities = 106/705 (15%), Positives = 207/705 (29%), Gaps = 169/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S Y E V+ +F HD + Sbjct: 351 AFDTETTSLN---------YME-AKVVGVSFAVAPGEAAYVPFGHDYLGAPEQLSEEQVL 400 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111 LK LE+ +V V N ++ +VL + + T++ + + + Sbjct: 401 GKLKPLLEDENVKKVGQNLKYDASVLANH-GIALQGIA-FDTMLESYVVNSTANRHDMDT 458 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + A G I+ E + ++ Y D +T + Sbjct: 459 LALAH--------LGHTNISF----EEIAGKGAKQLTFNQIQLDQAAPYAAEDADITLRL 506 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E L + + G +D + + + + ++ + Sbjct: 507 HQALWPQVEAVEGIKSLFENVELPLVPVLSKVERTGALIDATILGQQSAELAADLERIQR 566 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 E L + ++L LF + G+ + T+ +T + VL P + Sbjct: 567 EAWELAG-EEFNLASPKQLGVILFEKLGIPVIKKTKTGAPSTAEEVLQELALDYPLPALL 625 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + + TGR S QN+P + + Sbjct: 626 LEQR-GLAKLKSTYTDKLPTMINPHTGRVHTSYNQAV-TATGRLSSTDPNLQNIPIKTEA 683 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 VR IA EG ++V AD + IE R++A ++G+ Sbjct: 684 GRR-------------------------VRKAFIAPEGYRIVAADYSQIELRIMAHLSGD 718 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AF G D++ T A F + VT +QR K + Sbjct: 719 EGLTNAFNQGLDVHSATAAEVFGTSVESVTPEQRRSAKAINF--------------GLIY 764 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + +R + ++ Sbjct: 765 GMS------------------------------AFGLARQLHIGRNDAQRYIDTYFDRYP 794 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V+ ++ ++ + + GR L ++ Sbjct: 795 GVARYMEDIRVFAKE--------------------------HGYVETLMGRRLYLPEINA 828 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629 + R +Q + DI+ + M++ K +++ VH Sbjct: 829 SNGMRRQA---AERTAINAP------MQGSAADIIKKAMIDVDKWLSTLKVDAKMIMQVH 879 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + + L +M++ +PL E + Sbjct: 880 DELVLEVAEDQIEPVTATLCDIMSAALK--LDVPLLVEAGVGMNW 922 >gi|332160957|ref|YP_004297534.1| putative DNA polymerase from bacteriophage origin [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665187|gb|ADZ41831.1| Putative DNA polymerase from bacteriophage origin [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 669 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 245/673 (36%), Positives = 358/673 (53%), Gaps = 37/673 (5%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH- 91 + +D PV WD MP+ LK L++ + I A NS+F+RT+++ I Sbjct: 3 ITYALNDDPVSEWDITSGAKMPEDLKAYLQDPSIEIYAQNSHFDRTMMRHDMPSVIAGGI 62 Query: 92 -RWICTLVLARSNGLPSALKAVGEALKL--SSQKMEEGKELIARFCKGETHECLYDR-NK 147 RW T+V A ++GLP L + E L + K +EGK LI FCK R Sbjct: 63 ERWRDTMVKALAHGLPGGLGVLCEILGITQDKAKDKEGKALIQLFCKPRAKNSTIHRATS 122 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAH 205 H E W+ F +Y D+ R I K+L + + +EL W+ DQ INDRG +D LA Sbjct: 123 KTHPEEWKRFLKYAGNDIEAMRAIDKKLPVWNYQGKELALWHFDQLINDRGVQMDTVLAE 182 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265 V E+ L + ++LT V ++ + L + G+ L D+ ++T +R ++ Sbjct: 183 AAVTAVVDEQKLLAKRTQNLTDNEVQAATQRDALLRHIVESFGVDLPDMQKSTLERRIAD 242 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 +L ++ R++AS ++ K TL++ ++ DGRLRGTLQF GASRTGRW+G +F Sbjct: 243 -PELPSVLRELLAIRLQASTTSTSKYKTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQ 301 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 PQNLPRP E +D I L + +++IS +R C++A +GKKLVV+DL+ Sbjct: 302 PQNLPRPVLDQETIDTGIEALKAGCADLLFDNVMELISSALRGCIVAPKGKKLVVSDLSN 361 Query: 384 IEARVLAWMAGEQWKLKAFETG----------------EDLYVTTYARSFNVAPAQVTKD 427 IE RVLAW+AGE+WKL+AF DLY YAR+FN++P VTK Sbjct: 362 IEGRVLAWLAGEEWKLEAFRDYDTIIGYDEGGEALREGPDLYKLAYARAFNISPDDVTKL 421 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 QR IGKVMEL LG+ GG AF A GL+L+ A+ N +A+++ + + Sbjct: 422 QRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPNVPTSIQREAQSWYQASVK 481 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + + AC+ +K+ WR H W+E+ + I N K ++ + Sbjct: 482 QKRTFGLSEQVFI-ACDSLKRMWRNAHPETVSFWSEIENTVRRAIINPKQTFVCRKLKI- 539 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTRQLTREYTYGGKLTENIV 602 ++D + L + LPSGRS+ Y + G+ SY+ NT +R+ R TYGGKL EN Sbjct: 540 ----RRDGSWLRIQLPSGRSVCYPGIRIEGDKISYMGVNTYSRKWQRLKTYGGKLAENAT 595 Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLP 662 QA +RD++A M GY+I LTVHDE++ E PDTD F + L L+ +NP WA LP Sbjct: 596 QAAARDVMANNMPLIEARGYEITLTVHDEVLTEAPDTDAFTSDKLSELLATNPEWALDLP 655 Query: 663 LKAEGYESKRYRK 675 L A G+E+ YRK Sbjct: 656 LSAGGFEAYHYRK 668 >gi|255994008|ref|ZP_05427143.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC 49989] gi|255993676|gb|EEU03765.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC 49989] Length = 666 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 223/705 (31%), Positives = 311/705 (44%), Gaps = 76/705 (10%) Query: 3 TLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56 L+ID ET S +D+ G+ KYAE D V+L A+ DD VEL D + Q Sbjct: 5 KLYIDIETFSSVDIRTAGLYKYAESGDFEVLLLAYAIDDGDVELIDLTDGGEITQQKLVG 64 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 ++ LE+ + AHN++FE LK ++ I RW CT+V G P++L+ +GEAL Sbjct: 65 VRRLLESQNYIKCAHNAHFEMECLKRALHIIIRPSRWECTMVKGMYRGYPASLEKMGEAL 124 Query: 117 KLSSQ--KMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170 + K+ GK LI F CK RN P H E W LF EYCK DV V RE Sbjct: 125 DMPEDKAKLRTGKALINYFCKPCKPTKTNGGRTRNLPKHASEKWELFREYCKRDVEVARE 184 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 I K L + W D +N RG VD AL I ++ ++ +T V Sbjct: 185 IDKMLPDVPQGVHTEWMRDYLVNWRGIAVDEALVEAAIAIDGEVKSAHLDTIKRITG--V 242 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + R ++ WL + L + + +L LT A V +++ K Sbjct: 243 DNPRSRAQVLDWLNDTLDEEITSLNAASVKALLE--SDLTDDARAVLTAWQGLGKTSTKK 300 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LP 347 TL A D R+RG LQF GASRTGRW+G + P NLPR + + Sbjct: 301 YETLRAAAQKDNRVRGLLQFYGASRTGRWAGRLVQPHNLPRGDVYNLNQAGELVKAGHKK 360 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +S +R+C + EG K V+ D + IEARVLAW+AGE W L+ F+ Sbjct: 361 DIELLHGSVPNTLSGLIRTCFVPREGCKFVICDYSAIEARVLAWLAGEHWVLEEFKGDGK 420 Query: 408 LYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 +Y T AR +N+ + + K R GK+ LALGYQG A ++M ++ Sbjct: 421 IYEATAARMYNIDKSTIIKGHSNYAYRQKGKIATLALGYQGAVGALRQMGAS-------- 472 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 ED F + +AWR + ++ELW Sbjct: 473 --------------------------------EDEFTDDELRGLVRAWRVANPCIAELWR 500 Query: 523 ELHQAFEQTIEN--GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNR 577 + T+ + + NL + LPSGR L Y + Sbjct: 501 YTEMMAKSTVSDEFYSGTNPMIPISFKSTLNAVNGINLAIGLPSGRELYYHNPVIVDGAI 560 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDE 631 Y + T T+E TYGGKL ENIVQA++RD+LA+ + TK IVL VHDE Sbjct: 561 YYTDYTHAGKTKEQTYGGKLVENIVQAIARDVLADAINRITKTLVVGGINAHIVLHVHDE 620 Query: 632 IVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYRK 675 +V E L + ++ PSWA+GLPLK E + S Y+K Sbjct: 621 VVVEAEAGCAEKVQELLEGVFSTPPSWAEGLPLKGESFISDYYKK 665 >gi|296277208|ref|ZP_06859715.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus MR1] Length = 631 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 214/684 (31%), Positives = 309/684 (45%), Gaps = 83/684 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L SQK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ E W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+E + + +WR + + Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRS 578 W +A T+++ K R K L++ LPSGR+L Y + S Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKALVGENS 548 Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + + R+ ++ TYGGKL ENIVQA +RD+LA + G+ IV VHD Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSN 654 E++ E P + +M Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKP 631 >gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684] gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684] Length = 891 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 106/705 (15%), Positives = 202/705 (28%), Gaps = 166/705 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPV 52 + +D ET S L V+ F F + H Sbjct: 317 VISVDTETTSLNPLL----------AEVVGFCFAVEPGHGWYVPVGHCGGGAEEQLPRDE 366 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSAL 109 + ++ LE+ + V N ++ VL+ + + T++ + L Sbjct: 367 VVAQVQPLLEDATLAKVGQNLKYDALVLRRA-GIALR-GVVADTMLQSYLLYPAARSHGL 424 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 A+ G ++I+ + A + Y D +T Sbjct: 425 DALAA--------DHLGYKMISY----SEVAGTGKKQIGFDEVALDVATRYAAEDADITL 472 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++++R + E L + + G VD L+ +L+Q Sbjct: 473 QLYQRFDAELDGTLRELFETVEMPLLQVLIDMEWWGVRVDRERLDALSAGFSTSIKQLEQ 532 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277 ++ L + ++L LF + L T+ +T VL + + Sbjct: 533 QIYELAG-EEFNINSPKQLGVILFEKLDLPHGKKTKTGWSTAVDVLKNLADKHDVVALIL 591 Query: 278 NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L ++ D GR+ + + TGR S QN+P S Sbjct: 592 QYR-SLAKLKGTYTDALPLLIHPDSGRIHTSFNQAV-TATGRLSSSDPNLQNIPIRSEEG 649 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R + G+ L+ AD + IE RV+A MA E Sbjct: 650 RA-------------------------IREAFVPDAGQVLLAADYSQIELRVMAHMADEP 684 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++F GED++ T + F+V P V + R K + G Sbjct: 685 ILQESFRQGEDIHQRTASEIFSVFPDMVDSEMRRRAKTIN--------------FGVLYG 730 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + A + ++ + +++ Sbjct: 731 MG------------------------------AFSLAKDLGISNKEAKQYIDHYFERYPA 760 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E + Q + +L + GR D+ + Sbjct: 761 VLEFIEQQKQFGRE--------------------------HLYVETLLGRRCAVSDINSK 794 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 R VQ + DI+ M+ + +VL VHD Sbjct: 795 N---GQVRSYAERNA------VNYPVQGSAADIIKVAMVRIHQRLQDLQLKTRMVLQVHD 845 Query: 631 EIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+V + P + + +++ M +PL+ +R Sbjct: 846 ELVFDVPKDEVDDVVALVVQEMEQAVE--LRVPLEVSLGRGANWR 888 >gi|146280510|ref|YP_001170663.1| DNA polymerase I [Pseudomonas stutzeri A1501] gi|145568715|gb|ABP77821.1| DNA polymerase I [Pseudomonas stutzeri A1501] Length = 931 Score = 443 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 195/701 (27%), Gaps = 160/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S A+ ++ +F + H + Sbjct: 355 AFDTETTSLD----------AQRAELVGVSFAVEPGQAAYVPLRHSYMGVPQQLELDAVL 404 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ T + + ++ VL + +++ T++ + Sbjct: 405 SALKPLLEDPAKTKICQHGKYDMNVLM-HYGIEMRGMA-FDTMLESYVLD--------AT 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + + K L + E + + A G Y D VT + + Sbjct: 455 ATRHDMDSLAL-KYLGRGTIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQT 513 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L + E L + I G VD L + + + +L++E Sbjct: 514 LLGKLEQTPSLLKVLTEIEMPLVPVLARIERNGALVDAQLLGQQSVELGDKLVQLEREAF 573 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L L+ + G + T +T + VL+ + +V Sbjct: 574 DIAG-EEFNLGSPKQLCAILYDKLGCPVISKTAGGQPSTAESVLAELAEQDYPLPKVIMQ 632 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 S+ + L + +N T + TGR S QN+P + Sbjct: 633 HRSLSKLKGTYTDKLPQQINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRR- 691 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A+ G KL+ AD + IE R++A +A + L Sbjct: 692 ------------------------IRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGLL 727 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF+ D++ T A F V QV+ DQR K + G++ Sbjct: 728 HAFQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFG--------------LIYGMSA 773 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + ++ V Sbjct: 774 FGLAKQID------------------------------VGRKEAQEYIDRYFARYPGVLA 803 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + GR L ++ + Sbjct: 804 YMERTRTQAAE--------------------------QGYVETLFGRRLYLPEINSKNGA 837 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633 + + R +Q + DI+ M+ ++L VHDE+V Sbjct: 838 MR---KGAERTAINAP------MQGTAADIIKRAMIAVDGWLQDSGLDARVILQVHDELV 888 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + + LM+ +PL E + Sbjct: 889 LEVREDLVEQVREAICPLMSGAAQ--LDVPLLVEAGVGNNW 927 >gi|114322007|ref|YP_743690.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1] gi|114228401|gb|ABI58200.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1] Length = 912 Score = 443 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 107/703 (15%), Positives = 201/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + D ++ A H+ + Sbjct: 336 AFDLETSSLNYM----------DAEIVGVALAVGAGEAAYVPLAHEGPDTPTQLDRDRVL 385 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113 LK LE+ D V N ++ +VL DI + T++ + ++ Sbjct: 386 AALKPLLEDPDRAKVGQNLKYDMSVLARY---DIHLEGVAYDTMLESYVLDSTAS----- 437 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + K L K E + P + A Y D +T + + Sbjct: 438 ---RHDMDSLAL-KYLGRATVKYEDVCGKGAKQIPFAQVAVETATRYAGEDADITLRLHQ 493 Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E L + + G VD AL + + L+Q Sbjct: 494 TLYPRLEAEGRLVQVFHAIEMPLLPVLSRMERHGVKVDRALLEQQSTELAEGMAALEQRA 553 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 G + ++++ LF GL +T + VL + ++ Sbjct: 554 HEEAEGP-FNLSSPKQIQEILFERMGLPVLQKTPKGAPSTAESVLEELAARGYELPRLIL 612 Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 ++ + L ++ GR+ + A+ TGR S QN+P + Sbjct: 613 AYRSLAKLKTTYTDKLPRLIHPKTGRVHTSYHQAVAA-TGRLSSSDPNLQNIPVRTAEGR 671 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R +A G KL+ AD + +E R++A ++G++ Sbjct: 672 R-------------------------IRKAFVAEPGCKLLAADYSQVELRIMAHLSGDEG 706 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF G D++ T A F +AP +V +QR K + G+ Sbjct: 707 LRQAFAEGADIHSATAAEVFGLAPERVGGEQRRAAKAINF--------------GLIYGM 752 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A + + + +++ V Sbjct: 753 S------------------------------AYGLARQLGIERGEAQAYVDRYFERYPGV 782 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 E + + + GR L ++ Sbjct: 783 KEYMDRTRAEARE--------------------------RGYVETLFGRRLYLPEINARN 816 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631 R +Q + D++ M+ + +V+ VHDE Sbjct: 817 ---RQRREYAERTAINAP------MQGTAADLIKRAMVAVDAWLTEAHSKARMVMQVHDE 867 Query: 632 IVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E P D + L M + A +PL+ + + + Sbjct: 868 LVLEVPAADVPAVAEGLRERMQAAGELA--VPLEVDVGVADDW 908 >gi|188532189|ref|YP_001905986.1| DNA polymerase I [Erwinia tasmaniensis Et1/99] gi|188027231|emb|CAO95070.1| DNA polymerase I [Erwinia tasmaniensis Et1/99] Length = 929 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 114/705 (16%), Positives = 212/705 (30%), Gaps = 168/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S L+ +I +F HD + Sbjct: 353 AFDLETDSLDTLS----------ANIIGLSFATAPGVAAYLPVAHDYLDAPAQLDRNDVL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LEN V N F+R VLK+ ++++ R T++ + + + Sbjct: 403 ARLKPLLENPQALKVGQNLKFDRGVLKSY-DIELQGIR-FDTMLESYALNSVIGRHDMDT 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L + E + ++ A G Y D VT ++ Sbjct: 461 LALR------------WLNHKTVTFEEIAGKGKKQLTFNQIALEQAGHYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P KEQ L + I G +D + T +Q + +L+Q Sbjct: 509 HLKMWPALEKEQGPKNVFEQLEMPLVPVMSRIERNGVLIDQGILATHSQELGSRLAELEQ 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+T LF + G+ T +T + VL+ P + Sbjct: 569 KAHELAG-EPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R S+ + L +N T + TGR S QN+P + Sbjct: 628 LEHR-GLSKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA G ++V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPPGYRIVAADYSQIELRIMAHLSQDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF + +D++ T A F V+ +V+ +QR K + L Y + Sbjct: 722 GLLSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGM-----SSFGLSRQ 776 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L ++ + +++ Sbjct: 777 L---------------------------------------NIGAGEAKKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + + + + GR L D+ + Sbjct: 798 VLQYMESTRELAAE--------------------------KGYVSTLDGRRLYLPDINAS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVH 629 + + R +Q + DI+ M+ +++ VH Sbjct: 832 NAIRR---KAAERAAINAP------MQGTAADIIKRAMIAVDGWLEQQTSPDVKMIMQVH 882 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E A + + LM + A +PL+ + + Sbjct: 883 DELVFEVRADAVEAASAQIRALMEGSM--ALDVPLRVDIGVGDNW 925 >gi|220921495|ref|YP_002496796.1| DNA polymerase I [Methylobacterium nodulans ORS 2060] gi|219946101|gb|ACL56493.1| DNA polymerase I [Methylobacterium nodulans ORS 2060] Length = 1024 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 110/715 (15%), Positives = 201/715 (28%), Gaps = 173/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L +D ET + A ++ + H Sbjct: 437 VLAVDTETNALD----------AHRADLVGVSLATAPGRAAYIPLSHRGSEDLFGEGLLP 486 Query: 51 -----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 + LK LE+ V V N ++ VL I + + T++++ Sbjct: 487 NQLPWEAVRARLKPLLEDPAVLKVGQNLKYDWLVLARH---GIEVRPYDDTMLISYVLDA 543 Query: 106 ---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 + + G + I R Y Sbjct: 544 GKGSHGMDELARRH--------LGHQPITF----ADVTGTGRTKVTFDRVPLDKATAYAA 591 Query: 163 GDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D VT +++ ++P + E+ L + + G VD + L+ Sbjct: 592 EDADVTLRLWRLMKPRLAAERRATVYETLERPLVPVLARMESCGIRVDRGMLSRLSGDFS 651 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268 +L+ E++ + S +++ LF + GL T + T +L Sbjct: 652 QSLARLEAEIQEMAG-ESFSVSSPKQIGDILFGKFGLPGAKKTPSGQWATPATLLEELAG 710 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + + S+ +TL E + + T L A+ TGR S QN Sbjct: 711 QGHALPKKILEWRQLSKLKSTYTDTLQEHADRETNRVHTSFALAATTTGRLSSSDPNLQN 770 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +P + +R +A EG KL+ AD + IE R+ Sbjct: 771 IPIRTEEGRR-------------------------IRQAFVADEGHKLISADYSQIELRL 805 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V Q+T D R K + Sbjct: 806 LAHIADIPQLREAFAAGIDIHAATASAMFGVPLDQMTPDLRRRAKTINF----------- 854 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 G++ A K Sbjct: 855 ---GIIYGIS------------------------------AFGLADRLGIPQGEAAAFIK 881 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + ++ + +++ + + G GR Sbjct: 882 QYFERFPGIRAYIDDIK---KTCRDKGYVTTL-----------------------FGRVC 915 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------ 622 Y + +N + R+ +Q + DI+ M+ A Sbjct: 916 HYPQIRSNNP---QERASVERQAINAP------IQGSAADIIRRAMVRMEGALAAAGLTT 966 Query: 623 DIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWA--KGLPLKAEGYESKRYR 674 ++L VHDE+V E PD + ++ +M P A +PL E + ++ Sbjct: 967 RMLLQVHDELVFEAPDDEVERALPIIARVMEEAPHPAVQLRVPLAVEAKAATNWQ 1021 >gi|306826828|ref|ZP_07460129.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782] gi|304430991|gb|EFM33999.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782] Length = 643 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 214/700 (30%), Positives = 311/700 (44%), Gaps = 83/700 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + +D ET S D+ K G+ KYA ED ++ ++ + V L D P+ LK Sbjct: 1 MR-IDLDLETYSSNDI-KNGVYKYADAEDFDILFMSYSINFGDVVLVDLT-KEEFPEFLK 57 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD------IPIHRWICTLVLARSNGLPSALKAV 112 + N D T A N+ FER L F W +V A+ GLP++L+ Sbjct: 58 NHILNADATFWAWNTVFERICLSMYFQKKGWSKGYFDPKNWKDIMVHAQELGLPASLERC 117 Query: 113 GEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVT 168 L L QK GK LI F CK RN P H E W +GEY DV Sbjct: 118 ASYLGLEEQKDTRGKALIRYFSIPCKPTKANGGRTRNLPEHDPEKWEEYGEYNVQDVVTQ 177 Query: 169 REIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 I ++LE P+ +E + + DQ INDRG +D L + DV+ L EL+++T Sbjct: 178 MAIAEKLESVPVHDREWDHYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKAIT 237 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + +L WL G LT+ V K + +V +++ + S Sbjct: 238 GLA--NPNSRAQLLPWLKEH-GYSANGLTK---ADVEQELKTAEGELKRVLELKLQTAMS 291 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH- 345 ++ K + AM SDGR+ G LQF GASRTGRW+G V QNL R + + Sbjct: 292 SLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDARGYVKK 351 Query: 346 --LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + + VR+ ++A +G V+D + IEARV+AW AGEQW+L F Sbjct: 352 RDIDAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFS 411 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 T +Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M Sbjct: 412 THGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG----------- 460 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 A+ + + WR+ + ++ + W + Sbjct: 461 -----------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKD 491 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNN 576 + +A + I++ I K R + K L + LPSGR+L Y D G+ Sbjct: 492 VQRAAIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDK 545 Query: 577 RSYLNTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 Y + T + TYGGKL ENIVQA +RDILAE ++ AG+ +V VHDE + E Sbjct: 546 IIYEGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGHGVVFHVHDEAIIE 605 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + LM P WA+GLPL +EGY +K Y K Sbjct: 606 ---GSGLTIEEVNDLMAQAPDWAEGLPLNSEGYVTKYYMK 642 >gi|152985854|ref|YP_001351604.1| DNA polymerase I [Pseudomonas aeruginosa PA7] gi|150961012|gb|ABR83037.1| DNA polymerase I [Pseudomonas aeruginosa PA7] Length = 917 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 108/706 (15%), Positives = 197/706 (27%), Gaps = 166/706 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53 + D ET S A+ V+ +F + H + Sbjct: 338 IAFDTETTS----------IDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPDQLERDAV 387 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110 + LK LE+ V ++ ++ VL T++ + + Sbjct: 388 LRALKPLLEDPQKLKVGQHAKYDINVLANASTPIAMQGVAYDTMLESYVLDSTATRHDMD 447 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 ++ G I E + + A G Y D VT Sbjct: 448 SLALKY--------LGHSTIRF----EDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLR 495 Query: 171 IFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L E L + I G VD L ++ + + L+ Sbjct: 496 LHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALE 555 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQ 275 ++ L + ++L L+ + GL + T +T + VL+ + + + Sbjct: 556 RQAYDLAGQ-EFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDFELPK 614 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 V S+ + L E +N GR+ + A+ TGR S QN+P + Sbjct: 615 VIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAA-TGRLSSSDPNLQNIPIRTA 673 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA +G KL+ AD + IE R++A +A Sbjct: 674 EGRR-------------------------IRQAFIAPQGYKLLAADYSQIELRIMAHLAK 708 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF D++ T A F V V+ DQR K + Sbjct: 709 DEGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF--------------GLI 754 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ A + + + ++ Sbjct: 755 YGMSAFGLAKQI------------------------------GVERKEAQAYIDRYFARY 784 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + + GR L ++ Sbjct: 785 PGVLAYMERTRAQAAE--------------------------QGFVETLFGRRLYLPEIH 818 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628 + + + R +Q + DI+ M+ ++L V Sbjct: 819 SKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLRESGLDARVILQV 869 Query: 629 HDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E + + LM+ S +PL E + Sbjct: 870 HDELVLEVREDLVEQVREGIRPLMSGAAS--LDVPLVVEAGIGSNW 913 >gi|296392358|ref|ZP_06881833.1| DNA polymerase I [Pseudomonas aeruginosa PAb1] Length = 913 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 199/707 (28%), Gaps = 168/707 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53 + D ET S A+ V+ +F + H + Sbjct: 334 IAFDTETTS----------IDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLP---SAL 109 + LK LE+ V ++ ++ VL + + + T++ + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 ++ G I E + + A G Y D VT Sbjct: 443 DSLALKY--------LGHSTIRF----EDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTL 490 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + + L E L + I G VD L ++ + + L Sbjct: 491 RLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVAL 550 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAI 274 +++ L + ++L L+ + GL + T +T + VL+ + + Sbjct: 551 ERQAYDLAGQ-EFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDFELP 609 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 +V S+ + L E +N GR+ + A+ TGR S QN+P + Sbjct: 610 KVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAA-TGRLSSSDPNLQNIPIRT 668 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A +G KL+ AD + IE R++A +A Sbjct: 669 AEGRR-------------------------IRQAFVAPQGYKLLAADYSQIELRIMAHLA 703 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + L AF D++ T A F V V+ DQR K + Sbjct: 704 KDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF--------------GL 749 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ A + + + + Sbjct: 750 IYGMSAFGLAKQI------------------------------GVERKEAQAYIDRYFAR 779 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + + GR L ++ Sbjct: 780 YPGVLAYMERTRAQAAE--------------------------QGFVETLFGRRLYLPEI 813 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627 + + + R +Q + DI+ M+ ++L Sbjct: 814 HSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLLESGLDARVILQ 864 Query: 628 VHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E + + LM+ + +PL E + Sbjct: 865 VHDELVLEVREDLVEQVREGIRPLMSGAAT--LDVPLVVEAGVGSNW 909 >gi|116053643|ref|YP_793970.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14] gi|115588864|gb|ABJ14879.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14] Length = 913 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 199/707 (28%), Gaps = 168/707 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53 + D ET S A+ V+ +F + H + Sbjct: 334 IAFDTETTS----------IDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLP---SAL 109 + LK LE+ V ++ ++ VL + + + T++ + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 ++ G I E + + A G Y D VT Sbjct: 443 DSLALKY--------LGHSTIRF----EDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTL 490 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + + L E L + I G VD L ++ + + L Sbjct: 491 RLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVAL 550 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAI 274 +++ L + ++L L+ + GL + T +T + VL+ + + Sbjct: 551 ERQAYDLAGQ-EFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDFELP 609 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 +V S+ + L E +N GR+ + A+ TGR S QN+P + Sbjct: 610 KVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAA-TGRLSSSDPNLQNIPIRT 668 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A +G KL+ AD + IE R++A +A Sbjct: 669 AEGRR-------------------------IRQAFVAPQGYKLLAADYSQIELRIMAHLA 703 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + L AF D++ T A F V V+ DQR K + Sbjct: 704 KDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF--------------GL 749 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ A + + + + Sbjct: 750 IYGMSAFGLAKQI------------------------------GVERKEAQAYIDRYFAR 779 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + + GR L ++ Sbjct: 780 YPGVLAYMERTRAQAAE--------------------------QGFVETLFGRRLYLPEI 813 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627 + + + R +Q + DI+ M+ ++L Sbjct: 814 HSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLQESGLDARVILQ 864 Query: 628 VHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E + + LM+ + +PL E + Sbjct: 865 VHDELVLEVREDLVEQVREGIRPLMSGAAT--LDVPLVVEAGVGSNW 909 >gi|319943201|ref|ZP_08017484.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599] gi|319743743|gb|EFV96147.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599] Length = 977 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 103/706 (14%), Positives = 192/706 (27%), Gaps = 166/706 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 + ID ET S ++ + H+ Sbjct: 400 DRVAIDTETTSKDP----------HAARLVGISLAVTPWQGCYIPVGHNYAGVPEQLPLD 449 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + VLK LE+ V N ++ VL + + T++ + + Sbjct: 450 EVLAVLKPWLESDAQQKVGQNIKYDMHVLANH-GITLR-GVVDDTMLESYVLEAHRTHGM 507 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 A+ L E + + A + Y D VT Sbjct: 508 DALAGRH------------LNRTTITYEEVAGKGAKAIGFDQVALDVATPYAAEDADVTL 555 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L P E + + G +D +Q + + +L Sbjct: 556 QLHRTLWPAIEASERLRHIYRNIEMPTLQVLYDMERHGVLLDRDRLRAQSQQLAEQLQEL 615 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274 +++ L + ++L LF GL + T +T + VL P Sbjct: 616 ERQAHELAGQP-FNLGSTKQLGEILFERLGLPVVKKTPAGKPSTDESVLEKLALDYPLPK 674 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + ++ + L E ++ T + TGR + QN+P + Sbjct: 675 VLLQ-WRGLAKLKSTYTDKLPEMVDPKTGRVHTTYSQAVAITGRLASSDPNLQNIPVRTP 733 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA G +++ AD + IE R++A ++ Sbjct: 734 EGRR-------------------------IREAFIAPPGHQMMSADYSQIELRIMAHISQ 768 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + LKAF GED++ T + F V A+V +QR Sbjct: 769 DAGLLKAFADGEDVHRATASEVFGVPIAEVNSEQRRYA--------------KVINFGLI 814 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ A A + + ++ Sbjct: 815 YGMS------------------------------AFGLAANLGIERGAAQAYIDRYFARY 844 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V+ + + GR L ++G Sbjct: 845 PGVAAYMERTRAQARE--------------------------QGYVETVFGRRLWLPEIG 878 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628 ++ R +Q + D++ M++ G +V+ V Sbjct: 879 SSNMGRRQM---AERAAINAP------MQGTAADLIKLAMIDVHAWLRRENLGARLVMQV 929 Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E PD + L M +PL AE + + Sbjct: 930 HDELVLEVPDAEVERLKTDLPARMAGVAQ--LSVPLLAEVGVGENW 973 >gi|268592231|ref|ZP_06126452.1| DNA polymerase I [Providencia rettgeri DSM 1131] gi|291312280|gb|EFE52733.1| DNA polymerase I [Providencia rettgeri DSM 1131] Length = 930 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 105/701 (14%), Positives = 216/701 (30%), Gaps = 159/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD + Sbjct: 353 AFDTETDSLD----------TQEARLVGMSFAIEPGHAAYLPLGHDYLDAPVQLPLEEVL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 +++K LE+ ++ + N ++ VL+ ++++ + T++ + + + Sbjct: 403 ELMKPILESENILKIGQNLKYDAEVLENY-DIELKGIGY-DTMLESYVLNSVAGMG---- 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + + L + E + ++ A Y D VT + + Sbjct: 457 --RHDMDSLADRH-LNHKTVSFEEIAGKGKKQLTFNQIALEEAANYAAEDADVTLLLHQA 513 Query: 175 LEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + + +G +D + ++++ +L++E Sbjct: 514 LYPQLEAEPKLNHIFQNIEMPLVPVLVRMERKGVLIDANVLAAQSKVITARLAELEKEAF 573 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L + ++L+T LF + L + T + T + VL + + Sbjct: 574 ELAG-EEFNLASPKQLQTILFEKLQLPVIKKTPSGAASTNEEVLEELALNHALPKLLLEH 632 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N + T + TGR S QN+P + Sbjct: 633 R-SLAKLKSTYTDKLPLMINPRTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRTEEGRR- 690 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA EG K++ AD + IE R++A ++ ++ L Sbjct: 691 ------------------------IRQAFIAREGYKVMAADYSQIELRIMAHLSQDKGLL 726 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F V QVT DQR K + G++ Sbjct: 727 TAFAEGKDIHKATAAEVFGVPLEQVTSDQRRSAKAINF--------------GLIYGMS- 771 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + +R + +++ V Sbjct: 772 -----------------------------AFGLARQLGIPRGEAQRYMDLYFERYPGVLR 802 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + GR L D+ ++ Sbjct: 803 YMENTRLQA--------------------------SEQGYVETLEGRRLYLADIKSSNGM 836 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 + RE +Q + DI+ + M+ K D+++ VHDE+V Sbjct: 837 RR---KAAEREAINAP------MQGTAADIIKKAMIAVDNWLQTEKPHADMLMQVHDELV 887 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E +++ + + LM + +PLK + + Sbjct: 888 FEVKESELERVQAQVQSLMEQSMK--LDVPLKVDVGIGDNW 926 >gi|327478747|gb|AEA82057.1| DNA polymerase I [Pseudomonas stutzeri DSM 4166] Length = 914 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 195/701 (27%), Gaps = 160/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S A+ ++ +F + H + Sbjct: 338 AFDTETTSLD----------AQRAELVGVSFAVEPGQAAYVPLRHSYMGVPQQLELDAVL 387 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ T + + ++ VL + +++ T++ + Sbjct: 388 GALKPLLEDPAKTKICQHGKYDMNVLM-HYGIEMRGMA-FDTMLESYVLD--------AT 437 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + + K L + E + + A G Y D VT + + Sbjct: 438 ATRHDMDSLAL-KYLGRGTIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQT 496 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L + E L + I G VD L + + + +L++E Sbjct: 497 LLGKLEQTPSLLKVLTEIEMPLVPVLARIERNGALVDAQLLGQQSVELGDKLVQLEREAF 556 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L L+ + G + T +T + VL+ + +V Sbjct: 557 DIAG-EEFNLGSPKQLCAILYDKLGCPVISKTAGGQPSTAESVLAELAEQDYPLPKVIMQ 615 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 S+ + L + +N T + TGR S QN+P + Sbjct: 616 HRSLSKLKGTYTDKLPQQINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRR- 674 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A+ G KL+ AD + IE R++A +A + L Sbjct: 675 ------------------------IRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGLL 710 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF+ D++ T A F V QV+ DQR K + G++ Sbjct: 711 HAFQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFG--------------LIYGMSA 756 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + ++ V Sbjct: 757 FGLAKQID------------------------------VGRKEAQEYIDRYFARYPGVLA 786 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + GR L ++ + Sbjct: 787 YMERTRTQAAE--------------------------QGYVETLFGRRLYLPEINSKNGA 820 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633 + + R +Q + DI+ M+ ++L VHDE+V Sbjct: 821 MR---KGAERTAINAP------MQGTAADIIKRAMIAVDGWLQDSGLDARVILQVHDELV 871 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + + LM+ +PL E + Sbjct: 872 LEVREDLVEQVREAICPLMSGAAQ--LDVPLLVEAGVGNSW 910 >gi|15600686|ref|NP_254180.1| DNA polymerase I [Pseudomonas aeruginosa PAO1] gi|81539387|sp|Q9HT80|DPO1_PSEAE RecName: Full=DNA polymerase I; Short=POL I gi|9951828|gb|AAG08878.1|AE004962_2 DNA polymerase I [Pseudomonas aeruginosa PAO1] Length = 913 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 199/707 (28%), Gaps = 168/707 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53 + D ET S A+ V+ +F + H + Sbjct: 334 IAFDTETTS----------IDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLP---SAL 109 + LK LE+ V ++ ++ VL + + + T++ + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 ++ G I E + + A G Y D VT Sbjct: 443 DSLALKY--------LGHSTIRF----EDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTL 490 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + + L E L + I G VD L ++ + + L Sbjct: 491 RLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVAL 550 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAI 274 +++ L + ++L L+ + GL + T +T + VL+ + + Sbjct: 551 ERQAYDLAGQ-EFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDFELP 609 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 +V S+ + L E +N GR+ + A+ TGR S QN+P + Sbjct: 610 KVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAA-TGRLSSSDPNLQNIPIRT 668 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A +G KL+ AD + IE R++A +A Sbjct: 669 AEGRR-------------------------IRQAFVAPQGYKLLAADYSQIELRIMAHLA 703 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + L AF D++ T A F V V+ DQR K + Sbjct: 704 KDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF--------------GL 749 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ A + + + + Sbjct: 750 IYGMSAFGLAKQI------------------------------GVERKEAQAYIDRYFAR 779 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + + GR L ++ Sbjct: 780 YPGVLAYMERTRAQAAE--------------------------QGFVETLFGRRLYLPEI 813 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627 + + + R +Q + DI+ M+ ++L Sbjct: 814 HSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLQESGLDARVILQ 864 Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E + + LM+ + +PL E + Sbjct: 865 VHDELVLEVREDLVEQVCEGIRPLMSGAAT--LDVPLVVEAGVGSNW 909 >gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301] gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301] Length = 985 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 104/714 (14%), Positives = 205/714 (28%), Gaps = 174/714 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 L D ET S + ++ F+ H Sbjct: 398 LAFDTETTSVDPM----------QAELVGFSLALAPGRAAYIPLQHKSGAGDLLGGGTVE 447 Query: 51 -----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 LK LE+ V +A N ++ +++ I + T++++ Sbjct: 448 GQIPLGEALAALKTVLEDASVLKIAQNMKYDWLIMRRY---GINTVSFDDTMLISYVLDA 504 Query: 106 ---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 + + E G IA + + Y Sbjct: 505 GTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSSVTFDMVDIDRATAYAA 552 Query: 163 GDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 553 EDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLA 612 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKK 268 + E+ L + ++L LF + GL T+ +T +VL Sbjct: 613 QAAAAYEDEIYELAG-ERFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAA 671 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + + + ++ + L +N R T + ++ TGR S QN Sbjct: 672 EGHPLPRKIVDWRQLTKLKSTYTDALPGFINPATRRVHTCYAMASTSTGRLSSSDPNLQN 731 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +P + + +R+ IA G KL+ AD + IE RV Sbjct: 732 IPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELRV 766 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + Sbjct: 767 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF----------- 815 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 G++ A+ + + + Sbjct: 816 ---GIIYGISAFGLANQLSI------------------------------PREEAGQYIR 842 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + ++ + + + + + GR Sbjct: 843 TYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRRA 876 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGY 622 Y D+ + R +Q + DI+ M+ K Sbjct: 877 HYPDIRASNP---QIRAFNERAAINAP------IQGSAADIIRRAMIRMEDALAKEKLAA 927 Query: 623 DIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + S++ H+M + P+ + +PL + + + Sbjct: 928 RMLLQVHDELIFEVPENEVEKTVSVVRHVMENAAMPAVSLAVPLHVDARAAHNW 981 >gi|107104595|ref|ZP_01368513.1| hypothetical protein PaerPA_01005674 [Pseudomonas aeruginosa PACS2] Length = 913 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 199/707 (28%), Gaps = 168/707 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53 + D ET S A+ V+ +F + H + Sbjct: 334 IAFDTETTS----------IDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLP---SAL 109 + LK LE+ V ++ ++ VL + + + T++ + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 ++ G I E + + A G Y D VT Sbjct: 443 DSLALKY--------LGHSTIRF----EDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTL 490 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + + L E L + I G VD L ++ + + L Sbjct: 491 RLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVAL 550 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAI 274 +++ L + ++L L+ + GL + T +T + VL+ + + Sbjct: 551 ERQAYDLAGQ-EFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDFELP 609 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 +V S+ + L E +N GR+ + A+ TGR S QN+P + Sbjct: 610 KVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAA-TGRLSSSDPNLQNIPIRT 668 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A +G KL+ AD + IE R++A +A Sbjct: 669 AEGRR-------------------------IRQAFVAPQGYKLLAADYSQIELRIMAHLA 703 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + L AF D++ T A F V V+ DQR K + Sbjct: 704 KDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF--------------GL 749 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ A + + + + Sbjct: 750 IYGMSAFGLAKQI------------------------------GVERKEAQAYIDRYFAR 779 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + + GR L ++ Sbjct: 780 YPGVLAYMERTRAQAAE--------------------------QGFVETLFGRRLYLPEI 813 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627 + + + R +Q + DI+ M+ ++L Sbjct: 814 HSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLQESGLDARVILQ 864 Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E + + LM+ + +PL E + Sbjct: 865 VHDELVLEVREELVEQVCEGIRPLMSGAAT--LDVPLVVEAGVGSNW 909 >gi|218894596|ref|YP_002443466.1| DNA polymerase I [Pseudomonas aeruginosa LESB58] gi|218774825|emb|CAW30643.1| DNA polymerase I [Pseudomonas aeruginosa LESB58] Length = 913 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 107/707 (15%), Positives = 200/707 (28%), Gaps = 168/707 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53 + D ET S A+ V+ +F + H + Sbjct: 334 IAFDTETTS----------IDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLP---SAL 109 + LK LE+ V ++ ++ VL + + + T++ + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 ++ G I E + + A G Y D VT Sbjct: 443 DSLALKY--------LGHSTIRF----EDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTL 490 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + + L E L + I G VD L ++ + + L Sbjct: 491 RLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVAL 550 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAI 274 +++ L + ++L L+ + GL + T +T + VL+ + + Sbjct: 551 ERQAYDLAGQ-EFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDFELP 609 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 +V S+ + L E +N GR+ + A+ TGR S QN+P + Sbjct: 610 KVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAA-TGRLSSSDPNLQNIPIRT 668 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A +G KL+ AD + IE R++A +A Sbjct: 669 AEGRR-------------------------IRQAFVAPQGYKLLAADYSQIELRIMAHLA 703 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + L AF G D++ T A F V V+ DQR K + Sbjct: 704 KDDGLLDAFRHGLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF--------------GL 749 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ A + + + + Sbjct: 750 IYGMSAFGLAKQI------------------------------GVERKEAQAYIDRYFAR 779 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + + GR L ++ Sbjct: 780 YPGVLAYMERTRAQAAE--------------------------QGFVETLFGRRLYLPEI 813 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627 + + + R +Q + DI+ M+ ++L Sbjct: 814 HSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLQESGLDARVILQ 864 Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E + + LM+ + +PL E + Sbjct: 865 VHDELVLEVREELVEQVCEGIRPLMSGAAT--LDVPLVVEAGVGSNW 909 >gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320] gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320] Length = 932 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 108/702 (15%), Positives = 221/702 (31%), Gaps = 162/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ D +I +F + HD + Sbjct: 356 AFDTETDSLNNI----------DARLIGLSFAVEPGKAAYIPLRHDYLDAPEQLPVDEVL 405 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ + + N F+R +++ +++ + T++ + S+ Sbjct: 406 TALKPILEDKTILKIGQNLKFDRGIMEN-EGIELNGI-YFDTMLESYVLNSVSS------ 457 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + E K L + E ++ Y D +T + + Sbjct: 458 --RHDMDTLAE-KHLNHKTTTFEEIAGKGKGQLTFNQIEVEQATLYAAEDADITLLLHQA 514 Query: 175 LEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + + +G +D + +Q + ++++E Sbjct: 515 LYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLAEIEKETF 574 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 +L + ++L+ LF + L + T +T + VL + + + Sbjct: 575 ALAGQ-EFNLSSPKQLQEILFEKLNLPIIKKTPKGAPSTNEEVLEALAHSHELPRLILEH 633 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +NS + T + TGR S QN+P + Sbjct: 634 R-GLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRR- 691 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA +G K+V AD + IE R++A ++ ++ L Sbjct: 692 ------------------------IRQAFIARDGFKIVAADYSQIELRIMAHLSQDKGLL 727 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T + F + +VT +QR K + G++ Sbjct: 728 DAFAQGKDIHRATASEVFGIPLDEVTSEQRRSAKAINFG--------------LIYGMSA 773 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + +R + +++ V + Sbjct: 774 FGLSQQI------------------------------GVERKEAQRYMDLYFERYPGVLD 803 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + +Q + G GR L ++ + + Sbjct: 804 YM---ERTRKQASQQGYVETL-----------------------DGRRLYLPEINSKNAI 837 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEI 632 + RE +Q + DI+ + M+ +++ VHDE+ Sbjct: 838 RR---KASEREAINAP------MQGTAADIIKKAMIAVDNWICHECPDDVHMIMQVHDEL 888 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E ++ A +M++ LM S+ A +PLK E + Sbjct: 889 VFEVRESYLEKANAMIHKLMESSMELA--IPLKVEVGVGNNW 928 >gi|254500698|ref|ZP_05112849.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11] gi|222436769|gb|EEE43448.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11] Length = 1001 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 107/716 (14%), Positives = 201/716 (28%), Gaps = 175/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + D ET S A ++ + H Sbjct: 412 YVAFDTETTSLD----------AMQAELVGISLSCKPGKACYIPLTHKDGEGDLLGGGGL 461 Query: 51 -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 + LK LE+ + +A N ++ V+ + + + T++L+ + Sbjct: 462 LPDQIPLDDALKALKPMLEDRGILKIAQNLKYDWLVMTRH---GVDVDPYDDTMLLSYTV 518 Query: 104 GLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + E G + I + + A Y Sbjct: 519 DAGKGGNGMDELSERW--------LGHKPIPF----KEVCGSGKSMITFDKVAIDKATAY 566 Query: 161 CKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQI 210 D VT ++ L+P + + + + + RG VD + L+ Sbjct: 567 AAEDADVTLRLWLTLKPRLASDHMATVYETLERPMVPVLARMEKRGISVDRQMLSRLSGD 626 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266 L+ E+ L + ++L LF + GL T+ +T +VL Sbjct: 627 FAQGAAALESEIYELAG-ETFNVGSPKQLGDILFGKMGLPGGKKTKTGAWSTSAQVLEDL 685 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + S+ + L +N + + T L A+ TGR S Sbjct: 686 AAEGHPLPSKIVEWRQLSKLKSTYTDALPGYINPETKRVHTSYSLAATTTGRLSSSEPNL 745 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P + + + +R IA +G+KL+ AD + IE Sbjct: 746 QNIPVRTEAGRK-------------------------IRQAFIAEKGQKLISADYSQIEL 780 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA MA KAFE G D++ T + F + R K + Sbjct: 781 RVLAHMADIPQLKKAFEDGLDIHAMTASEMFGTPIEGMDPMVRRQAKAINF--------- 831 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ A + Sbjct: 832 -----GIIYGIS------------------------------AFGLANQLGISRGEAGDY 856 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 K + Q+ + + + + + + GR Sbjct: 857 IKTYFQRFPGIKDYMEAVKKQVH--------------------------ADGYVTTIFGR 890 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KA 620 Y +V + R +Q + DIL M+ K Sbjct: 891 KAHYPEVNTKNPNMR---AFYERAAINAP------IQGSAADILRRAMVRMEDRLTASKL 941 Query: 621 GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ ++ +M + P+ +PL+ + + + Sbjct: 942 DAQMLLQVHDELIFEVPEDQVEATIPLIKDVMENACDPALKFSVPLQVDARAADNW 997 >gi|313111566|ref|ZP_07797365.1| DNA polymerase I [Pseudomonas aeruginosa 39016] gi|310883867|gb|EFQ42461.1| DNA polymerase I [Pseudomonas aeruginosa 39016] Length = 913 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 198/707 (28%), Gaps = 168/707 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53 + D ET S A+ V+ +F + H + Sbjct: 334 IAFDTETTS----------IDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLP---SAL 109 + LK LE+ V ++ ++ VL + + + T++ + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 ++ G I E + + A G Y D VT Sbjct: 443 DSLALKY--------LGHSTIRF----EDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTL 490 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + + L E L + I G VD L ++ + + L Sbjct: 491 RLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVAL 550 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAI 274 +++ L + ++L L+ + GL + T +T + VL+ + + Sbjct: 551 ERQAYDLAGQ-EFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDFELP 609 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 +V S+ + L E +N GR+ + A+ TGR S QN+P + Sbjct: 610 KVIMQYRSMSKLKSTYTDRLPEQINLRTGRIHTSYHQAVAA-TGRLSSSDPNLQNIPIRT 668 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A +G KL+ AD + IE R++A +A Sbjct: 669 AEGRR-------------------------IRQAFVAPQGYKLLAADYSQIELRIMAHLA 703 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + L AF D++ T A F V V DQR K + Sbjct: 704 KDDGLLDAFRHDLDVHRATAAEVFGVPLEDVNGDQRRSAKAINF--------------GL 749 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ A + + + + Sbjct: 750 IYGMSAFGLAKQI------------------------------GVERKEAQAYIDRYFAR 779 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + + GR L ++ Sbjct: 780 YPGVLAYMERTRAQAAE--------------------------QGFVETLFGRRLYLPEI 813 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627 + + + R +Q + DI+ M+ ++L Sbjct: 814 HSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLQESGLDARVILQ 864 Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E + + LM+ + +PL E + Sbjct: 865 VHDELVLEVREDLVEQVCEGIRPLMSGAAT--LDVPLVVEAGVGSNW 909 >gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2] gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2] Length = 978 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 204/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 390 VLAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 LK LE+ + +A N ++ V++ I + T++++ Sbjct: 440 ENQIPLDAALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 497 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella sp. BO1] gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella sp. BO1] Length = 978 Score = 439 bits (1128), Expect = e-120, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 204/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 390 VLAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 LK LE+ + +A N ++ V++ I + T++++ Sbjct: 440 ENQIPLDAALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 497 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 605 AQAAAAYEDEIYALAG-EKFTISSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|313200166|ref|YP_004038824.1| DNA polymerase i [Methylovorus sp. MP688] gi|312439482|gb|ADQ83588.1| DNA polymerase I [Methylovorus sp. MP688] Length = 918 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 118/705 (16%), Positives = 202/705 (28%), Gaps = 168/705 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMP---- 54 + D ET S LT ++ +F HD +P Sbjct: 343 VCFDTETTSLDPLT----------AKLVGMSFSIKAGEAAYLPLTHDYPGAPDQLPFAAT 392 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKA 111 +K LEN + V N +++ VL + + TL+ + + Sbjct: 393 LARIKPLLENPAIKKVGQNLKYDKHVLANH-GIVLNGIA-HDTLLQSYVLESHRTHGMDD 450 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + G + I E + + A EY D VT ++ Sbjct: 451 LAMRH--------LGVQTITY----EQVAGKGAKQVSFSQVALEQASEYAAEDADVTLQL 498 Query: 172 FKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E + + TI G +D + + + + + L+Q Sbjct: 499 HENLYPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDNDMLNRQSHEIGQKLMALEQ 558 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF + G+ T +T + VL P + Sbjct: 559 QAYELAGQP-FNLGSPKQLQEILFGKLGIKPLKKTPSGTPSTDEDVLQELALDYPLPKVL 617 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + A TGR S QN+P + Sbjct: 618 LEYR-GLAKLKSTYTDKLPRMINPTTGRVHTSYSQAVA-VTGRLSSSDPNLQNIPVRTAE 675 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G +V AD + IE R++A ++ + Sbjct: 676 GRR-------------------------IREAFVAPAGGHIVSADYSQIELRIMAHLSQD 710 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF GED++ T A F V V+ +QR KV+ L Y A Sbjct: 711 DGLLTAFAAGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSA-----FGLAQ 765 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + A + ++ + +E + F G Sbjct: 766 NLGIERQAAQNYIERYFTRYPGVRDYMQNTRERAKAQGYVETFFGR-------------- 811 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 LW + P+G Sbjct: 812 ---RLW-----------------------------------VPEINSPNGMRRA------ 827 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 R +Q + D++ M+ K +++ VH Sbjct: 828 ----------GAERAAINAP------MQGTAADLIKLAMIAVQGWLESEKLATKLIMQVH 871 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E PD + L LM +PL AE + Sbjct: 872 DELVLEVPDNELALVKEKLPQLMQDVAK--LDVPLLAEVGVGSNW 914 >gi|318064432|gb|ADV36447.1| DNA polymerase I [Edwardsiella phage eiAU] gi|318064540|gb|ADV36499.1| DNA polymerase I [Edwardsiella phage eiDWF] gi|318064644|gb|ADV36551.1| DNA polymerase I [Edwardsiella phage eiMSLS] Length = 735 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 244/735 (33%), Positives = 349/735 (47%), Gaps = 67/735 (9%) Query: 4 LFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWD--CVHDPV------- 52 LF+DFET S DL K G YAE ++L ++ FDD P ++WD C Sbjct: 5 LFLDFETFSEADLKKVGAYAYAEHDSTEILLASYAFDDGPAKVWDATCASGESDIDLDNN 64 Query: 53 -MPQVLKEALENTD---VTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107 P L L V +V HN F+R +++ C LDIP T+V A + LP Sbjct: 65 SAPDDLLRGLRRAKRGRVKLVMHNGLMFDRLIIRECLGLDIPPEHIHDTMVQAFRHALPG 124 Query: 108 ALKAVGEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGD 164 +L + E L + + K + GK LI RFCK R ++ H + W+ F Y + D Sbjct: 125 SLDKLCEVLNVDADLAKDKAGKALIKRFCKPTPKNYKIRRYDRNTHPDEWKQFKHYARND 184 Query: 165 VTVTREIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 +T REI+ ++ KE E+ LDQ INDRG+ VD LA V R +L + Sbjct: 185 ITAMREIYYKMPSWGEIDKENEILALDQRINDRGFYVDTDLAKAATAAVAAARAELQEAA 244 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 ++ G ++ + L L+ + + ++T + + L +A QV R+ Sbjct: 245 QATYGGGLTGADFLPLLRDLAPAHH---IPNAQKSTLGDL-LDDADLPDEARQVIEMRLG 300 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A+ +A K L+ M++DGR RG LQ+ GA RT RW+G F PQNL R + L + Sbjct: 301 AASTASTKYAPLLNGMSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYFKEKPLARG 360 Query: 343 ITHLPTSITSD-PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 I L D +++ + VR C+I + GKKLVVAD + +E R LAW+AGE L Sbjct: 361 IEALKRGTAEYAFDVMKLAASTVRGCIIPAPGKKLVVADYSNVEGRGLAWLAGEDSALDT 420 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G D+Y T + F ++P V +R IGK EL LGY GG AF + GL+L Sbjct: 421 FRAGLDIYKVTAGKMFGISPDDVDGYRRQIGKACELGLGYGGGVAAFLTFSKNLGLDLEE 480 Query: 462 FA------------HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 A + ++ + +++ + C+ +K+ Sbjct: 481 MAVTMAGTFPDYHWRAALRAYEFMKLQEVKRKPLPGKKDDRTTVVLSKKAWLTCDCIKRM 540 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARK-----------RRDVPLVYMKKDKNNL 558 WR+ H R + W +L +A I+N A R + L K N L Sbjct: 541 WRESHPRTVQFWYDLEEACLMAIDNPGASYWAGAKVRQDGKRAIRIERTLTRSGKPGNWL 600 Query: 559 ILMLPSGRSLVYRDVG------------------NNRSYLNTTTRQLTREYTYGGKLTEN 600 + LPSGR L Y +G N TRQ ++TYGGKL EN Sbjct: 601 KIELPSGRILSYPGIGVSMEKTNEDDPGEKARPRIKYRGENQLTRQWGWQHTYGGKLAEN 660 Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660 + QA+ RDILA M+ AGY+I+L+VHDE++ ETPDT E+N + L LM P+WAKG Sbjct: 661 VTQALCRDILAWCMLPVDNAGYEIILSVHDELITETPDTAEYNVAELERLMCDLPAWAKG 720 Query: 661 LPLKAEGYESKRYRK 675 PLKAEG+E RY+K Sbjct: 721 FPLKAEGWEGYRYKK 735 >gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015] gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015] Length = 900 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 100/707 (14%), Positives = 199/707 (28%), Gaps = 170/707 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + + HD + Sbjct: 324 SFDTETTSLNYM----------QAEIVGVSFAVEYNKAAYVPLGHDYPGAPEQLDRDAVL 373 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+T V + +++ VL +++ T++ + + + Sbjct: 374 NALKPLLEDTGKAKVGQHLKYDKNVLARY-GIELKGIA-HDTMLASYVLNSVAGRHDMDS 431 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L E + ++ Y D +T ++ Sbjct: 432 LAERY------------LDRHTVHYEDIAGKGAKQLTFNQIDLEQAAPYAAEDADITLQL 479 Query: 172 FKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E L + I G VD + +Q + + ++ Sbjct: 480 HRELWPKLQTEPSLERVYQSLEVPLVDVLARIEQNGVKVDADALYAQSQELAEGMRQAEE 539 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKL-TPQAIQ 275 + + ++L+ LF + GL +T + VL P Sbjct: 540 AAHNEAG-ESFNLGSPKQLQAILFEKQGLPVVRKTPKGQPSTAEDVLEELAAQGHPLPQW 598 Query: 276 VFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + R S+ + L + ++ GR+ + A+ TGR S QN+P S Sbjct: 599 ILRYR-ALSKLKSTYTDKLPQLIDSKTGRVHTSYHQAVAA-TGRLSSSDPNLQNIPIRSE 656 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R +A G K++ AD + IE R++A ++G Sbjct: 657 EGRR-------------------------IREAFVAEPGHKILAADYSQIELRIMAHLSG 691 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ ++AF+ G D++ T + F V +V +QR K + Sbjct: 692 DETLIRAFKEGRDIHQATASEVFGVPLDEVESEQRRRAKAVN--------------FGLI 737 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ A + + + +++ Sbjct: 738 YGMS------------------------------AFGLAKQLGISRGEAQGYVDTYFERY 767 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + + + + GR L ++ Sbjct: 768 PGVRDYMERTREQARE--------------------------QGYVETEFGRRLYLPEIQ 801 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 + R +Q + DI+ M+ A +V+ V Sbjct: 802 SRNVPRRQH---AERTAINAP------MQGTAADIIKRAMIAIHDALEKELPDVRMVMQV 852 Query: 629 HDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRYR 674 HDE+V E P+ L M + L E + + Sbjct: 853 HDELVFEVPEDQAKQTQALVETKMVEAAD--LRVALDVESDIADSWG 897 >gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1] gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1] gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1] gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1] Length = 994 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 513 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 560 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 561 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 620 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 621 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 679 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 680 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 739 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 740 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 774 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 775 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 824 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 825 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 850 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 851 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 884 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 885 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 935 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 936 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990 >gi|118591476|ref|ZP_01548873.1| DNA polymerase I [Stappia aggregata IAM 12614] gi|118435804|gb|EAV42448.1| DNA polymerase I [Stappia aggregata IAM 12614] Length = 996 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 110/716 (15%), Positives = 200/716 (27%), Gaps = 175/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + D ET S A ++ + + H Sbjct: 407 YVSFDTETTSLD----------AMQAELVGVSLSTEPGKACYVPLGHVDGEGDLLGGGGL 456 Query: 51 -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 VLK LE+ V +A N ++ V+ I I + T++L+ + Sbjct: 457 VEGQIPLKDALDVLKPMLEDRSVLKIAQNLKYDWLVMTRY---GIDITPFDDTMLLSYTV 513 Query: 104 GLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + E L + + + A Y Sbjct: 514 DAGKGGNGMDELSER------------WLDHKPIPFKEICGSGKSMITFDKVAIDKATAY 561 Query: 161 CKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 D VT ++ L+P + E+ + + + RG VD + L+ Sbjct: 562 AAEDADVTLRLWLILKPRLASERMATVYETLERPMVPVLARMEKRGISVDRQMLSRLSGE 621 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266 + E+ L + ++L LF + GL T+ +T +VL Sbjct: 622 FAQGMAGKESEIYELAG-ENFNIGSPKQLGDILFGKMGLPGGKKTKTGAWSTSAQVLEDL 680 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + + + S+ + L +N + T L A+ TGR S Sbjct: 681 AAEGHELPSRIVSWRQLSKLKSTYTDALPGYINPETGRVHTSYALAATTTGRLSSSEPNL 740 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P + + +R IA +G KL+ AD + IE Sbjct: 741 QNIPVRTEEGRK-------------------------IRKAFIAEKGHKLISADYSQIEL 775 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA MA KAF+ G D++ T + F + R K + Sbjct: 776 RVLAHMADIPQLKKAFDDGLDIHAMTASEMFGTPIEGMDPMVRRRAKAINF--------- 826 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ A + Sbjct: 827 -----GIIYGIS------------------------------AFGLANQLGISRGEAGDY 851 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 K + ++ + + + + N + GR Sbjct: 852 IKTYFERFPGIKDYMEAIKKQVH--------------------------ANGYVTTIFGR 885 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KA 620 Y +V + R +Q + DIL M+ K Sbjct: 886 KAHYPEVNTKNPNMR---AFYERAAINAP------IQGSAADILRRAMVRMENRLEGSKL 936 Query: 621 GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E PD ++ +M + P+ +PL+ + + + Sbjct: 937 DAQMLLQVHDELIFEVPDAQVETTIPVIKDVMENACDPALKLSVPLQVDARAANNW 992 >gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33] gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33] gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] Length = 994 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 513 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 560 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 561 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 620 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 621 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 679 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 680 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 739 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 740 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 774 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 775 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 824 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 825 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 850 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 851 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 884 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 885 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 935 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 936 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990 >gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513] gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513] Length = 994 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 513 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 560 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 561 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 620 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 621 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 679 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 680 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 739 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 740 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 774 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 775 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 824 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 825 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 850 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 851 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 884 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 885 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 935 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 936 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990 >gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M] gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] Length = 994 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 100/715 (13%), Positives = 205/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 513 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 560 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 561 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 620 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 621 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 679 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 680 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 739 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 740 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 774 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA +A +AF G D++ T + F V + + R K + Sbjct: 775 ILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 824 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 825 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 850 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 851 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 884 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 885 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 935 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 936 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990 >gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686] gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686] Length = 995 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 407 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 456 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 457 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 513 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 514 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 561 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 562 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 621 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 622 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 680 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 681 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 740 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 741 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 775 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 776 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 825 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 826 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 851 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 852 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 885 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 886 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 936 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 937 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 991 >gi|253998100|ref|YP_003050163.1| DNA polymerase I [Methylovorus sp. SIP3-4] gi|253984779|gb|ACT49636.1| DNA polymerase I [Methylovorus sp. SIP3-4] Length = 918 Score = 438 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 118/705 (16%), Positives = 202/705 (28%), Gaps = 168/705 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMP---- 54 + D ET S LT ++ +F HD +P Sbjct: 343 VCFDTETTSLDPLT----------AKLVGMSFSIKAGEAAYLPLTHDYPGAPDQLPFAAT 392 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKA 111 +K LEN + V N +++ VL + + TL+ + + Sbjct: 393 LARIKPLLENPAIKKVGQNLKYDKHVLANH-GIALNGIA-HDTLLQSYVLESHRTHGMDD 450 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + G + I E + + A EY D VT ++ Sbjct: 451 LAMRH--------LGVQTITY----EQVAGKGAKQVSFSQVALEQASEYAAEDADVTLQL 498 Query: 172 FKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E + + TI G +D + + + + + L+Q Sbjct: 499 HENLYPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDNDMLNRQSHEIGQKLMALEQ 558 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF + G+ T +T + VL P + Sbjct: 559 QAYELAGQP-FNLGSPKQLQEILFGKLGIKPLKKTPSGTPSTDEDVLQELALDYPLPKVL 617 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + A TGR S QN+P + Sbjct: 618 LEYR-GLAKLKSTYTDKLPRMINPTTGRVHTSYSQAVA-VTGRLSSSDPNLQNIPVRTAE 675 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G +V AD + IE R++A ++ + Sbjct: 676 GRR-------------------------IREAFVAPAGGHIVSADYSQIELRIMAHLSQD 710 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF GED++ T A F V V+ +QR KV+ L Y A Sbjct: 711 DGLLTAFAAGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSA-----FGLAQ 765 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + A + ++ + +E + F G Sbjct: 766 NLGIERQAAQNYIERYFTRYPGVRDYMQNTRERAKAQGYVETFFGR-------------- 811 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 LW + P+G Sbjct: 812 ---RLW-----------------------------------VPEINSPNGMRRA------ 827 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 R +Q + D++ M+ K +++ VH Sbjct: 828 ----------GAERAAINAP------MQGTAADLIKLAMIAVQGWLESEKLATKLIMQVH 871 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E PD + L LM +PL AE + Sbjct: 872 DELVLEVPDNELALVKEKLPQLMQDVAK--LDVPLLAEVGVGSNW 914 >gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94] gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1] gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94] gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1] Length = 994 Score = 438 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 513 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 560 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 561 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 620 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 621 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 679 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 680 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 739 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 740 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 774 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 775 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 824 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 825 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 850 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 851 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 884 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 885 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 935 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 936 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990 >gi|157163334|ref|YP_001460652.1| DNA polymerase I [Escherichia coli HS] gi|157069014|gb|ABV08269.1| DNA polymerase I [Escherichia coli HS] Length = 928 Score = 438 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 103/704 (14%), Positives = 206/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N R T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTRRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|182679659|ref|YP_001833805.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039] gi|182635542|gb|ACB96316.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039] Length = 1043 Score = 438 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 109/716 (15%), Positives = 205/716 (28%), Gaps = 176/716 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 L ID ET S + + + + H Sbjct: 454 LAIDTETTSLDPML----------ADLAGLSLCAEPGKAFYVPVGHTSGEGQDLFEGKGL 503 Query: 51 -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 V+ + LK LE+ + + N ++ VLK + + TL+L+ Sbjct: 504 LPGQLPIGVVLERLKPLLEDPSILKIGQNVKYDWIVLKQH---GVEMRPLDDTLLLSYVL 560 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + E G + I R A EY Sbjct: 561 DAGLTDHGMDVLSEKH--------LGHKPIPFSA----VAGSGRTFIGFARVAIDKATEY 608 Query: 161 CKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQI 210 D VT +++ L+P E + + + + RG +D L L+ Sbjct: 609 AAEDADVTLRLWRVLKPRLPAEKMTTVYETLERPMIDVLARMERRGVAIDPPLLGRLSSD 668 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266 + + + E+ L + ++L LF + GL T +T VL Sbjct: 669 FAQDMARYEAEIYELAG-EKFNLGSPKQLGDILFGKLGLPGAKKTATGAWSTAAGVLEDL 727 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + + + ++ + L +N T L A+ TGR S Sbjct: 728 AEQGVDLAARILDWRQLAKLKSTYTDALPNYINPSSGRVHTSYALAATTTGRLSSSEPNL 787 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P + + + +R IA G+KLV AD + IE Sbjct: 788 QNIPVRNEAGRK-------------------------IRRAFIAPPGRKLVSADYSQIEL 822 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA +A + AF D++ T + F V + + R K + Sbjct: 823 RLLAHIADIKSLKNAFAENLDIHAMTASEMFGVPVEGMPSEIRRRAKAINF--------- 873 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ A+ + Sbjct: 874 -----GIIYGISAFGLANQLAI------------------------------PREEAAAY 898 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 K + ++ + ++ + + N + GR Sbjct: 899 IKKYFERFPGIRAYMDDTKKKARE--------------------------NGYVETIFGR 932 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KA 620 Y + + R +Q + DI+ M++ K Sbjct: 933 KCHYPRIKASNPSERAL---NERAAINAP------IQGSAADIIRRAMIHMEAALAAEKL 983 Query: 621 GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673 ++L VHDE++ E PD + +++ +M P A +PL+ + ++ + Sbjct: 984 SAQMLLQVHDELIFEVPDDEVEATIAVVRKIMVEAPLPAVHLSVPLQVDAKAAQNW 1039 >gi|88705360|ref|ZP_01103071.1| DNA polymerase I [Congregibacter litoralis KT71] gi|88700450|gb|EAQ97558.1| DNA polymerase I [Congregibacter litoralis KT71] Length = 909 Score = 438 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 104/701 (14%), Positives = 194/701 (27%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 D ET S Y E ++ +F + H + Sbjct: 334 AFDTETTSLN---------YME-ADIVGLSFAVERGEAAYVPLAHSYPGAPAQLDRDAIL 383 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ + N ++ +VL ++ + T++ + Sbjct: 384 AALKPLLEDPAKPKLGQNLKYDASVLARY-DIHMQGIA-FDTMLESYVLDSTGT------ 435 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + K L E + + G Y D VT + + Sbjct: 436 --RHDMDSLAL-KYLGRSTTHFEDVAGKGAKQITFDQVGIEQAGPYAAEDAEVTLALHET 492 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + + G +D ++ + L++E Sbjct: 493 LWPKLQESAGLASVFSDIELPLVPVLSRMERTGALLDEERLWEQSRELGGRLQALEEEAH 552 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 +L V + ++L LF + L + T +T + VL P + + Sbjct: 553 NLAGQ-VFNLGSPKQLGQILFEKLELPVIKKTPKGAPSTAEEVLQELALDYPLPKLLIEH 611 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N T + TGR S QN+P + Sbjct: 612 R-GLSKLKSTYTDKLPGMINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRR- 669 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA+EG ++V AD + IE R++A ++ + L Sbjct: 670 ------------------------IRQAFIAAEGYQVVAADYSQIELRIMAHLSKDAGLL 705 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF D++ T A F V+ V+ +QR K + G++ Sbjct: 706 EAFRENLDVHSATAAEVFGVSLDAVSGEQRRKAKAINF--------------GLIYGMS- 750 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + +R + +++ V E Sbjct: 751 -----------------------------AFGLARQLRLDRGEAQRYIDVYFERYPGVRE 781 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + GR L ++ Sbjct: 782 YMDNTRALAHE--------------------------QGYVETLFGRRLYLPEINVRNKN 815 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633 R +Q + DI+ M+ + +++ VHDE+V Sbjct: 816 RQQA---AERTAINAP------MQGTAADIIKRAMITVDRWIADDSVDAKMIMQVHDELV 866 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + L M++ A +PL E + Sbjct: 867 LEVAEDQLDPVCDELCKQMSAAAELA--VPLLVEVGRGANW 905 >gi|254713302|ref|ZP_05175113.1| DNA polymerase I [Brucella ceti M644/93/1] gi|254716344|ref|ZP_05178155.1| DNA polymerase I [Brucella ceti M13/05/1] Length = 978 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 497 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445] gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445] Length = 978 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 390 ILAFDTETTSLDPM----------QGELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 497 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|254707180|ref|ZP_05169008.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|254709275|ref|ZP_05171086.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|256030798|ref|ZP_05444412.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] gi|256060266|ref|ZP_05450441.1| DNA polymerase I [Brucella neotomae 5K33] gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915] gi|260169702|ref|ZP_05756513.1| DNA polymerase I [Brucella sp. F5/99] gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99] gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915] gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99] Length = 978 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 497 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906] gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906] Length = 949 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 107/702 (15%), Positives = 220/702 (31%), Gaps = 162/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ D +I +F + HD + Sbjct: 373 AFDTETDSLNNI----------DARLIGLSFAVEPGKAAYIPLRHDYLDAPEQLPVDEVL 422 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ + + N F+R +++ +++ + T++ + S+ Sbjct: 423 TALKPILEDKTILKIGQNLKFDRGIMEN-EGIELNGI-YFDTMLESYVLNSVSS------ 474 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + E K L + E ++ Y D +T + + Sbjct: 475 --RHDMDTLAE-KHLNHKTTTFEEIAGKGKGQLTFNQIEVEQATLYAAEDADITLLLHQA 531 Query: 175 LEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + + +G +D + +Q + ++++E Sbjct: 532 LYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLAEIEKETF 591 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 +L + ++L+ LF + L + T +T + VL + + + Sbjct: 592 ALAGQ-EFNLSSPKQLQEILFEKLNLPIIKKTPKGAPSTNEEVLEALAHSHELPRLILEH 650 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +NS + T + TGR S QN+P + Sbjct: 651 R-GLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRR- 708 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I +G K+V AD + IE R++A ++ ++ L Sbjct: 709 ------------------------IRQAFIVRDGFKIVAADYSQIELRIMAHLSQDKGLL 744 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T + F + +VT +QR K + G++ Sbjct: 745 DAFAQGKDIHRATASEVFGIPLDEVTAEQRRSAKAINFG--------------LIYGMSA 790 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + +R + +++ V + Sbjct: 791 FGLSQQI------------------------------GVERKEAQRYMDLYFERYPGVLD 820 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + +Q + G GR L ++ + + Sbjct: 821 YM---ERTRKQASQQGYVETL-----------------------DGRRLYLPEINSKNAI 854 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEI 632 + RE +Q + DI+ + M+ +++ VHDE+ Sbjct: 855 RR---KASEREAINAP------MQGTAADIIKKAMIAVDNWICHECPDDVHMIMQVHDEL 905 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E ++ A +M++ LM S+ A +PLK E + Sbjct: 906 VFEVRESYLEKANAMIHKLMESSMELA--IPLKVEVGVGNNW 945 >gi|254700935|ref|ZP_05162763.1| DNA polymerase I [Brucella suis bv. 5 str. 513] Length = 978 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 497 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541] gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541] Length = 934 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 106/701 (15%), Positives = 209/701 (29%), Gaps = 159/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD + Sbjct: 357 AFDTETDSLD----------TQEARLVGMSFAIEAGHAAYLPIGHDYLDAPVQLSLDDVI 406 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 V+K LEN + + N ++ VL+ +++ T++ + + + Sbjct: 407 AVMKPILENEKIGKIGQNLKYDAEVLENY-GIELKGIA-FDTMLESYVLNSVAGMG---- 460 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + + L + E + ++ Y D VT + + Sbjct: 461 --RHDMDSLADRH-LNHKTVSFEEIAGKGKKQLTFNQIPLEQAANYAAEDADVTLLLHQA 517 Query: 175 LEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + + +G +D ++I+ +L+++ Sbjct: 518 LFPQLEEEPKLAHVFQNIEMPLVPVLVRMERKGVLIDAPTLAAQSKIITARLAELEKQAF 577 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L + ++L+T LF + L + T + T + VL + + Sbjct: 578 ELAG-EEFNLASPKQLQTILFEKLQLPVIKKTPSGAASTNEEVLEELALNHELPKLLLEH 636 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 637 R-SLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSRDPNLQNIPVRTEEGRR- 694 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA +G K++ AD + IE R++A ++ ++ L Sbjct: 695 ------------------------IRQAFIARKGYKVMAADYSQIELRIMAHLSQDKGLL 730 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F V QVT DQR K + G++ Sbjct: 731 TAFAEGKDIHKATAAEVFGVPLDQVTSDQRRSAKAINF--------------GLIYGMS- 775 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + +R + +++ V Sbjct: 776 -----------------------------AFGLARQLGIPRGEAQRYMDLYFERYPGVLR 806 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + GR L D+ ++ Sbjct: 807 YMENTRLQA--------------------------SEQGYVETLEGRRLYLADIKSSNGM 840 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 + RE +Q + DI+ + M+ K D+++ VHDE+V Sbjct: 841 RR---KAAEREAINAP------MQGTAADIIKKAMIAVDHWLQTEKPEADMLMQVHDELV 891 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E +++ + + LM + +PLK E + Sbjct: 892 FEVKESELEKVQAKVQELMEQSMK--LDVPLKVEVGVGMNW 930 >gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198] gi|225204183|gb|EEG86537.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198] Length = 949 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 110/702 (15%), Positives = 221/702 (31%), Gaps = 162/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ D +I +F + H+ + Sbjct: 373 AFDTETDSLNNI----------DARLIGMSFAIEPGKAAYIPLRHEYLDAPEQLPVNDVL 422 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ ++ + N F+R +++ +++ T++ + S Sbjct: 423 AALKPILEDKNILKIGQNLKFDRGIMEN-EGIELNGIH-FDTMLESYVLNSVSN------ 474 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + E K L + E ++ Y D +T + + Sbjct: 475 --RHDMDTLAE-KHLNHKTTTFEEIAGKGKGQLTFNQIEVEQATLYAAEDADITLLLHQA 531 Query: 175 LEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + + +G +D + +Q + ++++E Sbjct: 532 LYPQIEAIEPLKHVYRDIEMPLVPVLSRMERKGVLIDAQVLAVQSQEITQRLAEIEKETF 591 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 +L + ++L+ LF + L + T +T + VL + + Sbjct: 592 ALAGQ-EFNLSSPKQLQEILFDKLQLPVIKKTPKGAPSTNEEVLEELAHSHELPRLILEH 650 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +NS + T + TGR S QN+P + Sbjct: 651 R-GLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRR- 708 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA EG K+V AD + IE R++A ++ ++ L Sbjct: 709 ------------------------IRQAFIAREGFKIVAADYSQIELRIMAHLSQDKGLL 744 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T + F + +VT +QR K + G++ Sbjct: 745 DAFAQGKDIHRATASEVFGIPLEEVTSEQRRSAKAINF--------------GLIYGMSA 790 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + +R + +++ V + Sbjct: 791 FGLSQQI------------------------------GVERREAQRYMDLYFERYPGVLD 820 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + +Q E G GR L ++ + + Sbjct: 821 YM---ERTRKQASEQGYVETLE-----------------------GRRLYLPEINSKNAI 854 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEI 632 + RE +Q + DI+ + M+ A +++ VHDE+ Sbjct: 855 RR---KASEREAINAP------MQGTAADIIKKAMIAVDNWICNECPADVHMIMQVHDEL 905 Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E ++ NA++ ++ LM S+ A +PLK E + Sbjct: 906 VFEVRESYLENANIMIHKLMESSMELA--IPLKVEVGVGNNW 945 >gi|256045914|ref|ZP_05448788.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] Length = 978 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 100/715 (13%), Positives = 205/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 497 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA +A +AF G D++ T + F V + + R K + Sbjct: 759 ILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330] gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365] gi|254705303|ref|ZP_05167131.1| DNA polymerase I [Brucella suis bv. 3 str. 686] gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40] gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330] gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365] gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40] Length = 979 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 391 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 440 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 441 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 497 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 498 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 545 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 546 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 605 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 606 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 664 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 665 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 724 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 725 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 759 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 760 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 809 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 810 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 835 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 836 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 869 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 870 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 920 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 921 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 975 >gi|256158819|ref|ZP_05456680.1| DNA polymerase I [Brucella ceti M490/95/1] gi|256254204|ref|ZP_05459740.1| DNA polymerase I [Brucella ceti B1/94] Length = 978 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 497 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457] gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9] gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457] gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9] gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28] gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90] Length = 978 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 497 AGTDSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A] gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A] gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] Length = 994 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 206/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 513 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 560 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 561 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 620 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 621 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 679 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 ++ + + ++ + L +N + T + ++ TGR S Q Sbjct: 680 AEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 739 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 740 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 774 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 775 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 824 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 825 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 850 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 851 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 884 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 885 THYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 935 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 936 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990 >gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840] gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840] Length = 978 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 497 AGTGRHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|260599983|ref|YP_003212554.1| DNA polymerase I [Cronobacter turicensis z3032] gi|260219160|emb|CBA34515.1| DNA polymerase I [Cronobacter turicensis z3032] Length = 966 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 103/706 (14%), Positives = 211/706 (29%), Gaps = 167/706 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52 + +D ET S +LT ++ +F + HD Sbjct: 389 VVAVDTETDSLDNLT----------ANLVGISFATEPGLAAYIPVAHDYLDAPDQLPRDR 438 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSAL 109 + ++LK LE+ + V N F+R +L+ +++ T++ + + Sbjct: 439 VLELLKPLLEDESLVKVGQNLKFDRGILQNY-GIELRGI-VFDTMLESYILDSVSGRHDM 496 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 ++ L E ++ G Y D VT Sbjct: 497 DSLSSR------------WLKHTTITFEQIAGKGKNQLTFNQIDLEQAGRYAAEDADVTL 544 Query: 170 EIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ ++ P + L + I G +D A+ H +Q + ++ +L Sbjct: 545 QLHLKMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDPAVLHAHSQEIALKLAEL 604 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274 +Q+ + + ++L+T LF + G+ T +T + VL P Sbjct: 605 EQKAHEIAG-EPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPK 663 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + R ++ + L + +N T + TGR S QN+P + Sbjct: 664 VILQYR-GLAKLKSTYTDKLPQMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRND 722 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA E +V AD + IE R++A ++ Sbjct: 723 EGRR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSR 757 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + V+ +QR K + Sbjct: 758 DKGLLSAFAEGKDIHRATAAEVFGLPLESVSNEQRRSAKAINF--------------GLI 803 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + + ++ + +++ Sbjct: 804 YGMS------------------------------AFGLSRQLNIPRKESQKYMDLYFERY 833 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V E + ++ + GR L D+ Sbjct: 834 PGVLEYMERTRKQAKE--------------------------QGYVETLDGRRLYLPDIN 867 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628 + + + +Q + DI+ M+ + +++ V Sbjct: 868 ASNAARRAGAER---------AAINAPMQGTAADIIKRAMIAVDGWLEKEQPRVKMIMQV 918 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E D ++ LM ++ +PL E + Sbjct: 919 HDELVFEVHKDDVEAVSQKIHELMENSMQ--LDVPLLVEVGSGVNW 962 >gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026] gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026] Length = 978 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 497 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 605 VQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|331665510|ref|ZP_08366408.1| DNA polymerase I (POL I) [Escherichia coli TA143] gi|331057195|gb|EGI29185.1| DNA polymerase I (POL I) [Escherichia coli TA143] Length = 928 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 101/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + ++ + GR L D+ ++ Sbjct: 798 VLQYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|256112629|ref|ZP_05453550.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] Length = 696 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 108 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 157 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 158 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 214 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 215 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 262 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 263 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 322 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 323 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 381 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 382 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 441 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 442 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 476 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 477 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 526 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 527 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 552 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 553 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 586 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 587 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 637 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 638 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 692 >gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941] gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308] gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19] gi|254690432|ref|ZP_05153686.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|254696548|ref|ZP_05158376.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|254731463|ref|ZP_05190041.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|256258684|ref|ZP_05464220.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038] gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196] gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941] gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA polymerase, family A:5'-3' exonuclease:3'-5' exonuclease:Hel [Brucella melitensis biovar Abortus 2308] gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19] gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038] gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196] Length = 978 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 206/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 497 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 ++ + + ++ + L +N + T + ++ TGR S Q Sbjct: 664 AEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 869 THYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|262041646|ref|ZP_06014839.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040999|gb|EEW42077.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 927 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 106/701 (15%), Positives = 210/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD + Sbjct: 352 AFDTETDSLDNIS----------ANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 +LK LE+ V V N ++R +L ++++ T++ + L +V Sbjct: 402 ALLKPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIA-FDTMLESYI------LDSVAG 453 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 454 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 510 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H +Q + +L+Q Sbjct: 511 MWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 570 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 571 EIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 629 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 630 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 687 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 688 ------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 723 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + V+ +QR K + G++ Sbjct: 724 TAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINF--------------GLIYGMS- 768 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + ++ + +++ V E Sbjct: 769 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 799 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ Sbjct: 800 YMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSSNGA 833 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 + +Q + DI+ M+ K +++ VHDE+V Sbjct: 834 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELV 884 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + ++ LM ++ + A +PL E + + Sbjct: 885 FEVHKDELDAVSKKIHELMENSTTLA--VPLLVEVGSGENW 923 >gi|119773235|ref|YP_925975.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] gi|119765735|gb|ABL98305.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] Length = 923 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 111/705 (15%), Positives = 210/705 (29%), Gaps = 166/705 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + +D ET S + ++ +F + HD Sbjct: 346 IAVDTETTSLDYM----------QAELVGLSFAIEAGKAAYLPLGHDYPGAPSQLPREAT 395 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAV 112 LK LEN D+ V N ++ +VL + + T++ + ++ Sbjct: 396 LAKLKPLLENPDIKKVGQNLKYDMSVLANA-GIQLKGVA-FDTMLESYVFNSVASRHDMD 453 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 G ALK K +E + ++ A Y D +T + Sbjct: 454 GLALKYLGHKNISFEE----------IAGKGAKQLTFNQIALEQAAPYAAEDADITLRLH 503 Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P E L + I RG +D L ++ + + +L+Q Sbjct: 504 QHLWPRLSKEEGLESVFTELELPLIEVLSDIERRGVLIDSMLLGQQSEELARKIDELEQH 563 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + + ++L+ F + G + T +T + VL P + Sbjct: 564 AHEIAG-EPFNLSSTKQLQELFFTKLGYPVIKKTPKGAPSTAEEVLVELALDYPLPKIIL 622 Query: 278 NNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R ++ + L +N GR+ + A+ TGR S QN+P + Sbjct: 623 EHR-SLTKLKSTYTDKLPLMINGRTGRVHTSYHQANAA-TGRLSSSDPNLQNIPIRTEEG 680 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R +A EGK+++ AD + IE R++A ++ ++ Sbjct: 681 RR-------------------------IRQAFVAPEGKRILAADYSQIELRIMAHLSQDE 715 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF G+D++ T A F+VA VT +QR K + G Sbjct: 716 GLLRAFAEGKDIHRATAAEVFDVAFETVTSEQRRRAKAVN--------------FGLIYG 761 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + + + +++ Sbjct: 762 MSAFGLARQLDI------------------------------PRNEAQSYIDTYFKRYPG 791 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + E + GR L ++ + Sbjct: 792 VLKYMEETRAMA--------------------------SEQGYVSTLFGRRLYLPEIRDR 825 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVH 629 + R +Q + DI+ + M+ +++ VH Sbjct: 826 NAMRRQA---AERAAINAP------MQGTAADIIKKAMIAIQHWIKTETQGEIQMIMQVH 876 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + LM + S +PL AE + Sbjct: 877 DELVFEVDADKADALKEKVCELMAAAAS--LDVPLLAEAGLGDNW 919 >gi|71276267|ref|ZP_00652545.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71900322|ref|ZP_00682457.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71162875|gb|EAO12599.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71729897|gb|EAO31993.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 273/726 (37%), Positives = 367/726 (50%), Gaps = 63/726 (8%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L+ D ET SP+ + G+ YAE ++LFA+ + PV++WDC MP+ L AL Sbjct: 10 ILWGDLETYSPVPIAH-GVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALH 68 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121 N V + HNS+F+RTVL +DIP+ RW ++ A ++ LP AL + E L++ + Sbjct: 69 NPAVLLYFHNSHFDRTVL-RHCGIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQ 127 Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++GK L+A FCK C R + H W F EY + DV R++ KRL + Sbjct: 128 AKAKDGKRLVALFCKPRPAHCTLRRATRDTHPTEWAQFVEYARRDVAAMRDVVKRLPSHN 187 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 EL W+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 188 YTGAELALWFLDQTINDRGVMVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L L E G+ L D+ + T +R L + L ++ + R +AS ++ K L+ Sbjct: 248 ALLHHLSTEHGVALPDMQQHTVERCL-DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S + I + D Sbjct: 307 TSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDD 366 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL------- 408 + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF + Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTW 426 Query: 409 ---------------------------------YVTTYARSFNVAPAQVTKDQRAIGKVM 435 Y YA SF +AP VTK+QR IGKV Sbjct: 427 HSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQ 486 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 ELALGY GG AF A+ ++L A P ++A +W + N Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL--PPLLLQEAVEALQWTKANQRPTFGL 544 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 AC+ K+AWR H ++ W L A I + + + M+ + Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPETA-----HTCCGITMQYSR 599 Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDI 609 L + LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+ Sbjct: 600 AWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDV 659 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669 LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG++ Sbjct: 660 LAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQ 719 Query: 670 SKRYRK 675 + RYRK Sbjct: 720 THRYRK 725 >gi|12001918|gb|AAG43102.1|AF038542_1 DNA polymerase I [Pseudomonas fluorescens] Length = 939 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 104/712 (14%), Positives = 200/712 (28%), Gaps = 168/712 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 D ET A+ ++ +F + H Sbjct: 352 KLFAFDTETT----------GIDAQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRD 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWICTLVLARSNG 104 + + LK LE+ + V ++ F+ +L C + + T++ + Sbjct: 402 TVLRALKPILEDPNKLKVGQHAKFDMNILANCAIGGDQNEGITVRGIA-FDTMLESYVLN 460 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 + + + + K L + + + A G Y D Sbjct: 461 STAT--------RHDMDSLAQ-KYLNHTTVSFQDIAGKGAKQLTFDQIALEQAGPYAAED 511 Query: 165 VTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 VT + + L E L + I +G VD L + + Sbjct: 512 ADVTLRLHQTLFEKLSAIPSLASVLTDIEIPLVPVLARIERQGAFVDADLLGIQSIELGN 571 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKL 269 + L++E + + ++L L+ + GL + T +T + VL+ + Sbjct: 572 KMVALEREAFEIAG-EEFNLGSPKQLGVILYEKLGLPVLKKTAKGQPSTAEEVLAKLAED 630 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQN 328 + +V S+ + L E +N GR+ + A TGR S QN Sbjct: 631 DHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-STGRLSSSDPNLQN 689 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +P + +R +A +G KL+ AD + IE R+ Sbjct: 690 IPVRTAEGRR-------------------------IRQAFVAPKGYKLLAADYSQIELRI 724 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++ ++ + AF D++ T A F V +VT DQR K + Sbjct: 725 MAHLSRDEGLMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINF----------- 773 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 G+ + + + Sbjct: 774 ---GLIYGMG------------------------------AQKLGKDIGVDTKTAKAYID 800 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + ++ V E + + + GR L Sbjct: 801 TYFARYPGVREYMDRTRAQA--------------------------ADQGFVETIFGRRL 834 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGY 622 D+ +N+ R +Q + DI+ + M+ Sbjct: 835 YLPDINSNKP---QERAAAERTAINAP------MQGTAADIIKKAMVAVDNWLCASGLDA 885 Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + + M+ +PL E + Sbjct: 886 KVILQVHDELVLEVREDLVDQVREEIRVHMSEAAK--LDVPLLVEVGVGNNW 935 >gi|260870580|ref|YP_003236982.1| DNA polymerase I [Escherichia coli O111:H- str. 11128] gi|300906177|ref|ZP_07123891.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1] gi|301303329|ref|ZP_07209453.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1] gi|301328175|ref|ZP_07221307.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1] gi|257766936|dbj|BAI38431.1| DNA polymerase I [Escherichia coli O111:H- str. 11128] gi|300402027|gb|EFJ85565.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1] gi|300841283|gb|EFK69043.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1] gi|300845357|gb|EFK73117.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1] gi|315254225|gb|EFU34193.1| DNA-directed DNA polymerase [Escherichia coli MS 85-1] Length = 928 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|218701437|ref|YP_002409066.1| DNA polymerase I [Escherichia coli IAI39] gi|218371423|emb|CAR19256.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli IAI39] Length = 928 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|331649706|ref|ZP_08350786.1| DNA polymerase I (POL I) [Escherichia coli M605] gi|330908181|gb|EGH36700.1| DNA polymerase 1 [Escherichia coli AA86] gi|331041339|gb|EGI13489.1| DNA polymerase I (POL I) [Escherichia coli M605] Length = 928 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|301023768|ref|ZP_07187505.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1] gi|300396890|gb|EFJ80428.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1] Length = 928 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|227885402|ref|ZP_04003207.1| DNA polymerase I [Escherichia coli 83972] gi|300937085|ref|ZP_07151949.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1] gi|300976637|ref|ZP_07173526.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1] gi|301046666|ref|ZP_07193796.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1] gi|227837660|gb|EEJ48126.1| DNA polymerase I [Escherichia coli 83972] gi|300301386|gb|EFJ57771.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1] gi|300410020|gb|EFJ93558.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1] gi|300457842|gb|EFK21335.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1] gi|307556005|gb|ADN48780.1| DNA polymerase I [Escherichia coli ABU 83972] gi|315292801|gb|EFU52153.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1] Length = 928 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|306813871|ref|ZP_07448047.1| DNA polymerase I [Escherichia coli NC101] gi|305852869|gb|EFM53316.1| DNA polymerase I [Escherichia coli NC101] Length = 928 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 101/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+ LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQNILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|53803295|ref|YP_114980.1| DNA polymerase I [Methylococcus capsulatus str. Bath] gi|53757056|gb|AAU91347.1| DNA polymerase I [Methylococcus capsulatus str. Bath] Length = 906 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 106/705 (15%), Positives = 202/705 (28%), Gaps = 169/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54 D ET S + VI +F + HD + Sbjct: 331 AFDTETSSLDYMR----------AEVIGLSFAVEPGAAAYVPLAHDYPGAPPQLDRAMVL 380 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 + L+ LE+ + + ++ VL + + R T++ + + + Sbjct: 381 ERLRPLLEDPGKAKLGQHLKYDANVLLNH-GIMLRGIR-HDTMLESYVLNSTATRHDMDS 438 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E + P R + Y D VT + Sbjct: 439 LAERY------------LDRKTLHYEDVAGKGAKQIPFARVSVEDACRYAAEDADVTLCL 486 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E L + I G VDV ++ ++ +++ Sbjct: 487 HRALWPRLESIPSLRAVYETIEIPLVPVLSRIERAGVLVDVYKLAEQSRELERRMAEVEA 546 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 E ++ + ++++T L+ + GL + T +T + VL + + Sbjct: 547 EARAVAG-ETFNLGSPKQIQTILYDKLGLPVIKKTPTGQPSTDESVLQDLAETFELPRLI 605 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R S+ + L +N GR+ + A+ TGR S QN+P + Sbjct: 606 LEYR-SLSKLKSTYTDKLPHQVNPVSGRVHTSYHQAVAA-TGRLSSSDPNLQNIPVRTEE 663 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G KL+ AD + IE R++A ++G+ Sbjct: 664 GRR-------------------------IRQAFVAPPGHKLLAADYSQIELRIMAHLSGD 698 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF D++ T A F VA +VT QR K + Sbjct: 699 ANLLAAFAEDADVHRATAAEVFGVALEEVTSSQRRSAKAIN--------------FGLIY 744 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + + ++ Sbjct: 745 GMS------------------------------AFGLAKQLGIQQKLAQGYIDLYFARYP 774 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + ++ + + GR L D+ + Sbjct: 775 GVRAYMDRTRESARE--------------------------LGYVETLFGRRLHVPDIQS 808 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVH 629 R +Q + DI+ M+ A +++ VH Sbjct: 809 RNGQRRQY---AERTAINAP------MQGTAADIIKRAMIALDAWIESSGAPLRMIMQVH 859 Query: 630 DEIVCETPDTDE-FNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + + + M+ A +PL + + Sbjct: 860 DELVFEVAEDFVSEATATVREHMSRAAELA--VPLMVDIGTGDNW 902 >gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661] gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661] Length = 928 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 110/703 (15%), Positives = 222/703 (31%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S L+ ++ +F + HD + Sbjct: 352 AFDLETDSLDTLS----------ANIVGISFAIEPGKAAYLPVAHDYLDAPAQLDRNSVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + LK LE+ + V N ++R VLK ++++ + T++ + + + Sbjct: 402 ERLKPLLEDPALLKVGQNLKYDRGVLKNY-DIELQGIK-FDTMLESYALSSVGS------ 453 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + + L + E + ++ Y D VT ++ + Sbjct: 454 --RHDMDTLSS-RWLNHKTVSFEEIAGKGKKQLTFNQIDLEQAAHYAAEDADVTLQLHLK 510 Query: 175 LEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P KEQ L + I G +D + ++ + + +L+Q+ Sbjct: 511 MWPELEKEQGPKEVFENIEMPLLTVISRIERNGVLIDQGILAAHSKELTIRLAELEQKAH 570 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 L + ++L+T LF + G+ T +T + VL+ P + N Sbjct: 571 ELAG-EPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVILEN 629 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L +N GR+ + + TGR S QN+P + Sbjct: 630 R-GLAKLKSTYTDKLPLMINPITGRVHTSYHQAV-TATGRLSSTDPNLQNIPVRNEEGRR 687 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IAS+G K+V AD + IE R++A ++ ++ Sbjct: 688 -------------------------IRQAFIASKGHKIVAADYSQIELRIMAHLSQDKGL 722 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G D++ T A F +A +VT +QR K + G++ Sbjct: 723 LSAFAEGMDIHRATAAEVFGMALDKVTGEQRRSAKAIN--------------FGLIYGMS 768 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + ++ + +++ V Sbjct: 769 ------------------------------AFGLSRQLNIGAGEAKKYMDLYFERYPGVL 798 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E Q + + GR L D+ + + Sbjct: 799 EYMESTRQQAAE--------------------------KGYVSTLDGRRLYLPDINASNA 832 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631 + R +Q + DI+ + M+ +++ VHDE Sbjct: 833 MRR---KAAERAAINAP------MQGTAADIIKKAMIAVDGWLTPQSAPDVKMIMQVHDE 883 Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ A + + LM ++ +PL+ + + Sbjct: 884 LVFEVKTSEVEAATAKIRDLMENSMK--LDVPLQVDVGVGDNW 924 >gi|226942232|ref|YP_002797305.1| DNA polymerase I [Azotobacter vinelandii DJ] gi|226717159|gb|ACO76330.1| DNA polymerase I [Azotobacter vinelandii DJ] Length = 908 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 107/702 (15%), Positives = 196/702 (27%), Gaps = 160/702 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53 + D ET S A+ ++ +F H + Sbjct: 331 IAFDSETTSLD----------AQQAELVGLSFAVAPLEAAYIPLAHSYMGVPDQLDRDAV 380 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 L+ LE+ V ++ ++ VL + +++ + T++ + + Sbjct: 381 LAALRPILEDPARAKVGQHAKYDMNVLA-HYGIEVRGVAY-DTMLESYVLDSTAT----- 433 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + K L + E + + A G Y D VT + + Sbjct: 434 ---RHDMDSLAL-KYLGQGTIRFEDIAGKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQ 489 Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L E L + I G VD L + + + +L++E Sbjct: 490 CLWQKLEAIPALAKVLKEIEMPLVPVLARIERHGALVDAKLLGEQSLELGEKLQQLEREA 549 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L L+ + GL + T +T + VL+ + QV Sbjct: 550 HELAG-EPFNLASPKQLGAILYDKLGLPVLSKTAKGQPSTAESVLADLAEQGYPLPQVIM 608 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 ++ + L + +N T + TGR S QN+P + Sbjct: 609 RHRSLNKLKGTYTDKLPQQINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTTEGRR 668 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A EG +LV AD + IE R++A +A + Sbjct: 669 -------------------------IRQAFVAPEGYRLVAADYSQIELRIMAHLAQDTSL 703 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF D++ T A F VAP V+ DQR K + G++ Sbjct: 704 LHAFRNDLDVHRATAAEVFGVAPEAVSADQRRSAKAINF--------------GLIYGMS 749 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + ++ V Sbjct: 750 ------------------------------AFGLARQIGVERKEAQAYIDRYFARYPGVL 779 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + GR L ++ + Sbjct: 780 AYMERTRAQAAE--------------------------QGYVETLFGRRLYLPEIHSKNG 813 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632 L + R +Q + DI+ M+ ++L VHDE+ Sbjct: 814 ALR---KAAERTAINAP------MQGSAADIIKRAMVTVDAWLLESGLDARMILQVHDEL 864 Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E + L M+ A +PL E + Sbjct: 865 VLEVREDQVEALKAGLLPRMSGAA--ALDVPLLVEAGVGGNW 904 >gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Vibrio angustum S14] gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14] Length = 923 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 96/708 (13%), Positives = 199/708 (28%), Gaps = 168/708 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 D ET +T V+ +F ++ HD Sbjct: 344 KAFAFDTETDGLDYMT----------ANVVGVSFAIEEGKAAYVPVAHDYLDAPAQLDRD 393 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + + LK LE+ + N F+ +++ +++ T++ + Sbjct: 394 WVLEQLKPLLEDPKQAKIGQNLKFDASIVARY-GIEMQGI-VFDTMLESYVFNSVVGRHD 451 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + ++ L + E + ++ G Y D +T Sbjct: 452 MDSLALRY------------LEHKNISFEEVAGKGKKQLTFNQIDLEQAGPYAAEDADIT 499 Query: 169 REIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + L P E L + + G VD L + + + Sbjct: 500 LRLHNTLYPKVEADDKLNHVFETIEMPLVPVLSRMERTGVYVDSMLLGAQSTEIAARLDE 559 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQA 273 ++++ + + ++L+ LF + GL T +T + VL P Sbjct: 560 IEKKAFEI-AEQEFNLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDYPLP 618 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + R ++ + L + +N T + TGR S QN+P + Sbjct: 619 KLLLEYR-GLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRN 677 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A G K++ D + IE R++A ++ Sbjct: 678 EEGRR-------------------------IRQAFVAQSGYKILAVDYSQIELRIMAHLS 712 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ L AF G+D++ T A ++ +V+ +QR K + Sbjct: 713 GDKALLDAFRHGKDIHAATAAEILSLDIEEVSSEQRRRAKAINF--------------GL 758 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ A + + + ++ Sbjct: 759 IYGMSAFGLAKQLDM------------------------------GRNEAQNYMNVYFER 788 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V E A + GR L D+ Sbjct: 789 YPGVLEYMESTRNAA--------------------------SEQGYVETLFGRRLYLPDI 822 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVL 626 + + R +Q + DI+ M+ + +++ Sbjct: 823 KSRNGLRR---KAAERAAINAP------MQGTAADIIKLAMIAVDGWVQQQPEGNVRLLM 873 Query: 627 TVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E ++ + + LM + +PL A+ + Sbjct: 874 QVHDELVFEVKESALEAVTASVKALMEQAAT--LDVPLIADTGYGDNW 919 >gi|110644203|ref|YP_671933.1| DNA polymerase I [Escherichia coli 536] gi|191173870|ref|ZP_03035390.1| DNA polymerase I [Escherichia coli F11] gi|300985836|ref|ZP_07177621.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1] gi|110345795|gb|ABG72032.1| DNA polymerase I [Escherichia coli 536] gi|190905828|gb|EDV65447.1| DNA polymerase I [Escherichia coli F11] gi|300306506|gb|EFJ61026.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1] gi|324006871|gb|EGB76090.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2] gi|324012590|gb|EGB81809.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1] Length = 928 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|281180926|dbj|BAI57256.1| DNA polymerase I [Escherichia coli SE15] Length = 928 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|110807452|ref|YP_690972.1| DNA polymerase I [Shigella flexneri 5 str. 8401] gi|110617000|gb|ABF05667.1| DNA polymerase I [Shigella flexneri 5 str. 8401] Length = 928 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------LGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|30064847|ref|NP_839018.1| DNA polymerase I [Shigella flexneri 2a str. 2457T] gi|30043107|gb|AAP18829.1| DNA polymerase I [Shigella flexneri 2a str. 2457T] gi|281603252|gb|ADA76236.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease [Shigella flexneri 2002017] gi|332751499|gb|EGJ81900.1| DNA polymerase I [Shigella flexneri K-671] gi|332753203|gb|EGJ83586.1| DNA polymerase I [Shigella flexneri 2747-71] gi|333013930|gb|EGK33292.1| DNA polymerase I [Shigella flexneri K-304] Length = 928 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------LGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|170683498|ref|YP_001746191.1| DNA polymerase I [Escherichia coli SMS-3-5] gi|170521216|gb|ACB19394.1| DNA polymerase I [Escherichia coli SMS-3-5] Length = 928 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 103/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LEN V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLENEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|332084081|gb|EGI89286.1| DNA polymerase I [Shigella boydii 5216-82] Length = 928 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|260846368|ref|YP_003224146.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009] gi|257761515|dbj|BAI33012.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009] Length = 928 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|331660412|ref|ZP_08361346.1| DNA polymerase I (POL I) [Escherichia coli TA206] gi|315300272|gb|EFU59508.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3] gi|331052361|gb|EGI24398.1| DNA polymerase I (POL I) [Escherichia coli TA206] Length = 928 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13] gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13] Length = 994 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 102/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 406 VLAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 LK LE+ + +A N ++ V++ I + T++++ Sbjct: 456 ENQIPLDAALAALKHVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 513 AGTGSHGMNPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 560 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 561 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 620 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 621 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 679 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 680 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 739 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 740 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 774 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 775 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 824 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 825 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 850 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 851 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 884 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 885 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 935 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ H+M + P+ + +PL+ + + + Sbjct: 936 ARMLLQVHDELIFEVPENEVEKTIPVVRHVMENAAMPAVSLAVPLRVDARAAHNW 990 >gi|215489197|ref|YP_002331628.1| DNA polymerase I [Escherichia coli O127:H6 str. E2348/69] gi|312969394|ref|ZP_07783596.1| DNA polymerase I [Escherichia coli 2362-75] gi|215267269|emb|CAS11718.1| fused DNA polymerase I 5'->3' exonuclease/3'->5'polymerase/3'->5' exonuclease [Escherichia coli O127:H6 str. E2348/69] gi|312285941|gb|EFR13859.1| DNA polymerase I [Escherichia coli 2362-75] Length = 928 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 101/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V ++ + GR L D+ ++ Sbjct: 798 VLGYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|323954361|gb|EGB50146.1| DNA polymerase I [Escherichia coli H263] Length = 928 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGRGENW 924 >gi|218550897|ref|YP_002384688.1| DNA polymerase I [Escherichia fergusonii ATCC 35469] gi|218358438|emb|CAQ91085.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia fergusonii ATCC 35469] Length = 928 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|16131704|ref|NP_418300.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Escherichia coli str. K-12 substr. MG1655] gi|74314369|ref|YP_312788.1| DNA polymerase I [Shigella sonnei Ss046] gi|89110164|ref|AP_003944.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and 3'->5' exonuclease [Escherichia coli str. K-12 substr. W3110] gi|157158243|ref|YP_001465344.1| DNA polymerase I [Escherichia coli E24377A] gi|170022122|ref|YP_001727076.1| DNA polymerase I [Escherichia coli ATCC 8739] gi|170083336|ref|YP_001732656.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B] gi|187733745|ref|YP_001882560.1| DNA polymerase I [Shigella boydii CDC 3083-94] gi|188493758|ref|ZP_03001028.1| DNA polymerase I [Escherichia coli 53638] gi|191169441|ref|ZP_03031178.1| DNA polymerase I [Escherichia coli B7A] gi|193063893|ref|ZP_03044979.1| DNA polymerase I [Escherichia coli E22] gi|193068096|ref|ZP_03049061.1| DNA polymerase I [Escherichia coli E110019] gi|194430447|ref|ZP_03062929.1| DNA polymerase I [Escherichia coli B171] gi|194440160|ref|ZP_03072207.1| DNA polymerase I [Escherichia coli 101-1] gi|209921336|ref|YP_002295420.1| DNA polymerase I [Escherichia coli SE11] gi|218556422|ref|YP_002389336.1| DNA polymerase I [Escherichia coli IAI1] gi|218697577|ref|YP_002405244.1| DNA polymerase I [Escherichia coli 55989] gi|238902931|ref|YP_002928727.1| DNA polymerase I [Escherichia coli BW2952] gi|253775502|ref|YP_003038333.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163815|ref|YP_003046923.1| DNA polymerase I [Escherichia coli B str. REL606] gi|256021501|ref|ZP_05435366.1| DNA polymerase I [Shigella sp. D9] gi|256026104|ref|ZP_05439969.1| DNA polymerase I [Escherichia sp. 4_1_40B] gi|293470175|ref|ZP_06664586.1| DNA polymerase I [Escherichia coli B088] gi|300819242|ref|ZP_07099442.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1] gi|300823683|ref|ZP_07103809.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7] gi|300919043|ref|ZP_07135589.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1] gi|300948178|ref|ZP_07162305.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1] gi|300958283|ref|ZP_07170427.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1] gi|301027901|ref|ZP_07191194.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1] gi|301648434|ref|ZP_07248167.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1] gi|307140557|ref|ZP_07499913.1| DNA polymerase I [Escherichia coli H736] gi|309797831|ref|ZP_07692214.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7] gi|331644592|ref|ZP_08345711.1| DNA polymerase I (POL I) [Escherichia coli H736] gi|331655544|ref|ZP_08356536.1| DNA polymerase I (POL I) [Escherichia coli M718] gi|331670705|ref|ZP_08371541.1| DNA polymerase I (POL I) [Escherichia coli TA271] gi|331675321|ref|ZP_08376071.1| DNA polymerase I (POL I) [Escherichia coli TA280] gi|331679970|ref|ZP_08380632.1| DNA polymerase I (POL I) [Escherichia coli H591] gi|332282738|ref|ZP_08395151.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Shigella sp. D9] gi|118825|sp|P00582|DPO1_ECOLI RecName: Full=DNA polymerase I; Short=POL I gi|42461|emb|CAA23607.1| unnamed protein product [Escherichia coli] gi|147312|gb|AAA24402.1| DNA polymerase I [Escherichia coli] gi|304969|gb|AAB02998.1| DNA polymerase I [Escherichia coli str. K-12 substr. MG1655] gi|1790294|gb|AAC76861.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Escherichia coli str. K-12 substr. MG1655] gi|73857846|gb|AAZ90553.1| DNA polymerase I [Shigella sonnei Ss046] gi|85676195|dbj|BAE77445.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and 3'->5' exonuclease [Escherichia coli str. K12 substr. W3110] gi|157080273|gb|ABV19981.1| DNA polymerase I [Escherichia coli E24377A] gi|169757050|gb|ACA79749.1| DNA polymerase I [Escherichia coli ATCC 8739] gi|169891171|gb|ACB04878.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B] gi|187430737|gb|ACD10011.1| DNA polymerase I [Shigella boydii CDC 3083-94] gi|188488957|gb|EDU64060.1| DNA polymerase I [Escherichia coli 53638] gi|190900509|gb|EDV60321.1| DNA polymerase I [Escherichia coli B7A] gi|192929358|gb|EDV82966.1| DNA polymerase I [Escherichia coli E22] gi|192958716|gb|EDV89154.1| DNA polymerase I [Escherichia coli E110019] gi|194411506|gb|EDX27846.1| DNA polymerase I [Escherichia coli B171] gi|194420903|gb|EDX36943.1| DNA polymerase I [Escherichia coli 101-1] gi|209914595|dbj|BAG79669.1| DNA polymerase I [Escherichia coli SE11] gi|218354309|emb|CAV01020.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli 55989] gi|218363191|emb|CAR00833.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli IAI1] gi|238860827|gb|ACR62825.1| DNA polymerase I [Escherichia coli BW2952] gi|242379401|emb|CAQ34215.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Escherichia coli BL21(DE3)] gi|253326546|gb|ACT31148.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975716|gb|ACT41387.1| DNA polymerase I [Escherichia coli B str. REL606] gi|253979872|gb|ACT45542.1| DNA polymerase I [Escherichia coli BL21(DE3)] gi|260451301|gb|ACX41723.1| DNA polymerase I [Escherichia coli DH1] gi|291321385|gb|EFE60824.1| DNA polymerase I [Escherichia coli B088] gi|299879003|gb|EFI87214.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1] gi|300315036|gb|EFJ64820.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1] gi|300413850|gb|EFJ97160.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1] gi|300452272|gb|EFK15892.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1] gi|300523745|gb|EFK44814.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7] gi|300528128|gb|EFK49190.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1] gi|301073504|gb|EFK88310.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1] gi|308118587|gb|EFO55849.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7] gi|315138432|dbj|BAJ45591.1| DNA polymerase I [Escherichia coli DH1] gi|320174864|gb|EFW49985.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112] gi|323161077|gb|EFZ46995.1| DNA polymerase I [Escherichia coli E128010] gi|323174273|gb|EFZ59900.1| DNA polymerase I [Escherichia coli LT-68] gi|323189713|gb|EFZ74992.1| DNA polymerase I [Escherichia coli RN587/1] gi|323939084|gb|EGB35300.1| DNA polymerase I [Escherichia coli E482] gi|323959369|gb|EGB55030.1| DNA polymerase I [Escherichia coli H489] gi|323969730|gb|EGB65013.1| DNA polymerase I [Escherichia coli TA007] gi|324019768|gb|EGB88987.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3] gi|331036054|gb|EGI08290.1| DNA polymerase I (POL I) [Escherichia coli H736] gi|331046645|gb|EGI18730.1| DNA polymerase I (POL I) [Escherichia coli M718] gi|331061960|gb|EGI33883.1| DNA polymerase I (POL I) [Escherichia coli TA271] gi|331067381|gb|EGI38786.1| DNA polymerase I (POL I) [Escherichia coli TA280] gi|331072296|gb|EGI43629.1| DNA polymerase I (POL I) [Escherichia coli H591] gi|332105090|gb|EGJ08436.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Shigella sp. D9] Length = 928 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|323974266|gb|EGB69395.1| DNA polymerase I [Escherichia coli TW10509] Length = 928 Score = 435 bits (1119), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|332998506|gb|EGK18104.1| DNA polymerase I [Shigella flexneri K-272] Length = 928 Score = 435 bits (1119), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------TAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|332751661|gb|EGJ82060.1| DNA polymerase I [Shigella flexneri 4343-70] gi|332998620|gb|EGK18217.1| DNA polymerase I [Shigella flexneri K-218] Length = 928 Score = 435 bits (1119), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------LGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|77456284|ref|YP_345789.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1] gi|77380287|gb|ABA71800.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1] Length = 935 Score = 435 bits (1119), Expect = e-119, Method: Composition-based stats. Identities = 104/712 (14%), Positives = 200/712 (28%), Gaps = 168/712 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 D ET A+ ++ +F + H Sbjct: 348 KLFAFDTETT----------GIDAQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRD 397 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWICTLVLARSNG 104 + + LK LE+ + V ++ F+ +L C + + T++ + Sbjct: 398 TVLRALKPILEDPNKLKVGQHAKFDMNILANCAIGGDQNEGITVRGIA-FDTMLESYVLN 456 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 + + + + K L + + + A G Y D Sbjct: 457 STAT--------RHDMDSLAQ-KYLDHTTVSFQDIAGKGAKQLTFDQIALEQAGPYAAED 507 Query: 165 VTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 VT + + L E L + I +G VD L + + Sbjct: 508 ADVTLRLHQTLFDKLSAIPSLASVLTDIEIPLVPVLARIERQGAFVDAELLGIQSIELGN 567 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKL 269 + L++E + + ++L L+ + GL + T +T + VL+ + Sbjct: 568 KMIALEREAFEIAG-EEFNLGSPKQLGVILYEKLGLPVLKKTAKGQPSTAEEVLAKLAED 626 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQN 328 + +V S+ + L E +N GR+ + A TGR S QN Sbjct: 627 DHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-STGRLSSSDPNLQN 685 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +P + +R +A +G KL+ AD + IE R+ Sbjct: 686 IPVRTAEGRR-------------------------IRQAFVAPKGYKLLAADYSQIELRI 720 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++ ++ + AF D++ T A F V +VT DQR K + Sbjct: 721 MAHLSRDEGLMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINF----------- 769 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 G+ + + + Sbjct: 770 ---GLIYGMG------------------------------AQKLGKDIGVDTKTAKAYID 796 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + ++ V E + + + GR L Sbjct: 797 TYFARYPGVREYMDRTRAQA--------------------------ADQGFVETIFGRRL 830 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGY 622 D+ +N+ R +Q + DI+ + M+ Sbjct: 831 YLPDINSNKP---QERAAAERTAINAP------MQGTAADIIKKAMVAVDNWLCASGLDA 881 Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + + M+ +PL E + Sbjct: 882 KVILQVHDELVLEVREDLVDQVREEIRVHMSEAAK--LDVPLLVEVGVGNNW 931 >gi|293413298|ref|ZP_06655959.1| DNA polymerase I [Escherichia coli B354] gi|291468046|gb|EFF10544.1| DNA polymerase I [Escherichia coli B354] Length = 928 Score = 435 bits (1119), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|238892277|ref|YP_002917011.1| DNA polymerase I [Klebsiella pneumoniae NTUH-K2044] gi|238544593|dbj|BAH60944.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 930 Score = 435 bits (1119), Expect = e-119, Method: Composition-based stats. Identities = 106/701 (15%), Positives = 210/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD + Sbjct: 355 AFDTETDSLDNIS----------ANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVL 404 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 +LK LE+ V V N ++R +L ++++ T++ + L +V Sbjct: 405 TLLKPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIA-FDTMLESYI------LDSVAG 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 457 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 513 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H +Q + +L+Q Sbjct: 514 MWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 573 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 574 EIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 633 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 690 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 691 ------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 726 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + V+ +QR K + G++ Sbjct: 727 TAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINF--------------GLIYGMS- 771 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + ++ + +++ V E Sbjct: 772 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 802 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ Sbjct: 803 YMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSSNGA 836 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 + +Q + DI+ M+ K +++ VHDE+V Sbjct: 837 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELV 887 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + ++ LM ++ + A +PL E + + Sbjct: 888 FEVHKDELDAVSKKIHELMENSTTLA--VPLLVEVGSGENW 926 >gi|91213409|ref|YP_543395.1| DNA polymerase I [Escherichia coli UTI89] gi|117626137|ref|YP_859460.1| DNA polymerase I [Escherichia coli APEC O1] gi|218560939|ref|YP_002393852.1| DNA polymerase I [Escherichia coli S88] gi|237702893|ref|ZP_04533374.1| DNA polymerase I [Escherichia sp. 3_2_53FAA] gi|91074983|gb|ABE09864.1| DNA polymerase I [Escherichia coli UTI89] gi|115515261|gb|ABJ03336.1| DNA polymerase I [Escherichia coli APEC O1] gi|218367708|emb|CAR05497.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli S88] gi|226902830|gb|EEH89089.1| DNA polymerase I [Escherichia sp. 3_2_53FAA] gi|294492133|gb|ADE90889.1| DNA polymerase I [Escherichia coli IHE3034] gi|307628940|gb|ADN73244.1| DNA polymerase I [Escherichia coli UM146] gi|315289553|gb|EFU48946.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3] gi|323949358|gb|EGB45247.1| DNA polymerase I [Escherichia coli H252] Length = 928 Score = 435 bits (1119), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGRGENW 924 >gi|194433216|ref|ZP_03065497.1| DNA polymerase I [Shigella dysenteriae 1012] gi|194418500|gb|EDX34588.1| DNA polymerase I [Shigella dysenteriae 1012] Length = 928 Score = 435 bits (1119), Expect = e-119, Method: Composition-based stats. Identities = 103/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + KL++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAKLEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|329999655|ref|ZP_08303472.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3] gi|328538267|gb|EGF64411.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3] Length = 930 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 106/701 (15%), Positives = 210/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD + Sbjct: 355 AFDTETDSLDNIS----------ANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVL 404 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 +LK LE+ V V N ++R +L ++++ T++ + L +V Sbjct: 405 TLLKPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIA-FDTMLESYI------LDSVAG 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 457 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 513 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H +Q + +L+Q Sbjct: 514 MWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 573 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 574 EIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 633 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 690 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 691 ------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 726 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + V+ +QR K + G++ Sbjct: 727 TAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINF--------------GLIYGMS- 771 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + ++ + +++ V E Sbjct: 772 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 802 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ Sbjct: 803 YMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSSNGA 836 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 + +Q + DI+ M+ K +++ VHDE+V Sbjct: 837 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELV 887 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + ++ LM ++ + A +PL E + + Sbjct: 888 FEVHKDELDAVSKKIHELMENSTTLA--VPLLVEVGSGENW 926 >gi|218692150|ref|YP_002400362.1| DNA polymerase I [Escherichia coli ED1a] gi|218429714|emb|CAV18034.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli ED1a] Length = 928 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGRGENW 924 >gi|222035576|emb|CAP78321.1| DNA polymerase I [Escherichia coli LF82] gi|312948433|gb|ADR29260.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C] Length = 928 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGRGENW 924 >gi|323964211|gb|EGB59694.1| DNA polymerase I [Escherichia coli M863] Length = 928 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDLEAVAKKIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|307943370|ref|ZP_07658714.1| DNA polymerase I [Roseibium sp. TrichSKD4] gi|307773000|gb|EFO32217.1| DNA polymerase I [Roseibium sp. TrichSKD4] Length = 793 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 109/716 (15%), Positives = 197/716 (27%), Gaps = 175/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49 + D ET S A ++ + H Sbjct: 204 YVAFDTETTSLN----------AMQAELVGISLSTSTGKACYIPLAHIDGEGDLLGGGAL 253 Query: 50 ------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 +LK LE+ V +A N ++ V+ + + + T++L+ + Sbjct: 254 IEGQIPLKDALAILKPMLEDPAVLKIAQNLKYDWLVMTHY---GVNVTSYDDTMLLSYTV 310 Query: 104 GLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + E G + I + + Y Sbjct: 311 DAGKGGNGMDELSERW--------LGHKPIPF----KEVCGSGKSMITFDKVPLDKATAY 358 Query: 161 CKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 D VT +++ L+P + E+ + + + RG VD + L+ Sbjct: 359 AAEDADVTLRLWQVLKPRLASDRMATVYETLERPMVPVLARMEQRGIAVDRQMLSRLSGD 418 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266 L+ E+ L + ++L LF + GL T+ +T VL Sbjct: 419 FAQGMAGLEAEIHELAG-ESFNIGSPKQLGDILFGKMGLPGGKKTKTGAWSTSASVLEDL 477 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + S+ + L ++ D + T L A+ TGR S Sbjct: 478 AAEGHTLPSKIVEWRQLSKLKSTYSDALPGYIHPDTKRVHTSYALAATTTGRLSSSEPNL 537 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P + + + +R +A +G KL+ AD + IE Sbjct: 538 QNIPVRTAAGRK-------------------------IRQAFVAEKGMKLISADYSQIEL 572 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA MA KAFE G D++ T + F + R K + Sbjct: 573 RVLAHMADIPQLKKAFEEGLDIHAMTASEMFGTPIEGMDPMVRRQAKAINFG-------- 624 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ A Sbjct: 625 ------IIYGISAFGLAAQ------------------------------LGISRGEASDY 648 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 K + ++ + E + T + GR Sbjct: 649 IKTYFERFPGIKEYMEATKKQVHAT--------------------------GYVTTIFGR 682 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KA 620 Y DV + R +Q + DIL M+ K Sbjct: 683 KAHYPDVNTKNPNMRNF---YERAAINAP------IQGSAADILRRAMVRMEDRLLSSKL 733 Query: 621 GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ ++ +M + P +PL+ + + + Sbjct: 734 DAQMLLQVHDELIFEVPEVQVDATIPLIKDVMENACDPVLKLSVPLQVDARAADNW 789 >gi|152972672|ref|YP_001337818.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957521|gb|ABR79551.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 930 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 106/701 (15%), Positives = 210/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD + Sbjct: 355 AFDTETDSLDNIS----------ANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVL 404 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 +LK LE+ V V N ++R +L ++++ T++ + L +V Sbjct: 405 ALLKPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIA-FDTMLESYI------LDSVAG 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 457 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 513 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H +Q + +L+Q Sbjct: 514 MWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 573 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 574 EIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 633 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 690 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 691 ------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 726 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + V+ +QR K + G++ Sbjct: 727 TAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINF--------------GLIYGMS- 771 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + ++ + +++ V E Sbjct: 772 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 802 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ Sbjct: 803 YMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSSNGA 836 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 + +Q + DI+ M+ K +++ VHDE+V Sbjct: 837 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELV 887 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + ++ LM ++ + A +PL E + + Sbjct: 888 FEVHKDELNAVSKKIHELMENSTTLA--VPLLVEVGSGENW 926 >gi|15804448|ref|NP_290488.1| DNA polymerase I [Escherichia coli O157:H7 EDL933] gi|15834040|ref|NP_312813.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai] gi|168755528|ref|ZP_02780535.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401] gi|168768145|ref|ZP_02793152.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486] gi|168780763|ref|ZP_02805770.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076] gi|208808881|ref|ZP_03251218.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206] gi|208812650|ref|ZP_03253979.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045] gi|208818813|ref|ZP_03259133.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042] gi|209400301|ref|YP_002273378.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115] gi|217325868|ref|ZP_03441952.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588] gi|254039074|ref|ZP_04873124.1| DNA polymerase I [Escherichia sp. 1_1_43] gi|254795854|ref|YP_003080691.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359] gi|261223490|ref|ZP_05937771.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK2000] gi|261257253|ref|ZP_05949786.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK966] gi|12518742|gb|AAG59052.1|AE005617_1 DNA polymerase I [Escherichia coli O157:H7 str. EDL933] gi|13364262|dbj|BAB38209.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai] gi|189001592|gb|EDU70578.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076] gi|189357227|gb|EDU75646.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401] gi|189362585|gb|EDU81004.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486] gi|208728682|gb|EDZ78283.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206] gi|208733927|gb|EDZ82614.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045] gi|208738936|gb|EDZ86618.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042] gi|209161701|gb|ACI39134.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115] gi|209752838|gb|ACI74726.1| essential GTPase for cell cycle [Escherichia coli] gi|209752840|gb|ACI74727.1| essential GTPase for cell cycle [Escherichia coli] gi|209752842|gb|ACI74728.1| essential GTPase for cell cycle [Escherichia coli] gi|209752844|gb|ACI74729.1| essential GTPase for cell cycle [Escherichia coli] gi|209752846|gb|ACI74730.1| essential GTPase for cell cycle [Escherichia coli] gi|217322089|gb|EEC30513.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588] gi|226838510|gb|EEH70539.1| DNA polymerase I [Escherichia sp. 1_1_43] gi|254595254|gb|ACT74615.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359] gi|309704289|emb|CBJ03638.1| DNA polymerase I [Escherichia coli ETEC H10407] gi|320191047|gb|EFW65697.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212] gi|320644589|gb|EFX13643.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89] gi|320655220|gb|EFX23166.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660846|gb|EFX28292.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905] gi|320666006|gb|EFX33025.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61] gi|323934350|gb|EGB30763.1| DNA polymerase I [Escherichia coli E1520] gi|326338135|gb|EGD61965.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044] gi|326342571|gb|EGD66344.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125] gi|332345852|gb|AEE59186.1| DNA polymerase I PolA [Escherichia coli UMNK88] Length = 928 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHRDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|324111949|gb|EGC05929.1| DNA polymerase I [Escherichia fergusonii B253] Length = 928 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDLEAVAKKIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8] gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8] Length = 908 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 108/706 (15%), Positives = 210/706 (29%), Gaps = 170/706 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +Y D ++ +F + HD + Sbjct: 332 AFDTETTSL---------RYM-DAEIVGVSFAVEPGKAAYVPLGHDYMGAPEQLDRDSVL 381 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL---PSALK 110 + LK LE+ V N +++ VL DI + T+V + + Sbjct: 382 EQLKPLLEDPKHKKVGQNLKYDKNVLANH---DIQLEGIAEDTMVESYVLNSVGTRHDMD 438 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 ++ L E+ + ++ G Y D +T Sbjct: 439 SLARTY------------LDEETITYESIAGKGAKQLTFNQIDLESAGPYAAEDADITLR 486 Query: 171 IFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L P + L + + RG + + +Q + +L+ Sbjct: 487 LHQTLAPRLKDTGKLESVYREIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERMAELE 546 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 +E + + ++L+ L+ + GL + T +T + VL Sbjct: 547 KEAHEVAG-EAFNLGSTKQLQAILYDKLGLRVIKKTPKGAPSTAEPVLQELAHEHELPRL 605 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +R S+ +TL E ++ T + TGR S QN+P ++ Sbjct: 606 IVEHR-SLSKLKSTYTDTLPELIHHRTGRVHTSYHQAVTATGRLSSSEPNLQNIPIRTQE 664 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA +G KL+ AD + IE R++A ++G+ Sbjct: 665 GRR-------------------------IRQAFIAPKGYKLLAADYSQIELRIMAHLSGD 699 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AFE GED++ T A F V +VT DQR K + L Sbjct: 700 RGLLTAFEHGEDIHKATAAEVFGVTVDEVTGDQRRSAKAINFGLI--------------Y 745 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + ++ + + + +++ Sbjct: 746 GMSAFGLSRQLEVD------------------------------RKTAQEYIDRYFERYP 775 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + + + + + + GR L ++ Sbjct: 776 GVLKYMDNIRKQAHD--------------------------DGYVETLYGRRLYLPEINA 809 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTV 628 + R +Q + DI+ M+ + + + V Sbjct: 810 RN---KQLQQAAERTAINAP------MQGTAADIIKRAMIEVDNWLRSEHASDACMTMQV 860 Query: 629 HDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE++ E + L M++ S +PL E + Sbjct: 861 HDELIIEVREEAVDKVKDGLVKRMSAAAS--LDVPLLVEAGVGDNW 904 >gi|265994070|ref|ZP_06106627.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] gi|262765051|gb|EEZ10972.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] Length = 688 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 100 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 149 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 150 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 206 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 207 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 254 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 255 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 314 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 315 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 373 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 374 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 433 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 434 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 468 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 469 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 518 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 519 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 544 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 545 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 578 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 579 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 629 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 630 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 684 >gi|307314016|ref|ZP_07593630.1| DNA polymerase I [Escherichia coli W] gi|306906333|gb|EFN36849.1| DNA polymerase I [Escherichia coli W] gi|315063149|gb|ADT77476.1| DNA polymerase I [Escherichia coli W] gi|323380787|gb|ADX53055.1| DNA polymerase I [Escherichia coli KO11] Length = 928 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 101/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQITLEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|254718343|ref|ZP_05180154.1| DNA polymerase I [Brucella sp. 83/13] gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653] gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653] Length = 978 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 102/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 390 VLAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 LK LE+ + +A N ++ V++ I + T++++ Sbjct: 440 ENQIPLDAALAALKHVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 497 AGTGSHGMNPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + T + ++ TGR S Q Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ H+M + P+ + +PL+ + + + Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRHVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|110835520|ref|YP_694379.1| DNA polymerase I [Alcanivorax borkumensis SK2] gi|110648631|emb|CAL18107.1| DNA polymerase I [Alcanivorax borkumensis SK2] Length = 956 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 99/703 (14%), Positives = 198/703 (28%), Gaps = 161/703 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPV 52 D ET S + + ++ FA D H + Sbjct: 379 EFAFDTETTSLNYM----------NAELVGFAVAVSD-KAAYIPFGHNYPGAPDQIDKQL 427 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 + K LE+ + + N ++ +VL + + T++ + L +V Sbjct: 428 VIDKFKPLLEDDSLKKIGQNLKYDMSVLAEDAGITLRGVA-FDTMLESYV------LDSV 480 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + S + K L + + ++ Y D VT + Sbjct: 481 ATRHDMDSLAL---KYLGRKTISFTDIAGKGAKQLTFNQIGLHEASPYAAEDADVTLRLH 537 Query: 173 KRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P E L + I G VD L +Q + +L ++ Sbjct: 538 QTLWPKLEAEDRLPEVFRDIELPLVTVLSRIERNGTYVDATLLKHQSQFLAKRMAELQEK 597 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + + ++L L+ + + + T +T + VL P + Sbjct: 598 AFDIAGQ-EFNLASPKQLGEILYEKLEIPVIKKTPKGAPSTAEAVLQELAHDYPLPQVIM 656 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + R ++ + L E +N T + TGR S QN+P S Sbjct: 657 DYR-GVAKLKNTYTDKLPELINQRTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRSEEGR 715 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + +R +A +GKK+V D + IE R++A ++G++ Sbjct: 716 K-------------------------IRQAFLAPKGKKIVACDYSQIELRIMAHLSGDKG 750 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 AFE G D++ T A + +V+ + R K + G+ Sbjct: 751 LTDAFEQGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINF--------------GLIYGM 796 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A + + + +++ V Sbjct: 797 S------------------------------AFGLAKQLGLPRKEAQEYIDLYFERYPGV 826 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + + GR L ++ + Sbjct: 827 KKYMEDTRALAID--------------------------KGYVETVYGRRLYLPEIHSKN 860 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631 + R +Q + DI+ + M+ +++ VHDE Sbjct: 861 ---GQRRQGAERAAINAP------MQGTAADIIKKAMIKVHDWLETTHFDAKMIMQVHDE 911 Query: 632 IVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E D + + M S +PL + + + Sbjct: 912 LVFEVADDQVDDLVKEVKARMESAAE--LKVPLIVDAGAGENW 952 >gi|293417324|ref|ZP_06659948.1| DNA polymerase I [Escherichia coli B185] gi|291430844|gb|EFF03840.1| DNA polymerase I [Escherichia coli B185] Length = 928 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIESGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALDEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|320649913|gb|EFX18421.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687] Length = 928 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHRDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|325499168|gb|EGC97027.1| DNA polymerase I [Escherichia fergusonii ECD227] Length = 928 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDLEAVAKKIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|260857738|ref|YP_003231629.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368] gi|257756387|dbj|BAI27889.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368] gi|323155157|gb|EFZ41344.1| DNA polymerase I [Escherichia coli EPECa14] Length = 928 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 206/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F++ VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFSLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|291285274|ref|YP_003502092.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615] gi|290765147|gb|ADD59108.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615] Length = 928 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QSYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHRDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS] gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS] Length = 914 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 103/703 (14%), Positives = 191/703 (27%), Gaps = 166/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S L ++ +F HD + Sbjct: 340 AFDTETTSLDYL----------QAQIVGVSFAVQVGEAAYVPLAHDYLGAPQQLSCDNVL 389 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112 VLK LEN + N ++ VL + + T++ + + ++ Sbjct: 390 AVLKPLLENPKKRKIGQNLKYDAHVLANH-GIHLQGMA-FDTMLESYVLNSTTKHDMDSL 447 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + L E + ++ Y D +T ++ Sbjct: 448 AQIY------------LQKTTITFEDVAGKGKKQLSFNQIPLEHATPYACEDADITLQLH 495 Query: 173 KRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L L + + G +D L H + + +L+Q Sbjct: 496 QNLWEQLQNRPKLERIFDDLEMPLIPVLIRMERHGVKIDATLLHQQSAELATRLQQLEQA 555 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVF 277 + ++L+T LF + L +T VL P + Sbjct: 556 AYEEAGT-EFNLNSPKQLQTILFDKLSLPVLKKTPKKDPSTAVEVLEELAIDYPLPQLIL 614 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R S+ +TL + +N T + TGR S QN+P S Sbjct: 615 IYR-SLSKLKSTYTDTLPQQINPKTGRVHTSYHQAVTTTGRLSSTNPNLQNIPIRSAEGR 673 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R IA +G L+ AD + IE R++A ++ ++ Sbjct: 674 R-------------------------IRQAFIAPKGYCLLAADYSQIELRIMAHLSEDEK 708 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L A GED++ A F++A +VT +QR K + G+ Sbjct: 709 LLSALTAGEDIHKAVAAEVFDLAMDEVTTEQRRQAKAVN--------------FGLMYGM 754 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 A + + A+ ++ V Sbjct: 755 ------------------------------QAFGLAKQLGIERHQAQIYMDAYFARYPGV 784 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +++ +Q + GR L ++ Sbjct: 785 KAYMDDMRVLAKQ--------------------------QGYVETVFGRRLYIPEIKTRH 818 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDE 631 R +Q + D++ M+ +++ VHDE Sbjct: 819 IGRRQA---AERTAINAP------MQGTAADLIKRAMLTVDDWIEKSGLDVKMLMQVHDE 869 Query: 632 IVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E +T A + + MT +PL + K + Sbjct: 870 LVFEIAETVIEEAKVAIIEAMTQVAE--LKVPLIVDIGIGKNW 910 >gi|156936143|ref|YP_001440059.1| DNA polymerase I [Cronobacter sakazakii ATCC BAA-894] gi|156534397|gb|ABU79223.1| hypothetical protein ESA_04040 [Cronobacter sakazakii ATCC BAA-894] Length = 927 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 104/706 (14%), Positives = 212/706 (30%), Gaps = 167/706 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52 + +D ET S +LT ++ +F + HD Sbjct: 350 VVAVDTETDSLDNLT----------ANLVGISFATEPGLAAYIPVAHDYLDAPDQLSRDR 399 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSAL 109 + ++LK LE+ + V N F+R +L+ +++ T++ + + Sbjct: 400 VLELLKPLLEDESLVKVGQNLKFDRGILQNY-GIELRGIA-FDTMLESYILDSVSGRHDM 457 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 ++ L E ++ G Y D VT Sbjct: 458 DSLSSR------------WLKHTTITFEQIAGKGKNQLTFNQIDLEQAGRYAAEDADVTL 505 Query: 170 EIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ ++ P + L + I G +D A+ H +Q + ++ T+L Sbjct: 506 QLHLKMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDPAVLHAHSQEIALKLTEL 565 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274 +Q+ + + ++L+T LF + G+ T +T + VL P Sbjct: 566 EQKAHEIAG-EPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPK 624 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + R ++ + L + +N T + TGR S QN+P + Sbjct: 625 VILQYR-GLAKLKSTYTDKLPQMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRND 683 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA E +V AD + IE R++A ++ Sbjct: 684 EGRR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSR 718 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + V+ +QR K + Sbjct: 719 DKGLLSAFAEGKDIHRATAAEVFGLPLESVSNEQRRSAKAINF--------------GLI 764 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + + ++ + +++ Sbjct: 765 YGMS------------------------------AFGLSRQLNIPRKESQKYMDLYFERY 794 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V E + ++ + GR L D+ Sbjct: 795 PGVLEYMERTRKQAKE--------------------------QGYVETLDGRRLYLPDIN 828 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628 + + + +Q + DI+ M+ + +++ V Sbjct: 829 ASNAARRAGAER---------AAINAPMQGTAADIIKRAMIAVDGWLQKEQPRVKMIMQV 879 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E D ++ LM ++ +PL E + Sbjct: 880 HDELVFEVHKDDVEAVSQKIHELMENSMQ--LDVPLLVEVGSGVNW 923 >gi|320639201|gb|EFX08828.1| DNA polymerase I [Escherichia coli O157:H7 str. G5101] Length = 916 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 341 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 391 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 448 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 449 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 496 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 497 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 556 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 557 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 615 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 616 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 674 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 675 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 709 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 710 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 755 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 756 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 785 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 786 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 819 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 820 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 870 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 871 ELVFEVHRDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 912 >gi|254694920|ref|ZP_05156748.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] Length = 978 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 206/715 (28%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + +A N ++ V++ I + T++++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + Y Sbjct: 497 AGTGSHGMAPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ +L + ++L LF + GL T+ +T +VL Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 ++ + + ++ + L +N + T + ++ TGR S Q Sbjct: 664 AEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KL+ AD + IE R Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + + Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + + GR Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 Y D+ + R +Q + DI+ M+ A Sbjct: 869 THYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919 Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M + P+ + +PL+ + + + Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|82546208|ref|YP_410155.1| DNA polymerase I [Shigella boydii Sb227] gi|81247619|gb|ABB68327.1| DNA polymerase I [Shigella boydii Sb227] Length = 928 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNPLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 923 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 97/708 (13%), Positives = 197/708 (27%), Gaps = 168/708 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 D ET +T V+ +F ++ HD Sbjct: 344 KAFAFDTETDGLDYMT----------ANVVGVSFAIEEGKAAYVPVAHDYLDAPAQLDRD 393 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + LK LE+ + + N F+ +++ +++ T++ + Sbjct: 394 WVLAQLKPLLEDPNQAKIGQNLKFDASIVARY-GIEMQGI-VFDTMLESYVFNSVVGRHD 451 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + ++ L + E + ++ G Y D +T Sbjct: 452 MDSLALRY------------LEHKNISFEEIAGKGKKQLTFNQIDLAQAGPYAAEDADIT 499 Query: 169 REIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + L P E L + + G VD L + + + Sbjct: 500 LRLHNALYPKVEADEKLKHVFETIEMPLVPVLSRMERTGVYVDSMLLGAQSTEIAARLDE 559 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQA 273 L+++ + + ++L+ LF + GL T +T + VL P Sbjct: 560 LEKKAFEIADQ-EFNLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDYPLP 618 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + R ++ + L + +N T + TGR S QN+P + Sbjct: 619 KLILEYR-GLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRN 677 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A G K++ D + IE R++A ++ Sbjct: 678 EEGRR-------------------------IRQAFVAQSGYKILAVDYSQIELRIMAHLS 712 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ L AF G+D++ T A + QV+ +QR K + Sbjct: 713 GDKALLDAFRHGKDIHAATAAEILGLDIEQVSSEQRRRAKAINF--------------GL 758 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ A + + + ++ Sbjct: 759 IYGMSAFGLAKQLDM------------------------------GRNEAQDYMNVYFER 788 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V E + GR L D+ Sbjct: 789 YPGVLEYMESTRNTA--------------------------SEKGYVETLFGRRLYLPDI 822 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVL 626 + + R +Q + DI+ M+ +++ Sbjct: 823 KSRNGLRR---KAAERAAINAP------MQGTAADIIKLAMIAVDNWVQQQPQDEVRLLM 873 Query: 627 TVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E ++ + + + LM + +PL A+ + Sbjct: 874 QVHDELVFEVKESALESVTAEVKALMEQAAT--LDVPLIADAGFGDNW 919 >gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565] gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565] Length = 921 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 112/706 (15%), Positives = 211/706 (29%), Gaps = 170/706 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54 D ET S Y E ++ +F + HD V+ Sbjct: 345 AFDTETTSLD---------YME-ARIVGVSFAVEAGKAAYVPFGHDYLGAPVQLSEAVVL 394 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111 LK LE+ V N ++R VL ++D+ + T++ + ++ + + Sbjct: 395 GKLKPLLEDPTCLKVGQNLKYDRNVLLNH-DIDLQGIAY-DTMLESYVLNSTASRHDMDS 452 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + L E + ++ Y D +T + Sbjct: 453 LAKRY------------LGVETTSFEDIAGKGVKQLTFNQIELEQAAPYAAEDADITLRL 500 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E L + + G +D L H +Q +++ +L++ Sbjct: 501 HQTLWGQLEAVPGLAKVFSEIELPLLPVLARMELLGTTIDPKLLHQQSQEIELRLAELEK 560 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L LF + GL + T +T + VL+ + + Sbjct: 561 QAHELAGQ-EFNLSSPKQLGEILFTKLGLPIIKKTPKGAPSTAEEVLAELAETYELPQ-L 618 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 ++ + L + GR+ + A+ TGR S QN+P + Sbjct: 619 LMEHRGLAKLKSTYTDKLPLMIKPQTGRVHTSYHQAVAA-TGRLSSSDPNLQNIPVRNEQ 677 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R I S G KLV AD + IE R++A ++G+ Sbjct: 678 GRR-------------------------IRQAFIPSAGYKLVAADYSQIELRIMAHLSGD 712 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF G+D++ T A F VA VT D R K + Sbjct: 713 KGLLTAFAEGKDIHKATAAEVFGVAIDAVTTDMRRSAKAINF--------------GLIY 758 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + ++ + +++ Sbjct: 759 GMS------------------------------AFGLAKQLGIGRAEAQKYMDLYFERYP 788 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V E Q E + GR L D+ + Sbjct: 789 GVLEYMERTRQQAE--------------------------AQGYVETLFGRRLYLPDIKS 822 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN-------ATKAGYDIVLTV 628 + L + R +Q + DI+ M+N +++ V Sbjct: 823 RNAGLR---KAAERAAINAP------MQGTAADIIKRAMINVDSWIRGIEDESIRMLMQV 873 Query: 629 HDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E + +++ M++ +PL E + Sbjct: 874 HDELVFEIREEKLEEYIAIIKEKMSAAAE--LDVPLVVEAGTGDNW 917 >gi|320185486|gb|EFW60254.1| DNA polymerase I [Shigella flexneri CDC 796-83] Length = 928 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNPLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|300931708|ref|ZP_07147013.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1] gi|300460499|gb|EFK23992.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1] Length = 928 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYATEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|320198938|gb|EFW73536.1| DNA polymerase I [Escherichia coli EC4100B] Length = 928 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDANVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|206576415|ref|YP_002241257.1| DNA polymerase I [Klebsiella pneumoniae 342] gi|288937896|ref|YP_003441955.1| DNA polymerase I [Klebsiella variicola At-22] gi|206565473|gb|ACI07249.1| DNA polymerase I [Klebsiella pneumoniae 342] gi|288892605|gb|ADC60923.1| DNA polymerase I [Klebsiella variicola At-22] Length = 930 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 104/701 (14%), Positives = 210/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD + Sbjct: 355 AFDTETDSLDNIS----------ANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVL 404 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 +LK LE+ + V N ++R +L ++++ T++ + L +V Sbjct: 405 ALLKPLLEDEKLLKVGQNLKYDRGILANY-DIELRGIA-FDTMLESYI------LDSVAG 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 457 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 513 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H +Q + +L+Q Sbjct: 514 MWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 573 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 574 EIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 633 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 690 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 691 ------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 726 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + V+ +QR K + G++ Sbjct: 727 TAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINF--------------GLIYGMS- 771 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + ++ + +++ V E Sbjct: 772 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 802 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ Sbjct: 803 YMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSSNGA 836 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + +Q + DI+ M+ + +++ VHDE+V Sbjct: 837 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELV 887 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + ++ LM ++ + A +PL E + + Sbjct: 888 FEVHKDELDAVSKKIHELMENSTTLA--VPLLVEVGSGENW 926 >gi|119475294|ref|ZP_01615647.1| DNA polymerase I [marine gamma proteobacterium HTCC2143] gi|119451497|gb|EAW32730.1| DNA polymerase I [marine gamma proteobacterium HTCC2143] Length = 920 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 107/707 (15%), Positives = 209/707 (29%), Gaps = 169/707 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52 D ET S Y E V+ +F + HD Sbjct: 343 YFAFDTETTSLN---------YME-ARVVGVSFAVEAGSAAYVPFGHDYVGVEQQLSEDW 392 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SAL 109 + LK LE++ V N ++R VL +++ + T++ + + Sbjct: 393 VLAQLKPLLEDSSRAKVGQNLKYDRNVLANH-GIELNGIQ-FDTMLESYVLNSTATRHDM 450 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 ++ K L K E + ++ + G Y D +T Sbjct: 451 DSLAR------------KYLDVGTIKFEDIAGKGAKQLTFNQIQLQQAGPYAAEDADITL 498 Query: 170 EIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L P + E L + I G V L + + + +L Sbjct: 499 QLHEVLWPKLAAIDSLMSVFQTIELSLVPVLSRIERNGALVSRDLLNKQSAELGTRLQQL 558 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274 ++E L + ++L LF + L + T +T + VL+ P Sbjct: 559 EKEAHELAG-EAFNLSSPKQLGHILFDKLELPVIKKTPKGAASTAEEVLAELALDYPLP- 616 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ S+ + L + ++ GR+ + + TGR S QN+P + Sbjct: 617 RILMEYRGLSKLKSTYTDKLPQMISEVTGRIHTSYHQAV-TATGRLSSSDPNLQNIPIRT 675 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + VR +A +G K+V AD + IE R++A ++ Sbjct: 676 EEGRK-------------------------VRQAFVARDGYKIVAADYSQIELRIMAHLS 710 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + LKAF G+D++ T A F + QV+ +QR K + Sbjct: 711 QDNGLLKAFAEGKDIHQATAAEVFGLELEQVSTEQRRRAKAINF--------------GL 756 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ A + + + + Sbjct: 757 IYGMSAFGLAKQID------------------------------VGRHEAQEYIDTYFSR 786 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + + + + GR L ++ Sbjct: 787 YPGVRDYMDNTRADAAE--------------------------RGYVETLYGRRLYLPEI 820 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627 + R +Q + DI+ + M++ + +++ Sbjct: 821 NASNGMRRQA---AERTAINAP------MQGTAADIIKKAMVDVDRWLLESDVDGQMIMQ 871 Query: 628 VHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E + S + LM+ +PL + + Sbjct: 872 VHDELVFEVAEPSLDYLVSSVNDLMSGAV--VLDVPLIVDVGIGSNW 916 >gi|320196914|gb|EFW71536.1| DNA polymerase I [Escherichia coli WV_060327] Length = 884 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 309 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 358 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 359 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 416 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 417 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 464 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 465 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 524 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 525 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 583 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 584 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 642 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 643 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 677 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 678 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 723 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 724 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 753 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 754 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 787 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 788 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 838 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 839 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 880 >gi|227824019|ref|YP_002827992.1| DNA polymerase I [Sinorhizobium fredii NGR234] gi|227343021|gb|ACP27239.1| DNA polymerase I [Sinorhizobium fredii NGR234] Length = 1040 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 106/721 (14%), Positives = 208/721 (28%), Gaps = 183/721 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---------VELWDCVHDP----- 51 D ET S + + + D+ +H Sbjct: 446 FDTETTSLDPMR----------ADLCGVSLAIADYSNDPMGGTIRAAYVPLIHKNGVGDL 495 Query: 52 -------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 LK LE+ V VA N ++ V+K I + + T++ Sbjct: 496 LGGGLVENQVPMREALSRLKNLLEDPSVLKVAQNLKYDYLVMKRH---GIAMQSFDDTML 552 Query: 99 LARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 ++ + ++ E G I + + Sbjct: 553 MSYVVDAGNGMHGMDSLSERW--------LGHTPIPY----KDIAGTGKASVSFDFVDID 600 Query: 156 LFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAH 205 Y D VT ++ L+P E+ L + + +RG VD + Sbjct: 601 KATTYAAEDADVTLRLWHVLKPRLAAKGLTRVYERLERPLIAVLAHMEERGITVDRQILS 660 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQR 261 L+ + L+ E+ L + ++L LF + GL T+ +T Sbjct: 661 RLSGELAQGAAALEDEIYRLAG-ETFTIGSPKQLGDILFGKMGLPGGSKTKTGQWSTSAS 719 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + + + + ++ + L ++ + + T L A+ TGR S Sbjct: 720 VLEDLAAVGHELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTGYALAATTTGRLSS 779 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 QN+P + +R+ IA+ G KLV AD Sbjct: 780 SEPNLQNIPVRTAEGRR-------------------------IRTAFIATPGHKLVSADY 814 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE RVLA +A +AF G D++ T + F V + + R K + + Sbjct: 815 SQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGII- 873 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 G++ A+ + + Sbjct: 874 -------------YGISAFGLANQLSIE------------------------------RS 890 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 K + ++ + + + + + Sbjct: 891 EAGDYIKRYFERFPGIRDYMENTKAFARE--------------------------HGYVE 924 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT--- 618 GR Y D+ ++ + R +Q + DI+ M+ Sbjct: 925 TIFGRRAHYPDIRSSNPSMR---AFNERASINAP------IQGSAADIIRRAMVKMEPAL 975 Query: 619 ---KAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKG--LPLKAEGYESKR 672 K ++L VHDE++ E + + ++ +M + A +PLK + ++ Sbjct: 976 DEAKLAARMLLQVHDELIFEVEEGEIERTLPVIVSVMENAAMPALDMRVPLKVDARAAQN 1035 Query: 673 Y 673 + Sbjct: 1036 W 1036 >gi|332764614|gb|EGJ94846.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Shigella flexneri 2930-71] Length = 884 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 309 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERAL 358 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 359 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 416 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 417 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 464 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 465 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 524 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 525 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 583 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 584 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 642 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 643 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 677 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 678 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 723 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 724 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 753 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 754 VLEYMERTRAQAKE--------------------------LGYVETLDGRRLYLPDIKSS 787 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 788 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 838 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 839 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 880 >gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424] gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Cupriavidus taiwanensis LMG 19424] Length = 939 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 102/709 (14%), Positives = 191/709 (26%), Gaps = 171/709 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 + ID ET S + ++ + H Sbjct: 359 VAIDTETTSLDPM----------QAQLVGISLSAAPGEACYIPVAHRGPDVAGLPEHGQL 408 Query: 51 --PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-- 106 + + ++ LE+ + N ++ V + + T++ + Sbjct: 409 SREFVLERMRAWLEDASRPKLGQNLKYDIHVFANH-GIKLRGVA-HDTMLQSYVLASHRN 466 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + ++ E L L + E + EY D Sbjct: 467 HGMDSLAERL------------LSLKTITYEEVCGKGASQIGFDQIDLARATEYAAEDAD 514 Query: 167 VTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 VT + +R+ P E + + Q + G +D + + Sbjct: 515 VTLRLHRRMFPQVEAAAGLRRVYEEIEMPVSVVLQKVERNGVLIDAERLAAQSAELGQRM 574 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTP 271 L+Q + +++ LF + L + T +T + VL + P Sbjct: 575 LALEQSAYEAAGQP-FNLGSPKQIGEILFNQMKLPVVKKTASGAPSTDEEVLQKLAEDYP 633 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + + R S+ + L + +N T + TGR + QN+P Sbjct: 634 LPKLLLDYR-GLSKLKSTYTDKLPKMVNPRTGRVHTSYGQATAVTGRLASTEPNLQNIPV 692 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + +R IA G +V AD + IE R++A Sbjct: 693 RTDEGRR-------------------------IREAFIAEPGSVIVSADYSQIELRIMAH 727 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++G++ L+AF GED++ T A F V V+ +QR KV+ Sbjct: 728 ISGDENLLRAFANGEDIHRATAAEIFGVERDAVSSEQRRYAKVIN--------------F 773 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ A A + Sbjct: 774 GLIYGMS------------------------------AFGLASNLGIERDAARHYIDRYF 803 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ V+ E Q + + GR L Sbjct: 804 MRYPGVAHYMEETRQTARE--------------------------QGYVETVFGRRLWLP 837 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIV 625 D+ R +Q + D++ M+ + Sbjct: 838 DINGGSGPRRQA---AERAAINAP------MQGTAADLIKLSMIAVQDWLERDGLQTRQI 888 Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + VHDE+V E P+ + L LM + +PL AE + Sbjct: 889 MQVHDELVLEVPEHELELVKARLPELMCTVAE--LRVPLVAEVGSGANW 935 >gi|70733594|ref|YP_257234.1| DNA polymerase I [Pseudomonas fluorescens Pf-5] gi|68347893|gb|AAY95499.1| DNA polymerase I [Pseudomonas fluorescens Pf-5] Length = 929 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 104/712 (14%), Positives = 197/712 (27%), Gaps = 168/712 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 + D ET A+ ++ +F H Sbjct: 342 KLIAFDTETT----------GIDAQQAQLVGLSFSVKAGEAAYVPLTHSYMGAPAQLDRD 391 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWICTLVLARSNG 104 + LK LE+ + V ++ F+ +L C + + T++ + Sbjct: 392 SVLLALKPLLEDPKLLKVGQHAKFDMNILANCAIGGDQANGITVRGVA-FDTMLESYVLN 450 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 + + + + K L + + + G Y D Sbjct: 451 STAT--------RHDMDSLAQ-KYLDHSTVSFQDIAGKGAKQLTFDQIPLEQAGPYAAED 501 Query: 165 VTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 VT + + L E L + I +G VD L + + Sbjct: 502 ADVTLRLHQVLFDKLSAIPSLASVLTDIEMPLVPVLARIERQGALVDDKLLGVQSIELGD 561 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKL 269 + L++E + + ++L + L+ + GL + T +T + VL+ + Sbjct: 562 KMVALEREAFEIAG-EEFNLGSPKQLGSILYDKLGLPVLKKTAKGQPSTAEEVLAKLAED 620 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQN 328 +V S+ + L E +N GR+ + A TGR S QN Sbjct: 621 DYPLPRVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-STGRLSSSDPNLQN 679 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +P + +R IA G KL+ AD + IE R+ Sbjct: 680 IPVRTAEGRR-------------------------IRQAFIAPPGYKLLAADYSQIELRI 714 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++ ++ L AF D++ T A F V VT DQR K + Sbjct: 715 MAHLSRDEGLLNAFRNNLDVHTATAAEVFKVELKDVTSDQRRSAKAIN------------ 762 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 G+ + + + Sbjct: 763 --FGLIYGMG------------------------------AQKLGKDIGVDTKQAKAYID 790 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + ++ V E + + + GR L Sbjct: 791 TYFARYPGVREYMDRTRAQA--------------------------ADQGYVETIFGRRL 824 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGY 622 ++ +N+ R +Q + DI+ + M+ Sbjct: 825 YLPEINSNKP---QERAGAERTAINAP------MQGTAADIIKKAMVAVDNWLASSGLDA 875 Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + + M+ + +PL E + Sbjct: 876 RVILQVHDELVLEVREDLVDQVREEIRGHMSGAAT--LDVPLLVEVGVGNNW 925 >gi|290513119|ref|ZP_06552482.1| DNA polymerase I [Klebsiella sp. 1_1_55] gi|289774501|gb|EFD82506.1| DNA polymerase I [Klebsiella sp. 1_1_55] Length = 930 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 104/701 (14%), Positives = 210/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD + Sbjct: 355 AFDTETDSLDNIS----------ANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVL 404 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 +LK LE+ + V N ++R +L ++++ T++ + L +V Sbjct: 405 ALLKPLLEDEKLLKVGQNLKYDRGILANY-DIELRGIA-FDTMLESYI------LDSVAG 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 457 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 513 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H +Q + +L+Q Sbjct: 514 MWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 573 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 574 EIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 633 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 690 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 691 ------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 726 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + V+ +QR K + G++ Sbjct: 727 TAFSEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINF--------------GLIYGMS- 771 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + ++ + +++ V E Sbjct: 772 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 802 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ Sbjct: 803 YMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSSNGA 836 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + +Q + DI+ M+ + +++ VHDE+V Sbjct: 837 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELV 887 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + ++ LM ++ + A +PL E + + Sbjct: 888 FEVHKDELDAVSKKIHELMENSTTLA--VPLLVEVGSGENW 926 >gi|237807112|ref|YP_002891552.1| DNA polymerase I [Tolumonas auensis DSM 9187] gi|237499373|gb|ACQ91966.1| DNA polymerase I [Tolumonas auensis DSM 9187] Length = 910 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 193/705 (27%), Gaps = 168/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + V+ +F HD Sbjct: 334 SFDTETNSLDYI----------QAQVVGLSFAVAPGDAAYLPLAHDYLGAPEQLDREQTL 383 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 LK LE+ V + F+R VL+ + + T++ + + Sbjct: 384 AKLKPLLEDPTRLKVGQHLKFDRNVLRNH-GIHLQGIA-FDTMLESYVLNSTASRHNMDD 441 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + K L E + ++ Y D +T + Sbjct: 442 LAK------------KYLNYTTQTFEDVAGKGVKQLTFNQVELEKAAFYAAEDADITLRL 489 Query: 172 FKRLEPL-----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E L + + G +D L +Q ++V +L+ Sbjct: 490 HQTLWPQVEKEPALKSLLLEMELPLAEVLSDMERTGALIDPFLLQNQSQQIEVRLAELES 549 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + G + ++L LF + L + T +T + VL P + Sbjct: 550 QAHEIAGGP-FNLGSPKQLGEVLFEKLQLPVIKKTPKGAPSTAEEVLQELAYDYPLPKLL 608 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R S+ + L + T + TGR S QN+P + Sbjct: 609 LEHR-SLSKLKSTYTDKLPLMIAPSTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRTEEG 667 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R +A G K+V AD + IE R++A ++ + Sbjct: 668 RR-------------------------IRQAFVADHGYKIVAADYSQIELRIMAHLSEDD 702 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF G+D++ T A N+ P VT +QR K + G Sbjct: 703 GLLQAFAHGQDIHRATAAEIMNITPEAVTSEQRRNAKAINF--------------GLIYG 748 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + +R + +++ Sbjct: 749 MS------------------------------AFGLAKQLGIPRGEAQRYMDRYFERYPG 778 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + EQ + GR L D+ Sbjct: 779 VLTYMERTREQAEQA--------------------------GYVETLFGRRLYLPDIKAK 812 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVH 629 L + R +Q + DI+ M+ +V+ VH Sbjct: 813 NMGLR---KAAERAAINAP------MQGTAADIIKRAMIKLADWIKTCDNGTIRMVMQVH 863 Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + ++ M S +PL + Sbjct: 864 DELVFEVREDKLDAYVPVIRQYMMDAAS--LKVPLDVGIGVGDNW 906 >gi|323943759|gb|EGB39856.1| DNA polymerase A [Escherichia coli H120] Length = 810 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 235 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 284 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 285 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 342 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 343 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDSDVTLQL 390 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 391 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 450 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 451 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 509 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 510 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 568 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 569 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 603 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 604 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 649 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 650 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 679 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 680 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 713 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 714 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 764 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 765 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 806 >gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2] gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2] Length = 940 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 111/705 (15%), Positives = 203/705 (28%), Gaps = 162/705 (22%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------D 50 M + D ET S DL ++ +F +D+ H Sbjct: 362 MDWVAFDTETDSL-DLFA---------GRIVGVSFSIEDNRAAYVPLAHNYPGAPAQLDR 411 Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110 + LK LE+ T V N+ F+ +L + + T++ + + Sbjct: 412 DTVLADLKPWLEDASRTKVMQNAKFDSHMLANH-GITLR-GVLFDTMLESYVLDSTAT-- 467 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + + K L E + G Y D VT + Sbjct: 468 ------RHDMDSLAA-KYLGRSTITFEDIAGKGAKALSFPEIHLEQAGPYAAEDADVTGQ 520 Query: 171 IFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L P + EQ L + + G VD + + ++ Sbjct: 521 LQQCLWPKLSVEPDLRSVYETIEQPLIEVLVAMERAGVRVDRGELAIQGKAIGERIAAVE 580 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 Q + ++LK LF E L + T +T + L P Sbjct: 581 QAAFKEAG-REFNLGSTKQLKELLFDELKLPVGKKTPKGEPSTDEEALGELVGSHPLPAL 639 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + R S+ ++ L E +++ GR+ + TGR S QN+P S Sbjct: 640 ILDYR-GLSKLKSTYIDRLPEDIHTHTGRVHSAFHQAV-TATGRLSSSNPNLQNIPIRSE 697 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R +A G KL+ AD + IE R++A ++ Sbjct: 698 EGRR-------------------------IRQAFVADPGCKLISADYSQIELRIMAHLSE 732 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ AF GED++ T A F V +V+ +QR K + Sbjct: 733 DERLCAAFAAGEDIHRATAAEVFGVKEVEVSDNQRRAAKAINF--------------GLI 778 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ A + + + ++ Sbjct: 779 YGMSAFGLAKQLD------------------------------VPRGEAQAYIDLYFARY 808 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V++ + Q Q + GR L ++ Sbjct: 809 PGVAKYMERMRQQARQ--------------------------MGYVETVFGRRLYLPEIH 842 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629 + R +Q + DI+ M+ K ++L VH Sbjct: 843 SRNGQRRQY---AERTAINAP------MQGTAADIIKIAMIALHKLLVVPGRARMILQVH 893 Query: 630 DEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 DE++ E P++D + MT +PL+ + + Sbjct: 894 DELIFEVPESDVAEIEPIIRAQMTGAAK--LNVPLEVGIGIGRSW 936 >gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1] gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1] Length = 919 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 99/702 (14%), Positives = 206/702 (29%), Gaps = 162/702 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------M 53 + D ET S + ++ + + HD + Sbjct: 344 VAFDTETTSLNYM----------QAELVGVSVAIEAGKAAYIPVAHDYEDAPEQLDRDWV 393 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + LK LE+ V + ++ VL ++ + + T++ + Sbjct: 394 LEQLKPWLEDEGKAKVGQHLKYDANVLNNY-DITLRGIK-FDTMLESYVFNSTGT----- 446 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + K L K E + K ++ Y D +T + + Sbjct: 447 ---RHDMDSLSS-KFLGHSTVKFEDIAGKGAKQKTFNQIDLEQAAFYAAEDADITLRLHQ 502 Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + P E L + + G +D H + + +++ + Sbjct: 503 AILPKLEKTPELVSVFSDIELPLVPVLAKMEQTGALIDPDRLHAQSAEIASRLQEVEIKA 562 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + ++L+ LF + GL + T +T + +L + + Sbjct: 563 HEEAGQ-EFNLSSPKQLQEILFEKQGLPVIKKTPKGQPSTAEPILQELAENYELPRLIME 621 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R ++ + L E + GR+ + + TGR S QN+P ++ Sbjct: 622 HR-SLAKLKSTYTDKLPEMIQHTGRIHTSYHQAV-TATGRLSSTDPNLQNIPIRTQEGRR 679 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A EG KLV AD + IE R++A ++ ++ Sbjct: 680 -------------------------IRQAFVAPEGHKLVAADYSQIELRIMAHLSQDKGL 714 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF ED++ T A F VA VT +QR K + G++ Sbjct: 715 LDAFAHDEDVHKATAAEVFEVAVDDVTAEQRRRAKAIN--------------FGLIYGMS 760 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + ++ + + +++ V Sbjct: 761 ------------------------------AFGLAKQLGISRPEAQKYVQRYFERYPGVR 790 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + ++ + GR L ++ + Sbjct: 791 TYMETTRENAKE--------------------------KGYVETIFGRRLYLPEIKARNA 824 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632 + R +Q + DI+ M+ G +++ VHDE+ Sbjct: 825 MMRQA---AERTAINAP------MQGSAADIIKRAMIKMHNWLADTDLGVKMIMQVHDEL 875 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + E + D A + + +M ++ +PL E + Sbjct: 876 IFEVAEKDLEAAQAKIIDIMQNSTE--IDVPLLVEAGVGDNW 915 >gi|320182134|gb|EFW57037.1| DNA polymerase I [Shigella boydii ATCC 9905] Length = 884 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 309 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 358 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 359 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 416 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 417 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 464 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 465 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 524 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 525 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 583 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 584 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 642 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 643 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 677 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 678 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 723 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 724 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 753 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 754 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 787 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 788 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 838 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 839 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 880 >gi|331685599|ref|ZP_08386182.1| DNA polymerase I (POL I) [Escherichia coli H299] gi|331077070|gb|EGI48285.1| DNA polymerase I (POL I) [Escherichia coli H299] Length = 928 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 101/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + + T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQSIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|71898927|ref|ZP_00681094.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71731339|gb|EAO33403.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 275/726 (37%), Positives = 367/726 (50%), Gaps = 63/726 (8%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L+ D ET SP+ + G+ YAE ++LFA+ D PV++WDC MP+ L AL Sbjct: 10 ILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALH 68 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121 N V + HNS+F+RTVL ++IP+ RW ++ A ++ LP AL + E L++ + Sbjct: 69 NPAVLLYFHNSHFDRTVL-RHCGINIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQ 127 Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++GK L+A FCK C R + H W F +Y + DV R++ KRL + Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLPSHN 187 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 EL W+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L L E G+ L D+ + T +R L + L ++ + R +AS ++ K L+ Sbjct: 248 ALLHHLSTEHGVALPDMQQHTVERCL-DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E + I + D Sbjct: 307 TSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDD 366 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL------- 408 + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF + Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTW 426 Query: 409 ---------------------------------YVTTYARSFNVAPAQVTKDQRAIGKVM 435 Y YA SF +AP VTK QR IGKV Sbjct: 427 HSGEAITHGALRGAPITLQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQ 486 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 ELALGY GG AF A+ ++L A P ++A W + NH Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMAAQAAL--PPLLLQEATELLEWTKANHRPTFGL 544 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 AC+ K+AWR H ++ W L A I + + + ++ + Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599 Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDI 609 L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+ Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669 LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG+E Sbjct: 660 LAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFE 719 Query: 670 SKRYRK 675 + RYRK Sbjct: 720 THRYRK 725 >gi|324115642|gb|EGC09580.1| DNA polymerase I [Escherichia coli E1167] Length = 928 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIELGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|159045449|ref|YP_001534243.1| DNA polymerase I [Dinoroseobacter shibae DFL 12] gi|157913209|gb|ABV94642.1| DNA polymerase I [Dinoroseobacter shibae DFL 12] Length = 932 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 99/718 (13%), Positives = 197/718 (27%), Gaps = 180/718 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET ++ ++ + D H Sbjct: 344 VVAVDTETTGLNEMR----------ADLVGVSLCVDPGRAAYLPLAHKDGGGADDLFGGE 393 Query: 51 ----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 +LK LE+ V + N ++ +L I + T++L+ Sbjct: 394 AKLAEGQLDFETALGMLKPVLEDPAVLKIGQNMKYDAKILARN---GITVAPIDDTMLLS 450 Query: 101 RSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 + + A+ E K L+ Sbjct: 451 YALHAGLHGHGMDALSERY--LDHTPIPIKTLL----------GTGKSAITFDFVPIEEA 498 Query: 158 GEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTL 207 +Y D +T +++RL+P E+ + + + RG VD + Sbjct: 499 TKYAAEDAEITLRLWQRLKPRLHLAQVTRVYEWMERPMVPVLAEMEMRGIKVDRDTLSRM 558 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVL 263 + + L+ E+ L + +L LF + G ++ T VL Sbjct: 559 SNAFAQKMAGLEAEIHELAG-ESFNVGSPAQLGEILFEKMGFEGGKTGKSGKYSTPADVL 617 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGC 322 +V + R S+ + L + +N + GR+ + GA+ TGR + Sbjct: 618 EDLATEHDLPRRVLDWRQ-LSKLKSTYTDALQDHINPETGRVHTSYSIAGAN-TGRLAST 675 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 QN+P S +R +A G LV D + Sbjct: 676 DPNLQNIPVRSEEGRR-------------------------IREAFVAEPGHVLVSLDYS 710 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R+LA +AG AF G D++ T + F+V ++T + R K + Sbjct: 711 QIELRILAHIAGIDALKTAFRDGLDIHAMTASEMFDVPLDEMTPEVRRQAKAINF----- 765 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 G++ A Sbjct: 766 ---------GVIYGIS------------------------------GFGLARNLRIPRAE 786 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + + ++ + ++ ++ + Sbjct: 787 AQAFIDTYFERFPGIRAYMDDTVAFAKEHK--------------------------YVQT 820 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----AT 618 GR + ++G R +Q + DI+ M+ Sbjct: 821 LFGRKIHTPEIGAK----GPQAGFAKRAAINAP------IQGTAADIIRRAMVRMPAAIA 870 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMT--SNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + + +M + P +PL + + + + Sbjct: 871 DLPARMLLQVHDELIFEVEEDAVDRVIPAVRQVMEGAAAPVVHLDVPLTVDAGQGRSW 928 >gi|300113291|ref|YP_003759866.1| DNA polymerase I [Nitrosococcus watsonii C-113] gi|299539228|gb|ADJ27545.1| DNA polymerase I [Nitrosococcus watsonii C-113] Length = 901 Score = 433 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 110/704 (15%), Positives = 203/704 (28%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S Y E ++ +F H H+ + Sbjct: 326 AFDLETNSLD---------YME-AEIVGLSFAIQPHEAMYIPLGHEDATAPPQLPREQVL 375 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 LK LE+ V N F+R VL +++ +++ + + + Sbjct: 376 ARLKPLLEDPRHGKVGQNLKFDRNVLANY-GIELQGIH-HDSMLESYVLDSTATRHNMDS 433 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + K L E + P ++ Y D ++ ++ Sbjct: 434 LAL------------KYLQRTTITYEMVAGKGSKQLPFNQVTIEKAAPYAAEDADISLQL 481 Query: 172 FKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + P +E+ L + + G VD T + + KL+Q Sbjct: 482 HRYFWPRIQQEESLRRLYQELEIPLIPVLSRMERNGVQVDTTQLKTQSDELAARLKKLEQ 541 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 E L + ++++ L+ + L + T +T + VL P ++ Sbjct: 542 EAFDLAG-ESFNLASPKQIQAILYEKLKLPVTRKTPTGQPSTAETVLQELALDYPLPQRL 600 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R S+ + L +N T + TGR S QN+P + Sbjct: 601 LQYR-TLSKLKSTYTDRLPLQVNPHTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTAEG 659 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA G +LV AD + IE R++A ++ ++ Sbjct: 660 RR-------------------------IRQTFIAPPGYRLVAADYSQIELRIMAHLSEDE 694 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AFE ED++ T F +VT +QR K + G Sbjct: 695 GLLAAFEAEEDIHQRTATEVFRTPLEEVTPEQRRSAKAINF--------------GLIYG 740 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + TA + + + Q++ Sbjct: 741 MS------------------------------AHGLGRQLGINRTAAQHYIERYFQRYPG 770 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + + Q Q + GR L D+ + Sbjct: 771 VKAYMDNICQQARQ--------------------------KGYVETLFGRRLYLPDIHSR 804 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKA--GYDIVLTVHD 630 ++ Q R +Q + DI+ M++ K +++ VHD Sbjct: 805 QT---QRRNQAERTAINAP------MQGSAADIIKRAMIHTDGWLQKNSDNARMIMQVHD 855 Query: 631 EIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E + + MT+ +PL E + Sbjct: 856 ELVFEVAEDKLEITMRAIRENMTAAAQ--LKIPLIVEIGSGANW 897 >gi|218707489|ref|YP_002415008.1| DNA polymerase I [Escherichia coli UMN026] gi|293407483|ref|ZP_06651402.1| DNA polymerase I [Escherichia coli FVEC1412] gi|298383226|ref|ZP_06992819.1| DNA polymerase I [Escherichia coli FVEC1302] gi|300896902|ref|ZP_07115390.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1] gi|218434586|emb|CAR15515.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli UMN026] gi|291425400|gb|EFE98439.1| DNA polymerase I [Escherichia coli FVEC1412] gi|298276260|gb|EFI17780.1| DNA polymerase I [Escherichia coli FVEC1302] gi|300359277|gb|EFJ75147.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1] Length = 928 Score = 433 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LEN V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLENEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R I E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIGPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|301169575|emb|CBW29176.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Haemophilus influenzae 10810] Length = 935 Score = 433 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 102/705 (14%), Positives = 213/705 (30%), Gaps = 165/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51 + +D ET S ++ ++ +F ++ + Sbjct: 359 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 408 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 +K LEN ++ + N F+ ++ +++ T++L+ + + Sbjct: 409 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 466 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G E IA E+ ++ EY D VT Sbjct: 467 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLEQATEYAAEDADVTM 514 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L E L ++ + G +D + + T L Sbjct: 515 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTAL 574 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 +++ +L + ++L+ LF + GL +T + VL Sbjct: 575 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 632 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ S+ + L + +NS T + TGR S QN+P + Sbjct: 633 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 692 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA EG +V AD + IE R++A ++G Sbjct: 693 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 727 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF G+D++ +T A F V+ +VT +QR K + Sbjct: 728 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------GLI 773 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + + ++ + Q++ Sbjct: 774 YGMS------------------------------AFGLSRQLGISRPDAQKYMDLYFQRY 803 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + ++ + + + GR L D+ Sbjct: 804 PSVQQFMTDIREKAKT--------------------------QGYVETLFGRRLYLPDIN 837 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629 ++ + + R +Q + DI+ M+ + ++++ VH Sbjct: 838 SSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIHHDPNIEMIMQVH 888 Query: 630 DEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + F + M S +PL E + + Sbjct: 889 DELVFEVRSEKVAFFREQIKQHMESAAELV--VPLIVEVGVGQNW 931 >gi|104779389|ref|YP_605887.1| DNA polymerase I [Pseudomonas entomophila L48] gi|95108376|emb|CAK13070.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Pseudomonas entomophila L48] Length = 922 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 105/701 (14%), Positives = 193/701 (27%), Gaps = 158/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET A+ ++ +F + + HD + Sbjct: 344 AFDTETTGLD----------AQQASIVGLSFAVEPNEAAYVPLAHDYEGAPAQLDREAVL 393 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ + N+ ++ +L + T++ + + Sbjct: 394 LALKPLLEDPAKGKIGQNAKYDINILANGSPAILMRGVAYDTMLESYVLDSTAT------ 447 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + + K L E + ++ G Y D VT + Sbjct: 448 --RHDMDSLAQ-KYLDHTTIGFEDIAGKGAKQLTFNQIPLEKAGPYAAEDADVTLRLHHA 504 Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223 L+ + + + I G VD AL + + + +L++E Sbjct: 505 LQARLANTPSVLPVLMDIEMPLVPVLAKIERQGALVDAALLGVQSGELGAKLVELEREAY 564 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNN 279 +L + ++L L+ + G+ + T +T + VL + +V Sbjct: 565 ALAG-EEFNLGSPKQLGAILYDKLGMPVLSKTAKGQPSTAEAVLDDLAEQGYPLPKVLMQ 623 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 S+ + L +N T + TGR S QN+P + Sbjct: 624 YRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPVRTAEGRR- 682 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +AS G KL+ AD + IE R++A +A ++ L Sbjct: 683 ------------------------IRQAFVASPGYKLLAADYSQIELRIMAHLAKDEGLL 718 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF D++ T A F VA A VT DQR K + G++ Sbjct: 719 HAFRNDLDVHRATAAEVFGVALADVTTDQRRSAKAIN--------------FGLIYGMSA 764 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + ++ V Sbjct: 765 FGLAKQI------------------------------GVDRKQSQDYIDRYFARYPGVLA 794 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + GR L D+ Sbjct: 795 YMERTRAQAAE--------------------------QGFVETLFGRRLYLPDINAKNPA 828 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 L + R +Q + DI+ M+ K ++L VHDE+V Sbjct: 829 LR---KGAERTAINAP------MQGTAADIIKRAMVAVDNWLTDSKLDARVILQVHDELV 879 Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + + M+ +PL E + Sbjct: 880 LEVREDLVEQVKDEIRGYMSGAAE--LDVPLLVEVGVGSNW 918 >gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae L20] gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 957 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 108/731 (14%), Positives = 217/731 (29%), Gaps = 192/731 (26%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53 + +D ET + ++ ++ +FG + H + Sbjct: 356 KLVAVDTETDNLDSMS----------ANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 405 Query: 54 --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 LK LEN DV + N ++ T+ Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH---G 462 Query: 88 IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + + T++ + + + + + G + I E Sbjct: 463 VQVAGVAFDTMLESYTLNSTGRHNMDELADRY--------LGHKTIEF----EEIAGKGK 510 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQELWYLDQTIN 193 + A + +Y D VT ++ + L P E L + I Sbjct: 511 NQLTFDKIAIDVASKYAAEDADVTMKLHQVLVPELDKTPTLVKLFNEIEMPLVEVLSRIE 570 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +D + ++ +L+Q + S V + ++L+ LF + GL + Sbjct: 571 RNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAG-EVFNLASTKQLQEILFTKLGLPVLK 629 Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTL 308 T +T + VL ++ S+ + L +N GR+ + Sbjct: 630 KTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY 689 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + TGR S QN+P + +R Sbjct: 690 HQAV-TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAF 723 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA +G K+V AD + IE R++A +A ++ + AF G+D++ T A F +A QVT +Q Sbjct: 724 IARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHCATAAEIFGLALDQVTSEQ 783 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + L G++ ++ Sbjct: 784 RRSAKAINFGLI--------------YGMSEFGLSNQ----------------------- 806 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 ++ + + Q++ V + ++ ++ Sbjct: 807 -------LGISRADAKKYMERYFQRYPAVQQFMTDIRESA-------------------- 839 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + GR L ++ ++ + + R +Q + D Sbjct: 840 ------SEKGYVETLFGRRLYLPEIKSSNAMRR---KAAERVAINAP------MQGTAAD 884 Query: 609 ILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLP 662 I+ M++ KA +++ VHDE+V E + + ++ M +P Sbjct: 885 IIKVAMIDIDKAIRGDDNIKMIMQVHDELVFEVKEELIEHYSQLIKAEMEKAIQ--LKVP 942 Query: 663 LKAEGYESKRY 673 L AE + Sbjct: 943 LIAEVGVGDNW 953 >gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 957 Score = 432 bits (1110), Expect = e-118, Method: Composition-based stats. Identities = 107/730 (14%), Positives = 214/730 (29%), Gaps = 190/730 (26%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53 + +D ET + ++ ++ +FG + H + Sbjct: 356 KLVAVDTETDNLDSMS----------ANLVGISFGLANGDACYIPLTHKEQVTLEPQQSD 405 Query: 54 --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 LK LEN DV + N ++ T+ Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH---G 462 Query: 88 IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + + T++ + + + + + G + I E Sbjct: 463 VQVAGVAFDTMLESYTLNSTGRHNMDELADRY--------LGHKTIEF----EEIAGKGK 510 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTIN 193 + A + +Y D VT ++ + L P E L + I Sbjct: 511 NQLTFDKIAIDIASQYAAEDADVTMKLHQVLSPELEKAPTLVKLFNEIEMPLVEVLSRIE 570 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +D + ++ +L+Q + S V + ++L+ LF + GL + Sbjct: 571 RNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAG-EVFNLASTKQLQEILFTKLGLPVLK 629 Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T +T + VL ++ S+ + L +N T Sbjct: 630 KTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHTSY 689 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 + TGR S QN+P + +R I Sbjct: 690 HQAVTATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAFI 724 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 A++G K+V AD + IE R++A +A ++ + AF G+D++ T A F +A QVT +QR Sbjct: 725 ANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQR 784 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + L G++ ++ Sbjct: 785 RSAKAINFGLI--------------YGMSEFGLSNQ------------------------ 806 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 ++ + + Q++ V + ++ ++ Sbjct: 807 ------LGISRADAKKYMERYFQRYPAVQQFMTDIRESA--------------------- 839 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + GR L ++ ++ + + R +Q + DI Sbjct: 840 -----SKKGYVETLFGRRLYLPEIKSSNAMRR---KAAERVAINAP------MQGTAADI 885 Query: 610 LAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPL 663 + M+ KA +++ VHDE+V E + + ++ M +PL Sbjct: 886 IKVAMIGIDKAIRGDENIKMIMQVHDELVFEVKEELIEHYSQLIKAEMEKAIQ--LKVPL 943 Query: 664 KAEGYESKRY 673 AE + Sbjct: 944 IAEVGVGDNW 953 >gi|300925951|ref|ZP_07141783.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1] gi|300417979|gb|EFK01290.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1] Length = 928 Score = 432 bits (1110), Expect = e-118, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGPAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|307823067|ref|ZP_07653297.1| DNA polymerase I [Methylobacter tundripaludum SV96] gi|307735842|gb|EFO06689.1| DNA polymerase I [Methylobacter tundripaludum SV96] Length = 930 Score = 432 bits (1110), Expect = e-118, Method: Composition-based stats. Identities = 106/705 (15%), Positives = 205/705 (29%), Gaps = 169/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S Y++ ++ +F HD + Sbjct: 355 AFDTETTSLD---------YSK-AQIVGVSFAVTPGKAAYVPLAHDYPGVPDQLDRSEIL 404 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 + L+ LEN + N ++ VL + + T++ + + Sbjct: 405 EKLRPLLENPRKAKLGQNLKYDTHVLANH-GIALRGIA-HDTMLESYVLNSTATKHNMDD 462 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + G E I E + + Y D +T ++ Sbjct: 463 LAKEY--------LGVETIHY----EDVAGKGAKQIGFQEVSIDQAAPYAAEDADITLQL 510 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E L + I + G +D A+ + + + L+Q Sbjct: 511 HQVLNAKLAQHPRLLELYSDMEVPLISVLARIENNGVLIDAAMLAQQSLELSSQIISLEQ 570 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 L + ++++ L+ + L +T + VL P + Sbjct: 571 HAHDLAGQT-FNLGSPKQIQDILYDQQKLPVLKKTPKGQPSTEESVLQELALDYPLPKLI 629 Query: 277 FNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R S+ + L + ++ GR+ + A+ TGR S QN+P S Sbjct: 630 LEYR-SLSKLKSTYTDKLPQQIDGQTGRIHTSYHQAIAA-TGRLSSSDPNLQNIPIRSEE 687 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + +R IA EGKK+V AD + IE R++A ++ + Sbjct: 688 GRK-------------------------IRQAFIAPEGKKIVAADYSQIELRIMAHLSAD 722 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + LKAF +D++ T A F VAP QVT D R K + Sbjct: 723 EGLLKAFSEEQDVHRATAAEVFGVAPEQVTTDLRRSAKAINF--------------GLIY 768 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + + ++ Sbjct: 769 GMSSFGLAQQ------------------------------LGLSRSQAQSYIDLYFARYP 798 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + + + + + GR L ++ + Sbjct: 799 GVKNYMDRIREQARE--------------------------QGYIETLFGRRLYLPEINS 832 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKA--GYDIVLTVH 629 + R +Q + DI+ M+ K +++ VH Sbjct: 833 RNAARRQY---AERTAINAP------MQGTAADIIKRAMIAADQWLYKEQPDAKMIMQVH 883 Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + + A+ + +M + +PL + + Sbjct: 884 DELVFEIAEEHVDDCAAKIRSIMCAAAD--LDVPLIVDIGIGNNW 926 >gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 917 Score = 432 bits (1110), Expect = e-118, Method: Composition-based stats. Identities = 111/706 (15%), Positives = 208/706 (29%), Gaps = 170/706 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54 D ET S Y E V+ +F + HD V+ Sbjct: 341 AFDTETTSLD---------YME-ARVVGVSFAIEPGKAAYVPFGHDYLGAPVQLTEAVVL 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111 LK LE+ V N ++R VL +++ + T++ + ++ + + Sbjct: 391 GKLKPLLEDPARLKVGQNLKYDRNVLLNH-GIELQGIAY-DTMLESYVLNSTASRHDMDS 448 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L A E + ++ Y D +T + Sbjct: 449 LARRY------------LNAETISFEEIAGKGVKQLTFNQIELEQAAPYAAEDADITLRL 496 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E L + + G ++ L H +Q ++V +L++ Sbjct: 497 HQALWGKLSAEPGLAKVFSEIELPLLPVLARMERLGTTIEPKLLHQQSQEIEVRLAELEK 556 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L LF + GL + T +T + VL+ + + Sbjct: 557 QAHELAGQ-EFNLSSPKQLGEILFTKLGLPIIKKTPKGAPSTAEEVLAELAETYELPQ-L 614 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 ++ + L + GR+ + A+ TGR S QN+P + Sbjct: 615 LMEHRGLAKLKSTYTDKLPLMIKPQTGRVHTSYHQAVAA-TGRLSSTDPNLQNIPVRNEQ 673 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R I G KLV AD + IE R++A ++G+ Sbjct: 674 GRR-------------------------IRQAFIPCAGYKLVAADYSQIELRIMAHLSGD 708 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF G+D++ T A F VA VT D R K + Sbjct: 709 KGLLTAFAEGKDIHKATAAEVFGVALEAVTSDMRRSAKAINF--------------GLIY 754 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + ++ + +++ Sbjct: 755 GMS------------------------------AFGLAKQLGIGRAEAQKYMDLYFERYP 784 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V E Q + GR L D+ + Sbjct: 785 GVLEYMERTRQQA--------------------------DAQGYVETLFGRRLYLPDIKS 818 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN-------ATKAGYDIVLTV 628 + L + R +Q + DI+ M+N +++ V Sbjct: 819 RNAGLR---KAAERAAINAP------MQGTAADIIKRAMINVDGWIRGIEDQSIRMLMQV 869 Query: 629 HDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E + +++ M++ +PL E + Sbjct: 870 HDELVFEIREEKLEEYIAIIKEKMSAAAE--LDVPLVVEAGTGDNW 913 >gi|84685270|ref|ZP_01013168.1| DNA polymerase I [Maritimibacter alkaliphilus HTCC2654] gi|84666427|gb|EAQ12899.1| DNA polymerase I [Rhodobacterales bacterium HTCC2654] Length = 932 Score = 432 bits (1110), Expect = e-118, Method: Composition-based stats. Identities = 99/715 (13%), Positives = 200/715 (27%), Gaps = 176/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET S ++ H Sbjct: 346 YVAVDTETTSLNEM----------QAEFAGICLAVVPGEACYIPVGHKVGDGEGLFADDK 395 Query: 51 --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 + LK LE+ + + N+ ++ + + + T++++ + Sbjct: 396 LAEGQLSLDDVLAALKPVLEDPAILKIFQNAKYDTKIFSRH---GLNVAPIDDTMLMSYA 452 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + + E G I+ +T + + Sbjct: 453 MFSGLHNHGMDTLSEHY--------LGHTPISI----KTLLGTGKSAITFDKVKIEDAVK 500 Query: 160 YCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D VT +++ +P +E + L + + G VD ++ Sbjct: 501 YAAEDADVTLRLWQLFKPRLHREKVTTVYETLERPLVPVLAQMEMHGVQVDRDTLSRMSN 560 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265 + L+ E+ L + ++L LF + GL +T T VL Sbjct: 561 AFAQKMAGLEAEIHELAGQS-FNVGSPKQLGEILFDKLGLEGGKKGKTGAYATGADVLED 619 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 +V + R S+ + L ++ D T + TGR + Sbjct: 620 LAAQHDLPARVLDWRQ-LSKLKSTYTDALQTHIDPDTGRVHTSYLQTGASTGRLASTDPN 678 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P + +R +A EGK LV D + IE Sbjct: 679 LQNIPIRTEEGRR-------------------------IREAFVAPEGKVLVSLDYSQIE 713 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +AG + +AF GED++ T + F+V ++T D R K + Sbjct: 714 LRILAHVAGIESMKQAFRDGEDIHAATASEMFDVPLDEMTPDVRRQAKAINF-------- 765 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ A + Sbjct: 766 ------GVIYGIS------------------------------GFGLARNLRIARGEAQG 789 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + +K+ + E ++ ++ + + G Sbjct: 790 FIDRYFEKYPGIKEYMDDTVAFAKE--------------------------HGHVATLFG 823 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--- 622 R + ++ R +Q + DI+ M+ A Sbjct: 824 RKIHTPEINAK----GPHAGFARRAAINAP------IQGSAADIIRRAMIRMPDAISGLP 873 Query: 623 -DIVLTVHDEIVCETPD-TDEFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + + S++ +M P+ +PL + + + Sbjct: 874 VKMLLQVHDELIFEVEEGGVDKAVSVIRDVMEGAADPAVKLDIPLVVDAGQGANW 928 >gi|273810426|ref|YP_003344897.1| DNA polymerase A [Xylella phage Xfas53] gi|257097801|gb|ACV41107.1| DNA polymerase A [Xylella phage Xfas53] Length = 726 Score = 432 bits (1110), Expect = e-118, Method: Composition-based stats. Identities = 275/726 (37%), Positives = 365/726 (50%), Gaps = 63/726 (8%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L+ D ET SP+ + G+ YAE ++LFA+ PV++WDC MP+ L AL Sbjct: 10 ILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGGGPVQVWDCTATATMPEELSAALH 68 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121 N V + HNS+F+RTVL + IP+ RW ++ A ++ LP AL + E L++ + Sbjct: 69 NPAVLLYFHNSHFDRTVL-RHCGISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQ 127 Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++GK L+A FCK C R + H W F EY + DVT R++ KRL + Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLPSHN 187 Query: 180 SKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E LW+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L L G+ L D+ + T +R L + L ++ + R +AS ++ K L+ Sbjct: 248 ALLHHLSTAHGVALPDMQQHTVERCL-DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E + I + D Sbjct: 307 TSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDD 366 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL------- 408 + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF + Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGTW 426 Query: 409 ---------------------------------YVTTYARSFNVAPAQVTKDQRAIGKVM 435 Y YA SF +AP VTK QR IGKV Sbjct: 427 HSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQ 486 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 ELALGY GG AF A+ ++L A P ++A W + NH Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMAAQAAL--PPLLLQEATELLEWTKANHRPTFGL 544 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 AC+ K+AWR H ++ W L A I + + + ++ + Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599 Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDI 609 L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+ Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDV 659 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669 LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG+E Sbjct: 660 LAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFE 719 Query: 670 SKRYRK 675 + RYRK Sbjct: 720 THRYRK 725 >gi|149378378|ref|ZP_01896080.1| DNA polymerase I [Marinobacter algicola DG893] gi|149357343|gb|EDM45863.1| DNA polymerase I [Marinobacter algicola DG893] Length = 911 Score = 432 bits (1110), Expect = e-118, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 210/705 (29%), Gaps = 168/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +Y D V+ +F + HD + Sbjct: 335 AFDTETTSL---------RYM-DADVVGVSFAIEPGEAAYVPFGHDYMGAPEQLDRDTVL 384 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111 LK LE+ + N +++ VL +++ T++ + + + + Sbjct: 385 SQLKPLLEDPKKAKLGQNLKYDKNVLANH-GINLNGIA-EDTMLESYVLNSVGSRHDMDS 442 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + G++ I E+ + ++ G Y D +T + Sbjct: 443 LAMQY--------LGEQTITF----ESIAGKGAKQLTFNQIELEQAGPYAAEDADITLRL 490 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P + L + + RG + + +Q + +L++ Sbjct: 491 HQALRPQLEKTGRLQEVYEKIDLPLVPVLSRMEQRGAMISASTLRKHSQELAERMAELEK 550 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 E + ++L+ + + GL + T +T + VL + Sbjct: 551 EAHEEAG-ESFNLGSPKQLQAIFYDKMGLPVVKKTPKGAPSTAEPVLQELAHEHTLPRLI 609 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R S+ +TL E ++ T + TGR S QN+P S Sbjct: 610 LEHR-SLSKLKSTYTDTLPELIHHRTGRIHTSYHQAVTATGRLSSSEPNLQNIPIRSEQG 668 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R +A EG KLV AD + IE R++A ++G++ Sbjct: 669 RR-------------------------IRQAFVAPEGYKLVAADYSQIELRIMAHLSGDK 703 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AFE GED++ T A F VA V+ DQR K + G Sbjct: 704 GLLTAFEKGEDIHRATAAEVFGVAVDDVSGDQRRSAKAINF--------------GLIYG 749 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + + + +++ Sbjct: 750 MSAFGLSRQLD------------------------------VGRHQAQEYIDRYFERYPA 779 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + + + + + + GR L ++ Sbjct: 780 VLKYMDNIRKQAHD--------------------------DGYVETFYGRRLYLPEINAR 813 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVH 629 + R +Q + DI+ M++ + ++L VH Sbjct: 814 NKQMQQA---AERTAINAP------MQGTAADIIKRAMVSVEDWLQEHHQDDARMILQVH 864 Query: 630 DEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE++ E ++ L M++ S +PL E + Sbjct: 865 DELILEVRESAVDTIREGLEKRMSAAAS--LDVPLLVEAGVGNNW 907 >gi|89092190|ref|ZP_01165144.1| DNA polymerase I [Oceanospirillum sp. MED92] gi|89083278|gb|EAR62496.1| DNA polymerase I [Oceanospirillum sp. MED92] Length = 922 Score = 432 bits (1110), Expect = e-118, Method: Composition-based stats. Identities = 104/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S Y E ++ +F + HD + Sbjct: 347 AFDTETTSLN---------YME-AELVGVSFAIEPGKAAYVPVAHDYMGAPEQITRETLL 396 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 + +K LE++D V + ++ VL +++ T++ + + + Sbjct: 397 EKMKPLLESSDHKKVGQHLKYDMNVLARY-GIELTGIE-FDTMLESYVLNSTATRHDMDS 454 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + L + K E + ++ Y D +T + Sbjct: 455 LADRY------------LGLKTIKFEDIAGKGKKQLTFNQIELEQAAPYAAEDADITLRL 502 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + + E+ L + I G VD ++ + + +L++ Sbjct: 503 HQAINAQLSKDETLTSVFNDIERPLIPVLSHIERNGALVDASMLGEQSIELAERMVELER 562 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+ LF E + + T +T + VL P + Sbjct: 563 QAYDIAG-KEFNLASPKQLQQILFEELSIPVIKKTPKGAPSTAEEVLQELALDYPLPKLI 621 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R S+ + L +N T + TGR S QN+P ++ Sbjct: 622 LEHR-SLSKLKSTYTDKLPLMINPGTGRIHTSYHQAVTATGRLSSTDPNLQNIPVRTQEG 680 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA EG K+V AD + IE R++A ++ +Q Sbjct: 681 RR-------------------------IRHAFIAPEGYKVVAADYSQIELRIMAHLSQDQ 715 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G D++ T A F V QV+ DQR K + G Sbjct: 716 GLLDAFSKGADIHRATAAEVFKVELDQVSDDQRRSAKAINF--------------GLIYG 761 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + + + + + + Sbjct: 762 MS------------------------------AFGLAKQLGIARKDAAQYIEHYFETYPG 791 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V +++ ++ + GR L ++ Sbjct: 792 VQHYMDDIRAKAQE--------------------------QGYVETLFGRRLYLPEIKAR 825 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHD 630 + R +Q + DI+ M+ K +++ VHD Sbjct: 826 NAMRRQA---AERTAINAP------MQGTAADIIKRAMVTVDKWLAESDFDVRMIMQVHD 876 Query: 631 EIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E DT + + M + +PL E + + Sbjct: 877 ELVFEVRDTQVDSFVEAVKDKMATAAD--LDVPLLVEAGVGENW 918 >gi|224823577|ref|ZP_03696686.1| DNA polymerase I [Lutiella nitroferrum 2002] gi|224604032|gb|EEG10206.1| DNA polymerase I [Lutiella nitroferrum 2002] Length = 887 Score = 432 bits (1110), Expect = e-118, Method: Composition-based stats. Identities = 104/705 (14%), Positives = 201/705 (28%), Gaps = 166/705 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM---- 53 + +D ET S + + ++ +F + H + Sbjct: 311 VVSLDTETTSLDQM----------EARLVGISFSVTEGEAAYLPLAHHYAGVPEQLDLAA 360 Query: 54 -PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110 LK LEN + N ++R VL + + TL+ + + Sbjct: 361 TLARLKPWLENPARKKLGQNLKYDRHVLANH-GIALAGVA-DDTLLASYVIESHLTHNMD 418 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + G+ ++ E + + Y D +T Sbjct: 419 DLARRH--------LGESTVSY----EEICGKGAKQIGFAEVDIAVASNYAAEDADITLR 466 Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + + L E + + + G +D + + + +L+QE Sbjct: 467 LNRALAGKLEGRLASVYRDIELPVAEVLFAMERNGVLIDRQRLAEQSHQLGSQMLQLEQE 526 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTET----TCQRVLSSNKKLTPQAIQ 275 + ++L+ LF + G+ + T + T + VL P Sbjct: 527 AYQQAGQP-FNLNSPKQLQEILFGKLGIDTKGVKKTPSGGFSTDESVLEQLALDHPLPKL 585 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R ++ + L + D T + TGR S QN+P + Sbjct: 586 ILQYR-GLAKLKSTYTDKLPSLIRPDTGRVHTNYAQAVAITGRLSSSDPNLQNIPVRTAE 644 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 VR IA G ++V AD + IE R++A ++ + Sbjct: 645 GRR-------------------------VREAFIAPPGHRIVSADYSQIELRIMAHLSDD 679 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF +GED++ TT A F V QVT +QR K + L Sbjct: 680 ANMLAAFASGEDIHKTTAAEVFGVTREQVTSEQRRAAKAINFGLI--------------Y 725 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + A ++ + + Sbjct: 726 GMSAFGLAAQLDIE------------------------------RNAAQQYIDRYFMRFP 755 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V++ + + + GR L ++ Sbjct: 756 GVADYMQRTREMARE--------------------------QGYVETVFGRRLYLPEIRA 789 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVH 629 + + R +Q + D++ M+ + G +++ VH Sbjct: 790 SNPGRRS---GAERAAINAP------MQGTAADLIKLAMIAVQRWLVAEGLGSKLIMQVH 840 Query: 630 DEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E P+ + L +M +PL AE + + Sbjct: 841 DELVLEVPEAELARVKERLPQIMAGVAE--LKVPLLAEVGAGESW 883 >gi|89074464|ref|ZP_01160941.1| DNA polymerase I [Photobacterium sp. SKA34] gi|89049752|gb|EAR55302.1| DNA polymerase I [Photobacterium sp. SKA34] Length = 923 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 97/705 (13%), Positives = 198/705 (28%), Gaps = 168/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET +T V+ +F ++ HD + Sbjct: 347 AFDTETDGLDYMT----------ANVVGVSFAIEEGKAAYVPLAHDYLDAPAQLDRDWVL 396 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 + LK LE+ + N F+ +++ +++ T++ + + + Sbjct: 397 EQLKPLLEDPKQAKIGQNLKFDASIVARY-GIEMQGI-VFDTMLESYVFNSVVGRHDMDS 454 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L + E + ++ G Y D +T + Sbjct: 455 LALRY------------LEHKNISFEEVAGKGKKQLTFNQIDLEQAGPYAAEDADITLRL 502 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + + G VD L + + V ++++ Sbjct: 503 HNTLYPKVEADDKLKHVFENIEMPLVPVLSRMERTGVYVDSMLLGAQSTEIAVRLDEIEK 562 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + + + ++L+ LF + GL T +T + VL P + Sbjct: 563 KAFEI-AEQEFNLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDYPLPKLL 621 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L + +N T + TGR S QN+P + Sbjct: 622 LEYR-GLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEG 680 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R +A G K++ D + IE R++A ++G++ Sbjct: 681 RR-------------------------IRQAFVAQSGYKILAVDYSQIELRIMAHLSGDK 715 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A ++ V+ +QR K + G Sbjct: 716 ALLDAFRHGKDIHAATAAEILSLDIENVSSEQRRRAKAINF--------------GLIYG 761 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + + + +++ Sbjct: 762 MSAFGLAKQLDM------------------------------GRNEAQNYMNVYFERYPG 791 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E A + GR L D+ + Sbjct: 792 VLEYMESTRNAA--------------------------SEQGYVETLFGRRLYLPDIKSR 825 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVH 629 + R +Q + DI+ M+ + +++ VH Sbjct: 826 NGLRR---KAAERAAINAP------MQGTAADIIKLAMIAVDDWVQQQPEGDVRLLMQVH 876 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E ++ + + LM +PL A+ + Sbjct: 877 DELVFEVKESALEAVTASVKALMEQAA--MLDVPLIADTGYGDNW 919 >gi|319792363|ref|YP_004154003.1| DNA polymerase i [Variovorax paradoxus EPS] gi|315594826|gb|ADU35892.1| DNA polymerase I [Variovorax paradoxus EPS] Length = 937 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 110/704 (15%), Positives = 208/704 (29%), Gaps = 167/704 (23%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQ 55 ID ET S ++ ++ +F + H+ + Sbjct: 365 IDTETTSLDEMV----------AQIVGVSFSVEPGEAAYIPLTHNYPDAPAQLPIDEVLA 414 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG 113 LK LEN + + + ++R V +++ + T++ + + P L ++ Sbjct: 415 KLKPWLENPEKKKLGQHIKYDRHVFANH-GIEVEGYA-HDTMLQSYVLEVHKPHGLASLA 472 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 E L E + EY D T ++ + Sbjct: 473 ERH------------LGRSGISYEDLCGKGAHQISFSQVDIAKAAEYSCEDSDQTLDVHR 520 Query: 174 RLEPLSSKEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P ++L ++ Q + G +D A + + L+QE Sbjct: 521 TLWPQLEANEKLRFVYQLEMDSSEALYRVERNGVMIDSATLAAQSHELGTRIMALEQEAY 580 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 + + +++ F + GL + T + T + VL + P ++ + Sbjct: 581 EIAGQP-FNLGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKILEH 639 Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ + L + N GR+ A TGR S QN+P + Sbjct: 640 R-GLSKLKGTYTDKLGQLANPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPIRTPEGRR 697 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 VR +A G + AD + IE R++A ++G++ Sbjct: 698 -------------------------VREAFVAPAGSVIASADYSQIELRIMAHISGDESL 732 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF G D++ T A F P QV+ +QR KV+ G++ Sbjct: 733 LRAFTEGIDVHRATAAEVFGSTPDQVSSEQRRYAKVIN--------------FGLIYGMS 778 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A A + + ++ V Sbjct: 779 SFGL------------------------------AKNLGIETKAAASYIERYFARYPGVK 808 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 +E ++ + GR L ++ + Sbjct: 809 AYMDETKALAKE--------------------------QGYVETVFGRRLYLPEINSPNG 842 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 R +Q + D++ M+ K +++ VHDE+ Sbjct: 843 PRRG---GAERAAINAP------MQGTAADLIKLSMVKVQNVLDEEKRATKMIMQVHDEL 893 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V E P+ + + + LM A +PL AE + K Sbjct: 894 VFEVPEAEVEWVRAEIPRLMAGVA--ALKVPLLAEIGIGPNWDK 935 >gi|24115152|ref|NP_709662.1| DNA polymerase I [Shigella flexneri 2a str. 301] gi|24054427|gb|AAN45369.1| DNA polymerase I, 3 --> 5 polymerase, 5 --> 3 and 3 --> 5 exonuclease [Shigella flexneri 2a str. 301] Length = 928 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 101/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEHADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------LGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069] gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069] Length = 915 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 110/702 (15%), Positives = 209/702 (29%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 D ET S + + ++ +F D+ H + Sbjct: 341 AFDTETTSLNYI----------EAELVGMSFALDNGEAAYLPVAHSYMGAPEQLERDEVL 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113 + LK LE+ V N ++ +VL DI + T++ + ++ Sbjct: 391 KQLKPLLESEKHKKVGQNLKYDMSVLANY---DIELAGIEFDTMLESYCLNSVAS----- 442 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + L K E + Y D +T + + Sbjct: 443 ---RHDMDTLAL-HHLNHVNIKFEEIAGKGKNQLTFDQIEVEQAAPYASEDADITMRLHQ 498 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 +L P + L + + G VD L + + + +L++E Sbjct: 499 KLWPELKQNEGPTQIFQHIEMPLLRILSKVERNGVLVDGKLLLEKSHLFEKRLKELEKEA 558 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ + E GL +T + VL P + Sbjct: 559 YEIAG-KEFNLGSPKQLQVIFYEELGLPILKKTPKGQPSTAEEVLQELALDYPLPKLILE 617 Query: 279 NRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R S+ + L + + GR+ + A+ TGR S QN+P + Sbjct: 618 HR-GLSKLKSTYTDKLPRMISDKTGRVHTSYHQAIAA-TGRLSSTEPNLQNIPIKTEEGR 675 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R+ IA +G K++ AD + IE R++A ++ ++ Sbjct: 676 -------------------------SIRTAFIAPKGSKILAADYSQIELRIMAHLSQDEG 710 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 LKAFE G D++ T A F+V +VT +QR K + L Y G+ Sbjct: 711 LLKAFEEGLDVHSATAAEVFDVPLDEVTSNQRRNAKAINFGLIY--------------GM 756 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A + T+ + + ++ V Sbjct: 757 SAFGLAKQIDTD------------------------------RNTAQDYINTYFARYPGV 786 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + + GR L ++ + Sbjct: 787 ETYMESTKEKA--------------------------ADLGYVETLYGRRLYLPEIHSKN 820 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGYDIVLTVHDEI 632 + R +Q + DI+ M+ K G +++ VHDE+ Sbjct: 821 GMRR---KAAERTAINAP------MQGSAADIIKLAMLEVDKWLKDVKGIKMIMQVHDEL 871 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E + A + LM S +PL A+ + Sbjct: 872 VFEVEEDKLELAQKEIPKLMQSVAE--LSVPLIADVGVGDNW 911 >gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700] gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700] Length = 985 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 98/705 (13%), Positives = 203/705 (28%), Gaps = 165/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----------HDP 51 + +D ET ++ ++ +F ++ Sbjct: 409 KLIAVDTETDGLDYMS----------ANLVGVSFALENGEAAYLPLHLDYLGAPKTLEKS 458 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 LK LEN ++ V N F+ T+ +++ T++L+ + + Sbjct: 459 TALAALKPILENPNIGKVGQNLKFDMTIFARN-GIELRGIE-FDTMLLSYTLDSTGRHNM 516 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G + I E ++ GEY D VT Sbjct: 517 DDLAKRY--------LGHQTIGF----EDIAGKGKNQLTFNQIPLEQAGEYAAEDADVTM 564 Query: 170 EIFKRLEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L + L L Q + G +D + + T L Sbjct: 565 KLQQVLWEKLKSQPSLVELYQSIELPLLGVLSRMERCGVLIDSDALFLQSNEITERLTAL 624 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 + + L + ++L+ LF + GL +T + VL Sbjct: 625 EMQAHELAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELAYSHELPK 683 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R S+ + L + +N T + TGR S QN+P + Sbjct: 684 VLVEHR-GLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 742 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA +G K++ AD + IE R++A ++ Sbjct: 743 EGRR-------------------------IRQAFIARDGYKIIAADYSQIELRIMAHLSN 777 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF G+D++ +T A F + QVT +QR K + Sbjct: 778 DAGLINAFAQGKDIHRSTAAELFGLPLEQVTSEQRRNAKAINF--------------GLI 823 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + +R + Q++ Sbjct: 824 YGMSSFGLSRQ------------------------------LGISRADAQRYMDLYFQRY 853 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V +++ + + + GR L ++ Sbjct: 854 PGVQTFMHDIREKAK--------------------------AQGYVETLFGRRLYLPEIN 887 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629 ++ + + R +Q + DI+ M+ + +++ VH Sbjct: 888 SSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEITRDDPDIHMIMQVH 938 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E ++ M + +PL + + + Sbjct: 939 DELVFEVRSEKIAFFSDLIKQHMEAAAELV--VPLIVDVGVGENW 981 >gi|71905805|ref|YP_283392.1| DNA polymerase A [Dechloromonas aromatica RCB] gi|71845426|gb|AAZ44922.1| DNA polymerase A [Dechloromonas aromatica RCB] Length = 906 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 110/704 (15%), Positives = 199/704 (28%), Gaps = 168/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 +D ET S ++ + H + Sbjct: 332 ALDTETTSLDSFA----------ARIVGISLSVTPGEACYIPLAHTAPGVADQLPREEVL 381 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAV 112 LK LE+ V N+ +++ V + + T++ + L + Sbjct: 382 ARLKSWLESAAHKKVLQNAKYDQHVFANH-GIALSGIA-HDTMLQSYVIESDKGHDLGQL 439 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 G IA E + + Y D VT + Sbjct: 440 CTRH--------LGLATIAY----EDLCGKGAKQITFDQVDIERAATYAAEDSDVTLRVH 487 Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 L P E + I G +D + + + + L+ + Sbjct: 488 NVLHPQFASEPGLSRIYHEIEMPARQVIWQIERNGILIDSDVLSRQSHEMGQKIMALEAQ 547 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 L + ++L LF + GL ++ T + T + VLS P + Sbjct: 548 AYELAGQP-FNLASPKQLADILFEKQGLPVKKKTPSGGPSTDEEVLSELALDYPLPKLLL 606 Query: 278 NNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R S+ + L +N GR+ A TGR + QN+P S Sbjct: 607 EHR-SLSKLKGTYTDKLPRMVNPQTGRVHTHFSQA-AVVTGRLASSDPNLQNIPVRSEEG 664 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + +R+ IA G +V AD + IE R++A ++G++ Sbjct: 665 RK-------------------------IRTAFIAPAGSSIVSADYSQIELRIMAHLSGDE 699 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF GED++ T F V P +V DQR + K + G Sbjct: 700 RLLDAFAHGEDVHKATAGEIFGVTPLEVGPDQRRVAKSINF--------------GLIYG 745 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + +A + + ++ Sbjct: 746 MS------------------------------AFGLARQLGLERSAAQTYIDRYFARYPG 775 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V+ E ++ Q + + GR L + D+ ++ Sbjct: 776 VARYMEEARESARQ--------------------------HGYVETAFGRRLWFPDIRSS 809 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630 R +Q + D++ M+ ++L VHD Sbjct: 810 NGNRRQ---GAERAAINAP------MQGTAADLIKLAMIAVQNWLEKSALKSRLILQVHD 860 Query: 631 EIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E++ E PD + + L LM +PL E + Sbjct: 861 ELLLEVPDGELMDVRTHLPRLMGQVAE--LKVPLVVEVGVGPNW 902 >gi|284923965|emb|CBG37064.1| DNA polymerase I [Escherichia coli 042] Length = 928 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 101/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPSVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R I E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIGPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|311281673|ref|YP_003943904.1| DNA polymerase I [Enterobacter cloacae SCF1] gi|308750868|gb|ADO50620.1| DNA polymerase I [Enterobacter cloacae SCF1] Length = 928 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 102/701 (14%), Positives = 205/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + HD Sbjct: 353 AFDTETDSLDN----------HSANMVGLSFACEPGVAAYVPVAHDYIGAPEQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ V N ++R +L +++ W T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAW-DTMLESYTLDSVAG------ 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + E + L + E ++ G Y D VT ++ + Sbjct: 455 --RHDMDSLSE-RWLKHKTITFEEIAGKGKNQLTFNQIDLEQAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K L + I G +D + ++ + + +L+Q+ Sbjct: 512 MWPKLQKREGPLNVFRNIEMPLVPVLSRIERNGVKIDPQVLQKHSEEITLRLAELEQKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 572 DIAG-EPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 KAF G+D++ T A F + V+ +QR K + G++ Sbjct: 725 KAFAEGKDIHRATAAEVFGLPLESVSAEQRRSAKAINF--------------GLIYGMS- 769 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + ++ + +++ V E Sbjct: 770 -----------------------------AFGLSRQLNIPRKESQKYMDLYFERYPGVLE 800 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ + Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + +Q + DI+ M+ +++ VHDE+V Sbjct: 835 RRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQEEQPRVRMIMQVHDELV 885 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E ++ LM S+ A +PL E + Sbjct: 886 FEVHKDALDAVSKKIHELMESSM--ALDVPLLVEVGSGDNW 924 >gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP] gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP] Length = 930 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 102/705 (14%), Positives = 209/705 (29%), Gaps = 165/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51 + +D ET S ++ ++ +F ++ + Sbjct: 354 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 +K LEN D+ + N F+ ++ +++ T++L+ + + Sbjct: 404 TALAAIKPILENPDIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 461 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G E IA E+ ++ EY D VT Sbjct: 462 DDLAKRY--------LGHETIAF----ESIAGKGKNQLTFNQIPLEQATEYAAEDADVTM 509 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L E L ++ + G +D + + T L Sbjct: 510 KLQQALWLKLQQEPTLVELYKTMELPLLHVLSRMERTGVLIDSNALFMQSNEIATRLTAL 569 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 +++ L + ++L+ LF + GL +T + VL Sbjct: 570 EEQAYELAGQP-FNLASTKQLQEILFDKLGLPILQKTPKGAPSTNEEVLEELAYSHELP- 627 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ S+ + L + +NS T + TGR S QN+P + Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA EG +V AD + IE R++A ++G Sbjct: 688 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 722 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF G+D++ +T A F V+ +VT +QR K + Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------GLI 768 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + + ++ + Q++ Sbjct: 769 YGMSAFGLSRQLDI------------------------------SRPDAKKYMDLYFQRY 798 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + ++ + + + GR L D+ Sbjct: 799 PSVQQFMTDIREKAK--------------------------AQGYVETLFGRRLYLPDIN 832 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-----IVLTVH 629 ++ + + R +Q + DI+ M+ + Y +++ VH Sbjct: 833 SSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIYHDPDIEMIMQVH 883 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + M +PL E + + Sbjct: 884 DELVFEVRSEKVEFFREQIKQQMEDASELV--VPLIVEVGVGQNW 926 >gi|28199026|ref|NP_779340.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|28199602|ref|NP_779916.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182681748|ref|YP_001829908.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|182682343|ref|YP_001830503.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|28057124|gb|AAO28989.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|28057717|gb|AAO29565.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182631858|gb|ACB92634.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|182632453|gb|ACB93229.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|307578624|gb|ADN62593.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] gi|307580177|gb|ADN64146.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 726 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 275/726 (37%), Positives = 366/726 (50%), Gaps = 63/726 (8%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L+ D ET SP+ + G+ YAE ++LFA+ + PV++WDC MP+ L AL Sbjct: 10 ILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGEGPVQVWDCTATATMPEELSAALH 68 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121 N V + HNS+F+RTVL + IP+ RW ++ A ++ LP AL + E L++ + Sbjct: 69 NPAVLLYFHNSHFDRTVL-RHCGISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQ 127 Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++GK L+A FCK C R + H W F EY + DVT R++ KRL + Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLPSHN 187 Query: 180 SKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E LW+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L L G+ L D+ + T +R L + L ++ + R +AS ++ K L+ Sbjct: 248 ALLHHLSTAHGVALPDMQQHTVERCL-DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E + I + D Sbjct: 307 TSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDD 366 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL------- 408 + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF + Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGTW 426 Query: 409 ---------------------------------YVTTYARSFNVAPAQVTKDQRAIGKVM 435 Y YA SF +AP VTK QR IGKV Sbjct: 427 HSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQ 486 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 ELALGY GG AF A+ ++L A P ++A W + NH Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMAAQAAL--PPLLLQEATELLEWTKANHRPTFGL 544 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 AC+ K+AWR H ++ W L A I + + + ++ + Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599 Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDI 609 L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+ Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDV 659 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669 LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG+E Sbjct: 660 LAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFE 719 Query: 670 SKRYRK 675 + RYRK Sbjct: 720 THRYRK 725 >gi|92112681|ref|YP_572609.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043] gi|91795771|gb|ABE57910.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043] Length = 928 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 103/705 (14%), Positives = 198/705 (28%), Gaps = 163/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51 D ET S Y E ++ D H Sbjct: 350 DIFCFDLETTSLN---------YME-ADIVGIGLSLDAGEAAYIPVAHRYLDAPEQLDRA 399 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LK 110 + LK E+ + N ++ +VL ++++ R T++ + + Sbjct: 400 SVLAALKPLWEDPAKAKIGQNLKYDISVLARY-DIEVA-GRLEDTMLASYVLNATATRHD 457 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 ALK +K +E + + A Y DV +T Sbjct: 458 MDSLALKYLGEKTISFEE----------IAGKGAKQLTFDQIALEQAAPYACEDVDITLR 507 Query: 171 IFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L P E L + + G +D H ++ ++ +L+ Sbjct: 508 LHRELRPRVDGEGRLAAVLDDIELPLVPVLSRMERNGVALDAERLHAQSRELEKRLRELE 567 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 L + ++L LF E + + T +T + VL P Sbjct: 568 TRAYELAG-REFNLGSPKQLGEILFDELKIPVIKKTPKGAPSTAEAVLEELALDYPLPKV 626 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +R ++ + L + +N+ R T + TGR S QN+P + Sbjct: 627 IIEHR-GFAKLKSTYTDKLPQLVNATTRRLHTSYHQAVTATGRLSSSDPNLQNIPIRTEE 685 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + +R +A G ++V AD + IE R++A ++G+ Sbjct: 686 GRK-------------------------IRQAFVARPGYRIVAADYSQIELRIMAHLSGD 720 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF G D++ T A F VA V+ +QR K + Sbjct: 721 KGLLDAFAEGRDIHTATAAEVFGVALDAVSGEQRRSAKAINF--------------GLIY 766 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + + + ++ Sbjct: 767 GMS------------------------------AWGLGRQLHIERNQAQTYIDRYFDRYP 796 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V+ + ++ + GR L ++ Sbjct: 797 GVARFMERIRAQA--------------------------ADDGYVETVFGRRLYLPEINA 830 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629 T + R +Q + DI+ M++ + +V+ VH Sbjct: 831 QN---RTRRQAAERTAINAP------MQGTAADIIKLAMIDVDRWLREGDFDAWMVMQVH 881 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + + M +PL E + Sbjct: 882 DELVFEVKEAQVDAFTDAVRQRMEGAAK--LDVPLTVEANAGDNW 924 >gi|323499675|ref|ZP_08104643.1| DNA polymerase I [Vibrio sinaloensis DSM 21326] gi|323315276|gb|EGA68319.1| DNA polymerase I [Vibrio sinaloensis DSM 21326] Length = 929 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 102/706 (14%), Positives = 201/706 (28%), Gaps = 164/706 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 D ET S + ++ +F ++ HD Sbjct: 350 DVFAFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPAQLDRD 399 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALK 110 + + LK LE+ V N ++ +VL +++ + T++ + Sbjct: 400 WVLEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHD 457 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 AL+ E + ++ Y D VT Sbjct: 458 MDSLALRFLQHS----------CISFEQIAGKGKKQLTFNQIELDEASPYAAEDADVTLR 507 Query: 171 IFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + RL +++ L + I G +D +Q + +L+ Sbjct: 508 LHNRLMENIDQDEKLKAIYQEIEVPLVPVLSRIERTGVLIDDMKLSAQSQEIAQRLDELE 567 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQ 275 Q+ + + ++L+ LF + GL T +T + VL P Sbjct: 568 QKAYEI-AEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKL 626 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R ++ + L + +N + T + TGR S QN+P + Sbjct: 627 ILEYR-GLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNDE 685 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA G K++ D + IE R++A ++G+ Sbjct: 686 GRR-------------------------IRQAFIAPHGYKIMAVDYSQIELRIMAHLSGD 720 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 Q L AF+ G+D++ T A QV+ +QR K + Sbjct: 721 QALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNF--------------GLIY 766 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + + +++ Sbjct: 767 GMS------------------------------AFGLAKQLGIPRGEAQDYMNKYFERYP 796 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + + A + + GR L ++ + Sbjct: 797 GVMQYMEDTRSAA--------------------------ADQGYVETIFGRRLHLPEIKS 830 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTV 628 + R +Q + DI+ + M+ + +++ V Sbjct: 831 RNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQAEGQGRVKLLMQV 881 Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E ++ + LM S +PL AE + Sbjct: 882 HDELVFEVEESSLAEIESKVQQLMESAAD--LDVPLVAEAGHGDNW 925 >gi|148545397|ref|YP_001265499.1| DNA polymerase I [Pseudomonas putida F1] gi|148509455|gb|ABQ76315.1| DNA polymerase I [Pseudomonas putida F1] Length = 915 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 105/702 (14%), Positives = 193/702 (27%), Gaps = 160/702 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET A+ ++ +F + H HD + Sbjct: 337 AFDTETTGLD----------AQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVL 386 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG 113 LK LE+ V N+ ++ +L +++ + T++ + + Sbjct: 387 LALKPLLEDPAKAKVGQNAKYDINILANGSPPIEMRGVAY-DTMLESYVLNSTAT----- 440 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + K L E + ++ G Y D +T + Sbjct: 441 ---RHDMDSLAQ-KYLDHTTIAFEDIAGKGAKQLTFNQITLDKAGPYAAEDADITLRLHH 496 Query: 174 RLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQEL 222 L+ ++ + + I G VD L + + V+ +L+ Sbjct: 497 ALQARLAQTPSVQPVLMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKMAELELRA 556 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L T L+ + G+ + T +T + VL + +V Sbjct: 557 YELAG-ETFNLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVLDELAEQGYPLPEVLM 615 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 S+ + L +N T + TGR S QN+P + Sbjct: 616 QYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAEGRR 675 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IAS G KL+ AD + IE R++A +A ++ Sbjct: 676 -------------------------IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF D++ T A F VA VT DQR K + G++ Sbjct: 711 LHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAIN--------------FGLIYGMS 756 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + ++ V Sbjct: 757 AFGLAKQI------------------------------GVDRKQSQDYIDRYFARYPGVL 786 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + GR L D+ Sbjct: 787 AYMERTRAQAAE--------------------------QGFVETLFGRRLYLPDINAKNP 820 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632 L + R +Q + DI+ M+ ++L VHDE+ Sbjct: 821 ALR---KGAERTAINAP------MQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDEL 871 Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E + + M+ +PL E + Sbjct: 872 VLEVREDLVEQVKDEIRQHMSQAAQ--LDVPLLVEAGVGANW 911 >gi|239814549|ref|YP_002943459.1| DNA polymerase I [Variovorax paradoxus S110] gi|239801126|gb|ACS18193.1| DNA polymerase I [Variovorax paradoxus S110] Length = 940 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 110/704 (15%), Positives = 204/704 (28%), Gaps = 167/704 (23%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQ 55 ID ET S ++ ++ +F + H+ + Sbjct: 368 IDTETTSLDEMV----------ARIVGVSFSIEPGAAAYVPLAHNYPDAPAQLPFDEVLA 417 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG 113 LK LEN + + ++R V +++ + T++ + P L ++ Sbjct: 418 RLKPWLENPAKKKLGQHIKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEAHRPHGLASLA 475 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 E L E P + EY D T ++ Sbjct: 476 ERH------------LGRSGISYEDLCGKGAHQIPFSQVDIAKAAEYSCEDSDQTLDVHL 523 Query: 174 RLEPLSSKEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P ++++L ++ Q + G +D + + L+QE Sbjct: 524 ALWPQIERDEKLRFIYQLEMDSSEALYRVERNGVLIDAPTLAAQSHELGTRIMALEQEAY 583 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 + + +++ F + GL + T + T + VL + P ++ + Sbjct: 584 EIAGQP-FNLGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKILEH 642 Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ + L + N GR+ A TGR S QN+P + Sbjct: 643 R-GLSKLKGTYTDKLGQLANPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPIRTPEGRR 700 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 VR IA G + AD + IE R++A ++G++ Sbjct: 701 -------------------------VREAFIAPPGSVIASADYSQIELRIMAHISGDESL 735 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF G D++ T A F P QV+ +QR KV+ G++ Sbjct: 736 LRAFREGIDVHRATAAEVFGATPDQVSSEQRRYAKVIN--------------FGLIYGMS 781 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A A + ++ V Sbjct: 782 SFGL------------------------------ARNLGIETKAAASYIDRYFARYPGVK 811 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 +E ++ + GR L ++ + Sbjct: 812 AYMDETKALAKE--------------------------KGYVETVFGRRLYLPEINSPNG 845 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 R +Q + D++ M+ K +++ VHDE+ Sbjct: 846 PRRG---GAERAAINAP------MQGTAADLIKLSMIKVQNVLDEEKRATRMIMQVHDEL 896 Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V E P+ + + LM +PL AE + K Sbjct: 897 VFEVPEAEIEWVRTEIPRLMAGVAE--LKVPLLAEIGIGPNWDK 938 >gi|308051440|ref|YP_003915006.1| DNA polymerase I [Ferrimonas balearica DSM 9799] gi|307633630|gb|ADN77932.1| DNA polymerase I [Ferrimonas balearica DSM 9799] Length = 922 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 106/705 (15%), Positives = 200/705 (28%), Gaps = 169/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 ID ET S + ++ +F + HD + Sbjct: 347 AIDTETTSIDYMA----------AELVGLSFAVEAGKGAYLPVAHDYEGAPVQLDRDTVL 396 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 LK LE+T V N ++ +VL + + T++ + + Sbjct: 397 AKLKPLLEDTAPRKVGQNLKYDMSVLAKY-GIALNGIA-FDTMLESYCFNSTAGRHNMDD 454 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + G + I E + K ++ Y D +T + Sbjct: 455 MALKY--------LGHKTIHF----EDIAGKGAKQKTFNQIPLEEAAPYAAEDADITLRL 502 Query: 172 FKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P + E+ L + + G +D H + + L+Q Sbjct: 503 HQHLWPRLQELAGPTRVFEQLERPLVPIMSAMERHGVLIDTDQLHQQSSEIATTLDSLEQ 562 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + V + ++L+ F + G + T +T + VL P + Sbjct: 563 QAHEIAG-EVFNLGSTKQLQAIFFDKLGYPVLKKTPKGAPSTAEEVLQELALDYPLPKII 621 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R ++ + L + + GR+ + + TGR S QN+P + Sbjct: 622 LEHR-SLAKLKNTYTDKLPQLVKPSGRVHTSYHQAV-TATGRLSSSDPNLQNIPIRTAEG 679 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA EG KL+ D + IE R++A ++ ++ Sbjct: 680 RR-------------------------IRQAFIAPEGYKLLAIDYSQIELRIMAHLSQDK 714 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF G+D++ T A F V VT +QR K + G Sbjct: 715 GLLEAFAAGKDIHKATAAEVFGVDFDSVTTEQRRRAKAVNF--------------GLIYG 760 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + + + ++ Sbjct: 761 MSAFGLAKQLDI------------------------------GRAEAQEYIDRYFHRYPG 790 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E + + GR L ++ Sbjct: 791 VLEYMDRTRAQAHD--------------------------KEYVETLMGRRLHLPEINAR 824 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVH 629 R +Q + DI+ + M+ + +++ VH Sbjct: 825 NKMRQQA---AERTAINAP------MQGTAADIIKKAMLLVADYLSQQAEDEIHLIMQVH 875 Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + L LM+ +PL AEG + Sbjct: 876 DELVFEVREGVAEQHKDALCELMSQAAE--LDVPLLAEGGLGDNW 918 >gi|312882610|ref|ZP_07742349.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122] gi|309369695|gb|EFP97208.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122] Length = 927 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 105/706 (14%), Positives = 206/706 (29%), Gaps = 164/706 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 + D ET S Y E ++ +F ++ HD Sbjct: 348 DVIAFDTETDSLD---------YME-ANLVGVSFAIEEGVAAYVPVAHDYMDAPKQLERD 397 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALK 110 + + LK LE+ V N ++ +VL +D+ + T++ + Sbjct: 398 WVLEQLKPILEDGSRAKVGQNLKYDASVLARY-GIDMRGIK-FDTMLASYVYNSVAGKHD 455 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 AL+ E + ++ Y D VT Sbjct: 456 MDSLALRFLQHS----------CISFEQVAGKGKKQLTFNQIDLEQAAPYAAEDADVTFR 505 Query: 171 IFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + +RL+ E L + I G +D +Q + + L+ Sbjct: 506 LHQRLQKSLDASDKLASIYRDIEMPLVPVLSRIERTGVLIDDMKLSAQSQEIALRLDALE 565 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQ 275 Q+ + + ++L+ LF + GL T +T + VL P + Sbjct: 566 QQAFDIAGQ-EFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPLPEK 624 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R ++ + L + +N T + TGR S QN+P + Sbjct: 625 ILEYR-GLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEE 683 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G K++ D + IE R++A ++G+ Sbjct: 684 GRR-------------------------IRQAFVAPHGYKIMAIDYSQIELRIMAHLSGD 718 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L+AF+ G+D++ T A V +QVT +QR K + Sbjct: 719 RALLEAFQQGKDIHAATAAEILGVDISQVTAEQRRRAKAVNF--------------GLIY 764 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + ++ + +++ Sbjct: 765 GMS------------------------------AFGLAKQLGIPRGEAQQYMDTYFERYP 794 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + + + + GR L ++ + Sbjct: 795 GVMQYMEDTRSIAAE--------------------------QGYVETIFGRRLHLPEIQS 828 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTV 628 + R +Q + DI+ + M+ +++ V Sbjct: 829 RNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDDWIQTEGQGRVKLLMQV 879 Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E +T + +LM +PL AE + + Sbjct: 880 HDELVFEVEETSLPEIESKIRNLMEQAAQ--LKVPLVAEAGHGENW 923 >gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 957 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 107/730 (14%), Positives = 215/730 (29%), Gaps = 190/730 (26%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53 + +D ET + ++ ++ +FG + H + Sbjct: 356 KLVAVDTETDNLDSMS----------ANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 405 Query: 54 --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 LK LEN DV + N ++ T+ Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH---G 462 Query: 88 IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + + T++ + + + + + G + I E Sbjct: 463 VQVAGVAFDTMLESYTLNSTGRHNMDELADRY--------LGHKTIEF----EEIAGKGK 510 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTIN 193 + A + +Y D VT ++ + L P E L + I Sbjct: 511 NQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIE 570 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +D + ++ ++L+Q + S V + ++L+ LF + GL + Sbjct: 571 RNGVLIDPEKLLAQSAEIEQRLSELEQLVHSEAG-EVFNLASTKQLQEILFTKLGLPVLK 629 Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T +T + VL ++ S+ + L +N T Sbjct: 630 KTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHTSY 689 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 + TGR S QN+P + +R I Sbjct: 690 HQAVTATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAFI 724 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 A++G K+V AD + IE R++A +A ++ + AF G+D++ T A F +A QVT +QR Sbjct: 725 ANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQR 784 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + L G++ ++ Sbjct: 785 RSAKAINFGLI--------------YGMSEFGLSNQ------------------------ 806 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 ++ + + Q++ V + ++ ++ Sbjct: 807 ------LGISRADAKKYMERYFQRYPAVQQFMTDIRESA--------------------- 839 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + GR L ++ ++ + + R +Q + DI Sbjct: 840 -----SKKGYVETLFGRRLYLPEIKSSNAMRR---KAAERVAINAP------MQGTAADI 885 Query: 610 LAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPL 663 + M+ KA +++ VHDE+V E + + ++ M +PL Sbjct: 886 IKVAMIGIDKAIRGDENIKMIMQVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVPL 943 Query: 664 KAEGYESKRY 673 AE + Sbjct: 944 IAEVGVGDNW 953 >gi|145636579|ref|ZP_01792246.1| DNA polymerase I [Haemophilus influenzae PittHH] gi|145270105|gb|EDK10041.1| DNA polymerase I [Haemophilus influenzae PittHH] Length = 930 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 101/705 (14%), Positives = 213/705 (30%), Gaps = 165/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51 + +D ET S ++ ++ +F ++ + Sbjct: 354 KLIAVDTETDSLDYIS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 +K LEN ++ + N F+ ++ +++ T++L+ + + Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 461 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G E IA E+ ++ EY D VT Sbjct: 462 DDLAKRY--------LGHETIAF----ESIAGKGKSQLTFNQIPLEQATEYAAEDADVTM 509 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L E L ++ + G +D + + T L Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTAL 569 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 +++ +L + ++L+ LF + GL +T + VL Sbjct: 570 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELAYSHELP- 627 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ S+ + L + +NS T + TGR S QN+P + Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA EG +V AD + IE R++A ++G Sbjct: 688 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 722 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF G+D++ +T A F V+ +VT +QR K + Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------GLI 768 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + + ++ + Q++ Sbjct: 769 YGMS------------------------------AFGLSRQLGISRPDAQKYMDLYFQRY 798 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + ++ + + + GR L D+ Sbjct: 799 PSVQQFMTDIREKAK--------------------------AQGYVETLFGRRLYLPDIN 832 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629 ++ + + R +Q + DI+ M+ + ++++ VH Sbjct: 833 SSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVH 883 Query: 630 DEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + F + M + +PL E + + Sbjct: 884 DELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 926 >gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976] gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976] Length = 957 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 108/731 (14%), Positives = 216/731 (29%), Gaps = 192/731 (26%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53 + +D ET S ++ ++ +FG + H + Sbjct: 356 KLVAVDTETDSLDSMS----------ANLVGISFGLANGEACYIPLTHKEQVTLEPQQSD 405 Query: 54 --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 LK LEN DV + N ++ T+ Sbjct: 406 LFAEPTEAETITSFELAKNQLNLTACVTELKPLLENADVKKIGQNIKYDLTIFANH---G 462 Query: 88 IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + + T++ + + + + E G + I E Sbjct: 463 VQVEGVAFDTMLESYTLNSTGRHNMDELAERY--------LGHKTIEF----EEIAGKGK 510 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQELWYLDQTIN 193 + A + +Y D VT ++ + L P E L + I Sbjct: 511 NQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPELDKAPTLVKLFNEIEMPLVEVLSRIE 570 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G ++ + ++ +L+Q + S V + ++L+ LF + GL + Sbjct: 571 RNGVLIEPEKLLAQSAEIEQRLAELEQLVHSEAG-EVFNLASTKQLQEILFTKLGLPVLK 629 Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTL 308 T +T + VL ++ S+ + L +N GR+ + Sbjct: 630 KTPKGAPSTNEEVLDELAGRGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY 689 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + TGR S QN+P + +R Sbjct: 690 HQAV-TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAF 723 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 I ++G K+V AD + IE R++A +A ++ + AF G+D++ T A F +A QVT +Q Sbjct: 724 ITNKGYKIVAADYSQIELRIMAHLANDEGMIIAFAEGKDIHRATAAEIFGLALDQVTSEQ 783 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + L G++ ++ Sbjct: 784 RRSAKAINFGLI--------------YGMSEFGLSNQ----------------------- 806 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 ++ + + Q++ V + ++ ++ Sbjct: 807 -------LGISRADAKKYMERYFQRYPAVQQFMTDIRESA-------------------- 839 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + GR L ++ ++ + + R +Q + D Sbjct: 840 ------SEKGYVETLFGRRLYLPEIKSSNAMRR---KAAERVAINAP------MQGTAAD 884 Query: 609 ILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLP 662 I+ M+ KA +++ VHDE+V E + + ++ M +P Sbjct: 885 IIKVAMIGIDKAIRGDENIKMIMQVHDELVFEVKEERVEHYSQLIKAEMEKAIQ--LKVP 942 Query: 663 LKAEGYESKRY 673 L AE + Sbjct: 943 LIAEVGVGDNW 953 >gi|261250089|ref|ZP_05942666.1| DNA polymerase I [Vibrio orientalis CIP 102891] gi|260939593|gb|EEX95578.1| DNA polymerase I [Vibrio orientalis CIP 102891] Length = 931 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 100/703 (14%), Positives = 200/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F ++ HD + Sbjct: 355 AFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPAQLERDWVL 404 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 + LK LE+ V N ++ +VL +++ + T++ + Sbjct: 405 EQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDS 462 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E + ++ Y D VT + Sbjct: 463 LALRFLQHS----------CISFEQIAGKGKKQLTFNQIELDEASPYAAEDADVTLRLHN 512 Query: 174 RLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL +++ L + I G +D +Q + +L+Q+ Sbjct: 513 RLMENIDQDEKLKAIYQEIEVPLVPVLSRIERTGVLIDDMKLGAQSQEIAQRLDELEQQA 572 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + GL T +T + VL P + Sbjct: 573 YEI-AEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKLILE 631 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N + T + TGR S QN+P + Sbjct: 632 YR-GLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 690 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA G K++ D + IE R++A ++G++ Sbjct: 691 -------------------------IRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKAL 725 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF+ G+D++ T A QV+ +QR K + G++ Sbjct: 726 LEAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNF--------------GLIYGMS 771 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 772 ------------------------------AFGLAKQLGIPRGEAQDYMNKYFERYPGVM 801 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + GR L ++ + Sbjct: 802 QYMEDTRSTA--------------------------SEQGYVETIYGRRLHLPEIQSRNG 835 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 836 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQTEGDGRVKLLMQVHDE 886 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S +PL AE + Sbjct: 887 LVFEVQESALTEIESKVQELMESAAE--LDVPLVAEAGHGDNW 927 >gi|157830862|pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna Polymerase I Complexed With DTMP gi|157831606|pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna Polymerase I Complexed With Deoxynucleoside Triphosphate And Pyrophosphate Length = 605 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 30 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 79 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 80 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 137 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 138 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 185 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 186 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 245 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 246 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 304 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 305 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 363 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 364 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 398 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 399 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 444 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 445 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 474 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 475 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 508 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 509 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 559 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 560 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601 >gi|154246319|ref|YP_001417277.1| DNA polymerase I [Xanthobacter autotrophicus Py2] gi|154160404|gb|ABS67620.1| DNA polymerase I [Xanthobacter autotrophicus Py2] Length = 1000 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 112/714 (15%), Positives = 205/714 (28%), Gaps = 174/714 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------------D 50 L D ET S + ++ + + H Sbjct: 413 LAFDTETNSLDPM----------QADLVGVSLALSPNEACYIPLAHTGAGDGLFSEGQLP 462 Query: 51 PVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 +P LK LE+ V HN +++ VL I + + CT+ ++ + Sbjct: 463 GQIPVRDAIAALKGVLEDKGTLKVGHNVKYDQLVLARH---GIDVAPFDCTMCMSYALDA 519 Query: 106 P---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 + + + G + IA + A Y Sbjct: 520 GKNGHGMDELS--------VLHLGHQPIAF----SEVTGKGKGKVTFDKVALEPATHYAA 567 Query: 163 GDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D VT +++ L+P + E+ L + + RG +D A+ L+ Sbjct: 568 EDADVTLRLWQVLKPRLAAEGRTTVYETLERPLIAVLARMESRGISIDKAMLARLSSEFA 627 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKK 268 +++ E+ L + +++ LF + GL T +T L + Sbjct: 628 QGAARIEDEIAELAG-ERLNVGSPKQMGDILFGKMGLPGGTKTATGMWSTKATALEELAE 686 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + Q + S+ + L +N R T L A+ TGR S QN Sbjct: 687 AGHKLPQKILEWRQLSKLRSTYTDALPNFVNPQTRRVHTSYALAATTTGRLSSSDPNLQN 746 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +P + +R +A EG LV AD + IE R+ Sbjct: 747 IPIRTEEGRR-------------------------IRRAFVAEEGNLLVSADYSQIELRL 781 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A AF G D++ T + FNV + + R K + Sbjct: 782 LAEIAEIPALRTAFTEGLDIHAMTASEMFNVPVKDMPAEVRRRAKAINF----------- 830 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 G++ A + + K Sbjct: 831 ---GIIYGIS------------------------------AFGLANQLGIPREEAGQYIK 857 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + ++ + + E + + + GR Sbjct: 858 RYFERFPGIRDYMEETKTFCRE--------------------------HGYVETLFGRRC 891 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGY 622 Y ++ + R Q + DI+ M+ K Sbjct: 892 HYPEIAAKNP---SIRAFNERAAINARL------QGTAADIIRRAMIRMEPALEKAKLSA 942 Query: 623 DIVLTVHDEIVCETPDTDEFN-ASMLYHLMTS--NPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E P+ + ++ M + P+ A +PLK + +K + Sbjct: 943 RMLLQVHDELVFEVPEGEADATIPVVRQCMETASAPAVALAVPLKVDARAAKNW 996 >gi|238921711|ref|YP_002935226.1| DNA polymerase I [Edwardsiella ictaluri 93-146] gi|238871280|gb|ACR70991.1| DNA polymerase I [Edwardsiella ictaluri 93-146] Length = 930 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 105/705 (14%), Positives = 207/705 (29%), Gaps = 168/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S L+ ++ + HD + Sbjct: 354 AFDTETDSLDVLS----------ANLVGISCADKPGQACYIPLAHDYLDAPHQLDRQYVL 403 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 L+ LE+ + + N ++ V+ + + T++ + + + Sbjct: 404 ARLQPLLEDEGIAKIGQNLKYDIGVMARY-GITLRGVA-FDTMLESYVLNSVAGRHDMDS 461 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L + E ++ EY D VT ++ Sbjct: 462 LSARH------------LDHKTITFEEIAGKGKGQLTFNQIPLEQASEYAAEDADVTLQL 509 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P+ + L + + G +D A+ +Q + V L+Q Sbjct: 510 HQHLWPMLEGESGPSHIFRDIDMPLVPVLSRMERTGVLIDSAILGQHSQELAVRLEALEQ 569 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + S + ++L++ LF + L + T +T + VL + QV Sbjct: 570 QAHSEAG-EPFNLSSTKQLQSILFEKQQLPVLKKTPGGAPSTNEEVLVELAEQGYALPQV 628 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 ++ + L +N GR+ + + TGR S QN+P S Sbjct: 629 ILEYRTLAKLKSTYTDKLPLMVNPLTGRVHTSYHQAV-TATGRLSSSDPNLQNIPVRSDE 687 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA G ++V AD + IE R++A ++G+ Sbjct: 688 GRR-------------------------IRQAFIAPVGSRIVAADYSQIELRIMAHLSGD 722 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L+AF G+D++ T A F + V+ DQR K + Sbjct: 723 KGLLQAFAAGKDIHRATAAEVFGLPLEAVSADQRRSAKAINF--------------GLIY 768 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + +R + +++ Sbjct: 769 GMS------------------------------AFGLARQLNIGRGEAQRYMDLYFERYP 798 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V Q + + GR L ++ Sbjct: 799 GVLAYMERTRQLA--------------------------SDQGYVETLDGRRLYLPEINA 832 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629 + R +Q + DI+ M+ + +++ VH Sbjct: 833 RNGMRR---KAAERAAINAP------MQGTAADIIKRAMIAVDGWLQETQLEVRMIMQVH 883 Query: 630 DEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E P++ + LM ++ S A +PLK + + + Sbjct: 884 DELVFEVPESQVEAVVCQVRVLMENSLSLA--VPLKVDIGCGENW 926 >gi|114798581|ref|YP_760129.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444] gi|114738755|gb|ABI76880.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444] Length = 929 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 111/711 (15%), Positives = 199/711 (27%), Gaps = 178/711 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51 + +D ET S ++ ++ + H Sbjct: 339 HVAVDTETDSLDSVS----------GGLVGVSLALAPGEACYIPLAHVDPEAKGDGDMFG 388 Query: 52 ----------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101 +VLK LE+ V + N ++ +V I +H T++++ Sbjct: 389 ADPPRQIKMAEALKVLKPMLEDPAVLKIGQNIKYDLSVFAQH---KIHVHPIDDTMLISF 445 Query: 102 SNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 + + + E G + I + K + A Sbjct: 446 ALNAGIHGHGMDDLSERY--------LGHKPITF----KDVAGTGKAQKSFAQVALDKAT 493 Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLN 208 EY D VT +++ L+P EQ L + + G VD + L+ Sbjct: 494 EYAAEDADVTLRLWQALKPRLRTEQVTAVYETLDRPLGPVLAEMEQAGVKVDRDMLSRLS 553 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLS 264 + L+ E + ++L LF E L T+T T VL Sbjct: 554 ADFNQRMAALEAEAHEQAG-RSFNIGSPKQLGEILFDEMNLPGGKKTKTGAWVTDGDVLE 612 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + + S+ L A+N T + ++TGR S Sbjct: 613 GLAADGHALPRTIVDWRMLSKLRSTYTEALQAAINKKTGRVHTSYMMAGAQTGRLSSTDP 672 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P + + +R IA EG LV AD + I Sbjct: 673 NLQNIPVRTEEGRK-------------------------IRQAFIAEEGNVLVSADYSQI 707 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA MA +AF+ G D++ T + F V + R K + Sbjct: 708 ELRILAHMADIPALKQAFKDGLDIHAMTASEMFGVPIEGMDPMVRRQAKAINF------- 760 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 G++ + Sbjct: 761 -------GIIYGIS------------------------------GFGLGRQLGIPSGEAN 783 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + K + ++ + + +E + T + Sbjct: 784 QYIKTYFERFPGIRQYMDETKEFARAT--------------------------GFVKTAF 817 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---- 620 GR + D+ + R+ +Q + DI+ M+ +A Sbjct: 818 GRKIHLPDIKSK----GPARSFAERQAINAP------IQGSAADIIKRAMIRMPEALAEA 867 Query: 621 --GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAE 666 ++L VHDE+V E P+ + ++ M + PS +PL E Sbjct: 868 GLKAQMLLQVHDELVFECPEKEAEKLIKLVQKTMAAADGPSLRLSVPLVVE 918 >gi|160872753|ref|ZP_02062885.1| DNA polymerase I [Rickettsiella grylli] gi|159121552|gb|EDP46890.1| DNA polymerase I [Rickettsiella grylli] Length = 898 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 111/706 (15%), Positives = 203/706 (28%), Gaps = 167/706 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54 D ET S ++ +F HD + Sbjct: 323 SFDTETTSLN----------VMQAELVGLSFAIGGEKPVYIPLAHDYPDAPQQLNRQWVL 372 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 Q LK E+ + H+ ++ +L + + + T++ + +L + Sbjct: 373 QQLKPLFEDPKQIKIGHHLKYDMNILA-HYGIQLRGID-FDTMLESYLLDSASNQHSLDS 430 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 LK K +E + K ++ + G Y D + + Sbjct: 431 AA--LKHLDHKTIRFEE----------IAGKGAKQKTFNQINLQDAGPYAAEDAAIALRL 478 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L+P E L + + G +D L ++ + L+Q Sbjct: 479 HETLKPQLDNVVGLSTVYTEIEMPLVTVLARMERHGVLIDAPLLKKQSRSIAKRLLTLEQ 538 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+T LF + GL +T + VL + P + Sbjct: 539 QAFQLAG-KPFNLGSPKQLQTILFDDHGLPILEKTPKGQASTSENVLQALALTFPLPKII 597 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R S+ + L E +N T A TGR S QN+P + Sbjct: 598 LKHRR-LSKLKSTYTDKLPEQINPKTGRVHTSYHQAAVVTGRLSSSDPNLQNIPARTHEG 656 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + +R IA G ++ AD + IE R++A + ++ Sbjct: 657 RK-------------------------IRQAFIAPPGYFILAADYSQIELRIIAHFSQDK 691 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 LKAF G D++ T A N+ +VT +QR K + G Sbjct: 692 GLLKAFAQGLDIHQATAAEVLNIPLERVTHEQRRSAKAIN--------------FGLMYG 737 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + + + + ++ Sbjct: 738 MS------------------------------AFGLARQLGISREDAKNYIERYFDRYPG 767 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + Q + + GR L + +N Sbjct: 768 VKRYMERIRQRAHEQR--------------------------YVTTLFGRRLNLAFINSN 801 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630 S R R Q + DI+ + M+ K +++ VHD Sbjct: 802 DSLQR---RASERAAINAPL------QGSAADIIKKAMIRIDAELIKKKLDAHMIMQVHD 852 Query: 631 EIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYRK 675 E+V E + D A L LM + +PL + + K Sbjct: 853 ELVFEIAEHDLQRAKRLIENLMVHTTT--LSVPLVVDIQIGSNWNK 896 >gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222] gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222] Length = 933 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 104/703 (14%), Positives = 205/703 (29%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F D+ HD + Sbjct: 357 AFDTETDSLDYMV----------ANLVGLSFATDEGVAAYVPVAHDYLDAPQQLDRDWVL 406 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 + LK LE+ V N ++ +VL +++ + T++ + Sbjct: 407 EQLKPILEDDAQAKVGQNLKYDMSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMDS 464 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E + ++ Y D VT + Sbjct: 465 LALRFLQHS----------CISFEQIAGKGKKQLTFNQIELGEASPYAAEDADVTLRLHN 514 Query: 174 RLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL +++ L + I G +D L +Q + V +L+Q+ Sbjct: 515 RLMENIEQDEKLKTIYEEIEVPLIPVMSRIERTGVFIDDMLLGAQSQEIAVRLDELEQKA 574 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + GL + T + T + VL P + Sbjct: 575 YEI-AEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPLPKLIIE 633 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N++ T + TGR S QN+P + Sbjct: 634 YR-GLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 692 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G++ Sbjct: 693 -------------------------IRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKAL 727 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF+ G+D++ T A V VT +QR K + G++ Sbjct: 728 LEAFQQGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNF--------------GLIYGMS 773 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 774 ------------------------------AFGLAKQLGIPRGEAQHYMDTYFERYPGVM 803 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + A + GR L ++ + Sbjct: 804 QYMEDTRSAA--------------------------SEQGFVETIYGRRLHLPEIQSRNG 837 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 838 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDE 888 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S +PL AE + Sbjct: 889 LVFEVEESALAEIESKVQELMESAAE--LEVPLVAEAGHGDNW 929 >gi|284009008|emb|CBA75937.1| DNA polymerase I [Arsenophonus nasoniae] Length = 936 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 103/705 (14%), Positives = 205/705 (29%), Gaps = 161/705 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 D ET S L+ +I +F + H+ Sbjct: 356 KCFAFDTETDSLDTLS----------AHLIGLSFAIEKGKGAYLPLGHNYLDAPQQLPLD 405 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALK 110 + +K L + ++ + N F+ V+ DI + T++ + + L Sbjct: 406 EVLAAIKPILVDKNIQKIGQNLKFDYGVMANY---DIELKNMAFDTMLESYVLNSVAGLG 462 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + + + L + E ++ Y D VT Sbjct: 463 ------RHDMDSLAQRH-LNHKTITFEEIAGKGKNQLTFNQIPLEQASTYAAEDADVTLL 515 Query: 171 IFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L P E L + + G +D ++ + +++ Sbjct: 516 LHQTLWPQLESEPKLKGIFQQIEMPLVPVLARMERVGVLIDANKLAKQSREIASRLMEIE 575 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQ 275 +E ++ + ++L+ LF + L + T + T + VL Sbjct: 576 KEAYAI-AEQEFNLASPKQLQAILFEKLQLPVVKKTPSGAPSTNEEVLEELAFSHELPKI 634 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +R S+ + L ++ + T + TGR S QN+P + Sbjct: 635 ILQHR-SLSKLKSTYTDKLPMMIHPKTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRTEE 693 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA EG K+V AD + IE R++A ++ + Sbjct: 694 GRR-------------------------IRQAFIAREGYKIVAADYSQIELRIMAHLSQD 728 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF G+D++ T A F V VT +QR K + Sbjct: 729 KGLLDAFAEGQDIHRATAAEVFGVLLTDVTNEQRRSAKAINF--------------GLIY 774 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + + + + +++ Sbjct: 775 GMS------------------------------AFGLSRQLGITRGQAQHYMDRYFERYP 804 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + +Q E G GR L D+ + Sbjct: 805 GVLSYM---ERTRKQAAEQGYVETLA-----------------------GRRLYLPDINS 838 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629 + + RE +Q + DI+ + M+ K +++ VH Sbjct: 839 RNAMRR---KASEREAINAP------MQGTAADIIKKAMIALDKWIESVKPDLYMLMQVH 889 Query: 630 DEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E ++ + + LM + +PLK + + Sbjct: 890 DELVFEVKESAVDRSQQKIRQLMEQSMQ--LTVPLKVDVGIGDNW 932 >gi|170730324|ref|YP_001775757.1| phage-related DNA polymerase [Xylella fastidiosa M12] gi|167965117|gb|ACA12127.1| phage-related DNA polymerase [Xylella fastidiosa M12] Length = 726 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 275/726 (37%), Positives = 370/726 (50%), Gaps = 63/726 (8%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L+ D ET SP+ + G+ YAE ++LFA+ + PV++WDC MP+ L AL Sbjct: 10 ILWGDLETYSPVPIAH-GVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALH 68 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121 N V + HNS+F+RTVL +DIP+ RW ++ A ++ LP AL + E L++ + Sbjct: 69 NPAVLLYFHNSHFDRTVL-RHCGIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQ 127 Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++GK L+A FCK C R + H W F EY + DV R++ KRL + Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTDWAQFVEYARRDVAAMRDVVKRLPSHN 187 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 EL W+LDQTINDRG VD LA V+ + L E+LT G V ++ + Sbjct: 188 YSGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKCTLAHRTEALTGGAVQAATQRD 247 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L L E G+ L D+ + T +R L + L ++ + R +AS ++ K L+ Sbjct: 248 ALLHHLSTEHGVALPDMQQHTVERCL-DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S + I + D Sbjct: 307 TSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDD 366 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF------------- 402 + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTW 426 Query: 403 ---------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 G+D+Y YA SF +AP VTK+QR IGKV Sbjct: 427 HSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQ 486 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 ELALGY GG AF A+ ++L A P ++A +W + N Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL--PPLLLQEAVEALQWTKANQRPTFGL 544 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 AC+ K+AWR H ++ W L A I + + + ++ + Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWQALQFAATDAIGHPETA-----HTCCGITVQYSR 599 Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDI 609 L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+ Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669 LA M AGY IVLTVHDE++ E D FNA+ L LM + P WA+GLPL AEG++ Sbjct: 660 LAACMPAIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQ 719 Query: 670 SKRYRK 675 + RYRK Sbjct: 720 THRYRK 725 >gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145] gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145] Length = 920 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 110/705 (15%), Positives = 198/705 (28%), Gaps = 167/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 D ET S ++ F+ FD HD Sbjct: 346 KRFAFDTETTSLD----------YRIAQIVGFSVAFDAQNAYYVPLAHDYEGAPEQLNRE 395 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 V+ +K LE+ V + H+ ++ VL+ + + + T++ + Sbjct: 396 VILAQIKPILEDESVKKIGHHLKYDAHVLENH-GIHLA-GWYFDTMLASYVLNSVATRHG 453 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V L E + K ++ Y D VT Sbjct: 454 MDDVARLY------------LSHLTTTYEQVAGKGAKQKTFNQIPLETAAHYAAEDAHVT 501 Query: 169 REIFKRLEPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 +++ L EL + + + G +D+A L Sbjct: 502 YRLYEVLSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLGGEFSNTMQN 561 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273 L+ ++ + + +++ LF + GL T +T + VL P A Sbjct: 562 LENQIMEIAG-ESFNVSSPKQVGEVLFEKLGLKGGKKTTTGQYSTSESVLEKI--EHPIA 618 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + R S+ + L + N D T + TGR S QN+P + Sbjct: 619 QLILEYR-GLSKLKSTYTDGLCKQANPDTHRVHTSYHQALTATGRLSSTDPNLQNIPIRA 677 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A EG+ L+ AD + IE R++A ++ Sbjct: 678 EIGR-------------------------QIRKAFVAPEGRVLLAADYSQIELRLMAHLS 712 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ L AF G+D++ T A +A VT DQR K + Sbjct: 713 QDEALLDAFIHGQDVHRRTAAEVLGIALEDVTNDQRRQAKAVN--------------FGL 758 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ F + K + + Sbjct: 759 LYGMSEFGLIRQ------------------------------LGFTRQESQDYIKQYFHR 788 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + + Q + + GR L D+ Sbjct: 789 YPGIYDYMQRTRQVALE--------------------------QGFVETLLGRRLYTPDI 822 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVH 629 + + R Q + DI+ M+ K ++L VH Sbjct: 823 DARNMMVR---KAAERAAINAPL------QGSAADIIKMAMIEVDKMLPKDQAKMLLQVH 873 Query: 630 DEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + + L +M S +PL E + K + Sbjct: 874 DELVFEVDEDIADELAPKLAEVMQSVLQ--ISVPLVVEVGKGKNW 916 >gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 957 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 108/731 (14%), Positives = 216/731 (29%), Gaps = 192/731 (26%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53 + +D ET + ++ ++ +FG + H + Sbjct: 356 KLVAVDTETDNLDSMS----------ANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 405 Query: 54 --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 LK LEN DV + N ++ T+ Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH---G 462 Query: 88 IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + + T++ + + + + + G + I E Sbjct: 463 VQVAGVAFDTMLESYTLNSTGRHNMDELADRY--------LGHKTIEF----EEIAGKGK 510 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQELWYLDQTIN 193 + A + +Y D VT ++ + L P E L + I Sbjct: 511 NQLTFDKIAIDVASKYAAEDADVTMKLHQVLTPELDKTPTLVKLFNEIEMPLVEVLSRIE 570 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +D + ++ +L+Q + S V + ++L+ LF + GL + Sbjct: 571 RNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAG-EVFNLASTKQLQEILFTKLGLPVLK 629 Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTL 308 T +T + VL ++ S+ + L +N GR+ + Sbjct: 630 KTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY 689 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + TGR S QN+P + +R Sbjct: 690 HQAV-TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAF 723 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA +G K+V AD + IE R++A +A ++ + AF G+D++ T A F +A QVT +Q Sbjct: 724 IARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQ 783 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + L G++ ++ Sbjct: 784 RRSAKAINFGLI--------------YGMSEFGLSNQ----------------------- 806 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 ++ + + Q++ V + ++ ++ Sbjct: 807 -------LGISRADAKKYMERYFQRYPAVQQFMTDIRESA-------------------- 839 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + GR L ++ ++ + + R +Q + D Sbjct: 840 ------SEKGYVETLFGRRLYLPEIKSSNAMRR---KAAERVAINAP------MQGTAAD 884 Query: 609 ILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLP 662 I+ M+ KA +++ VHDE+V E + + ++ M +P Sbjct: 885 IIKVAMIGIDKAIRGDENIKMIMQVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVP 942 Query: 663 LKAEGYESKRY 673 L AE + Sbjct: 943 LIAEVGVGDNW 953 >gi|170769667|ref|ZP_02904120.1| DNA polymerase I [Escherichia albertii TW07627] gi|170121475|gb|EDS90406.1| DNA polymerase I [Escherichia albertii TW07627] Length = 928 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 208/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD + Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPEQISRERVL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L ++++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-DIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPELQKHKGPLNVFENIEMPLVPVISRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA + +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPQDHVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630 + + +Q + DI+ M+ K +++ VHD Sbjct: 832 NAARRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEKPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDLDVVAKKIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 957 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 107/731 (14%), Positives = 217/731 (29%), Gaps = 192/731 (26%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53 + +D ET + ++ ++ +FG + H + Sbjct: 356 KLVAVDTETDNLDSMS----------ANLVGISFGLANGEACYIPLTHKEQVTLEPQQSD 405 Query: 54 --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 LK LE+ DV + N ++ T+ Sbjct: 406 LFAEPAEVETTTSFELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANH---G 462 Query: 88 IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + + T++ + + + + + G + I E Sbjct: 463 VQVEGVAFDTMLESYTLNSTGRHNMDELADRY--------LGHKTIEF----EEIAGKGK 510 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTIN 193 + A + +Y D VT ++ + L P E L + I Sbjct: 511 NQLTFDKIAIDIASQYAAEDADVTMKLHQVLSPELEKAPTLVKLFNEIEMPLVEVLSRIE 570 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +D + ++ ++L+Q + S V + ++L+ LF + GL + Sbjct: 571 RNGVLIDPEKLLAQSVEIEQRLSELEQLVHSEAG-EVFNLASTKQLQEILFTKLGLPVLK 629 Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTL 308 T +T + VL ++ S+ + L +N GR+ + Sbjct: 630 KTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY 689 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + TGR S QN+P + +R Sbjct: 690 HQAV-TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAF 723 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA +G K+V AD + IE R++A +A ++ + AF G+D++ T A F +A QVT +Q Sbjct: 724 IARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQ 783 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + L G++ ++ Sbjct: 784 RRSAKAINFGLI--------------YGMSEFGLSNQ----------------------- 806 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 ++ + + Q++ V + ++ ++ Sbjct: 807 -------LGISRADAKKYMERYFQRYPAVQQFMTDIRESA-------------------- 839 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + GR L ++ ++ + + R +Q + D Sbjct: 840 ------SEKGYVETLFGRRLYLPEIKSSNAMRR---KAAERVAINAP------MQGTAAD 884 Query: 609 ILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLP 662 I+ M+ KA +++ VHDE+V E + + ++ M +P Sbjct: 885 IIKVAMIGIDKAIRGDDNIKMIMQVHDELVFEVKEELIEHYSQLIKAEMEKAIQ--LKVP 942 Query: 663 LKAEGYESKRY 673 L AE + Sbjct: 943 LIAEVGVGDNW 953 >gi|312971852|ref|ZP_07786026.1| DNA polymerase I domain protein [Escherichia coli 1827-70] gi|2982102|pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|2982104|pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|2982108|pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|3891304|pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Manganese gi|3891306|pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc Only gi|4558217|pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And Manganese gi|4558219|pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only gi|5542481|pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate And Europium (Iii) Ion gi|6730280|pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Short Dna Fragment Carrying 2'-0- Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3' gi|6730282|pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Dna Tetramer Carrying 2'-O-(3-Aminopropyl)- Rna Modification 5'-D(Tt)-Ap(U)-D(T)-3' gi|310334229|gb|EFQ00434.1| DNA polymerase I domain protein [Escherichia coli 1827-70] gi|315618773|gb|EFU99357.1| DNA polymerase I domain protein [Escherichia coli 3431] gi|323167488|gb|EFZ53195.1| DNA polymerase I domain protein [Shigella sonnei 53G] gi|323177872|gb|EFZ63456.1| DNA polymerase I domain protein [Escherichia coli 1180] gi|323182379|gb|EFZ67786.1| DNA polymerase I domain protein [Escherichia coli 1357] gi|332085134|gb|EGI90312.1| DNA polymerase I domain protein [Shigella dysenteriae 155-74] Length = 605 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 30 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 79 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 80 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 137 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 138 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 185 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 186 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 245 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 246 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 304 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 305 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 363 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 364 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 398 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 399 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 444 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 445 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 474 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 475 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 508 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 509 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 559 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 560 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601 >gi|71899884|ref|ZP_00682032.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71730324|gb|EAO32407.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 272/726 (37%), Positives = 365/726 (50%), Gaps = 63/726 (8%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L+ D ET SP+ + G+ YAE ++LFA+ D PV++WDC MP+ L AL Sbjct: 10 ILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALH 68 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121 N V + HNS+F+RTVL ++IP+ RW ++ A ++ LP AL + E L++ + Sbjct: 69 NPAVLLYFHNSHFDRTVL-RHCGINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQ 127 Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++GK L+A FCK C R + H W F +Y + DVT R++ KRL + Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSHN 187 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 EL W+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L L E G+ L D+ + T +R L + L ++ + R +AS ++ K L+ Sbjct: 248 ALLHHLSTEHGVALPDMQQHTVERCL-DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 + DGRLRGTLQF GASRTGRW+G + P NLPRP+ S + I + D Sbjct: 307 TSGDGRLRGTLQFNGASRTGRWAGRLLQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDD 366 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL------- 408 + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF + Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTW 426 Query: 409 ---------------------------------YVTTYARSFNVAPAQVTKDQRAIGKVM 435 Y YA SF +AP VTK QR IGKV Sbjct: 427 HSGEAITHGALRGAPITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQ 486 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 ELALGY GG AF A+ ++L A P + A +W + N Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL--PPLLLQQAMEALQWTKANQRPTFGL 544 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 AC+ K+AWR H ++ W L A I + + + ++ + Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599 Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDI 609 L + LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+ Sbjct: 600 AWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669 LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG+E Sbjct: 660 LAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFE 719 Query: 670 SKRYRK 675 + RYRK Sbjct: 720 THRYRK 725 >gi|313647099|gb|EFS11554.1| DNA polymerase I domain protein [Shigella flexneri 2a str. 2457T] gi|332997589|gb|EGK17204.1| DNA polymerase I domain protein [Shigella flexneri VA-6] Length = 605 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 30 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERAL 79 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 80 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 137 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 138 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 185 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 186 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 245 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 246 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 304 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 305 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 363 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 364 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 398 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 399 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 444 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 445 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 474 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 475 VLEYMERTRAQAKE--------------------------LGYVETLDGRRLYLPDIKSS 508 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 509 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 559 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 560 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601 >gi|333014001|gb|EGK33362.1| DNA polymerase I domain protein [Shigella flexneri K-227] Length = 605 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 30 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERAL 79 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 80 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 137 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 138 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 185 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 186 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 245 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 246 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 304 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 305 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 363 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 364 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 398 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 399 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 444 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 445 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 474 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 475 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 508 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 509 NGARRAAAER---------TAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 559 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 560 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601 >gi|170739017|ref|YP_001767672.1| DNA polymerase I [Methylobacterium sp. 4-46] gi|168193291|gb|ACA15238.1| DNA polymerase I [Methylobacterium sp. 4-46] Length = 1016 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 105/711 (14%), Positives = 194/711 (27%), Gaps = 173/711 (24%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---------------- 50 D ET + A ++ + H Sbjct: 433 DTETNALD----------AHRADLVGVSLATAPGRAAYIPLAHRGSEDLFGEGLLPDQLP 482 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106 + LK LE+ V V N ++ VL ++I + T++++ Sbjct: 483 WDAVRARLKPLLEDPAVLKVGQNVKYDWLVLVRH-GIEIQP--YDDTMLISYVLDAGKGS 539 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + + G + I R Y D Sbjct: 540 HGMDELARRH--------LGHQPITF----ADVTGTGRAKVTFDRVPLDKATAYAAEDAD 587 Query: 167 VTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 VT +++ ++P + E L + + G VD + L+ Sbjct: 588 VTLRLWRLMKPRLAAEHRATVYETLERPLVPVLARMEREGIRVDRDMLSRLSGDFSQSLA 647 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQ 272 +L+ E++ + S +++ LF + GL T + T +L Sbjct: 648 RLEAEIQEMAG-ETFSVSSPKQIGDILFGKLGLPGAKKTPSGQWATPATLLEELATQGHP 706 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + + S+ ++L E + T L A+ TGR S QN+P Sbjct: 707 LPRKILEWRQLSKLKSTYTDSLQEHAERESDRVHTSFALAATTTGRLSSSDPNLQNIPIR 766 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +R +A G +L+ AD + IE R+LA M Sbjct: 767 TEEGRR-------------------------IRQAFVADAGHQLISADYSQIELRLLAHM 801 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 A +AF G D++ T + F V ++T D R K + Sbjct: 802 ADIPQLRQAFADGLDIHAATASAMFGVPLGEMTPDLRRRAKTINF--------------G 847 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ A K + + Sbjct: 848 IIYGIS------------------------------AFGLADRLGIPQGEASAFIKQYFE 877 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + + + G GR Y Sbjct: 878 RFPGIRAY---IEDTKKACRDKGYVTTL-----------------------FGRVCHYPQ 911 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVL 626 + +N + R+ +Q + DI+ M+ A ++L Sbjct: 912 IRSNNP---QERASVERQAINAP------IQGTAADIIRRAMVRMEGALAGAGLTTRMLL 962 Query: 627 TVHDEIVCETPDTDEF-NASMLYHLMTSNPSWA--KGLPLKAEGYESKRYR 674 VHDE+V E P + ++ +M P A +PL E + ++ Sbjct: 963 QVHDELVFEAPQDEVARALPIIARVMEEAPQPAVRLTVPLAVEAKAAANWQ 1013 >gi|190149819|ref|YP_001968344.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 957 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 107/730 (14%), Positives = 215/730 (29%), Gaps = 190/730 (26%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53 + +D ET + ++ ++ +FG + +H + Sbjct: 356 KLVAVDTETDNLDSMS----------ANLVGVSFGLANGDACYIPLMHKEQVTLEPQQSD 405 Query: 54 --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 LK LEN DV + N ++ T+ Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH---G 462 Query: 88 IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + + T++ + + + + + G + I E Sbjct: 463 VQVAGVAFDTMLESYTLNSTGRHNMDELADRY--------LGHKTIEF----EEIAGKGK 510 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTIN 193 + A + +Y D VT ++ + L P E L + I Sbjct: 511 NQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIE 570 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +D + ++ +L+Q + S V + ++L+ LF + GL + Sbjct: 571 RNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAG-EVFNLASTKQLQEILFTKLGLPVLK 629 Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T +T + VL ++ S+ + L +N T Sbjct: 630 KTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHTSY 689 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 + TGR S QN+P + +R I Sbjct: 690 HQAVTATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAFI 724 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 A++G K+V AD + IE R++A +A ++ + AF G+D++ T A F +A QVT +QR Sbjct: 725 ANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQR 784 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + L G++ ++ Sbjct: 785 RSAKAINFGLI--------------YGMSEFGLSNQ------------------------ 806 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 ++ + + Q++ V + ++ ++ Sbjct: 807 ------LGISRADAKKYMERYFQRYPAVQQFMTDIRESA--------------------- 839 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + GR L ++ ++ + + R +Q + DI Sbjct: 840 -----SKKGYVETLFGRRLYLPEIKSSNAMRR---KAAERVAINAP------MQGTAADI 885 Query: 610 LAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPL 663 + M+ KA +++ VHDE+V E + + ++ M +PL Sbjct: 886 IKVAMIGIDKAIRGDENIKMIMQVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVPL 943 Query: 664 KAEGYESKRY 673 AE + Sbjct: 944 IAEVGVGDNW 953 >gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449] gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449] Length = 918 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 112/706 (15%), Positives = 212/706 (30%), Gaps = 170/706 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54 D ET S Y E ++ +F + HD V+ Sbjct: 342 AFDTETTSLD---------YME-ARIVGVSFAVEAGKAAYVPFGHDYLGAPVQLTEAVVL 391 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111 LK LE+ V N ++R VL ++D+ + T++ + ++ + + Sbjct: 392 GKLKPLLEDPTRLKVGQNLKYDRNVLLNH-DIDLQGIAY-DTMLESYVLNSTASRHDMDS 449 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + L E + ++ Y D +T + Sbjct: 450 LAKRY------------LGVETTSFEDIAGKGVKQLTFNQIELEQAAPYAAEDADITLRL 497 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E L + + G +D L H +Q +++ +L++ Sbjct: 498 HQTLWGQLEAVPGLCQVFSEIELPLLPVLARMELLGTTIDPKLLHQQSQEIELRLAELER 557 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L LF + GL + T +T + VL+ + ++ Sbjct: 558 QAHELAGQ-EFNLSSPKQLGEILFTKLGLPIIKKTPKGAPSTAEEVLAELAETYELP-RL 615 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 ++ + L + GR+ + A+ TGR S QN+P + Sbjct: 616 LMEHRTLAKLKSTYTDKLPLMIKPQTGRVHTSYHQAVAA-TGRLSSSDPNLQNIPVRNEQ 674 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R I S G KLV AD + IE R++A ++G+ Sbjct: 675 GRR-------------------------IRQAFIPSAGYKLVAADYSQIELRIMAHLSGD 709 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF G+D++ T A F VA VT D R K + Sbjct: 710 KGLLTAFAEGKDIHKATAAEVFGVALDAVTTDMRRSAKAINF--------------GLIY 755 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + ++ + +++ Sbjct: 756 GMS------------------------------AFGLAKQLGIGRAEAQKYMDLYFERYP 785 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V E Q E + GR L D+ + Sbjct: 786 GVLEYMERTRQQAE--------------------------AQGYVETLFGRRLYLPDIKS 819 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN-------ATKAGYDIVLTV 628 + L + R +Q + DI+ M+N +++ V Sbjct: 820 RNAGLR---KGAERAAINAP------MQGTAADIIKRAMINVDGWIRGIEDESIRMLMQV 870 Query: 629 HDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E + +++ M++ +PL E + Sbjct: 871 HDELVFEIREEKLEEYTAIIKEKMSAAAE--LHVPLLVEAGTGDNW 914 >gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3] gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3] Length = 932 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 104/703 (14%), Positives = 205/703 (29%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F ++ HD + Sbjct: 356 AFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWVL 405 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 + LK LE+ V N ++ +VL +++ + T++ + Sbjct: 406 EQLKPILEDDAQAKVGQNLKYDMSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMDS 463 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E + ++ Y D VT + Sbjct: 464 LALRFLQHS----------CISFEQIAGKGKKQLTFNQIELGEASPYAAEDADVTLRLHN 513 Query: 174 RLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL +++ L + I G VD L +Q + V +L+Q+ Sbjct: 514 RLMENIEQDEKLKAIYEEIEVPLIPVMSRIERTGVFVDDMLLGAQSQEIAVRLDELEQKA 573 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + GL + T + T + VL P + Sbjct: 574 YEI-AEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGSPSTNEEVLQELALDYPLPKLIIE 632 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N++ T + TGR S QN+P + Sbjct: 633 YR-GLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 691 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G++ Sbjct: 692 -------------------------IRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKAL 726 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF+ G+D++ T A V VT +QR K + G++ Sbjct: 727 LEAFQQGKDIHAATAAEIIGVNIEDVTSEQRRRAKAVNF--------------GLIYGMS 772 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 773 ------------------------------AFGLAKQLGIPRGEAQHYMDTYFERYPGVM 802 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + A + GR L ++ + Sbjct: 803 QYMEDTRSAA--------------------------SEQGFVETIYGRRLHLPEIQSRNG 836 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 837 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDE 887 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S +PL AE + Sbjct: 888 LVFEVEESSLAEIESKVQELMESAAE--LEVPLVAEAGHGDNW 928 >gi|325274003|ref|ZP_08140161.1| DNA polymerase I [Pseudomonas sp. TJI-51] gi|324100856|gb|EGB98544.1| DNA polymerase I [Pseudomonas sp. TJI-51] Length = 915 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 108/701 (15%), Positives = 191/701 (27%), Gaps = 158/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET A+ ++ +F H HD + Sbjct: 337 AFDTETTGLD----------AQKAQLVGLSFAVAPHEAAYVPLAHDYEGAPAQLDRDAVL 386 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ V N+ ++ +L T++ + + Sbjct: 387 LALKPLLEDPAKAKVGQNAKYDINILANGSPAIAMRGVAYDTMLESYVLNSTAT------ 440 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + + K L E + ++ G Y D +T + Sbjct: 441 --RHDMDSLAQ-KYLDHTTIAFEDIAGKGAKQLTFNQIDLDKAGPYAAEDADITLRLHHA 497 Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223 L+ ++ L + I G VD AL H + + + +L++ Sbjct: 498 LQARLAQTPSLQPVLMDIEMPLVPVLAKIERQGALVDAALLHVQSGELGEKMAELERRAY 557 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNN 279 L + ++L L+ + G+ + T +T + VL +L +V Sbjct: 558 ELAG-EEFNLGSPKQLGAILYDKLGMPVLSKTAKGQPSTAEAVLDELAELGYPLPEVLMQ 616 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 S+ + L +N T + TGR S QN+P + Sbjct: 617 YRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAEGRR- 675 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IAS G KL+ AD + IE R++A +A ++ L Sbjct: 676 ------------------------IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLL 711 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF D++ T A F VA VT DQR K + G++ Sbjct: 712 HAFRNDLDVHRATAAEVFGVALENVTVDQRRKAKAIN--------------FGLIYGMSA 757 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + ++ V Sbjct: 758 FGLAKQI------------------------------GVDRKQSQDYIDRYFARYPGVLA 787 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + GR L D+ Sbjct: 788 YMERTRTQAAE--------------------------QGFVETLFGRRLYLPDINAKNPA 821 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633 L + R +Q + DI+ M+N ++L VHDE+V Sbjct: 822 LR---KGAERTAINAP------MQGTAADIIKRAMVNVDNWLSESGLDARVILQVHDELV 872 Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + + M+ +PL E + Sbjct: 873 LEVREDLVEQVKDEIRQHMSKAAQ--LDVPLLVEAGIGANW 911 >gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32] gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32] Length = 933 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 103/703 (14%), Positives = 205/703 (29%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F ++ HD + Sbjct: 357 AFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWVL 406 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 + LK LE+ V N ++ +VL +++ + T++ + Sbjct: 407 EQLKPILEDDAQAKVGQNLKYDMSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMDS 464 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E + ++ Y D VT + Sbjct: 465 LALRFLQHS----------CISFEQIAGKGKKQLTFNQIELGEASPYAAEDADVTLRLHN 514 Query: 174 RLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL +++ L + I G +D L +Q + V +L+Q+ Sbjct: 515 RLMENIEQDEKLKTIYGEIEVPLIPVMSRIERTGVFIDDMLLGAQSQEIAVRLDELEQKA 574 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + GL + T + T + VL P + Sbjct: 575 YEI-AEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPLPKLIIE 633 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N++ T + TGR S QN+P + Sbjct: 634 YR-GLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 692 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G++ Sbjct: 693 -------------------------IRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKAL 727 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF+ G+D++ T A V VT +QR K + G++ Sbjct: 728 LEAFQQGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNF--------------GLIYGMS 773 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 774 ------------------------------AFGLAKQLGIPRGEAQHYMDTYFERYPGVM 803 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + A + GR L ++ + Sbjct: 804 QYMEDTRSAA--------------------------SEQGFVETIYGRRLHLPEIQSRNG 837 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 838 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDE 888 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S +PL AE + Sbjct: 889 LVFEVEESALAEIESKVQELMESAAE--LEVPLVAEAGHGDNW 929 >gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 957 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 106/730 (14%), Positives = 214/730 (29%), Gaps = 190/730 (26%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53 + +D ET + ++ ++ +FG + H + Sbjct: 356 KLVAVDTETDNLDSMS----------ANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 405 Query: 54 --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 LK LE+ DV + N ++ T+ Sbjct: 406 LFAEPAEAETTTSFELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANH---G 462 Query: 88 IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + + T++ + + + + + G + I E Sbjct: 463 VQVEGVAFDTMLESYTLNSTGRHNMDELADRY--------LGHKTIEF----EEIAGKGK 510 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTIN 193 + A + +Y D VT ++ + L P E L + I Sbjct: 511 NQLTFDKIAIDIASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIE 570 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +D + ++ +L+Q + S V + ++L+ LF + GL + Sbjct: 571 RNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAG-EVFNLASTKQLQEILFTKLGLPVLK 629 Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T +T + VL ++ S+ + L +N T Sbjct: 630 KTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHTSY 689 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 + TGR S QN+P + +R I Sbjct: 690 HQAVTATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAFI 724 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 A++G K+V AD + IE R++A +A ++ + AF G+D++ T A F +A QVT +QR Sbjct: 725 ANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQR 784 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + L G++ ++ Sbjct: 785 RSAKAINFGLI--------------YGMSEFGLSNQ------------------------ 806 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 ++ + + Q++ V + ++ ++ Sbjct: 807 ------LGISRADAKKYMERYFQRYPAVQQFMTDIRESA--------------------- 839 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + GR L ++ ++ + + R +Q + DI Sbjct: 840 -----SKKGYVETLFGRRLYLPEIKSSNAMRR---KAAERVAINAP------MQGTAADI 885 Query: 610 LAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPL 663 + M+ KA +++ VHDE+V E + + ++ M +PL Sbjct: 886 IKVAMIGIDKAIRGDENIKMIMQVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVPL 943 Query: 664 KAEGYESKRY 673 AE + Sbjct: 944 IAEVGVGDNW 953 >gi|312958179|ref|ZP_07772702.1| DNA polymerase A [Pseudomonas fluorescens WH6] gi|311287610|gb|EFQ66168.1| DNA polymerase A [Pseudomonas fluorescens WH6] Length = 931 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 103/712 (14%), Positives = 199/712 (27%), Gaps = 168/712 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 D ET A ++ +F H H Sbjct: 344 KLFAFDTETT----------GIDAHQAQLVGVSFAVQPHEAAYIPLTHAYIGVPDQLDRD 393 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWICTLVLARSNG 104 + + LK LE+ + ++ F+ +L C + + T++ + Sbjct: 394 TVLRALKPLLEDPTKLKIGQHAKFDMNILANCAIDGDPAQGITVQGIA-FDTMLESYVLN 452 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 A + + + K L + + + A G Y D Sbjct: 453 --------ATATRHDMDSLAK-KYLDYDTVSFQDIAGKGAKQLTFDQIALEQAGPYAAED 503 Query: 165 VTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 VT + + L E L + I +G VD L + + Sbjct: 504 ADVTLRLHQELHAQLAAIPSLASVLTDIEMPLVPVLARIERQGALVDAQLLGVQSIELGN 563 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKL 269 + +L+++ + + ++L L+ + G+ + T +T + VL+ + Sbjct: 564 KMVELERQAFEIAG-EAFNLGSPKQLGAILYEKLGMPVLKKTGKGQASTAEDVLAKLAED 622 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQN 328 +V S+ + L E +N GR+ + A+ TGR S QN Sbjct: 623 DYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAA-TGRLSSSDPNLQN 681 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +P + +R +A +G KL+ AD + IE R+ Sbjct: 682 IPVRTAEGRR-------------------------IRQAFVAPKGYKLLAADYSQIELRI 716 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++ ++ + AF D++ T A F V +VT DQR K + Sbjct: 717 MAHLSKDEGLMNAFRHNLDVHTATAAEVFKVELGEVTSDQRRSAKAINF----------- 765 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 G+ + + + Sbjct: 766 ---GLIYGMG------------------------------AQKLGKDIGVDTKTAKAYID 792 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + ++ V E + + GR L Sbjct: 793 VYFARYPGVREYMERTRAQA--------------------------SDQGYVETFFGRRL 826 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGY 622 D+ +N+ R +Q + DI+ + M+ Sbjct: 827 YLPDIHSNKP---QERAAAERTAINAP------MQGTAADIIKKAMVRVDNWLTASGLDA 877 Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + + M++ +PL E + Sbjct: 878 KVILQVHDELVLEVREDLVAEVSEKVREHMSAAAQ--LDVPLLVEVGVGDNW 927 >gi|293391271|ref|ZP_06635605.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951805|gb|EFE01924.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1] Length = 933 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 100/705 (14%), Positives = 207/705 (29%), Gaps = 165/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----------HDP 51 + +D ET ++ ++ +F ++ Sbjct: 357 KLIAVDTETDGLDYMS----------ANLVGISFALENGEAAYLPLHLDYLGAPKTLEKN 406 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 LK LEN ++ + N F+ T+ +D+ T++L+ + + Sbjct: 407 TALSALKPILENPNIGKIGQNLKFDMTIFARN-GIDLQGIE-FDTMLLSYTLDSTGRHNM 464 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G + I+ E ++ GEY D VT Sbjct: 465 DDLAKRY--------LGHQTISF----EDIAGKGKNQLTFNQIPLEQAGEYAAEDADVTM 512 Query: 170 EIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L + L + + G +D + + T L Sbjct: 513 KLQQVLWEKLEPQPGLVALYQSIELPLLSVLSRMERCGVLIDSDALFLQSNEITERLTAL 572 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 + + +L + ++L+ LF + GL +T + VL Sbjct: 573 EMQAYALAGQP-FNLASTKQLQEILFGKLGLPVLQKTPKGAPSTNEEVLEELAYSHELPK 631 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R S+ + L + +N T + TGR S QN+P + Sbjct: 632 VLVEHR-GLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 690 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 + +R IA +G K++ AD + IE R++A ++ Sbjct: 691 AGRR-------------------------IRQAFIARDGYKIIAADYSQIELRIMAHLSN 725 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF G+D++ +T A F + QVT +QR K + L Y Sbjct: 726 DQGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIY------------- 772 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ F +R + Q++ Sbjct: 773 -GMSSFVFPAR------------------------------LGISRADAQRYMDLYFQRY 801 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V +++ + + + GR L ++ Sbjct: 802 PNVQTFIHDIREKAK--------------------------AQGYVETLFGRRLYLPEIN 835 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVH 629 ++ + + R +Q + DI+ M+ +++ VH Sbjct: 836 SSNAMRR---KGTERVAINAP------MQGTAADIIKRAMIKLDGITRDDPDIHMIMQVH 886 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E ++ M + +PL + + + Sbjct: 887 DELVFEVRSEKIAFFSDLIKQHMEAAAELV--VPLIVDVGVGENW 929 >gi|121999199|ref|YP_001003986.1| DNA polymerase I [Halorhodospira halophila SL1] gi|121590604|gb|ABM63184.1| DNA polymerase I [Halorhodospira halophila SL1] Length = 904 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 96/702 (13%), Positives = 197/702 (28%), Gaps = 162/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 ID ET S + D ++ + + H + Sbjct: 328 SIDLETNSLNYM----------DAEIVGVSLAVEPGQAAYLPVAHCGPGAPDQLDRDRVL 377 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L+ LE + N ++ +VL +++ + +++ + + Sbjct: 378 DALRPLLEAEQPEKMGQNLKYDMSVLARY-GIELRGVAY-DSMLESYVLDSTAT------ 429 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + K L E R P G Y D + + + Sbjct: 430 --RHDMDSLAS-KYLGVEVTSYEQLCGKGVRQVPFAEIDVERAGHYAAEDADIALRLHQL 486 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + + G VD L ++ + +++Q Sbjct: 487 LYPRLQAESGLLRVFSQLEMPLLPVLSRMERHGVRVDCDLLERQSEELAGRMAEVEQRAH 546 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + ++++ F GL +T + VL + ++ Sbjct: 547 EEAG-EAFNLGSPKQIQEIFFERMGLPVIQRTPKGQPSTAESVLEELSARGHELPRLILE 605 Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 S+ + L + ++ D GR+ + A+ TGR S QN+P + Sbjct: 606 HRGLSKLKSTYTDKLPQLIHRDTGRVHTSYHQAVAA-TGRLSSSDPNLQNIPVRTPEGRR 664 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +AS G +L+ AD + +E R++A ++G++ Sbjct: 665 -------------------------IRKAFVASPGHRLITADYSQVELRIMAHLSGDEGL 699 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +AFE GED++ T A F A +V +QR K + G++ Sbjct: 700 RRAFEQGEDIHRATAAEVF--AADEVNDEQRRAAKAIN--------------FGLIYGMS 743 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + + +++ V Sbjct: 744 ------------------------------AWGLGRQLGIPRDEAQTYIDRYFERYPGVR 773 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + + GR L ++ + Sbjct: 774 AFMDRAREQARE--------------------------QGYVETVFGRRLHVPEIHSRN- 806 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632 R +Q + D++ M++ +V+ VHDE+ Sbjct: 807 --RQRREYAERTAINAP------MQGTAADVIKRAMIDVDALLNERFPESRLVMQVHDEL 858 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E P+ + LM + +PL+ E + Sbjct: 859 VLEVPEAQATAVGDEVRRLMEGSDRGMVSVPLEVELGVGDDW 900 >gi|163757541|ref|ZP_02164630.1| DNA polymerase I [Hoeflea phototrophica DFL-43] gi|162285043|gb|EDQ35325.1| DNA polymerase I [Hoeflea phototrophica DFL-43] Length = 980 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 104/725 (14%), Positives = 208/725 (28%), Gaps = 184/725 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF-----DDHP----VELWDCVHDPV- 52 + D ET S A ++ F+ D H Sbjct: 382 VVAFDTETTSLD----------AMQAELVGFSLAVPEAAPDTGELKVRACYAPLAHSNGV 431 Query: 53 ------------------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94 LK LE V + N ++ V+ +I I + Sbjct: 432 GDLLGGGGLQPGQMPVRAALDELKALLEEPAVLKIGQNLKYDMLVMAQH---NIEIKSFD 488 Query: 95 CTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 T++L+ + A+ E G + I + P + Sbjct: 489 DTMLLSYVLDAGQGGHGMDALSERW--------LGHKTIGY----KDVTGSGKSAIPFAQ 536 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDV 201 A Y D VT ++ L+ E+ L + + RG VD Sbjct: 537 VAIDKATAYAAEDAEVTLRLWHALKVRLVSEGMTSVYERLERPLAPVLMRMEQRGIRVDR 596 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----T 257 + L+ + L+ E++ L + ++L LF + L T+ + Sbjct: 597 QILSRLSGELAQGAAALEAEIQELAG-ENFNVGSPKQLGEILFDKMSLPGGSKTKTGQWS 655 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T + L + + + + ++ + L +N + + T + A+ TG Sbjct: 656 TSAQALEDLAAAGHELPRKIVDWRQLTKLKSTYTDALPGFINPETKRVHTSFAMAATTTG 715 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P + + +R+ +A G L+ Sbjct: 716 RLSSSDPNIQNIPVRTAEGRK-------------------------IRTAFVAEPGNVLI 750 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA +A +AF G D++ T + F V + + R K + Sbjct: 751 SADYSQIELRVLAHVANIPQLTQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAINF 810 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + G++ A+ + Sbjct: 811 GII--------------YGISAFGLANQLSIE---------------------------- 828 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + + ++ + + + ++ N Sbjct: 829 --RSEAGDYIRKYFERFPGIKDYMDATKAEAKE--------------------------N 860 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 + GR Y ++ ++ R +Q + DI+ M+ Sbjct: 861 GYVTTIFGRRAHYPEIRSSNP---QVRAFNERAAINAP------IQGSAADIIRRAMVRM 911 Query: 618 TKA------GYDIVLTVHDEIVCETPD-TDEFNASMLYHLMTSNPSWAKG--LPLKAEGY 668 A ++L VHDE++ ET + + ++ +M + A +PL+ + Sbjct: 912 EPALEAAGMQARMLLQVHDELIFETAEADADKIIPVIVEVMENAAMPAIDMAVPLQVDAR 971 Query: 669 ESKRY 673 +K + Sbjct: 972 AAKNW 976 >gi|237727972|ref|ZP_04558453.1| DNA polymerase I [Citrobacter sp. 30_2] gi|226910229|gb|EEH96147.1| DNA polymerase I [Citrobacter sp. 30_2] Length = 928 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 207/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQIARDRAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ + V N ++R +L +++ T++ + +V Sbjct: 403 ELLKPLLEDENAHKVGQNLKYDRGILANY-GIELRGIT-FDTMLESYILN------SVAG 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 455 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H ++ + +L+Q+ Sbjct: 512 MWPELQQHKGPLNVFENIDMPLVPVLSRVERNGVKIDPAVLHKHSEELTQRLNELEQKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 631 R-GLAKLKSTYTDKLPLMINKKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRR- 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 689 ------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 724 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT +QR K + G++ Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTSEQRRSAKAINF--------------GLIYGMS- 769 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + ++ + +++ V E Sbjct: 770 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 800 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNGA 834 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 + +Q + DI+ M+ + +++ VHDE+V Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDGWLQTEQPRVRMIMQVHDELV 885 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E D + ++ LM + +PL E + + Sbjct: 886 FEVHKDDLESVSKKIHQLMEN--ETQIDVPLLVEVGSGENW 924 >gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis] Length = 920 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 109/705 (15%), Positives = 198/705 (28%), Gaps = 167/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 D ET S ++ F+ FD HD Sbjct: 346 KRFAFDTETTSLD----------YRIAQIVGFSVAFDAQDAYYVPLAHDYEGAPEQLNRE 395 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 V+ +K LE+ V + H+ ++ VL+ + + + T++ + Sbjct: 396 VILAQIKPILEDESVKKIGHHLKYDAHVLENH-GIHLA-GWYFDTMLASYVLYSVATRHG 453 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V L E + K ++ Y D VT Sbjct: 454 MDDVARLY------------LSHLTTTYEQVAGRGAKQKTFNQIPLETAAHYAAEDAHVT 501 Query: 169 REIFKRLEPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 +++ L EL + + + G +D+A L Sbjct: 502 YRLYEVLSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLGGEFSNTMQN 561 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273 L+ ++ + + +++ LF + GL T +T + VL P A Sbjct: 562 LENQIMEIAG-ESFNVSSPKQVGEVLFEKLGLKGGKKTTTGQYSTSESVLEKI--EHPIA 618 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + R S+ + L + N D T + TGR S QN+P + Sbjct: 619 QLILEYR-GLSKLKSTYTDGLCKQANPDTHRVHTSYHQALTATGRLSSTDPNLQNIPIRA 677 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A EG+ L+ AD + IE R++A ++ Sbjct: 678 EIGR-------------------------QIRKAFVAPEGRVLLAADYSQIELRLMAHLS 712 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ L AF G+D++ T A + +VT DQR K + Sbjct: 713 QDEALLDAFIHGQDVHRRTAAEVLGIPLEEVTNDQRRQAKAVNF--------------GL 758 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ F + K + + Sbjct: 759 LYGMSEFGLIRQ------------------------------LGFTRQESQDYIKQYFHR 788 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + + Q + + GR L D+ Sbjct: 789 YPGIYDYMQRTRQVALE--------------------------QGFVETLLGRRLYTPDI 822 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVH 629 + + R Q + DI+ M+ K ++L VH Sbjct: 823 DARNMMVR---KAAERAAINAPL------QGSAADIIKMAMIEVDKMLPKDQAKMLLQVH 873 Query: 630 DEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + + L +M S +PL E + K + Sbjct: 874 DELVFEVDEDIADELAPKLAEVMQSVLQ--ISVPLVVEVGKGKNW 916 >gi|254427356|ref|ZP_05041063.1| DNA polymerase I superfamily [Alcanivorax sp. DG881] gi|196193525|gb|EDX88484.1| DNA polymerase I superfamily [Alcanivorax sp. DG881] Length = 921 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 99/705 (14%), Positives = 205/705 (29%), Gaps = 162/705 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 +D ET S + ++ + + H Sbjct: 342 DVFALDTETTSLNYM----------QAELVGVSVAVEAGKAAYIPFGHNYPGAPDQLDKQ 391 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111 + LK LE+ ++ V N ++ +VL + + + T++ + L + Sbjct: 392 FVLDALKPILEDDNLKKVGQNLKYDMSVLAEDVGITLRGVAY-DTMLESYV------LDS 444 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 V + S + K L + E + ++ Y D VT + Sbjct: 445 VATRHDMDSLAL---KYLGRKTISFEEIAGKGAKQLTFNQVGLHEASRYAAEDADVTLRL 501 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E L + I G VD L +Q + +L + Sbjct: 502 HQTLWPKLEKEGRLTEVFRDIELPLVTVLSRIERNGTYVDATLLKHQSQFLAKRMAELQE 561 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L L+ + + + T +T + VL P + Sbjct: 562 KACEIAGQ-EFNLSSPKQLGEILYQKLEIPVIKKTPKGAPSTAEAVLQELALEYPLPQVI 620 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R ++ + L E +N GR+ + A+ TGR S QN+P S Sbjct: 621 MDYR-GVAKLKNTYTDKLPELINQRTGRVHTSYHQAVAA-TGRLSSSDPNLQNIPVRSEE 678 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + +R +A +G+K+V D + IE R++A ++ + Sbjct: 679 GRK-------------------------IRQAFLAPKGRKIVACDYSQIELRIMAHLSDD 713 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE G D++ T A + +V+ + R K + Sbjct: 714 KGLTDAFEKGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINF--------------GLIY 759 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + + +++ Sbjct: 760 GMS------------------------------AFGLAKQLGLPRKEAQEYIDLYFERYP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + + +N + GR L ++ + Sbjct: 790 GVKKYMADTRALA--------------------------ADNGYVETVYGRRLYLPEIHS 823 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629 + R +Q + DI+ + M+ +++ VH Sbjct: 824 KN---GQRRQAAERAAINAP------MQGTAADIIKKAMIKVHDWLETTDFDAKMIMQVH 874 Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + + + M S +PL + + + Sbjct: 875 DELVFEVAEDQVDDLVREVKARMESAAE--LKVPLIVDAGIGENW 917 >gi|296105444|ref|YP_003615590.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059903|gb|ADF64641.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 930 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 110/702 (15%), Positives = 216/702 (30%), Gaps = 163/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++T ++ +F + HD + Sbjct: 355 AFDTETDSLDNIT----------ANMVGLSFATEPGIAAYVPVAHDYLDAPEQLSRERVL 404 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ + V N ++R +L+ +++ T++ + L +V Sbjct: 405 ELLKPILEDDNALKVGQNLKYDRGILQNY-GIELRGIA-FDTMLESYI------LDSVAG 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 457 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 513 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K L + I G +D + H + + T+L+Q+ Sbjct: 514 MWPKLQKHEGPLNVFQNIEMPLVPVLSRIERNGVKIDPTVLHNHSGELAQRLTELEQKAH 573 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 L + ++L+T LF + G+ T +T + VL P + Sbjct: 574 ELAG-EPFNLSSPKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632 Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L +N GR+ + A+ TGR S QN+P + Sbjct: 633 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVAA-TGRLSSTDPNLQNIPVRNEEGRR 690 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA + +V AD + IE R++A ++ ++ Sbjct: 691 -------------------------IRQAFIAPDDYLIVSADYSQIELRIMAHLSRDKGL 725 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A F + VT +QR K + G++ Sbjct: 726 LTAFAEGKDIHRATAAEVFGLPLDSVTNEQRRSAKAINF--------------GLIYGMS 771 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + ++ + +++ V Sbjct: 772 ------------------------------AFGLSRQLNIPRKESQKYMDLYFERYPGVL 801 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E ++ + GR L D+ ++ + Sbjct: 802 EYMERTRAQAKE--------------------------KGYVETLDGRRLYLPDIKSSNA 835 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEI 632 + +Q + DI+ M+ K +++ VHDE+ Sbjct: 836 ARRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLEKEKPRVKMIMQVHDEL 886 Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E D + S ++ LM ++ +PL E + + Sbjct: 887 VFEVHKDDLDSVSKTIHELMENSMK--LDVPLLVEVGSGENW 926 >gi|261210183|ref|ZP_05924480.1| DNA polymerase I [Vibrio sp. RC341] gi|260840723|gb|EEX67272.1| DNA polymerase I [Vibrio sp. RC341] Length = 938 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 103/703 (14%), Positives = 205/703 (29%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54 D ET S + ++ +F + HD + + Sbjct: 362 AFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDRAWVI 411 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ + V N ++ +V+ +++ R T++ + Sbjct: 412 AQLKPLLEDENKAKVGQNLKYDASVIARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 469 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ + +Y D VT + + Sbjct: 470 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQ 519 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G +D L +Q + + +L+++ Sbjct: 520 RISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEKKA 579 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 580 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 638 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 639 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 697 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 698 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 732 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 733 LDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GLIYGMS 778 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 779 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 808 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + + GR L ++ + Sbjct: 809 QYMEDTRSRAAE--------------------------QGYVETIFGRRLHLPEITSRNG 842 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 843 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDE 893 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S A +PL A+ + Sbjct: 894 LVFEVEESSLSEIEIKVQELMESAAELA--VPLVADAGHGDNW 934 >gi|192361143|ref|YP_001983931.1| DNA polymerase I [Cellvibrio japonicus Ueda107] gi|190687308|gb|ACE84986.1| DNA polymerase I [Cellvibrio japonicus Ueda107] Length = 937 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 104/707 (14%), Positives = 197/707 (27%), Gaps = 169/707 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52 D ET S + ++ + + C HD Sbjct: 360 EFSFDTETTSLD----------VMEARIVGVSVATEPGVAAYIPCGHDYMGAPEQLSLEW 409 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSAL 109 + LK LE+ + N ++R+VL + + ++ T++ + + Sbjct: 410 VLNQLKPLLEDEHKIKIGQNIKYDRSVLLNY-GITLRGIKY-DTMLESYVWNSVASRHNM 467 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + K +EL + ++ G Y D +T Sbjct: 468 DDLAQTY--LDYKTVTFEEL----------AGKGVKQLTFNQLKIEDAGHYAAEDADITL 515 Query: 170 EIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + + P ++ L + I G VD L + + +L Sbjct: 516 RLHQFFWPQLQQQSGLCKVFREIEMPLVPVLSHIERNGALVDAKLLGQHSIELGERMVQL 575 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274 +++ L + ++L LF + L + T +T + VL P Sbjct: 576 ERKAYELAGQ-EFNLSSPKQLGVILFEQLQLPVIKKTPTGTPSTAEEVLQELALDYPLPK 634 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + R ++ + L +N GR+ A+ TGR S QN+P + Sbjct: 635 VIMEYR-AMAKLKSTYTDKLPLMINPATGRIHTNYHQAVAA-TGRLSSQDPNLQNIPIKT 692 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R IA G KLV AD + IE R++A ++ Sbjct: 693 DEGRR-------------------------IRQAFIAPAGYKLVAADYSQIELRIMAHLS 727 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + L AFE G D++ T A F VA VT + R K + Sbjct: 728 SDSGLLSAFEKGLDVHRATAAEVFGVALDSVTPEMRRSAKAINFG--------------L 773 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ A + ++ + ++ Sbjct: 774 IYGMSAFGLAKQLH------------------------------VGRNEAQQYIDRYFER 803 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V N + + + GR L D+ Sbjct: 804 YPGVQRYMNNIRAQAHE--------------------------QGYVETLFGRRLYLPDI 837 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627 R +Q + DI+ M+ +++ Sbjct: 838 NAKN---KNFQLAAERTAINAP------MQGTAADIIKTAMIAVDNWLVEAGLDAKLIMQ 888 Query: 628 VHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E ++ + M++ +PL + + Sbjct: 889 VHDELVLEVAESCLDEVCTGVVARMSAAAR--LNVPLIVDAGVGNNW 933 >gi|34496234|ref|NP_900449.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC 12472] gi|34102088|gb|AAQ58455.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC 12472] Length = 928 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 97/706 (13%), Positives = 189/706 (26%), Gaps = 166/706 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 + D ET S + ++ +F + H Sbjct: 351 KVVSFDTETTSLDPM----------QARIVGVSFSVEAGHAAYLPLEHHYAGAPQQLPLE 400 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 LK LE+ N ++ VL + + +++ + + Sbjct: 401 AALAKLKPWLEDASKKKCGQNLKYDCHVLANH-GIALAGIA-DDSMLASYVLESHQRHNM 458 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + G+ ++ E + + Y D +T Sbjct: 459 DDLARRH--------LGENTVSY----EEICGKGAKQIGFSEVDVDIAANYAAEDADITL 506 Query: 170 EIFKRLEPLSSKEQELW---------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + + + E + + G +D + + + +L+Q Sbjct: 507 RLNQFFAGQLFGDLEKVYRDIELPVAEVLFKMERHGVLIDRDKLAAQSHQLGSQMLELEQ 566 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHL------EDLTETTCQRVLSSNKKLTPQAI 274 L + ++L+ LF + + +T + VL P Sbjct: 567 RAYELAGQP-FNLNSPKQLQEILFGKLAIPTKGVKKTPSGGYSTDESVLEQLALDHPLPK 625 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + R ++ + L + T + TGR + QN+P + Sbjct: 626 CILEYR-GLAKLKSTYTDKLPTLIYPQTGRVHTTYAQAVAITGRLASNDPNLQNIPVRTA 684 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 VR IA G ++V AD + IE R++A ++ Sbjct: 685 EGRR-------------------------VREAFIAPAGWQIVSADYSQIELRIMAHLSD 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ LKAF +GED++ T A F V A VT DQR K + L Sbjct: 720 DEGMLKAFASGEDIHRATAAEVFGVELAAVTSDQRRAAKAINFGLI-------------- 765 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ A + +A ++ + ++ Sbjct: 766 YGMSAFGLAAQLDIE------------------------------RSAAQQYIDRYFMRY 795 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V+E + + + GR L D+ Sbjct: 796 PGVAEYMQATREKARE--------------------------QGYVETVFGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628 + R +Q + D++ M+ +++ V Sbjct: 830 LSNPGRR---AGAERAAINAP------MQGTAADLIKLAMIAVQDWLERDGLQSKLIMQV 880 Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E P + L +M +PL AE + Sbjct: 881 HDELVLEVPQAELEQVKRRLPEIMAGAAE--LKVPLLAEVGAGDSW 924 >gi|328545870|ref|YP_004305979.1| DNA polymerase I [polymorphum gilvum SL003B-26A1] gi|326415610|gb|ADZ72673.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1] Length = 994 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 103/715 (14%), Positives = 200/715 (27%), Gaps = 175/715 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------ 51 + D ET S A ++ + H Sbjct: 406 VAFDTETTSLD----------AMQAELVGVSLATAPGKACYVPLAHVDGEGDLLGGGGLV 455 Query: 52 -------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 VL+ LE+ V +A N ++ V+ + I + T++L+ Sbjct: 456 EGQIPLAEALDVLRPMLEDAGVLKIAQNLKYDWLVMARY---GVEIAPYDDTMLLSYVLD 512 Query: 105 LPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E L + + Y Sbjct: 513 AGKGGNGMDELAER------------WLDHTPIPFKEVAGSGKAMVTFDKVPIDKATAYA 560 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P + E+ + + + RG VD + L+ Sbjct: 561 AEDADVTLRLWRVLKPRLVAERMATVYETLERPMVPVLARMERRGISVDRQMLSRLSGDF 620 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 L+ E+ +L + ++L LF + GL T+ +T VL Sbjct: 621 AQGMAALEAEIHALAG-ESFNIGSPKQLGDILFGKMGLPGGKKTKTGAWSTSVSVLDDLA 679 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + S+ + L ++ + + T L ++ TGR S Q Sbjct: 680 AEGHELPSKIVAWRQLSKLKSTYSDALPSYIHPETKRVHTSYSLASTTTGRLSSSEPNLQ 739 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R +A +G+KL+ AD + IE R Sbjct: 740 NIPVRTEEGRK-------------------------IRKAFVADKGRKLISADYSQIELR 774 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA MA +AF G D++ T + F V + R K + + Sbjct: 775 VLAHMADIPQLKQAFADGLDIHAMTASEMFGVPIEGMDPMVRRRAKAINFGI-------- 826 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A Sbjct: 827 ------IYGISAFGLAAQ------------------------------LGLSRGEAGDYI 850 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 K + ++ + + + + + GR Sbjct: 851 KTYFERFPGIRDYMEAIKKEVHT--------------------------KGYVTTVFGRK 884 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY----- 622 Y DV + + R +Q + DI+ M+ A Sbjct: 885 AHYPDVNTSNP---SLRAFYERAAINAP------IQGSAADIIRRAMVRMDAALAAAKLD 935 Query: 623 -DIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 +++L VHDE++ E P+ ++ +M + P+ +PL+ + + + Sbjct: 936 AEMLLQVHDELIFEVPEDQVEATIPVVRRVMETATEPALTLSVPLQVDARAADNW 990 >gi|260581683|ref|ZP_05849480.1| DNA polymerase I [Haemophilus influenzae NT127] gi|260095276|gb|EEW79167.1| DNA polymerase I [Haemophilus influenzae NT127] Length = 930 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 102/705 (14%), Positives = 213/705 (30%), Gaps = 165/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51 + +D ET S ++ ++ +F ++ + Sbjct: 354 KLIAVDTETDSLDYIS----------ANLVGISFALENGEATYLPLQLDYLDAPKTLEKS 403 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 +K LEN ++ + N F+ ++ +++ T++L+ + + Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 461 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G E IA E+ ++ EY D VT Sbjct: 462 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLEQATEYAAEDADVTM 509 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L E L ++ + G +D + + T L Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTAL 569 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 +++ +L + ++L+ LF + GL +T + VL Sbjct: 570 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 627 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ S+ + L + +NS T + TGR S QN+P + Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA EG +V AD + IE R++A ++G Sbjct: 688 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 722 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF G+D++ +T A F V+ +VT +QR K + Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------GLI 768 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + + ++ + Q++ Sbjct: 769 YGMS------------------------------AFGLSRQLGISRADAQKYMNLYFQRY 798 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + ++ + + + GR L D+ Sbjct: 799 PSVQQFMTDIREKAK--------------------------AQGYVETLFGRRLYLPDIN 832 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629 ++ + + R +Q + DI+ M+ + ++++ VH Sbjct: 833 SSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVH 883 Query: 630 DEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + F + M S +PL E + + Sbjct: 884 DELVFEVRSEKVAFFREQIKQHMESAAELV--VPLIVEVGVGQNW 926 >gi|170749936|ref|YP_001756196.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831] gi|170656458|gb|ACB25513.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831] Length = 1060 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 110/730 (15%), Positives = 201/730 (27%), Gaps = 188/730 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET S A ++ + H Sbjct: 458 VIAVDTETDSLD----------AHRAGLVGVSLAVATGRACYIPLAHVQAAKVQADATDL 507 Query: 51 -----------PVMP---------QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 +P LK LEN V V N ++ VL I + Sbjct: 508 FGEGAAPSDVVEPVPGQIPLKEAVARLKPLLENPGVLKVGQNLKYDWVVLARY---GIEV 564 Query: 91 HRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + T++++ + + G + I Sbjct: 565 APFDDTMLISYVLDAGKGGHGMDELARRH--------LGHQPITF----SDVAGTGRNKV 612 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGY 197 R A Y D VT +++ ++P E L + + RG Sbjct: 613 TFDRVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVAVYETLERPLLPVIARMEQRGI 672 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257 VD + L+ +L++E++ S +++ LF + GL T + Sbjct: 673 RVDREMLSRLSGDFSQILVRLEEEIQEDAG-EKFSVGSPKQIGDILFGKMGLPGAKKTPS 731 Query: 258 ----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 T +L + + + + S+ + L + + T L A Sbjct: 732 GQWATPATLLEELAQAGHELPKKILEWRQLSKLKSTYTDALQAHADRETARVHTSFSLAA 791 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGR S QN+P + +R +A+ G Sbjct: 792 TTTGRLSSSEPNLQNIPIRTEEGRR-------------------------IRRAFVAAPG 826 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 +L+ AD + IE R+LA MA KAFE G D++ T + F V ++T D R K Sbjct: 827 NRLISADYSQIELRLLAHMADIPELRKAFEDGIDIHAATASAMFGVPLKEMTPDLRRRAK 886 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + G++ A Sbjct: 887 TINF--------------GIIYGIS------------------------------AFGLA 902 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 K + ++ + + + + + G Sbjct: 903 DRLGIGREEASAFIKQYFEQFPGIRDY---IETTKKSCRDKGYVTTL------------- 946 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 GR Y + +N + R+ +Q + DI+ Sbjct: 947 ----------FGRVCHYPQIRSNNPSERASV---ERQAINAP------IQGSAADIIRRA 987 Query: 614 MMNATKAGY------DIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWA--KGLPLK 664 M A ++L VHDE+V E + + ++ +M P+ A +PL Sbjct: 988 MTRMEAALAAKKLNARMLLQVHDELVFEVAEDEVERTIPIIRGVMEEAPAPALTLKVPLV 1047 Query: 665 AEGYESKRYR 674 E + ++ Sbjct: 1048 VEANAAGNWQ 1057 >gi|327250490|gb|EGE62198.1| DNA polymerase I domain protein [Escherichia coli STEC_7v] Length = 605 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 30 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 79 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 80 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 137 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 138 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 185 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 186 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 245 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 246 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 304 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 305 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 363 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 364 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 398 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 399 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 444 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 445 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 474 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 475 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 508 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 509 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 559 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D ++ LM + +PL E + + Sbjct: 560 ELVFEVHKDDLEAVAKKIHQLMENCTR--LDVPLLVEVGSGENW 601 >gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 957 Score = 429 bits (1102), Expect = e-117, Method: Composition-based stats. Identities = 108/731 (14%), Positives = 217/731 (29%), Gaps = 192/731 (26%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53 + +D ET + ++ ++ +FG + H + Sbjct: 356 KLVAVDTETDNLDSMS----------ANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 405 Query: 54 --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 LK LEN DV + N ++ T+ Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH---G 462 Query: 88 IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + + T++ + + + + + G + I E Sbjct: 463 VQVAGVAFDTMLESYTLNSTGRHNMDELADRY--------LGHKTIEF----EEIAGKGK 510 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTIN 193 + A + +Y D VT ++ + L P E L + I Sbjct: 511 NQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIE 570 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +D + ++ ++L+Q + S V + ++L+ LF + GL + Sbjct: 571 RNGVLIDPEKLLAQSVEIEQRLSELEQLVHSEAG-EVFNLASTKQLQEILFTKLGLPVLK 629 Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTL 308 T +T + VL ++ S+ + L +N GR+ + Sbjct: 630 KTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY 689 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + TGR S QN+P + +R Sbjct: 690 HQAV-TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAF 723 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA +G K+V AD + IE R++A +A ++ + AF G+D++ T A F +A QVT +Q Sbjct: 724 IARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQ 783 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + L G++ ++ Sbjct: 784 RRSAKAINFGLI--------------YGMSEFGLSNQ----------------------- 806 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 ++ + + Q++ V + ++ ++ Sbjct: 807 -------LGISRADAKKYMELYFQRYPAVQQFMTDIRESA-------------------- 839 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + GR L ++ ++ + + R +Q + D Sbjct: 840 ------SKKGYVETLFGRRLYLPEIKSSNAMRR---KAAERVAINAP------MQGTAAD 884 Query: 609 ILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLP 662 I+ M+ KA +++ VHDE+V E + + ++ M +P Sbjct: 885 IIKVAMIGIDKAIRGDENIKMIMQVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVP 942 Query: 663 LKAEGYESKRY 673 L AE + Sbjct: 943 LIAEVGVGDNW 953 >gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393] gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393] Length = 950 Score = 429 bits (1102), Expect = e-117, Method: Composition-based stats. Identities = 98/705 (13%), Positives = 203/705 (28%), Gaps = 165/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----------HDP 51 + +D ET ++ ++ +F ++ Sbjct: 374 KLIAVDTETDGLDYMS----------ANLVGVSFALENGEAAYLPLHLDYLGAPKTLEKS 423 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 LK LEN ++ V N F+ T+ +++ T++L+ + + Sbjct: 424 TALAALKPILENPNIGKVGQNLKFDMTIFARN-GIELRGIE-FDTMLLSYTLDSTGRHNM 481 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G + I E ++ GEY D VT Sbjct: 482 DDLAKRY--------LGHQTIGF----EDIAGKGKNQLTFNQIPLEQAGEYAAEDADVTM 529 Query: 170 EIFKRLEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L + L L Q + G +D + + T L Sbjct: 530 KLQQVLWGKLQSQPSLVELYQSIELPLLGVLSRMERCGVLIDSDALFLQSNEITERLTAL 589 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 + + L + ++L+ LF + GL +T + VL Sbjct: 590 EMQAHELAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEDVLEELAYSHELPK 648 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R S+ + L + +N T + TGR S QN+P + Sbjct: 649 VLVEHR-GLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 707 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA +G K++ AD + IE R++A ++ Sbjct: 708 EGRR-------------------------IRQAFIARDGYKIIAADYSQIELRIMAHLSN 742 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF G+D++ +T A F + QVT +QR K + Sbjct: 743 DAGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINF--------------GLI 788 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + +R + Q++ Sbjct: 789 YGMSSFGLSRQ------------------------------LGISRADAQRYMDLYFQRY 818 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V +++ + + + GR L ++ Sbjct: 819 PGVQTFMHDIREKAK--------------------------AQGYVETLFGRRLYLPEIN 852 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629 ++ + + R +Q + DI+ M+ + +++ VH Sbjct: 853 SSNAMRR---KGAERVAINAP------MQGTAADIIKCAMIKLDEITRDDPDIHMIMQVH 903 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E ++ M + +PL + + + Sbjct: 904 DELVFEVRSEKIAFFSDLIKQHMEAAAELV--VPLIVDVGVGENW 946 >gi|225220079|ref|YP_002720046.1| DNA polymerase I [Enterobacteria phage SSL-2009a] gi|224986020|gb|ACN74584.1| DNA polymerase I [Enterobacteria phage SSL-2009a] Length = 763 Score = 429 bits (1102), Expect = e-117, Method: Composition-based stats. Identities = 238/767 (31%), Positives = 343/767 (44%), Gaps = 96/767 (12%) Query: 1 MA---TLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQ 55 M LF+D ET S +DL K G YAE +++ + D+ V+ WDC P MP+ Sbjct: 1 MKDFERLFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPTMPR 60 Query: 56 VLKEALENTDVTI---VAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111 L++AL V N F+R V++ + +D+P+ + T+++A + LP +L Sbjct: 61 ELRKALRRVSRKKAKIVMANGLLFDRLVIREKWGIDLPVCQIEDTMIMAFRHALPGSLDM 120 Query: 112 VGEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVT 168 + L + ++ K + GK LI RFCK R + H E W F Y D+ Sbjct: 121 QCQVLGVDAEHAKDKAGKALIKRFCKPTPKTYKIRRYTRETHPEEWAKFLRYAALDIIAM 180 Query: 169 REIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 RE++ R+ + +E +DQ INDRG+ VDV LA + V + +L +E Sbjct: 181 REVYWRIPDWGNTPKEDEILLIDQLINDRGFYVDVDLARAAIKAVQAHKEELKEEAWERF 240 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 G ++ + L L+ L + + ++T +L + + R+ AS + Sbjct: 241 GGKLTGNDFLPALRD---LAPAFTIHNAQKSTLNDLLED-PDFPDEGKVLIEMRLGASST 296 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 A K N LV +++DGR RG LQ+ GA RT RW+G F PQNL R S + +I Sbjct: 297 ASTKYNPLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRRE 356 Query: 347 PTSITSD----------------------PDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 S + D ++ + VR C+I ++GKK VVAD + + Sbjct: 357 GESDVAFWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNV 416 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA---QVTKDQRAIGKVMELALGY 441 E R LAW+AGE+ L F+ G D+Y T + F + P KD R IGK EL LGY Sbjct: 417 EGRGLAWIAGEKTALMVFKAGRDIYCETAGKMFGLDPEYIKANRKDLRQIGKACELGLGY 476 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM------------QENH 489 GG AF + A GL+L A ++K W A+ + +++ Sbjct: 477 GGGVAAFLQFAKNLGLDLYAMAEVMKGTFPDHIWAAAKRGYEYARINEAKRPPKPGKKDE 536 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 I + C+ +K+ WR+ H + W EL A I N P Sbjct: 537 RPTYILPKNVWLTCDAIKRMWRESHPKTVAFWAELEDAVLCAIRNPGKAYWAGANVRPDG 596 Query: 550 YMKKD----------------------KNNLILMLPSGRSLVYRDVGNNRS--------- 578 L + LPSGR + Y + + + Sbjct: 597 KKALKIVRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIALSVTTEIDEDTGK 656 Query: 579 ----------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N TTRQ +YTYGGKLTENIVQA+ RDILA M AGY+IVL+V Sbjct: 657 KRTSTRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMPGVEAAGYEIVLSV 716 Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 HDE++ E PDTD++ L LM P WAKG PL AEG RYRK Sbjct: 717 HDELITEVPDTDDYTTEELCALMCDLPVWAKGFPLAAEGDIMYRYRK 763 >gi|323493194|ref|ZP_08098324.1| DNA polymerase I [Vibrio brasiliensis LMG 20546] gi|323312541|gb|EGA65675.1| DNA polymerase I [Vibrio brasiliensis LMG 20546] Length = 931 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 103/706 (14%), Positives = 202/706 (28%), Gaps = 164/706 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 D ET S + ++ +F + HD Sbjct: 352 DVFAFDTETDSLDYMV----------ANLVGLSFATQEGVAAYVPVAHDYLDAPQQLDRD 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALK 110 + + LK LE+ V N ++ +VL ++++ + T++ + Sbjct: 402 WVLEQLKPILEDDTQAKVGQNLKYDASVLARY-DIELKGIK-HDTMLASYVYNSVGGKHD 459 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 AL+ E + ++ Y D VT Sbjct: 460 MDSLALRFLQHS----------CISFEQIAGKGKKQLTFNQIELDEASPYAAEDADVTLR 509 Query: 171 IFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + RL +++ L + I G +D +Q + +L+ Sbjct: 510 LHNRLMENIDQDEKLKAIYQDIEVPLVPVLSRIERTGVLIDDMKLAAQSQEIAQRLDELE 569 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQ 275 Q+ + + ++L+ LF + GL T +T + VL P Sbjct: 570 QKAYEI-AEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKL 628 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R ++ + L + +NS+ T + TGR S QN+P + Sbjct: 629 ILEYR-GLAKLKSTYTDKLPKMINSETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEE 687 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G K++ D + IE R++A ++G+ Sbjct: 688 GRR-------------------------IRQAFVAPHGYKIMAVDYSQIELRIMAHLSGD 722 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 Q L AF+ G+D++ T A QV+ +QR K + Sbjct: 723 QALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNF--------------GLIY 768 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + + +++ Sbjct: 769 GMS------------------------------AFGLAKQLGIPRGEAQDYMNKYFERYP 798 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + + A + + GR L ++ + Sbjct: 799 GVMQYMEDTRSAAAE--------------------------QGYVETIFGRRLHLPEIKS 832 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTV 628 + R +Q + DI+ + M+ +++ V Sbjct: 833 RNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQAEGDGRVKLLMQV 883 Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E ++ + LM S A +PL AE + Sbjct: 884 HDELVFEVQESALTEIESKVQELMESAAELA--VPLVAEAGHGDNW 927 >gi|168263110|ref|ZP_02685083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348113|gb|EDZ34744.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 928 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ V V N ++R VL+ +++ T++ + +V Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H ++ + + +L+++ Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT +QR K + G++ Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + ++ + +++ V E Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ + Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + +Q + DI+ M+ +++ VHDE+V Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E D + ++ LM + +PL E + + Sbjct: 886 FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|319762006|ref|YP_004125943.1| DNA polymerase i [Alicycliphilus denitrificans BC] gi|317116567|gb|ADU99055.1| DNA polymerase I [Alicycliphilus denitrificans BC] Length = 921 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 108/705 (15%), Positives = 208/705 (29%), Gaps = 167/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54 ID ET S +L ++ +F + HD + Sbjct: 348 AIDTETTSLDELR----------AEIVGISFSVEPGAAAYIPLAHDGPDTPAQLPLAEVL 397 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112 LK LE+ + + ++R V +++ + T++ + + P L ++ Sbjct: 398 ARLKPWLEDPKHPKLGQHVKYDRHVFANH-GIEVRGY-VHDTMLQSYVLEVHKPHGLASL 455 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E G+ I+ E + P + Y D T ++ Sbjct: 456 AERH--------TGRTGISY----EDLCGKGAKQIPFSQVPVDKAAAYSCEDSDQTLDVH 503 Query: 173 KRLEPLSSKEQE----------LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L P +++ I G +D + + +L+QE Sbjct: 504 RVLWPQLEADEKLRGIYALEIACSETLFRIERNGVLIDADRLAAQSHALGQRILQLEQEA 563 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L F + G+ + T +T + VL + P ++ Sbjct: 564 YDIAGQP-FNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLE 622 Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R S+ + L + + GR+ A TGR S QN+P + Sbjct: 623 HR-SLSKLKGTYTDKLAQLADPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPIRTPEGR 680 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 VR +A G+ + D + IE R++A ++G++ Sbjct: 681 R-------------------------VREAFVAPPGRVIASCDYSQIELRIMAHISGDEA 715 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L+AF G D++ T A F VA QVT +QR G+ Sbjct: 716 LLRAFHEGLDVHRATAAEVFGVALGQVTSEQRRYA--------------KVINFGLIYGM 761 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A TA + + Q++ V Sbjct: 762 S------------------------------SYGLAKNLGIDNTAAKNYIDRYFQRYPGV 791 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + + + GR L ++ + Sbjct: 792 WQYMQDTKAQAK--------------------------ARGYVETVFGRRLYLPEINSPN 825 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631 + R +Q + D++ + M+ A +++ VHDE Sbjct: 826 GPRRSA---AERAAINAP------MQGTAADLIKKAMVQVQDALDAAKPEVLMIMQVHDE 876 Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +V E P+ D + + +M +PL AE + K Sbjct: 877 LVFELPEGDVDWLRAEVPRIMAGVAE--LKVPLLAEVGVGPDWDK 919 >gi|87120949|ref|ZP_01076841.1| DNA polymerase I [Marinomonas sp. MED121] gi|86163787|gb|EAQ65060.1| DNA polymerase I [Marinomonas sp. MED121] Length = 925 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 97/701 (13%), Positives = 204/701 (29%), Gaps = 162/701 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54 D ET S + ++ F+ + HD + Sbjct: 351 AFDTETTSLNYMA----------AELVGFSVSVEAGKAAYIPVAHDYEGAPEQLDRDWVL 400 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + +K LE+ V + ++ VL ++++ T++ + + Sbjct: 401 EQIKPVLEDASQLKVGQHLKYDANVLANY-DIELKGIE-FDTMLESYIFNSTAN------ 452 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + + K L + E + K ++ Y D +T + + Sbjct: 453 --RHDMDSLAK-KFLSHKSVSFEEIAGKGAKQKTFNQIELEQAAFYAAEDADITFRLHQA 509 Query: 175 LEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + E L + + G +D L H + + +L+ + Sbjct: 510 IWAKLEKTPELVSIFKEIELPLVPVLAKMEQTGALIDPDLLHEQSSEIATRLEELEIKAH 569 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+ LF++ L +T + +L ++ Sbjct: 570 EMAGQA-FNLSSPKQLQEILFVKLELPILKKTPKGQPSTAEPILQELALDYELP-RIIME 627 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 S+ + L E + GR+ + + TGR S QN+P + Sbjct: 628 HRSLSKLKSTYTDKLPEMIQKTGRIHTSYHQAV-TATGRLSSTDPNLQNIPIRTAEGRR- 685 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA EG KL+ AD + IE R+++ ++ + L Sbjct: 686 ------------------------IRQAFIAPEGYKLIAADYSQIELRIMSHLSQDPGLL 721 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF +D++ T A F VA +VT +QR K + G++ Sbjct: 722 EAFANNKDVHKATAAEVFEVALDEVTGEQRRRAKAIN--------------FGLIYGMS- 766 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + ++ + + +++ V Sbjct: 767 -----------------------------AFGLAKQLGIGRPEAQKYIQRYFERYPGVRT 797 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + GR L D+ + + Sbjct: 798 YMENTREMARE--------------------------KGYVETLFGRRLYLPDIKASNAM 831 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 + R +Q + DI+ M+ ++L VHDE++ Sbjct: 832 MRQA---AERTAINAP------MQGTAADIIKRAMIEMHAWLKDTDLDIKMILQVHDELI 882 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E ++D A + +M + A +PL E + Sbjct: 883 FEVKESDLSAAQEKILDIMENTS--AIDVPLLVEAGIGDTW 921 >gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium tumefaciens str. C58] gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium tumefaciens str. C58] Length = 998 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 104/727 (14%), Positives = 213/727 (29%), Gaps = 186/727 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF-DDHP--------VELWDCVHD--- 50 + D ET S + ++ F+ D+ H Sbjct: 398 VVAFDTETTSLDPM----------QAELVGFSLAIADNGKDASGTDIRAAYVPLTHKTGS 447 Query: 51 ------------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 + LK+ LE+ V VA N ++ ++K + + Sbjct: 448 GGDLFSDGIKLAEGQAPFAEALERLKDLLEDEAVLKVAQNLKYDYLLMKRH---GVVMRS 504 Query: 93 WICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + T++++ + + E G IA + + Sbjct: 505 FDDTMLISYVLEAGKTTHGMDTLSERW--------LGHTPIAY----KDVTGSGKSSITF 552 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCV 199 Y D VT ++ L+P E+ L + + +RG V Sbjct: 553 DFVNIDKATAYAAEDADVTLRLWMALKPRLVSERLTKVYERLERPLVPVLAHMEERGITV 612 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256 D + L+ + + ++E+ L + ++L LF GL T+ Sbjct: 613 DRQILSRLSGELAQKAASFEEEIYELAG-ERFNIGSPKQLGDILFGRMGLPGGSKTKTGQ 671 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T +VL + + + + ++ + L ++ + + T L ++ Sbjct: 672 WSTSAQVLEDLAAEGAELPRKIVDWRQLTKLKSTYTDALPSYIHPETKRVHTSYALASTT 731 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P + + +R+ I++ G K Sbjct: 732 TGRLSSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHK 766 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ AD + IE RVLA +A AFE G D++ T + F V + + R K + Sbjct: 767 LLSADYSQIELRVLAHVADIPQLRNAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAI 826 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ A+ + Sbjct: 827 NF--------------GIIYGISAFGLANQLSIA-------------------------- 846 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + K + ++ + + + Sbjct: 847 ----RSEAGDYIKKYFERFPGIRDYMEATKAFARE------------------------- 877 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 N + GR Y ++ ++ + R +Q + DI+ M+ Sbjct: 878 -NGYVETIFGRRAHYPEIRSSNP---SVKAFNERAAINAP------IQGSAADIIRRAMI 927 Query: 616 NA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAE 666 K ++L VHDE++ E + + E ++ +M P+ + +PLK + Sbjct: 928 RIEPALEAEKLSARMLLQVHDELIFEVEEAEIEKTLPVVVSVMEDAAMPAISMRVPLKVD 987 Query: 667 GYESKRY 673 + + Sbjct: 988 ARAADNW 994 >gi|332088561|gb|EGI93675.1| DNA polymerase I domain protein [Shigella boydii 3594-74] Length = 605 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 30 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 79 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 80 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 137 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 138 LAER------------WLKHKTITFEEIAGKGKNPLTFNQIALEEAGRYAAEDADVTLQL 185 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 186 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 245 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 246 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 304 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 305 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 363 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 364 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 398 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 399 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 444 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 445 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 474 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 475 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 508 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 509 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 559 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 560 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601 >gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415846|ref|YP_152921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182461|ref|YP_218878.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161617122|ref|YP_001591087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168244255|ref|ZP_02669187.1| DNA polymerase I family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194444061|ref|YP_002043223.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448474|ref|YP_002048004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197364776|ref|YP_002144413.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|224585810|ref|YP_002639609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|20141441|sp|Q9F173|DPO1_SALTY RecName: Full=DNA polymerase I; Short=POL I gi|16422560|gb|AAL22838.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130103|gb|AAV79609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130094|gb|AAX67797.1| DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5' exonuclease [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161366486|gb|ABX70254.1| hypothetical protein SPAB_04960 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402724|gb|ACF62946.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406778|gb|ACF66997.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197096253|emb|CAR61851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205336940|gb|EDZ23704.1| DNA polymerase I family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|224470338|gb|ACN48168.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249116|emb|CBG26977.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996282|gb|ACY91167.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160508|emb|CBW20038.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915113|dbj|BAJ39087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225284|gb|EFX50342.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322716955|gb|EFZ08526.1| putative acyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132341|gb|ADX19771.1| putative xanthine/uracil permeases family protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990828|gb|AEF09811.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 928 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ V V N ++R VL+ +++ T++ + +V Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H ++ + + +L+++ Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT +QR K + G++ Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + ++ + +++ V E Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ + Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + +Q + DI+ M+ +++ VHDE+V Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E D + ++ LM + +PL E + + Sbjct: 886 FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3] gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3] Length = 995 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 103/727 (14%), Positives = 212/727 (29%), Gaps = 186/727 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF-DDHP--------VELWDCVHD--- 50 + D ET S + ++ F+ D+ H Sbjct: 395 VVAFDTETTSLDPM----------QAELVGFSLAIADNGKDASGTDIRAAYVPLTHKTGS 444 Query: 51 ------------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 LK+ LE+ V +A N ++ ++K + + Sbjct: 445 GGDLFSDGIRLAEGQVPFAEALARLKDLLEDEAVLKIAQNLKYDYLLMKRH---GVVMQS 501 Query: 93 WICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + T++++ + + E G IA + + Sbjct: 502 FDDTMLISYVLEAGKTTHGMDTLSERW--------LGHTPIAY----KDVAGSGKSSITF 549 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCV 199 Y D VT ++ L+P E+ L + + +RG V Sbjct: 550 DFVDIDKATAYAAEDADVTLRLWMVLKPRLAAERLTSVYERLERPLVPVLAHMEERGITV 609 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256 D + L+ + + ++E+ L + ++L LF GL T+ Sbjct: 610 DRQILSRLSGELAQKAAAFEEEVYQLAG-ERFNIGSPKQLGDILFGRMGLPGGSKTKTGQ 668 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T +VL + + + + ++ + L ++ + T L ++ Sbjct: 669 WSTSAQVLEDLAAEGAELPRKIVDWRQLTKLKSTYTDALPGYVHPQTKRVHTSYALASTT 728 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P + + +R+ I++ G K Sbjct: 729 TGRLSSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHK 763 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ AD + IE RVLA +A AFE G D++ T + F V + + R K + Sbjct: 764 LLSADYSQIELRVLAHVADIPQLRSAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAI 823 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ A+ + Sbjct: 824 NF--------------GIIYGISAFGLANQLSIA-------------------------- 843 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + K + ++ + + + Sbjct: 844 ----RSEAGEYIKKYFERFPGIRDYMEATKAFARE------------------------- 874 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 N + GR Y ++ ++ + R +Q + DI+ M+ Sbjct: 875 -NGYVETIFGRRAHYPEIRSSNPSMK---AFNERAAINAP------IQGSAADIIRRAMV 924 Query: 616 NAT------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAE 666 K ++L VHDE++ E + + E ++ +M + P+ + +PLK + Sbjct: 925 RIEPVLEAEKLSARMLLQVHDELIFEVEEGEIEKTLPIVVSVMENAAMPAISMRVPLKVD 984 Query: 667 GYESKRY 673 + + Sbjct: 985 ARAADNW 991 >gi|168232922|ref|ZP_02657980.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168821669|ref|ZP_02833669.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469064|ref|ZP_03075048.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455428|gb|EDX44267.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332830|gb|EDZ19594.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341832|gb|EDZ28596.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088405|emb|CBY98164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 928 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ V V N ++R VL+ +++ T++ + +V Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H ++ + + +L+++ Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT +QR K + G++ Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + ++ + +++ V E Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ + Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + +Q + DI+ M+ +++ VHDE+V Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E D + ++ LM + +PL E + + Sbjct: 886 FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|170724262|ref|YP_001751950.1| DNA polymerase I [Pseudomonas putida W619] gi|169762265|gb|ACA75581.1| DNA polymerase I [Pseudomonas putida W619] Length = 915 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 106/702 (15%), Positives = 196/702 (27%), Gaps = 160/702 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S A+ ++ +F + H HD + Sbjct: 337 AFDTETTSLD----------AQKAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVL 386 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG 113 LK L++ V N+ ++ +L + + + T++ + + Sbjct: 387 LALKPLLQDPAKEKVGQNAKYDINILANGSPAIQMQGVAY-DTMLESYVLNSTAT----- 440 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + K L E + ++ G Y D +T + + Sbjct: 441 ---RHDMDSLAQ-KYLDHATIAFEDIAGKGAKQLTFNQIHLDKAGPYAAEDADITLRLHQ 496 Query: 174 RLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQEL 222 L+ ++ + + I G VD AL + + V+ L++ Sbjct: 497 ALQARLAQTPSVLPVLMDIEMPLVPVLAKIERQGALVDAALLQIQSGELGVKMADLERRA 556 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L + L+ + G+ + T +T + VL + +V Sbjct: 557 YELAG-EEFNLGSPKQLGSILYDKLGMPVLSKTAKGQPSTAEAVLDELAEQGYPLPEVLM 615 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 S+ + L +N T + TGR S QN+P + Sbjct: 616 QYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAEGRR 675 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IAS G KL+ AD + IE R++A +A ++ Sbjct: 676 -------------------------IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF D++ T A F VA VT DQR K + G++ Sbjct: 711 LHAFRNNLDVHRATAAEVFGVALEAVTTDQRRSAKAINF--------------GLIYGMS 756 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + ++ V Sbjct: 757 AFGLAKQI------------------------------GVDRKQSQDYIDRYFARYPGVL 786 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + GR L D+ Sbjct: 787 AYMERTRAQAAE--------------------------QGFVETLFGRRLYLPDINAKNP 820 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632 L + R +Q + DI+ M+N ++L VHDE+ Sbjct: 821 ALR---KGAERTAINAP------MQGTAADIIKRAMVNVDNWLSESGLDARVILQVHDEL 871 Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E + + M+ +PL E + Sbjct: 872 VLEVREDLVDQVKDEIRGQMSKAAQ--LDVPLLVEVGVGSNW 911 >gi|197247609|ref|YP_002148920.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211312|gb|ACH48709.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 928 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ V V N ++R VL+ +++ T++ + +V Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H ++ + + +L+++ Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT +QR K + G++ Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + ++ + +++ V E Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ + Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + +Q + DI+ M+ +++ VHDE+V Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E D + ++ LM + +PL E + + Sbjct: 886 FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|288941214|ref|YP_003443454.1| DNA polymerase I [Allochromatium vinosum DSM 180] gi|288896586|gb|ADC62422.1| DNA polymerase I [Allochromatium vinosum DSM 180] Length = 911 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 103/704 (14%), Positives = 202/704 (28%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 D ET + A ++ +F + H + Sbjct: 336 AFDTETTALD----------AMQAELVGVSFALEPGRAAYVPLAHVYPGAPDQLDRDRVL 385 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLP--SALKA 111 LK LE+ V N ++ +VL DI + TL+ + L + Sbjct: 386 ARLKPLLEDPGRPKVGQNLKYDMSVLARY---DIALRGIAHDTLLESYVLDSTARHDLDS 442 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + + I E + + G Y D VT + Sbjct: 443 LAKRF--------LDHDTIRF----EDVAGKGAKQIGFDQVPLEQAGPYAAEDAEVTLRL 490 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + +P E L + + G +D A T + + + +L++ Sbjct: 491 HRVFQPRLAAVPALERLYREIEMPLVPVLSRLERAGVLIDSARLATQSAELARKILELEE 550 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + + +++ F E GL +T + VL + ++ Sbjct: 551 SAYRVAGRR-FNLGSPKQIGAIFFDELGLPVVAKTPKGAPSTSEDVLERLAAEGHELPRI 609 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + S+ + L ++ D T + TGR S QN+P + Sbjct: 610 ILDHRGLSKLRSTYTDKLPRMVDRDTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEG 669 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA+ G +L+ AD + IE R++A ++G++ Sbjct: 670 RR-------------------------IRRAFIAASGHRLLAADYSQIELRIMAHLSGDE 704 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A +AP VT +QR K + G Sbjct: 705 RLLAAFAGGQDIHRATAAEILGLAPEDVTGEQRRSAKAIN--------------FGLIYG 750 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + A + + +++ Sbjct: 751 MS------------------------------AFGLARQLGIERGAAQEYVDRYFERYPG 780 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + + + + + + GR L ++G+ Sbjct: 781 VRDFMDRTRRQVRE--------------------------DGYVETLFGRRLHLPEIGHG 814 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ ++L VHD Sbjct: 815 NQARRAAAERT---------AINAPMQGTAADIIKRAMIAVDAWIEAEQPAARLILQVHD 865 Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E ++ E + + M + A +PL + E + Sbjct: 866 ELVLEVAESAVEETRARVCAAMETAAELA--VPLVVDIGEGANW 907 >gi|168467328|ref|ZP_02701165.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|200387731|ref|ZP_03214343.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|195630257|gb|EDX48897.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|199604829|gb|EDZ03374.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|322613070|gb|EFY10020.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619141|gb|EFY16024.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322626007|gb|EFY22819.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626535|gb|EFY23341.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632354|gb|EFY29102.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635166|gb|EFY31887.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642757|gb|EFY39346.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647922|gb|EFY44394.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650672|gb|EFY47073.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652855|gb|EFY49192.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657170|gb|EFY53450.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662344|gb|EFY58559.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666879|gb|EFY63055.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672149|gb|EFY68264.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675871|gb|EFY71943.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681715|gb|EFY77741.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684092|gb|EFY80101.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193364|gb|EFZ78579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197721|gb|EFZ82854.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200707|gb|EFZ85778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207290|gb|EFZ92242.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211491|gb|EFZ96332.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218464|gb|EGA03172.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221056|gb|EGA05488.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226031|gb|EGA10250.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231711|gb|EGA15823.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236042|gb|EGA20120.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239538|gb|EGA23587.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243870|gb|EGA27881.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249232|gb|EGA33149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250526|gb|EGA34409.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258980|gb|EGA42632.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260225|gb|EGA43848.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265344|gb|EGA48841.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270566|gb|EGA54012.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 928 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ V V N ++R VL+ +++ T++ + +V Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H ++ + + +L+++ Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT +QR K + G++ Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + ++ + +++ V E Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ + Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + +Q + DI+ M+ +++ VHDE+V Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E D + ++ LM + +PL E + + Sbjct: 886 FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143920|ref|NP_807262.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213425460|ref|ZP_03358210.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|289829363|ref|ZP_06546975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25288536|pir||AH0950 DNA polymerase I [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504737|emb|CAD03100.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi] gi|29139556|gb|AAO71122.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 928 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ V V N ++R VL+ +++ T++ + +V Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H ++ + + +L+++ Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT +QR K + G++ Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + ++ + +++ V E Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ + Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + +Q + DI+ M+ +++ VHDE+V Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E D + ++ LM + +PL E + + Sbjct: 886 FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|198245003|ref|YP_002217922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354415|ref|YP_002228216.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859193|ref|YP_002245844.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238913940|ref|ZP_04657777.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|197939519|gb|ACH76852.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274196|emb|CAR39214.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710996|emb|CAR35364.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326629546|gb|EGE35889.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 928 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ V V N ++R VL+ +++ T++ + +V Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H ++ + + +L+++ Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT +QR K + G++ Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + ++ + +++ V E Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ + Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + +Q + DI+ M+ +++ VHDE+V Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E D + ++ LM + +PL E + + Sbjct: 886 FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|86137039|ref|ZP_01055617.1| DNA polymerase I [Roseobacter sp. MED193] gi|85826363|gb|EAQ46560.1| DNA polymerase I [Roseobacter sp. MED193] Length = 935 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 96/715 (13%), Positives = 196/715 (27%), Gaps = 177/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + ID ET + ++ + + H Sbjct: 350 YVAIDTETTGLDAMVV----------DLVGVSLCVEPGTACYIPLTHKQGGDDLFGGEGL 399 Query: 51 -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 ++LK LE+ V + N ++ +L I + T++++ + Sbjct: 400 AEGQMPLEQALEMLKPMLEDPAVLKIGQNMKYDAKILHRY---GIDVAPIDDTMLMSYAL 456 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + E K K L+ R Y Sbjct: 457 HAGEHNHGMDILSERY--LDHKPIPIKPLL----------GTGKSAITFDRVPIADAVPY 504 Query: 161 CKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T +++ +P + Q L + + G VD ++ Sbjct: 505 AAEDADITLRLWQHFKPELHQRQVTVVYETLERPLVPVLAEMERNGIKVDRDTLSRMSNA 564 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266 + L+ E+ +L + ++L LF + L +T T +L Sbjct: 565 FAQKMAALEDEIHALAGQP-FNVGSPKQLGEILFDKLELPGGKKGKTGAYATGADILEDL 623 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFP 325 V + R S+ + L + +N D GR+ + GA+ TGR + Sbjct: 624 ATEHALPALVLDWRQ-LSKLKSTYTDALQDHINPDTGRVHTSYIQTGAN-TGRMASSDPN 681 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S +R + +G L+ D + IE Sbjct: 682 LQNIPVRSEEGRR-------------------------IREAFVPEQGNVLLSLDYSQIE 716 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +AG AF G+D++ T + F+V ++T D R K + Sbjct: 717 LRILAHVAGIDALKAAFAAGQDIHAMTASEMFDVPMEEMTADIRRQAKAIN--------- 767 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ A + Sbjct: 768 -----FGVIYGIS------------------------------GFGLARNLRIPRAEAQG 792 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + ++ + + + ++ + + G Sbjct: 793 FIDRYFERFPGIRAYMDRTVEFAKE--------------------------HGYVQTLFG 826 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621 R + ++ + R +Q + D++ M+ Sbjct: 827 RKIHTPEI----AAKGPRAGFAKRAAINAP------IQGTAADVIRRAMVKMPPAIAHLP 876 Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ E +M + P+ + L + + Sbjct: 877 ARMLLQVHDELLFEVPEAAVEETIETARRVMENAADPALHLDVKLSVDAGRGNNW 931 >gi|221640521|ref|YP_002526783.1| DNA polymerase I [Rhodobacter sphaeroides KD131] gi|221161302|gb|ACM02282.1| DNA polymerase I [Rhodobacter sphaeroides KD131] Length = 937 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 103/715 (14%), Positives = 196/715 (27%), Gaps = 176/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + ID ET S ++ ++ + + H Sbjct: 351 HVAIDTETTSLDEMR----------AELVGISLCVEAGAACYIPLGHRAGGGDLFGASEL 400 Query: 51 --PVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 MP +LK LE+ + + N ++ +L I + T++++ + Sbjct: 401 VADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKILARH---GIRVAPIDDTMLMSYAM 457 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + + K K L+ R Y Sbjct: 458 HAGRHGHGMDELCDTY--LGHKPIAIKTLL----------GSGKSQITFDRVPVEQAVCY 505 Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D VT ++K +P + E+ L + + G VD ++ Sbjct: 506 AAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMSNA 565 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266 + L+ E+ +L G + ++L LF + GL + T VL Sbjct: 566 FAQKMAGLEAEIHALAGGP-FNVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDL 624 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFP 325 + + S+ + L E ++ + GR+ + GA+ TGR + Sbjct: 625 AAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPN 683 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S +R +A GK LV D + IE Sbjct: 684 LQNIPVRSEEGRR-------------------------IREAFVAPPGKLLVSLDYSQIE 718 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A +AF G D++ T + FNV + R K + Sbjct: 719 LRILAHIADIPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAIN--------- 769 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ A + Sbjct: 770 -----FGVIYGIS------------------------------GFGLARNLRIPRADAQG 794 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + ++ + +E + N + G Sbjct: 795 FIDRYFERFPGIRGYMDETIAFAK--------------------------ANGHVETLFG 828 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621 R + ++ R +Q + D++ M+ KA Sbjct: 829 RRINTPEINAK----GPGAGFARRAAINAP------IQGTAADVIRRAMIRMPKAIRGMP 878 Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + + +M P+ +PL E + Sbjct: 879 ATMLLQVHDELLFEVEEEAADALIERVREVMEGAADPAVKLTVPLTVEAGRGLNW 933 >gi|126463449|ref|YP_001044563.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029] gi|126105113|gb|ABN77791.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029] Length = 937 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 103/715 (14%), Positives = 196/715 (27%), Gaps = 176/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + ID ET S ++ ++ + + H Sbjct: 351 HVAIDTETTSLDEMR----------AELVGISLCVEAGAACYIPLGHRAGGGDLFGASEL 400 Query: 51 --PVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 MP +LK LE+ + + N ++ +L I + T++++ + Sbjct: 401 VADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKILARH---GIRVAPIDDTMLMSYAM 457 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + + K K L+ R Y Sbjct: 458 HAGRHGHGMDELCDTY--LGHKPIAIKTLL----------GSGKSQITFDRVPVEQAVCY 505 Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D VT ++K +P + E+ L + + G VD ++ Sbjct: 506 AAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMSNA 565 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266 + L+ E+ +L G + ++L LF + GL + T VL Sbjct: 566 FAQKMAGLEAEIHALAGGP-FNVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDL 624 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFP 325 + + S+ + L E ++ + GR+ + GA+ TGR + Sbjct: 625 AAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPN 683 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S +R +A GK LV D + IE Sbjct: 684 LQNIPVRSEEGRR-------------------------IREAFVAPPGKLLVSLDYSQIE 718 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A +AF G D++ T + FNV + R K + Sbjct: 719 LRILAHIADIPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAIN--------- 769 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ A + Sbjct: 770 -----FGVIYGIS------------------------------GFGLARNLRIPRADAQG 794 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + ++ + +E + N + G Sbjct: 795 FIDRYFERFPGIRGYMDETISFAK--------------------------ANGHVETLFG 828 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621 R + ++ R +Q + D++ M+ KA Sbjct: 829 RRINTPEINAK----GPGAGFARRAAINAP------IQGTAADVIRRAMIRMPKAIRGMP 878 Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + + +M P+ +PL E + Sbjct: 879 ATMLLQVHDELLFEVEEEAADALIERVREVMEGAADPAVKLTVPLTVEAGRGLNW 933 >gi|126738358|ref|ZP_01754079.1| DNA polymerase I [Roseobacter sp. SK209-2-6] gi|126720855|gb|EBA17560.1| DNA polymerase I [Roseobacter sp. SK209-2-6] Length = 936 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 95/714 (13%), Positives = 199/714 (27%), Gaps = 175/714 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET ++ ++ + + H Sbjct: 351 YVAVDTETTGLDEMVV----------DLVGISLCVEPGEACYIPLTHKVGGDDLFGGEGL 400 Query: 51 -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 ++LK LE+ + + N ++ +L + T++++ + Sbjct: 401 AEGQMPLDQALEMLKPVLEDPAILKIGQNMKYDAKILHRY---GADVAPIDDTMLMSYAL 457 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + E K K L+ R Y Sbjct: 458 HAGLHGHGMDTLSERY--LDHKPIPIKPLL----------GSGKSAITFDRVPIANAVPY 505 Query: 161 CKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T +++ +P +EQ L + + G VD + ++ Sbjct: 506 AAEDADITLRLWQLFKPQLHQEQVTTVYETLERPLVPVLAQMERHGIKVDREVLSRMSNA 565 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266 + L+ E+ + + ++L LF + L +T T +L Sbjct: 566 FAQKMAGLESEIHEMAGAD-FNVGSPKQLGEILFDKLELPGGKKGKTGAYATGADILEDL 624 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 V + R S+ + L + +N++ R T + TGR + Sbjct: 625 ATEHALPGLVLDWRQ-LSKLKSTYTDALQDHINAETRRVHTSYAQTGASTGRMASTDPNL 683 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P + +R +A EG L+ D + IE Sbjct: 684 QNIPVRTEEGRR-------------------------IREAFVAGEGNVLLSLDYSQIEL 718 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA MAG +AF G+D++ T + F+V A++T D R K + Sbjct: 719 RILAHMAGIDALKQAFAEGQDIHAMTASEMFDVPMAEMTPDIRRQAKAIN---------- 768 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ A + Sbjct: 769 ----FGVIYGIS------------------------------GFGLARNLRIPRKEAQDF 794 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + Q+ + + + ++ + + GR Sbjct: 795 IDRYFQRFPGIRRYMDSTVEFAKE--------------------------HGFVQTLFGR 828 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY 622 + ++ R +Q + D++ M+ Sbjct: 829 KIHTAEINAK----GPRAGFAKRAAINAP------IQGTAADVIRRAMIRMPGAIAHLPA 878 Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ E ++ +M P+ + L E + + + Sbjct: 879 RMLLQVHDELLFEVPEAAVEETIAVAKEVMEGAANPAVHLDVKLLVEAGQGQNW 932 >gi|167551523|ref|ZP_02345278.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323683|gb|EDZ11522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 928 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ V V N ++R VL+ +++ T++ + +V Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H ++ + + +L+++ Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKSGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT +QR K + G++ Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + ++ + +++ V E Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ + Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + +Q + DI+ M+ +++ VHDE+V Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E D + ++ LM + +PL E + + Sbjct: 886 FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J] gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA] gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J] gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA] Length = 937 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 105/710 (14%), Positives = 192/710 (27%), Gaps = 169/710 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------- 50 + ID ET S + ++ + H Sbjct: 355 DLVCIDTETTSIDPML----------AQLVGISLSVKPGEACYIPVAHRGPDVAGFDAAA 404 Query: 51 ----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL 105 + +K LE+ V + ++ V DI + T++ + Sbjct: 405 QLSRDTVLARMKLWLEDESRKKVGQHLKYDAHVFANH---DIALRGIEHDTMLESYVLES 461 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 A ++ K + EY D Sbjct: 462 HRNHGMDALAERVLHLKTITYEA----------VCGKGASQIGFDEVPLDRATEYAAEDA 511 Query: 166 TVTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 VT + + L P E + Q + G +D + + + Sbjct: 512 DVTLRLHRTLFPKVAEDDKLRYVYEQIEMPASIVLQKMERNGVLIDADRLAKQSNELGLR 571 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLT 270 L+ E L + +++ F + L + T +T + VL + Sbjct: 572 LIDLEAEAHKLAGQP-FNLSSPKQIGDIFFNQMKLPVIKKTASGAPSTDEEVLQKLAEDY 630 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 P + + R ++ + L + +N T + TGR + QN+P Sbjct: 631 PLPKLLLDYR-GLAKLKSTYTDKLPKMVNPRTGRVHTTYGQATAVTGRLASTDPNLQNIP 689 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 + +R IA EG +V AD + IE R++A Sbjct: 690 VRTEEGRR-------------------------IREAFIAPEGSVIVSADYSQIELRIMA 724 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ ++ ++AF G+D++ T A FNV P +VT DQR + KV+ Sbjct: 725 HLSQDEGLMRAFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINF------------- 771 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 G++ A A + + Sbjct: 772 -GLIYGMS------------------------------AFGLASNLGIGRDAAKLYIDRY 800 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 ++ + +E Q + + GR L Sbjct: 801 FARYPGAASYMDETRQRARE--------------------------QGYVETVFGRRLWL 834 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDI 624 D+ R +Q + D++ M+ + Sbjct: 835 PDINGGNGPRRQA---AERAAINAP------MQGTAADLIKLSMLAVQGWLDAEAMRSRL 885 Query: 625 VLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V+ VHDE+V E P + L LM S + +PL AE + Sbjct: 886 VMQVHDELVLEVPQDELAVVRERLPELMCSVAT--LRVPLVAEVGVGANW 933 >gi|330826175|ref|YP_004389478.1| DNA polymerase I [Alicycliphilus denitrificans K601] gi|329311547|gb|AEB85962.1| DNA polymerase I [Alicycliphilus denitrificans K601] Length = 921 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 108/705 (15%), Positives = 208/705 (29%), Gaps = 167/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54 ID ET S +L ++ +F + HD + Sbjct: 348 AIDTETTSLDELR----------AEIVGISFSVEPGAAAYIPLAHDGPDTPAQLPLAEVL 397 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112 LK LE+ + + ++R V +++ + T++ + + P L ++ Sbjct: 398 ARLKPWLEDPKHPKLGQHVKYDRHVFANH-GIEVRGY-VHDTMLQSYVLEVHKPHGLASL 455 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E G+ I+ E + P + Y D T ++ Sbjct: 456 AERH--------TGRTGISY----EDLCGKGAKQIPFSQVPVDKAAAYSCEDSDQTLDVH 503 Query: 173 KRLEPLSSKEQE----------LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L P +++ I G +D + + +L+QE Sbjct: 504 RVLWPQLEADEKLRGIYALEIACSETLFRIERNGVLIDADRLAAQSHALGQRILQLEQEA 563 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L F + G+ + T +T + VL + P ++ Sbjct: 564 YDIAGQP-FNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLE 622 Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R S+ + L + + GR+ A TGR S QN+P + Sbjct: 623 HR-SLSKLKGTYTDKLAQLADPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPIRTPEGR 680 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 VR +A G+ + D + IE R++A ++G++ Sbjct: 681 R-------------------------VREAFVAPPGRVIASCDYSQIELRIMAHISGDEA 715 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L+AF G D++ T A F VA QVT +QR G+ Sbjct: 716 LLRAFHEGLDVHRATAAEVFGVALGQVTSEQRRYA--------------KVINFGLIYGM 761 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A TA + + Q++ V Sbjct: 762 S------------------------------SYGLAKNLGIDNTAAKNYIDRYFQRYPGV 791 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + + + GR L ++ + Sbjct: 792 WQYMQDTKAQAK--------------------------ARGYVETVFGRRLYLPEINSPN 825 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631 + R +Q + D++ + M+ A +++ VHDE Sbjct: 826 GPRRSA---AERAAINAP------MQGTAADLIKKAMVQVQDALDAAKPEVLMIMQVHDE 876 Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +V E P+ D + + +M +PL AE + K Sbjct: 877 LVFELPEGDVNWLRAEVPRIMAGVAE--LKVPLLAEVGVGPDWDK 919 >gi|260912940|ref|ZP_05919425.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325] gi|260632930|gb|EEX51096.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325] Length = 930 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 98/705 (13%), Positives = 204/705 (28%), Gaps = 165/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 + +D ET + ++ ++ +F ++ H+ Sbjct: 354 KLIAVDTETDNLDYMS----------ANLVGISFALENGEAAYLPLRHNYIGAPQQIDFD 403 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 LK LEN + V N ++ ++ +++ + T++L+ + Sbjct: 404 TALSRLKPILENPVIEKVGQNIKYDLSIFARN-GINVQGVTY-DTMLLSYVLDSTGRHNM 461 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G + I+ E + Y D +T Sbjct: 462 DDLAKRY--------LGHQTISF----EEIAGKGKGQLTFDQIPLEHATTYAAEDADITM 509 Query: 170 EIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L + E L + + G +D T + + T L Sbjct: 510 KLQQVLWEKVSEQPTLVKLYRTMELPLLSVLSRMERNGVLIDSNTLLTQSNKIAERLTAL 569 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274 +Q+ L + ++L+ LF + GL + T +T + VL Sbjct: 570 EQQAYELAGQT-FNLASTKQLQEILFDKLGLPVLKKTPKGAPSTNEEVLEELAYDHELPK 628 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R S+ + L + +N T + TGR S QN+P + Sbjct: 629 LLVEHR-GLSKLKSTYTDKLPQMINKHTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R I EG +V AD + IE R++A ++ Sbjct: 688 EGRR-------------------------IRQAFIPREGFTMVAADYSQIELRIMAHLSK 722 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF G+D++ +T A F + QVT +QR K + Sbjct: 723 DQGLINAFSEGKDIHRSTAAEIFGLPLEQVTSEQRRSAKAINF--------------GLI 768 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + ++ + Q++ Sbjct: 769 YGMSSFGLSRQ------------------------------LGIPRNDAQKYMDLYFQRY 798 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V ++ + + + R L D+ Sbjct: 799 PGVQTFMTDIRETAK--------------------------AQGYVATLFDRRLYLPDIN 832 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629 ++ + + R +Q + DI+ M++ K +++ VH Sbjct: 833 SSNAIRR---KAAERVAINAP------MQGTAADIIKRAMIDLDKQIVGNPDIQMIMQVH 883 Query: 630 DEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E S + M +PL + + + Sbjct: 884 DELVFEVRSEKVEEFSQLIKQTMEKAAQLV--VPLIVDVGVGQNW 926 >gi|168237613|ref|ZP_02662671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736970|ref|YP_002116921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204930172|ref|ZP_03221149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194712472|gb|ACF91693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289392|gb|EDY28757.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320576|gb|EDZ05778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 928 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 207/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ V V N ++R VL+ +++ T++ + +V Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H ++ + + +L+++ Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT +QR K + G++ Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + ++ + +++ V E Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ + Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + +Q + DI+ M+ +++ VHDE+V Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E D ++ LM + +PL E + + Sbjct: 886 FEVHKDDLDAVSKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|77464609|ref|YP_354113.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1] gi|77389027|gb|ABA80212.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1] Length = 937 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 103/715 (14%), Positives = 196/715 (27%), Gaps = 176/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + ID ET S ++ ++ + + H Sbjct: 351 HVAIDTETTSLDEMR----------AELVGISLCVEAGAACYIPLGHRAGGGDLFGASEL 400 Query: 51 --PVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 MP +LK LE+ + + N ++ +L I + T++++ + Sbjct: 401 VADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKILARH---GIRVAPIDDTMLMSYAM 457 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + + K K L+ R Y Sbjct: 458 HAGRHGHGMDELCDTY--LGHKPIAIKTLL----------GSGKSQITFDRVPVEQAVCY 505 Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D VT ++K +P + E+ L + + G VD ++ Sbjct: 506 AAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMSNA 565 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266 + L+ E+ +L G + ++L LF + GL + T VL Sbjct: 566 FAQKMAGLEAEIHALAGGP-FNVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDL 624 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFP 325 + + S+ + L E ++ + GR+ + GA+ TGR + Sbjct: 625 AAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPN 683 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S +R +A GK LV D + IE Sbjct: 684 LQNIPVRSEEGRR-------------------------IREAFVAPPGKLLVSLDYSQIE 718 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A +AF G D++ T + FNV + R K + Sbjct: 719 LRILAHIADIPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAIN--------- 769 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ A + Sbjct: 770 -----FGVIYGIS------------------------------GFGLARNLRIPRADAQG 794 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + ++ + +E + N + G Sbjct: 795 FIDRYFERFPGIRGYMDETIAFAK--------------------------ANGHVETLFG 828 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621 R + ++ R +Q + D++ M+ KA Sbjct: 829 RRINTPEINAK----GPGAGFARRAAINAP------IQGTAADVIRRAMIRMPKAIRGMP 878 Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + + +M P+ +PL E + Sbjct: 879 ATMLLQVHDELLFEVEEEAADALIERVREVMEGAADPAVKLTVPLTVEAGRGLNW 933 >gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16] gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16] Length = 938 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 101/719 (14%), Positives = 192/719 (26%), Gaps = 179/719 (24%) Query: 1 MATL------FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---- 50 M + ID ET S + ++ + + H Sbjct: 349 MRRIEAAPLVAIDTETTSLDPM----------QAQLVGISLSVEPGVACYIPVAHRGPDV 398 Query: 51 -----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99 + ++ LE+ + N ++ V + + T++ Sbjct: 399 AGLPDHGQLSREFVLGRMRAWLEDASRPKLGQNLKYDVHVFANH-GVKLRGVA-HDTMLQ 456 Query: 100 ARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 + + ++ E L L + E + Sbjct: 457 SYVLASHRNHGMDSLAERL------------LSLKTITYEEVCGKGASQIGFDQIDLARA 504 Query: 158 GEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHT 206 EY D VT + +++ P E + + Q + G +D Sbjct: 505 TEYAAEDADVTLRLHRKMFPQVEAAAGLRRVYEEIEMPVSVVLQKVERNGVLIDAERLAA 564 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRV 262 + + L+Q + +++ LF + L + T +T + V Sbjct: 565 QSAELGQRMLALEQAAYEAAGQP-FNLGSPKQIGEILFSQMKLPVVKKTASGAPSTDEEV 623 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSG 321 L + P + + R ++ + L + +N GR+ + A TGR + Sbjct: 624 LQKLAEDYPLPKLLLDYR-GLAKLKSTYTDKLPKMVNPQTGRVHTSYGQATA-VTGRLAS 681 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 QN+P + +R IA G +V AD Sbjct: 682 TEPNLQNIPVRTEEGRR-------------------------IREAFIAEPGSVIVSADY 716 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R++A ++G++ L+AF GED++ T F V V+ +QR Sbjct: 717 SQIELRIMAHISGDENLLRAFANGEDIHRATAGEIFGVEREAVSSEQRRYA--------- 767 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 G++ A Sbjct: 768 -----KVINFGLIYGMS------------------------------AFGLAGNLGIERE 792 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 A + + ++ V+ E Q + + Sbjct: 793 AAKHYIDRYFMRYPGVAHYMEETRQTARE--------------------------QGYVE 826 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---- 617 GR L D+ R +Q + D++ M+ Sbjct: 827 TVFGRRLWLPDINGGSGPRRQA---AERAAINAP------MQGTAADLIKLSMIAVQGWL 877 Query: 618 --TKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ VHDE+V E P+ + L LM S +PL AE + Sbjct: 878 ERDGLQTRQIMQVHDELVLEVPEHELELVKVRLPELMCSVAQ--LRVPLVAEVGSGANW 934 >gi|288800530|ref|ZP_06405988.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039] gi|288332743|gb|EFC71223.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039] Length = 921 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 205/700 (29%), Gaps = 159/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 + +D ET S L + ++ +F ++ Q + A Sbjct: 349 RIVSLDTETTSLNAL----------EAELVGLSFSVSPQEAFYVPIPNEQQKAQKIVNAF 398 Query: 62 ----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 EN ++ V N ++ VL+ + + T++ + + E Sbjct: 399 QPLYENEEIEKVGQNIKYDIEVLRNY-GITMK-GPLFDTMIAHYLLQPELRHNMDDMAET 456 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 K +LI A +Y D +T ++ Sbjct: 457 Y--LRYKTIHIDQLIG---------AKGKDQLNMRSLAPEQIVDYACEDADITLQLKNIF 505 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 EP E L Y+ + G +DV +++ + + + +Q++ L Sbjct: 506 EPKLKEAGLYPLFKEVEMPLIYVLAEMECNGVKLDVQALSEVSKTFNEQLSLYEQKIYEL 565 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ T LF + + T+T T + L P ++ R Sbjct: 566 AG-ETFNISSPKQVGTILFEKLKVAEKPKKTKTGQYVTSEEELQKLINKHPIIDEILKYR 624 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N T + TGR S QN+P +E Sbjct: 625 -GLKKLLSTYVDALPKLVNPKTGNIHTSFNQATTATGRLSSSDPNLQNIPVRGEDGKE-- 681 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R C I +EG AD + IE R++A ++G++ ++ Sbjct: 682 -----------------------IRKCFIPNEGCLFFSADYSQIELRIMAHLSGDENMIE 718 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ T A+ + +VT+D+R K + G+ + Sbjct: 719 AFIEGHDIHAATAAKIYKKPIDEVTRDERTKAKRANFGII--------------YGITVF 764 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A + +++ + + +V Sbjct: 765 GLAERLNIE------------------------------RNEAKQLIEGYFSTFPQVQAY 794 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + +Q N + R D+ + + Sbjct: 795 MEQCKETAKQ--------------------------NGYVETFMHRRRYLADINSQNA-- 826 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 T R +Q + DI+ M+ + ++L VHDE+ Sbjct: 827 -TVRGYAERNAINAP------IQGSAADIIKLAMVRIYERFNNEGIKSKMILQVHDELNF 879 Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + M + +A +PL A+ + Sbjct: 880 SVLPNEKEQVEKIVLEEMQNA--FALKVPLIADAGWGANW 917 >gi|332526049|ref|ZP_08402187.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2] gi|332109892|gb|EGJ10520.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2] Length = 915 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 108/705 (15%), Positives = 206/705 (29%), Gaps = 168/705 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + ID ET S + ++ +F + H + Sbjct: 340 VAIDTETDSLEPMK----------ARIVGISFAVEPGRGAYVPLAHAGPDAPEQLPLDAV 389 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKA 111 LK LE+ + N ++R V + + R T++ + P +L++ Sbjct: 390 LARLKPWLEDASRAKLGQNLKYDRHVFANA-GIALAGVR-HDTMLESYVLEAHKPHSLES 447 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E P + EY D + + Sbjct: 448 LAERH------------LGRKGLSYEDLCGKGVNQIPFAQVDVARATEYSAEDSEMALHV 495 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E + + I G VD ++ + L+Q Sbjct: 496 HQVLWPEIEADAGLRRVYEAIEMPVAEVLARIERHGVLVDPQELARQSRDLAERMVALEQ 555 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQV 276 E+ ++ + +++ LF + GL ++ T +T + VL+ P ++ Sbjct: 556 EVYAIAEQP-FNLGSPKQIGEILFGKLGLPVKKRTASGAPSTDEDVLTELAADYPLPARI 614 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 +R ++ + L +N GR+ A TGR + QN+P + Sbjct: 615 LEHR-SLAKLKGTYTDKLPAMVNPATGRVHTNYAQAVA-VTGRLASNEPNLQNIPIRTPE 672 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 VR +A G ++ AD + IE R++A ++ + Sbjct: 673 GRR-------------------------VRRAFVAPPGHVILSADYSQIELRIMAHISED 707 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L+AF G D++ T A F + A+VT +QR Sbjct: 708 EGLLRAFSEGLDVHRATAAEVFGMPLAEVTSEQRRYA--------------KVINFGLIY 753 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A A + + + + Sbjct: 754 GMG------------------------------AYGLAANLGIEQKAAKDYIDRYFARFA 783 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V +E ++ + GR L ++ + Sbjct: 784 GVKRYMDETRVRAKE--------------------------KGYVETVFGRRLWLPEINS 817 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVH 629 + R+ +Q + D++ M+ K +V+ VH Sbjct: 818 GNGPRRS---GAERQAINAP------MQGTAADLIKLAMIAVQKELDASGRATRMVMQVH 868 Query: 630 DEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E P+ + A + LM A +PL AE + Sbjct: 869 DELVLEVPEAELDWAKDAIPRLMAGVA--ALKVPLLAEVGVGANW 911 >gi|237654465|ref|YP_002890779.1| DNA polymerase I [Thauera sp. MZ1T] gi|237625712|gb|ACR02402.1| DNA polymerase I [Thauera sp. MZ1T] Length = 939 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 108/708 (15%), Positives = 196/708 (27%), Gaps = 172/708 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------------- 50 D ET S + ++ +F + H Sbjct: 361 AFDTETTSLDPMA----------ARLVGMSFAVEPGEAAYLPLAHRGAAQLPEAPEQLPL 410 Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSA 108 + L+ E+ + N ++ VL + + TL+ + Sbjct: 411 DEVLDRLRPWFESDRHAKLGQNLKYDAHVLANH-GIALRGIA-HDTLLESYVLESDKAHD 468 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + ++ + G I + EY D VT Sbjct: 469 MDSLAKRH--------LGLATIPY----TEVCGKGAKQIGFDEVDVARATEYAAEDADVT 516 Query: 169 REIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + + L P E + + Q + G +D L ++ + Sbjct: 517 LRLHQHLCPQLQALPQLEALYRELEMPVLGVLQRMERTGVLIDPFLLGQHSEELGRRLYT 576 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273 L+ E +L + ++L LF + GL + T +T + VL + P Sbjct: 577 LEGEAHALAGQP-FNLGSPKQLGEILFGKLGLPVVKKTATGQPSTDEEVLEKLAEDYPLP 635 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + +R S+ + L +N GR+ + A TGR S QN+P Sbjct: 636 KLLLEHR-GLSKLKSTYADKLPRMVNPRTGRVHTSFSQATA-VTGRLSSSEPNLQNIPIR 693 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +R+ IA +V AD + IE R++A + Sbjct: 694 TPEGRR-------------------------IRAAFIAPRDHLIVSADYSQIELRIMAHL 728 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + L+AF GED++ T F VAPA+VT +Q Sbjct: 729 SDDARLLEAFARGEDVHRATAGEVFGVAPAEVTSEQ------------------------ 764 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + NF + A A + + Sbjct: 765 --------------------RRYAKVINFGLIYGMSAHGLAKNLGIERAAAQAWIDRYFA 804 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ V+E + + + GR L D Sbjct: 805 RYPGVAEYMDRTRAEARE--------------------------QGYVETVFGRRLYLPD 838 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVL 626 + +++ R +Q + D++ + M+ +VL Sbjct: 839 IRASQAGRR---AGAERAAINAP------MQGTAADLIKKAMIATDAWLASCGLKSKLVL 889 Query: 627 TVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E P + L LM + +PL E + Sbjct: 890 QVHDELVLEVPGAELETVREELPRLMGGVAT--LKVPLLVEVGAGDNW 935 >gi|283787470|ref|YP_003367335.1| DNA polymerase I [Citrobacter rodentium ICC168] gi|282950924|emb|CBG90601.1| DNA polymerase I [Citrobacter rodentium ICC168] Length = 928 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 207/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++T ++ +F + HD Sbjct: 353 AFDTETDSLDNIT----------ANLVGLSFAVEPGVAAYVPVAHDYLDAPDQIARDRAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ V+ V N ++R +L +++ T++ + +V Sbjct: 403 ELLKPLLEDEKVSKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILN------SVAG 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 455 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H ++ + + +L+Q+ Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVMIDPAVLHKHSEEITLRLAELEQKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I + +V AD + IE R++A ++ ++ L Sbjct: 689 ------------------------IRQAFIPPKDHVIVSADYSQIELRIMAHLSRDKGLL 724 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT +QR K + G++ Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLETVTNEQRRSAKAINF--------------GLIYGMS- 769 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + ++ + +++ V E Sbjct: 770 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 800 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNGA 834 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 + +Q + DI+ M+ + +++ VHDE+V Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDGWLESEQPRVRMIMQVHDELV 885 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E D ++ LM + +PL E + + Sbjct: 886 FEVHKDDLDVVSKKIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA] gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA] gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400] Length = 891 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 104/705 (14%), Positives = 198/705 (28%), Gaps = 168/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54 +D ET S L + ++ + F DH H + Sbjct: 315 SVDLETTSLNPL----------EADIVGISLSFRDHEACYIPVGHAYDGAPAQLDRTLVL 364 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 + L+ L + V V N ++ VL+ + + W T+V + L + Sbjct: 365 EGLRPLLTDPAVRKVGQNLKYDYQVLRRH-GIVMA-GVWCDTMVASYLINPVRSGHGLDS 422 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + +I+ E R Y D + Sbjct: 423 LAVEH--------LDHRMISY----EEVAGKGKDQLNFARVPVEKASTYSCEDADAAWLL 470 Query: 172 FKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + P E L + + G +D+AL L+ + + T L+++ Sbjct: 471 HRLFLPRVAEAGMERLFFDLEMPLVPILAEMETAGVKLDLALLGELSAGLGSQLTALEEQ 530 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQV 276 + +L + ++L LF + L T+ +T L + + Sbjct: 531 VMAL-APEPFNLNSPKQLGEVLFEKMKLPAGKKTKTKTGWSTNVEELERLAEAGHEIAAA 589 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 ++ + L ++ GR+ + + TGR S QN+P + Sbjct: 590 ILRYRGLAKLKSTYTDALPRLVHPASGRVHTSYNQ-TVTNTGRLSSSEPNLQNIPVRTDE 648 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + +R IA EG ++ AD + IE RVLA ++ + Sbjct: 649 GRK-------------------------IRRAFIAEEGHLILSADYSQIELRVLAHLSED 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AF ED++ T A F + P VT + R Sbjct: 684 RVFCDAFARDEDIHTRTAAEVFGLFPEMVTPEMRRQA----------------------- 720 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 A NF + A + + + +H Sbjct: 721 ---------------------KAINFGVIYGQGAFSLAKQLGITTKVAKEFIDNYFARHP 759 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + + G GR L D+ + Sbjct: 760 GARAFLDGC---VAEAEARGYVTTL-----------------------MGRRLPIPDIAS 793 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVH 629 + + ++ +Q + DI+ M+ T+ +++ VH Sbjct: 794 SNGNIRAFAQRN---------AVNYPIQGSAADIIKAAMVRVTERMRREGLTSRLIMQVH 844 Query: 630 DEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E P+ + L M +PL+A+ + + Sbjct: 845 DELVFEVPEGERTAMERLVQHEMEHAAP--LRVPLRADVNVGRNW 887 >gi|149912695|ref|ZP_01901229.1| DNA polymerase I [Roseobacter sp. AzwK-3b] gi|149813101|gb|EDM72927.1| DNA polymerase I [Roseobacter sp. AzwK-3b] Length = 938 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 96/715 (13%), Positives = 200/715 (27%), Gaps = 178/715 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------ 51 + +D ET S ++ ++ + + H Sbjct: 353 VAVDTETTSLNEM----------QAALVGISLAVEPGRACYIPLRHTEGASGDLFSSDAL 402 Query: 52 --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 + LK LE+ + + N ++ + I + + T++++ + Sbjct: 403 AEGQLDLDAVLGALKPMLEDDAILKIGQNMKYDAKIFARH---GIRVAPFDDTMLMSYAL 459 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + E S + KEL+ R +Y Sbjct: 460 NAGIHGHGMDTLSERY--LSHQPIPIKELL----------GTGKSAVTFDRVPVADAVKY 507 Query: 161 CKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T ++ +P +E + L + + G VD ++ Sbjct: 508 AAEDADITLRLWHVFKPQLHREKVTTVYETLERPLSPVLAQMERNGIKVDRETLSRMSGK 567 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266 + +L++E+ L + ++L LF E GL +T T VL Sbjct: 568 FAQKMAQLEEEIHELAGRK-FNVGSPKQLGEILFDEMGLDGGKRGKTGAYATGADVLEDL 626 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFP 325 +V + S+ + L + ++ D GR+ + GA+ TGR + Sbjct: 627 ATEHDLPARVL-DWRALSKLKSTYTDALQDHIDPDTGRVHTSYVQTGAT-TGRLASTDPN 684 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S +R +A G LV D + IE Sbjct: 685 LQNIPVRSEEGRR-------------------------IREAFVAEPGNVLVSLDYSQIE 719 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A +AF G+D++ T + F+V ++T + R K + Sbjct: 720 LRILAHIADIDALRQAFRDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAIN--------- 770 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ A + Sbjct: 771 -----FGVIYGIS------------------------------GFGLARNLRIPRGEAQG 795 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + ++ + ++ ++ + + Sbjct: 796 FIDRYFERFPGIKTYMDKTVDFAKE--------------------------HGFVQTLFN 829 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621 R + ++ S R +Q + DI+ M+ Sbjct: 830 RKIHTPEI----SAKGPRAGFARRAAINAP------IQGTAADIIRRAMIRMPAAIEGMP 879 Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAK--GLPLKAEGYESKRY 673 ++L VHDE++ E + +M + A +PL + + + Sbjct: 880 AKMLLQVHDELIFEVEAGAADALIATARDVMEAAADPAVKIDVPLVVDAGQGANW 934 >gi|82778962|ref|YP_405311.1| DNA polymerase I [Shigella dysenteriae Sd197] gi|309783771|ref|ZP_07678417.1| DNA polymerase I [Shigella dysenteriae 1617] gi|81243110|gb|ABB63820.1| PolA [Shigella dysenteriae Sd197] gi|308928354|gb|EFP73815.1| DNA polymerase I [Shigella dysenteriae 1617] Length = 928 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T + + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTRLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELER 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLSDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + DI+ M+ +++ VHD Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E D + ++ LM + +PL E + + Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|292897759|ref|YP_003537128.1| DNA polymerase I [Erwinia amylovora ATCC 49946] gi|291197607|emb|CBJ44701.1| DNA polymerase I [Erwinia amylovora ATCC 49946] Length = 929 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 108/706 (15%), Positives = 207/706 (29%), Gaps = 170/706 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S L+ +I +F HD + Sbjct: 353 AFDLETDSLDTLS----------ANIIGISFATAPGEAAYLPVAHDYLDAPEQLDRSDVL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL---PSALK 110 LK LE+ V N F+R VLK DI + T++ + + + Sbjct: 403 ARLKPLLEDPQSQKVGQNLKFDRGVLKRY---DIELLGIRFDTMLESYALNSVAGRHDMD 459 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + L + E ++ A Y D VT + Sbjct: 460 TLASR------------WLQHKTVTFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQ 507 Query: 171 IFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + ++ P KEQ L + I G +D ++ +Q + +L+ Sbjct: 508 LHLKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQSILAVHSQELGSRLAELE 567 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 + L + ++L+T LF + G+ T +T + VL+ P Sbjct: 568 LKAHELAG-EPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKV 626 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +R ++ + L +N T + TGR S QN+P + Sbjct: 627 ILEHR-GLAKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDE 685 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA +G +++ AD + IE R++A ++ + Sbjct: 686 GRR-------------------------IRQAFIAPQGHRILAADYSQIELRIMAHLSQD 720 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF + +D++ T A F VA +V+ +QR K + Sbjct: 721 KGLLSAFASEQDIHRATAAEVFGVALDKVSGEQRRSAKAINF--------------GLIY 766 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + + ++ + +++ Sbjct: 767 GMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFERYP 796 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + + Q + GR L D+ Sbjct: 797 GVLQYMESTRELAAQ--------------------------KGYVSTLDGRRLYLPDINA 830 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTV 628 + + + R +Q + DI+ M+ +++ V Sbjct: 831 SNAMRR---KAAERAAINAP------MQGTAADIIKRAMIAVDSWLEQQPSPEVKMIMQV 881 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E A + + LM + +PL+ + + Sbjct: 882 HDELVFEVQADAVEAACAQIRALMEGSMK--LDVPLRVDIGVGDNW 925 >gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D] gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D] Length = 937 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 104/710 (14%), Positives = 193/710 (27%), Gaps = 169/710 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------- 50 + ID ET S + ++ + H Sbjct: 355 DLVCIDTETTSIDPML----------AQLVGISLSVKPGEACYIPVAHRGPDVAGLDAAA 404 Query: 51 ----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL 105 + +K LE+ V + ++ V DI + T++ + Sbjct: 405 QLSRDTVLARMKLWLEDESRKKVGQHLKYDAHVFANH---DIALRGIEHDTMLESYVLES 461 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 A ++ K + Y D Sbjct: 462 HRNHGMDALAERVLHLKTITYEA----------VCGKGASQIGFDEVPLDRATAYAAEDA 511 Query: 166 TVTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 VT + + L P E + Q + G +D + + + Sbjct: 512 DVTLRLHRTLFPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDADRLAKQSNELGLR 571 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLT 270 +L+ E L + +++ F + L + T +T + VL + Sbjct: 572 LIELEAEAHKLAGQP-FNLGSPKQIGDIFFNQMKLPVIKKTASGAPSTDEEVLQKLAEDY 630 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 P + + R ++ + L + +N T + TGR + QN+P Sbjct: 631 PLPKLLLDYR-GLAKLKSTYTDKLPKMVNPRTGRVHTTYGQATAVTGRLASTDPNLQNIP 689 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 + +R IA EG +V AD + IE R++A Sbjct: 690 VRTEEGRR-------------------------IREAFIAPEGSVIVSADYSQIELRIMA 724 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ ++ ++AF G+D++ T A FNV P +VT DQR + KV+ Sbjct: 725 HLSQDEGLMRAFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINF------------- 771 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 G++ A A + + Sbjct: 772 -GLIYGMS------------------------------AFGLASNLGIGRDAAKLYIDRY 800 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 ++ + E Q+ + + + GR L Sbjct: 801 FARYPGAANYMEETRQSARE--------------------------HGYVETVFGRRLWL 834 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDI 624 D+ R +Q + D++ M+ + Sbjct: 835 PDINGGNGPRRQA---AERAAINAP------MQGTAADLIKLSMLAVQGWLEAEAMRSRL 885 Query: 625 VLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V+ VHDE+V E P + L LM S + +PL AE + Sbjct: 886 VMQVHDELVLEVPQDELAVVRERLPELMCSVAT--LRVPLVAEVGVGANW 933 >gi|197263783|ref|ZP_03163857.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242038|gb|EDY24658.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 928 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ V V N ++R VL+ +++ T++ + +V Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H ++ + + +L+++ Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT +QR K + G++ Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + ++ + +++ V E Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ + Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + +Q + DI+ M+ +++ VHDE+V Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E D + ++ LM + +PL E + + Sbjct: 886 FEVHKDDLNAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|126724960|ref|ZP_01740803.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150] gi|126706124|gb|EBA05214.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150] Length = 931 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 95/716 (13%), Positives = 201/716 (28%), Gaps = 178/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---------- 52 + +D ET S ++ ++ + + +H Sbjct: 345 HVAVDTETTSLNEMR----------AELVGISLCVEAGIACYIPLIHKAAASDDLFGSAD 394 Query: 53 ----------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 + +LK LE+ V + N ++ + + + + T++++ + Sbjct: 395 LAEGQLDTNVVLDLLKPVLEDPAVLKIGQNMKYDAKIFARY---GVKVAPFDDTMLMSYA 451 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 ++ ++ E G I+ +T + + Sbjct: 452 QNAGKHNHSMDSLSERY--------LGHSPISI----KTLLGTGKSAITFDKVPVADAVK 499 Query: 160 YCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D VT +++ L PL E+ L + + G VD ++ Sbjct: 500 YAAEDADVTLRLWQFLGPLLHIEKVTKVYERMERPLVPVLAEMEMHGIKVDRDTLSRMSN 559 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSS 265 + L+ E+ + ++L LF + L + +T +L Sbjct: 560 AFAQKMAGLEAEIHEKAGQS-FNVGSPKQLGEILFDKLELPGGKKGKTGAYSTGADILED 618 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVF 324 V + R S+ + L + +N GR+ + GA+ TGR + Sbjct: 619 LATEHELPALVLDWRQ-LSKLKSTYTDALQDHINAETGRVHTSYSIAGAN-TGRLASTDP 676 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P S +R +A EG L+ D + I Sbjct: 677 NLQNIPIRSEEGRR-------------------------IREAFVAEEGNVLLALDYSQI 711 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA +A +AF G D++ T ++ FNV + R K + Sbjct: 712 ELRILAHVAKIDALKEAFYNGVDIHALTASQMFNVPLEGMDPMVRRQAKAINF------- 764 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 G++ A + Sbjct: 765 -------GVIYGIS------------------------------GFGLARNLRIPRAEAQ 787 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + ++ + +E + ++ + + Sbjct: 788 AFINTYFERFPGIRTYMDETVEFAKE--------------------------HNFVQTLF 821 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKA 620 GR + D+ R +Q + D++ M+ Sbjct: 822 GRKIHTPDINAK----GPGAGFAKRAAINAP------IQGTAADVIRRAMIRMPAAIKDL 871 Query: 621 GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWA--KGLPLKAEGYESKRY 673 ++L VHDE+V E + + + + +M + A +PL + + + Sbjct: 872 PAKMLLQVHDELVFEVAEDAVEDVTNAVRKVMENAAEPAIKLTVPLTVDAGQGANW 927 >gi|261342936|ref|ZP_05970794.1| hypothetical protein ENTCAN_09533 [Enterobacter cancerogenus ATCC 35316] gi|288314684|gb|EFC53622.1| DNA polymerase I [Enterobacter cancerogenus ATCC 35316] Length = 930 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 109/702 (15%), Positives = 214/702 (30%), Gaps = 163/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F HD + Sbjct: 355 AFDTETDSLDNIS----------ANMVGLSFATAPGVAAYVPVAHDYLDAPDQIPRDRVL 404 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 +++K LE+ V N F+R +L+ +++ T++ + L +V Sbjct: 405 ELMKPVLEDDKALKVGQNLKFDRGILQNY-GIELRGIA-FDTMLESYI------LDSVAG 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 457 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 513 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K L + I G +D + H + + T+L+Q+ Sbjct: 514 MWPKLQKHEGPLNVFQHIEMPLVPVLSRIERNGVKIDPTVLHNHSGELAQRLTELEQKAH 573 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 L + ++L+T LF + G+ T +T + VL P + Sbjct: 574 ELAG-EPFNLSSPKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILQY 632 Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L +N GR+ + A+ TGR S QN+P + Sbjct: 633 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVAA-TGRLSSTDPNLQNIPVRNEEGRR 690 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA + +V AD + IE R++A ++ ++ Sbjct: 691 -------------------------IRQAFIAPDDYLIVSADYSQIELRIMAHLSRDKGL 725 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A F + VT +QR K + G++ Sbjct: 726 LTAFAEGQDIHRATAAEVFGLPLESVTNEQRRSAKAINF--------------GLIYGMS 771 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + ++ + +++ V Sbjct: 772 ------------------------------AFGLSRQLNIPRKESQKYMDLYFERYPGVL 801 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E ++ + GR L D+ ++ + Sbjct: 802 EYMERTRAQAKE--------------------------KGYVETLDGRRLYLPDIKSSNA 835 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEI 632 + +Q + DI+ M+ K +++ VHDE+ Sbjct: 836 ARRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLEKEKPRVKMIMQVHDEL 886 Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E D S ++ LM ++ + +PL E + + Sbjct: 887 VFEVHKDDLEAVSRKIHELMENSMT--LDVPLLVEVGSGENW 926 >gi|332559502|ref|ZP_08413824.1| DNA polymerase I [Rhodobacter sphaeroides WS8N] gi|332277214|gb|EGJ22529.1| DNA polymerase I [Rhodobacter sphaeroides WS8N] Length = 937 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 103/715 (14%), Positives = 196/715 (27%), Gaps = 176/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + ID ET S ++ ++ + + H Sbjct: 351 HVAIDTETTSLDEMR----------AELVGISLCVEAGAACYIPLGHRAGGGDLFGASEL 400 Query: 51 --PVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 MP +LK LE+ + + N ++ +L I + T++++ + Sbjct: 401 VADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKILARH---GIRVAPIDDTMLMSYAM 457 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + + K K L+ R Y Sbjct: 458 HAGRHGHGMDELCDTY--LGHKPIAIKTLL----------GSGKSQITFDRVPVEQAVCY 505 Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D VT ++K +P + E+ L + + G VD ++ Sbjct: 506 AAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMSNA 565 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266 + L+ E+ +L G + ++L LF + GL + T VL Sbjct: 566 FAQKMAGLEAEIHALAGGP-FNVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDL 624 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFP 325 + + S+ + L E ++ + GR+ + GA+ TGR + Sbjct: 625 AAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPN 683 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S +R +A GK LV D + IE Sbjct: 684 LQNIPVRSEEGRR-------------------------IREAFVAPPGKLLVSLDYSQIE 718 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A +AF G D++ T + FNV + R K + Sbjct: 719 LRILAHIADIPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAIN--------- 769 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ A + Sbjct: 770 -----FGVIYGIS------------------------------GFGLARNLRIPRADAQG 794 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + ++ + +E + N + G Sbjct: 795 FIDRYFERFPGIRGYMDETIAFAK--------------------------ANGHVETLFG 828 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621 R + ++ R +Q + D++ M+ KA Sbjct: 829 RRINTPEINAK----GPGAGFARRAAINAP------IQGTAADVIRRAMIRMPKAIRGMP 878 Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + + +M P+ +PL E + Sbjct: 879 ATMLLQVHDELLFEVEEKAADALIERVREVMEGAADPAVKLTVPLTVEAGRGLNW 933 >gi|114777011|ref|ZP_01452031.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1] gi|114552532|gb|EAU54992.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1] Length = 917 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 108/709 (15%), Positives = 193/709 (27%), Gaps = 172/709 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 + +D ET S A D ++ +F H Sbjct: 336 IALDTETTSLQ----------AHDAELVGLSFATRAGEAWYIPVGHRSTDLLVPAPQQLP 385 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106 + LK LE+ HN ++ VL+ +++ +++LA P Sbjct: 386 LQHVLAALKPLLEDAAKRKCGHNLKYDAQVLRRA-GIELAGIA-ADSMLLAYCLYPAKYP 443 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 +L +V E L + + Y D Sbjct: 444 PSLDSVAEDY------------LNYHCTPYSEVAGKGAKQVCFDEVPVSIATPYACEDAD 491 Query: 167 VTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 + + L E L + I G VD + L+ + Sbjct: 492 IALRLTGLLSAQLLTEGRLTRHDEIELPLSQVLADIEWTGAHVDAEMLAGLSTGFGLRIA 551 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQ 272 +L+ ++ + + + ++L LF + T++ T Q VL Sbjct: 552 ELESQIHAAAG-EKFNIQSPKQLGVLLFETLAIPGGKKTKSGQWATGQEVLEKLADEHEV 610 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + R ++ + L + ++ + GR+ + + TGR S QN+P Sbjct: 611 PRLILQVRQ-LAKLKSTYTDALPKLIHRTTGRVHTSFNQAITT-TGRLSSSDPNLQNIPI 668 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 S E +R IA EG L+ AD + IE R++A Sbjct: 669 RSAEGRE-------------------------IRKAFIAEEGHTLLAADYSQIELRLMAH 703 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +G+ AF GED++ T A +A V+ + R K + + Y A Sbjct: 704 FSGDAALCAAFANGEDIHAATAAAVNGIALEDVSGEMRRRAKAINFGILYGMSA-----F 758 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 LN++ ++ E + F E + Sbjct: 759 GLAKQLNISRGEAQTFIDTYFERYPSVRGFMDDTLVLAREQGYVETL------------- 805 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 R VP + +G Y Sbjct: 806 ----------------------------LGHRVYVPEISSS-----------NGMRRAY- 825 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625 R Q + DI+ M++ + I+ Sbjct: 826 ---------------AERTAINAPL------QGSAADIIKVAMIHLHRRLRQEAPAAAII 864 Query: 626 LTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 L VHDE++ E P S + M + +PL + + Sbjct: 865 LQVHDELIVEAPVDQIDAVSAIMRQTMEQAVT--LEVPLTVDIGSGHSW 911 >gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter sp. FRC-32] gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter sp. FRC-32] Length = 891 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 109/707 (15%), Positives = 197/707 (27%), Gaps = 169/707 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------V 52 ID ET S + ++ +F F DH H Sbjct: 314 IFAIDLETTSLNPF----------EAEIVGISFSFSDHQAYYIPVAHHYLGVPDQLSLAH 363 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSAL 109 + Q L+ L + + + N ++ VL+ +++ W T++ + L Sbjct: 364 VLQALRPLLLDPAIKKIGQNIKYDYQVLRRA-GIEMEGI-WCDTMLASYLLNPNRSSHGL 421 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 A+ L ++I+ K + Y D T Sbjct: 422 NALAVEL--------LDHKMISY----ADVAGSGKDQKNFAQVEVEKASIYSCEDADATW 469 Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + K P + E L + + G +D+ L L+ + +L+ Sbjct: 470 LLHKLFLPQIEESGMERLLFELEMPLVKILAEMELYGVKLDLVLLQKLSAGFGSQLAELE 529 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAI 274 +E+ + ++L LF L T+ +T L Sbjct: 530 REIFQCAGTT-FNINSPKQLGEVLFEHLQLPCGKKTKTKTGWSTNVDELERLAAEHEIGR 588 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + R S+ + L + + S+ GR+ + + TGR S QN+P S Sbjct: 589 LILQYR-SLSKLKSTYTDALPKLVYSESGRIHTSYNQAV-TNTGRLSSSEPNLQNIPIRS 646 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R IA EG ++ AD + IE RVLA ++ Sbjct: 647 EEGR-------------------------SIRHAFIAEEGCLILSADYSQIELRVLAHLS 681 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ AF ED++ T A F + P VT + R K + Sbjct: 682 QDRVFCDAFAKDEDIHTRTAAEVFGLFPGMVTPEMRRQAKTIN--------------FGV 727 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G + A E + + + Sbjct: 728 IYGQGPFSL------------------------------AKELGVSTKVAKEFIDNYFDR 757 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 H+ + + G GR L D+ Sbjct: 758 HAGARVFLDGC---VREAEAKGHVTTIL-----------------------GRRLPIPDI 791 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627 + R +Q + DI+ + M+ +++ Sbjct: 792 NSTN---GNIRSFAQRNAI------NYPIQGSAADIIKQAMVRVSGRMRREGLKSRLIMQ 842 Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E P ++ L H M + + +PLK + + Sbjct: 843 VHDELVFEVPLEEKLTMEKLVCHEMENALT--LRVPLKVDVNFGSNW 887 >gi|82701702|ref|YP_411268.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196] gi|82409767|gb|ABB73876.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196] Length = 905 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 102/702 (14%), Positives = 199/702 (28%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 +D ET + ++ +F + H H + Sbjct: 331 SLDTETTGLDPMR----------AELVGISFSVEPHHGAYIPLGHRYTGVPRQLPLDFVL 380 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + LK L + + N F+R V + + TL+ + Sbjct: 381 EKLKPWLTDPSAPKLGQNLKFDRHVFANH-GIGLKGI-VHDTLLQSYVFESHRPHDMDNL 438 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K E + +Y D VT ++ + Sbjct: 439 ALRHLGIKTITYDE----------VTGKGAARIGFEQVDIERAAQYAAEDADVTLQLHQH 488 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L + E + + + G +D+ L T ++ + + L++ Sbjct: 489 LYAEVGKDAKLDHIYRTLEMPVMDVLFEMERNGVLLDIKLLETQSRELGEKMLALEERAC 548 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 ++ L + ++++ LF L + T + T + VL P A + + Sbjct: 549 TIAG-LPFNLNSPKQIQEILFDRLKLPVMKKTPSGVPSTDEDVLQKLALDYPLARALLDY 607 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L ++ GR+ A TGR + QN+P + Sbjct: 608 R-GLAKLKSTYTDKLPRMVHPVTGRVHTNYAQAVA-VTGRLASNEPNLQNIPIRTAEGRR 665 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA G +++ AD + IE R++A ++ + Sbjct: 666 -------------------------IREAFIAPSGYRIISADYSQIELRIMAHISQDAGL 700 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 LKAF GED++ T + F V V +QR K++ G++ Sbjct: 701 LKAFAQGEDIHRATGSEIFGVPLETVNSEQRRYAKIIN--------------FGLIYGMS 746 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A A + ++ V+ Sbjct: 747 EFGLATQ------------------------------LGIERAAARTYMDRYFSRYPGVA 776 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + N + GR L ++ ++ Sbjct: 777 DYMQRTRKTARE--------------------------NRYVETVFGRRLWLSEINSSNG 810 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 R +Q + DI+ M+ + +V+ VHDE+ Sbjct: 811 MRRQA---AERAAINAP------MQGTAADIIKLAMIEVHDWLRRHELRSKLVMQVHDEL 861 Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E P+ + L LM + +PL E + Sbjct: 862 VLEVPENEIETIKRELPLLMGNVAQ--LQVPLLVEVGVGPNW 901 >gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 919 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 108/731 (14%), Positives = 216/731 (29%), Gaps = 192/731 (26%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53 + +D ET + ++ ++ +FG + H + Sbjct: 318 KLVAVDTETDNLDSMS----------ANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 367 Query: 54 --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 LK LEN DV + N ++ T+ Sbjct: 368 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH---G 424 Query: 88 IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + + T++ + + + + + G + I E Sbjct: 425 VQVEGVAFDTMLESYTLNSTGRHNMDELADRY--------LGHKTIEF----EEIAGKGK 472 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTIN 193 + A + +Y D VT ++ + L P E L + I Sbjct: 473 NQLTLDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIE 532 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +D + ++ +L+Q + S V + ++L+ LF + GL + Sbjct: 533 RNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAG-EVFNLASTKQLQEILFTKLGLPVLK 591 Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTL 308 T +T + VL ++ S+ + L +N GR+ + Sbjct: 592 KTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY 651 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + TGR S QN+P + +R Sbjct: 652 HQAV-TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAF 685 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA +G K+V AD + IE R++A +A ++ + AF G+D++ T A F +A QVT +Q Sbjct: 686 IARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQ 745 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + L G++ ++ Sbjct: 746 RRSAKAINFGLI--------------YGMSEFGLSNQ----------------------- 768 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 ++ + + Q++ V + ++ ++ Sbjct: 769 -------LGISRADAKKYMERYFQRYPAVQQFMTDIRESA-------------------- 801 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + GR L ++ ++ + + R +Q + D Sbjct: 802 ------SEKGYVETLFGRRLYLPEIKSSNAMRR---KAAERVAINAP------MQGTAAD 846 Query: 609 ILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLP 662 I+ M+ KA +++ VHDE+V E + + ++ M +P Sbjct: 847 IIKVAMIGIDKAIRGDDNIKMIMQVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVP 904 Query: 663 LKAEGYESKRY 673 L AE + Sbjct: 905 LIAEVGVGDNW 915 >gi|312795716|ref|YP_004028638.1| DNA polymerase I [Burkholderia rhizoxinica HKI 454] gi|312167491|emb|CBW74494.1| DNA polymerase I (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 927 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 107/703 (15%), Positives = 199/703 (28%), Gaps = 166/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 353 SFDTETTSLDPMR----------ARIVGVSFATEPGRAAYVPLAHRGPDHPVQLPRDEVL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112 LK LE+ V + ++ VL + + + TL+ + P + + Sbjct: 403 ARLKPWLESPAHKKVGQHLKYDAQVLASH-GITLAGIE-HDTLLESYVLESHRPHDMDNL 460 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 L + K E + + EY D +T + Sbjct: 461 ATRH------------LGVKTIKYEDVAGKGAAQIGFDEVSVDVATEYSAEDADITLRLH 508 Query: 173 KRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P E + Q I G +D + + + +L E Sbjct: 509 QVLYPQIQVEKGLDYVYRSIELPTARVLQIIERNGVLIDKDRLVAQSNELGIRMLELQAE 568 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 +L G + +++ F + L + T + T + VL + P + Sbjct: 569 AYALAGG-EFNLNSPKQIGEIFFQQLQLPVVKKTPSGAPSTDEDVLQKLAEDYPLPKVLL 627 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + R ++ + L + +N D T + TGR + QN+P + Sbjct: 628 DYR-ALTKLKSTYTDKLPKMINPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTPEGR 686 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R IA G +V AD + IE R++A ++G+ Sbjct: 687 R-------------------------IREAFIAPPGSSIVSADYSQIELRIMAHISGDAS 721 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + AFE GED++ T + F V +VT +QR I KV+ G+ Sbjct: 722 LMAAFEHGEDVHRATASEIFGVTRQEVTSEQRRIAKVIN--------------FGLIYGM 767 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A A + + ++ V Sbjct: 768 S------------------------------AFGLASNLGIARDAAKLYIDRYFARYPGV 797 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + +E + + GR L ++ Sbjct: 798 ARYMDETRMEAKSC--------------------------GFVQTVFGRRLWLPEINGGN 831 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631 R +Q + D++ M+ + +++ VHDE Sbjct: 832 GPRRQA---AERAAINAP------MQGTAADLIKLSMITVQDWIERARVKSRLIMQVHDE 882 Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E PD + + + LM S +PL AE + Sbjct: 883 LVLEVPDDELEIIRAKVPELMCSVAQ--LNVPLVAELGTGANW 923 >gi|71901326|ref|ZP_00683422.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71728910|gb|EAO31045.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 272/726 (37%), Positives = 366/726 (50%), Gaps = 63/726 (8%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L+ D ET SP+ + G+ YAE +LFA+ D PV++WDC MP+ L AL Sbjct: 10 ILWGDLETYSPVPIAH-GVHAYAEQAQRLLFAYALGDGPVQVWDCTATATMPEELSAALH 68 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121 N V + HNS+F+RTVL ++IP+ RW ++ A ++ LP AL + E L++ + Sbjct: 69 NPAVLLYFHNSHFDRTVL-RHCGINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQ 127 Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++GK L+A FCK C R + H W F +Y + DV R++ KRL + Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLPSHN 187 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 EL W+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L L G+ L D+ + T +R L + L ++ + R +AS ++ K L+ Sbjct: 248 ALLHHLSTAHGVALPDMQQHTVERCL-DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S + I + D Sbjct: 307 TSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDD 366 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE-------------------- 395 + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTW 426 Query: 396 --------------------QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 + + GED+Y YA SF +AP VTK QR IGKV Sbjct: 427 HSGEAITHGALRGAPITLQWNAEHEPIRKGEDIYKRAYAHSFGIAPQAVTKQQRQIGKVQ 486 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 ELALGY GG AF A+ ++L A P ++A +W + NH Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL--PPLLLQEAVEALQWTKANHRPTFGL 544 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 AC+ K+AWR H ++ W L A I + + + ++ + Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599 Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDI 609 L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+ Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669 LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG+E Sbjct: 660 LAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFE 719 Query: 670 SKRYRK 675 + RYRK Sbjct: 720 THRYRK 725 >gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9] gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9] Length = 937 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 99/708 (13%), Positives = 202/708 (28%), Gaps = 168/708 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 + D ET S +T ++ +F ++ HD Sbjct: 358 DVVAFDTETDSLDYMT----------ANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRD 407 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + LK LE+ V N F+ ++L ++++ ++ T++ + Sbjct: 408 WVLAQLKPLLEDPAQNKVGQNLKFDMSILARY-DINMQGIKY-DTMLESYVFNSVVGRHD 465 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + ++ L + E + ++ + G Y D +T Sbjct: 466 MDSLALRY------------LEHKNISFEEVAGKGKKQLTFNQIDLDVAGPYAAEDADIT 513 Query: 169 REIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + L E L + I G +D L + + + Sbjct: 514 LRLHNLLNEKVESDEQLKSVFEDIEMPLVPVLSRIERTGVLIDSMLLSAQSTEIAARLDE 573 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQA 273 L+ + + + ++L+ LF + GL + T + T + VL P Sbjct: 574 LETKAYEI-AEQEFNLSSPKQLQAILFEKMGLPILKKTPSGAPSTNEEVLQELALDYPLP 632 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + R ++ + L + +N T + TGR S QN+P + Sbjct: 633 KILLEYR-GLAKLKSTYTDKLPKMVNPSTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRN 691 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R IA G K++ D + IE R++A ++ Sbjct: 692 AEGRR-------------------------IRQAFIAPTGYKILAVDYSQIELRIMAHLS 726 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ L+AF+ G+D++ T A + VT +QR K + Sbjct: 727 GDKALLEAFKQGKDIHAATAAEILGLPIESVTTEQRRRAKAINF--------------GL 772 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ A + + + ++ Sbjct: 773 IYGMSAFGLAKQLDM------------------------------GRNEAQDYMNVYFER 802 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V E + GR L D+ Sbjct: 803 YPGVLEYMESTRIHA--------------------------SEQGYVETLFGRRLYLPDI 836 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVL 626 + + R +Q + DI+ M+ + +++ Sbjct: 837 KSRNGIRR---KAAERAAINAP------MQGTAADIIKRAMVLVDEWVEQQETGRVRLLM 887 Query: 627 TVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E +++ + + LM +PL A+ + Sbjct: 888 QVHDELVFEVQESELDAVSADVRRLMELAAE--LDVPLIADTGSGDNW 933 >gi|326625711|gb|EGE32056.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 884 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD Sbjct: 309 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 358 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ V V N ++R VL+ +++ T++ + +V Sbjct: 359 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 410 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 411 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 467 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H ++ + + +L+++ Sbjct: 468 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 527 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 528 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 586 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 587 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 644 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 645 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 680 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT +QR K + G++ Sbjct: 681 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 725 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + ++ + +++ V E Sbjct: 726 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 756 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ + Sbjct: 757 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 790 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + +Q + DI+ M+ +++ VHDE+V Sbjct: 791 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 841 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E D + ++ LM + +PL E + + Sbjct: 842 FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 880 >gi|77918206|ref|YP_356021.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380] gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380] Length = 891 Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 104/704 (14%), Positives = 200/704 (28%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54 D ET S + ++ +F H + + Sbjct: 318 AFDTETTSLVATR----------ADLVGISFAIKPGEGWYLPVGHRYLGVPEQLDRALVI 367 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 L+ + +T + +A N+ ++ VL+ L++ T++ + L Sbjct: 368 DKLRPLMADTQLAKIAQNAKYDLLVLRRA-GLEVAGLSC-DTMLASYLANPAAKSHGLDT 425 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L G I + Y D +T + Sbjct: 426 LASEL--------LGYRTIGY----TEVTGKGKKQIGFEEVEIEKATVYATEDADITLRL 473 Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 +LEP + E L + + +G +D L+ + L+ E Sbjct: 474 ADKLEPQLAETGQGELFRTVELPLVTVLSDMEWQGVRIDADFLKGLSADMKTRLATLEGE 533 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278 + L+ + ++L LF L T+ +T VL++ + P A +V + Sbjct: 534 IHELSG-RSFNVASPKQLGEVLFEHLKLPRGKKTKTGWSTDVEVLTNLAEEHPIAARVLD 592 Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R ++ + L + ++ D GR+ + + TGR S QN+P + Sbjct: 593 YR-SVAKLKSTYCDALPKLIHPDTGRIHTSFNQAV-TATGRLSSSDPNLQNIPIRTEEGR 650 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R + +EG L+ AD + +E R+LA MA E Sbjct: 651 R-------------------------IREAFVPAEGNLLLAADYSQVELRILAHMADEPA 685 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++F GED++ T + F V VT + R K + G+ Sbjct: 686 LKESFAHGEDIHARTASEIFGVFLELVTPEMRRQAKTIN--------------FGVLYGM 731 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A + + ++ +V Sbjct: 732 S------------------------------AFGLAKSLGIARKEAQTYIDNYFARYPKV 761 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 E + + GR ++ + Sbjct: 762 LEFMEAKKAEARE--------------------------KQYVTTLLGRRCAVPEIASKN 795 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631 + R +Q + DI+ M+ K +VL VHDE Sbjct: 796 GAVRGY---AERNAI------NYPIQGSAADIIKVAMLRIHERLKAEKLETKMVLQVHDE 846 Query: 632 IVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674 +V + P ++ L M +PL + + +R Sbjct: 847 LVFDMPAAEQAAVENLVREQMEHAFE--LDVPLLVDMGVGRNWR 888 >gi|213852345|ref|ZP_03381877.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 772 Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD Sbjct: 197 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 246 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ V V N ++R VL+ +++ T++ + +V Sbjct: 247 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 298 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 299 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 355 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H ++ + + +L+++ Sbjct: 356 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 415 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 416 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 474 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 475 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 532 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 533 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 568 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT +QR K + G++ Sbjct: 569 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 613 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + ++ + +++ V E Sbjct: 614 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 644 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ + Sbjct: 645 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 678 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + +Q + DI+ M+ +++ VHDE+V Sbjct: 679 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 729 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E D + ++ LM + +PL E + + Sbjct: 730 FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 768 >gi|229520098|ref|ZP_04409526.1| DNA polymerase I [Vibrio cholerae TM 11079-80] gi|229342886|gb|EEO07876.1| DNA polymerase I [Vibrio cholerae TM 11079-80] Length = 906 Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 205/703 (29%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + HD + Sbjct: 330 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 379 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 380 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 437 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ A +Y D VT + + Sbjct: 438 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 487 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G +D L +Q + + +L+Q+ Sbjct: 488 RIHPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLEQLEQKA 547 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 548 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 606 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N + T + TGR S QN+P + Sbjct: 607 YR-GLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 665 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 666 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 700 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 701 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 746 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 747 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 776 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + Q + GR L ++ + + Sbjct: 777 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 810 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 811 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 861 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S A +PL AE + Sbjct: 862 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 902 >gi|292486521|ref|YP_003529387.1| DNA polymerase I [Erwinia amylovora CFBP1430] gi|291551934|emb|CBA18971.1| DNA polymerase I [Erwinia amylovora CFBP1430] gi|312170589|emb|CBX78852.1| DNA polymerase I [Erwinia amylovora ATCC BAA-2158] Length = 891 Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 108/706 (15%), Positives = 207/706 (29%), Gaps = 170/706 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S L+ +I +F HD + Sbjct: 315 AFDLETDSLDTLS----------ANIIGISFATAPGEAAYLPVAHDYLDAPEQLDRSDVL 364 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL---PSALK 110 LK LE+ V N F+R VLK DI + T++ + + + Sbjct: 365 ARLKPLLEDPQSQKVGQNLKFDRGVLKRY---DIELLGIRFDTMLESYALNSVAGRHDMD 421 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + L + E ++ A Y D VT + Sbjct: 422 TLASR------------WLQHKTVTFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQ 469 Query: 171 IFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + ++ P KEQ L + I G +D ++ +Q + +L+ Sbjct: 470 LHLKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQSILAVHSQELGSRLAELE 529 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 + L + ++L+T LF + G+ T +T + VL+ P Sbjct: 530 LKAHELAG-EPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKV 588 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +R ++ + L +N T + TGR S QN+P + Sbjct: 589 ILEHR-GLAKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDE 647 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA +G +++ AD + IE R++A ++ + Sbjct: 648 GRR-------------------------IRQAFIAPQGHRILAADYSQIELRIMAHLSQD 682 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF + +D++ T A F VA +V+ +QR K + Sbjct: 683 KGLLSAFASEQDIHRATAAEVFGVALDKVSGEQRRSAKAINF--------------GLIY 728 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + + ++ + +++ Sbjct: 729 GMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFERYP 758 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + + Q + GR L D+ Sbjct: 759 GVLQYMESTRELAAQ--------------------------KGYVSTLDGRRLYLPDINA 792 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTV 628 + + + R +Q + DI+ M+ +++ V Sbjct: 793 SNAMRR---KAAERAAINAP------MQGTAADIIKRAMIAVDSWLEQQPSPEVKMIMQV 843 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E A + + LM + +PL+ + + Sbjct: 844 HDELVFEVQADAVEAACAQIRALMEGSMK--LDVPLRVDIGVGDNW 887 >gi|161505500|ref|YP_001572612.1| DNA polymerase I [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866847|gb|ABX23470.1| hypothetical protein SARI_03661 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 928 Score = 425 bits (1093), Expect = e-116, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 207/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ V V N ++R VL+ +++ T++ + +V Sbjct: 403 ELLKPLLEDDKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 455 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H ++ + + +L+++ Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRR- 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT +QR K + G++ Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + ++ + +++ V E Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ + Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + +Q + DI+ M+ +++ VHDE+V Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E D ++ LM + +PL E + + Sbjct: 886 FEVHKGDLDAVSKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|254466222|ref|ZP_05079633.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I] gi|206687130|gb|EDZ47612.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I] Length = 936 Score = 425 bits (1093), Expect = e-116, Method: Composition-based stats. Identities = 93/713 (13%), Positives = 195/713 (27%), Gaps = 175/713 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 + +D ET ++ ++ + + H Sbjct: 352 VAVDTETTGLDEMVV----------DLVGISLCVEAGEACYIPLAHKAGGDDLFGGEGLS 401 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 +LK+ LE+ V + N ++ +L + + T++++ + Sbjct: 402 EGQMPLEEAVAMLKDVLEDPAVLKIGQNMKYDAKILHRY---GVDVAPIDDTMLMSYALH 458 Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E K L+ R Y Sbjct: 459 AGLHGHGMDTLSERY--LDHTPIPIKPLL----------GSGKSAVTFDRVPIEDAVPYA 506 Query: 162 KGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIV 211 D +T +++ +P +E+ L + + G VD ++ Sbjct: 507 AEDADITLRLWQTFKPQLHQERVTTVYETLERPLVPVLAEMERNGIKVDRDTLSRMSNAF 566 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + L+ E+ L + +L LF + GL + +T +L Sbjct: 567 AQKMAGLEAEIHELAG-ETFNVGSPAQLGEILFDKMGLEGGKRGKNGKYSTGADILEDLA 625 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 +V + R S+ + L + +N D T + TGR + Q Sbjct: 626 TEHDLPRRVLDWRQ-LSKLKSTYTDALQDHINKDTGRVHTSYAQTGASTGRMASTDPNLQ 684 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P S +R +A EG L+ D + IE R Sbjct: 685 NIPVRSEEGRR-------------------------IREAFVAEEGNVLLSLDYSQIELR 719 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA MAG + +AF G+D++ T + F V ++T + R K + Sbjct: 720 ILAHMAGIETLQQAFAEGQDIHALTASEMFGVPLEEMTPEIRRQAKAIN----------- 768 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A + Sbjct: 769 ---FGVIYGIS------------------------------GFGLARNLRIPRKDAQGFI 795 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + ++ + + + + ++ + + GR Sbjct: 796 DRYFERFPGIRKYMDSTVEFAKE--------------------------HGYVQTLFGRK 829 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYD 623 + ++ R +Q + D++ M+ Sbjct: 830 IHTAEINAK----GPKAGFAKRAAINAP------IQGTAADVIRRAMIRMPEAIAHLPAR 879 Query: 624 IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673 ++L VHDE++ E P+ E + +M + A + L + K + Sbjct: 880 MLLQVHDELLFEVPEAAVEDTIAAAREVMENAADPAVHLDVKLVVDAGRGKNW 932 >gi|809180|pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex Length = 605 Score = 425 bits (1093), Expect = e-116, Method: Composition-based stats. Identities = 101/701 (14%), Positives = 204/701 (29%), Gaps = 167/701 (23%) Query: 8 FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVL 57 ET S +++ ++ +F + HD ++L Sbjct: 33 TETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 82 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGE 114 K LE+ V N ++R +L +++ T++ + + ++ E Sbjct: 83 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDSLAE 140 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L + E ++ A G Y D VT ++ + Sbjct: 141 R------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 188 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K L + I G +D + H ++ + + +L+++ Sbjct: 189 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 248 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 249 EIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 307 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 308 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 365 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 366 ------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 401 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT +QR K + G++ Sbjct: 402 TAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYGMS- 446 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + ++ + +++ V E Sbjct: 447 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 477 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ Sbjct: 478 YMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSSNGA 511 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + +Q + DI+ M+ +++ VHDE+V Sbjct: 512 RRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 562 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E D + ++ LM + +PL E + + Sbjct: 563 FEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601 >gi|254474520|ref|ZP_05087906.1| DNA polymerase I superfamily protein [Ruegeria sp. R11] gi|214028763|gb|EEB69598.1| DNA polymerase I superfamily protein [Ruegeria sp. R11] Length = 949 Score = 425 bits (1093), Expect = e-116, Method: Composition-based stats. Identities = 99/720 (13%), Positives = 205/720 (28%), Gaps = 180/720 (25%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM---------- 53 + +D ET ++ ++ + + H Sbjct: 356 VAVDTETTGLDEMK----------ADLVGISLAVEPGAACYIPLAHKAEAGSDDLFGSDT 405 Query: 54 -----------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLV 98 +LK LE+ + + N ++ + + I + + T++ Sbjct: 406 LAEGQMDFATALSMLKPVLEDPAILKIGQNMKYDAKIFRRQHGAGFEDGITVAPYDDTML 465 Query: 99 LARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 L+ + + + E S K L+ R Sbjct: 466 LSYALFAGQHGHGMDTLSERY--LSHSPIPIKSLL----------GTGKSAITFDRVPIA 513 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAH 205 Y D +T ++K +P +++ L + + G VD Sbjct: 514 DAVAYAAEDADITLRLWKLFKPQLHQQRVTTVYETLERPLSPVLAKMEMEGVKVDRDTLS 573 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQR 261 ++ + L+ E+ L + ++L LF + GL +T T Sbjct: 574 RMSNAFAQKMAALESEIHELAG-ETFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATGAD 632 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWS 320 +L +V + R S+ + L + ++ + GR+ + GA+ TGR + Sbjct: 633 ILEDLATEHDLPARVLDWRQ-LSKLKSTYTDALQDHIHPETGRVHTSYVQTGAN-TGRLA 690 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380 QN+P S +R +A EG L+ D Sbjct: 691 STDPNLQNIPIRSEEGRR-------------------------IREAFVAEEGNVLLALD 725 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA +AG +AF G+D++ T + FNV +++T D R K + Sbjct: 726 YSQIELRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLSEMTPDIRRQAKAIN---- 781 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 G++ A Sbjct: 782 ----------FGVIYGIS------------------------------GFGLARNLRIPR 801 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + ++ + ++ ++ + + Sbjct: 802 AEAQGFIDRYFERFPGIRRYMDDTVAFAKE--------------------------HGYV 835 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---- 616 GR + ++ + R +Q + D++ M+ Sbjct: 836 QTLFGRKIHTPEI----AAKGPRAGFAKRAAINAP------IQGTAADVIRRAMIRMPEA 885 Query: 617 ATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673 ++L VHDE++ E P++ E +M S A + L A+ + K + Sbjct: 886 IAHLPARMLLQVHDELLFEVPESAAEDTIEAARKVMESAADPAVHLDVKLVADAGQGKNW 945 >gi|229587657|ref|YP_002869776.1| DNA polymerase I [Pseudomonas fluorescens SBW25] gi|229359523|emb|CAY46364.1| DNA polymerase I [Pseudomonas fluorescens SBW25] Length = 929 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 105/712 (14%), Positives = 198/712 (27%), Gaps = 168/712 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 D ET A+ ++ +F H H Sbjct: 342 KLFAFDTETT----------GIDAQQAQLVGVSFAVQPHEAAYIPLTHAYIGAPEQLDRD 391 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKAC-------FNLDIPIHRWICTLVLARSNG 104 + LK LE+ V ++ F+ +L C + + T++ + Sbjct: 392 TVLLALKPLLEDPTKLKVGQHAKFDMNILANCAIGGDPAHGITVRGIA-FDTMLESYVLN 450 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 A + + + K L + + + A G Y D Sbjct: 451 --------ATATRHDMDSLAK-KYLDYDTVAFQDIAGKGAKQLTFDQIALEQAGPYAAED 501 Query: 165 VTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 VT + + L E L + I +G VD L + + Sbjct: 502 ADVTLRLHQALFAQLSAIPSLASVLTDIEIPLVPVLARIERQGALVDKDLLGIQSIELGN 561 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKL 269 + +L+++ + + ++L L+ + GL + T +T + VL+ + Sbjct: 562 KMVELERQAFEIAG-EEFNLGSPKQLGAILYEKLGLPVLKKTGKGQASTAEEVLAKLAED 620 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQN 328 +V S+ + L E +N GR+ + A+ TGR S QN Sbjct: 621 DYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAA-TGRLSSSDPNLQN 679 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +P + +R IA +G K++ AD + IE R+ Sbjct: 680 IPVRTAEGRR-------------------------IRQAFIAPKGYKMLAADYSQIELRI 714 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++ ++ + AF D++ T A F V VT DQR K + Sbjct: 715 MAHLSKDEGLMNAFRHNLDVHTATAAEVFKVELGDVTSDQRRSAKAINF----------- 763 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 G+ + + + Sbjct: 764 ---GLIYGMG------------------------------AQKLGKDIGVDTKTAKAYID 790 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + ++ V E + + GR L Sbjct: 791 VYFARYPGVREYMERTRAQA--------------------------SDQGYVETFFGRRL 824 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGY 622 D+ +N+ R +Q + DI+ + M+ Sbjct: 825 YLPDIHSNKP---QERAAAERTAINAP------MQGTAADIIKKAMVLVDNWLTDSGLDA 875 Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + + M++ +PL E + Sbjct: 876 KVILQVHDELVLEVREDLVAEVSEKIREYMSAAAQ--LDVPLLVEVGVGDNW 925 >gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968] gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150] gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968] gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150] Length = 894 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 102/701 (14%), Positives = 202/701 (28%), Gaps = 164/701 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK------ 58 ID ET S + ++ + ++ HD PQ+L+ Sbjct: 322 CIDTETTSLDVMM----------AEIVGISLAIEEGKAAYIPLTHDDGSPQLLREEVLTA 371 Query: 59 --EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG 113 LEN + + N ++ +VL+ + + + T++ + + ++ Sbjct: 372 LNPILENPTIKKIGQNLKYDYSVLRNH-GITLKGI-YYDTMLESYVLNSGSGRHDMDSLA 429 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 G + I+ E + + G Y D +T ++ Sbjct: 430 LKY--------LGHKTISY----EEIAGKGAKQLRFDQIPVEKAGAYAAEDADITLQLHH 477 Query: 174 RLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 +L PL + E L + + G +D A + + L++E Sbjct: 478 KLYPLIPESVHHVFGNIEMPLVTVLADMERMGVLIDSATLKQHGERLKERIRTLEEEALH 537 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 L + ++L+ LF L +T + VL A + R Sbjct: 538 LAG-KPFNLNSPKQLQEILFDSHKLPIIAKTPTGQPSTAEAVLQELAYDYRLAAVILEYR 596 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ ++ L + +N T + TGR S QN+P S Sbjct: 597 -SLTKLVSTYIDALPKKINPKTNRVHTSYNQAVTATGRLSSSEPNLQNIPIRSEEGR--- 652 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R+ IA E ++ AD + IE R++A ++ ++ LK Sbjct: 653 ----------------------LIRTAFIAPEDNIILAADYSQIELRIMAHLSQDENLLK 690 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ T + F + ++ +QR K + G++ Sbjct: 691 AFANGWDVHAATASEIFQIPLEEINNEQRRRAKAIN--------------FGLIYGMSSF 736 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A + + + Q++ +V E Sbjct: 737 GLAKQI------------------------------GVERQDAQYYIDTYFQRYPKVLEY 766 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 N Q + + GR L ++ Sbjct: 767 MNRTRQQAH--------------------------HQGYVETLFGRRLYLPEINARNLMR 800 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-------YDIVLTVHDEIV 633 + R +Q + DI+ M+ K +++ VHDE+V Sbjct: 801 ---QKAAERTAINAP------MQGTAADIIKNAMICIAKWQNSHEKPPARMIMQVHDELV 851 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E ++ + LM + +PL + Sbjct: 852 FEVNKNAIESSKEMIRELMEHTVT--LSVPLVVSIGTGANW 890 >gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355] Length = 928 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 107/706 (15%), Positives = 211/706 (29%), Gaps = 170/706 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET LT ++ +F HD + Sbjct: 352 AFDLETDGLDTLT----------ANIVGLSFAVAPGEAAYLPVAHDYLDAPEQLDRDAVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ D + V N ++R VLK ++++ ++ T++ + + + Sbjct: 402 AQLKPLLEDPDASKVGQNLKYDRGVLKNY-DIELAGIKY-DTMLESYILNSVVGKHDMDS 459 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L + E ++ A Y D VT ++ Sbjct: 460 LSAR------------WLNHKTITFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQL 507 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P E L + + G +D A+ ++ + +L+ Sbjct: 508 HLKMWPELEKEAGPKKVFEQIEMPLLKVISRVERNGVLIDQAILAQHSKELTSRLAELEL 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF + G+ T +T + VL+ P + Sbjct: 568 KAHELAG-EPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVI 626 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 +R S+ + L +N GR+ + + TGR S QN+P + Sbjct: 627 LEHR-GLSKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSTDPNLQNIPVRNDE 684 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A +G ++V AD + IE R++A ++ + Sbjct: 685 GRR-------------------------IRQAFVAGKGNRIVAADYSQIELRIMAHLSQD 719 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF GED++ T + F V ++VT +QR K + Sbjct: 720 KGLLDAFSQGEDIHRATASEVFGVPLSKVTGEQRRSAKAINF--------------GLIY 765 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + + ++ + +++ Sbjct: 766 GMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFERYP 795 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V Q +N + GR L D+ + Sbjct: 796 GVLRYMENTRQLA--------------------------ASNGYVETLDGRRLWLPDIKS 829 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTV 628 + + + R +Q + DI+ M+ +++ V Sbjct: 830 SNAIRR---KAAERAAINAP------MQGTAADIIKRAMIAVDDWLQKQTDDAVRMIMQV 880 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E A + LM + A +PL E + Sbjct: 881 HDELVFEIKAEAVDEASKQIRALMEGSM--ALDVPLLVEVGVGDNW 924 >gi|157147357|ref|YP_001454676.1| DNA polymerase I [Citrobacter koseri ATCC BAA-895] gi|157084562|gb|ABV14240.1| hypothetical protein CKO_03151 [Citrobacter koseri ATCC BAA-895] Length = 928 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 101/701 (14%), Positives = 206/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + HD Sbjct: 353 AFDTETDSLDN----------HAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ V N ++R VL+ +++ T++ + + Sbjct: 403 ELLKPLLEDEKARKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILNSVAG------ 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + E + L + E ++ A G Y D VT ++ + Sbjct: 455 --RHDMDSLSE-RWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H ++ + + +L+++ Sbjct: 512 MWPELQQYKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA + + AD + IE R++A ++ ++ L Sbjct: 689 ------------------------IRQAFIAPQDYVIASADYSQIELRIMAHLSRDKGLL 724 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT +QR K + G++ Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLESVTAEQRRSAKAINF--------------GLIYGMS- 769 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + ++ + +++ V E Sbjct: 770 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 800 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ + Sbjct: 801 YMERTRAQAKE--------------------------RGYVETLEGRRLYLPDIKSSNAA 834 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + +Q + DI+ M+ K +++ VHDE+V Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDKWLQDEQPRVRMIMQVHDELV 885 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E D ++ LM + +PL E + + Sbjct: 886 FEVHKDDLDVVSKKIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|254226589|ref|ZP_04920170.1| DNA polymerase I [Vibrio cholerae V51] gi|125620861|gb|EAZ49214.1| DNA polymerase I [Vibrio cholerae V51] Length = 930 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 205/703 (29%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + HD + Sbjct: 354 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVI 403 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 404 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 461 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ A +Y D VT + + Sbjct: 462 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 511 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G +D L +Q + + +L+Q+ Sbjct: 512 RIHPLIEQDAKLEQVYREIEIPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKA 571 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 572 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 630 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N + T + TGR S QN+P + Sbjct: 631 YR-GLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 689 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 690 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 724 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 725 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 770 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 771 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 800 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + Q + GR L ++ + + Sbjct: 801 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 834 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 835 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 885 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S A +PL AE + Sbjct: 886 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 926 >gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103] gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103] Length = 928 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 107/706 (15%), Positives = 211/706 (29%), Gaps = 170/706 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET LT ++ +F HD + Sbjct: 352 AFDLETDGLDTLT----------ANIVGLSFAVAPGEAAYLPVAHDYLDAPEQLDRDAVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ D + V N ++R VLK ++++ ++ T++ + + + Sbjct: 402 AQLKPLLEDPDASKVGQNLKYDRGVLKNY-DIELAGIKY-DTMLESYILNSVVGKHDMDS 459 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L + E ++ A Y D VT ++ Sbjct: 460 LSAR------------WLNHKTITFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQL 507 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P E L + + G +D A+ ++ + +L+ Sbjct: 508 HLKMWPELEKEAGPKKVFEQIEMPLLKVISRVERNGVLIDQAILAQHSKELTSRLAELEL 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF + G+ T +T + VL+ P + Sbjct: 568 KAHELAG-EPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVI 626 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 +R S+ + L +N GR+ + + TGR S QN+P + Sbjct: 627 LEHR-GLSKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSTDPNLQNIPVRNDE 684 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A +G ++V AD + IE R++A ++ + Sbjct: 685 GRR-------------------------IRQAFVAGKGNRIVAADYSQIELRIMAHLSQD 719 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF GED++ T + F V ++VT +QR K + Sbjct: 720 KGLLDAFSQGEDIHRATASEVFGVPLSKVTGEQRRSAKAINF--------------GLIY 765 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + + ++ + +++ Sbjct: 766 GMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFERYP 795 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V Q +N + GR L D+ + Sbjct: 796 GVLRYMENTRQLA--------------------------ASNGYVETLDGRRLWLPDIKS 829 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTV 628 + + + R +Q + DI+ M+ +++ V Sbjct: 830 SNAIRR---KAAERAAINAP------MQGTAADIIKRAMIALDDWLQKQTDDAVRMIMQV 880 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E A + LM + A +PL E + Sbjct: 881 HDELVFEIKAEAVDEASKQIRALMEGSM--ALDVPLLVEVGVGDNW 924 >gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217] gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217] Length = 921 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 103/707 (14%), Positives = 205/707 (28%), Gaps = 166/707 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51 + ID ET S + D ++ +F + HD Sbjct: 342 KLIAIDTETTSLNYM----------DAKLVGISFAIEAGEAAYLPLAHDYLDAPSQIDMA 391 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LK 110 + L+ LE+ + V N ++ ++ + + T++ + ++ Sbjct: 392 TALEKLRPLLESDNPAKVGQNLKYDISIFAN-VGIKLKGVH-FDTMLESYVFNSVASRHD 449 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 G ALK K ++ + ++ Y D +T Sbjct: 450 MDGLALKYLGHKNISFED----------VAGKGAKQLTFNQIDLDTAAPYAAEDADITLR 499 Query: 171 IFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L P KE L + I +G +D L + + + KL+ Sbjct: 500 LHQHLWPRLEKEPELAQVFTELELPLIQVLSDIERQGVLIDPMLLSQQSDELAQKIDKLE 559 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 E + + ++L+ F + + T +T + VL P Sbjct: 560 LEAYEIAG-EKFNLGSPKQLQVLFFEKLAYPIIKKTPKGAPSTAEEVLVELALDYPLPKI 618 Query: 276 VFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R ++ + L +N + GR+ + A+ TGR S QN+P + Sbjct: 619 ILAHR-SLAKLKSTYTDKLPLMVNGTTGRVHTSYHQANAA-TGRLSSSDPNLQNIPIRTE 676 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA G+K++ AD + IE R++A ++ Sbjct: 677 EGRR-------------------------IRQAFIAPAGRKILAADYSQIELRIMAHLSQ 711 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F +VT +QR K + Sbjct: 712 DKGLLTAFAEGKDIHRATAAEVFGAHFEEVTTEQRRRAKAVNF--------------GLI 757 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ A + + + ++ Sbjct: 758 YGMSAFGLAKQLDI------------------------------PRNEAQTYIDTYFARY 787 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + E + + + GR L ++ Sbjct: 788 PGVLQYMEETRASAAE--------------------------LGYVSTLFGRRLYLPEIR 821 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLT 627 + + R +Q + DI+ + M+N +++ Sbjct: 822 DRNAMRRQA---AERAAINAP------MQGTAADIIKKAMINIANWIKTETQGEITMIMQ 872 Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E + + LM + L AE + Sbjct: 873 VHDELVFEVDEAQAETLKAKICLLMAQAAD--LDVTLLAEAGIGNNW 917 >gi|114764066|ref|ZP_01443305.1| DNA polymerase I [Pelagibaca bermudensis HTCC2601] gi|114543424|gb|EAU46439.1| DNA polymerase I [Roseovarius sp. HTCC2601] Length = 935 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 105/714 (14%), Positives = 200/714 (28%), Gaps = 176/714 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 + +D ET ++ ++ + + H Sbjct: 350 VAVDTETTGLNEMAC----------DLVGISLCTEPGEACYIPLAHRADSDGGLFGDGDL 399 Query: 51 -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 +LK LE+ V + N ++ + + I T++++ + Sbjct: 400 AEGQMPMQAALDLLKPLLEDPAVMKIGQNMKYDAKIFARY---GVRIAPIDDTMLMSYAM 456 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + A+ E S KEL+ + K + +Y Sbjct: 457 NAGLHGHGMDALSERY--LSHTPIPIKELL----------GSGKKMKTFDQVPIEDAVKY 504 Query: 161 CKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T ++ L+P E+ L + + G VD ++ Sbjct: 505 AAEDADITLRLWTLLKPQLHRNHVTRVYETMERPLVPVLAEMEMAGVQVDRDTLSRMSNA 564 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266 + L+ E+ L + ++L LF + GL +T T VL Sbjct: 565 FSQKMAALEAEIHELAG-ESFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATGADVLEDL 623 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 +V + R S+ + L E +N D T + + TGR S Sbjct: 624 ATEHELPARVLDWRQ-LSKLKSTYTDALQEHINKDTGRVHTSYVISGANTGRLSSTDPNL 682 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P S +R +A EGK +V D + IE Sbjct: 683 QNIPVRSEEGRR-------------------------IREAFVAPEGKTIVALDYSQIEL 717 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA MA +AF G+D++ T + FNV ++T + R K + Sbjct: 718 RILAHMAEIDALKQAFRDGQDIHAMTASEMFNVPMDEMTSEIRRQAKAIN---------- 767 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ A + + Sbjct: 768 ----FGVIYGIS------------------------------GFGLARNLRIPRSEAQGF 793 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + ++ + ++ ++ + GR Sbjct: 794 IDRYFERFPGIRTYMDDTVAFAKEHK--------------------------RVETLFGR 827 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY 622 + ++ + R +Q + DI+ M+ K Sbjct: 828 VIHTPEI----AAKGPRAGFAKRAAINAP------IQGTAADIIRRAMIRMPDAIEKLPA 877 Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E E S +M P +PL + + K + Sbjct: 878 TMLLQVHDELIFEVEQGAEEALISAARTVMEGAAEPVVKLDVPLVVDAGQGKSW 931 >gi|118595288|ref|ZP_01552635.1| DNA polymerase I [Methylophilales bacterium HTCC2181] gi|118441066|gb|EAV47693.1| DNA polymerase I [Methylophilales bacterium HTCC2181] Length = 904 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 100/707 (14%), Positives = 208/707 (29%), Gaps = 168/707 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--------- 52 ID ET S + ++ + + H Sbjct: 327 KFFSIDTETNSLNTMK----------AELVGISLCINPGRACYIPLCHKNSSVDQLSLAA 376 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALK 110 + + LK LE++ + + N ++ + ++I T++++ + Sbjct: 377 VLEDLKPILEDSSIKKLGQNLKYDAHIFLNY-GIEINGIS-DDTMLMSYVIESNQNHGMD 434 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + G + E+ + + Y D VT + Sbjct: 435 KLSAKY--------LGHNCKSY----ESLVGKGVNQLTFDQVSVEDAVPYAAEDADVTLQ 482 Query: 171 IFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 ++ ++ I G +D + ++++ + L+ Sbjct: 483 LYLAMKETLDSNPSLLRVYKDIEIPAMKALIHIERNGVLIDPKILGDQSKVIGEKLLLLE 542 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQ 275 ++ L + ++L+ LF + + T +T + VLS P Sbjct: 543 EKAFDLAGQP-FNLSSPKQLQEILFEKLEIKPLKKTPSGTPSTSEEVLSELALNYPLPKL 601 Query: 276 VFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + R ++ + L + +N S GR+ + A TGR + QN+P + Sbjct: 602 ILEYR-SLAKLKSTYTDKLPKMINESSGRVHTSYNQAIA-ITGRLASSDPNLQNIPIRTV 659 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 + VR IA +G K++ AD + IE R++A ++ Sbjct: 660 EGRK-------------------------VREAFIAPDGSKILSADYSQIELRIMAHLSK 694 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ + AF+ ED++ T FN+ + V+ +QR KV+ Sbjct: 695 DKRLVAAFKNNEDIHTITAGEIFNIDNSAVSSEQRRYAKVIN--------------FGLI 740 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + A A + + + K+ Sbjct: 741 YGMGV------------------------------YGLAKNLNIERAAAQNYIERYFSKY 770 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V E + Q + N + GR L ++ Sbjct: 771 PSVREYMEDTKQDARK--------------------------NGYVETHFGRRLWVPEIN 804 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLT 627 + R G +Q + D++ M+ +++ Sbjct: 805 GSNGMQR---AGAERAAINGP------MQGTAADLIKMAMVGVKTWLDGQRHLKGKMIMQ 855 Query: 628 VHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E PDT+ + +M + +PL + E K + Sbjct: 856 VHDELVFEVPDTEVTEFKENIKRIMENVAQ--MDVPLIVDLGEGKNW 900 >gi|297581848|ref|ZP_06943769.1| DNA polymerase I [Vibrio cholerae RC385] gi|297533942|gb|EFH72782.1| DNA polymerase I [Vibrio cholerae RC385] Length = 934 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 205/703 (29%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + HD + Sbjct: 358 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVI 407 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 408 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 465 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ A +Y D VT + + Sbjct: 466 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 515 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G +D L +Q + + +L+Q+ Sbjct: 516 RIHPLIEQDAKLEQVYREIEIPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKA 575 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 576 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 634 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N + T + TGR S QN+P + Sbjct: 635 YR-GLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 693 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 694 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 728 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 729 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 774 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 775 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 804 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + Q + GR L ++ + + Sbjct: 805 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 838 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 839 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 889 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S A +PL AE + Sbjct: 890 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930 >gi|194367713|ref|YP_002030323.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3] gi|194350517|gb|ACF53640.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3] Length = 924 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 101/708 (14%), Positives = 197/708 (27%), Gaps = 169/708 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 + D ET + + ++ + + HD Sbjct: 346 DLISFDTETDALDAMR----------ARLVGISLAVEPGKAAYIPVGHDYPGAPPQLPMQ 395 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SA 108 + L+ L++ + + ++ VL+ +++ + T++ + Sbjct: 396 QVLDALRPVLQDPAKKKLGQHGKYDLHVLRRH-GVEVQGYH-DDTMLESFVLNSTATRHD 453 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + ++ G I K E + P + Y D +T Sbjct: 454 MDSLALRY--------LGYNTI----KFEDVAGKGAKQIPFSQVGIDEASRYAAEDADIT 501 Query: 169 REIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + + L+P E L + +I G +D +Q + Sbjct: 502 LRLHRALQPQLLAEPALDSVYRDIEMPLVPVLTSIEANGVRIDTVELRRQSQDLSSRMLA 561 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQA 273 Q+ L + ++L+ LF E L +T + L + Sbjct: 562 AQQKATELAG-RSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP 620 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + R ++ + L E +N D GR+ + GA+ TGR S QN+P Sbjct: 621 RVILEYR-GLAKLRSTYTDKLPEMVNPDTGRVHTSYHQSGAA-TGRLSSSDPNLQNIPIR 678 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +R IA EG +L+ AD + IE R++A + Sbjct: 679 TEDGRR-------------------------IRRAFIAPEGFQLLAADYSQIELRIMAHL 713 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + + AFE G D++ T A F +VT ++R K + Sbjct: 714 SEDPGLVGAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINF--------------G 759 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ A + + Sbjct: 760 LMYGMS------------------------------AFGLARNLGIDRGQAQDYVALYFS 789 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ V + + Q + GR L D Sbjct: 790 RYPGVRDFMERMRQQARD--------------------------QGYVETLFGRRLYLND 823 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVL 626 + L R +Q + DI+ M++ + A ++L Sbjct: 824 IHARNQGLR---AGAERAAINAP------MQGTAADIIKRAMVDVDQWLRDSGAPARMIL 874 Query: 627 TVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V ET + + M+ +PL + + Sbjct: 875 QVHDELVFETESSFVEELRLQVVERMSQAAK--LRVPLVVDTGIGNNW 920 >gi|153820094|ref|ZP_01972761.1| DNA polymerase I [Vibrio cholerae NCTC 8457] gi|126509364|gb|EAZ71958.1| DNA polymerase I [Vibrio cholerae NCTC 8457] Length = 851 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 203/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + HD + Sbjct: 275 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 324 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 325 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 382 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ A +Y D VT + + Sbjct: 383 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 432 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G +D L +Q + + +L+Q Sbjct: 433 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 492 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 493 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 551 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 552 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 610 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 611 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 645 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 646 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 691 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 692 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 721 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + Q + GR L ++ + + Sbjct: 722 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 755 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 756 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 806 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S A +PL AE + Sbjct: 807 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 847 >gi|229525005|ref|ZP_04414410.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426] gi|229338586|gb|EEO03603.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426] Length = 906 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 204/703 (29%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + HD + Sbjct: 330 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 379 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 380 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 437 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ A +Y D VT + + Sbjct: 438 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 487 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G +D L +Q + + +L+Q+ Sbjct: 488 RIHPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKA 547 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 548 YELAG-KPFNVSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 606 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 607 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 665 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 666 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 700 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 701 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 746 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 747 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 776 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + Q + GR L ++ + + Sbjct: 777 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 810 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 811 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 861 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S A +PL AE + Sbjct: 862 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 902 >gi|149204271|ref|ZP_01881238.1| DNA polymerase I [Roseovarius sp. TM1035] gi|149142156|gb|EDM30203.1| DNA polymerase I [Roseovarius sp. TM1035] Length = 934 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 98/715 (13%), Positives = 199/715 (27%), Gaps = 176/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51 + D ET S ++ ++ + H Sbjct: 348 YVAFDTETTSLNEM----------QADLVGISLATAPGRACYIPVAHKDGAADDLFGSDA 397 Query: 52 ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 + LK LE+ + + N ++ +L A I + T++++ + Sbjct: 398 RAEGQLPLDEVLNALKPVLEDDAILKIGQNMKYDAKILAAH---GITVAPIDDTMLMSYA 454 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + + E L + R + Sbjct: 455 LHAGLHGHGMDTLSERY------------LNHSPIPIRSLLGSGKAAVTFDRVPVAEAVK 502 Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T ++ L+P + E+ L + + G VD ++ Sbjct: 503 YAAEDADITLRLWLTLKPQLHRAQVTTVYETLERPLVPVLARMERDGVLVDRDTLRAMSG 562 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265 + L+ E+ +L + ++L LF E GL + +T T VL Sbjct: 563 KFAQKMAGLESEIHAL-ARRSFNVGSPKQLGEILFDEMGLPGGEKGKTGAYATGADVLED 621 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 +V + R S+ + L + ++ D T + TGR+S Sbjct: 622 LATEHDLPARVLDWRQ-LSKLKSTYTDALQDHIDPDTGRVHTSYLQTGASTGRFSSSDPN 680 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S +R +A+ G +LV D + IE Sbjct: 681 LQNIPVRSEEGRR-------------------------IREAFVAAPGNRLVSLDYSQIE 715 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +AG + +AF G D++ T + FNV A++T + R K + Sbjct: 716 LRILAHVAGIETLKQAFRDGHDIHAMTASEMFNVPLAEMTPEIRRQAKAIN--------- 766 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ A + Sbjct: 767 -----FGVIYGIS------------------------------GFGLARNLRIPRGEAQG 791 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + ++ + + + ++ + + G Sbjct: 792 FIDRYFERFPGIKDYMDATTAFAKE--------------------------HGYVQTLFG 825 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621 R + ++ + R +Q + DI+ M+ Sbjct: 826 RKIHTPEI----AAKGPRAGFARRAAINAP------IQGTAADIIRRAMIRMPEAIEGLP 875 Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEGYESKRY 673 ++L VHDE++ E + + +M A +PL + + + + Sbjct: 876 CKMLLQVHDELIFEVAEDSVDRLIDVARAVMQGAADPAVRLDVPLVVDAGQGRNW 930 >gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016] gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016] Length = 957 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 102/703 (14%), Positives = 201/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + HD + Sbjct: 381 AFDTETDSLDYMV----------ANLVGLSFAVAEGEAAYVPVAHDYLDAPEQLDRDWVL 430 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +VL +++ + T++ + Sbjct: 431 AQLKPLLEDDTKAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDS 488 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ ++L ++ Y D VT + Sbjct: 489 LALRFLQHSCISFEQL----------AGKGKNQLTFNQIDLNEAAVYAAEDADVTLRLHN 538 Query: 174 RLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL +++ L + + G +D +Q + V +L+Q+ Sbjct: 539 RLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLIDDMKLSAQSQEIAVRLGELEQKA 598 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+T LF + GL T +T + VL P + Sbjct: 599 YEIAGQP-FNMNSPKQLQTILFEQMGLPVIKKTPSGTPSTAEEVLQELALDYPLPSVIME 657 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 658 YR-GLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 716 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 717 -------------------------IRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQAL 751 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF+ G+D++ T A V+ QV+ +QR K + G++ Sbjct: 752 LDAFQQGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVN--------------FGLIYGMS 797 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 798 ------------------------------AFGLAKQLGIPRGEAQTYMDKYFERYPGVM 827 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + + GR L ++ + Sbjct: 828 QYMEDTRSNA--------------------------SQHGYVETIFGRRLHLPEITSRNV 861 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631 + R +Q + DI+ + M+ +++ VHDE Sbjct: 862 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 912 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S +PL AE + Sbjct: 913 LVFEVEESCLTEIESKVQQLMESAAQ--LNVPLVAEAGHGDNW 953 >gi|332288906|ref|YP_004419758.1| DNA polymerase I [Gallibacterium anatis UMN179] gi|330431802|gb|AEC16861.1| DNA polymerase I [Gallibacterium anatis UMN179] Length = 925 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 105/702 (14%), Positives = 211/702 (30%), Gaps = 165/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 ID ET S + ++ +F ++ H + Sbjct: 352 AIDTETNSLNYM----------QAKLVGLSFALENGEAAYLPLQHHYLDCPQQLSWKTVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112 LK LE+ ++ V N ++ T+L +++ T++ + + + + Sbjct: 402 AALKTVLEDPNIKKVGQNLKYDLTILARH-GVELQ-GVVYDTMLESYTLDSTGRHNMDDL 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + I E + EY D VT ++ Sbjct: 460 AKRFLH--------HDTIHF----EDLAGKGKGQLTFDQIEIDKAAEYAAEDADVTFKLH 507 Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P E L + + G +D L + +Q ++ +L+Q+ Sbjct: 508 QVLWPQLNQTPSLVKLFTEVELPLSQVLARMERNGVLIDSDLLYQQSQEINARLIQLEQQ 567 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 L + ++L+ LF + GL + T +T + VL + Sbjct: 568 AHQLAGQA-FNLASTKQLQEILFGKLGLPVLKKTPKGAPSTNEEVLEELAYEHELPKLLV 626 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R S+ + L + ++ + T + TGR S QN+P S Sbjct: 627 EHR-GFSKLKSTYTDKLPQMIDPNTGRVHTSYHQAVTITGRLSSSDPNLQNIPTRSEEGR 685 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + +R IA +G K+V AD + IE R++A ++ + Sbjct: 686 K-------------------------IRQAFIAPQGFKVVAADYSQIELRIMAHLSADAG 720 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 AF G D++ +T A F+V QVT QR K + G+ Sbjct: 721 LAYAFSHGLDVHRSTAAEVFDVPLEQVTSQQRYRAKAIN--------------FGLIYGM 766 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A ++ + + ++ V Sbjct: 767 SAFGLARQLQI------------------------------PRNEAQTYIDRYFHRYPGV 796 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + N++ + +Q + GR L ++ ++ Sbjct: 797 KQFMNDIQEKAKQ--------------------------QGYVETLLGRRLYLPELKSSN 830 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-----KAGYDIVLTVHDEI 632 + R +Q + DI+ + M++ K +++ VHDE+ Sbjct: 831 GMRR---KAAERVAINAP------MQGTAADIIKKAMIDIDRFIADKNDIRMIMQVHDEL 881 Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E + + +M + +PL E + Sbjct: 882 VFEVKEDKVEYYEKIIKDMMENAVK--LSVPLIVEVNFGDNW 921 >gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O] gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O] Length = 931 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 103/703 (14%), Positives = 202/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + HD + Sbjct: 355 AFDTETDSLDYMV----------ANLVGLSFAVAEGEAAYVPVAHDYLDAPEQLDREWVL 404 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +VL +++ + T++ + Sbjct: 405 AQLKPLLEDDTKAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDS 462 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ ++L ++ Y D VT + Sbjct: 463 LALRFLQHSCISFEQL----------AGKGKNQLTFNQIDLNEAAVYAAEDADVTLRLHN 512 Query: 174 RLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL +++ L + + G +D +Q + V +L+Q+ Sbjct: 513 RLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLIDDMKLSAQSQEIAVRLGELEQKA 572 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+T LF + GL T +T + VL P + Sbjct: 573 YEIAGQP-FNMNSPKQLQTILFEQMGLPVIKKTPSGTPSTAEEVLQELALDYPLPSVIME 631 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 632 YR-GLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 690 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 691 -------------------------IRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQAL 725 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF+ G+D++ T A V+ QV+ +QR K + G++ Sbjct: 726 LDAFQQGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVN--------------FGLIYGMS 771 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 772 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 801 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + Q + + GR L ++ + Sbjct: 802 QYMEDTRSNAAQ--------------------------HGYVETIFGRRLHLPEITSRNV 835 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631 + R +Q + DI+ + M+ +++ VHDE Sbjct: 836 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 886 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S +PL AE + Sbjct: 887 LVFEVEESCLTEIESKVQQLMESAAQ--LNVPLVAEAGHGDNW 927 >gi|222084398|ref|YP_002542927.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84] gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84] Length = 1000 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 104/727 (14%), Positives = 214/727 (29%), Gaps = 186/727 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---------VELWDCVHDP-- 51 + D ET S ++ F+ D+ H Sbjct: 400 IVAFDTETTSLD----------VMQAEIVGFSLAIADNKNDPSGASIRAAYVPLNHKNGV 449 Query: 52 ----------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 LK LE+T V +A N ++ ++K I + Sbjct: 450 GDLLGGGLADNQIPLRDALPRLKALLEDTSVLKIAQNLKYDYLLMKRY---GIETKGFDD 506 Query: 96 TLVLARSNG----LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 T++L+ + ++ E G + IA + N Sbjct: 507 TMLLSYVLDGGANATHGMDSLSERW--------LGHKPIAY----KDVAGSGKSNITFDL 554 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDV 201 Y D VT ++ L+P E+ L + + +RG +D Sbjct: 555 VDIDRATAYAAEDADVTLRLWLVLKPRLAAEKLATVYERLERPLVPVLAHMEERGITIDR 614 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----T 257 + L+ + +L+ E+ +L + ++L LF + GL T+ + Sbjct: 615 QILSRLSGELAQGAARLEDEIYTLAG-ERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWS 673 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T +VL + + + + ++ + L ++ + + T L ++ TG Sbjct: 674 TSAQVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTG 733 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P + + +R+ I++ G KL+ Sbjct: 734 RLSSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHKLI 768 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA +A +AF G D++ T + F V + + R K + Sbjct: 769 SADYSQIELRVLAHVANIPQLEQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAINF 828 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + G++ A+ + Sbjct: 829 GII--------------YGISAFGLANQLSIE---------------------------- 846 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + K + ++ + + Sbjct: 847 --RSEAGDYIKRYFERFPGIRDYMESTKATARD--------------------------K 878 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 + GR + + ++ ++ + R +Q + D++ M+ Sbjct: 879 GYVETIFGRRVHFPEIRSSNP---SVRAFNERASINAP------IQGSAADVIRRAMIKM 929 Query: 618 TKAGY--------DIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAE 666 A ++L VHDE++ E D D + ++ +M + P+ +PLK + Sbjct: 930 EPALADAGLGDRVRMLLQVHDELIFEVEDADVERSTPVIVSVMENAAMPAVNMSVPLKVD 989 Query: 667 GYESKRY 673 + + Sbjct: 990 ARAANNW 996 >gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK] gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK] Length = 922 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 98/708 (13%), Positives = 201/708 (28%), Gaps = 168/708 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 + D ET +T ++ +F ++ HD Sbjct: 343 DVVAFDTETDGLDYMT----------ANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRD 392 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + LK LE+ V N F+ ++L ++++ ++ T++ + Sbjct: 393 WVLAQLKPLLEDPAQNKVGQNLKFDMSILARY-DINMQGIKY-DTMLESYVFNSVVGRHD 450 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + ++ L + E + ++ + G Y D +T Sbjct: 451 MDSLALRY------------LEHKNISFEEVAGKGKKQLTFNQIDLDVAGPYAAEDADIT 498 Query: 169 REIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + L E L + I G +D L + + + Sbjct: 499 LRLHNLLNEKVESDEQLKSVFEDIEMPLVPVLSRIERTGVLIDSMLLSAQSTEIAARLDE 558 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQA 273 L+ + + + ++L+ LF + GL + T + T + VL P Sbjct: 559 LETKAYEI-AEQEFNLSSPKQLQAILFEKMGLPILKKTPSGAPSTNEEVLQELALDYPLP 617 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + R ++ + L + +N T + TGR S QN+P + Sbjct: 618 KILLEYR-GLAKLKSTYTDKLPKMVNPSTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRN 676 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R IA G K++ D + IE R++A ++ Sbjct: 677 AEGRR-------------------------IRQAFIAPTGYKILAVDYSQIELRIMAHLS 711 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ L+AF+ G+D++ T A + VT +QR K + Sbjct: 712 GDKALLEAFKQGKDIHAATAAEILGLPIESVTTEQRRRAKAINF--------------GL 757 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ A + + + ++ Sbjct: 758 IYGMS------------------------------AFGLAKQLGMGRNEAQDYMNVYFER 787 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V E + GR L D+ Sbjct: 788 YPGVLEYMESTRVHA--------------------------SEQGYVETLFGRRLYLPDI 821 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVL 626 + + R +Q + DI+ M+ + +++ Sbjct: 822 KSRNGIRR---KAAERAAINAP------MQGTAADIIKRAMVLVDEWVEQQETGRVRLLM 872 Query: 627 TVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E +++ + + LM +PL A+ + Sbjct: 873 QVHDELVFEVQESELDAVSADVRRLMELAAE--LDVPLIADAGAGNNW 918 >gi|88858644|ref|ZP_01133285.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas tunicata D2] gi|88818870|gb|EAR28684.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas tunicata D2] Length = 916 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 104/704 (14%), Positives = 201/704 (28%), Gaps = 164/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + HD ++ Sbjct: 340 AFDTETTSLDYM----------QADLVGMSFAVEAGKAAYLPIGHDYLGAPEQLSKEMVF 389 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113 L L + V N ++++VL L++ + T++ + Sbjct: 390 AKLGPLLADEQRPKVGQNLKYDKSVLARA-GLELNGIK-FDTMLESYVLNSVGTRHDMDS 447 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 ALK K +E ++ Y D +T + + Sbjct: 448 LALKYLGHKNISFEE----------IAGKGKNQLTFNQIELDKAAPYAAEDADITLRLHQ 497 Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E L + I G +D + + + +L++E Sbjct: 498 MLWPKLEADEKLKVVFETIELPLVSVLSDIERTGVEIDSDMLAKQSFEIGKRLDELEKEA 557 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+ LF + L + T +T + VL P + Sbjct: 558 HELAG-EAFNLSSPKQLQVILFEKHELPVIKKTPKGAPSTAEEVLQELAHDYPLPKLIIE 616 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R S+ + L +N+D + T + TGR S QN+P + + Sbjct: 617 HR-GLSKLKSTYTDKLPLMVNADTQRVHTSYHQAITATGRLSSTDPNLQNIPIRTEEGRK 675 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A++G K+ AD + IE R++A ++ ++ Sbjct: 676 -------------------------IRQAFVAAKGYKIAAADYSQIELRIMAHLSQDKGL 710 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G D++ T A F V+ A+VT D R K + G++ Sbjct: 711 LNAFAQGLDVHSATAAEVFGVSVAEVTTDMRRKAKAVNF--------------GLIYGMS 756 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + ++ V Sbjct: 757 ------------------------------AFGLARQLDVPRHEAQHYIDKYFERFPGVL 786 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E + + + GR L ++ Sbjct: 787 EYMESTREKAAE--------------------------LGYVETLFGRRLYLPEINARNG 820 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631 + + R +Q + DI+ + M+ +++ VHDE Sbjct: 821 A---SRKAAERAAINAP------MQGTAADIIKKAMITVNAWVKAQPANTVRLLMQVHDE 871 Query: 632 IVCETPDTDE-FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 +V E + + LM+ A +PL E ++ Sbjct: 872 LVFEIKEECVGDYMQHICLLMSQAA--ALDVPLIVESDSGDNWQ 913 >gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105] gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105] Length = 927 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 106/704 (15%), Positives = 203/704 (28%), Gaps = 166/704 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VM 53 + D ET S + + ++ +F H + Sbjct: 352 VAFDTETDSLEPM----------NARIVGLSFSVKPGVGYYIPLTHQDLTAEPQLPLAEV 401 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKA 111 LK E++D +A N+ ++ V+ ++ + + T++ + P + A Sbjct: 402 LAFLKPWFEDSDSPKIAQNAKYDLHVMANH-DVWVK-GLFEDTMLASYILEAHKPHGMDA 459 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L K E + +Y D VT + Sbjct: 460 LALR------------WLNYNTIKYEEVAGKGASQITFDQVPIDTATKYAAEDAEVTLRL 507 Query: 172 FKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L+ K E + + G +D + + + +++ Sbjct: 508 AHALKAELDKVPELAKLYRDVELPFGQVLFEVERNGVLIDSDKLEAQSAEIADKLKLIEE 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQV 276 + L G + +++ LF + GL + T +T + VLS + P ++ Sbjct: 568 QAFELAGGS-FNLNSPKQIGELLFDKLGLPVVKKTASGAPSTDEEVLSKLAEDYPLPAKL 626 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R ++ + L +N+ T + TGR + QN+P + Sbjct: 627 LEHR-SLAKLKSTYTDKLPRMVNARTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEG 685 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 VR IA+ G LV AD + IE R++A ++G++ Sbjct: 686 RR-------------------------VREAFIAAPGCVLVSADYSQIELRIMAHISGDE 720 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF G D++ T + F V +VT D R KV+ L Y A Sbjct: 721 ALIHAFNEGLDIHSATASEIFGVGLNEVTSDHRRTAKVINFGLIYGMSA-----FGLAGN 775 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L + A + + + F ++ E G R Sbjct: 776 LGITREAAKLYIDRYFARYPGVAKFMDNVRAQAKEDGFVQTVFGR---------RLWLPE 826 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + P+G G Sbjct: 827 IKS-------------------------------------------PNGPRRA----GAE 839 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHD 630 R+ +N +Q S D++ M+ K +++ VHD Sbjct: 840 RAAINAP------------------MQGTSADLIKMAMVELSAWLKAEKLNSKMIMQVHD 881 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E++ E P + + +MT +PL+ + Sbjct: 882 EVIFEVPKGELELIQKRVPEIMTQVAK--LRVPLEVGCGVGNNW 923 >gi|288928711|ref|ZP_06422557.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108] gi|288329695|gb|EFC68280.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108] Length = 927 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 101/700 (14%), Positives = 204/700 (29%), Gaps = 159/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVL 57 + +D ET S + D ++ +F ++ + Sbjct: 355 DVISLDTETTSTNAI----------DAQLVGLSFAVEEKKAYYVPVPEQANEAQNIVDKF 404 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K EN + V N ++ VL+ + + T++ + + E Sbjct: 405 KAIYENPNTLKVGQNIKYDLEVLRNY-GIMLQ-GPLFDTMIAHYLLQPELRHNMDFMAEV 462 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + LI K A Y D +T ++ L Sbjct: 463 Y--LNYETVHIDALIG---------AKGKTQKNMRELAPSEVYAYACEDADITLQLKNVL 511 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P E L + + G +D A +Q+ +L+QE+ Sbjct: 512 QPKLVEAGVERLFNEVEMPLIPVLAEMECNGVRIDTAALKETSQVFTERMLQLEQEIYQA 571 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF E + T+T T + VL + + P + + R Sbjct: 572 AG-KTFNVASPKQVGDILFGEMKIIDKPKKTKTGQYVTSEEVLQTLRSKHPIVAHILDYR 630 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N T + TGR S QN+P +E Sbjct: 631 -ALKKLLGTYVDALPKLINPRTGHIHTSFNQAVTATGRLSSSDPNLQNIPVRGEDGKE-- 687 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R C I EG + AD + IE RV+A ++ + L Sbjct: 688 -----------------------IRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANMLD 724 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ T A+ ++ ++VT+D+R K + G+ + Sbjct: 725 AFREGYDIHSATAAKIYDKPVSEVTRDERTKAKRANFGII--------------YGITVF 770 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A + A +++ + + +V + Sbjct: 771 GLADRLNIERA------------------------------EAKQLIDGYFKMFPQVRDY 800 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + + N + R D+ ++ + + Sbjct: 801 MEQAKETAK--------------------------ANGYVETFFHRRRYLPDINSSNATV 834 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 R +Q + DI+ M+ ++L VHDE+ Sbjct: 835 RGI---AERNAINAP------IQGSAADIIKVAMVRIFQRFQRENIRSKMILQVHDELNF 885 Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 T++ + M + + +PL A+G + Sbjct: 886 SVLPTEKELVERIVMEEMQAA--YPLDVPLVADGGWGNNW 923 >gi|146313733|ref|YP_001178807.1| DNA polymerase I [Enterobacter sp. 638] gi|145320609|gb|ABP62756.1| DNA polymerase I [Enterobacter sp. 638] Length = 930 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 106/701 (15%), Positives = 213/701 (30%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD + Sbjct: 355 AFDTETDSLDNIS----------ANMVGLSFATEPGMAAYVPVAHDYLDAPNQISRERVL 404 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ V N F+R +L+ +++ + T++ + +V Sbjct: 405 ELLKPLLEDEKAKKVGQNLKFDRGILQNY-GIELRGIAY-DTMLESYILN------SVAG 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 457 RHDMDSLSDRWLK---HKTVTFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 513 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K+ L + I G +D A+ H ++ + + ++L+Q+ Sbjct: 514 MWPKLQKQEGPLNVFEHIEMPLVPVISRIERNGVKIDPAVLHKHSEELALRLSELEQKAH 573 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 574 EIAG-EPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILQY 632 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 633 R-GLAKLKSTYTDKLPLMINPKTSRVHTSYHQAVAATGRLSSTEPNLQNIPVRNEEGRR- 690 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA + +V AD + IE R++A ++ ++ L Sbjct: 691 ------------------------IRQAFIAPKDYLIVSADYSQIELRIMAHLSRDKGLL 726 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT DQR K + G++ Sbjct: 727 TAFAEGKDIHRATAAEVFGLPLDSVTNDQRRSAKAINF--------------GLIYGMS- 771 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + ++ + +++ V E Sbjct: 772 -----------------------------AFGLSRQLNIPRKESQKYMDLYFERYPGVLE 802 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ + Sbjct: 803 YMERTRAQAKE--------------------------KGYVETLDGRRLYLPDITSSNAA 836 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 + +Q + DI+ M+ K +++ VHDE+V Sbjct: 837 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLEKDKPRVRMIMQVHDELV 887 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E D ++ LM + + +PL E + + Sbjct: 888 FEVHHEDLEAVSKKIHELMEGSMT--LDVPLLVEVGSGENW 926 >gi|254524679|ref|ZP_05136734.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14] gi|219722270|gb|EED40795.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14] Length = 924 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 101/706 (14%), Positives = 200/706 (28%), Gaps = 169/706 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + D ET + + ++ + + HD + Sbjct: 348 ISFDTETDALDAMR----------ARLVGVSLAVEPGRAAYIPVGHDYPGAPAQLPMQQV 397 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110 L+ L++ + + ++ VL+ +D+ + T++ + + Sbjct: 398 LDALRPVLQDPAKKKLGQHGKYDLHVLRRH-GVDVQGYH-DDTMLESFVLNSTATRHDMD 455 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 ++ G I K E + P + Y D +T Sbjct: 456 SLALRY--------LGYSTI----KFEDVAGKGAKQIPFSQVGIDEASRYAAEDADITLR 503 Query: 171 IFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L+P E L + TI G +D +Q + Sbjct: 504 LHRALQPQLLAEPALDSVYRDIEMPLVPVLTTIEANGVRIDTDELRRQSQDLSSRMLAAQ 563 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQ 275 Q+ L + ++L+ LF E L +T + L + + Sbjct: 564 QKATELAG-RSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEALEAIAEQHELPRV 622 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + R ++ + L E +N + GR+ + GA+ TGR S QN+P + Sbjct: 623 ILEYR-GLAKLRSTYTDKLPEMVNPETGRVHTSYHQSGAA-TGRLSSSDPNLQNIPIRTE 680 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R +A EG +L+ AD + IE R++A ++ Sbjct: 681 DGRR-------------------------IRRAFVAPEGCQLLAADYSQIELRIMAHLSE 715 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + ++AFE G D++ T A F +VT ++R K + Sbjct: 716 DPGLVRAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINF--------------GLM 761 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ A + + ++ Sbjct: 762 YGMS------------------------------AFGLARNLGIDRGQAQDYVALYFSRY 791 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + + Q + GR L D+ Sbjct: 792 PGVRDFMERMRQQARD--------------------------QGYVETLFGRRLYLNDIH 825 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628 L R +Q + DI+ M++ + A ++L V Sbjct: 826 ARNQGLR---AGAERAAINAP------MQGTAADIIKRAMVDVDQWLRDSGAPARMILQV 876 Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V ET + + + M+ +PL + + Sbjct: 877 HDELVFETESSFVEDLRLQVVERMSQAAK--LRVPLVVDTGIGSNW 920 >gi|290466795|gb|ADD25725.1| putative DNA polymerase [Lactococcus phage 1358] Length = 653 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 222/698 (31%), Positives = 316/698 (45%), Gaps = 69/698 (9%) Query: 1 MAT-LFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVL 57 M L ID ET S +DL CG+ +YA + LF++ F D PV D V+P + Sbjct: 1 MKKPLHIDIETFSDVDLAGCGVYRYAASPAFYIQLFSYRFGDEPVTRLDLQQGDVIPSKV 60 Query: 58 KEALENTDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 AL + VAHN+ FER + + W CT+V GLP +L +G+AL Sbjct: 61 LRALRDPKRIKVAHNAQFERVCIGYELDGRPLDPTNWRCTMVWGSCLGLPQSLDGMGKAL 120 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 L QK +EGK LI F CK +N P H E W +G+Y + DV V I Sbjct: 121 GLDVQKDKEGKRLIQYFSKPCKPTKANGGRTQNLPEHAPEDWEHYGKYNEIDVEVETGIS 180 Query: 173 KR---LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + + L + E + DQ IND G VDV ++ D + + +L LT Sbjct: 181 DKLAAIYELPADEWRGYENDQRINDAGVPVDVPFVRQAIKLKDKLKKRSSMKLRRLTG-- 238 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS--SNKKLTPQAIQVFNNRMRASRSA 287 V S +++LK W + G +E L + C+ L+ + P+ ++ A +A Sbjct: 239 VESVTKVQQLKAWAAAQ-GYPVESLDKQHCEDYLNDPELHQDFPEVYRMIELYQEAGGAA 297 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K + ++ + DG ++G L+F GA T RW+G QNLPR ++L+ + Sbjct: 298 VAKYDKIMAQLMPDGTIKGQLRFCGAGATARWAGKGVQVQNLPRVYLKADKLEAARQIVA 357 Query: 348 TSI----TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +P+ +I+ VR+ + + V+D + IEARV+AW AGE W LKAFE Sbjct: 358 KGKTVGLKKFGNPIDVITQLVRTSLKPPTDYEFGVSDYSAIEARVVAWFAGESWVLKAFE 417 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 GED+YV T ++ ++V + R GK LALGYQGGA A M Sbjct: 418 DGEDIYVATASKMYHVTGEEAEA-MRQKGKQATLALGYQGGANALIVMG----------- 465 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 A+ + + WR+ + + LW+ Sbjct: 466 -----------------------------ALRAGIPEEELPELVQLWRKANPNIVNLWHT 496 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG---NNRSYL 580 + +A I NG A ++ K D++ L + LPSGR L Y D N SYL Sbjct: 497 VDKAARMAINNGGAKRYVLADGKLVISYKGDEHVLQVQLPSGRKLNYFDCKIRDNKISYL 556 Query: 581 NTTTRQLTR--EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 +R TYGGKLTEN+VQA SRD+L +M AG V VHDE + P+ Sbjct: 557 KGVRGDGSRFYADTYGGKLTENLVQATSRDLLLAALMRIEAAGIQTVFHVHDETINIVPE 616 Query: 639 TDEFNASMLYHLMTS-NPSWAKGLPLKAEGYESKRYRK 675 + +LMTS P WA GLPL +EG K YRK Sbjct: 617 G--TKIEEINNLMTSPAPEWADGLPLDSEGDVIKYYRK 652 >gi|110636269|ref|YP_676477.1| DNA polymerase I [Mesorhizobium sp. BNC1] gi|110287253|gb|ABG65312.1| DNA polymerase I [Chelativorans sp. BNC1] Length = 978 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 103/716 (14%), Positives = 204/716 (28%), Gaps = 175/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET S + + A + H Sbjct: 389 VVALDTETTSLDPM----------QAELCGIALATAPNRAAYLPLSHKNGAEDLLGGGMV 438 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 VL+ L++ V + N ++ +L I I + T++++ Sbjct: 439 DGQIRVEEALAVLRPLLQDPSVLKIGQNLKYDWVLLYRH---GIEIAPYDDTMLISYVLE 495 Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + A+ E G ++ + Y Sbjct: 496 AGTQAHGMDALAERW--------LGHTPVSY----KEVTGSGRSKVTFDMVGLERATVYA 543 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT ++K L+P E+ + + + RG VD + ++ Sbjct: 544 SEDADVTLRLWKVLKPQLAAKGLVSVYERLERPMVSVICRMEHRGIMVDRQILSRMSGDF 603 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK 267 +++E+ L G + ++L LF GL T++ T +VL Sbjct: 604 AQTAAAMEEEIYRLAGGR-FTIGSPKQLGDILFGRMGLPGGAKTKSGQWSTSAQVLEELA 662 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + + ++ + L ++ + T L ++ TGR S Q Sbjct: 663 AAGHELPRKIVDWRQVTKLKSTYTDALPGYIHPETGRVHTSYSLASTTTGRLSSSEPNLQ 722 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA+ G KL+ AD + IE R Sbjct: 723 NIPVRTPEGRK-------------------------IRTAFIAAPGYKLISADYSQIELR 757 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A KAF G D++ T + F V + + R K + Sbjct: 758 VLAHVADIPELKKAFAEGMDIHAMTASEMFGVPVEGMPGEVRRRAKAINF---------- 807 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + Sbjct: 808 ----GIIYGISAFGLANQLSI------------------------------PRDEAGAYI 833 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 K + ++ + + + + GR Sbjct: 834 KRYFERFPGIRDYMERTKAFCRE--------------------------KGYVETIFGRR 867 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY----- 622 Y ++ ++ + R +Q + DI+ MM A Sbjct: 868 AHYPEIRSSNP---SVRAFNERASINAP------IQGSAADIIRRAMMRMEAALADSGLV 918 Query: 623 --DIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E P+ ++ +M P+ + +PLK + + + Sbjct: 919 DVKMLLQVHDELVFEAPEDAIERAIPVIRTVMEGAAWPARSLSVPLKVDARAADNW 974 >gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666] gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666] Length = 944 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 105/706 (14%), Positives = 200/706 (28%), Gaps = 167/706 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + +D ET S ++ ++ +F HD + Sbjct: 370 VAVDTETTSLDEML----------AQIVGISFSVTPGEAAYIPLTHDYPDAPAQLPRDEV 419 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKA 111 LK LEN + + + ++R V +++ + T++ + + P L + Sbjct: 420 LARLKPWLENPAIAKLGQHVKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEVHKPHGLAS 477 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E G+ I E ++ EY D T ++ Sbjct: 478 LAERH--------VGRSGINY----EDLCGKGVHQIKFNQVDIAKAAEYSCEDSDQTLDV 525 Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P + I G +D + + +L+ E Sbjct: 526 HRVLWPQIEANDKLRFVYELEMKSSETLYRIERNGVLIDAPTLAKQSGELGARIVQLEAE 585 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 L + +++ F + GL + T + T + VL + P ++ Sbjct: 586 AHELAGQP-FNLGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKIL 644 Query: 278 NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R S+ + L + + GR+ A TGR S QN+P + Sbjct: 645 EHR-GLSKLKGTYTDKLAQLAHPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPVKTAEG 702 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 VR +A G + AD + IE R++A ++ ++ Sbjct: 703 RR-------------------------VREAFVAPAGSVIASADYSQIELRIMAHLSEDE 737 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF G D++ T A F VA QV+ +QR G Sbjct: 738 ALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYA--------------KVINFGLIYG 783 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A A + Q++ Sbjct: 784 MSSFGL------------------------------ARNLGIETKAAAAYIDRYFQRYPG 813 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V +E + + + GR L ++ + Sbjct: 814 VKHYMDETRLSAKS--------------------------KGYVETVFGRRLYLPEINSP 847 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHD 630 R +Q + D++ M+ K +++ VHD Sbjct: 848 NGPRRG---GAERAAINAP------MQGTAADLIKLSMVKVQEVLDAEKRATKMIMQVHD 898 Query: 631 EIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E+V E P+ + + +M +PL AE + K Sbjct: 899 ELVFEVPEAEVEWVRVEIPRIMAGVAD--LRVPLLAEIGVGPNWDK 942 >gi|254472124|ref|ZP_05085524.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062] gi|211958407|gb|EEA93607.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062] Length = 980 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 107/716 (14%), Positives = 197/716 (27%), Gaps = 175/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51 + +D ET + + ++ + H Sbjct: 391 YVAVDTETDALNAMESG----------LVGVSLSCTPGKACYIPLAHVDGEGDLLGGGAL 440 Query: 52 --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 +LK LE+ V +A N ++ VLK + + + T++L+ + Sbjct: 441 LEGQIPLAEAITLLKPMLEDPAVLKIAQNMKYDWLVLKRY---GVEMAPFDDTMLLSYAL 497 Query: 104 GLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + + L + + Y Sbjct: 498 DAGMGGNGMDELSQR------------WLNHTPIPFKEVCGSGKSQISFDKVPLDKATAY 545 Query: 161 CKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 D VT ++K L+P E+ + + RG +D + L+ Sbjct: 546 AAEDADVTLRLWKILKPRLAAEEMTVVYERLERPMVATLAKMERRGISIDRQMLSLLSGE 605 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266 +L+ E+ + + + ++L LF + GL T+ +T VL Sbjct: 606 FAQGAARLESEIHDVAG-EIFNVGSPKQLGEILFGKMGLPGGKKTKTGAWSTSASVLDDL 664 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + + S+ + L +N + T L ++ TGR S Sbjct: 665 AAQGHELPSKIVEWRQLSKLKSTYTDALPSFINQETGRVHTSFSLASTSTGRLSSSEPNI 724 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P + + +R IA +GKKL+ AD + IE Sbjct: 725 QNIPIRTSEGRK-------------------------IRQAFIAEKGKKLISADYSQIEL 759 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA MA +AF G D++ T + F V + R K + Sbjct: 760 RVLAHMADIPQLKQAFADGLDIHAMTASEMFGVPIEGMDPMVRRRAKAINF--------- 810 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ A + Sbjct: 811 -----GIIYGIS------------------------------AFGLANQLGIARGEAGDY 835 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 K + ++ + + E + N + GR Sbjct: 836 IKTYFERFPGIKDYMEETKKFVH--------------------------ANGYVETIFGR 869 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------A 620 Y DV + R +Q + DI+ M+ + Sbjct: 870 RAHYPDVNTKNPNMRQF---YERAAINAP------IQGSAADIIRRAMVRMDEVLETANL 920 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ L M P+ +PLK E + + Sbjct: 921 DAQMLLQVHDELIFELPEDQVDETKKLVIATMEKATEPALQLSVPLKVEAEAADNW 976 >gi|78224176|ref|YP_385923.1| DNA polymerase I [Geobacter metallireducens GS-15] gi|78195431|gb|ABB33198.1| DNA polymerase I [Geobacter metallireducens GS-15] Length = 892 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 104/707 (14%), Positives = 189/707 (26%), Gaps = 168/707 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPV 52 T +D ET S L + ++ + + DH H Sbjct: 314 TFAVDLETTSLNPL----------EAEIVGISLSYRDHEACYIPVGHFYLGAPEQLPRRR 363 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSAL 109 + L L + + V N ++ V + +++ W T+V + L Sbjct: 364 VLDALTPLLIDPKIRKVGQNLKYDYQVFRRH-GIEL-GGVWCDTMVASYLLNPVRSGHGL 421 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 ++ ++I+ E + Y D Sbjct: 422 DSLAVEH--------LDHKMISY----EEVAGKGKEQVNFAQVPVEKASTYSCEDSDAAW 469 Query: 170 EIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + P E L + + G +D+ L L+ + +L+ Sbjct: 470 LLHRLFLPRVAVWGMERLFFDVEMPLVPILAEMELAGVKLDLPLLGELSAGFGKQLAELE 529 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT-----ETTCQRVLSSNKKLTPQAI 274 + L + ++L LF + L T +T L + + Sbjct: 530 GRITGL-APEPFNLNSPKQLGEVLFEKLKLPTGKKTKTKTGWSTNVEELERLAEAGHEIA 588 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + ++ + L + + GR+ + + TGR S QN+P + Sbjct: 589 ALILQYRGLAKLKSTYTDALPKLVQPATGRVHTSYNQ-TVTNTGRLSSSEPNLQNIPVRT 647 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R IA EG L+ AD + IE RVLA + Sbjct: 648 EEGRR-------------------------IRRAFIAEEGHLLLSADYSQIELRVLAHFS 682 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ AF ED++ T A F + P VT + R Sbjct: 683 EDRVFCDAFAKDEDIHTRTAAEVFGLFPEMVTPEMRRQA--------------------- 721 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 A NF + A + + + Sbjct: 722 -----------------------KAINFGVIYGQGAFSLAKQLGIATKVAREFIDNYFAR 758 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 H + + E G GR L D+ Sbjct: 759 HPGARAFLDGC---VREAEEKGHVTTLL-----------------------GRRLPIPDI 792 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLT 627 + + ++ +Q + DI+ E M+ T G +++ Sbjct: 793 KSANGNIRAFAQRN---------AVNYPIQGSAADIIKEAMVKVTARMRRDVVGSRLIMQ 843 Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E P + L M S +PLK + + Sbjct: 844 VHDELVFEVPKGEVVAMEQLVRREMEHAVS--LRVPLKVDINHGGNW 888 >gi|147675220|ref|YP_001218310.1| DNA polymerase I [Vibrio cholerae O395] gi|262167045|ref|ZP_06034762.1| DNA polymerase I [Vibrio cholerae RC27] gi|146317103|gb|ABQ21642.1| DNA polymerase I [Vibrio cholerae O395] gi|227011890|gb|ACP08100.1| DNA polymerase I [Vibrio cholerae O395] gi|262024563|gb|EEY43247.1| DNA polymerase I [Vibrio cholerae RC27] Length = 934 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 203/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + HD + Sbjct: 358 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 407 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 408 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 465 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ A +Y D VT + + Sbjct: 466 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 515 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G +D L +Q + + +L+Q Sbjct: 516 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 575 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 576 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 634 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 635 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 693 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 694 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 728 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 729 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 774 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 775 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 804 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + Q + GR L ++ + + Sbjct: 805 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 838 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 839 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 889 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S A +PL AE + Sbjct: 890 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930 >gi|254851493|ref|ZP_05240843.1| DNA polymerase I [Vibrio cholerae MO10] gi|254847198|gb|EET25612.1| DNA polymerase I [Vibrio cholerae MO10] Length = 934 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 203/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + HD + Sbjct: 358 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 407 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 408 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 465 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ A +Y D VT + + Sbjct: 466 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 515 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G +D L +Q + + +L+Q Sbjct: 516 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 575 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 576 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 634 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 635 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 693 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 694 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 728 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 729 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 774 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 775 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 804 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + Q + GR L ++ + + Sbjct: 805 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 838 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 839 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 889 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S A +PL AE + Sbjct: 890 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930 >gi|229844734|ref|ZP_04464873.1| DNA polymerase I [Haemophilus influenzae 6P18H1] gi|229812448|gb|EEP48138.1| DNA polymerase I [Haemophilus influenzae 6P18H1] Length = 930 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 100/705 (14%), Positives = 213/705 (30%), Gaps = 165/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51 + +D ET S ++ ++ +F ++ + Sbjct: 354 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 +K LEN ++ + N F+ ++ +++ T++L+ + + Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 461 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G E IA E+ ++ + EY D VT Sbjct: 462 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLQQATEYAAEDADVTM 509 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L E L ++ + G +D + + T L Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTAL 569 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 +++ +L + ++L+ LF + GL +T + VL Sbjct: 570 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 627 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ S+ + L + +NS T + TGR S QN+P + Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA EG +V AD + IE R++A ++G Sbjct: 688 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 722 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF G+D++ +T A F V+ +VT +QR K + Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------GLI 768 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + + ++ + Q++ Sbjct: 769 YGMS------------------------------AFGLSRQLGISRPDAQKYMDLYFQRY 798 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + ++ + + GR L D+ Sbjct: 799 PSVQQFMTDIRAKAK--------------------------AQGYVETLFGRRLYLPDIN 832 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629 ++ + + R +Q + DI+ M+ + ++++ VH Sbjct: 833 SSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVH 883 Query: 630 DEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + F + + + +PL E + + Sbjct: 884 DELVFEVRSEKVAFFREQIKQHIEAAAELV--VPLIVEVGVGQNW 926 >gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153822326|ref|ZP_01974993.1| DNA polymerase I [Vibrio cholerae B33] gi|227080344|ref|YP_002808895.1| DNA polymerase I [Vibrio cholerae M66-2] gi|255743936|ref|ZP_05417891.1| DNA polymerase I [Vibrio cholera CIRS 101] gi|298501121|ref|ZP_07010921.1| DNA polymerase I [Vibrio cholerae MAK 757] gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126520152|gb|EAZ77375.1| DNA polymerase I [Vibrio cholerae B33] gi|227008232|gb|ACP04444.1| DNA polymerase I [Vibrio cholerae M66-2] gi|255738419|gb|EET93809.1| DNA polymerase I [Vibrio cholera CIRS 101] gi|297540155|gb|EFH76216.1| DNA polymerase I [Vibrio cholerae MAK 757] Length = 934 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 203/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + HD + Sbjct: 358 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 407 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 408 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 465 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ A +Y D VT + + Sbjct: 466 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 515 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G +D L +Q + + +L+Q Sbjct: 516 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 575 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 576 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 634 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 635 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 693 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 694 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 728 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 729 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 774 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 775 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 804 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + Q + GR L ++ + + Sbjct: 805 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 838 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 839 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 889 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S A +PL AE + Sbjct: 890 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930 >gi|237747176|ref|ZP_04577656.1| DNA polymerase I [Oxalobacter formigenes HOxBLS] gi|229378527|gb|EEO28618.1| DNA polymerase I [Oxalobacter formigenes HOxBLS] Length = 913 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 105/701 (14%), Positives = 202/701 (28%), Gaps = 162/701 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 +D ET S +T ++ + H + Sbjct: 339 SLDTETTSLDSMT----------ARLVGISLSVKPGFAAYIPLAHHPIEVAKQLPLDHVL 388 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + LK LEN V N ++ + + + TL+ + Sbjct: 389 KKLKSWLENPAKKKVGQNLKYDSHIFANYH-IHLQGIA-HDTLLESYVLESHRRHDMDSL 446 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + +L K E + Y D +T ++ + Sbjct: 447 SERLLDYKPIS----------YEEICGKGASQIGFDQIELDCATRYAAEDADITFQLHEN 496 Query: 175 LEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K + + + Q + G +D L + + ++ +L+++ Sbjct: 497 MWPRIEKNEGLRFIYEKIEIPVSLVLQKMERNGVLIDPDLLLGQSSELALKIDELEKKAY 556 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 S+ + ++L LF + GL L T + T + VL P + + Sbjct: 557 SV-AEQSFNLNSPKQLAEILFDKLGLPLVKKTPSGAPSTSEEVLEKLALDYPLPKIILDF 615 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N + T + TGR + QN+P + Sbjct: 616 R-GMAKLKSTYTDKLPRMINPETGRVHTNYAQAVAVTGRLASNDPNLQNIPVKTEEGRR- 673 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA G +V AD + IE R++A ++ + L Sbjct: 674 ------------------------IREAFIAPAGCYIVSADYSQIELRIMAHLSDDPGLL 709 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 KAF G+D++ T + F++AP +VT +QR G++ Sbjct: 710 KAFREGQDVHKATASEIFDIAPLEVTPEQRRYA--------------KVINFGLIYGMS- 754 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A T + + +++ V+E Sbjct: 755 -----------------------------AFGVASNLGISRTDAKNYIDRYFRRYPGVAE 785 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + Q + + GR L ++ + Sbjct: 786 YMDAIRQTARE--------------------------QGYVETVFGRRLWLPEINSPNGP 819 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633 R +Q + DI+ M+ + +++ VHDE+V Sbjct: 820 RRQA---AERAAINAP------MQGTAADIIKLSMIAVNDWIENEQLESKLIMQVHDELV 870 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E PD + L LM S +PL A+ K + Sbjct: 871 LEVPDKELERVRKRLPELMGQVAS--LKVPLIADVGFGKNW 909 >gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6] gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6] Length = 931 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 103/703 (14%), Positives = 202/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + HD + Sbjct: 355 AFDTETDSLDYMV----------ANLVGLSFAVAEGEAAYVPVAHDYLDAPEQLDRDWVL 404 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +VL +++ + T++ + Sbjct: 405 AQLKPLLEDDTKAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDS 462 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ ++L ++ Y D VT + Sbjct: 463 LALRFLQHSCISFEQL----------AGKGKNQLTFNQIDLNEAAVYAAEDADVTLRLHN 512 Query: 174 RLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL +++ L + + G +D +Q + V +L+Q+ Sbjct: 513 RLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLIDDMKLSAQSQEIAVRLGELEQKA 572 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+T LF + GL T +T + VL P + Sbjct: 573 YEIAGQP-FNMNSPKQLQTILFEQMGLPVIKKTPSGTPSTAEEVLQELALDYPLPSVIME 631 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 632 YR-GLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 690 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 691 -------------------------IRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQAL 725 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF+ G+D++ T A V+ QV+ +QR K + G++ Sbjct: 726 LDAFQQGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVN--------------FGLIYGMS 771 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 772 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 801 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + Q + + GR L ++ + Sbjct: 802 QYMEDTRSNAAQ--------------------------HGYVETIFGRRLHLPEITSRNV 835 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631 + R +Q + DI+ + M+ +++ VHDE Sbjct: 836 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 886 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S +PL AE + Sbjct: 887 LVFEVEESCLTEIESKVQQLMESAAQ--LNVPLVAEAGHGDNW 927 >gi|327483012|gb|AEA77419.1| DNA polymerase I [Vibrio cholerae LMA3894-4] Length = 934 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 203/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + HD + Sbjct: 358 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVI 407 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 408 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 465 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ A +Y D VT + + Sbjct: 466 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 515 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G +D L +Q + + +L+Q Sbjct: 516 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 575 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 576 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 634 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 635 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 693 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 694 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 728 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 729 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 774 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 775 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 804 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + Q + GR L ++ + + Sbjct: 805 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 838 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 839 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 889 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S A +PL AE + Sbjct: 890 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930 >gi|229508387|ref|ZP_04397891.1| DNA polymerase I [Vibrio cholerae BX 330286] gi|229508932|ref|ZP_04398422.1| DNA polymerase I [Vibrio cholerae B33] gi|229517046|ref|ZP_04406492.1| DNA polymerase I [Vibrio cholerae RC9] gi|229606661|ref|YP_002877309.1| DNA polymerase I [Vibrio cholerae MJ-1236] gi|229346109|gb|EEO11081.1| DNA polymerase I [Vibrio cholerae RC9] gi|229354049|gb|EEO18982.1| DNA polymerase I [Vibrio cholerae B33] gi|229354660|gb|EEO19582.1| DNA polymerase I [Vibrio cholerae BX 330286] gi|229369316|gb|ACQ59739.1| DNA polymerase I [Vibrio cholerae MJ-1236] Length = 906 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 203/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + HD + Sbjct: 330 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 379 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 380 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 437 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ A +Y D VT + + Sbjct: 438 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 487 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G +D L +Q + + +L+Q Sbjct: 488 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 547 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 548 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 606 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 607 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 665 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 666 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 700 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 701 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 746 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 747 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 776 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + Q + GR L ++ + + Sbjct: 777 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 810 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 811 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 861 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S A +PL AE + Sbjct: 862 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 902 >gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908] gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908] Length = 945 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 104/709 (14%), Positives = 206/709 (29%), Gaps = 170/709 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 + ID ET S +T ++ +F + HD Sbjct: 366 DLIAIDTETTSLDYMT----------AKLVGISFAVEVGKAAYLPLAHDYLDAPEQLDFD 415 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 LK LE+ + V N ++ ++ + + T++ + Sbjct: 416 EAIAKLKPLLEDPKLKKVGQNLKYDISIFAN-VGIKLQGVA-FDTMLESYVFNSVASKHN 473 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + + G + I+ E + ++ Y D +T Sbjct: 474 MDDLALKY--------LGHKNISF----EEIAGKGAKQLTFNQIDLETAAPYAAEDADIT 521 Query: 169 REIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + + L E L + I +G +D + +Q + + K Sbjct: 522 LRLHQHLWARLEKEPKLASVFTDIELPLVQVLSKIERQGVLIDSMMLGQQSQEIAISIDK 581 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+Q+ + + ++L+ F + G + T +T + VL P Sbjct: 582 LEQDAFEIAG-ETFNLSSPKQLQALFFEKLGYPVIKKTPKGAPSTAEEVLVELALDYPLP 640 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + +R ++ + L +N+ GR+ + A+ TGR S QN+P Sbjct: 641 KIILQHR-SLAKLKSTYTDKLPLMVNAQSGRVHTSYHQANAA-TGRLSSSEPNLQNIPIR 698 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +R IA EGKK++ AD + IE R++A + Sbjct: 699 TEEGRR-------------------------IRHAFIAQEGKKVLAADYSQIELRIMAHL 733 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F V ++VT +QR K + Sbjct: 734 SQDKGLLTAFAEGKDIHKATAAEVFGVDFSEVTTEQRRRAKAVNF--------------G 779 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ A + ++ + Sbjct: 780 LIYGMSAFGLARQLDI------------------------------PRGEAQKYIDTYFD 809 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ V + + + + GR L Sbjct: 810 RYPGVLKYMEDTRAEA--------------------------ADLGYVSTLYGRRLYLPA 843 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIV 625 + + + R +Q + DI+ + M+N ++ Sbjct: 844 IKDRNAMRRQA---AERAAINAP------MQGTAADIIKKAMINIASWIESETHGEITMI 894 Query: 626 LTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + VHDE+V E + +M S + L AEG + Sbjct: 895 MQVHDELVFEVDSDKAEALKEQICKMMADAVS--LDVELLAEGGIGDNW 941 >gi|229527149|ref|ZP_04416543.1| DNA polymerase I [Vibrio cholerae 12129(1)] gi|229335380|gb|EEO00863.1| DNA polymerase I [Vibrio cholerae 12129(1)] Length = 906 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 203/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + HD + Sbjct: 330 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVI 379 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 380 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 437 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ A +Y D VT + + Sbjct: 438 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 487 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G +D L +Q + + +L+Q Sbjct: 488 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 547 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 548 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 606 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 607 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 665 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 666 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 700 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 701 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 746 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 747 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 776 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + Q + GR L ++ + + Sbjct: 777 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 810 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 811 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 861 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S A +PL AE + Sbjct: 862 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 902 >gi|114769975|ref|ZP_01447585.1| DNA polymerase I [alpha proteobacterium HTCC2255] gi|114549680|gb|EAU52562.1| DNA polymerase I [alpha proteobacterium HTCC2255] Length = 932 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 91/714 (12%), Positives = 195/714 (27%), Gaps = 174/714 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET D+ ++ + H Sbjct: 346 YVAVDTETTGLNDMIV----------DLVGICLSVEIGEACYIPVGHTNGENDLFGGASL 395 Query: 51 -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 ++L+ L++ + + N ++ + D+ + T++L+ + Sbjct: 396 CNGQINLDEALEILRPVLQDPSIIKIGQNVKYDTKIFARY---DVNLAPVDDTMLLSYAI 452 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + E + K K L+ + + Y Sbjct: 453 NGGKHNHGMDYLSERY--LNHKPISIKTLL----------GSGKSAITFDKVSINDAVNY 500 Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T ++K +P+ + E+ L + + G VD ++ Sbjct: 501 AAEDADITLRLWKLFKPMLHESSVTKIYETLERPLIPVLAKMEMNGIKVDRNTLSRMSNN 560 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266 + L+ E+ +L + ++L LF + L +T T VL Sbjct: 561 FAQSMSGLEAEIYNLAGQT-FNVGSPKQLGEILFDKLELPGGKKGKTGAYGTGVDVLEDL 619 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + + + S+ + L +N + T + + TGR S Sbjct: 620 ASEGHELPVKVLDWRQMSKLKSTYTDALQGHINPNTGRVHTSYVISGASTGRLSSTDPNL 679 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P S + + +R IA EG L+ D + IE Sbjct: 680 QNIPIRSEAGRK-------------------------IREAFIAEEGNVLLSLDYSQIEL 714 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA +A +AF G+D++ T ++ FNV + R K + Sbjct: 715 RILAHIAKIDTLKQAFHEGQDIHALTASQMFNVPLENMDPMVRRQAKAIN---------- 764 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ A + Sbjct: 765 ----FGVIYGIS------------------------------GFGLARNLRIPRKEAQSF 790 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + ++ + +E ++ N + GR Sbjct: 791 IDTYFERFPGIRTYMDETVSFAKE--------------------------NGYVETLFGR 824 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY 622 + ++ R +Q + D++ M+ + Sbjct: 825 KIHTSEINAK----GPQAGFAKRAAINAP------IQGTAADVIRRAMVQMPNAISHLPA 874 Query: 623 DIVLTVHDEIVCETPDTDE-FNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E ++ ++M P +PL + + Sbjct: 875 KMLLQVHDELIFEVNKDALNETTEVVRNIMEKASEPVVKLDVPLVVDAGFGNNW 928 >gi|190576375|ref|YP_001974220.1| DNA polymerase I [Stenotrophomonas maltophilia K279a] gi|190014297|emb|CAQ47944.1| putative DNA polymerase I [Stenotrophomonas maltophilia K279a] Length = 924 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 101/709 (14%), Positives = 197/709 (27%), Gaps = 171/709 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 + D ET + + ++ + + HD Sbjct: 346 DLISFDTETDALDAMR----------ARLVGISLAVEPGRAAYIPVGHDYPGAPAQLPMQ 395 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLP---S 107 + L+ L++ + + ++ VL+ + + + T++ + Sbjct: 396 QVLDALRSVLQDPAKKKLGQHGKYDLHVLRRH---GVQVQGYHDDTMLESFVLNSTATRH 452 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 + ++ G I K E + P + Y D + Sbjct: 453 DMDSLALRY--------LGYSTI----KFEDVAGKGAKQIPFSQVGIDEASRYAAEDADI 500 Query: 168 TREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 T + L+P E L + +I G VD +Q + Sbjct: 501 TLRLHHALQPQLLAEPALDSVYRGIEMPLVPVLASIEANGVRVDTDELRRQSQDLSSRML 560 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQ 272 Q+ L + ++L+ LF E L +T + L + Sbjct: 561 AAQQKATELAG-RSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEALEAIADQHEL 619 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + R ++ + L E +N D GR+ + GA+ TGR S QN+P Sbjct: 620 PRVILEYR-GLAKLRSTYTDKLPEMVNPDTGRVHTSYHQSGAA-TGRLSSSDPNLQNIPI 677 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + +R +A EG +L+ AD + IE R++A Sbjct: 678 RTEDGRR-------------------------IRRAFVAPEGFQLLAADYSQIELRIMAH 712 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ + ++AFE G D++ T A F +VT ++R K + Sbjct: 713 LSEDPGLVRAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINF-------------- 758 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ A + + Sbjct: 759 GLMYGMS------------------------------AFGLARNLGIDRGQAQDYVALYF 788 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ V + + Q + GR L Sbjct: 789 SRYPGVRDFMERMRQQARD--------------------------QGYVETLFGRRLYLN 822 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIV 625 D+ L R +Q + DI+ M++ + A ++ Sbjct: 823 DIHARNQGLR---AGAERAAINAP------MQGTAADIIKRAMVDVDQWLRDSGAPARMI 873 Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 L VHDE+V ET + + + M+ +PL + + Sbjct: 874 LQVHDELVFETESSFVEDLRLQVVERMSQAAK--LRVPLVVDTGVGNNW 920 >gi|197334225|ref|YP_002154843.1| DNA polymerase I [Vibrio fischeri MJ11] gi|197315715|gb|ACH65162.1| DNA polymerase I [Vibrio fischeri MJ11] Length = 932 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 97/705 (13%), Positives = 200/705 (28%), Gaps = 168/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + +I +F ++ HD + Sbjct: 356 AFDTETDSLDYMV----------ANLIGLSFAVEEGEAAYVPVAHDYLDAPEQLDRDWVL 405 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 + LK LE+ + V N ++ +VL ++++ + T++ + + + Sbjct: 406 EQLKPYLEDDNKAKVGQNLKYDASVLARY-DIEMKGIK-FDTMLESYVYNSVAGKHNMDS 463 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + I+ E + ++ A Y D +T + Sbjct: 464 LALRY--------LQHNTISF----EEIAGKGKKQLTFNQIALEQAAPYAAEDADITLRL 511 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L E L + + +G +D L + + +L++ Sbjct: 512 HHVLNAKLEADEKLKSVFTDIELPLVSVLSRMERKGVYIDDMLLSAQSLEIGQRLDELEK 571 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276 + + ++L+T LF + L + T + T + VL P + Sbjct: 572 AAFEVAG-EEFNMNSPKQLQTILFEKMELPVIKKTPSGAASTNEEVLQELALDYPLPKLI 630 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L + +N T + TGR S QN+P + Sbjct: 631 LEYR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 689 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R +A G K++ D + IE R++A ++ ++ Sbjct: 690 RR-------------------------IRQAFVAPHGWKILAVDYSQIELRIMAHLSQDK 724 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A V+ +VT + R K + G Sbjct: 725 ALLAAFSAGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINF--------------GLIYG 770 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + + + +++ Sbjct: 771 MSAFGLAKQI------------------------------GIPRGEAQDYMNVYFERYPG 800 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + E + + GR L ++ Sbjct: 801 VMQYMEETRLLATE--------------------------QGYVETLYGRRLHLPEINAR 834 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVH 629 + R +Q + DI+ + M+ K ++++ VH Sbjct: 835 NGMRR---KAAERAAINAP------MQGTAADIIKKAMILVDEWVETEGKDRVNLLMQVH 885 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + + + LM +PL AE + Sbjct: 886 DELVFEVKEDALDEVTTKVRELMEQAVQ--LDVPLVAEAGFGNNW 928 >gi|54293062|ref|YP_125477.1| DNA polymerase I [Legionella pneumophila str. Lens] gi|53752894|emb|CAH14329.1| DNA polymerase I [Legionella pneumophila str. Lens] Length = 896 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 102/700 (14%), Positives = 200/700 (28%), Gaps = 162/700 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVMPQV 56 ID ET + ++ + ++ H + Sbjct: 324 CIDTETTNLD----------VMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVLTA 373 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEA 115 LK LEN + + N ++ +VLK + + R+ T++ + + A Sbjct: 374 LKPILENPAIGKIGQNIKYDYSVLKNY-GITLKGIRY-DTMLESYVLNSGAGRHDMDSLA 431 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 LK K ++ + + G Y D +T + +L Sbjct: 432 LKYLGYKTISYED----------VAGKGAKQLRFDQIPVEKAGIYAAEDADITLRLHHKL 481 Query: 176 EPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P+ K + + G +D + + + L+QE L Sbjct: 482 YPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAIQLA 541 Query: 227 YGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L+ LF E L +T + VL + R Sbjct: 542 G-KAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELAFDYRLPAVILEYR-S 599 Query: 283 ASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ ++ L + +N R+ + A+ TGR S QN+P S Sbjct: 600 LSKLVSTYIDALPKRINPKTHRVHTSYNQAVAA-TGRLSSSDPNLQNIPIRSEEGR---- 654 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R+ IA EG ++ AD + IE R++A ++ + L+A Sbjct: 655 ---------------------LIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRA 693 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G D++ T + F V+K+QR K + G++ Sbjct: 694 FANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNF--------------GLIYGMSAFG 739 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 A + + + +++ +V E Sbjct: 740 LAKQI------------------------------GVERQDAQHYIDTYFRRYPKVLEYM 769 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + Q + GR L ++ + Sbjct: 770 ERTRKQAHQ--------------------------LGYVETLFGRRLYLPEINSRNLMR- 802 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-------YDIVLTVHDEIVC 634 + R G +Q + DI+ + M+ + +++ VHDE+V Sbjct: 803 --QKAAERTAINGP------MQGTAADIIKKTMLAVSNWEHSQKNPSAKMIMQVHDELVF 854 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E ++++ LM +PL + Sbjct: 855 EVRKEAVEECRAIIHKLMEQTVK--LSVPLVVSIGTGSNW 892 >gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1] gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1] Length = 932 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 103/705 (14%), Positives = 205/705 (29%), Gaps = 164/705 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---------- 52 + D ET S + ++ +F ++ HD + Sbjct: 354 VIAFDTETDSLDYMV----------ANLVGLSFAIEEGVAAYVPVAHDYIGAPEQLDRQW 403 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKA 111 + + LK LE+ + V N ++ +VL ++++ + T++ + Sbjct: 404 VLEQLKPLLEDDAIAKVGQNLKYDASVLARY-DIELKGIK-FDTMLASYVYNSVGGKHDM 461 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 AL+ E ++ Y D VT + Sbjct: 462 DSLALRFLQHS----------CISFEQIAGKGKAQLTFNQIDLEQASPYAAEDADVTFRL 511 Query: 172 FKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +RL K + L + I G +D L +Q + +L+Q Sbjct: 512 HQRLNAELEKNEALNRIYQDIEVPLVPVLSRIERTGVLIDDMLLGAQSQEIAARLDELEQ 571 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276 + + + ++L+T F + GL + T + T + VL P + Sbjct: 572 KAFEIAGQ-EFNLSSPKQLQTIFFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPLPKLI 630 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L + +N + T + TGR S QN+P + Sbjct: 631 LEYR-GLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 689 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA G K++ D + IE R++A ++G++ Sbjct: 690 RR-------------------------IRQAFIAPHGWKILAVDYSQIELRIMAHLSGDK 724 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF+ G+D++ T A V QVT +QR K + G Sbjct: 725 ALLDAFKNGKDIHAATAAEIIGVDIDQVTSEQRRRAKAINF--------------GLIYG 770 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + ++ + +++ Sbjct: 771 MSAFGLSKQ------------------------------LGIPRGEAQQYMDTYFERYPG 800 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + + + + GR L ++ + Sbjct: 801 VMQYMEDTRSLAAE--------------------------KGYVETIFGRRLHLPEIKSR 834 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVH 629 + R +Q + DI+ + M+ + +++ VH Sbjct: 835 NGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWVQAEGEGKVKLLMQVH 885 Query: 630 DEIVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V + S + LM S +PL AE + Sbjct: 886 DELVFEVESSSLSEIESKIQKLMESAAE--LDVPLVAEAGHGDNW 928 >gi|85710997|ref|ZP_01042058.1| DNA polymerase I [Idiomarina baltica OS145] gi|85695401|gb|EAQ33338.1| DNA polymerase I [Idiomarina baltica OS145] Length = 924 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 99/706 (14%), Positives = 204/706 (28%), Gaps = 164/706 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52 + D ET S Y E ++ +F + HD Sbjct: 344 VIAFDTETTSLN---------YME-AQLVGVSFSIAEGEAVYIPVAHDYVGVEKQVDRDW 393 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 + +VLK LE++ + V N ++ +L+ + + + T++ + + Sbjct: 394 LLKVLKPLLEDSSIAKVGQNLKYDAHILRRY-GIKLRGIK-NDTMLASYVFNSVGS---- 447 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + L + K E + ++ Y D +T + Sbjct: 448 ----RHDMDTLSLQY-LNHKPIKFEEIAGKGAKQLTFNQIELAQAAPYAAEDADITLRLH 502 Query: 173 KRLEPLSSKEQEL------------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L + E + + + G VD + ++ + + +L+Q Sbjct: 503 HILWDKVHQTGEQLASVLTDIEVPLVSILTDMEEYGVKVDAEMLGKQSEEIANKLDELEQ 562 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+ LF + L + T +T + VL P + Sbjct: 563 KAFEIAG-EEFNLGSPKQLQQILFEKLELPVIKKTPKGAPSTAEEVLQELAHDYPLPDVI 621 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R ++ + L +N D T + TGR S QN+P + Sbjct: 622 LQHR-SLAKLKSTYTDKLPRMINPDTGRVHTSYQQAVAATGRLSSTEPNLQNIPIRTPEG 680 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 VR +A EG +V D + IE R++A ++ + Sbjct: 681 RR-------------------------VRQAFVAEEGFTVVAIDYSQIELRIMAHLSQDA 715 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF G+D++ T + F + +VT +QR K + G Sbjct: 716 SLLRAFAQGQDIHRATASEVFGCSLEEVTDEQRRRAKAVNF--------------GLIYG 761 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + + + ++ Sbjct: 762 MSAFGLSRQLDI------------------------------PRHEAQAYMDKYFERFPG 791 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E + ++ + GR L ++ + Sbjct: 792 VLEYMENTRETAKK--------------------------QGYVSTLFGRRLPLPEIKAS 825 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY----DIVLTV 628 + +Q + DI+ M+ + G +++ V Sbjct: 826 NGARRKAAER---------AAINAPMQGTAADIIKRAMIKVGDWIDEKGCQSDVRMLMQV 876 Query: 629 HDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E + A L +M +PL AE + Sbjct: 877 HDELVFEIRTEHAESYAKALADVMGEAAD--LDVPLLAEYGFGANW 920 >gi|153830617|ref|ZP_01983284.1| DNA polymerase I [Vibrio cholerae 623-39] gi|148873889|gb|EDL72024.1| DNA polymerase I [Vibrio cholerae 623-39] Length = 934 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 202/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + HD + Sbjct: 358 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 407 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 408 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 465 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ A +Y D VT + + Sbjct: 466 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 515 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G +D L +Q + + +L+Q Sbjct: 516 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 575 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 576 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 634 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 635 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 693 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 694 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 728 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 729 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 774 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 775 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 804 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + Q + GR L ++ + Sbjct: 805 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNV 838 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 839 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 889 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S A +PL AE + Sbjct: 890 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930 >gi|163792693|ref|ZP_02186670.1| DNA polymerase I [alpha proteobacterium BAL199] gi|159182398|gb|EDP66907.1| DNA polymerase I [alpha proteobacterium BAL199] Length = 943 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 112/720 (15%), Positives = 209/720 (29%), Gaps = 176/720 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49 T+ D ET S + ++ + H Sbjct: 347 TVAFDTETTSLDCMR----------ADLVGVSLAVAPGKACYIPLRHVGRQAQGDLLGAG 396 Query: 50 -----DPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99 +P LK+ LEN V +AHN+ ++ VL N I + T+ L Sbjct: 397 PAEEAPKQIPFDTAMARLKDLLENPAVLKIAHNAKYDALVLSRPKNGGITVAPIDDTMCL 456 Query: 100 ARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156 + L + + G I K E Sbjct: 457 SYVLEGGLHGHGLDELAT--------LHLGHTNI----KFEEVCGKGKTQIGFAEAPIDK 504 Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQEL----------WYLDQTINDRGYCVDVALAHT 206 Y D VT + L+P E+ + + G VD + Sbjct: 505 ACAYAAEDADVTFRLHALLKPRLVPERMTTVYETLERALIPVLVGMERNGIKVDPTILRD 564 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRV 262 ++ L+ E+ + ++L LF + GL +T T V Sbjct: 565 MSADFAKRLVTLEGEIHEQAG-EPFNVGSPKQLGEILFDKMGLAGGKKGKTGAYGTGADV 623 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L + + + + ++ + LVE +N++ T + + TGR S Sbjct: 624 LETLAAEGSDFARKVLDWRQIAKLKSTYTDALVETINAETGRVHTSYSMVGAATGRLSSN 683 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 QN+P + + +R+ +A G L+ D + Sbjct: 684 DPNLQNIPIRTEEGRK-------------------------IRTAFVAEPGNVLLSVDYS 718 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A +AG + KAF G D++ T + F V +++T D R K + Sbjct: 719 QIELRLVADIAGIESLRKAFLDGIDIHAQTASEVFGVPLSEMTPDIRRKAKAINF----- 773 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 G++ A + T+ A Sbjct: 774 ---------GIIYGISGFGLARQLSTSQA------------------------------E 794 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + A+ ++ + + E+ + + + Sbjct: 795 AQAYINAYFERFPGIRDYMTEMKTFARE--------------------------HGFVET 828 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----- 617 GR + + + + + R +Q + D++ M+ Sbjct: 829 KFGRKVHIQAIRDKNPAMRNF---GERAAINAP------IQGTAADVIKRAMVRLPVALD 879 Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMT--SNPSWAKGLPLKAEGYESKRY 673 ++ ++L VHDE++ E P+ D S L +M + P +PL AE K + Sbjct: 880 KAQSKARMLLQVHDELLFEVPEDDVEATSALVREVMEGAAAPQLNLSVPLIAEAGWGKSW 939 >gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1] gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1] Length = 928 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 105/707 (14%), Positives = 205/707 (28%), Gaps = 172/707 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54 D ET + L+ ++ +F HD + Sbjct: 352 AFDLETDALDTLS----------ANIVGISFAIAPGEAAYLPVAHDYLDAPEQLDRAAVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL---PSALK 110 LK LE+ V N ++R VLK DI + T++ + + Sbjct: 402 AQLKPLLEDDSAWKVGQNLKYDRGVLKNY---DIELAGIKFDTMLESYILNSVVGKHDMD 458 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 ++ L + + ++ A Y D VT + Sbjct: 459 SLAAR------------WLNHKTVTFQEIAGKGKNQLTFNQIALEQASHYAAEDADVTLQ 506 Query: 171 IFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + ++ P E L + I G +D A+ ++ + +L+ Sbjct: 507 LHLKMWPELEKEAGPRKVFEQIEMPLLTVISRIERNGVLIDQAILAQHSKELTARLAELE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 + L + ++L+ LF + G+ T +T + VL+ P Sbjct: 567 LKAHELAG-EPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKV 625 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R S+ + L +N GR+ + + TGR S QN+P + Sbjct: 626 ILEHR-GLSKLKSTYTDKLPLMINPLSGRVHTSYHQAV-TATGRLSSADPNLQNIPVRND 683 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R +A++G ++V AD + IE R++A ++ Sbjct: 684 EGRR-------------------------IRQAFVAAKGYRIVAADYSQIELRIMAHLSQ 718 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF GED++ T + F V +V+ +QR K + Sbjct: 719 DKGLLDAFAQGEDIHRATASEVFGVPLDKVSAEQRRSAKAINF--------------GLI 764 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + + ++ + +++ Sbjct: 765 YGMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFERY 794 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V Q + I GR L D+ Sbjct: 795 PGVLRYMENTRQLA--ASKGYVETIE------------------------GRRLWLPDIK 828 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627 ++ + + R +Q + DI+ M+ +++ Sbjct: 829 SSNAIRR---KAAERAAINAP------MQGTAADIIKRAMIAVDAWLEQQNDNSVRMIMQ 879 Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E A + LM + +PL E + Sbjct: 880 VHDELVFEVKAEAVEAASQKIRALMEGSVQ--LDVPLLVEVGVGDNW 924 >gi|259417724|ref|ZP_05741643.1| DNA polymerase I [Silicibacter sp. TrichCH4B] gi|259346630|gb|EEW58444.1| DNA polymerase I [Silicibacter sp. TrichCH4B] Length = 935 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 96/716 (13%), Positives = 200/716 (27%), Gaps = 178/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET ++ ++ H Sbjct: 349 YVAVDTETTGLNEMI----------ADLVGICLCVVPGQACYVPLTHKAGNSDDLFGSDD 398 Query: 51 --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 ++LK LE+ + + N ++ + I I T++L+ + Sbjct: 399 LAEGQMPLETALEMLKPVLEDDAILKIGQNMKYDAKIFARN---GIDITPIDDTMLLSYA 455 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + + E L Q + K L+ R Sbjct: 456 LHGGMHGHGMDTLSERY-LDHQPIP-IKSLL----------GSGKSAITFDRVPIDDATP 503 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T ++++ +P ++Q L + + G VD ++ Sbjct: 504 YAAEDADITLRLWQQFKPQLHQKQVTTVYETLERPLVPVLAQMEQNGIKVDRDTLSRMSN 563 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265 + L+ E+ L + ++L LF + L +T T +L Sbjct: 564 AFSQKMAALEAEIHELAG-ESFNVGSPKQLGEILFDKLSLPGGKKGKTGAYATGADILED 622 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVF 324 +V + R S+ + L E ++ + GR+ + GA+ TGR + Sbjct: 623 LATEHELPARVLDWRQ-LSKLKSTYTDALQEHIHPETGRVHTSYLQTGAN-TGRLASSDP 680 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P S +R +A EG L+ D + I Sbjct: 681 NLQNIPVRSEEGRR-------------------------IREAFVAEEGNVLLSLDYSQI 715 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA +AG +AF G D++ T + F+V ++T + R K + Sbjct: 716 ELRILAHVAGIDALKQAFADGHDIHAMTASEVFDVPLEEMTPEIRRKAKAIN-------- 767 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 G++ A + Sbjct: 768 ------FGVIYGIS------------------------------GFGLARNLRIPRGEAQ 791 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + ++ + + ++ + + + Sbjct: 792 GFIDRYFERFPGIRQYMDDTVNFAKD--------------------------HGYVQTLF 825 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKA 620 GR + ++ + R +Q + D++ M+ Sbjct: 826 GRKIHTPEI----AAKGPRASFAKRAAINAP------IQGTAADVIRRAMVRMPDAIAHL 875 Query: 621 GYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + S+ +M A + L + + + Sbjct: 876 PARMLLQVHDELLFEVPEDHVDETISVAREIMEGAADPAVHMDVKLVVDAGRGQNW 931 >gi|329897110|ref|ZP_08271855.1| DNA polymerase I [gamma proteobacterium IMCC3088] gi|328921434|gb|EGG28823.1| DNA polymerase I [gamma proteobacterium IMCC3088] Length = 908 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 111/706 (15%), Positives = 199/706 (28%), Gaps = 167/706 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52 T D ET S Y E ++ +F + HD Sbjct: 331 TFAFDTETNSLD---------YME-AELVGLSFCAEPGVACYVPVAHDYPGAPDQLSRDY 380 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSAL 109 + LK+ LE+ V + ++ VL + + T++ + + Sbjct: 381 VLNQLKDLLEDPQYQKVGQHLKYDMHVLANY-GIALRGFA-GDTMLESYVLDSVGGRHDM 438 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 ++ E L R E + ++ + Y D +T Sbjct: 439 DSLAERY------------LGRRTISFEDVAGKGAKQLTFNQVSLEQAVPYACEDADITW 486 Query: 170 EIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++++ L E L + Q+I G V + + ++ +L Sbjct: 487 QLYEYLTNQLTATESLHTVYTDIELPLAPVLQSIERNGALVSREILQQQSSVIGARLIEL 546 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274 + E L + ++L LF E L + T +T + VL P Sbjct: 547 EAEAHDLAGRP-FNLGSTKQLGEILFDELKLPIIKKTPKGAPSTGEEVLVELALDYPLPK 605 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + R ++ + L +N T + TGR S QN+P S Sbjct: 606 VLLEYR-GLAKLKSTYTDKLPTLINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRSV 664 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA E +V AD + IE R++A ++G Sbjct: 665 EGRA-------------------------IRKAFIAPENHVIVAADYSQIELRIMAHLSG 699 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L AF G D++ T A F VA +VT DQR K + Sbjct: 700 DAGLLTAFNEGLDVHAATAAEVFGVALDEVTSDQRRSAKAINF--------------GLI 745 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ A + + + Q++ Sbjct: 746 YGMSAFGLAKQLHI------------------------------GRAESQAYIDTYFQRY 775 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + + Q + + GR L ++ Sbjct: 776 PGVLDYMDRTRQGAHE--------------------------RGYVETIFGRRLYLPEIN 809 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628 R +Q + DI+ + M+ + +++ V Sbjct: 810 ARNKMRVQA---AERTAINAP------MQGSAADIIKKAMLAVDRFLRDSSLESKMIMQV 860 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E P + + + M S A +PL E + Sbjct: 861 HDELVFEVPKHELDALRAGVITAMESAAQLA--VPLLVEVGLGDNW 904 >gi|15963928|ref|NP_384281.1| DNA polymerase I [Sinorhizobium meliloti 1021] gi|15073103|emb|CAC41562.1| Probable DNA polymerase I [Sinorhizobium meliloti 1021] Length = 1004 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 103/706 (14%), Positives = 203/706 (28%), Gaps = 173/706 (24%) Query: 21 ICKYAEDVCVILFAFGFDDH---------PVELWDCVH------------------DPVM 53 A ++ F+ D+ H Sbjct: 415 TSPDAMRADLVGFSLAVADYANDPSGSRIRAAYVPLAHKSGVSDLLGGGPVDSQVPGRET 474 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110 LKE LE+ V V N + V+K I + + T++++ + Sbjct: 475 LSRLKELLEDPSVLKVGQNLKYGYLVMKRH---GIAMRSFDDTMLMSYVLDAGNGAHGMD 531 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 ++ E G IA + + Y D + Sbjct: 532 SLAERW--------LGHTPIAY----KDVTGTGRSSLTFDFVDIDKATAYAAEDADIALR 579 Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ L+P E+ L + + +RG VD + L+ + L+ Sbjct: 580 LWHVLKPRLAAKGLTRVYERLERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALED 639 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 E+ L + ++L LF + GL T+ +T +VL + Sbjct: 640 EIYRLAG-ETFTIGSPKQLGDILFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRK 698 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + + ++ + L ++ + + T + A+ TGR S QN+P + Sbjct: 699 IVDWRQLTKLKSTYTDALPGFVHPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEG 758 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + +R+ +A+ G KLV AD + IE RVLA +A Sbjct: 759 RK-------------------------IRTAFVATPGHKLVSADYSQIELRVLAHVADIP 793 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF G D++ T + F V + + R K + + G Sbjct: 794 QLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINFGII--------------YG 839 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A+ + + K + ++ Sbjct: 840 ISAFGLANQLSIE------------------------------RSEAGDYIKRYFERFPG 869 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + + N + GR Y D+ ++ Sbjct: 870 IRDYMENTKAFARE--------------------------NGYVETIFGRRAHYPDIRSS 903 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630 + R +Q + DI+ M+ K ++L VHD Sbjct: 904 NPSMR---AFNERASINAP------IQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHD 954 Query: 631 EIVCETPDTDEF-NASMLYHLMTSNPSWAKG--LPLKAEGYESKRY 673 E++ E D + ++ +M + A +PLK + + + Sbjct: 955 ELIFEVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNW 1000 >gi|56459137|ref|YP_154418.1| DNA polymerase I [Idiomarina loihiensis L2TR] gi|56178147|gb|AAV80869.1| DNA polymerase I [Idiomarina loihiensis L2TR] Length = 921 Score = 422 bits (1085), Expect = e-115, Method: Composition-based stats. Identities = 103/708 (14%), Positives = 198/708 (27%), Gaps = 166/708 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 D ET S Y E ++ + HD Sbjct: 340 DYFAFDTETTSLN---------YME-AELVGVSLAMAPGEAVYIPVGHDYMEAPDQVGRD 389 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPSALK 110 + + LK LE V N ++ +L+ I + + T++ + + Sbjct: 390 WLLEQLKPLLEAEKPQKVGQNLKYDSHILRRY---KIRLAGILNDTMLASYVFNSVGS-- 444 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + + L + E + ++ A G Y D +T Sbjct: 445 ------RHDMDTLSL-HYLNHKTISFEDIAGKGAKQLTFNQIALEQAGPYAAEDADITYR 497 Query: 171 IFKRLEPL------------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + L + E L + + G +D L +Q + + L Sbjct: 498 LHDVLWNKVKETGSELQSVLTDIEVPLVPILCDMEQYGVRIDANLLGKQSQEIAEKLDAL 557 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274 +++ + + ++L+ F + L + T +T + VL P Sbjct: 558 EKKAFEIAG-EEFNLGSPKQLQRIFFEKLELPIVKKTPKGAPSTAEEVLHELAHDYPLPD 616 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R S+ + L + +N D T + TGR S QN+P + Sbjct: 617 VILQHR-GLSKLKSTYTDKLPKMINPDTGRVHTSYQQAVTATGRLSSTDPNLQNIPIRTA 675 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 VR I +G K+V D + IE R++A ++ Sbjct: 676 EGRR-------------------------VRQAFIPEQGYKIVAIDYSQIELRIMAHLSQ 710 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ LKAF G D++ T A F +V+ DQR K + Sbjct: 711 DESLLKAFAEGLDIHRATAAEVFGCKADEVSNDQRRQAKAVNF--------------GLI 756 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ A + + + ++ Sbjct: 757 YGMS------------------------------AFGLARQLGIARHEAQHYMDKYFERF 786 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + + ++ + GR L D+ Sbjct: 787 PGVLRYMEDTRKQAKE--------------------------QGYVKTLFGRRLPLPDIK 820 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--------AGYDIVL 626 + + R +Q + DI+ + M+ +++ Sbjct: 821 ASNGARR---KGAERAAINAP------MQGTAADIIKKAMLKVADWIDSNNCQDDVRMLM 871 Query: 627 TVHDEIVCETPDTDE-FNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E ++ L +M S +PL AE + + Sbjct: 872 QVHDELVFEIKESKLTDYIEQLTEVMEKAAS--LDVPLIAEAGKGNNW 917 >gi|153214860|ref|ZP_01949668.1| DNA polymerase I [Vibrio cholerae 1587] gi|153826297|ref|ZP_01978964.1| DNA polymerase I [Vibrio cholerae MZO-2] gi|124115103|gb|EAY33923.1| DNA polymerase I [Vibrio cholerae 1587] gi|149739965|gb|EDM54144.1| DNA polymerase I [Vibrio cholerae MZO-2] Length = 886 Score = 422 bits (1084), Expect = e-115, Method: Composition-based stats. Identities = 105/703 (14%), Positives = 203/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + HD + Sbjct: 310 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 359 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 360 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 417 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ A +Y D VT + + Sbjct: 418 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 467 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G +D L +Q + + +L+Q Sbjct: 468 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 527 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 528 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 586 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 587 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 645 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 646 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 680 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 681 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 726 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 727 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 756 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + Q + GR L ++ + + Sbjct: 757 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 790 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 791 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 841 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S A +PL A+ + Sbjct: 842 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVADAGHGDNW 882 >gi|307319227|ref|ZP_07598656.1| DNA polymerase I [Sinorhizobium meliloti AK83] gi|306895063|gb|EFN25820.1| DNA polymerase I [Sinorhizobium meliloti AK83] Length = 1004 Score = 422 bits (1084), Expect = e-115, Method: Composition-based stats. Identities = 103/706 (14%), Positives = 203/706 (28%), Gaps = 173/706 (24%) Query: 21 ICKYAEDVCVILFAFGFDDH---------PVELWDCVHDP------------------VM 53 A ++ F+ D+ H Sbjct: 415 TSPDAMRADLVGFSLAVADYANDPSGSRIRAAYVPLAHKSGVSDLLGGGPVDSQVPVREA 474 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110 LKE LE+ V V N + V+K I + + T++++ + Sbjct: 475 LSRLKELLEDPSVLKVGQNLKYGYLVMKRH---GIAMRSFDDTMLMSYVLDAGNGAHGMD 531 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 ++ E G IA + + Y D + Sbjct: 532 SLAERW--------LGHTPIAY----KDVTGTGRSSLTFDFVDIDKATAYAAEDADIALR 579 Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ L+P E+ L + + +RG VD + L+ + L+ Sbjct: 580 LWHVLKPRLAAKGLTRVYERLERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALED 639 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 E+ L + ++L LF + GL T+ +T +VL + Sbjct: 640 EIYRLAG-ETFTIGSPKQLGDILFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRK 698 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + + ++ + L ++ + + T + A+ TGR S QN+P + Sbjct: 699 IVDWRQLTKLKSTYTDALPGFVHPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEG 758 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + +R+ +A+ G KLV AD + IE RVLA +A Sbjct: 759 RK-------------------------IRTAFVATPGHKLVSADYSQIELRVLAHVADIP 793 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF G D++ T + F V + + R K + + G Sbjct: 794 QLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINFGII--------------YG 839 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A+ + + K + ++ Sbjct: 840 ISAFGLANQLSIE------------------------------RSEAGDYIKRYFERFPG 869 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + + N + GR Y D+ ++ Sbjct: 870 IRDYMENTKAFARE--------------------------NGYVETIFGRRAHYPDIRSS 903 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630 + R +Q + DI+ M+ K ++L VHD Sbjct: 904 NPSMR---AFNERASINAP------IQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHD 954 Query: 631 EIVCETPDTDEF-NASMLYHLMTSNPSWAKG--LPLKAEGYESKRY 673 E++ E D + ++ +M + A +PLK + + + Sbjct: 955 ELIFEVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNW 1000 >gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 943 Score = 422 bits (1084), Expect = e-115, Method: Composition-based stats. Identities = 103/713 (14%), Positives = 198/713 (27%), Gaps = 174/713 (24%) Query: 1 MATL------FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---- 50 M + +D ET S L ++ + H Sbjct: 361 MKKIEAAELTAVDTETTSLDALA----------AELVGISLSVKPGEACYIPVAHRNGEA 410 Query: 51 ----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNG- 104 ++ + +K LE++ V N ++ + DI + TL+ + Sbjct: 411 QLSRELVLKRMKSWLESSSHLKVGQNLKYDIHIFANY---DIHLEGIAFDTLLESYVLES 467 Query: 105 -LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 LP + ++ E G + I E + ++ Y Sbjct: 468 HLPHNMDSLAERH--------LGLKTIRY----EEVCGKGVHQIGFDQVDLQIATNYAAE 515 Query: 164 DVTVTREIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D +T + L P E + + G +D AL Q V Sbjct: 516 DADITLRLHLELWPQIQASPGLLYVYEKIEMPAMLVLGIMERNGIRIDSALLAKQGQQVG 575 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268 +L+ E+ L + + +++ LF + L + T + T + VL + Sbjct: 576 KRLLELEGEIHRLAGQP-FNIQSPKQIAEILFGQLELPIVKKTPSGAPSTDEEVLQKLAE 634 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQ 327 P ++ + R ++ + L + GR+ A TGR + Q Sbjct: 635 DYPLPARILDYR-SLAKLMSTYIEKLPRMADPKTGRIHTNFSQATA-VTGRLASSDPNLQ 692 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + +R I ++G KL+ AD + IE R Sbjct: 693 NIPVRTEEGRR-------------------------IREAFIPADGCKLLSADYSQIELR 727 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A +A ++ L AF+ G+D++ T A F + V +QR Sbjct: 728 IMAHIAEDENLLTAFKEGKDVHQATAAEIFGIPLDDVNSEQRRYA--------------K 773 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A A + Sbjct: 774 VINFGLIYGMS------------------------------AFGLAGNLGIERAAAQNYI 803 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + ++ V++ + N + GR Sbjct: 804 AKYFDRYPGVAQYMERTRLEARE--------------------------NGYVETVFGRR 837 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AG 621 L ++ + R +Q + D++ M+ Sbjct: 838 LWLPEIKGSNGPRRQ---GAERAAINAP------MQGTAADLIKLAMIAVEDWLEKEQLK 888 Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V + P + + L LM +PL + Sbjct: 889 TKMLLQVHDELVFDVPLDEIDLLQAKLPDLMCHVAQ--LKVPLVVSIGIGDNW 939 >gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2] gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2] Length = 939 Score = 422 bits (1084), Expect = e-115, Method: Composition-based stats. Identities = 103/714 (14%), Positives = 204/714 (28%), Gaps = 173/714 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP-------VELWDCVHD---- 50 ID ET S A + ++ +F + + HD Sbjct: 353 DVFAIDTETTSLN----------AMEAKIVGVSFAYAEKKDQAWQNFAAYVPLTHDYDGA 402 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LEN + V N ++ + K +++ + T++ + Sbjct: 403 PEQLPIQEVLAKLKPLLENPAIKKVGQNFKYDWHIFKNA-GIEVQGMAY-DTMLESYCFN 460 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + L + + K ++ Y Sbjct: 461 SVATRHNMDDLALTY------------LNHSTIHFKDIAGTGKKQKTFNQIELETASPYA 508 Query: 162 KGDVTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T ++ + L P E L + + G +D + + Sbjct: 509 AEDADITLQLHQTLLPKLQAEPTLYKVFEEIEMPLMPVLAKMERNGVLIDRQMLADQSYE 568 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSN 266 + + T+L+Q+ + + ++L+ LF L +T + VL Sbjct: 569 LGQKLTELEQKAHLIAGTP-FNLNSSKQLQEVLFERLELPIVKKTPKGQPSTAEPVLVQL 627 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + + + ++ ++L + +N T + TGR S Sbjct: 628 AEDGHEMPNLILEYRSLAKLKSTYTDSLPKQINQQTGRVHTSYQQAVASTGRLSSTEPNL 687 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P S +R IA G +L+ +D + IE Sbjct: 688 QNIPIRSAEGRR-------------------------IRQAFIAQPGYRLMASDYSQIEL 722 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A ++G+ LKAF G+D++ T A FN+ +VT +QR K + Sbjct: 723 RIMAHLSGDASLLKAFAEGKDIHQATAAEIFNMPLEEVTSEQRRSAKAVNF--------- 773 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ A + + Sbjct: 774 -----GLIYGMS------------------------------AFGLAKQLNISRGLAQEY 798 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + ++ V+ + +QT + GR Sbjct: 799 INLYFARYPGVANYMESTKENAKQT--------------------------GYVETLMGR 832 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------A 620 L D+ L R +Q + DI+ M+ + Sbjct: 833 RLYLPDINAKNGQLRQY---AERTAINAP------MQGTAADIIKTAMVKMQQWLDQTPC 883 Query: 621 GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++ VHDE+V E + D A + +M + +PL E + + Sbjct: 884 DIKMLMQVHDELVFEVAEADMDQARKEIKTIMEAALK--LDVPLIVEIGDGLNW 935 >gi|315125371|ref|YP_004067374.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas sp. SM9913] gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas sp. SM9913] Length = 911 Score = 422 bits (1084), Expect = e-115, Method: Composition-based stats. Identities = 107/703 (15%), Positives = 200/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F HD + Sbjct: 335 AFDTETTSLEYMK----------AQLVGMSFAVKAGEAAYLPIAHDYPGAPEQLSLEFVM 384 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113 Q L L + + V N ++++VL ++ + T++ + Sbjct: 385 QKLGPILADENKAKVGQNLKYDKSVLANA-GYELNGIK-FDTMLESYVFNSVGTRHDMDS 442 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 ALK K ++ + ++ Y D +T + + Sbjct: 443 LALKYLGHKNISFED----------IAGKGKKQLTFNQIELEKAAPYAAEDADITLRLHQ 492 Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E L + I G +D + T +Q + +L++E Sbjct: 493 VLWPKLEADEKLKSVFEDIEMPLVSVISDIERTGVAIDSNMLATHSQRLGERLLELEKEA 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + L + T +T + VL P + Sbjct: 553 FEIAG-EPFNLSSPKQLQVLLFEKLELPVIKKTPKGAPSTAEEVLQELAHDYPLPKVIIE 611 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R S+ + L +N + T + TGR S QN+P S Sbjct: 612 HR-GLSKLKSTYTDKLPLIVNERTQRVHTSYHQAVTATGRLSSSDPNLQNIPIRSEEGRR 670 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA++G K+V AD + IE R++A ++ ++ Sbjct: 671 -------------------------IREAFIAADGYKIVAADYSQIELRIMAHLSQDKGL 705 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G D++ T A F V +VT D R K + G++ Sbjct: 706 LSAFANGLDVHSATAAEVFGVELEEVTSDMRRKAKAVN--------------FGLIYGMS 751 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + ++ V Sbjct: 752 ------------------------------AFGLARQLDVPRHEAQHYIDKYFERFPGVL 781 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E + + N + GR L ++ Sbjct: 782 EYMETTREKAAE--------------------------NGYVETIFGRRLHLPEINARNG 815 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M++ +++ VHDE Sbjct: 816 ARR---KGAERAAINAP------MQGTAADIIKKAMLSVHAWVNQQAPNTVKLLMQVHDE 866 Query: 632 IVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E + E + LM+ +PL E E + Sbjct: 867 LVFEIKTECTEQYTKQICELMSQAAQ--LDVPLIVEADEGDNW 907 >gi|260576953|ref|ZP_05844934.1| DNA polymerase I [Rhodobacter sp. SW2] gi|259020795|gb|EEW24110.1| DNA polymerase I [Rhodobacter sp. SW2] Length = 935 Score = 422 bits (1084), Expect = e-115, Method: Composition-based stats. Identities = 97/714 (13%), Positives = 198/714 (27%), Gaps = 175/714 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51 + +D ET S ++ ++ + H Sbjct: 350 VVAVDTETTSLDEMR----------AELVGISLCVQAGTACYIPLGHRQGGGDLFGSSAL 399 Query: 52 --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 +LK LE+ + + N ++ +L L I + T++++ + Sbjct: 400 TEGQMPVAQALALLKPVLEDDAILKIGQNMKYDAKILAR---LGISVAPIDDTMLMSYAM 456 Query: 104 GL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + A+ + G + IA + R Y Sbjct: 457 HAGLNSHGMDALSDQY--------LGHQPIAI----KPLLGSGKSAVTFDRVPIDQAVAY 504 Query: 161 CKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T +++ +P + L + + G VD ++ Sbjct: 505 AAEDADITLRLWELFKPQLHRAHVTTVYETLERPLVPVLAQMEMAGIQVDRDTLSRMSNA 564 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266 + L+ E+ + + ++L LF + L + +T T VL Sbjct: 565 FAQKMAGLEAEIHDMAG-EKFNVGSPKQLGEILFDKMSLPGGEKGKTGAYATGADVLEDL 623 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 +V + R S+ + L + +N + T L + TGR + Sbjct: 624 ATEHELPGRVLDWRQ-LSKLKSTYTDALQDHINPETGRVHTSYSLTGAVTGRLASTDPNL 682 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P S +R +A +G++LV D + IE Sbjct: 683 QNIPVRSEEGRR-------------------------IREAFVAPKGRRLVSLDYSQIEL 717 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA +A +AF G+D++ T + FNV Q+T D R K + Sbjct: 718 RILAHVADIPALKQAFREGQDIHAMTASEMFNVPLDQMTPDIRRQAKAIN---------- 767 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ A +A + Sbjct: 768 ----FGVIYGIS------------------------------GFGLARNLRIPRSAAQGF 793 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + ++ + ++ + N + GR Sbjct: 794 IDRYFERFPGIKGYMDDTVAFAK--------------------------ANGFVQTLFGR 827 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GY 622 + ++ R +Q + D++ M+ A Sbjct: 828 KIHTPEIN----ARGPGAGFAKRAAINAP------IQGTAADVIRRAMVRMPAAIAGIDA 877 Query: 623 DIVLTVHDEIVCETPDTDEFNASML-YHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + + +M + P+ + L E + Sbjct: 878 KMLLQVHDELLFEVAEDAVDTLIPIAREVMETACDPAVHLSVRLTVEAGHGANW 931 >gi|262151175|ref|ZP_06028314.1| DNA polymerase I [Vibrio cholerae INDRE 91/1] gi|262031069|gb|EEY49694.1| DNA polymerase I [Vibrio cholerae INDRE 91/1] Length = 890 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 203/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + HD + Sbjct: 314 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 363 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 364 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 421 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ A +Y D VT + + Sbjct: 422 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 471 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G +D L +Q + + +L+Q Sbjct: 472 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 531 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 532 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 590 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 591 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 649 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 650 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 684 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 685 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 730 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 731 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 760 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + Q + GR L ++ + + Sbjct: 761 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 794 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 795 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 845 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S A +PL AE + Sbjct: 846 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 886 >gi|145632225|ref|ZP_01787960.1| DNA polymerase I [Haemophilus influenzae 3655] gi|145634721|ref|ZP_01790429.1| DNA polymerase I [Haemophilus influenzae PittAA] gi|144987132|gb|EDJ93662.1| DNA polymerase I [Haemophilus influenzae 3655] gi|145267887|gb|EDK07883.1| DNA polymerase I [Haemophilus influenzae PittAA] Length = 935 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 100/705 (14%), Positives = 213/705 (30%), Gaps = 165/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51 + +D ET S ++ ++ +F ++ + Sbjct: 359 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 408 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 +K LEN ++ + N F+ ++ +++ T++L+ + + Sbjct: 409 TALAAIKLILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 466 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G E IA E+ ++ + EY D VT Sbjct: 467 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLQQATEYAAEDADVTM 514 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L E L ++ + G +D + + T L Sbjct: 515 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTAL 574 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 +++ +L + ++L+ LF + GL +T + VL Sbjct: 575 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 632 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ S+ + L + +NS T + TGR S QN+P + Sbjct: 633 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 692 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA EG +V AD + IE R++A ++G Sbjct: 693 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 727 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF G+D++ +T A F V+ +VT +QR K + Sbjct: 728 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------GLI 773 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + + ++ + Q++ Sbjct: 774 YGMS------------------------------AFGLSRQLGISRPDAQKYMDLYFQRY 803 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + ++ + + GR L D+ Sbjct: 804 PSVQQFMTDIRAKAK--------------------------AQGYVETLFGRRLYLPDIN 837 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629 ++ + + R +Q + DI+ M+ + ++++ VH Sbjct: 838 SSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVH 888 Query: 630 DEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + F + + + +PL E + + Sbjct: 889 DELVFEVRSEKVAFFREQIKQHIEAAAELV--VPLIVEVGVGQNW 931 >gi|59710681|ref|YP_203457.1| DNA polymerase I [Vibrio fischeri ES114] gi|59478782|gb|AAW84569.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Vibrio fischeri ES114] Length = 932 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 97/705 (13%), Positives = 200/705 (28%), Gaps = 168/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + +I +F ++ HD + Sbjct: 356 AFDTETDSLDYMV----------ANLIGLSFAVEEGEAAYVPVAHDYLDAPEQLDRDWVL 405 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 + LK LE+ + V N ++ +VL ++++ + T++ + + + Sbjct: 406 EQLKPYLEDDNKAKVGQNLKYDASVLARY-DIEMKGIK-FDTMLESYVYNSVAGKHNMDS 463 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + I+ E + ++ A Y D +T + Sbjct: 464 LALRY--------LQHNTISF----EEIAGKGKKQLTFNQIALEQAAPYAAEDADITLRL 511 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L E L + + +G +D L + + +L++ Sbjct: 512 HHVLNAKLEADEKLKSVFTDIELPLVSVLSRMERKGVYIDDMLLSAQSVEIGQRLDELEK 571 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276 + + ++L+T LF + L + T + T + VL P + Sbjct: 572 AAFEVAG-EEFNMNSPKQLQTILFEKMELPVIKKTPSGAASTNEEVLQELALDYPLPKLI 630 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L + +N T + TGR S QN+P + Sbjct: 631 LEYR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 689 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R +A G K++ D + IE R++A ++ ++ Sbjct: 690 RR-------------------------IRQAFVAPHGWKILAVDYSQIELRIMAHLSQDK 724 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A V+ +VT + R K + G Sbjct: 725 ALLAAFSAGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINF--------------GLIYG 770 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + + + +++ Sbjct: 771 MSAFGLAKQI------------------------------GIPRGEAQDYMNVYFERYPG 800 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + E + + GR L ++ Sbjct: 801 VMQYMEETRLLATE--------------------------QGYVETLYGRRLHLPEINAR 834 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVH 629 + R +Q + DI+ + M+ K ++++ VH Sbjct: 835 NGMRR---KAAERAAINAP------MQGTAADIIKKAMILVDEWVETEGKDRVNLLMQVH 885 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + + + LM +PL AE + Sbjct: 886 DELVFEVKEDALDEVTTKVRELMEQAAQ--LDVPLVAEAGFGNNW 928 >gi|307306340|ref|ZP_07586084.1| DNA polymerase I [Sinorhizobium meliloti BL225C] gi|306902182|gb|EFN32779.1| DNA polymerase I [Sinorhizobium meliloti BL225C] Length = 1004 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 103/706 (14%), Positives = 204/706 (28%), Gaps = 173/706 (24%) Query: 21 ICKYAEDVCVILFAFGFDDH---------PVELWDCVHDPVM------------------ 53 A ++ F+ D+ H + Sbjct: 415 TSPDAMRADLVGFSLAVADYANDPSGSRIRAAYVPLAHKSGVSDLLGGGPVDSQVPVRET 474 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110 LKE LE+ V V N + V+K I + + T++++ + Sbjct: 475 LSRLKELLEDPSVLKVGQNLKYGYLVMKRH---GIAMRSFDDTMLMSYVLDAGNGAHGMD 531 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 ++ E G IA + + Y D + Sbjct: 532 SLAERW--------LGHTPIAY----KDVTGTGRSSLTFDFVDIDKATAYAAEDADIALR 579 Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ L+P E+ L + + +RG VD + L+ + L+ Sbjct: 580 LWHVLKPRLAAKGLTRVYERLERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALED 639 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 E+ L + ++L LF + GL T+ +T +VL + Sbjct: 640 EIYRLAG-ETFTIGSPKQLGDILFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRK 698 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + + ++ + L ++ + + T + A+ TGR S QN+P + Sbjct: 699 IVDWRQLTKLKSTYTDALPGFVHPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEG 758 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + +R+ +A+ G KLV AD + IE RVLA +A Sbjct: 759 RK-------------------------IRTAFVATPGHKLVSADYSQIELRVLAHVADIP 793 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF G D++ T + F V + + R K + + G Sbjct: 794 QLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINFGII--------------YG 839 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A+ + + K + ++ Sbjct: 840 ISAFGLANQLSIE------------------------------RSEAGDYIKRYFERFPG 869 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + + N + GR Y D+ ++ Sbjct: 870 IRDYMENTKAFARE--------------------------NGYVETIFGRRAHYPDIRSS 903 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630 + R +Q + DI+ M+ K ++L VHD Sbjct: 904 NPSMR---AFNERASINAP------IQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHD 954 Query: 631 EIVCETPDTDEF-NASMLYHLMTSNPSWAKG--LPLKAEGYESKRY 673 E++ E D + ++ +M + A +PLK + + + Sbjct: 955 ELIFEVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNW 1000 >gi|325954851|ref|YP_004238511.1| DNA polymerase I [Weeksella virosa DSM 16922] gi|323437469|gb|ADX67933.1| DNA polymerase I [Weeksella virosa DSM 16922] Length = 941 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 118/704 (16%), Positives = 214/704 (30%), Gaps = 163/704 (23%) Query: 1 MATL---FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVM 53 M TL D ET S L + ++ +F ++ D + Sbjct: 366 MKTLDSFAFDTETTSLDPL----------EAKLVGISFSWEKGKGYYLPFPEDFDDAKNI 415 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKA 111 E N + + HN ++ VL + I T++ L Sbjct: 416 ILEFAELFSNPAIEKIGHNIKYDLKVLYKY-GIRIDGEN-FDTMIAHYLLNPDMRHNLDV 473 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E K + LI + K EY D VT ++ Sbjct: 474 LSETY--LGYKPVSIETLIGK---------KGKNQKNFREVDLIEQTEYGTEDSDVTFQL 522 Query: 172 FKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 EP E L + T+ G +DV L++ + +L+Q+ Sbjct: 523 KNIFEPELEKVSLTKLFRNIEMPLMKVLATMEIEGIRLDVDFLQQLSKKHQEKIKELEQK 582 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTPQAIQV 276 + S + ++L LF + L + +T + +LS P + Sbjct: 583 IFSEAG-EEFNLNSPKQLGDILFDKLKLEPKSKKTKTGQYSTGEEILSKLAH-YPIIKNI 640 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + R + ++ L E +N + T + TGR S QN+P + Sbjct: 641 LHYRQ-LQKLKSTYIDALPELVNPVTQRVHTTFAQTVAATGRLSSVNPNLQNIPIRTEEG 699 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395 +R IA K++ AD + IE R++A MA + Sbjct: 700 -------------------------QQIRKAFIARNPEYKIISADYSQIELRLIAQMAQD 734 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +KAF+ GED++ +T A+ F VA +VT++QR+ K + Sbjct: 735 PVMVKAFQDGEDIHASTAAKIFGVALDEVTREQRSQAKTVNF--------------GIIY 780 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A T +++ A+ + + Sbjct: 781 GVSAFGLAQQ------------------------------TGLSNTEAKKLIDAYYETYP 810 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + + ++ + + N + R +D+ + Sbjct: 811 TLKKYIDQQIASARE--------------------------NGFVETLMRRRRYLKDINS 844 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHD 630 NT R +Q + DI+ M+ K ++L VHD Sbjct: 845 RN---NTVRSHAERNAVNAP------IQGSAADIVKLAMIQIQKELDKKFATKMLLQVHD 895 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V + P ++ S + M S +PL AE + Sbjct: 896 ELVFDAPISEVEEVSKMIKTTMESVIQ--MEVPLVAEVGVGDNW 937 >gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99] gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99] Length = 917 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 106/709 (14%), Positives = 209/709 (29%), Gaps = 170/709 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51 + ID ET S Y E ++ +F + HD Sbjct: 338 DLIAIDTETTSLN---------YME-AKLVGISFAIEAGKAAYLPLGHDYLDAPKQLDQA 387 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 LK LEN ++ V N ++ ++ + + T++ + Sbjct: 388 EALAKLKPLLENPELKKVGQNLKYDISIFAN-VGIKLQGIA-FDTMLESYVFNSVATKHN 445 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + + G + I+ E + ++ + Y D +T Sbjct: 446 MDDLALKY--------LGHKNISF----EEIAGKGVKQLTFNQIDLEIAAPYAAEDADIT 493 Query: 169 REIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + + L P E L + I G +D + ++ + + Sbjct: 494 LRLHQHLWPRLEKEPQLAAVFTDIELPLIQILSDIERGGVLIDGMMLGQQSEELARTIDE 553 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+Q+ + + ++L+ F + G + T +T + VL P Sbjct: 554 LEQKAFEIAG-EKFNLSSPKQLQALFFEKLGYPIIKKTPKGAPSTAEDVLVELALDYPLP 612 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + +R ++ + L +N+ GR+ + A+ TGR S QN+P Sbjct: 613 KIILQHR-SLAKLKSTYTDKLPLMVNAQSGRIHTSYHQANAA-TGRLSSSEPNLQNIPIR 670 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +R IA EGKK++ AD + IE R++A + Sbjct: 671 TEEGRR-------------------------IRQAFIAREGKKVLAADYSQIELRIMAHL 705 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F+V +VT +QR K + Sbjct: 706 SQDKGLLTAFAAGKDIHRATAAEVFDVDFDEVTTEQRRRAKAVN--------------FG 751 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ A + ++ + + Sbjct: 752 LIYGMSAFGLAKQLDI------------------------------SRPEAQKYIDTYFK 781 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ V + E + + GR L Sbjct: 782 RYPGVLKYMEETRAEA--------------------------ADLGYVSTLYGRRLYLPA 815 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIV 625 + + + R +Q + DI+ + M+N + +++ Sbjct: 816 IKDRNAMRRQA---AERAAINAP------MQGTAADIIKKAMINIAHWIATETRGEIEMI 866 Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + VHDE+V E + LM S + L AE + Sbjct: 867 MQVHDELVFEVDSDKAEEMREKVCQLMADAVS--LDVELLAEAGIGDNW 913 >gi|229515857|ref|ZP_04405315.1| DNA polymerase I [Vibrio cholerae TMA 21] gi|229347120|gb|EEO12081.1| DNA polymerase I [Vibrio cholerae TMA 21] Length = 906 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 205/703 (29%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + HD + Sbjct: 330 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVI 379 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 380 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 437 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ A + +Y D VT + + Sbjct: 438 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALQEAAQYAAEDADVTLRLHQ 487 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G +D L +Q + + +L+Q+ Sbjct: 488 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKA 547 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 548 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 606 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 607 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 665 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 666 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 700 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 701 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 746 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 747 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 776 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + Q + GR L ++ + + Sbjct: 777 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 810 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 811 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 861 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S A +PL AE + Sbjct: 862 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGGNW 902 >gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489] gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489] Length = 946 Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 104/705 (14%), Positives = 217/705 (30%), Gaps = 164/705 (23%) Query: 1 MAT--LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMP 54 M + D ET LT ++ AF ++ D + Sbjct: 370 MKQTSVCFDTETTGLNPLT----------AELVGIAFSWEASKGFYIPFPEDQDQAQELI 419 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112 + L+ E+ + + N ++ VL+ + I + T++ + + Sbjct: 420 EQLRPFFEDEKIEKIGQNLKYDIKVLRKYNLI-IK-GAYFDTMLAHYLINPDMRHNMDVL 477 Query: 113 GE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 E L + + E LI + + EY D +T ++ Sbjct: 478 AETYLNYTPISITE---LIGK---------KGKNQLSMRQVPIEKQTEYAVEDADITYQL 525 Query: 172 FKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 +P + L + + G +DV ++L++ ++ + L+ Sbjct: 526 ASHFKPELKDAKTEELFNDIEIPLLSVLADMELEGINLDVDFLNSLSEELNTDIKNLETS 585 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + ++L LF + L T+ +T + VLS + + Sbjct: 586 IYEAAG-EEFNIASPKQLGEILFGKLKLVDKPKKTKTGQYSTAEDVLSYLAQDHEIIKNI 644 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ ++ L + + T + TGR S QN+P + Sbjct: 645 LEYR-GLAKLKSTYIDALPDQVEESTGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERG 703 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395 VR + E L+ AD + IE R++A ++ E Sbjct: 704 R-------------------------QVRKAFVPRDENYTLLAADYSQIELRIIAALSDE 738 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 ++AF+ GED++ +T ++ FNV QVT++QR+ K + + Y + Sbjct: 739 TTMIEAFKNGEDIHASTASKVFNVPLDQVTREQRSNAKTVNFGIIY-----GVSAFGLSN 793 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + + + A+ + + Sbjct: 794 QTD---------------------------------------LSRGESKELIDAYYETYP 814 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ + +EL N + GR +D+ + Sbjct: 815 KLKKYMSELVDFARD--------------------------NGYVQTVLGRRRYLKDINS 848 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629 + + + + +Q + DI+ M+N K ++L VH Sbjct: 849 RNAVVRSAAERN---------AVNAPIQGSAADIIKIAMINIHKKLTGGNFKTKMLLQVH 899 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V + T+ +++ M + S A +PL E + Sbjct: 900 DELVFDAHKTELEEVRALIKTEMENAYSLA--VPLDVEIGTGDNW 942 >gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12] gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12] Length = 917 Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 106/709 (14%), Positives = 206/709 (29%), Gaps = 170/709 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51 + ID ET S + D ++ +F + HD Sbjct: 338 DLIAIDTETTSLNYM----------DAKLVGISFAIEAGKAAYLPLGHDYLDAPEQLDQA 387 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 LK LEN ++ V N ++ ++ + + T++ + Sbjct: 388 EALAKLKPLLENPELKKVGQNLKYDISIFAN-VGIKLQGIA-FDTMLESYVFNSVATKHN 445 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + + G + I+ E + ++ Y D +T Sbjct: 446 MDDLALKY--------LGHKNISF----EEIAGKGVKQLTFNQIDLETAAPYAAEDADIT 493 Query: 169 REIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + + L P E L + I G +D + + + + Sbjct: 494 LRLHQHLWPRLEKEPELASVFTDIELPLIQVLSDIERGGVLIDSMMLGQQSGELARTIDE 553 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+Q+ + + ++L+ F + G + T +T + VL P Sbjct: 554 LEQKAFEIAG-EKFNLSSPKQLQVLFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPLP 612 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + +R ++ + L +N GR+ + A+ TGR S QN+P Sbjct: 613 KIILQHR-SLAKLKSTYTDKLPLMVNAKSGRVHTSYHQANAA-TGRLSSSEPNLQNIPIR 670 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +R IA EGKK++ AD + IE R++A + Sbjct: 671 TEEGRR-------------------------IRHAFIAREGKKVLAADYSQIELRIMAHL 705 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F+V +VT +QR K + Sbjct: 706 SQDEGLLTAFAAGKDIHRATAAEVFDVDFGEVTTEQRRRAKAVN--------------FG 751 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ A + ++ + + Sbjct: 752 LIYGMSAFGLAKQLDI------------------------------PRPEAQKYIDTYFK 781 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ V + E + + GR L Sbjct: 782 RYPGVLKYMEETRAEA--------------------------ADLGYVSTLYGRRLYLPA 815 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIV 625 + + + R +Q + DI+ + M+N D++ Sbjct: 816 IKDRNAMRRQA---AERAAINAP------MQGTAADIIKKAMINIAHWIATETHGEIDMI 866 Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + VHDE+V E + + LM S + L AE + Sbjct: 867 MQVHDELVFEVDSDRAEEMQAKVCQLMADAVS--LDVELLAEAGIGDNW 913 >gi|148265918|ref|YP_001232624.1| DNA polymerase I [Geobacter uraniireducens Rf4] gi|146399418|gb|ABQ28051.1| DNA polymerase I [Geobacter uraniireducens Rf4] Length = 892 Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 109/705 (15%), Positives = 206/705 (29%), Gaps = 169/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 +D ET S L + ++ +F F +H H + Sbjct: 317 AVDLETTSLNPL----------EAEIVGISFSFREHEAYYIPVGHRYPGAPHQLSRDDVL 366 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKA 111 LK L + + + N ++ VL+ +D+ W T++ + L + Sbjct: 367 GALKPLLLDPEKHKIGQNIKYDYQVLRRA-GIDMQGI-WCDTMLASYLLNPTRTSQGLDS 424 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + +I+ K + Y D T + Sbjct: 425 LAVEF--------LDHRMISY----AEVAGKGKEQKNFAQVEVEKASVYSCEDADATYLL 472 Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 K P E L + + G +D+ L L+ + L++E Sbjct: 473 HKLFLPRLAESGMERLFFELEMPLVKILAEMELYGVKLDLPLLQRLSDGFGGQLADLERE 532 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQV 276 + +L G + ++L LF L + T+ +T L A + Sbjct: 533 IFALAGG-EFNVNSPKQLGEVLFERLQLQVGKKTKTKTGWSTNVDELERLAGEHEIARLI 591 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R S+ + L + +++ GR+ + + TGR S QN+P S Sbjct: 592 LQYR-SLSKLKSTYTDALPKLVDAASGRVHTSYNQAV-TNTGRLSSSEPNLQNIPIRSEE 649 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA+EG L+ AD + IE RVLA ++ + Sbjct: 650 GR-------------------------SIRHAFIAAEGCLLLSADYSQIELRVLAHLSAD 684 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AF ED++ T A F + P VT++ R K + Sbjct: 685 RVFCDAFARDEDIHTRTAAEVFGLFPQMVTQEMRRQAKTIN--------------FGVIY 730 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G + A E + + +H+ Sbjct: 731 G------------------------------QGAFSLARELGVSTKVAKEFIDNYFARHA 760 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + + +NG GR L D+ + Sbjct: 761 GARTFLDGC---VREAEDNGYVTTIL-----------------------GRRLPIPDIKS 794 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 + + ++ +Q + DI+ + M+ +++ VH Sbjct: 795 SNGNIRAFAQRN---------AVNYPIQGSAADIIKQAMVRVVDRMEREGMKSRLIMQVH 845 Query: 630 DEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E P+ ++ ML M + +PL+ + + + Sbjct: 846 DELVFEVPEEEKLAMEMLVKHEMEHAVT--LRVPLRVDMNFGRNW 888 >gi|283834618|ref|ZP_06354359.1| hypothetical protein CIT292_08818 [Citrobacter youngae ATCC 29220] gi|291069528|gb|EFE07637.1| DNA polymerase I [Citrobacter youngae ATCC 29220] Length = 928 Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 207/701 (29%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRDRAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 +LK LE+ + V N ++R +L ++++ T++ + +V Sbjct: 403 ALLKPLLEDENAHKVGQNLKYDRGILANY-DIELRGI-VFDTMLESYILN------SVAG 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 455 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K L + + G + A+ H ++ + + +L+Q+ Sbjct: 512 MWPELQKHKGPLNVFENIDMPLVPVLSRVERNGVKIAPAVLHKHSEELTLRLNELEQKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 631 R-GLAKLKSTYTDKLPLMINKKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRR- 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 689 ------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 724 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT +QR K + G++ Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + ++ + +++ V E Sbjct: 770 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 800 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNGA 834 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 + +Q + DI+ M+ + +++ VHDE+V Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDGWLQTEQPRVRMIMQVHDELV 885 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E D + ++ LM + +PL E + + Sbjct: 886 FEVHKDDLESVSKKIHQLMEN--ETHIDVPLLVEVGSGENW 924 >gi|148358256|ref|YP_001249463.1| DNA polymerase I [Legionella pneumophila str. Corby] gi|148280029|gb|ABQ54117.1| DNA polymerase I [Legionella pneumophila str. Corby] Length = 896 Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 101/700 (14%), Positives = 200/700 (28%), Gaps = 162/700 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVMPQV 56 ID ET + ++ + ++ H + Sbjct: 324 CIDTETTNLD----------VMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVLTA 373 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEA 115 LK LEN + + N ++ +VLK + + R+ T++ + + A Sbjct: 374 LKPILENPAIGKIGQNIKYDYSVLKNY-GITLKGIRY-DTMLESYVLNSGAGRHDMDSLA 431 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 LK K ++ + + G Y D +T + +L Sbjct: 432 LKYLGYKTISYED----------VAGKGAKQLRFDQIPVEKAGIYAAEDADITLRLHHKL 481 Query: 176 EPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P+ + + + G +D + + + L+QE L Sbjct: 482 YPMLDEPLRNVLHDIEMPLLTVLADMEIHGVLIDPVILEKHGSRLKEQMKSLEQEAVQLA 541 Query: 227 YGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L+ LF E L +T + VL + R Sbjct: 542 G-KAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELAFDYRLPAVILEYR-S 599 Query: 283 ASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ ++ L + +N R+ + A+ TGR S QN+P S Sbjct: 600 LSKLVSTYIDALPKRINPKTHRVHTSYNQAVAA-TGRLSSSDPNLQNIPIRSEEGR---- 654 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R+ IA EG ++ AD + IE R++A ++ + L+A Sbjct: 655 ---------------------LIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRA 693 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G D++ T + F V+K+QR K + G++ Sbjct: 694 FANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNF--------------GLIYGMSAFG 739 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 A + + + +++ +V E Sbjct: 740 LAKQI------------------------------GVERQDAQHYIDTYFRRYPKVLEYM 769 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + Q + GR L ++ + Sbjct: 770 ERTRKQAHQ--------------------------LGYVETLFGRRLYLPEINSRNLMR- 802 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIVC 634 + R G +Q + DI+ + M+ + +++ VHDE+V Sbjct: 803 --QKAAERTAINGP------MQGTAADIIKKTMLAVSSWEHSQKNPSAKMIMQVHDELVF 854 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E ++++ LM +PL + Sbjct: 855 EVRKEAVEECHAIIHKLMEQTVK--LSVPLVVSIGIGSNW 892 >gi|260428784|ref|ZP_05782761.1| DNA polymerase I [Citreicella sp. SE45] gi|260419407|gb|EEX12660.1| DNA polymerase I [Citreicella sp. SE45] Length = 935 Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 100/714 (14%), Positives = 196/714 (27%), Gaps = 176/714 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 + +D ET ++ ++ + H Sbjct: 350 VAVDTETTGLNEMAC----------DLVGISLCITPGKACYIPLAHRAAATDDLFGSDEL 399 Query: 51 -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 +LK LE+ V + N ++ + + I T++++ + Sbjct: 400 AEGQMPMQDALDLLKPLLEDPAVMKIGQNMKYDAKIFARY-GIGITP--IDDTMLMSYAM 456 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + E S K L+ R +Y Sbjct: 457 HGGLHGHGMDTLSERY--LSHTPIPIKSLL----------GSGKSQITFDRVPVEDAVKY 504 Query: 161 CKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T ++ +P +++ L + + G VD ++ Sbjct: 505 AAEDADITLRLWTIFKPQLHQDRVTRVYEGLERPLVPVLAEMEMAGVQVDRDTLSRMSNA 564 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266 + +L+ E+ L + ++L LF + GL +T T VL Sbjct: 565 FSQKMAQLEAEIHELAG-ESFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATGADVLEDL 623 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 +V + R S+ + L E +N + T + + TGR + Sbjct: 624 ATEHELPARVLDWRQ-LSKLKSTYTDALQEHINKETGRVHTSYVIAGANTGRLASTDPNL 682 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P S +R +A EGK +V D + IE Sbjct: 683 QNIPVRSEEGRR-------------------------IREAFVAPEGKTIVSLDYSQIEL 717 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA MAG +AF G+D++ T + FNV ++T + R K + Sbjct: 718 RILAHMAGIDALKEAFREGQDIHAMTASEMFNVPMEEMTPEIRRQAKAIN---------- 767 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ A + Sbjct: 768 ----FGVIYGIS------------------------------GFGLARNLRIPRGEAQAF 793 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + ++ + +E ++ + GR Sbjct: 794 IDRYFERFPGIKTYMDETVAFAKEHK--------------------------RVETLFGR 827 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY 622 + ++ S R +Q + DI+ M+ + Sbjct: 828 IIHTPEI----SASGPRAGFAKRAAINAP------IQGTAADIIRRAMVRMPGAIAEIPA 877 Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E E + + +M P +PL + K + Sbjct: 878 KMLLQVHDELIFEVEQGAEDDLIAAARSVMEGAAEPVVKLDVPLVVDAGRGKSW 931 >gi|296105609|ref|YP_003617309.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy] gi|295647510|gb|ADG23357.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy] Length = 896 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 102/700 (14%), Positives = 200/700 (28%), Gaps = 162/700 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVMPQV 56 ID ET + ++ + ++ H + Sbjct: 324 CIDTETTNLD----------VMQAELVGISLAVEEDNASYIPLAHTDGSTQLVKEEVLTA 373 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEA 115 LK LEN + + N ++ +VLK + + R+ T++ + + A Sbjct: 374 LKPILENPAIGKIGQNIKYDYSVLKNY-GITLQGIRY-DTMLESYVLNSGAGRHDMDSLA 431 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 LK K ++ + + G Y D +T + +L Sbjct: 432 LKYLGYKTISYED----------VAGKGAKQLRFDQIPVEKAGIYAAEDADITLRLHHKL 481 Query: 176 EPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P+ K + + G +D + + + L+QE L Sbjct: 482 YPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAVQLA 541 Query: 227 YGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L+ LF E L +T + VL + R Sbjct: 542 G-KAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELAFDYRLPAVILEYR-S 599 Query: 283 ASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ ++ L + +N R+ + A+ TGR S QN+P S Sbjct: 600 LSKLVSTYIDALPKRINPKTHRVHTSYNQAVAA-TGRLSSSDPNLQNIPIRSEEGR---- 654 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R+ IA EG ++ AD + IE R++A ++ + L+A Sbjct: 655 ---------------------LIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRA 693 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G D++ T + F V+K+QR K + G++ Sbjct: 694 FANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNF--------------GLIYGMSAFG 739 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 A + + + +++ +V E Sbjct: 740 LAKQI------------------------------GVERQDAQHYIDTYFRRYPKVLEYM 769 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + Q + GR L ++ + Sbjct: 770 ERTRKQAHQ--------------------------LGYVETLFGRRLYLPEINSRNLMR- 802 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIVC 634 + R G +Q + DI+ + M+ + +++ VHDE+V Sbjct: 803 --QKAAERTAINGP------MQGTAADIIKKTMLAVSSWEHSQKNPSAKMIMQVHDELVF 854 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E ++++ LM +PL + Sbjct: 855 EVRKEAVEECHAIIHKLMEQTVK--LSVPLVVSIGTGSNW 892 >gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas haloplanktis TAC125] gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas haloplanktis TAC125] Length = 911 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 199/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F HD + Sbjct: 335 AFDTETTSLDYM----------QAQLVGMSFAVKAGEAAYLPVAHDYPGAPEQLSLEFVM 384 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113 Q L L + V N ++++VL + + T++ + Sbjct: 385 QKLGPILADAKKAKVGQNLKYDKSVLANA-GYQLNGIK-FDTMLESYVLNSVGTRHDMDS 442 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 ALK K ++ + ++ G Y D +T + + Sbjct: 443 LALKFLGHKNISFED----------IAGKGKKQLTFNQVELDKAGPYAAEDADITLRLHQ 492 Query: 174 RLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E L + I G +D + +Q + +L++E Sbjct: 493 VLWPKLAADEKLKSVFEDIEMPLVNVISDIERTGVAIDSKMLAAHSQRLGERLLELEKEA 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + L + T +T + VL P + Sbjct: 553 YEIAG-EPFNLSSPKQLQVLLFEKLELPIIKKTPKGAPSTAEEVLQELAHDYPLPKVIIE 611 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R S+ + L +N + T + TGR S QN+P S Sbjct: 612 HR-GLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIPIRSEEGRR 670 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA++G K+V AD + IE R++A ++ ++ Sbjct: 671 -------------------------IREAFIAADGYKIVAADYSQIELRIMAHLSQDKGL 705 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G D++ T A F V+ +VT D R K + G++ Sbjct: 706 LSAFANGLDVHSATAAEVFGVSLEEVTSDMRRKAKAVNF--------------GLIYGMS 751 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + ++ V Sbjct: 752 ------------------------------AFGLARQLDVPRHEAQHYIDKYFERFPGVL 781 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E + + + + GR L ++ Sbjct: 782 EYMETTREKAAE--------------------------SGYVETIFGRRLYLPEIKAQNG 815 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTVHDE 631 + R +Q + DI+ + M++ Y +++ VHDE Sbjct: 816 ARR---KGAERAAINAP------MQGTAADIIKKAMLSVHSWVYEQAPNTVKLLMQVHDE 866 Query: 632 IVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E + LM+ + +PL E E + Sbjct: 867 LVFEIKTDCVDAYTKHICELMSQAAT--LDVPLIVEADEGDNW 907 >gi|99082604|ref|YP_614758.1| DNA polymerase I [Ruegeria sp. TM1040] gi|99038884|gb|ABF65496.1| DNA polymerase I [Ruegeria sp. TM1040] Length = 935 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 95/716 (13%), Positives = 201/716 (28%), Gaps = 178/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET ++ ++ + H Sbjct: 349 YVAVDTETTGLNEMI----------ADLVGISLCVVPGQACYVPLTHKTGNSDDLFGSDD 398 Query: 51 --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 ++LK LE+ + + N ++ + I + T++L+ + Sbjct: 399 LAEGQMPLKDALEMLKPVLEDDAILKIGQNMKYDAKIFARN---GIDVTPIDDTMLLSYA 455 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + + E + K L+ R + Sbjct: 456 LHGGMHGHGMDTLSERY--LDHQPIPIKSLL----------GSGKSAITFDRVSIEDATP 503 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T ++++ +P ++Q L + + G VD ++ Sbjct: 504 YAAEDADITLRLWQQFKPQLHQKQVTTVYETLERPLVPVLAQMEQHGIKVDRDTLSRMSN 563 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265 + L+ E+ L + ++L LF + L +T T +L Sbjct: 564 AFSQKMAALEAEIHELAG-ETFNVGSPKQLGEILFDKMSLPGGKKGKTGAYATGADILED 622 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVF 324 +V + R S+ + L E ++ + GR+ + GA+ TGR + Sbjct: 623 LATEHTLPARVLDWRQ-LSKLKSTYTDALQEHIHPETGRVHTSYLQTGAN-TGRLASSDP 680 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P S +R +A EG L+ D + I Sbjct: 681 NLQNIPVRSEEGRR-------------------------IREAFVADEGNVLLSLDYSQI 715 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA +AG +AF G D++ T + F+V ++T D R K + Sbjct: 716 ELRILAHVAGIDALKQAFADGHDIHAMTASEVFDVPLEEMTPDIRRKAKAIN-------- 767 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 G++ A + Sbjct: 768 ------FGVIYGIS------------------------------GFGLARNLRIPRGEAQ 791 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + ++ + + ++ ++ + + Sbjct: 792 GFIDRYFERFPGIRQYMDDTVNFAKE--------------------------HGYVQTLF 825 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKA 620 GR + ++ + R +Q + D++ M+ Sbjct: 826 GRKIHTPEI----AAKGPRASFAKRAAINAP------IQGTAADVIRRAMVRMPEAIAHL 875 Query: 621 GYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673 ++L VHDE++ E P+ E S+ +M A + L + + + Sbjct: 876 PARMLLQVHDELLFEVPEDHVEETISVAREIMEGAADPAVHMDVKLVVDAGRGQNW 931 >gi|54296094|ref|YP_122463.1| DNA polymerase I [Legionella pneumophila str. Paris] gi|53749879|emb|CAH11261.1| DNA polymerase I [Legionella pneumophila str. Paris] Length = 896 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 102/700 (14%), Positives = 201/700 (28%), Gaps = 162/700 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVMPQV 56 ID ET + ++ + ++ H + Sbjct: 324 CIDTETTNLD----------VMQAELVGISLAVEEDNASYIPLAHTDGSTQLVKEEVLTA 373 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEA 115 LK LEN + + N ++ +VLK + + R+ T++ + + A Sbjct: 374 LKPILENPAIGKIGQNIKYDYSVLKNY-GITLKGIRY-DTMLESYVLNSGAGRHDMDSLA 431 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 LK K ++ + + G Y D +T + +L Sbjct: 432 LKYLGYKTISYED----------VAGKGAKQLRFDQIPVEKAGIYAAEDADITLRLHHKL 481 Query: 176 EPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P+ K + + G +D + + + L+QE L Sbjct: 482 YPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAVQLA 541 Query: 227 YGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L+ LF E L +T + VL + R Sbjct: 542 G-KAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELAFDYRLPAVILEYR-S 599 Query: 283 ASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ ++ L + +N R+ + A+ TGR S QN+P S Sbjct: 600 LSKLVSTYIDALPKRINPKTHRVHTSYNQAVAA-TGRLSSSDPNLQNIPIRSEEGR---- 654 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R+ IA EG ++ AD + IE R++A ++ + L+A Sbjct: 655 ---------------------LIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRA 693 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G D++ T + F V+K+QR K + G++ Sbjct: 694 FANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNF--------------GLIYGMSAFG 739 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 A + + + +++ +V E Sbjct: 740 LAKQI------------------------------GVERQDAQHYIDTYFRRYPKVLEYM 769 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + Q + GR L ++ + Sbjct: 770 ERTRKQAHQ--------------------------LGYVETLFGRRLYLPEINSRNLMR- 802 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-------YDIVLTVHDEIVC 634 + R G +Q + DI+ + M+ + +++ VHDE+V Sbjct: 803 --QKAAERTAINGP------MQGTAADIIKKTMLAISSWEHSQKSPSAKMIMQVHDELVF 854 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E +++++LM +PL + Sbjct: 855 EVRKEAVEECHAIIHNLMEQTVK--LSVPLVVSIGTGSNW 892 >gi|260771611|ref|ZP_05880531.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14] gi|260613388|gb|EEX38587.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14] Length = 887 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 102/705 (14%), Positives = 199/705 (28%), Gaps = 168/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + HD + Sbjct: 311 AFDTETDSLDYMV----------ANLVGLSFAVAEGEAAYVPVGHDYLDAPQQLDRDWVL 360 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111 LK LEN + V N ++ +V+ + + T++ + + + Sbjct: 361 AQLKPLLENPQLAKVGQNLKYDASVVARY-GITMRGIA-HDTMLASYVYNSVGGKQDMDS 418 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L E ++ Y D VT + Sbjct: 419 LALRF------------LQHSCISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDADVTLRL 466 Query: 172 FKRLEPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 RL+ L + L+ + + G +D L +Q + +L++ Sbjct: 467 HHRLQALLEADAPLFGVYRDIEVPLVPVLSRMERTGVLIDDQLLAIQSQEIAQRLVELER 526 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+T LF + L T +T + VL P + Sbjct: 527 KAYELADQ-EFNLSSPKQLQTILFEQMKLPVVKKTPSGTPSTNEEVLQELALDYPLPAVI 585 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L + +N T + TGR S QN+P ++ Sbjct: 586 LEYR-GLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNQEG 644 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA G K++ D + IE R++A ++G+ Sbjct: 645 RR-------------------------IRQAFIAPSGWKIMAVDYSQIELRIMAHLSGDP 679 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF+ G+D++ T A V+ QVT +QR K + G Sbjct: 680 ALLDAFQQGKDIHTATAAEIIGVSIDQVTSEQRRRAKAVNF--------------GLIYG 725 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + + + + +++ Sbjct: 726 MS------------------------------AFGLAKQLGIPRSEAQHYMDKYFERYPG 755 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E + + GR L ++ + Sbjct: 756 VLRYMEETRSMAAE--------------------------QGYVETLFGRRLHLPEIQSR 789 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVH 629 + R +Q + DI+ + M+ +++ VH Sbjct: 790 NGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDNWIETEGQGRVKLLMQVH 840 Query: 630 DEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E ++ + LM S +PL A+ + Sbjct: 841 DELVFEVQESALSEIESKVQELMESAAQ--LNVPLVADAGHGNNW 883 >gi|312115891|ref|YP_004013487.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100] gi|311221020|gb|ADP72388.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100] Length = 1009 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 104/723 (14%), Positives = 202/723 (27%), Gaps = 182/723 (25%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 + D ET + A + A + H Sbjct: 412 VAFDTETTALD----------AMSAKLCGVALALEPGRACYIPLAHRAGDGLDFTGAGEI 461 Query: 51 -----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 LK LE+ V + N ++ +++ DI + + T+++A + Sbjct: 462 AQLPMESALPRLKALLEDDSVLKIGQNIKYDALIMRRHG--DIRVAPYDDTMLMAYACDQ 519 Query: 106 PSA------LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + + + G IA A E Sbjct: 520 GRGGLAGFGMDELSKRH--------LGHTPIAF----TDVAGKGKAQSTFDCIAVDKATE 567 Query: 160 YCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D VT ++ + E+ + + + G VD + L+ Sbjct: 568 YAAEDADVTLRLWHLFRARIAAEGMAAVYATLERPMPAVLGQMEFNGIEVDRTVLSRLSG 627 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSS 265 +L+ E+ L + +++ LF + GL T +T +VL Sbjct: 628 DFAQSLARLEDEIYELAGQR-FNIGSPQQIADLLFGKFGLPGAKKTSTGKWSTGAKVLED 686 Query: 266 NKKLTPQ------AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 + ++ ++L + +++D T L ++ TGR Sbjct: 687 LVSSEDLTEDQRRLPAKLLEWRQLAKLKSTYTDSLPQHIDADTGRIHTCYSLASTSTGRL 746 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+P +R +RS IA+ GKKL+ A Sbjct: 747 SSTEPNLQNIPIRTREGR-------------------------MIRSAFIAAPGKKLISA 781 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA MA AF G D++ T + F V + + R K + Sbjct: 782 DYSQIELRVLAHMADIPALKHAFAEGLDIHAMTASEMFGVPVKDMPGEVRRRAKAINF-- 839 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 G++ + Sbjct: 840 ------------GIIYGISAFGLSQQ------------------------------LGIP 857 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + ++ + + + + + Sbjct: 858 RQEAGDYIAKYFERFPGIRAYMDAMRSKVHE--------------------------DGH 891 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-- 617 + GR + + ++ + + R +Q + DI+ M+ Sbjct: 892 VETLFGRKIHFPEIKTPKWNMRQF---FERAAINAP------IQGTAADIIRRAMVRVPA 942 Query: 618 --TKAG--YDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSN--PSWAKGLPLKAEGYES 670 +AG ++L VHDE+V E D++ + +M P+ A +PLK + + Sbjct: 943 ALEQAGVRARMLLQVHDELVFEADDSEVEATIKAVTRVMERAAEPAVAFSVPLKVDARAA 1002 Query: 671 KRY 673 + + Sbjct: 1003 QNW 1005 >gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans D11S-1] Length = 933 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 98/705 (13%), Positives = 205/705 (29%), Gaps = 165/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----------HDP 51 + +D ET ++ ++ +F ++ Sbjct: 357 KLIAVDTETDGLDYMS----------ANLVGVSFALENGEAAYLPLHLDYLGAPKTLEKN 406 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 LK LEN ++ + N F+ T+ +D+ T++L+ + + Sbjct: 407 TALSALKPILENPNIGKIGQNLKFDMTIFARN-GIDLQGIE-FDTMLLSYTLDSTGRHNM 464 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G + I+ E ++ GEY D VT Sbjct: 465 DDLAKRY--------LGHQTISF----EDIAGKGKNQLTFNQIPLEQAGEYAAEDADVTM 512 Query: 170 EIFKRLEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L + L L Q + G +D + + T L Sbjct: 513 KLQQVLWQKLQPQPGLVELYQSIELPLLGVLSRMERYGVLIDSDALFLQSNEITERLTAL 572 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 + + +L + ++L+ LF + GL +T + VL Sbjct: 573 EMQAHTLAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGVPSTNEEVLEELAYSHELPK 631 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R S+ + L + +N T + TGR S QN+P + Sbjct: 632 VLVEHR-GLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 690 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 + +R IA +G K++ AD + IE R++A ++ Sbjct: 691 AGRR-------------------------IRQAFIARDGYKIIAADYSQIELRIMAHLSN 725 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF G+D++ +T A F + QVT +QR K + Sbjct: 726 DQGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINF--------------GLI 771 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + +R + Q++ Sbjct: 772 YGMSSFGLSRQ------------------------------LGISRADAQRYMDLYFQRY 801 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V +++ + + + GR L ++ Sbjct: 802 PNVQTFIHDIREKAK--------------------------AQGYVETLFGRRLYLPEIN 835 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-----KAGYDIVLTVH 629 ++ + + R +Q + D + M+ +++ VH Sbjct: 836 SSNAMRR---KGAERVAINAP------MQGTAADTIKRAMIKLDGITRDDPDIHMIMQVH 886 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E ++ M + +PL + + + Sbjct: 887 DELVFEVRSEKIAFFSDLIKQHMEAAAELV--VPLIVDVGVGENW 929 >gi|330997297|ref|ZP_08321150.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841] gi|329571092|gb|EGG52799.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841] Length = 923 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 95/700 (13%), Positives = 204/700 (29%), Gaps = 159/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 L +D ET ++ ++ +F ++ DP + Sbjct: 351 DFLSLDTETTGTDPIS----------AKLVGLSFSVKENQAFYVPIPQDPEEAQKIVNEF 400 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K E+ + + N ++ VL+ + + T++ + + E Sbjct: 401 KSVYEDERILKIGQNIKYDLMVLQNY-GITLK-GEIFDTMIAHYLLQPELRHGMDYLAEV 458 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + +ELI K EY D +T ++ Sbjct: 459 Y--LNYQTIHIEELIG---------PKGKNQKNMADLPPSQVYEYACEDADITLKLKNVF 507 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 EP E L + + G C+D + + E L++E+ +L Sbjct: 508 EPKLKEEGCYDLFREVEMPLMPVLAWMERNGVCIDTEALKETSTLYTKEMNCLEEEIHAL 567 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL + + P ++ +R Sbjct: 568 AG-EPFNIASPKQVGEVLFEKLKISEKPKKTKTGQYVTSEEVLETLRTRHPIVEKILEHR 626 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N + T + TGR S QN+P + +E Sbjct: 627 -GLKKLLGTYIDALPKLINPETGHIHTSFNQTITTTGRLSSSNPNLQNIPVRNEEGKE-- 683 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I G + AD + IE R++A ++G+ ++ Sbjct: 684 -----------------------IRKAFIPEPGCEFFSADYSQIELRIMAHLSGDPHMIE 720 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ T A+ + +VT+++R+ K G+ + Sbjct: 721 AFREGHDIHAATAAKVYKKPLEEVTREERSKAKTANF--------------GIIYGITVF 766 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A + + + + +V E Sbjct: 767 GLAER------------------------------MNVSRAEAKELIDGYFTTYPKVKEY 796 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + + R RD+ ++ + + Sbjct: 797 MQKSIETARE--------------------------KGYTETIYHRKCYLRDINSHNAVV 830 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 R +Q + DI+ M+ + ++L VHDE+ Sbjct: 831 RGY---AERNAINAP------IQGSAADIIKIAMIAIYRRFQKEHIRSKMILQVHDELNF 881 Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + M + +PL+A+ K + Sbjct: 882 SVYPEEKERVQQIVIEEMERA--YTMQVPLEADYGWGKNW 919 >gi|262369822|ref|ZP_06063149.1| DNA polymerase I [Acinetobacter johnsonii SH046] gi|262314861|gb|EEY95901.1| DNA polymerase I [Acinetobacter johnsonii SH046] Length = 921 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 115/702 (16%), Positives = 203/702 (28%), Gaps = 161/702 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 D ET S ++ F+ FD HD Sbjct: 347 KRFAFDTETTSLD----------YRVAQIVGFSVAFDAQDAYYVPLAHDYENAPAQLDRE 396 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111 + +K LE+ V + H+ ++ VL+ +++ + T++ + A Sbjct: 397 QILAQIKPILEDESVQKIGHHLKYDAHVLENH-GIELK-GWYFDTMLASYVLN------A 448 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 V + L F E + K ++ Y D VT + Sbjct: 449 VATRHGMDDVSRLYLSHLTTTF---EQVAGKGAKQKTFNQIEIETAAHYAAEDAHVTYRL 505 Query: 172 FKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQ 220 F+ L+ K EL + + G +D+ L L+ Sbjct: 506 FEVLDAKLQKHPELVNILHNVEMPVARVLTIMEENGIELDLGFLDQLGIEFANTMANLES 565 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 ++ L + +++ LF + GL T +T + VL P + Sbjct: 566 QITELAGQS-FNVSSPKQVGEILFDKLGLKGGKKTATGQYSTSESVLEKI--DHPITELI 622 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + R S+ + L++ NSD T + TGR S QN+P Sbjct: 623 LDYR-GLSKLKSTYTDGLLKQANSDTHRVHTSYHQALTATGRLSSTDPNLQNIPVREEIG 681 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA +G+ L+ AD + IE R++A + ++ Sbjct: 682 R-------------------------QIRKAFIAPQGRVLLAADYSQIELRLMAHFSQDE 716 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF+ G+D++ T A VA VT DQR K + G Sbjct: 717 ALVDAFKHGQDVHRRTAAEVLGVALEDVTSDQRRQAKAVN--------------FGLLYG 762 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ F + Q++ Sbjct: 763 MSEFGLTRQ------------------------------LGFSREESRGYIAKYFQRYPG 792 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + Q + + GR L D+ + Sbjct: 793 VLDYMERTRQIARE--------------------------QGFVETILGRRLYTPDIMAS 826 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHDEI 632 + R Q + DI+ M+ K ++L VHDE+ Sbjct: 827 NKMIKQA---AERAAINAPL------QGSAADIIKMAMIAVDQMLPKDQTKMLLQVHDEL 877 Query: 633 VCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E ++ + AS L +M S +PL E + + + Sbjct: 878 VFEVDESIADELASKLADVMQSVLQ--ISVPLLVEVGKGRNW 917 >gi|52840354|ref|YP_094153.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627465|gb|AAU26206.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 896 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 100/700 (14%), Positives = 199/700 (28%), Gaps = 162/700 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVMPQV 56 ID ET + ++ + ++ H + Sbjct: 324 CIDTETTNLD----------VMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVLTA 373 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEA 115 LK LEN + + N ++ +VLK + + + T++ + + A Sbjct: 374 LKPILENPAIGKIGQNIKYDYSVLKNY-GITLKGIGY-DTMLESYVLNSGAGRHDMDSLA 431 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 LK K ++ + + G Y D +T + +L Sbjct: 432 LKYLGYKTISYED----------VAGKGAKQLRFDQIPVVKAGIYAAEDADITLRLHHKL 481 Query: 176 EPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P+ + + + G +D + + + L+QE L Sbjct: 482 YPMLDESLRNVLHDIEIPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAVQLA 541 Query: 227 YGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L+ LF E L +T + VL + R Sbjct: 542 G-KAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELAFDYRLPAVILEYR-S 599 Query: 283 ASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ ++ L + +N R+ + A+ TGR S QN+P S Sbjct: 600 LSKLVSTYIDALPKRINPKTHRVHTSYNQAVAA-TGRLSSSDPNLQNIPIRSEEGR---- 654 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R+ IA EG ++ AD + IE R++A ++ + L+A Sbjct: 655 ---------------------LIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRA 693 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G D++ T + F V+K+QR K + G++ Sbjct: 694 FANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNF--------------GLIYGMSAFG 739 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 A + + + +++ +V E Sbjct: 740 LAKQI------------------------------GVERQDAQHYIDTYFRRYPKVLEYM 769 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + Q + GR L ++ + Sbjct: 770 ERTRKQAHQ--------------------------LGYVETLFGRRLYLPEINSRNLMR- 802 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIVC 634 + R G +Q + DI+ + M+ + +++ VHDE+V Sbjct: 803 --QKAAERTAINGP------MQGTAADIIKKTMLAISSWEHSQKNPSAKMIMQVHDELVF 854 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E ++++ LM +PL + Sbjct: 855 EVRKEAVEECRAIIHKLMEQTVK--LSVPLVVSIGTGSNW 892 >gi|289207231|ref|YP_003459297.1| DNA polymerase I [Thioalkalivibrio sp. K90mix] gi|288942862|gb|ADC70561.1| DNA polymerase I [Thioalkalivibrio sp. K90mix] Length = 911 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 111/708 (15%), Positives = 206/708 (29%), Gaps = 169/708 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP-- 54 + D ET S + ++ +F F+ H DP +P Sbjct: 333 DRVAFDTETTSLDAMR----------AEIVGMSFAFEPGTAWYLPLAHTGPDADPQLPRA 382 Query: 55 ---QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--- 108 + LK LE+ + H+ ++R VL + + TL+ + + Sbjct: 383 ETLERLKPWLESERHGKLGHHLKYDRNVLGNH-GITLRGI-VDDTLLESFCLDAGANRHD 440 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 L ++ E L + E + P + +Y D + Sbjct: 441 LDSLAERH------------LDYKTTHYEDVAGKGVKQIPFAEVDIGIATDYAGEDADIC 488 Query: 169 REIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 ++ +P E L + I G VD +Q + E + Sbjct: 489 LQLDAVFQPRLQAAEGPAFVYREIEMPLVPVLADIERVGVKVDPDRLGEQSQELLAEMER 548 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQA 273 +++E G + ++++ LF GL +T + VL Sbjct: 549 IEREAFEEAGG-EFNLGSPKQIQEILFERLGLPVLRRTPKGQPSTAEDVLEQMADDYALP 607 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + +R S+ TL ++ + GR+ + GA+ TGR S QN+P Sbjct: 608 RLILEHR-GLSKLRSTYTETLPRRIHPETGRVHTSYHQAGAA-TGRLSSSEPNLQNIPVR 665 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + + +R IA EG +L+ AD + IE R++A + Sbjct: 666 TEAGRR-------------------------IRRAFIAEEGHQLLAADYSQIELRIMAHL 700 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + LKAF G+D++ T A F + P QV+ DQR K + Sbjct: 701 SQDAGLLKAFAEGQDIHRATAAEVFGLDPEQVSGDQRRAAKAIN--------------FG 746 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ A + Sbjct: 747 LIYGMS------------------------------AWGLARNLGIEQGEAREYIDRYFS 776 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ V + + + N + GR L + Sbjct: 777 RYPGVHDYMERARASGRE--------------------------NGYVETLFGRRLYLPE 810 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVL 626 + + Q R +Q + DI+ M+ +++ Sbjct: 811 INSRNGARRQ---QSERVAINAP------MQGTAADIIKRAMVRVAHDLEDTGIDARMIM 861 Query: 627 TVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E D + + L M+ + L + + Sbjct: 862 QVHDELVFEVADAAVEDLTTLVRKAMSGAAD--LDVELVVDVGVGANW 907 >gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Dna Length = 605 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 100/699 (14%), Positives = 203/699 (29%), Gaps = 167/699 (23%) Query: 10 TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKE 59 T S +++ ++ +F + HD ++LK Sbjct: 35 TDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKP 84 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEAL 116 LE+ V N ++R +L +++ T++ + + ++ E Sbjct: 85 LLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDSLAER- 141 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 L + E ++ A G Y D VT ++ ++ Sbjct: 142 -----------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMW 190 Query: 177 PLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P K L + I G +D + H ++ + + +L+++ + Sbjct: 191 PDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEI 250 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L+T LF + G+ T +T + VL P + R Sbjct: 251 AG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYR- 308 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ + L +N T + TGR S QN+P + Sbjct: 309 GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR--- 365 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R IA E +V AD + IE R++A ++ ++ L A Sbjct: 366 ----------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTA 403 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G+D++ T A F + VT +QR K + G++ Sbjct: 404 FAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYGMS--- 446 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 A + ++ + +++ V E Sbjct: 447 ---------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLEYM 479 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 ++ + GR L D+ ++ Sbjct: 480 ERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSSNGARR 513 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635 + +Q + DI+ M+ +++ VHDE+V E Sbjct: 514 AAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFE 564 Query: 636 TPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 D + ++ LM + +PL E + + Sbjct: 565 VHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601 >gi|126172309|ref|YP_001048458.1| DNA polymerase I [Shewanella baltica OS155] gi|125995514|gb|ABN59589.1| DNA polymerase I [Shewanella baltica OS155] Length = 921 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 105/704 (14%), Positives = 204/704 (28%), Gaps = 166/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54 +D ET S + ++ +F + HD V Sbjct: 345 AVDTETTSLDYMV----------AELVGISFAVEAGKAAYLPLTHDYVGAPTQINKTVAL 394 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113 + L+ LE+ + V N ++ ++L + + T++ + ++ G Sbjct: 395 EKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVA-FDTMLESYVFNSVASRHDMDG 452 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 ALK K +E + ++ Y D +T + + Sbjct: 453 LALKYLGHKNISFEE----------IAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQ 502 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P KE L + I +G +D L + + + L+++ Sbjct: 503 HLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKA 562 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ F + G + T +T + VL P + Sbjct: 563 YDIAG-EKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILE 621 Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R S+ + L +N GR+ + A+ TGR S QN+P + Sbjct: 622 HR-SLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEGR 679 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R IA +G+K++ AD + IE R++A ++ + Sbjct: 680 R-------------------------IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 LKAF G+D++ T A F +VT +QR K + G+ Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVN--------------FGLIYGM 760 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A + + + ++ V Sbjct: 761 SAFGLARQLDI------------------------------PRHEAQTYIDTYFARYPGV 790 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 E + + GR L ++ + Sbjct: 791 LRYMEETRAGA--------------------------ADLGYVSTLFGRRLYLPEIRDRN 824 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHD 630 + R +Q + DI+ + M+N + +++ VHD Sbjct: 825 AMRRQ---GAERAAINAP------MQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHD 875 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E + LM + L AE + Sbjct: 876 ELVFEVDADKAEALKKTICTLMAQAAD--LDVELLAEAGIGNNW 917 >gi|332304401|ref|YP_004432252.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171730|gb|AEE20984.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5] Length = 928 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 100/702 (14%), Positives = 205/702 (29%), Gaps = 162/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F ++ HD + Sbjct: 352 AFDTETTSLNYM----------QAELVGMSFCIEEGEAAYLPLAHDYADAPEQLDRDSVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + K LE+ + V + +++ VL ++++ + T++ + L +V Sbjct: 402 ALFKPLLEDKNKAKVGQHLKYDKNVLANY-DINLQGIAY-DTMLESYV------LDSVAT 453 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S L E + ++ Y D +T + Sbjct: 454 RHDMDSL---AQHYLGLSTVHFEDIAGKGAKQLTFNQIPLEQAAHYAAEDADITLRLHNH 510 Query: 175 LEPLSSKEQELWYLD-----------QTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + ++ EL + + G +D +Q + +L+ E+ Sbjct: 511 IWKKLNQSPELASVLSEIEVPLATVLAKMEQFGVLIDSQKLGQQSQDLASRILQLENEVH 570 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 L + ++L+ LF + L + T +T + VL P ++ Sbjct: 571 ILAG-EEFNLGSTKQLQEILFKKLDLPVLKKTPKGAPSTSEEVLQELALTYPLP-KLLME 628 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 S+ + L + +N T + TGR S QN+P + Sbjct: 629 FRVLSKLKNTYTDKLPKMINQRSGRVHTSYHQAITATGRLSSTEPNLQNIPIRTEQGRR- 687 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 VR I G K+V AD + IE R++A ++ ++ L Sbjct: 688 ------------------------VRQAFIPRPGYKIVAADYSQIELRIMAHLSQDKGLL 723 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 KAF G+D++ T A FNV+ +VT +QR K + G++ Sbjct: 724 KAFSQGKDIHTATAAEVFNVSLEEVTTEQRRNAKAINF--------------GLIYGMSA 769 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + +++ V + Sbjct: 770 FGLSKQ------------------------------LNVSRQDAQHYMDLYFERYPGVLK 799 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + ++ + GR L D+ + Sbjct: 800 YMEDARVVAKE--------------------------KGYVSTVFGRRLYLPDINASNGL 833 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEI 632 + R +Q + DI+ + M+ +++ VHDE+ Sbjct: 834 RR---KGAERAAINAP------MQGTAADIIKKAMLKVDAWIDTLPNDQTRMIMQVHDEL 884 Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + E + + + + LM S +PL E + + Sbjct: 885 IFEIKEQNVESDKNTIVDLMEKAVS--LDVPLIVEAGVGENW 924 >gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510] gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510] Length = 971 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 95/701 (13%), Positives = 208/701 (29%), Gaps = 160/701 (22%) Query: 2 ATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQV 56 + +D ET +T ++ +F + ++ D + Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRAEAQKIVNE 447 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE 114 + A E V V N ++ VL ++ T+V + + E Sbjct: 448 FRPAFEKEGVLKVGQNIKYDMLVLGNY-GTEVR-GPLFDTMVAHYVLQPELRHNMDYLAE 505 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + +ELI K + +Y D VT ++ Sbjct: 506 IYLH--YQTIHIEELIG---------PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNI 554 Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 LE E L + + G VD ++ ++++E+ Sbjct: 555 LEQELKTNDAEKLFYEIEMPLVPVLTYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQ 614 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L + +++ LF + + T+T T + VL S + ++ + Sbjct: 615 LAGTD-FNIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEH 673 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + ++ L +N + T + TGR S QN+P + +E Sbjct: 674 R-GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKE- 731 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I +G + AD + IE R++A ++G+ + Sbjct: 732 ------------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMI 767 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ G+D++ T A+ + ++ +VT++QR+ K + G+++ Sbjct: 768 EAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGII--------------YGISV 813 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + + + ++ E Sbjct: 814 FGLAERMNVD------------------------------RKEAKELIDGYFETYPQIKE 843 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR D+ + S Sbjct: 844 YMDKSIDLAR--------------------------GQGYIETIFGRKRYLPDINSRNSV 877 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + R +Q + DI+ M+ + ++L VHDE+ Sbjct: 878 VRGY---AERNAINAP------IQGSAADIIKVAMVRIYQRFQSESIKSKMILQVHDELN 928 Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + M + + +PL+A+ + Sbjct: 929 FSVLPEEKEKVQKIVIEEMENA--YRMQVPLRADCGCGSNW 967 >gi|126732262|ref|ZP_01748063.1| DNA polymerase I [Sagittula stellata E-37] gi|126707344|gb|EBA06409.1| DNA polymerase I [Sagittula stellata E-37] Length = 934 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 104/717 (14%), Positives = 199/717 (27%), Gaps = 179/717 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 T+ +D ET ++ ++ + H Sbjct: 347 TVAVDTETTGLNEMLC----------DLVGISLAVAPGEACYIPLAHLAEDGGEGLFASD 396 Query: 51 ---------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101 LK LE+ V + N ++ + I I T++++ Sbjct: 397 AKAEGQIPMQQALDALKPLLEDASVMKIGQNMKYDAKIFSRY---GIEIAPIDDTMLMSY 453 Query: 102 SNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 + + + E + K+L+ R Sbjct: 454 ALHGGEHQHGMDTLSERY--LAHTPIPIKDLL----------GTGKSQITFDRVPLDKAT 501 Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLN 208 Y D +T + +P + L + + + RG VD A ++ Sbjct: 502 GYAAEDADITLRLALTFKPQLHRAHVTRVYETLERPLVPVLKAMEMRGIKVDRATLSRMS 561 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLS 264 + +L++E+ +L + +L LF + L + +T VL Sbjct: 562 GKFAQKMAELEEEIHALAG-EKFNVGSPAQLGDILFEKMSLPGGKRGKNGKYSTPADVLE 620 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCV 323 +V + R S+ + L E +N D GR+ + GA+ TGR + Sbjct: 621 DLATEHDLPGRVLDWRQ-LSKLKSTYTDALQEHINPDTGRVHTSYSIAGAN-TGRLASND 678 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+P S +R +A EG LV D + Sbjct: 679 PNLQNIPVRSEEGRR-------------------------IREAFVAPEGHTLVSLDYSQ 713 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+LA MA +AF G D++ T + FNV ++T D R K + Sbjct: 714 IELRILAHMADIDALKQAFRDGLDIHAMTASEMFNVPLDEMTPDIRRQAKAIN------- 766 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G++ A Sbjct: 767 -------FGVIYGIS------------------------------GFGLARNLRIPRAEA 789 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + ++ + + ++ + + + Sbjct: 790 QGFIDRYFERFPGIKQYMDDTVKFANEHK--------------------------RVETM 823 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATK 619 GR + ++G R +Q + DI+ M+ K Sbjct: 824 FGRVIHTPEIGAK----GPRAGFAKRAAINAP------IQGTAADIIRRAMVRMPDAIAK 873 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E D + + +M + P +PL + + + Sbjct: 874 LPAKMLLQVHDELIFEVEDGAAGDLIDVAREVMQNACDPVVKLDVPLVVDAGQGANW 930 >gi|217975428|ref|YP_002360179.1| DNA polymerase I [Shewanella baltica OS223] gi|217500563|gb|ACK48756.1| DNA polymerase I [Shewanella baltica OS223] Length = 921 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 105/704 (14%), Positives = 204/704 (28%), Gaps = 166/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54 +D ET S + ++ +F + HD V Sbjct: 345 AVDTETTSLDYMV----------AELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVAL 394 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113 + L+ LE+ + V N ++ ++L + + T++ + ++ G Sbjct: 395 EKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVA-FDTMLESYVFNSVASRHDMDG 452 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 ALK K +E + ++ Y D +T + + Sbjct: 453 LALKYLGHKNISFEE----------IAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQ 502 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P KE L + I +G +D L + + + L+++ Sbjct: 503 HLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKA 562 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ F + G + T +T + VL P + Sbjct: 563 YDIAG-EKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILE 621 Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R S+ + L +N GR+ + A+ TGR S QN+P + Sbjct: 622 HR-SLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEGR 679 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R IA +G+K++ AD + IE R++A ++ + Sbjct: 680 R-------------------------IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 LKAF G+D++ T A F +VT +QR K + G+ Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVN--------------FGLIYGM 760 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A + + + ++ V Sbjct: 761 SAFGLARQLDI------------------------------PRHEAQTYIDTYFARYPGV 790 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 E + + GR L ++ + Sbjct: 791 LRYMEETRAGA--------------------------ADLGYVSTLFGRRLYLPEIRDRN 824 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHD 630 + R +Q + DI+ + M+N + +++ VHD Sbjct: 825 AMRRQ---GAERAAINAP------MQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHD 875 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E + LM + L AE + Sbjct: 876 ELVFEVDADKAEALKKTICTLMAQAAD--LDVELLAEAGIGNNW 917 >gi|209693839|ref|YP_002261767.1| DNA polymerase I [Aliivibrio salmonicida LFI1238] gi|208007790|emb|CAQ77912.1| DNA polymerase I [Aliivibrio salmonicida LFI1238] Length = 934 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 96/705 (13%), Positives = 200/705 (28%), Gaps = 168/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + +I +F ++ HD + Sbjct: 358 AFDTETDSLDYMV----------ANLIGLSFSVEEGEAAYVPVAHDYLDAPEQLDRDWVL 407 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ V N ++ +VL ++++ + T++ + + + Sbjct: 408 AQLKPYLEDETKAKVGQNLKYDASVLARY-DIEMKGIK-FDTMLESYVYNSVAGKHNMDS 465 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + I+ E + ++ A Y D +T + Sbjct: 466 LALRY--------LQHNTISF----EEIAGKGKKQLTFNQIALEEAAPYAAEDADITLRL 513 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L E L + + +G +D L + + +L+ Sbjct: 514 HNVLHAKLVTDEKLNAVFTDIELPLISVLSRMERKGVYIDDMLLSAQSLEIGQRLDELET 573 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276 + + ++L+T LF + L + T + T + VL + Sbjct: 574 ASFEVAGQ-EFNMNSPKQLQTILFEKMELPVIKKTPSGAASTNEEVLQELALEYELPKLI 632 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L + +N T + TGR S QN+P ++ Sbjct: 633 LEYR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNKEG 691 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R +A G K++ D + IE R++A ++ ++ Sbjct: 692 RR-------------------------IRQAFVAPHGWKILAVDYSQIELRIMAHLSQDR 726 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF G+D++ T A V+ +VT + R K + G Sbjct: 727 ALLEAFSAGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINF--------------GLIYG 772 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + + + +++ Sbjct: 773 MSAFGLAKQI------------------------------GISRGEAQDYMNVYFERYPG 802 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + E + + GR L ++ Sbjct: 803 VMQYMEETRLLATE--------------------------QGYVETLYGRRLYLPEINAR 836 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVH 629 + + R +Q + DI+ + M+ ++++ VH Sbjct: 837 NAIRR---KAAERAAINAP------MQGTAADIIKKAMILVDNWIEAEGTGRVNLLMQVH 887 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + + + LM + S +PL AE + Sbjct: 888 DELVFEVKEDELEAITKQVTALMEAAVS--LDVPLIAESGFGDNW 930 >gi|262281030|ref|ZP_06058813.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202] gi|262257930|gb|EEY76665.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202] Length = 923 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 109/705 (15%), Positives = 196/705 (27%), Gaps = 167/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 ID ET S ++ F+ FD H Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAQDAYYVPLAHTYENAPQQLNRE 398 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + +K LEN V + H+ ++ + +++ + T++ + Sbjct: 399 QILAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDTMLASYVLNAAATRHG 456 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V L E + K ++ + Y D VT Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVATHYAAEDAHVT 504 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217 +++ L EL + I G +D A L+ Sbjct: 505 YRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLSVEFAKTMEG 564 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+ + + + +++ LF + G+ T +T + VL P A Sbjct: 565 LENQAMEI-ADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLA 621 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + +R ++ + LVE ++D T + TGR S QN+P Sbjct: 622 EIILEHR-GLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + I +R IA EG+ L+ AD + IE R++A + Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + + AF+ G+D++ T A +A VT DQR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ F + K + Q+ Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTRQESQNYIKQYFQR 791 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + E Q + GR L D+ Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629 + + R Q + DI+ M+ K ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + ++M S +PL E + + Sbjct: 877 DELVFEVDQNIADELSKQIANVMESVLE--ISVPLVVEVGQGLNW 919 >gi|269975277|gb|ACZ55501.1| DNA polymerase I [Staphylococcus phage SA1] Length = 645 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 187/682 (27%), Positives = 296/682 (43%), Gaps = 80/682 (11%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 A+ + V+ D +P L+EALE+ DV A N+ FER + + + P W Sbjct: 3 AWSINGGAVQHVDLHRGKKLPGELREALEDPDVEKWAFNAQFERVMTRRVLGIKTPYKAW 62 Query: 94 ICTLVLARSNGLPSALKAVGEALKLSSQKME--EGKELIARFCKGETHECLY---DRNKP 148 CT+ LA G L AVG + L K++ EGK LI F K + RN+ Sbjct: 63 RCTMALAYMLGFAGDLLAVGTQIGLPEDKLKDPEGKRLIDLFSKPQRVTKKNPFEWRNEA 122 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 E W F +Y DV I R P+ E +++ LDQ IND G +D A++ Sbjct: 123 TDPEDWWHFCKYNIRDVETELAIKARLMRYPVLDAEWDMYALDQFINDTGVMIDREFAYS 182 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266 + + + ++ +E+ +T +++ +L WL G DL T +V+ Sbjct: 183 ALALAEARKPQIIEEMADITG--LNNPNSPAQLTPWLKER-GYPFSDLRSDTVNKVIREA 239 Query: 267 KKLT--PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + P+AI+V R+ ++++++ K T+++A DGR R +LQF GASRT RW+G Sbjct: 240 DENGVDPEAIRVLQMRLNSAKNSLSKYQTMIDAAGEDGRFRFSLQFAGASRTNRWAGRRI 299 Query: 325 PPQNLPRPSRSHEELDQII--------THLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 QNLPR + E++ + L +P+ + C+RS I + G K Sbjct: 300 QTQNLPRTPKLIEDVTDLSIVNKMIHQRDLDALTLYVGEPMDALVGCIRSAFIPTPGHKF 359 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 +VADL+ IE+ V+ W+ +W + DLY + A ++ + R+ K Sbjct: 360 IVADLSSIESVVIGWLTDCKWFMNTLAAKHDLYRSFAAHWLHLPYEETKPH-RSKAKPAT 418 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 L GY+ G + TGL + M + Sbjct: 419 LGAGYRLGGGHMDENGKKTGL---------------------WGYAENMGVH-------- 449 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 E +A+R + W +L A + I +A++ + ++ K Sbjct: 450 -MTQKEAEESVQAFRDLCPEIVRAWYDLENAVFKVIRTRQAVVWG------CLIIEYTKP 502 Query: 557 NLILMLPSGRSLVY---------------RDVGNNRSYLN--------TTTRQLTREYTY 593 L + LPSGR + Y G + N + + + Y++ Sbjct: 503 FLTIRLPSGRKMYYFRPRLVERQMTVQKGPKKGEKYTKTNFQYEGKVEGSGTKWGKIYSH 562 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTS 653 GGKL ENIVQA++RD+LAEG+ A + G+ IV+ +HDEIV E P+ L M + Sbjct: 563 GGKLVENIVQALARDVLAEGLKKAHRMGFRIVMHIHDEIVTEVPEDSPLTVDDLISCMAA 622 Query: 654 NPSWAKGLPLKAEGYESKRYRK 675 WA+GLPL A G+E YRK Sbjct: 623 ELPWAEGLPLGAAGWEGYFYRK 644 >gi|304393880|ref|ZP_07375805.1| DNA polymerase I [Ahrensia sp. R2A130] gi|303294079|gb|EFL88454.1| DNA polymerase I [Ahrensia sp. R2A130] Length = 978 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 102/719 (14%), Positives = 205/719 (28%), Gaps = 178/719 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51 + +D ET S + ++ + H Sbjct: 386 HVAVDTETTSLDAMAC----------DLVGVSLATGPGRACYIPLAHLKDGSSDDGDMFS 435 Query: 52 -----------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 +LK LE V +A N ++ VL I + + T++L+ Sbjct: 436 EGLDPDQMDLKEALALLKPMLEAPSVLKIAQNLKYDWLVLSRY---GIEVGPFDDTMLLS 492 Query: 101 RSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 + A+ A L + + + Sbjct: 493 YVLDAGRGKHGMDALSLAH------------LDHTPIPFKEVAGSGKSMVTFDKVSIEKA 540 Query: 158 GEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTL 207 Y D VT ++ L+ E+ L + + RG +D + L Sbjct: 541 SAYAAEDADVTLRLWTLLKARLVAEKMVTVYERLERPLVPVLCRMEARGVEIDRQILSRL 600 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVL 263 + + + ++ ++ + + + ++L LF + L T+T T + L Sbjct: 601 SGELAQKAAGIEADIHEMAGEPI-NIASPKQLGELLFGKMELPGGKKTKTGQWATGAQAL 659 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + + + + ++ + L +N T + ++ TGR+S Sbjct: 660 EDLAAEGHELPRRIVDWRQLTKLKSTYTDALPTFINKTTGRVHTSYAMASTTTGRFSSSE 719 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+P + + + +R+ IA++G KLV AD + Sbjct: 720 PNLQNIPVRTEAGRK-------------------------IRTAFIAADGHKLVSADYSQ 754 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA MA +AF G D++ T + FNV + R K + Sbjct: 755 IELRVLAHMADISQLKQAFADGIDIHAMTASEMFNVPVEGMDPSIRRQAKAIN------- 807 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G++ A Sbjct: 808 -------FGIIYGIS------------------------------AFGLANNLGIDRGEA 830 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 K + ++ + + +E + + + + Sbjct: 831 SDYIKMYFERFPGIRDYMDETKKFARE--------------------------HGYVETI 864 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----- 618 GR Y ++ ++ + R +Q + DI+ M Sbjct: 865 FGRRAHYPEIKSSNPQMR---AFNERAAINAP------IQGSAADIIRRAMARMEGALAA 915 Query: 619 -KAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673 K ++L VHDE++ E PD + + +M P A +PL+ + ++ + Sbjct: 916 EKLSAQMLLQVHDELIFEVPDDEVDATIETVVKVMEDAPMPALSLSVPLQVDARAAENW 974 >gi|304411973|ref|ZP_07393583.1| DNA polymerase I [Shewanella baltica OS183] gi|307305868|ref|ZP_07585614.1| DNA polymerase I [Shewanella baltica BA175] gi|304349523|gb|EFM13931.1| DNA polymerase I [Shewanella baltica OS183] gi|306911361|gb|EFN41787.1| DNA polymerase I [Shewanella baltica BA175] Length = 921 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 105/704 (14%), Positives = 204/704 (28%), Gaps = 166/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54 +D ET S + ++ +F + HD V Sbjct: 345 AVDTETTSLDYMV----------AELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVAL 394 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113 + L+ LE+ + V N ++ ++L + + T++ + ++ G Sbjct: 395 EKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVA-FDTMLESYVFNSVASRHDMDG 452 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 ALK K +E + ++ Y D +T + + Sbjct: 453 LALKYLGHKNISFEE----------IAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQ 502 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P KE L + I +G +D L + + + L+++ Sbjct: 503 HLWPRLEKEAELAAMFIEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKA 562 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ F + G + T +T + VL P + Sbjct: 563 YDIAG-EKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILE 621 Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R S+ + L +N GR+ + A+ TGR S QN+P + Sbjct: 622 HR-SLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEGR 679 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R IA +G+K++ AD + IE R++A ++ + Sbjct: 680 R-------------------------IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 LKAF G+D++ T A F +VT +QR K + G+ Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVN--------------FGLIYGM 760 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A + + + ++ V Sbjct: 761 SAFGLARQLDI------------------------------PRHEAQTYIDTYFARYPGV 790 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 E + + GR L ++ + Sbjct: 791 LRYMEETRAGA--------------------------ADLGYVSTLFGRRLYLPEIRDRN 824 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHD 630 + R +Q + DI+ + M+N + +++ VHD Sbjct: 825 AMRRQ---GAERAAINAP------MQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHD 875 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E + LM + L AE + Sbjct: 876 ELVFEVDADKAEALKKTICTLMAQAAD--LDVELLAEAGIGNNW 917 >gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I [Acinetobacter calcoaceticus] Length = 923 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 110/705 (15%), Positives = 196/705 (27%), Gaps = 167/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 ID ET S ++ F+ FD H Sbjct: 349 DHFAIDIETTSLD----------YRIAEMVGFSIAFDAQDAYYVPLAHNYENAPQQLNRE 398 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + +K LEN V + H+ ++ + +++ + T++ + Sbjct: 399 QILAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDTMLASYVLNAAATRHG 456 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V L E + K ++ + Y D VT Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217 +++ L EL + I G +D A L+ R Sbjct: 505 YRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLSVEFAKTREG 564 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+ + + + +++ LF + G+ T +T + VL P A Sbjct: 565 LENQAMEI-ADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLA 621 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + +R ++ + LVE ++D T + TGR S QN+P Sbjct: 622 EIILEHR-GLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + I +R IA EG+ L+ AD + IE R++A + Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + + AF+ G+D++ T A +A VT DQR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ F + K + Q+ Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTRQESQNYIKQYFQR 791 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + E Q + GR L D+ Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629 + + R Q + DI+ M+ K ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKVLPKDQAKLLLQVH 876 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + +M S +PL E + + Sbjct: 877 DELVFEADQNIAEELSKQIAKVMESVVE--ISVPLVVEVGQGLNW 919 >gi|304413771|ref|ZP_07395215.1| DNA polymerase I [Candidatus Regiella insecticola LSR1] gi|304283862|gb|EFL92256.1| DNA polymerase I [Candidatus Regiella insecticola LSR1] Length = 937 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 204/705 (28%), Gaps = 166/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54 D ET + + +I +F HD + Sbjct: 345 AFDTETDGLDII----------NANLIGLSFAITPGEAAYLPLAHDYSDAPIQLDRTLVL 394 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKA 111 LK LEN V N F++++L C + + T++ + + + Sbjct: 395 DKLKPLLENPQKQKVGQNLKFDKSILARC-GIVLQGIA-FDTMLESYILNTVAGRHDMDS 452 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + L + E ++ A Y D +T + Sbjct: 453 LSQRY------------LQHKTITFEEIAGKGKSQLTFNQIALEQAAPYAAEDADITLRL 500 Query: 172 FKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQ 220 L P + + L ++ I G +D A+ +Q + T+L++ Sbjct: 501 HHCLWPQLQQSKALSWIFTHIEMPLLSVLSRIESTGVLIDRAVLAQHSQELTTRLTELEE 560 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+T L+ + L + T +T + VL+ P A + Sbjct: 561 QAH-LLAEEPFNLASPKQLQTILYEKQQLPVLKKTPKGAPSTDEEVLAELALDYPLAKVL 619 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P S Sbjct: 620 LEYR-GLAKLKTTYTDKLPSMINPTSGRVHTSYHQAVTVTGRLSSREPNLQNIPIRSEEG 678 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA G +++ AD + IE R++A ++ + Sbjct: 679 RR-------------------------IRQAFIAPPGYQIIAADYSQIELRIMAHLSQDS 713 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +KAF +D++ T A FNV+ T +QR K + G Sbjct: 714 GLIKAFTADKDIHRATAAEVFNVSVETATDEQRRSAKAINF--------------GLIYG 759 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + + + ++ Sbjct: 760 MS------------------------------AFGLARQLGIARVEAQHYIDLYFARYPG 789 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V+ + +Q G SGR L D+ + Sbjct: 790 VANYMEAIR---KQAATQGYVTTL-----------------------SGRRLYLPDINAS 823 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDE 631 + + RE +Q + DI+ M+ + +++ VHDE Sbjct: 824 SAMRR---KAAEREAINAP------MQGTAADIIKSAMIEIDAWLQHQPLVRMIMQVHDE 874 Query: 632 IVCETPDTDEF-NASMLYHLMTSNPS--WAKGLPLKAEGYESKRY 673 +V E ++ + HLM +PL + Sbjct: 875 LVFEVHESVVQGAVEKIRHLMEQTTEKSMPLTVPLCVNIGVGANW 919 >gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ] gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ] Length = 888 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 107/704 (15%), Positives = 202/704 (28%), Gaps = 168/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET ++ + H H + Sbjct: 314 AFDTETTGLDP----------RTAELVGISISLQAHEAFYIPVGHRYLGMPDQLPRETVL 363 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 + L+ A N + V N F+ +L L++ W T++ + L A Sbjct: 364 ERLRPAFGNPAIRKVGQNLKFDLQILA-VAGLEVQ-GSWCDTMLCSYLLNPSRGGHGLDA 421 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + ++I+ Y D T + Sbjct: 422 LAQEH--------LNHKMISYD----EVTGSGKNRICFSEVEVEKATRYAAEDADATWLL 469 Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++L P+ E L + + G +D+A L +L++ Sbjct: 470 HEKLLPMLKEQGLEKLLFELEMPLMEIMTRMEQHGVLLDLAYLAELGNGFGQRMQELEKR 529 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQV 276 + L G + ++L+ LF GL T+ +T VL+ + A + Sbjct: 530 IIELAGGP-FNLNSPKQLEEVLFERLGLQAGKKTKGKTGRSTDNEVLTGLAEEHEIAKLL 588 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + R ++ + L + + GR+ + + TGR S QN+P + Sbjct: 589 LDYR-GLTKLKSTYTDALAKLTDRQGRVHTSYNQAV-TATGRLSSSDPNLQNIPIRTDEG 646 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA G ++ AD + IE RVLA ++ + Sbjct: 647 RR-------------------------IREAFIAPPGCVILAADYSQIELRVLAHLSQDP 681 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 AF ED++ T + F + P VT + R K + G Sbjct: 682 VFCDAFSQDEDIHTRTASEVFGLFPEMVTSEMRRQAKTIN--------------FGIIYG 727 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + A + E+ A++++HS Sbjct: 728 ------------------------------QGAFSLAKQLGVARNVAEKFIAAYKERHSG 757 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + ++T + GR L D+ ++ Sbjct: 758 AIAFLDSCIASAKET--------------------------GYVTTILGRKLPIADITSS 791 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 R +Q + DI+ + M+ +A +++ VHD Sbjct: 792 N---GNLRSFAERNAI------NYPIQGSAADIIKQAMLGVDRAIRAEGLQSRLIMQVHD 842 Query: 631 EIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E +T+ L M+ A +PLK + K + Sbjct: 843 ELVFEVLETELEQMRELVNREMSQAV--ALKVPLKVDIQWGKNW 884 >gi|188581651|ref|YP_001925096.1| DNA polymerase I [Methylobacterium populi BJ001] gi|179345149|gb|ACB80561.1| DNA polymerase I [Methylobacterium populi BJ001] Length = 1047 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 111/726 (15%), Positives = 201/726 (27%), Gaps = 185/726 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET + A ++ + H Sbjct: 448 VIAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGD 497 Query: 51 -----------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 ++LK LE+ V N ++ +VL I + + Sbjct: 498 GGAGADESDKQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDFSVLHRY---GIDVAPF 554 Query: 94 ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T++++ + + G + I Sbjct: 555 DDTMLISYVLDAGKGGHGMDELARRH--------LGHQPITF----ADVAGTGRNKVTFD 602 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVD 200 R A Y D VT +++ ++P E L + + G +D Sbjct: 603 RVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAID 662 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--- 257 + L+ +L++E++ +++ LF + GL T + Sbjct: 663 RNMLSRLSGDFSQILARLEEEIQEDAG-EKFQVSSPKQIGDVLFGKMGLPGAKKTPSGQW 721 Query: 258 -TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 T +L + + N + S+ ++L E + T L A+ T Sbjct: 722 ATPATLLEELAQAGHDLPKKILNWRQLSKLKSTYTDSLQEHADRGTNRVHTSFALAATTT 781 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + +R +A EGKKL Sbjct: 782 GRLSSSDPNLQNIPIRTEEGRR-------------------------IRRAFVAPEGKKL 816 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R+LA +A +AFE G D++ T + F V Q+T D R K + Sbjct: 817 ISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATASAMFGVPLDQMTGDLRRRAKTIN 876 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ A Sbjct: 877 F--------------GIIYGIS------------------------------AFGLADRL 892 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 K + ++ + + + E G Sbjct: 893 GIGREEASAFIKQYFERFPGIRDY---IDTTKRSCREKGYVTTL---------------- 933 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 GR Y + +N + R+ +Q + DI+ M Sbjct: 934 -------FGRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTR 977 Query: 617 AT------KAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWA--KGLPLKAEG 667 K ++L VHDE+V E PD + ++ H+M P+ A +PL E Sbjct: 978 MEDALGAEKLAARMLLQVHDELVFEVPDDEVEATIPVIAHVMEEAPAPALSLSVPLVVEA 1037 Query: 668 YESKRY 673 + + Sbjct: 1038 RAAGNW 1043 >gi|332533751|ref|ZP_08409609.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505] gi|332036806|gb|EGI73268.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505] Length = 911 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 197/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F HD + Sbjct: 335 AFDTETTSLDYMK----------AQLVGMSFAVKAGEAVYLPLAHDYPGAPEQLSLEFVM 384 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113 Q L L + + V N ++++VL + + T++ + Sbjct: 385 QKLGPILADENKAKVGQNLKYDKSVLANA-GFALNGIK-FDTMLESYVFNSVGTRHDMDS 442 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 ALK K ++ + ++ Y D +T + + Sbjct: 443 LALKYLGHKNISFED----------IAGKGKKQLTFNQIELEKAAPYAAEDADITLRLHE 492 Query: 174 RLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E L + I G +D + + + +L++E Sbjct: 493 VLWPKIAADEKLKSVFEDIEMPLVSVISDIERTGVAIDSNMLAAHSMRLGERLIELEKEA 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + GL + T +T + VL P + Sbjct: 553 FEIAG-EPFNLSSPKQLQVLLFEKLGLPIIKKTPKGAPSTAEEVLQELAHDYPLPKVIIE 611 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R S+ + L +N + T + TGR S QN+P S Sbjct: 612 HR-GLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAITATGRLSSTDPNLQNIPIRSEEGRR 670 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA++G K+V AD + IE R++A ++ ++ Sbjct: 671 -------------------------IREAFIAADGYKIVAADYSQIELRIMAHLSQDKGL 705 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G D++ T A F V VT D R K + G++ Sbjct: 706 LNAFANGLDVHSATAAEVFGVELDDVTTDMRRKAKAVN--------------FGLIYGMS 751 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + ++ V Sbjct: 752 ------------------------------AFGLARQLDVPRHEAQHYIDKYFERFPGVL 781 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E + + N + GR L ++ Sbjct: 782 EYMETTREKAAE--------------------------NGYVETIFGRRLHLPEINARNG 815 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M++ + +++ VHDE Sbjct: 816 ARR---KGAERAAINAP------MQGTAADIIKKAMLSVNRWVHEQAPNTIKLLMQVHDE 866 Query: 632 IVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E + LM+ A +PL E E + Sbjct: 867 LVFEIKTDCAPEYTKHICELMSQAA--ALDVPLIVEADEGDNW 907 >gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185] gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185] Length = 935 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 105/704 (14%), Positives = 204/704 (28%), Gaps = 166/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54 +D ET S + ++ +F + HD V Sbjct: 359 AVDTETTSLDYMV----------AELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVAL 408 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113 + L+ LE+ + V N ++ ++L + + T++ + ++ G Sbjct: 409 EKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVA-FDTMLESYVFNSVASRHDMDG 466 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 ALK K +E + ++ Y D +T + + Sbjct: 467 LALKYLGHKNISFEE----------IAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQ 516 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P KE L + I +G +D L + + + L+++ Sbjct: 517 HLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKA 576 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ F + G + T +T + VL P + Sbjct: 577 YDIAG-EKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILE 635 Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R S+ + L +N GR+ + A+ TGR S QN+P + Sbjct: 636 HR-SLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEGR 693 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R IA +G+K++ AD + IE R++A ++ + Sbjct: 694 R-------------------------IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 728 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 LKAF G+D++ T A F +VT +QR K + G+ Sbjct: 729 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVN--------------FGLIYGM 774 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A + + + ++ V Sbjct: 775 SAFGLARQLDI------------------------------PRHEAQTYIDTYFARYPGV 804 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 E + + GR L ++ + Sbjct: 805 LRYMEETRAGA--------------------------ADLGYVSTLFGRRLYLPEIRDRN 838 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHD 630 + R +Q + DI+ + M+N + +++ VHD Sbjct: 839 AMRRQ---GAERAAINAP------MQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHD 889 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E + LM + L AE + Sbjct: 890 ELVFEVDADKAEALKKTICTLMAQAAD--LDVELLAEAGIGNNW 931 >gi|262273193|ref|ZP_06051009.1| DNA polymerase I [Grimontia hollisae CIP 101886] gi|262222771|gb|EEY74080.1| DNA polymerase I [Grimontia hollisae CIP 101886] Length = 931 Score = 419 bits (1076), Expect = e-114, Method: Composition-based stats. Identities = 96/708 (13%), Positives = 197/708 (27%), Gaps = 168/708 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 + D ET S Y E ++ +F + HD Sbjct: 352 DVVAFDTETDSLD---------YME-ANLVGISFAVAEGEAAYLPLAHDYLDAPKQLDRD 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + +K LE+ V N ++ +VL ++ + + T++ + Sbjct: 402 WVLAEMKLWLEDAGALKVGQNLKYDASVLARY-DIAMRGIAY-DTMLESYVFNSVAGKHD 459 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + ++ L + E + ++ Y D VT Sbjct: 460 MDSLALRY------------LQHQCISFEEIAGKGKKQLTFNQIELDQAAPYAAEDADVT 507 Query: 169 REIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + L E L + + G + + +Q + V Sbjct: 508 LRLHNALMAQLNNDEKLKVIFEQYEMPLVPVLSRMERHGVLISAEMLAKQSQEIAVRLDT 567 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQA 273 L++E+ L + ++L+ LF + GL T +T + VL P Sbjct: 568 LEKEVFELAG-EEFNLSSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPLP 626 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ R ++ + L + + T + TGR S QN+P + Sbjct: 627 KRILEYR-GLAKLKSTYTDKLPKMVKPATGRVHTSYHQAVTATGRLSSTDPNLQNIPIRN 685 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R IA GK ++ D + IE R++A ++ Sbjct: 686 EEGRR-------------------------IRQAFIAPAGKTILAVDYSQIELRIMAHLS 720 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF G+D++ T A + + VT + R K + Sbjct: 721 GDEALIDAFRHGKDIHAATAAEVMGIDISDVTPEMRRRAKAINF--------------GL 766 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ A + ++ + ++ Sbjct: 767 IYGMS------------------------------AFGLAKQLGIPRGEAQQYMDRYFER 796 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + + + GR L ++ Sbjct: 797 YPGVRQYMENTRLQAAE--------------------------QGYVETIFGRRLHLPEI 830 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVL 626 ++ + + R +Q + DI+ M+ + +++ Sbjct: 831 KSSNAMRR---KGAERAAINAP------MQGTAADIIKRAMILVDAWIQQQPEGRVALIM 881 Query: 627 TVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E + LM S +PL A+ + Sbjct: 882 QVHDELVLEVDTEHLAEVEQQVCKLMESAA--LLDVPLVADSGSGANW 927 >gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482] gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482] Length = 971 Score = 419 bits (1076), Expect = e-114, Method: Composition-based stats. Identities = 95/701 (13%), Positives = 208/701 (29%), Gaps = 160/701 (22%) Query: 2 ATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQV 56 + +D ET +T ++ +F + ++ D + Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRAEAQKIVNE 447 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE 114 + A E V V N ++ VL ++ T+V + + E Sbjct: 448 FRPAFEKEGVLKVGQNIKYDMLVLGNY-GTEVR-GPLFDTMVAHYVLQPELRHNMDYLAE 505 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + +ELI K + +Y D VT ++ Sbjct: 506 IYLH--YQTIHIEELIG---------PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNI 554 Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 LE E L + + G VD ++ ++++E+ Sbjct: 555 LEQELKTNDAEKLFYEIEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQ 614 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L + +++ LF + + T+T T + VL S + ++ + Sbjct: 615 LAGTD-FNIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEH 673 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + ++ L +N + T + TGR S QN+P + +E Sbjct: 674 R-GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKE- 731 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I +G + AD + IE R++A ++G+ + Sbjct: 732 ------------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMI 767 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ G+D++ T A+ + ++ +VT++QR+ K + G+++ Sbjct: 768 EAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGII--------------YGISV 813 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + + + ++ E Sbjct: 814 FGLAERMNVD------------------------------RKEAKELIDGYFETYPQIKE 843 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR D+ + S Sbjct: 844 YMDKSIDLAR--------------------------GQGYIETIFGRKRYLPDINSRNSV 877 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + R +Q + DI+ M+ + ++L VHDE+ Sbjct: 878 VRGY---AERNAINAP------IQGSAADIIKVAMVRIYQRFQSESIKSKMILQVHDELN 928 Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + M + + +PL+A+ + Sbjct: 929 FSVLPEEKEKVQKIVIEEMENA--YRMQVPLRADCGWGSNW 967 >gi|149908537|ref|ZP_01897199.1| DNA polymerase I [Moritella sp. PE36] gi|149808371|gb|EDM68308.1| DNA polymerase I [Moritella sp. PE36] Length = 931 Score = 419 bits (1076), Expect = e-114, Method: Composition-based stats. Identities = 101/705 (14%), Positives = 203/705 (28%), Gaps = 168/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + HD + Sbjct: 355 AFDTETTSLNYI----------QAELVGLSFAVAEGEAAYLPVAHDYIDAPEQLDRDHVL 404 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+++ V N ++++VL +++ + T++ + + + Sbjct: 405 ASLKTLLEDSNAKKVGQNLKYDKSVLANY-GINLAGIAY-DTMIESYVYNSIATRHDMDS 462 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + G + I+ E + ++ Y D VT + Sbjct: 463 LADKY--------LGHKTISF----EEIAGKGKKQLTFNQIELEQASAYAAEDADVTLRL 510 Query: 172 FKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P + E L + ++ +G +D + + + +L+ Sbjct: 511 HNVLWPKIEAEPSLVALFNEVELPLVSILSSVERQGVLIDKSKLDAQSVELGARMLELEA 570 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+ LF++ L + T +T + VL P + Sbjct: 571 KAHEIAEQP-FNLSSPKQLQEILFVKMELPVIKKTPKGAASTAEDVLQELALNYPLPKII 629 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R S+ + L + T + TGR S QN+P + Sbjct: 630 LEYR-SLSKLKSTYTDKLPTLIEEKTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRAGEG 688 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R I G K V D + IE R++A ++ ++ Sbjct: 689 RR-------------------------IRQAFIPETGYKYVAVDYSQIELRIMAHLSQDK 723 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F+V VT DQR K + G Sbjct: 724 GLLTAFSEGKDIHRATAAEVFSVELDDVTSDQRRSAKAINF--------------GLIYG 769 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + ++ + +++ Sbjct: 770 MS------------------------------AFGLGRQLNIPQKEAKKYMTRYFERYPG 799 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V +E + + + SGR L ++ Sbjct: 800 VLTYMDETRKVAKD--------------------------KGYVETLSGRRLYLPEINAR 833 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVH 629 + R +Q + DI+ + M+N +++ VH Sbjct: 834 NKM---SQMAAERAAINAP------MQGTASDIIKKAMINVAGWMETVETNSIRMLMQVH 884 Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + + LM + S +PL AE + Sbjct: 885 DELVFEIKEEHVEAYVVKIKELMAAAMS--LDVPLLAEAGVGDNW 927 >gi|88811281|ref|ZP_01126537.1| DNA polymerase I [Nitrococcus mobilis Nb-231] gi|88791820|gb|EAR22931.1| DNA polymerase I [Nitrococcus mobilis Nb-231] Length = 898 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 101/705 (14%), Positives = 202/705 (28%), Gaps = 169/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 D ET S + D ++ +F + H + Sbjct: 323 AFDLETTSLNYM----------DAEIVGLSFAVEPARAAYVPVAHIGQGVSPQLERGHVL 372 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 + L+ LE+ + N ++ +VL +++ + R T++ + + + Sbjct: 373 EQLRPLLEDPRRAKLGQNLKYDMSVLA-HYDIALRGVR-FDTMLESYILDSTATRHDMDS 430 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + G I K E + + A EY D + + Sbjct: 431 LALKY--------LGHRTI----KFEDVAGKGAKQLTFDQVAIERATEYAAEDADIALRL 478 Query: 172 FKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P + E L + + G V L + + +++ Sbjct: 479 HRVLYPKLRQLPGPERVFHAIEMPLLPVLSRMERTGVLVSRELLAAQSAELAQRLAEIEA 538 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + + ++++ L+ GL +T + VL P + Sbjct: 539 SVYRAAGC-EFNLGSPKQIQAVLYDRQGLPVLAKTPKGAPSTAESVLQELAATYPLPRMI 597 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 +R ++ + L ++ GR+ + + A+ TGR S QN+P S Sbjct: 598 LEHR-ALAKLKSTYTDKLPLLIHPRTGRVHTSYRQAVAA-TGRLSSSDPNLQNIPVRSPE 655 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA +G +L+ D + +E R++A +G+ Sbjct: 656 GRR-------------------------IRRGFIARQGYRLLAVDYSQVELRIMAHFSGD 690 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + +AF GED++ T A F A QVT +QR K + Sbjct: 691 ERLHRAFAAGEDIHRATAAEVFATALEQVTAEQRRAAKAIN--------------FGLIY 736 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + A + + + +++ Sbjct: 737 GMS------------------------------AYGLARQLGIERDAAQHYVERYFERYP 766 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V ++ + + GR L ++ Sbjct: 767 GVKAFM--------------------------ERIRREARERQYVETVFGRRLYLPEINA 800 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629 + + R +Q + DI+ M+ + +VL VH Sbjct: 801 SNAQRRQA---AERTAINAP------MQGSAADIIKRAMVRVDQWLQSEREDVFMVLQVH 851 Query: 630 DEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E P + A + M +PL E + Sbjct: 852 DELVFEVPTPDVQAVAERIRAFMVGAAE--LSVPLTVEAGWGDNW 894 >gi|260432091|ref|ZP_05786062.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157] gi|260415919|gb|EEX09178.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157] Length = 933 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 88/714 (12%), Positives = 189/714 (26%), Gaps = 176/714 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------ 51 L +D ET ++ ++ + + H Sbjct: 348 LAVDTETTGLNEMV----------ADLVGISLCIEPGEACYIPLTHRDGASDDLFGSDAL 397 Query: 52 --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 ++LK LE+ + + N ++ + + + T++++ + Sbjct: 398 AEGQMPLDEALKLLKPVLEDPSILKIGQNMKYDAKIFARY---GVDVAPIDDTMLMSYAM 454 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + E G I + + Y Sbjct: 455 HAGEHGHGMDTLSERY--------LGHTPIPI----KPLLGSGKSAITFDKVPIDEATAY 502 Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T ++K +P + E+ L + + G VD + ++ Sbjct: 503 AAEDADITLRLWKLFKPQLHRVQVTTVYETLERPLVPVLAQMEMHGIKVDRDVLSRMSNA 562 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSN 266 + L+ E+ L + +L LF + GL +T VL Sbjct: 563 FAQKMAALEAEIHELAG-ETFNVGSPAQLGEILFEKMGLEGGKKGKTGKYSTGADVLEDL 621 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 +V + R S+ + L +N D T + + TGR + Sbjct: 622 ATEHELPRKVLDWRQ-LSKLKSTYTDALQTHINPDTGRVHTSYAITGANTGRLASTDPNL 680 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P + +R +A G LV D + IE Sbjct: 681 QNIPVRTEEGRR-------------------------IREAFVAEPGNVLVSLDYSQIEL 715 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA +A +AF G D++ T + F+V ++T + R K + Sbjct: 716 RILAHIADIPALKQAFADGLDIHAMTASEMFDVPLDEMTPEIRRKAKAIN---------- 765 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ A + Sbjct: 766 ----FGVIYGIS------------------------------GFGLARNLRIPRAEAQGF 791 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + ++ + ++ ++ + + GR Sbjct: 792 IDRYFERFPGIRRYMDDTIAFAKE--------------------------HGYVQTLFGR 825 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY 622 + ++ R +Q + D++ M+ Sbjct: 826 KIHTPEINAK----GPHAGFARRAAINAP------IQGTAADVIRRAMVRMPEAIDGLPA 875 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEGYESKRY 673 ++L VHDE++ E + + +M + P A + L + + + Sbjct: 876 KMLLQVHDELLFEVAEDAVDQTIEIARDVMENAPDPAVKLDVKLTVDAGKGANW 929 >gi|332881618|ref|ZP_08449266.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680257|gb|EGJ53206.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 923 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 93/700 (13%), Positives = 204/700 (29%), Gaps = 159/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVL 57 L +D ET ++ ++ +F +++ D + Sbjct: 351 DFLSLDTETTGTDPIS----------AKLVGLSFSVEENQAFYVPIPQDFEEAQKIVNEF 400 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K E+ + + N ++ VL+ + + T++ + + E Sbjct: 401 KSVYEDERILKIGQNIKYDLMVLQNY-GITLK-GEIFDTMIAHYLLQPELRHGMDYLAEV 458 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + +ELI K EY D +T ++ Sbjct: 459 Y--LNYQTIHIEELIG---------PKGKNQKNMADLPPSQVYEYACEDADITLKLKNVF 507 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 EP E L + + G C+D + + E +L++E+ +L Sbjct: 508 EPKLKEEGCYDLFREVEMPLMPVLAWMERNGVCIDTEALKETSTLYTKEMNRLEEEIHAL 567 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL + + P ++ +R Sbjct: 568 AG-EPFNIASPKQVGEVLFEKLKISEKPKKTKTGQYVTSEEVLETLRTRHPIVEKILEHR 626 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N + T + TGR S QN+P + +E Sbjct: 627 -GLKKLLGTYIDALPKLINPETGHIHTSFNQTITTTGRLSSSNPNLQNIPVRNEEGKE-- 683 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I G + AD + IE R++A ++G+ ++ Sbjct: 684 -----------------------IRKAFIPEPGCEFFSADYSQIELRIMAHLSGDPHMIE 720 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ T A+ + +VT+++R+ K G+ + Sbjct: 721 AFREGHDIHAATAAKIYKKPLEEVTREERSKAKTANF--------------GIIYGITVF 766 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A + + + + +V E Sbjct: 767 GLAER------------------------------MNVSRAEAKELIDGYFTTYPKVKEY 796 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + + R RD+ ++ + + Sbjct: 797 MQKSIETARE--------------------------KGYTETIYHRKCYLRDINSHNAVV 830 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 R +Q + DI+ M+ ++L VHDE+ Sbjct: 831 RGY---AERNAINAP------IQGSAADIIKIAMIAIYHRFQKEHIRSKMILQVHDELNF 881 Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + M + +PL+A+ + + Sbjct: 882 SVYPEEKERVQQIVIEEMERA--YTMQVPLEADYGWGRNW 919 >gi|160877586|ref|YP_001556902.1| DNA polymerase I [Shewanella baltica OS195] gi|160863108|gb|ABX51642.1| DNA polymerase I [Shewanella baltica OS195] gi|315269784|gb|ADT96637.1| DNA polymerase I [Shewanella baltica OS678] Length = 921 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 105/704 (14%), Positives = 203/704 (28%), Gaps = 166/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54 +D ET S + ++ +F + HD V Sbjct: 345 AVDTETTSLDYMV----------AELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVAL 394 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113 + L+ LE+ + V N ++ ++L + + T++ + ++ G Sbjct: 395 EKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVA-FDTMLESYVFNSVASRHDMDG 452 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 ALK K +E + ++ Y D +T + + Sbjct: 453 LALKYLGHKNISFEE----------IAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQ 502 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P KE L + I +G +D L + + + L+++ Sbjct: 503 HLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKA 562 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ F + G + T +T + VL P + Sbjct: 563 YDIAG-EKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILE 621 Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R S+ + L +N GR+ A+ TGR S QN+P + Sbjct: 622 HR-SLSKLKSTYTDKLPLMVNAKTGRVHTNYHQANAA-TGRLSSSEPNLQNIPIRTEEGR 679 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R IA +G+K++ AD + IE R++A ++ + Sbjct: 680 R-------------------------IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 LKAF G+D++ T A F +VT +QR K + G+ Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVN--------------FGLIYGM 760 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A + + + ++ V Sbjct: 761 SAFGLARQLDI------------------------------PRHEAQTYIDTYFARYPGV 790 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 E + + GR L ++ + Sbjct: 791 LRYMEETRAGA--------------------------ADLGYVSTLFGRRLYLPEIRDRN 824 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHD 630 + R +Q + DI+ + M+N + +++ VHD Sbjct: 825 AMRRQ---GAERAAINAP------MQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHD 875 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E + LM + L AE + Sbjct: 876 ELVFEVDADKAEALKKTICTLMAQAAD--LDVELLAEAGIGNNW 917 >gi|260910758|ref|ZP_05917412.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str. F0295] gi|260635119|gb|EEX53155.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str. F0295] Length = 927 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 102/700 (14%), Positives = 200/700 (28%), Gaps = 159/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVL 57 + +D ET S + + ++ +F ++ + Sbjct: 355 DVISLDTETTSTNAI----------EAQLVGLSFAIEEKKAYYVPVPEQADEAQNIVNRF 404 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K EN V N ++ VL+ + + T+V + + E Sbjct: 405 KAIYENPKTLKVGQNIKYDLEVLRNY-GIALQ-GPLFDTMVAHYLLQPELRHNMDFMAEV 462 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + LI K A Y D +T ++ L Sbjct: 463 Y--LNYETVHIDALIG---------PKGKAQKNMRELAPSEVYNYACEDADITLQLKNVL 511 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P E L + + G +D A +Q+ +L+QE+ Sbjct: 512 QPKLVEAGVERLFNEVEMPLIPVLAEMECNGVRIDTAALKETSQVFTERMLQLEQEIYQA 571 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF E + T+T T + VL + + P + + R Sbjct: 572 AG-KTFNVASPKQVGDILFGEMKIIDKPKKTKTGQYVTSEEVLQTLRSKHPIVAHILDYR 630 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N T + TGR S QN+P +E Sbjct: 631 -ALKKLLGTYVDALPKLINPRTGHIHTSFNQAVTATGRLSSSDPNLQNIPVRGEDGKE-- 687 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R C I EG + AD + IE RV+A ++ + L Sbjct: 688 -----------------------IRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANMLD 724 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ T A+ +N ++VT+D+R K + G+ + Sbjct: 725 AFREGYDIHAATAAKIYNKPVSEVTRDERTKAKRANFGII--------------YGITVF 770 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A + A +++ + + +V + Sbjct: 771 GLADRLNIERA------------------------------EAKQLIDGYFKMFPQVQQY 800 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + N + R D+ + + Sbjct: 801 MEQAKETAR--------------------------ANGYVETFFHRRRYLPDINSGNA-- 832 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 T R +Q + DI+ M+ ++L VHDE+ Sbjct: 833 -TVRAIAERNAINAP------IQGSAADIIKVAMVRIFQRFQRENIRSKMILQVHDELNF 885 Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 T++ + M + + +PL A+ + Sbjct: 886 SVLPTEKEQVERIVMEEMQAA--YLLDVPLVADSGWGNNW 923 >gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7] gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7] Length = 922 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 101/704 (14%), Positives = 201/704 (28%), Gaps = 166/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 +D ET S + ++ +F + HD Sbjct: 346 AVDTETTSLDYMV----------AELVGLSFAVEAGKAAYLPLAHDYVGAPQQLDKQTAL 395 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113 + L+ LE+ + V N ++ +VL + + T++ + ++ G Sbjct: 396 EKLRPILEDAKLKKVGQNLKYDISVLANA-GIQLK-GVVFDTMLESYVFNSVASRHDMDG 453 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 ALK K ++ + ++ Y D +T + + Sbjct: 454 LALKYLGHKNIAFED----------IAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQ 503 Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E L + I +G +D L + + + +L+ + Sbjct: 504 HLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETKA 563 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ F + G + T +T + VL P + Sbjct: 564 YDIAG-EKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLPKVILE 622 Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R ++ + L +N GR+ + A+ TGR S QN+P + Sbjct: 623 HR-SLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEGR 680 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R IA +G+K++ AD + IE R++A ++ + Sbjct: 681 R-------------------------IRQAFIAPQGRKILAADYSQIELRIMAHLSQDAG 715 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 LKAF G+D++ T A F VT +QR K + G+ Sbjct: 716 LLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVN--------------FGLIYGM 761 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A + + + ++ V Sbjct: 762 SAFGLARQLDI------------------------------PRNEAQTYIDTYFARYPGV 791 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 E + + + GR L ++ + Sbjct: 792 LRYMEETRASAAE--------------------------LGYVSTLFGRRLYLPEIRDRN 825 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHD 630 + R +Q + DI+ + M++ +++ VHD Sbjct: 826 AMRRQA---AERAAINAP------MQGTAADIIKKAMISIADWIKTDTQGEITMIMQVHD 876 Query: 631 EIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E + LM + L AE + Sbjct: 877 ELVFEVDADKAETLKLKVCELMAKAA--NLDVELLAEAGIGDNW 918 >gi|119946792|ref|YP_944472.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and 3'->5' exonuclease [Psychromonas ingrahamii 37] gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and 3'->5' exonuclease [Psychromonas ingrahamii 37] Length = 938 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 105/711 (14%), Positives = 202/711 (28%), Gaps = 172/711 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---------PVELWDCVHDP---- 51 D ET S + ++ +F + HD Sbjct: 354 SFDTETTSLDYM----------QARIVGLSFAVQSNVGSDEQPIIEAAYLPLAHDYIDAP 403 Query: 52 ------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 + L+ LE+ V N ++R+VL +++ + T++ + Sbjct: 404 KQLDLTTTLEKLRPLLESEKYKKVGQNLKYDRSVLLNH-GIELKGIK-FDTMLESYVLDS 461 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 ALK G + I+ E + P ++ + Y D Sbjct: 462 TGRHDMDTLALKY------LGHQCISF----EEIAGKGKKQLPFNQISIIEAAPYAAEDA 511 Query: 166 TVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 VT + +L + E L + I G +D L + + Sbjct: 512 DVTLRLHLQLFEQLSAEPKLLSVFNNIELPLLTVLSDIERGGVEIDSDLLTKQSAEIGKR 571 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLT 270 +L+ + ++L+T L+ E L + T +T + VL Sbjct: 572 LLELEALAYEEAG-KPFNLSSPKQLQTILYDELELPVLKKTPKGAPSTAEEVLQELALTY 630 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 P + +R S+ + L + +N T + TGR S QN+P Sbjct: 631 PLPKLIIEHR-GLSKLKSTYTDKLPKMVNEKTGRLHTSYQQAVTVTGRLSSTDPNLQNIP 689 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 S +R IA G K+V AD + IE R++A Sbjct: 690 IRSAEGRR-------------------------IRQAFIAQPGYKIVAADYSQIELRIMA 724 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ ++ L AF TG+D++ T + F+V +VT +QR K + Sbjct: 725 HLSQDKGLLDAFSTGKDIHKATASEVFSVPLDEVTTEQRRSAKAINF------------- 771 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 G++ A + + + Sbjct: 772 -GLIYGMS------------------------------AFGLAKQLNIGRHEAQLYMDKY 800 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 ++ V + + + GR L Sbjct: 801 FNRYPGVLIYMEDTRSLANE--------------------------KAYVETILGRRLQL 834 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------D 623 ++ + L + R +Q + DI+ + M++ Sbjct: 835 PNIKSRNGMLK---KAAERAAINAP------MQGTAADIIKKAMIDMADWIAQKSPGSVQ 885 Query: 624 IVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++ VHDE+V + + + +M +PL A+ + Sbjct: 886 MLMQVHDELVFSIKEELVESYTKEIQAIMAKAAD--LDVPLIADAGVGDNW 934 >gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583] gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583] Length = 968 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 107/715 (14%), Positives = 215/715 (30%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---------DPVM 53 D ET S + ++ F+ + H + Sbjct: 380 YFSFDTETTSLDPM----------QAKLVGFSLALQPNKAAYIPLEHIEGGNDLFGGERI 429 Query: 54 PQV---------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 LK LEN V + N ++ V++ DI I + T++L+ Sbjct: 430 VGQIETQRALALLKPILENQAVLKIGQNMKYDWLVMRQY---DITIRSFDDTMLLSYVLD 486 Query: 105 ---LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G IA + C + + + Y Sbjct: 487 AGISTHGMDVLSERW--------LGHTPIAY----KNLTCDGKKIVSFAQVDLKQATLYA 534 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D +T +++ L+P ++ L + + +RG VD + L+ + Sbjct: 535 AEDADITLRLWQVLKPQLVAQGMTKIYERLDRPLIEVLARMEERGILVDRQILSCLSGEL 594 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 L++E+ L + ++L LF + GL T+ +T ++L Sbjct: 595 AQAALSLEEEIYQLAG-EQFNIASPKQLGDILFSKIGLPGGAKTKGGQWSTSAQILEELA 653 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L ++ T L + TGR S Q Sbjct: 654 AEGHMLPRKIVDWRQIAKLKSTYTDALPSYISPKTGRVHTNYSLATTSTGRLSSSEPNLQ 713 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IASEG L+ AD + IE R Sbjct: 714 NIPIRTIEGRK-------------------------IRTAFIASEGCLLLSADYSQIELR 748 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA +A +AF G+D++ T ++ F VA +++ D R K + Sbjct: 749 LLAHIADITALKEAFAQGQDIHAMTASQMFGVAIERMSSDVRRRAKAINF---------- 798 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A + Sbjct: 799 ----GIIYGIS------------------------------AFGLANQLGISREEASHYI 824 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + Q + + GR Sbjct: 825 RVYFERFPGIQSYMEATKIFARQ--------------------------HGYVETIFGRR 858 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG-- 621 + Y ++ R +Q + DI+ M+ K G Sbjct: 859 IHYPEIKARD---RQVRAFNERAAINAP------IQGSAADIIRRAMIQMEGALEKEGLS 909 Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P + E +++ +M + P+ + +PL+ + ++ + Sbjct: 910 AKMLLQVHDELIFEIPKAESEKTKAIVKKVMENATMPALSLSVPLEVKVMVAQNW 964 >gi|255320831|ref|ZP_05362005.1| DNA polymerase I [Acinetobacter radioresistens SK82] gi|262380276|ref|ZP_06073431.1| DNA polymerase I [Acinetobacter radioresistens SH164] gi|255302000|gb|EET81243.1| DNA polymerase I [Acinetobacter radioresistens SK82] gi|262298470|gb|EEY86384.1| DNA polymerase I [Acinetobacter radioresistens SH164] Length = 919 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 107/702 (15%), Positives = 194/702 (27%), Gaps = 167/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 ID ET S ++ F+ FD HD + Sbjct: 348 AIDTETTSLD----------YRVAEMVGFSVAFDAKDAYYVPLAHDYAGAPEQLNREQVL 397 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 +K LEN V + H+ ++ + +++ + T++ + + Sbjct: 398 AQIKPILENDQVEKIGHHLKYDAHIFANH-GIELK-GWFFDTMLASYVLNSVATRHGMDD 455 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 V L E + K ++ + Y D VT + Sbjct: 456 VARLY------------LSHLTTTFEQVAGKGAKQKSFNQIELEVASPYAAEDAHVTYRL 503 Query: 172 FKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQ 220 ++ L EL + I G +D L+ +L+Q Sbjct: 504 YEVLAEKLKAHPELCNILYNIEMPVARILTGMEEDGIRLDHGFLDQLSIEFAKTMQELEQ 563 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + +++ LF + G+ T +T + +L P A + Sbjct: 564 QAMEMAG-ETFNIASPKQVGEVLFEKLGIKGGKKTTTGQFSTSESILEKI--EHPIAAVI 620 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R ++ + LV+ N+ T + TGR S QN+P Sbjct: 621 LEHR-SLAKLKSTYTDALVKQSNNSTHRVHTSYHQALTATGRLSSSDPNLQNIPIRGEIG 679 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA G+ L+ AD + IE R++A + + Sbjct: 680 R-------------------------QIRKAFIAPAGRVLLAADYSQIELRLMAHFSQDD 714 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A +A VT DQR K + G Sbjct: 715 ALLDAFRHGQDVHRRTAAEVLGIALEDVTNDQRRQAKAVN--------------FGLLYG 760 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ F + K + ++ Sbjct: 761 MSEFGLIRQ------------------------------LGFTRQESQDYIKQYFHRYPG 790 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + E Q + + GR L D+ Sbjct: 791 IYEYMQRTRQLALE--------------------------QGFVDTLFGRRLYTPDIDAR 824 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDIVLTVHDEI 632 + + R Q + DI+ M+ K ++L VHDE+ Sbjct: 825 NMMVR---KAAERAAINAPL------QGSAADIIKLAMIAVDKILPKDQARLLLQVHDEL 875 Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E + + L +M S +PL E + + Sbjct: 876 VFEVDENIADELAPQLAEVMESVVE--ISVPLLVEVGKGCNW 915 >gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 942 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 102/702 (14%), Positives = 197/702 (28%), Gaps = 166/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMPQV 56 +D ET S A ++ + H ++ Sbjct: 370 AVDTETTSLD----------AFAAELVGISLSVKPGEACYIPVAHRNGEAQLDRDLVLAR 419 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGE 114 +K LE+ V N ++ + + + TL+ + LP + ++ E Sbjct: 420 MKSWLESATHLKVGQNLKYDSHIFANY-GITLK-GVVFDTLLESYVLESHLPHNMDSLAE 477 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 G + I E + ++ +Y D +T + Sbjct: 478 RH--------LGMKTIRY----EEVCGKGVHQIGFDQVDLKIATDYAAEDADITLRLHLE 525 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P + E + + G +D AL Q V +L+ E+ Sbjct: 526 LWPQIQESPGLLYVYEKVEMPAMRVLGIMERNGIRIDSALLAKQGQQVGKRLLELEGEIH 585 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L + + +++ LF + L + T + T + VL + P ++ + Sbjct: 586 KLAGQP-FNIQSPKQIAEILFGQLELPVIKKTPSGAPSTDEEVLQKLAEDYPLPARILDY 644 Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + GR+ A TGR + QN+P + Sbjct: 645 R-SLAKLMSTYIEKLPRMADPKTGRVHTNFSQATA-VTGRLASSDPNLQNIPVRTEEGRR 702 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R I +EG KL+ AD + IE R++A +A ++ Sbjct: 703 -------------------------IREAFIPAEGCKLLSADYSQIELRIMAHIAEDENL 737 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A F V V+ +QR G++ Sbjct: 738 LTAFRDGKDVHQATAAEIFGVPLDDVSSEQRRYA--------------KVINFGLIYGMS 783 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A +A + + ++ V+ Sbjct: 784 ------------------------------AFGLAGNLGIECSAAQNYIAKYFDRYPGVA 813 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + N + GR L ++ + Sbjct: 814 QYMERTRLEARE--------------------------NGYVETVFGRRLWSPEIKGSNG 847 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632 R +Q + D++ M+ ++L VHDE+ Sbjct: 848 PRRQ---GAERAAINAP------MQGTAADLIKLAMIAVEDWFEKEQLKTKMLLQVHDEL 898 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V + P + + L +LM +PL + Sbjct: 899 VFDVPLDEIELLQAKLPNLMCHVAQ--LKVPLAVSIGIGDNW 938 >gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z] gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z] Length = 956 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 98/728 (13%), Positives = 204/728 (28%), Gaps = 190/728 (26%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------------- 49 + +D ET S +T ++ +FG ++ H Sbjct: 357 IAVDTETDSLDAMT----------AELVGISFGLENGEACYIPLAHVHEVAEAEEQAQAD 406 Query: 50 ---------------------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 LK LEN D+ + N ++ T+ + + Sbjct: 407 LFAEPKATGKTSWHRLPDQLNREDCLARLKPVLENADIRKIGQNLKYDLTIFANH-GIQV 465 Query: 89 PIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 T++ + + + E G + I+ ET Sbjct: 466 QGVA-FDTMLESYVLNSTGRHNMDDLAERY--------LGHQTISF----ETLAGKGKNQ 512 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTINDR 195 + EY D VT ++ + L E L + I Sbjct: 513 LTFDKIPLAQAAEYAAEDADVTMKLHQTLWAELEKTPTLTTLFKDIELPLVSVLSRIERN 572 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----L 251 G +D +Q T L+ + + + ++L+ LF + L Sbjct: 573 GVLIDAQALRKQSQEFGERLTALEAKAHEIAG-EAFNLASPKQLQEILFNKLHLPVLQKT 631 Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 +T + VL + +R ++ + L + +N T Sbjct: 632 PKGDPSTKEEVLEELAFDHELPKLLVEHR-GLAKLKSTYTDKLPQMINPHTGRVHTSYHQ 690 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 + TGR S QN+P + +R +A Sbjct: 691 AVTATGRLSSTDPNLQNIPIRNEEGRR-------------------------IRQAFVAR 725 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 +G +++ AD + IE R++A ++G++ AF G D++ +T + F + V+ +QR Sbjct: 726 DGYRIIAADYSQIELRIMAHLSGDKGLTTAFVEGRDIHRSTASEIFGIPLEDVSAEQRRS 785 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + G++ + + Sbjct: 786 AKAINF--------------GLIYGMSAFGLSRQLAI----------------------- 808 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 ++ + Q++ V +++ + + Sbjct: 809 -------SRMEAKKYMDLYFQRYPNVQTFMHDIQEKAK---------------------- 839 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + GR L D+ + + + + R +Q + DI+ Sbjct: 840 ----AQGFVETLFGRRLYLPDIKSGNA---SRRKGAERVAINAP------MQGTAADIIK 886 Query: 612 EGMMNATK-----AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKA 665 M++ +++ VHDE+V E + EF + ++ M + +PL Sbjct: 887 RAMIDIDHVIAGDEDILMIMQVHDELVFEVRSEKVEFYSELIKQKMETAAQ--LDVPLIV 944 Query: 666 EGYESKRY 673 E + Sbjct: 945 EAGVGANW 952 >gi|56698655|ref|YP_169032.1| DNA polymerase I [Ruegeria pomeroyi DSS-3] gi|56680392|gb|AAV97058.1| DNA polymerase I [Ruegeria pomeroyi DSS-3] Length = 933 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 86/714 (12%), Positives = 187/714 (26%), Gaps = 176/714 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------ 51 + +D ET S ++T ++ + + H Sbjct: 348 VAVDTETTSLNEMT----------ADLVGISLAVEPGAACYIPLGHRDGDAGDLFGSDKL 397 Query: 52 --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 +LK LE+ + + N ++ + + + T++L+ + Sbjct: 398 AEGQLPLQQTLDLLKPMLEDPAILKIGQNMKYDAKIFARY---GVAVAPIDDTMLLSYAM 454 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + E L + + A Y Sbjct: 455 HGGLHGHGMDTLSERY------------LSHTPIPIKPLLGSGKSAITFDKVAIDEATAY 502 Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T +++ +P + E+ L + + G VD + ++ Sbjct: 503 AAEDADITLRLWQLFKPQLHRAQVTTVYETLERPLVPVLAEMEMHGVKVDREVLSRMSNA 562 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSN 266 + L+ E+ L + ++ LF + L +T VL Sbjct: 563 FAQKMAGLEAEIHELAG-EPFNVGSPAQVGEILFDKMSLEGGKKGKTGKYSTPADVLEDL 621 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 ++ + R S+ + L +N D T + + TGR + Sbjct: 622 ATEHELPARILDWRQ-LSKLKSTYTDALQTHINPDTGRVHTSYSITGANTGRLASTDPNL 680 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P + +R +A G L+ D + IE Sbjct: 681 QNIPVRTEEGRR-------------------------IREAFVAEPGNVLLSLDYSQIEL 715 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA +A +AF G D++ T + F+V Q+T + R K + Sbjct: 716 RILAHIADIPALKQAFADGLDIHAMTASEMFDVPLDQMTPEVRRRAKAINF--------- 766 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ A + Sbjct: 767 -----GVIYGIS------------------------------GFGLARNLRIPRAEAQEF 791 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + ++ + ++ ++ + + GR Sbjct: 792 IDRYFERFPGIRTYMDDTIAFAKE--------------------------HGFVQTLFGR 825 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY 622 + ++ R +Q + D++ M+ Sbjct: 826 RIHTPEINAK----GPHAGFARRAAINAP------IQGTAADVIRRAMVRMPDAIRDLPA 875 Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673 ++L VHDE++ E + E + +M A + L + + Sbjct: 876 KMLLQVHDELLFEVAEEAVEDTIAAARDIMEGAADPAVRLDVRLVVDAGRGANW 929 >gi|15602930|ref|NP_246002.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. Pm70] gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida subsp. multocida str. Pm70] Length = 930 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 101/705 (14%), Positives = 209/705 (29%), Gaps = 165/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 + ID ET S + ++ +F ++ HD Sbjct: 354 KCIAIDTETDSLDYMV----------AHLVGVSFALENGEAAYLPLRHDYLGAPQQVDFQ 403 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 +LK LEN ++ V N ++ ++ +++ + T++L+ + Sbjct: 404 TALSLLKPVLENPEIHKVGQNIKYDLSIFARH-GIEVQGVSY-DTMLLSYVLDSTGRHNM 461 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G + I E ++ EY D +T Sbjct: 462 DELAKRY--------LGHQTIHF----EDIAGKGKAQLTFNQIPLEQAAEYAAEDADITM 509 Query: 170 EIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L + E L + I G +D + +Q + V T L Sbjct: 510 KLQQVLWEKVAAQPELVKLYQTMELPLASVLSRIERHGVLIDSDALFSQSQQIGVRLTAL 569 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274 +Q+ L + ++L+ LF + L + T +T + VL Sbjct: 570 EQQAYELAGQQ-FNLASTKQLQEILFDKLSLPVLKKTPKGAPSTNEEVLEELAYEHALP- 627 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ S+ + L +N D T + TGR S QN+P + Sbjct: 628 KILVEHRGLSKLKSTYTDKLPLMVNKDTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA EG +++ AD + IE R++A ++ Sbjct: 688 EGRR-------------------------IRQAFIAPEGYQIMAADYSQIELRIMAHLSQ 722 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ + AF G+D++ +T A F + AQV+ +QR K + Sbjct: 723 DKGLINAFNEGKDIHRSTAAEIFGIPLAQVSSEQRRSAKAINF--------------GLI 768 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + ++ + Q++ Sbjct: 769 YGMSSFGLSRQ------------------------------LGIPRHEAQKYMDLYFQRY 798 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V +++ + + + R L D+ Sbjct: 799 PGVQAFMHDIRETAK--------------------------AQGYVTTLFDRRLYLPDIQ 832 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629 ++ + + R +Q + DI+ M+ + +++ VH Sbjct: 833 SSNAIRR---KAAERVAINAP------MQGTAADIIKRAMITLDREIAGQPDIKMIMQVH 883 Query: 630 DEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + + M +PL + K + Sbjct: 884 DELVFEVRTDKIEHFRTIIKTTMEQAAQLV--VPLIVDVGVGKNW 926 >gi|332678896|gb|AEE88025.1| DNA polymerase I [Francisella cf. novicida Fx1] Length = 897 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 107/702 (15%), Positives = 212/702 (30%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 323 AFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVL 372 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK ++ VAHN F+ VL ++I + T+++A Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDMDSL 430 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + K G E IA + + + + +Y D +T +F Sbjct: 431 S------KEHLGIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH 480 Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223 + L +++ L+ L + G +D + ++ +L+ + Sbjct: 481 FKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCY 540 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 +L + +L+ LF + GL T +T + VL + A + Sbjct: 541 NLAGQ-EFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKY 599 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L + ++++GR+ + G + TGR S QN+P S + Sbjct: 600 RH-LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 656 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA +G +V AD + IE R++A ++ ++ L Sbjct: 657 ------------------------IREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLL 692 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 KAF D++ T A ++ +V+ +QR K + G++ Sbjct: 693 KAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAIN--------------FGLIYGMSA 738 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A ++ + + ++ V E Sbjct: 739 FGLARQLEI------------------------------PRAEAQEYIDIYFNRYPSVKE 768 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + +Q N + GR L ++ + Sbjct: 769 YMTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVM 802 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632 R +Q + DI+ + M+N + +V+ VHDE+ Sbjct: 803 QRNA---AERAAINAP------MQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDEL 853 Query: 633 VCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E E + + +M + +PL+ K + Sbjct: 854 VFEVKKTKLEEIVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893 >gi|299771514|ref|YP_003733540.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1] gi|298701602|gb|ADI92167.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1] Length = 923 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 109/705 (15%), Positives = 196/705 (27%), Gaps = 167/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 ID ET S ++ F+ FD H Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAQDAYYVPLAHNYENAPQQLDRE 398 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + +K LEN V + H+ ++ + +++ + +++ + Sbjct: 399 QILAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 456 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V L E + K ++ + Y D VT Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217 +++ L EL + I G +D A L+ Sbjct: 505 YRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEG 564 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+ + + + +++ LF + G+ T +T + VL P A Sbjct: 565 LENQAMEI-ADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLA 621 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + +R ++ + LVE ++D T + TGR S QN+P Sbjct: 622 EIILEHR-GLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + I +R IA EG+ L+ AD + IE R++A + Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + + AF+ G+D++ T A +A VT DQR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ F + K + Q+ Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTRQESQNYIKQYFQR 791 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + E Q + GR L D+ Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629 + + R Q + DI+ M+ K ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKIAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + +M S +PL E + K + Sbjct: 877 DELVFEADQNIAEELSKQIAKVMESVVE--ISVPLVVEVGQGKNW 919 >gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG] gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG] Length = 897 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 108/702 (15%), Positives = 211/702 (30%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 323 AFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELEFVL 372 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK ++ VAHN F+ VL ++I + T+++A Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDMDSL 430 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + K G E IA + + + + +Y D +T +F Sbjct: 431 S------KEHLGIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNY 480 Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223 + L +++ L+ L + G +D A + ++ +L+ + Sbjct: 481 FKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQSASLETSIKELESKCY 540 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 +L +L+ LF + GL T +T + VL + A + Sbjct: 541 NLAGQ-EFKLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKY 599 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L + ++++GR+ + G + TGR S QN+P S + Sbjct: 600 RH-LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 656 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA G +V AD + IE R++A ++ ++ L Sbjct: 657 ------------------------IREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLL 692 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 KAF D++ T A ++ +V+ +QR K + G++ Sbjct: 693 KAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAIN--------------FGLIYGMSA 738 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A ++ + + ++ V E Sbjct: 739 FGLARQLEI------------------------------PRAEAQEYIDIYFNRYPSVKE 768 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + +Q N + GR L ++ + Sbjct: 769 YMTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVM 802 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632 R +Q + DI+ + M+N + +V+ VHDE+ Sbjct: 803 QRNA---AERAAINAP------MQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDEL 853 Query: 633 VCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E E + + +M + +PL+ K + Sbjct: 854 VFEVKKTKLEEIVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893 >gi|304320442|ref|YP_003854085.1| DNA polymerase I [Parvularcula bermudensis HTCC2503] gi|303299344|gb|ADM08943.1| DNA polymerase I [Parvularcula bermudensis HTCC2503] Length = 940 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 97/715 (13%), Positives = 196/715 (27%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---------- 52 + ID ET + + + +F H Sbjct: 352 IIAIDTETDNLEGMK----------ANLCGISFSIVPGKAYYVPVGHGQTDLSLDDPEHS 401 Query: 53 -------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 +LK L + + V N ++ +L+ DI + + T++L+ + Sbjct: 402 QQMSEATALDILKPVLLDPSILKVGQNLKYDLLILRE---RDIDVVGYDDTMLLSYAADC 458 Query: 106 P----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + + G E I + + K + Y Sbjct: 459 GFASLHGMDELSKRH--------LGHEPIPY----KEIVGTGKKQKTFGDVPIKDAYIYA 506 Query: 162 KGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT + L+ + ++ L + + G VD L+ Sbjct: 507 AEDADVTLRLHTILKSRAIESQVYTVYETMDRPLVSVITDMERAGIKVDRDRLSALSGEF 566 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + + + + +++ LF + GL T+ +T L + Sbjct: 567 AQRMAAHEAAVHDIAG-ERFNLASPKQIGDILFGKLGLPGGKKTKTGAWSTAADTLETLA 625 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + Q + ++ + L E+++ T L ++ TGR S Q Sbjct: 626 ADGAEIAQEILSHRGLAKLKGTYTDALSESIHPKTGRVHTSFSLASTTTGRLSSNDPNLQ 685 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R I +G L+ AD + IE R Sbjct: 686 NIPIRTEDGRK-------------------------IREAFIPEDGNVLISADYSQIELR 720 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA +A ++AF G D++ T A F V + R K + Sbjct: 721 LLAHIAEIGPLIEAFHQGLDIHAMTAAEVFGVPLEGMDPSIRRQAKAIN----------- 769 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A Sbjct: 770 ---FGIIYGIS------------------------------AFGLARNLGIGRDEASLFI 796 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 K + ++ + +E + + + GR Sbjct: 797 KRYFERFPGIKAYMDETIEGAR--------------------------VHGYVETLFGRR 830 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAG 621 ++ + R+ +Q + DI+ M+ + Sbjct: 831 SHTPNIKAKQP---NIRMGAERQAINAP------IQGSAADIVKRAMIRVPAALAAHRLS 881 Query: 622 YDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E P + A++L +M P+ + +PL E + + Sbjct: 882 AKMLLQVHDELVVECPADQADETAAVLKDVMEGAAGPALSLSVPLVVEAGQGASW 936 >gi|83859032|ref|ZP_00952553.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633] gi|83852479|gb|EAP90332.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633] Length = 924 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 100/715 (13%), Positives = 204/715 (28%), Gaps = 172/715 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51 + +D ET + + ++ + + H+ Sbjct: 337 RVIAVDVETDALSAVAS----------RLVGVSLATAPNEACYIPLGHEGGDLADGGMKP 386 Query: 52 ------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 LK LEN + V N ++ V + + + + T++++ Sbjct: 387 DQIDESEALGRLKAILENDAILKVGQNFKYDLAVFQRY---GVRVAPYDDTMLISYVQAA 443 Query: 106 P---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 + + E G I+ + K + EY Sbjct: 444 GLHNHGMDELAERH--------LGHTCISF----KEVCGTGKSQKRFSEIDLKTATEYAA 491 Query: 163 GDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D +T +++ L+ + E+ L + + G VDVA L+ Sbjct: 492 EDADITLRLWELLKAGLAGKGLSTVYETLERPLPQVLTDMELAGVKVDVAQLSRLSSDFA 551 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268 + + ++ L + +++ LF E GL T++ T VL Sbjct: 552 QKMAEAEETAHKLAGTK-FNLGSPKQIGEILFGEMGLPGGKKTKSGAWSTDAAVLDELAA 610 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + + S+ + L +A+N + T L A+ TGR S QN Sbjct: 611 QGHDLPKALLTWRQFSKLKSTYSDALKDAINPNTGRVHTSFSLAATTTGRLSSSEPNLQN 670 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +P + + +R A G +V AD + IE R+ Sbjct: 671 IPIRTEEGRK-------------------------IREAFTAEPGHVIVAADYSQIELRL 705 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A + +AF G+D++ T + F V + R K + Sbjct: 706 LAHIADVEALKQAFREGQDIHALTASEMFGVPLENMDPTTRRNAKAINF----------- 754 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 G++ A + Sbjct: 755 ---GIIYGIS------------------------------AFGLANNLGIGRDEAKSYID 781 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 ++ +K + + + + + + GR + Sbjct: 782 SYFKKFPGIKDYMDAMKDEAK--------------------------AKGCVSTIFGRRI 815 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGY 622 + + + T R+ +Q + DI+ M+ Sbjct: 816 HLPGIKDKNPSVRQFT---ERQAINAP------IQGAAADIIRRAMVRMPGALSDAGLKT 866 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSN--PSWAKGLPLKAEGYESKRYR 674 ++L VHDE+V E P+++ L +M++ P+ +PL+ E + + Sbjct: 867 RMLLQVHDELVFEAPESEADQVIKLVTEVMSTAALPAQNLSVPLEVEAKAASTWG 921 >gi|90420752|ref|ZP_01228658.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] gi|90335043|gb|EAS48804.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] Length = 976 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 104/720 (14%), Positives = 216/720 (30%), Gaps = 179/720 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------------- 49 L D E S + ++ +F H Sbjct: 382 LAFDTEASSLSAMKC----------DLVGVSFATRAGRAAYVPLAHVSPSGEADLLSDKA 431 Query: 50 -----DPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99 P +P +LK LE+ V + N ++ V++ I + + T+++ Sbjct: 432 VEDEIGPQLPIDEALAILKPVLEDDAVLKIGQNVKYDYLVMRRH---GITMAPFDDTMLI 488 Query: 100 ARSNGLPSALKAVGEALKLSSQKMEE---GKELIARFCKGETHECLYDRNKPNHREAWRL 156 + + ++L ++ E G + ++ + +P A Sbjct: 489 SYALDASASLA------GHGMDELSERFLGHKPMSY----KELCGSGKGARPIAACAIDK 538 Query: 157 FGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHT 206 Y D VT +++ L+P E+ L + + +RG VD + Sbjct: 539 VTAYAAEDADVTLRLWQVLKPRLVAEGLATVYERLERPLVAVLARMEERGIKVDRQILSR 598 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRV 262 L+ ++ L+ E+ + + ++L LF + GL T++ T RV Sbjct: 599 LSGRFAQKQAGLEAEIAEIAG-ETFNPGSPKQLGEVLFGKLGLPGGKKTKSGQWSTDVRV 657 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L + + + ++ +TL M++ GR+ + ++ TGR S Sbjct: 658 LEDLAAEGHPLPRRIVDWRQLTKLKGTYTDTLPGHMDAQGRIHTSYSMA-STTTGRLSSS 716 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 QN+P + +R+ +A G LV AD + Sbjct: 717 EPNLQNIPVRTEEGRA-------------------------IRTAFVAPAGHSLVSADYS 751 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R+LA +A +AF G D++ T + F V + + R K + Sbjct: 752 QIELRILAHIADIPQLKEAFREGLDIHAMTASEMFGVPVEGMPSEIRRRAKAINF----- 806 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 G++ A+ + Sbjct: 807 ---------GIIYGISAFGLANQLSI------------------------------PRDE 827 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 K + ++ + + + ++ + + Sbjct: 828 AGTYIKRYFERFPGIRDYMDSTKAFAKE--------------------------HGHVET 861 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 GR + Y D+ + + + R +Q + DI+ M+ A Sbjct: 862 LFGRRVHYPDIRSPNA---SVRAFNERAAINAP------IQGTAADIIRRAMIRMEPALA 912 Query: 621 ----GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E D ++ +M P +P++ + + + Sbjct: 913 DAGLSARMLLQVHDELIFEVEDDQIDATLPVVRRVMEEAALPVVQLSVPIEVDAKAAANW 972 >gi|119470389|ref|ZP_01613117.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Alteromonadales bacterium TW-7] gi|119446314|gb|EAW27590.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Alteromonadales bacterium TW-7] Length = 911 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 108/703 (15%), Positives = 202/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F HD + Sbjct: 335 AFDTETTSLDYM----------QAQLVGMSFSVKAGEAAYLPVAHDYPDAPEQLSLEFVM 384 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113 Q L L + + V N ++++VL ++ + T++ + Sbjct: 385 QKLGPILADANKAKVGQNLKYDKSVLANA-GYELNGIK-FDTMLESYVFNSVGTRHDMDS 442 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 ALK K ++ + ++ Y D +T + + Sbjct: 443 LALKYLGHKNISFED----------IAGKGKKQLTFNQIELDKAAPYAAEDADITLRLHE 492 Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E L + I G +D ++ +Q + +L++E Sbjct: 493 VLWPKIEADEKLKSVFEDIEMPLVSVISDIERTGVAIDSSMLGAHSQRLGERLIELEKEA 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + L + T +T + VL P + Sbjct: 553 FEIAG-EPFNLSSPKQLQVLLFEKLELPIIKKTPKGAPSTAEEVLQELAHDYPLPKVIIE 611 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R S+ + L +N + T + TGR S QN+P S Sbjct: 612 HR-GLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIPIRSEEGRR 670 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA++G K+V AD + IE R++A ++ ++ Sbjct: 671 -------------------------IREAFIAADGYKIVAADYSQIELRIMAHLSQDKGL 705 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G D++ T A F V VT D R K + G++ Sbjct: 706 LNAFANGLDVHSATAAEVFGVDLDDVTTDMRRKAKAVNF--------------GLIYGMS 751 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + ++ V Sbjct: 752 ------------------------------AFGLARQLDVPRHEAQHYIDKYFERFPGVL 781 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E + + N + GR L ++ Sbjct: 782 EYMETTREKAAE--------------------------NGYVETIFGRRLHLPEINARNG 815 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTVHDE 631 + R +Q + DI+ + M++ + Y +++ VHDE Sbjct: 816 ARR---KGAERAAINAP------MQGTAADIIKKAMLSVNQWVYEQAPNTVKLLMQVHDE 866 Query: 632 IVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E E + LM+ S +PL E E + + Sbjct: 867 LVFEIKTDCAEAYTKQICELMSQAAS--LDVPLIVEADEGENW 907 >gi|254281931|ref|ZP_04956899.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR51-B] gi|219678134|gb|EED34483.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR51-B] Length = 911 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 109/701 (15%), Positives = 197/701 (28%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ F+ HD + Sbjct: 336 AFDTETTSLNYM----------QARLVGFSMAIRPGTAAYVPLGHDYPGAPDQLDFEQVL 385 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LEN D+ + N ++ +L + + T++ + L +VG Sbjct: 386 AKLKPILENADILKLGQNLKYDSNILCNH-GITLRGIT-EDTMLESYV------LDSVGT 437 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S + K L K + + ++ A Y D VT + + Sbjct: 438 RHDMDSLAL---KYLGRGTTKFQDIAGKGAKQLTFNQIALEQAAPYAAEDADVTLRLHEV 494 Query: 175 LEPLSSKEQELWY-----------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P L + I G + + + L+ + Sbjct: 495 LSPKLKAVPRLHQLYAELEVPLVAVLSRIERNGAYISRQSLADHSHELAGRLESLEARAQ 554 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 L + ++L LF + GL + T +T + VL + P + Sbjct: 555 ELAGQA-FNLGSPKQLGEILFDKLGLPVIKKTPKGAPSTAEEVLLELAEDYPLPSVLMEY 613 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L E ++ D T + TGR S QN+P + Sbjct: 614 R-SLSKLKSTYTDRLPEVIDPDTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRR- 671 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A EG++++ AD + IE R++A ++ + L Sbjct: 672 ------------------------IRQAFVAPEGRRILAADYSQIELRIMAHLSRDAGLL 707 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G D++ T A F V VT DQR K + G++ Sbjct: 708 RAFSEGLDVHSATAAEVFGVELNDVTVDQRRKAKAINF--------------GLIYGMS- 752 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + ++ V++ Sbjct: 753 -----------------------------AFGLARQLHIGRGEAQEYIERYFSRYPGVAD 783 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + GR L ++ Sbjct: 784 YMARTRAEAHE--------------------------RGYVETHFGRRLQLPEINAKN-- 815 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633 R +Q + DI+ + M+ +++ VHDE+V Sbjct: 816 -KQRQLAAERTAINAP------MQGTAADIIKKAMIAVDAWLQDSSLDALLIMQVHDELV 868 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E +T S L LM A +PL E + Sbjct: 869 FEVAETAVAQLSEALPSLMADVA--ALEVPLLVEAGVGANW 907 >gi|167010003|ref|ZP_02274934.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200] Length = 897 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 107/702 (15%), Positives = 212/702 (30%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S A + ++ +F + H + Sbjct: 323 AFDTETDSLN----------AYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVL 372 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK ++ VAHN F+ VL ++I + T+++A Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDMDSL 430 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + K G E IA + + + + +Y D +T +F Sbjct: 431 S------KEHLGIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH 480 Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223 + L +++ L+ L + G +D + ++ +L+ + Sbjct: 481 FKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCY 540 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 +L + +L+ LF + GL T +T + VL + A + Sbjct: 541 NLAGQ-EFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKY 599 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L + ++++GR+ + G + TGR S QN+P S + Sbjct: 600 RH-LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 656 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA +G +V AD + IE R++A ++ ++ L Sbjct: 657 ------------------------IREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLL 692 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 K F D++ T A ++ +V+ +QR K + G++ Sbjct: 693 KVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAIN--------------FGLIYGMSA 738 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A ++ + + ++ V E Sbjct: 739 FGLARQLEI------------------------------PRAEAQEYIDIYFNRYPSVKE 768 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + +Q N + GR L ++ + Sbjct: 769 YMTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVM 802 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632 R +Q + DI+ + M+N + +V+ VHDE+ Sbjct: 803 QRNA---AERAAINAP------MQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDEL 853 Query: 633 VCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E E + + +M + +PL+ K + Sbjct: 854 VFEVKKTKLEEIVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893 >gi|163739304|ref|ZP_02146715.1| DNA polymerase I [Phaeobacter gallaeciensis BS107] gi|161387374|gb|EDQ11732.1| DNA polymerase I [Phaeobacter gallaeciensis BS107] Length = 937 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 94/715 (13%), Positives = 194/715 (27%), Gaps = 178/715 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 + +D ET ++ ++ + + H Sbjct: 352 VAVDTETTGFDEMVV----------DLVGISLCVEPGRACYIPLTHKSGSSDDLFGSDDL 401 Query: 51 -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 +LK LE+ + + N ++ + I + T++++ + Sbjct: 402 ADGQMPLQDALDLLKPVLEDNSILKIGQNMKYDAKIFAR---RGIDVAPIDDTMLMSYAM 458 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + E L + R Y Sbjct: 459 HAGQHGHGMDTLSERY------------LNHTPIPIKPLLGTGKSAITFDRVPIDDAVAY 506 Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T +++ +P + E+ L + + G VD ++ Sbjct: 507 AAEDADITLRLWQLFKPQLHQSGVTTVYETLERPLVPVLARMEREGIKVDRDTLSRMSNA 566 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266 + L+ E+ L + ++L LF + G+ +T T +L Sbjct: 567 FAQKMAGLEAEIHELAGQ-NFNVGSPKQLGEILFDKLGMEGGKKGKTGAYATGADILEDL 625 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFP 325 V + R S+ + L + +N GR+ + GA+ TGR + Sbjct: 626 ATEHALPGLVLDWRQ-LSKLKSTYTDALQDHINAETGRVHTSYVQTGAN-TGRLASTDPN 683 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S +R + EG L+ D + IE Sbjct: 684 LQNIPIRSEEGRR-------------------------IREAFVPEEGNVLLALDYSQIE 718 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +AG +AF G+D++ T + FNV ++T D R K + Sbjct: 719 LRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLEEMTSDIRRQAKAIN--------- 769 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ A + Sbjct: 770 -----FGVIYGIS------------------------------GFGLARNLRIPRAEAQG 794 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + ++ + +E ++ + + G Sbjct: 795 FIDRYFERFPGIRRYMDETVAFAKE--------------------------HGHVQTLFG 828 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621 R + ++ S R +Q + D++ M+ Sbjct: 829 RKIHTPEI----SAKGPRAGFAKRAAINAP------IQGTAADVIRRAMIRMPAAIAHLP 878 Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673 ++L VHDE++ E P+ E +M + A + L + + + Sbjct: 879 ARMLLQVHDELLFEVPEAAVEDTIETASQVMETAADPAVHLDVKLVVDAGRGQNW 933 >gi|184156936|ref|YP_001845275.1| DNA polymerase I [Acinetobacter baumannii ACICU] gi|332873987|ref|ZP_08441922.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059] gi|183208530|gb|ACC55928.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Acinetobacter baumannii ACICU] gi|322506832|gb|ADX02286.1| DNA polymerase I [Acinetobacter baumannii 1656-2] gi|323516701|gb|ADX91082.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715] gi|332737728|gb|EGJ68620.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059] Length = 923 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 195/705 (27%), Gaps = 167/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 ID ET S ++ F+ FD H Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRE 398 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + +K LEN V + H+ ++ + +++ + +++ + Sbjct: 399 QVLAQIKPILENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 456 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V L E + K ++ + Y D VT Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217 +++ L EL + I G +D A L+ Sbjct: 505 YRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMED 564 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+ + + + +++ LF + G+ T +T + VL P Sbjct: 565 LENQAMEIAG-ETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLT 621 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + +R ++ + L+E ++D T + TGR S QN+P Sbjct: 622 EIILEHR-GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + I +R IA EG+ L+ AD + IE R++A + Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + + AF+ G+D++ T A +A VT DQR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ F + K + Q+ Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTREESQNYIKQYFQR 791 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + E Q + GR L D+ Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629 + + R Q + DI+ M+ K ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + +M S +PL E + K + Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919 >gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022] gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022] Length = 897 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 107/702 (15%), Positives = 212/702 (30%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 323 AFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVL 372 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK ++ VAHN F+ VL ++I + T+++A Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDMDSL 430 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + K G E IA + + + + +Y D +T +F Sbjct: 431 S------KEHLGIEPIAY----TVIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH 480 Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223 + L +++ L+ L + G +D + ++ +L+ + Sbjct: 481 FKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCY 540 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 +L + +L+ LF + GL T +T + VL + A + Sbjct: 541 NLAGQ-EFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKY 599 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L + ++++GR+ + G + TGR S QN+P S + Sbjct: 600 RH-LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 656 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA +G +V AD + IE R++A ++ ++ L Sbjct: 657 ------------------------IREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLL 692 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 KAF D++ T A ++ +V+ +QR K + G++ Sbjct: 693 KAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAIN--------------FGLIYGMSA 738 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A ++ + + ++ V E Sbjct: 739 FGLARQLEI------------------------------PRAEAQEYIDIYFNRYPSVKE 768 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + +Q N + GR L ++ + Sbjct: 769 YMTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVM 802 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632 R +Q + DI+ + M+N + +V+ VHDE+ Sbjct: 803 QRNA---AERAAINAP------MQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDEL 853 Query: 633 VCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E E + + +M + +PL+ K + Sbjct: 854 VFEVKKTKLEEIVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893 >gi|193076392|gb|ABO11061.2| DNA polymerase I [Acinetobacter baumannii ATCC 17978] Length = 923 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 195/705 (27%), Gaps = 167/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 ID ET S ++ F+ FD H Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYIPLAHNYENAPQQLNRE 398 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + +K LEN V + H+ ++ + +++ + +++ + Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 456 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V L E + K ++ + Y D VT Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217 +++ L EL + I G +D A L+ Sbjct: 505 YRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMED 564 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+ + + + +++ LF + G+ T +T + VL P Sbjct: 565 LENQAMEIAG-ETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLT 621 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + +R ++ + L+E ++D T + TGR S QN+P Sbjct: 622 EIILEHR-GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + I +R IA EG+ L+ AD + IE R++A + Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + + AF+ G+D++ T A +A VT DQR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ F + K + Q+ Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTREESQNYIKQYFQR 791 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + E Q + GR L D+ Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629 + + R Q + DI+ M+ K ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + +M S +PL E + K + Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919 >gi|260556039|ref|ZP_05828258.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606] gi|260410094|gb|EEX03393.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606] Length = 923 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 195/705 (27%), Gaps = 167/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 ID ET S ++ F+ FD H Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYIPLAHNYENAPQQLNRE 398 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + +K LEN V + H+ ++ + +++ + +++ + Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 456 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V L E + K ++ + Y D VT Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217 +++ L EL + I G +D A L+ Sbjct: 505 YRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMED 564 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+ + + + +++ LF + G+ T +T + VL P Sbjct: 565 LENQAMEIAG-ETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLT 621 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + +R ++ + L+E ++D T + TGR S QN+P Sbjct: 622 EIILEHR-GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + I +R IA EG+ L+ AD + IE R++A + Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + + AF+ G+D++ T A +A VT DQR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ F + K + Q+ Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTREESQNYIKQYFQR 791 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + E Q + GR L D+ Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629 + + R Q + DI+ M+ K ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + +M S +PL E + K + Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919 >gi|85706952|ref|ZP_01038042.1| DNA polymerase I [Roseovarius sp. 217] gi|85668563|gb|EAQ23434.1| DNA polymerase I [Roseovarius sp. 217] Length = 936 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 102/716 (14%), Positives = 202/716 (28%), Gaps = 178/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51 + +D ET S ++ ++ + H Sbjct: 350 YVAVDTETTSLNEM----------QADLVGISLAIAPGRACYIPLTHKDGAADDLFGSDK 399 Query: 52 ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 LK LE+ + + N ++ + A I + T++++ + Sbjct: 400 MAEGQMPVADALAALKPVLEDHAILKIGQNMKYDAKIFAA---RGITVEPIDDTMLMSYA 456 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + A+ E K L+ R + Sbjct: 457 LHAGLHGHGMDALSERY--LMHTPIPIKSLL----------GSGKTAVTFDRVPVDEAVK 504 Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T ++ +P + E+ L + + G VD A ++ Sbjct: 505 YAAEDADITLRLWLTFKPQLHRARVTTVYETLERPLVPVLAQMERYGVKVDRATLRAMSG 564 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265 + L+ E+ L + ++L LF E GL + +T T VL Sbjct: 565 KFAQKMAALESEIHELAG-RSFNVGSPKQLGEILFDEMGLSGGEKGKTGAYATGADVLED 623 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVF 324 +V + R S+ + L + ++ D GR+ + GA+ TGR + Sbjct: 624 LATEHELPARVLDWRQ-LSKLKSTYTDALQDHIDPDTGRVHTSYVQAGAN-TGRLASTDP 681 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P S +R +A+ G +LV D + I Sbjct: 682 NLQNIPVRSEEGRR-------------------------IREAFVAASGHRLVSLDYSQI 716 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA +A + +AF G D++ T + FNV Q+T + R K + Sbjct: 717 ELRILAHVAEIETLKQAFREGHDIHAMTASEMFNVPLDQMTPEIRRQAKAIN-------- 768 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 G++ A + + Sbjct: 769 ------FGVIYGIS------------------------------GFGLARNLRIPRSEAQ 792 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + ++ + + + ++ + + Sbjct: 793 GFIDRYFERFPGIKDYMDATVAFAKE--------------------------HGYVQTLF 826 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKA 620 GR + ++ S R +Q + DI+ M+ Sbjct: 827 GRKIHTPEI----SAKGPRAGFARRAAINAP------IQGSAADIIRRAMIRMPDAIEGL 876 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEGYESKRY 673 ++L VHDE++ E + + +M S A +PL + + + Sbjct: 877 PCKMLLQVHDELIFEVAEEATDRLIEIARDVMQGAASPAVHLDVPLVVDAGQGVNW 932 >gi|239500679|ref|ZP_04659989.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB900] Length = 923 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 195/705 (27%), Gaps = 167/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 ID ET S ++ F+ FD H Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRE 398 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + +K LEN V + H+ ++ + +++ + +++ + Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 456 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V L E + K ++ + Y D VT Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217 +++ L EL + I G +D A L+ Sbjct: 505 YRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMED 564 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+ + + + +++ LF + G+ T +T + VL P Sbjct: 565 LENQAMEIAG-ETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLT 621 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + +R ++ + L+E ++D T + TGR S QN+P Sbjct: 622 EIILEHR-GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + I +R IA EG+ L+ AD + IE R++A + Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + + AF+ G+D++ T A +A VT DQR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ F + K + Q+ Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTREESQNYIKQYFQR 791 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + E Q + GR L D+ Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629 + + R Q + DI+ M+ K ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + +M S +PL E + K + Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919 >gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7] Length = 921 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 97/698 (13%), Positives = 193/698 (27%), Gaps = 160/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEA 60 D ET L ++ +F ++ + + + A Sbjct: 351 AFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEAAKVVERFSPA 400 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 L+N + N F+ VL+ N+ + T++ + + E Sbjct: 401 LQNPKSLKIGQNIKFDILVLRKY-NVKVA-GPLFDTMIAHYLLNPELRHGMDYLAETY-- 456 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 + +ELI EY D VT ++ P Sbjct: 457 LKYQTVHIEELIG---------PKGKNQLSMRNVPVEQIAEYAAEDADVTLKLKNYFAPE 507 Query: 179 SS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E L Y+ + G +D + + KL+QE+ L Sbjct: 508 LKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEVYELAGT 567 Query: 229 LVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + +++ LF L + T+ +T + VL + P ++ R Sbjct: 568 -EFNINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLLEYR-GL 625 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + ++ L E +N T + TGR S QN+P E Sbjct: 626 KKLLSTYIDALPELINPQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGRE----- 680 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R I AD + IE R++A ++G+ ++AF Sbjct: 681 --------------------IRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIEAF 720 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 ++G D++ T A+ + + +VT D R K G+++ Sbjct: 721 QSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANF--------------GIIYGISVFGL 766 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + + + + + R+ E Sbjct: 767 AER------------------------------LGIPRSESKELIDGYFSTYPRIKEYME 796 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 E + ++ + R D+ ++ + + Sbjct: 797 ESIKVAKE--------------------------KGYVETIFKRKRFLPDINSHNAVVRG 830 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 R +Q + DI+ M+ + ++L VHDE+ Sbjct: 831 Y---AERNAINAP------IQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNV 881 Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PL A+ E + + Sbjct: 882 YKEEAEEVKKIVLEEMENVMK--LQVPLIADCGEGENW 917 >gi|301629258|ref|XP_002943761.1| PREDICTED: DNA polymerase I-like [Xenopus (Silurana) tropicalis] Length = 931 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 104/708 (14%), Positives = 210/708 (29%), Gaps = 167/708 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 + +D ET + + ++ +F H+ Sbjct: 355 DLVALDTETSALDAMR----------AQIVGLSFSVQPGEAAYIPLRHEGPDAPVQLPLE 404 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSAL 109 + LK LE+ + + ++R V +++ + T++ + + P L Sbjct: 405 QVLARLKPWLEDARHAKLGQHIKYDRHVFANH-GIEVRGY-VHDTMLQSYVLEVHKPHNL 462 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 ++ E E P + + Y D T Sbjct: 463 ASLAERH------------TGRTGLNYEDLCGKGVHQIPFAQVSVDKAATYACEDSDQTL 510 Query: 170 EIFKRLEPLS---SKEQELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLD 219 E+ + L PL + + ++ L+ + G +D AL + + +L+ Sbjct: 511 EVHQTLWPLLQANERLRAIYELEMHSSEALFRMERNGVLIDAALLAQQSHALGQRILRLE 570 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQ 275 E + + ++L F + G+ + T +T + VL P + Sbjct: 571 TEAYEIAGQP-FNLNSPKQLGEIFFDKLGMPVVRKTTTGARSTNEEVLEKLAADYPLPAR 629 Query: 276 VFNNRMRASRSAVLKLNTL-VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R S+ + L + A+ GR+ A TGR S QN+P + Sbjct: 630 LLEHR-SLSKLKSTYTDKLGLLALPRTGRVHTHYAQAVA-VTGRLSSSDPNLQNIPVRTP 687 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R +A G+ + AD + IE R++A ++G Sbjct: 688 EGRR-------------------------IREAFVAPPGRVIASADYSQIELRIMAHISG 722 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L AF G D++ T A F V ++V+ +QR KV+ Sbjct: 723 DPSLLHAFHHGLDVHRATAAEVFGVPVSEVSSEQRRYAKVIN--------------FGLI 768 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ A A + + + +++ Sbjct: 769 YGMSSFGL------------------------------AKNLGLDRQAAKNYIQRYFERY 798 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + E + + GR L+ ++ Sbjct: 799 PGVRQYMEETKARAKS--------------------------LGYVETVFGRRLMLPEIN 832 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTV 628 + + +Q + D++ + M+ K +++ V Sbjct: 833 SPNGPRRAAAERA---------AINAPMQGTAADLIKKAMVAVQARLDAEKPEILMIMQV 883 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 HDE+V E P+ + + LM A +PL AE + K Sbjct: 884 HDELVFELPENAVDWLRAEVPRLMAGVA--ALRVPLLAEVGVGGNWDK 929 >gi|85060213|ref|YP_455915.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans'] gi|84780733|dbj|BAE75510.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans'] Length = 927 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 108/705 (15%), Positives = 202/705 (28%), Gaps = 169/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54 D ET LT +I F HD + Sbjct: 352 AFDTETDGLDTLT----------ANLIGLCFAVKPGEAAYLPVGHDYLDAPDQLDRATVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL---PSALK 110 LK +E+ + + N F+R VLK DI + T++ + + Sbjct: 402 AALKPVMEDPTIGKIGQNLKFDRGVLKRY---DIELAGIAFDTMLESYVLDSVAGRHDMD 458 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 ++ E L E ++ A Y D VT Sbjct: 459 SLAERF------------LQHTTVSFEEIAGKGRNQLTFNQIAMEQAASYAAEDADVTLR 506 Query: 171 IFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + ++L P + E L + I G +D ++ + + +L+ Sbjct: 507 LHQKLWPRIEQAPELRRVFEEIEMPLVPVLSRIERTGVLIDESILAAHSVELAKRLEELE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 E L + ++L+ L+ + L + T +T + VL+ P Sbjct: 567 GEAHQL-AEEPFNLSSTKQLQEILYDKQKLPVLKKTPGGAPSTNEEVLAELALDYPLPKL 625 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R ++ + L + +N + T + TGR S QN+P + Sbjct: 626 ILEYR-GLAKLKSTYTDKLPQMINPLSKRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDE 684 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA +V AD + IE R++A +A + Sbjct: 685 GRR-------------------------IRQAFIAPPDALIVAADYSQIELRIMAHLARD 719 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF G+D++ T A F ++ +VT+DQR K + Sbjct: 720 PGLLNAFAAGKDIHRATAAEVFGMSLEKVTQDQRRSAKAINF--------------GLIY 765 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + ++ + +++ Sbjct: 766 GMS------------------------------AFGLARQLSVPRSEAQKYMNLYFERYP 795 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V E + + + GR L D+ + Sbjct: 796 GVLEYMERTRRQA--------------------------SDRGYVETLDGRRLYLLDIHS 829 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629 + + R +Q S DI+ M+ +++ VH Sbjct: 830 RNGMRK---KGVERAAINAP------MQGTSADIIKRAMIAIDGWLQQEAPPVRMIMQVH 880 Query: 630 DEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E +A + LM +PL+ + + + Sbjct: 881 DELVFEVQRDAVESAKARIKALMEGCFK--LDVPLQVDVGVGENW 923 >gi|9633592|ref|NP_051006.1| P45 [Acyrthosiphon pisum bacteriophage APSE-1] gi|9910664|sp|Q9T1Q3|DPOL_BPAPS RecName: Full=Probable DNA polymerase; AltName: Full=P45 gi|6118040|gb|AAF03988.1|AF157835_45 P45 [Endosymbiont phage APSE-1] Length = 993 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 215/613 (35%), Positives = 325/613 (53%), Gaps = 26/613 (4%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 LF D ET S I + CG +YAE+ ++LFA+ ++ PV++WD D MP LK L++ Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYLDD 63 Query: 64 TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL--SS 120 +++ V HN F+ +LK N+D+P+ R TLV A ++GLP AL + + + Sbjct: 64 SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123 Query: 121 QKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K +EGK LI+ CK R H E W+ F +Y D+ REI++ L + Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E W LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + Sbjct: 184 MNVHETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T QR ++ + P ++ + R+++ ++ K L+++ Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRIND-PDIPPALRELLSVRLQSCTTSTSKYKALLKS 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 +++DGRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L D Sbjct: 303 VSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDD 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YV 410 +Q+ S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+ AF ++ Y Sbjct: 363 IMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YAR+FN+ P VTK+QR IGKVMEL LGY GG AF A GL+L+ A N Sbjct: 423 LAYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 P +A + + E + + + T C+ +K+ WR H + W ++ A +Q Sbjct: 483 PPGVKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQ 541 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR---SYLNT--TTR 585 I++ ++ + +++DK+ L + LPSGRSL Y +Y+ T +R Sbjct: 542 AIQSPGIAFKCRK-----LSVRRDKSWLRICLPSGRSLCYPSARIENGQITYMGTNPYSR 596 Query: 586 QLTREYTYGGKLT 598 + R TYGGK Sbjct: 597 KWERLKTYGGKSC 609 Score = 97.5 bits (241), Expect = 8e-18, Method: Composition-based stats. Identities = 44/78 (56%), Positives = 54/78 (69%) Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657 ENI QA +RD+LA M KAGY+IVLTVHDEI+ E PDT +F+A L L++ N W Sbjct: 915 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 974 Query: 658 AKGLPLKAEGYESKRYRK 675 A LPL A G+E+ RYRK Sbjct: 975 AWDLPLSANGFETYRYRK 992 >gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS] gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis WY96-3418] gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica FTNF002-00] gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257] gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1] gi|295312618|ref|ZP_06803370.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1] gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS] gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp. tularensis WY96-3418] gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257] gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp. holarctica FTNF002-00] Length = 897 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 106/702 (15%), Positives = 211/702 (30%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 323 AFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVL 372 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK ++ VAHN F+ VL ++I + T+++A Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDMDSL 430 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + K G E IA + + + + +Y D +T +F Sbjct: 431 S------KEHLGIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH 480 Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223 + L +++ L+ L + G +D + ++ +L+ + Sbjct: 481 FKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCY 540 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 +L + +L+ LF + GL T +T + VL + A + Sbjct: 541 NLAGQ-EFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKY 599 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L + ++++GR+ + G + TGR S QN+P S + Sbjct: 600 RH-LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 656 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA +G +V AD + IE R++A ++ ++ L Sbjct: 657 ------------------------IREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLL 692 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 K F D++ T A ++ +V+ +QR K + G++ Sbjct: 693 KVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAIN--------------FGLIYGMSA 738 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A ++ + + ++ V E Sbjct: 739 FGLARQLEI------------------------------PRAEAQEYIDIYFNRYPSVKE 768 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + +Q N + GR L ++ + Sbjct: 769 YMTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVM 802 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632 R +Q + DI+ + M+N + +V+ VHDE+ Sbjct: 803 QRNA---AERAAINAP------MQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDEL 853 Query: 633 VCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E E + + +M + +PL+ K + Sbjct: 854 VFEVKKTKLEEIVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893 >gi|169797137|ref|YP_001714930.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii AYE] gi|215484600|ref|YP_002326835.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294] gi|301510197|ref|ZP_07235434.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB058] gi|332856876|ref|ZP_08436285.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150] gi|332867222|ref|ZP_08437487.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113] gi|169150064|emb|CAM87958.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii AYE] gi|213987981|gb|ACJ58280.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294] gi|332726930|gb|EGJ58435.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150] gi|332734161|gb|EGJ65293.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113] Length = 923 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 195/705 (27%), Gaps = 167/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 ID ET S ++ F+ FD H Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRE 398 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + +K LEN V + H+ ++ + +++ + +++ + Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 456 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V L E + K ++ + Y D VT Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217 +++ L EL + I G +D A L+ Sbjct: 505 YRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMED 564 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+ + + + +++ LF + G+ T +T + VL P Sbjct: 565 LENQAMEIAG-ETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLT 621 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + +R ++ + L+E ++D T + TGR S QN+P Sbjct: 622 EIILEHR-GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + I +R IA EG+ L+ AD + IE R++A + Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + + AF+ G+D++ T A +A VT DQR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ F + K + Q+ Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTREESQNYIKQYFQR 791 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + E Q + GR L D+ Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629 + + R Q + DI+ M+ K ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + +M S +PL E + K + Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919 >gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B] gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B] Length = 921 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 96/698 (13%), Positives = 193/698 (27%), Gaps = 160/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEA 60 D ET L ++ +F ++ + + + A Sbjct: 351 AFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEAAKVVERFSPA 400 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 L+N + N F+ VL+ N+ + T++ + + E Sbjct: 401 LQNPKSLKIGQNIKFDILVLRKY-NVKVA-GPLFDTMIAHYLLNPELRHGMDYLAETY-- 456 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 + +ELI EY D +T ++ P Sbjct: 457 LKYQTVHIEELIG---------PKGKNQLSMRNVPVEQIAEYAAEDADITLKLKNYFAPE 507 Query: 179 SS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E L Y+ + G +D + + KL+QE+ L Sbjct: 508 LKKEGLESLFTTIEMPLIYVLAEMEATGVTLDTVALRQSSGELTASMNKLEQEVYELAGT 567 Query: 229 LVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + +++ LF L + T+ +T + VL + P ++ R Sbjct: 568 -EFNINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLLEYR-GL 625 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + ++ L E +N T + TGR S QN+P E Sbjct: 626 KKLLSTYIDALPELINPQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGRE----- 680 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R I AD + IE R++A ++G+ ++AF Sbjct: 681 --------------------IRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIEAF 720 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 ++G D++ T A+ + + +VT D R K G+++ Sbjct: 721 QSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANF--------------GIIYGISVFGL 766 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + + + + + R+ E Sbjct: 767 AER------------------------------LGIPRSESKELIDGYFSTYPRIKEYME 796 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 E + ++ + R D+ ++ + + Sbjct: 797 ESIKVAKE--------------------------KGYVETIFKRKRFLPDINSHNAVVRG 830 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 R +Q + DI+ M+ + ++L VHDE+ Sbjct: 831 Y---AERNAINAP------IQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNV 881 Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PL A+ E + + Sbjct: 882 YKEEAEEVKKIVLEEMENVMK--LQVPLIADCGEGENW 917 >gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4] gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198] gi|224456350|ref|ZP_03664823.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033] gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4] gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198] gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033] gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis NE061598] Length = 897 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 106/702 (15%), Positives = 211/702 (30%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 323 AFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVL 372 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK ++ VAHN F+ VL ++I + T+++A Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDMDSL 430 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + K G E IA + + + + +Y D +T +F Sbjct: 431 S------KEHLGIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH 480 Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223 + L +++ L+ L + G +D + ++ +L+ + Sbjct: 481 FKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCY 540 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 +L + +L+ LF + GL T +T + VL + A + Sbjct: 541 NLAGQ-EFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKY 599 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L + ++++GR+ + G + TGR S QN+P S + Sbjct: 600 RH-LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 656 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA +G +V AD + IE R++A ++ ++ L Sbjct: 657 ------------------------IREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLL 692 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 K F D++ T A ++ +V+ +QR K + G++ Sbjct: 693 KVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAIN--------------FGLIYGMSA 738 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A ++ + + ++ V E Sbjct: 739 FGLARQLEI------------------------------PRAEAQEYIDIYFNRYPSVKE 768 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + +Q N + GR L ++ + Sbjct: 769 YMTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVM 802 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632 R +Q + DI+ + M+N + +V+ VHDE+ Sbjct: 803 QRNA---AERAAINAP------MQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDEL 853 Query: 633 VCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E E + + +M + +PL+ K + Sbjct: 854 VFEVKKTKLEEIVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893 >gi|254880993|ref|ZP_05253703.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA] gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A] gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA] gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A] Length = 971 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 95/701 (13%), Positives = 208/701 (29%), Gaps = 160/701 (22%) Query: 2 ATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQV 56 + +D ET +T ++ +F + ++ D + Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRAEAQKIVNE 447 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE 114 + A E V V N ++ VL ++ T+V + + E Sbjct: 448 FRPAFEKEGVLKVGQNIKYDMLVLGNY-GTEVR-GPLFDTMVAHYVLQPELRHNMDYLAE 505 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + +ELI K + +Y D VT ++ Sbjct: 506 IYLH--YQTIHIEELIG---------PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNI 554 Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 LE E L + + G VD ++ ++++E+ Sbjct: 555 LEQELKTNDAEKLFYEIEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQ 614 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L + +++ LF + + T+T T + VL S + ++ + Sbjct: 615 LAGTD-FNIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEH 673 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + ++ L +N + T + TGR S QN+P + +E Sbjct: 674 R-GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKE- 731 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I +G + AD + IE R++A ++G+ + Sbjct: 732 ------------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMI 767 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ G+D++ T A+ + ++ +VT++QR+ K + G+++ Sbjct: 768 EAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGII--------------YGISV 813 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + + + ++ E Sbjct: 814 FGLAERMNVD------------------------------RKEAKELIDGYFETYPQIKE 843 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR D+ + S Sbjct: 844 YMDKSIDLAR--------------------------GQGYIETIFGRKRYLPDINSRNSV 877 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + R +Q + DI+ M+ + ++L VHDE+ Sbjct: 878 VRGY---AERNAINAP------IQGGAADIIKVAMVRIYQRFQSESIKSKMILQVHDELN 928 Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + M + + +PL+A+ + Sbjct: 929 FSVLPEEKEKVQKIVIEEMENA--YRMQVPLRADCGWGSNW 967 >gi|258623132|ref|ZP_05718144.1| DNA polymerase I [Vibrio mimicus VM573] gi|258584615|gb|EEW09352.1| DNA polymerase I [Vibrio mimicus VM573] Length = 938 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 104/703 (14%), Positives = 204/703 (29%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + HD + Sbjct: 362 AFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDRDWVI 411 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 412 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 469 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ + +Y D VT + + Sbjct: 470 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQ 519 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G +D L +Q + + +L+++ Sbjct: 520 RISPLIEQDSKLAQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEKKA 579 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 580 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 638 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N + T + TGR S QN+P + Sbjct: 639 YR-GLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 697 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 698 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 732 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 733 LDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GLIYGMS 778 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 779 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 808 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + + GR L ++ + + Sbjct: 809 QYMEDTRSRAAE--------------------------LGYVETIFGRRLHLPEITSRNA 842 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 843 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDE 893 Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V + S + LM S A +PL AE + Sbjct: 894 LVFEVEESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 934 >gi|260551921|ref|ZP_05825783.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624] gi|260405324|gb|EEW98819.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624] Length = 923 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 108/705 (15%), Positives = 196/705 (27%), Gaps = 167/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 ID ET S ++ F+ FD H Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRE 398 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + +K LEN V + H+ ++ + +++ + +++ + Sbjct: 399 QILAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 456 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V L E + K ++ + Y D VT Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217 +++ L EL + I G +D A L+ Sbjct: 505 YRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEG 564 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+ + + + +++ LF + G+ T +T + VL P A Sbjct: 565 LENQAMEI-ADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLA 621 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + +R ++ + LVE ++D T + TGR S QN+P Sbjct: 622 EIILEHR-GLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + I +R IA EG+ L+ AD + IE R++A + Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + + AF+ G+D++ T A +A VT DQR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ F + K + Q+ Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTRQESQNYIKQYFQR 791 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + E Q + GR L D+ Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629 + + R Q + DI+ M+ K ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIAVDKILPKDQAKLLLQVH 876 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + +M S +PL E + + + Sbjct: 877 DELVFEADQNIAEELSKQIASVMESVVE--ISVPLVVEVGQGQNW 919 >gi|258626622|ref|ZP_05721452.1| DNA polymerase I [Vibrio mimicus VM603] gi|258581126|gb|EEW06045.1| DNA polymerase I [Vibrio mimicus VM603] Length = 938 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 104/703 (14%), Positives = 204/703 (29%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + HD + Sbjct: 362 AFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDREWVI 411 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 412 TQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 469 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ + +Y D VT + + Sbjct: 470 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQ 519 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G +D L +Q + + +L+++ Sbjct: 520 RISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEKKA 579 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 580 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 638 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N + T + TGR S QN+P + Sbjct: 639 YR-GLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 697 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 698 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 732 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 733 LDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GLIYGMS 778 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 779 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 808 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + + GR L ++ + + Sbjct: 809 QYMEDTRSRAAE--------------------------LGYVETIFGRRLHLPEITSRNA 842 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 843 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDE 893 Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V + S + LM S A +PL AE + Sbjct: 894 LVFEVEESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 934 >gi|157373237|ref|YP_001471837.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157315611|gb|ABV34709.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 933 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 104/706 (14%), Positives = 208/706 (29%), Gaps = 170/706 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54 +D ET S Y E ++ +F + HD Sbjct: 357 AVDTETTSLN---------YME-AKLVGLSFAVEAGKAAYLPLAHDYLDAPQQLNQAEAL 406 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LEN ++ V N ++ ++L + + T++ + + Sbjct: 407 AKLKPLLENPEIKKVGQNLKYDMSILAN-VGIKLQGIA-FDTMLESYVFNSVASKHNMDD 464 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + G + I+ E + ++ + + Y D +T + Sbjct: 465 LALKY--------LGHKNISF----EEIAGKGAKQLTFNQISLEVAAPYAAEDADITLRL 512 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E L + + +G +D L ++ + +L+Q Sbjct: 513 HQHLWPRLQKEPELASIFTEIELPLVQVLSDMERQGVLIDSMLLGQQSEELARTIDELEQ 572 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+ F + G + T +T + VL P + Sbjct: 573 KAYEIAG-ESFNLSSPKQLQVLFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPLPKII 631 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 +R ++ + L +N+ GR+ + A+ TGR S QN+P + Sbjct: 632 LQHR-SLAKLKSTYTDKLPLMVNAQTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEE 689 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA EG+K++ AD + IE R++A ++ + Sbjct: 690 GRR-------------------------IRHAFIAREGRKVLAADYSQIELRIMAHLSQD 724 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF G+D++ T A F+V +VT +QR K + Sbjct: 725 KGLLTAFAEGKDIHKATAAEVFDVDFTEVTTEQRRRAKAVN--------------FGLIY 770 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + ++ + +++ Sbjct: 771 GMSAFGLARQLDI------------------------------PRGEAQKYIDTYFKRYP 800 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V E + + GR L + + Sbjct: 801 GVLNYMEETRAIA--------------------------ADLGYVSTLYGRRLYLPAIKD 834 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-------IVLTV 628 + R +Q + DI+ + M+N + +++ V Sbjct: 835 RNAMRRQA---AERAAINAP------MQGTAADIIKKAMINVADWIANETDGEITLIMQV 885 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E + LM + L AE + Sbjct: 886 HDELVFEVDSDKAEALQEKVCQLMAEAAD--LDVELLAEAGLGDNW 929 >gi|163742064|ref|ZP_02149453.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10] gi|161384785|gb|EDQ09165.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10] Length = 937 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 94/715 (13%), Positives = 194/715 (27%), Gaps = 178/715 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 + +D ET ++ ++ + + H Sbjct: 352 VAVDTETTGFDEMVV----------DLVGISLCVEPGSACYIPLTHKSGSSDDLFGSDDL 401 Query: 51 -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 +LK LE+ + + N ++ + I + T++++ + Sbjct: 402 ADGQMPLQDALNLLKPVLEDNSILKIGQNMKYDAKIFAR---RGIDVAPIDDTMLMSYAM 458 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + E L + R Y Sbjct: 459 HAGQHGHGMDTLSERY------------LNHTPIPIKPLLGTGKSAITFDRVPIDDAVAY 506 Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T +++ +P + E+ L + + G VD ++ Sbjct: 507 AAEDADITLRLWQLFKPQLHQSGVTTVYETLERPLVPVLARMEREGIKVDRDTLSRMSNA 566 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266 + L+ E+ L + ++L LF + G+ +T T +L Sbjct: 567 FAQKMAGLEAEIHELAGQ-NFNVGSPKQLGEILFDKLGMEGGKKGKTGAYATGADILEDL 625 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFP 325 V + R S+ + L + +N GR+ + GA+ TGR + Sbjct: 626 ATEHALPGLVLDWRQ-LSKLKSTYTDALQDHINAETGRVHTSYVQTGAN-TGRLASTDPN 683 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S +R + EG L+ D + IE Sbjct: 684 LQNIPIRSEEGRR-------------------------IREAFVPEEGNVLLALDYSQIE 718 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +AG +AF G+D++ T + FNV ++T D R K + Sbjct: 719 LRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLEEMTSDIRRQAKAIN--------- 769 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ A + Sbjct: 770 -----FGVIYGIS------------------------------GFGLARNLRIPRAEAQG 794 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + ++ + +E ++ + + G Sbjct: 795 FIDRYFERFPGIRRYMDETVAFAKE--------------------------HGHVQTLFG 828 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621 R + ++ S R +Q + D++ M+ Sbjct: 829 RKIHTPEI----SAKGPRAGFAKRAAINAP------IQGTAADVIRRAMIRMPAAIAHLP 878 Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673 ++L VHDE++ E P+ E +M + A + L + + + Sbjct: 879 ARMLLQVHDELLFEVPEAAVEDTIETARQVMETAADPAVHLDVKLVVDAGRGQNW 933 >gi|12229815|sp|Q9S1G2|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum] Length = 1016 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 108/725 (14%), Positives = 210/725 (28%), Gaps = 185/725 (25%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV---------ELWDCVHDP--- 51 + D ET S A ++ F+ D+ VH Sbjct: 418 VAFDTETTSLD----------AMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVG 467 Query: 52 ---------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 LK LE+ V VA N ++ +LK I + T Sbjct: 468 DLLGGGLADNQIPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDT 524 Query: 97 LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 ++++ + + E G I + N Sbjct: 525 MLISYVLDAGTGAHGMDPLSEKF--------LGHTPIPY----KDVAGSGKANVTFDLVD 572 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVAL 203 Y D VT ++ L+P E+ L + + RG VD + Sbjct: 573 IDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQI 632 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTC 259 L+ + +L+ E+ L + ++L LF + GL T+ +T Sbjct: 633 LSRLSGELAQGAARLEDEIYVLAG-ERFNIGSPKQLGDILFGKMGLSGGSKTKTGQWSTS 691 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 +VL + + + + ++ + L ++ + + T L ++ TGR Sbjct: 692 AQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRL 751 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+P + + +R+ I++ G KL+ A Sbjct: 752 SSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHKLISA 786 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA +A KAFE G D++ T + F V + + R K + + Sbjct: 787 DYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGI 846 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 G++ A+ + Sbjct: 847 I--------------YGISAFGLANQLSIE------------------------------ 862 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + K + ++ + + Sbjct: 863 RSEAGDYIKKYFERFPGIRDYMESRKAMARD--------------------------KGY 896 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + GR + Y ++ ++ + R +Q + D++ M+ Sbjct: 897 VETIFGRRINYPEIRSSNP---SVRAFNERAAINAP------IQGSAADVIRRAMIKIEP 947 Query: 620 A--------GYDIVLTVHDEIVCETPD-TDEFNASMLYHLMTSN--PSWAKGLPLKAEGY 668 A ++L VHDE++ E D E ++ +M + P+ +PL+ + Sbjct: 948 ALVEVGLADRVRMLLQVHDELIFEVEDQDVEKAMPVIVSVMENATMPALEMRVPLRVDAR 1007 Query: 669 ESKRY 673 + + Sbjct: 1008 AATNW 1012 >gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4] gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4] Length = 930 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 101/703 (14%), Positives = 197/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F D+ HD + Sbjct: 354 AFDTETDSLDYMVTN----------LVGVSFATDEGVAAYVPLAHDYLDAPQQLDRDWVL 403 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 + LK LE+ V N ++ +VL +++ + T++ + Sbjct: 404 EQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDS 461 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ Y D VT + Sbjct: 462 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIDLNEAAPYAAEDADVTLRLHN 511 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL ++ L + I G +D + + +L+Q+ Sbjct: 512 RLAANIEQDKKLKAVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLEELEQKA 571 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + GL T +T + VL P + Sbjct: 572 YEI-AEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKLILE 630 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 631 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 689 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 690 -------------------------IRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQAL 724 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V+ V+ +QR K + G++ Sbjct: 725 LDAFRDGKDIHTATAAEIMGVSIEDVSSEQRRRAKAVN--------------FGLIYGMS 770 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 771 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 800 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + A + + GR L ++ + Sbjct: 801 QYMEDTRSAAAE--------------------------QGYVETIFGRRLHLPEIQSRNG 834 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG---YDIVLTVHDE 631 + R +Q + DI+ + M+ + G +++ VHDE Sbjct: 835 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVGRWIEEHGDGRVKLLMQVHDE 885 Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V + S + LM S +PL A+ + Sbjct: 886 LVFEVEESSLSEIESKVQKLMESAAE--LKVPLVADAGHGDNW 926 >gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01] gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01] Length = 889 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 108/702 (15%), Positives = 212/702 (30%), Gaps = 163/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 +D ET + ++ +F ++ HD Sbjct: 314 ALDTETTGLDPM----------QASLVGMSFSYEADRAFYAPLTHDYLGAPDQVGVEKAL 363 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++L L N ++ + N ++ VL D+ T+V + Sbjct: 364 EILGPVLSNPEIKKIGQNIKYDWIVLARH-GADLQGVA-FDTMVASYLLNPSH------R 415 Query: 115 ALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + L ME +I+ E + ++ Y D VT +I+ Sbjct: 416 SHGLDQIAMELLEHRMISY----EEVCGKGAKAITFNQVPLEKAVPYACEDADVTFQIYG 471 Query: 174 RLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+P K Q L + + G VD L++ ++E+ Sbjct: 472 LLQPKLEKNQLLELFKTVEMPLVRVLVKMEMEGITVDSDQLQALSKEFQGGMESAEKEIY 531 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFN 278 L + ++L LF + GL ++ T+ +T +VL++ + Sbjct: 532 QLAG-EEFNIASPQQLGHILFEKLGLPVQKKTKKKTGYSTDVKVLTTLASQHELPALILR 590 Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R ++ ++ L ++ + GR+ + + TGR S QN+P + + Sbjct: 591 YR-SVAKLKSTYVDALQSLIHPETGRVHTSFNQNV-TATGRLSSSNPNLQNIPIRTPEGK 648 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R I +G ++ AD + IE R+LA ++ +++ Sbjct: 649 R-------------------------IREAFIPRKGWEMFCADYSQIELRILAHLSQDEF 683 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++ F++GED++ T + F + P VT + R K + G+ Sbjct: 684 LIELFKSGEDIHKRTASEVFELFPEFVTDEMRRQAKAIN--------------FGIIYGM 729 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 ++ + +R + + V Sbjct: 730 GAFRLSNEI------------------------------GVSRKTAQRYIDNYFVTYKGV 759 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + E +T + GR+ D+ Sbjct: 760 KKFIEETIALAHET--------------------------GMTKTLLGRTRPLPDINAKN 793 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631 R T +Q + D++ M+ A ++LTVHDE Sbjct: 794 ---RVLMEAAERIATNTP------IQGTAADLIKVAMIKVQNALEEQNMQTKMLLTVHDE 844 Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E+P + F A +L M W + LK K + Sbjct: 845 LVFESPPEEIFQAQVLAEQMMEGV-WDLDVALKVNIESGKNW 885 >gi|169634321|ref|YP_001708057.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii SDF] gi|169153113|emb|CAP02187.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii] Length = 923 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 106/705 (15%), Positives = 194/705 (27%), Gaps = 167/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 ID ET S ++ F+ FD H Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRE 398 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + +K LEN V + H+ ++ + +++ + +++ + Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 456 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V L E + K ++ + Y D VT Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217 +++ L EL + I G +D A L+ Sbjct: 505 YRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMED 564 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+ + + + +++ LF + G+ T +T + VL P Sbjct: 565 LENQAMEIAG-ETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLT 621 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + +R ++ + L+E ++D T + TGR S QN+P Sbjct: 622 EIILEHR-GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + I +R IA EG+ L+ AD + IE R++A + Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + + AF+ G+D++ T A +A VT DQR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ F + K + Q+ Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTREESQNYIKQYFQR 791 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + E Q + GR L D+ Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629 + + R Q + DI+ M+ K ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + +M S +PL E + + Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGNNW 919 >gi|156972895|ref|YP_001443802.1| DNA polymerase I [Vibrio harveyi ATCC BAA-1116] gi|156524489|gb|ABU69575.1| hypothetical protein VIBHAR_00572 [Vibrio harveyi ATCC BAA-1116] Length = 930 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 101/703 (14%), Positives = 194/703 (27%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F D+ HD + Sbjct: 354 AFDTETDSLDYMV----------ANLVGLSFATDEGIAAYVPVAHDYLDAPQQLDRDWVL 403 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +VL +++ + T++ + Sbjct: 404 AQLKPILEDEAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDS 461 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ Y D VT + Sbjct: 462 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIDLDEASPYAAEDADVTLRLHN 511 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL ++ L + I G +D + + +L+Q+ Sbjct: 512 RLFANIEQDEKLKTVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLDELEQKA 571 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + GL T +T + VL P + Sbjct: 572 YEI-AEQEFNMNSPKQLQALLFEKMGLPVINKTPSGTPSTNEEVLQELALDYPLPKLILE 630 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 631 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 689 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 690 -------------------------IRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQAL 724 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V+ V+ +QR K + G++ Sbjct: 725 LDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVN--------------FGLIYGMS 770 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 771 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 800 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + A + GR L ++ + Sbjct: 801 QYMEDTRSAA--------------------------SEQGFVETIFGRRLHLPEIQSRNG 834 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631 + R +Q + DI+ + M+ +++ VHDE Sbjct: 835 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 885 Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V + S + +LM S +PL AE + Sbjct: 886 LVFEVEESSLSEIESKVQNLMESAAE--LKVPLVAEAGHGDNW 926 >gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella tularensis subsp. novicida U112] gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE] gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112] gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE] Length = 897 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 108/702 (15%), Positives = 212/702 (30%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 323 AFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVL 372 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK ++ VAHN F+ VL ++I + T+++A Sbjct: 373 DKLKRLFADSKKVKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDMDSL 430 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + K G E IA + + + + +Y D +T +F Sbjct: 431 S------KEHLGIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH 480 Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223 + L +++ L+ L + G +D A + ++ +L+ + Sbjct: 481 FKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQSVSLETSIKELESKCY 540 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 +L + +L+ LF + GL T +T + VL + A + Sbjct: 541 NLAGQ-EFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKY 599 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L + ++++GR+ + G + TGR S QN+P S + Sbjct: 600 RH-LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 656 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA G +V AD + IE R++A ++ ++ L Sbjct: 657 ------------------------IREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLL 692 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 KAF D++ T A ++ +V+ +QR K + G++ Sbjct: 693 KAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAIN--------------FGLIYGMSA 738 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A ++ + + ++ V E Sbjct: 739 FGLARQLEI------------------------------PRAEAQEYIDIYFNRYPSVKE 768 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + +Q N + GR L ++ + Sbjct: 769 YMTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVM 802 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632 R +Q + DI+ + M+N + +V+ VHDE+ Sbjct: 803 QRNA---AERAAINAP------MQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDEL 853 Query: 633 VCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E E + + +M + +PL+ K + Sbjct: 854 VFEVKKTKLEEIVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893 >gi|49474837|ref|YP_032878.1| DNA polymerase I [Bartonella henselae str. Houston-1] gi|49237642|emb|CAF26822.1| DNA polymerase I [Bartonella henselae str. Houston-1] Length = 968 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 105/713 (14%), Positives = 213/713 (29%), Gaps = 174/713 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------- 51 D ET S + ++ F+ H Sbjct: 382 AFDTETTSLDPI----------QAKLVGFSLALQPEKAAYVPLEHVEGENDLLKGGRIVS 431 Query: 52 -----VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-- 104 +LK LE+ V + N ++ V+K I IH + T++L+ + Sbjct: 432 QIETQKALTLLKPILEDQAVLKIGQNIKYDWLVMKQY---GIVIHCFDDTMLLSYALEAG 488 Query: 105 -LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 L + A+ E G + IA + + + Y Sbjct: 489 TLTHNMNALSERW--------LGHKPIAY----KDLTHNGKKITSFAEVDLKQATLYAAE 536 Query: 164 DVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 D +T +++ L+P ++ L + + +RG VD + L+ + Sbjct: 537 DADITLRLWQVLKPQLVAQGMTRIYERLDRPLIEVLARMEERGILVDRQILLRLSGELAQ 596 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKL 269 L++E+ L+ + ++L LF + GL T+ +T + L Sbjct: 597 AAFILEEEIYQLSG-EKFNLASPKQLGDILFGKMGLPGGAKTKGGQWSTSAQTLEELAAE 655 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 + + + ++ + L + T L + TGR S QN+ Sbjct: 656 GHILPRKIIDWRQLAKLKSTYTDALPSYILPKTGRVHTNYSLAITSTGRLSSSEPNLQNI 715 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P + + +R+ +A + L+ AD + IE R+L Sbjct: 716 PVRTAEGRK-------------------------IRTAFVAPKRHVLLSADYSQIELRIL 750 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A +AF G+D++ T ++ F VA + D R K + Sbjct: 751 AHIANITALKEAFSRGQDIHAITASQIFGVAIEGMPSDIRRRAKAINF------------ 798 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 G++ A + R + Sbjct: 799 --GIIYGIS------------------------------AFGLANQLGLSRQEAGRYIQL 826 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + ++ + + Q N + GR + Sbjct: 827 YFERFPGIKDYIETTKTFARQ--------------------------NGYVETIFGRRIH 860 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYD 623 Y ++ + R +Q + DI+ M+ K Sbjct: 861 YPEIK---AASPQVRSFNERAAINAP------IQGSAADIIRRAMIQMEDALEKEKLSAK 911 Query: 624 IVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E P+ + + +++ +M + P + +PL+ + ++ + Sbjct: 912 MLLQVHDELVFEVPEEESKKTMAVVKKVMENATMPVLSLSVPLEVKVMVAQNW 964 >gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB] gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB] Length = 928 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 104/707 (14%), Positives = 208/707 (29%), Gaps = 172/707 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54 D ET + L+ ++ +F HD + Sbjct: 352 AFDLETDALDTLS----------ANIVGISFAVAPGEAAYLPVAHDYLDAPDQLDRAAVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL---PSALK 110 LK LE+ + V N ++R VLK DI + ++ + + Sbjct: 402 AQLKPLLEDENAWKVGQNLKYDRGVLKNY---DIELAGIKFDAMLESYILNSVVGKHDMD 458 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 ++ L + + ++ A Y D VT + Sbjct: 459 SLAAR------------WLNHKTVTFQEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQ 506 Query: 171 IFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + ++ P E L + I G +D ++ ++ + +L+ Sbjct: 507 LHLKMWPELEKEAGPKKVFEQIEMPLLTVISRIERNGVLIDQSILAQHSKELTARLAELE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 + L + ++L+ LF + G+ T +T + VL+ P Sbjct: 567 LKAHELAG-EPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKV 625 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R S+ + L +N GR+ + + TGR S QN+P + Sbjct: 626 ILEHR-GLSKLKSTYTDKLPLMINPISGRVHTSYHQAV-TATGRLSSADPNLQNIPVRND 683 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R +A++G ++V AD + IE R++A ++ Sbjct: 684 EGRR-------------------------IRQAFVAAKGHRIVAADYSQIELRIMAHLSQ 718 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF GED++ T + F VA +V+ +QR K + Sbjct: 719 DKGLLDAFAQGEDIHRATASEVFGVALDKVSGEQRRSAKAINF--------------GLI 764 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + + ++ + +++ Sbjct: 765 YGMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFERY 794 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V Q +N + GR L D+ Sbjct: 795 PGVLRYMENTRQLA--------------------------ASNGYVETLEGRRLWLPDIK 828 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLT 627 ++ + + R +Q + DI+ M+ + +++ Sbjct: 829 SSNAIRR---KAAERAAINAP------MQGTAADIIKRAMIAVDEWLEQQNDNAVRMIMQ 879 Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E A + LM + +PL E + Sbjct: 880 VHDELVFEVKAEAVEEASQKIRALMEGSVQ--LDVPLLVEVGVGNNW 924 >gi|255262095|ref|ZP_05341437.1| DNA polymerase I [Thalassiobium sp. R2A62] gi|255104430|gb|EET47104.1| DNA polymerase I [Thalassiobium sp. R2A62] Length = 932 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 100/716 (13%), Positives = 201/716 (28%), Gaps = 178/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51 + +D ET S ++ ++ + H Sbjct: 346 YVAVDTETTSLNEMR----------AELVGISLCVKAGQACYIPINHKEGANDDLFGSDK 395 Query: 52 ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 V+ +LK L++ + + N ++ + C + + T++++ + Sbjct: 396 LAEGQMAEAVVLSMLKPMLQDDSILKIGQNMKYDAKIFARC---GVDVAPIDDTMLMSYA 452 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + + + L G I R + Sbjct: 453 QNAGLHNHGMDTLSDRL--------LGHTPIPIKS----LLGTGKSAITFDRVDVAEAVK 500 Query: 160 YCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T +++ L+P + + L + + G VD ++ Sbjct: 501 YAAEDADITLRLWQHLKPQLHVKGVTTVYETLERPLVPVLAEMEMTGIKVDRDTLSRMSN 560 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265 + L+ E+ L + ++L LF E G+ +T T VL Sbjct: 561 AFAQKMAGLEAEIHELAG-RSFNVGSPKQLGEILFDEMGIEGGKKGKTGAYATGADVLED 619 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVF 324 +V + R S+ + L +N GR+ + GA+ TGR + Sbjct: 620 LAIEHELPGRVLDWRQ-LSKLKSTYTDALQNHINAETGRVHTSYSIAGAN-TGRLASTDP 677 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P S +R IA EGK LV D + I Sbjct: 678 NLQNIPIRSEEGRR-------------------------IREAFIAEEGKVLVALDYSQI 712 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA +A +AF G D++ T + F+V Q+T D R K + Sbjct: 713 ELRILAHVADIPSLKQAFADGMDIHAMTASEMFDVPLDQMTSDIRRQAKAIN-------- 764 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 G++ A + Sbjct: 765 ------FGVIYGIS------------------------------GFGLARNLRIPRFEAQ 788 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + ++ + ++ ++ + + Sbjct: 789 GFIDRYFERFPGIRTYMDDTVAFAKE--------------------------HGYVQTLF 822 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKA 620 GR + ++G R +Q + D++ M+ Sbjct: 823 GRKINTPEIGAK----GPQAGFAKRAAINAP------IQGTAADVIRRAMVRMPDAIADQ 872 Query: 621 GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + + +M + P+ + L A+ E + + Sbjct: 873 PAKMLLQVHDELLFEVENGAQEKLIETARDVMENAAMPAVKLDVTLTADAGEGQNW 928 >gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica FSC147] gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica FSC147] Length = 897 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 106/701 (15%), Positives = 211/701 (30%), Gaps = 164/701 (23%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQ 55 D ET S + ++ +F + H + Sbjct: 324 FDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVLD 373 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 LK ++ VAHN F+ VL ++I + T+++A + Sbjct: 374 KLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDMDSLS 431 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 K G E IA + + + + +Y D +T +F Sbjct: 432 ------KEHLGIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHF 481 Query: 176 EPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELES 224 + L +++ L+ L + G +D + ++ +L+ + + Sbjct: 482 KALLEQDKVLFKLYCELEMPLTTILNQMEKTGVKIDATKLIQQSASLETSIKELESKCYN 541 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280 L + +L+ LF + GL T +T + VL + A + R Sbjct: 542 LAGQ-EFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYR 600 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 S+ + L + ++++GR+ + G + TGR S QN+P S + Sbjct: 601 H-LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK-- 656 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R IA +G +V AD + IE R++A ++ ++ LK Sbjct: 657 -----------------------IREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLK 693 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F D++ T A ++ +V+ +QR K + G++ Sbjct: 694 VFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAIN--------------FGLIYGMSAF 739 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A ++ + + ++ V E Sbjct: 740 GLARQLEI------------------------------PRAEAQEYIDIYFNRYPSVKEY 769 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + +Q N + GR L ++ + Sbjct: 770 MTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVMQ 803 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIV 633 R +Q + DI+ + M+N + +V+ VHDE+V Sbjct: 804 RNA---AERAAINAP------MQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELV 854 Query: 634 CETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E E + + +M + +PL+ K + Sbjct: 855 FEVKKTKLEEIVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893 >gi|319898198|ref|YP_004158291.1| DNA polymerase I [Bartonella clarridgeiae 73] gi|319402162|emb|CBI75688.1| DNA polymerase I [Bartonella clarridgeiae 73] Length = 968 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 208/715 (29%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 D ET S + ++ F+ H Sbjct: 380 YFAFDTETTSLDPM----------QAKLVGFSLALQPGKAAYIPLEHTAGEDGLLAGGRI 429 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN- 103 +LK LEN + + N ++ V+K DI + + T++L+ + Sbjct: 430 VPQIETQKALALLKPILENQAILKIGQNIKYDWLVMKQY---DIVMRSFDDTMLLSYALE 486 Query: 104 --GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G + I + + + + Y Sbjct: 487 AGISTHGIDVLSERW--------LGHKPITY----KDLTYNGKKIVSFAQIDLKQATLYA 534 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D +T +++ L+P ++ L + + +RG VD + L+ + Sbjct: 535 AEDADITLRLWQVLKPQLVAQRMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGEL 594 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 L++E+ L + ++L LF + GL T+ +T + L Sbjct: 595 AQAALNLEEEIYQLVG-ERFNIASPKQLGDILFGKMGLPGGAKTKNGQWSTSAQTLEELA 653 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L + + T L + TGR S Q Sbjct: 654 TEGHILPRKIVDWRQLAKLKSTYTDALPSYILTKTGRVHTNYSLATTSTGRLSSSEPNLQ 713 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IASEG L+ AD + IE R Sbjct: 714 NIPARTAEGRK-------------------------IRAAFIASEGHILLSADYSQIELR 748 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA A +AF G+D++ T ++ F VA + D R K + + Y Sbjct: 749 ILAHFADIGALKEAFLQGQDIHAMTASQMFGVAVEGMPSDIRQRAKAINFGIIYG----- 803 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 L Sbjct: 804 ISSFGLANQL---------------------------------------GISRKEAGNYI 824 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + ++ + GR Sbjct: 825 RLYFERFPGIEDYMEKTKMFAR--------------------------HHGYVETIFGRR 858 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAG 621 + Y ++ R +Q + DI+ M+ K Sbjct: 859 IHYPEIKTANP---QIRAFNERAAINAP------IQGSAADIIRRAMIQVENALEKEKLS 909 Query: 622 YDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E ++ A ++ +M + P+ + +PL+ + ++ + Sbjct: 910 AKMLLQVHDELIFEVSKSESTKTAILIKKVMENATMPALSLSVPLEVKVIAAQNW 964 >gi|215919261|ref|NP_820774.2| DNA polymerase I [Coxiella burnetii RSA 493] gi|206584145|gb|AAO91288.2| DNA polymerase I [Coxiella burnetii RSA 493] Length = 902 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 110/704 (15%), Positives = 201/704 (28%), Gaps = 161/704 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 D ET + ++ +F H HD Sbjct: 324 KVFAFDTETTDFNAI----------QAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKE 373 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111 + + LK LE+ + TI+ N ++ VL L I + TL+ + S Sbjct: 374 EVLRELKPLLEDPNKTIICQNLKYDAEVLAK-EGLTIR-AKTYDTLLASYVLNSSSTRHD 431 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + K L K E + + Y D VT ++ Sbjct: 432 L---------NTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDADVTLQL 482 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +L PL E L + + RG VD A+ + + L+Q Sbjct: 483 HHKLMPLIEKEKNLKKVFEQIEMPLVPILMKMEMRGVLVDTAMLQAQSIELGGRIALLEQ 542 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+T L+ E L + T +T + VL P + Sbjct: 543 QAYKLAG-REFNLSSPKQLQTILYEELKLPIFKKTPGGQPSTAENVLQDLALDYPLPKVI 601 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R ++ + L ++ R T + TGR S QN+P + Sbjct: 602 LEHR-SLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEG 660 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + +R IA G ++V AD + +E R++A ++ + Sbjct: 661 RK-------------------------IRRAFIAPPGFQMVAADYSQVELRIIAHISKDP 695 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +KAF+ D++ T A F V QVT +QR K + G Sbjct: 696 SLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF--------------GLLYG 741 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + + +++ + Sbjct: 742 MSSFGL------------------------------GRQLGIGRDLAKEYIDIYFKRYPK 771 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR + D+ + Sbjct: 772 VHEYMQKIRIVAFT--------------------------QGYVETLFGRRVYLPDIHAS 805 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630 R R +Q + DI+ M+ + +++ VHD Sbjct: 806 NM---QRRRAAERAAINAP------MQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHD 856 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E + D + M A +PL + + Sbjct: 857 ELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVDVGVGGNW 898 >gi|153833784|ref|ZP_01986451.1| DNA polymerase I [Vibrio harveyi HY01] gi|148869842|gb|EDL68810.1| DNA polymerase I [Vibrio harveyi HY01] Length = 930 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 101/703 (14%), Positives = 194/703 (27%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F D+ HD + Sbjct: 354 AFDTETDSLDYMV----------ANLVGLSFATDEGIAAYVPVAHDYLDAPQQLDRDWVL 403 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +VL +++ + T++ + Sbjct: 404 AQLKPILEDEAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDS 461 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ Y D VT + Sbjct: 462 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIDLDEASPYAAEDADVTLRLHN 511 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL ++ L + I G +D + + +L+Q+ Sbjct: 512 RLFANIEQDDKLKTVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLDELEQKA 571 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + GL T +T + VL P + Sbjct: 572 YEI-AEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKLILE 630 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 631 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 689 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 690 -------------------------IRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQAL 724 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V+ V+ +QR K + G++ Sbjct: 725 LDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVN--------------FGLIYGMS 770 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 771 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 800 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + A + GR L ++ + Sbjct: 801 QYMEDTRSAA--------------------------SEQGFVETIFGRRLHLPEIQSRNG 834 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631 + R +Q + DI+ + M+ +++ VHDE Sbjct: 835 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 885 Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V + S + +LM S +PL AE + Sbjct: 886 LVFEVEESSLSEIESKVQNLMESAAE--LKVPLVAEAGHGDNW 926 >gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18] gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] Length = 897 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 106/702 (15%), Positives = 211/702 (30%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 323 AFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVL 372 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK ++ VAHN F+ VL ++I + T+++A Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDIDSL 430 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + K G E IA + + + + +Y D +T +F Sbjct: 431 S------KEHLGIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH 480 Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223 + L +++ L+ L + G +D + ++ +L+ + Sbjct: 481 FKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCY 540 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 +L + +L+ LF + GL T +T + VL + A + Sbjct: 541 NLAGQ-EFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKY 599 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L + ++++GR+ + G + TGR S QN+P S + Sbjct: 600 RH-LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 656 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA +G +V AD + IE R++A ++ ++ L Sbjct: 657 ------------------------IREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLL 692 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 K F D++ T A ++ +V+ +QR K + G++ Sbjct: 693 KVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAIN--------------FGLIYGMSA 738 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A ++ + + ++ V E Sbjct: 739 FGLARQLEI------------------------------PRAEAQEYIDIYFNRYPSVKE 768 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + +Q N + GR L ++ + Sbjct: 769 YMTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVM 802 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632 R +Q + DI+ + M+N + +V+ VHDE+ Sbjct: 803 QRNA---AERAAINAP------MQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDEL 853 Query: 633 VCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E E + + +M + +PL+ K + Sbjct: 854 VFEVKKTKLEEIVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893 >gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus marinus] Length = 924 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 110/698 (15%), Positives = 203/698 (29%), Gaps = 160/698 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-----DCVHDPVMPQVLK 58 L ID ET S A ++ AF ++ D + + L Sbjct: 355 LAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERLA 404 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116 L V N ++ VL + +P + T+V P L + Sbjct: 405 PILRRAQR-KVGQNLKYDLVVLARH-GVQVPP-PYFDTMVAHYLIAPEEPHNLDVLARQY 461 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI----- 171 +M ELI K + G Y D + ++ Sbjct: 462 --LRYQMVSITELI----------GSGRDQKSMRDVSIDEVGPYACEDTDIALQLADVLA 509 Query: 172 -----FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + + G C+D A+ + + ++ E +L+ ++ + Sbjct: 510 AELDRHGLRHIAEEMEFPLIEVLADMERTGICIDRAVLREIGKQLEAELHELEVKIYEVA 569 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L LF + GL T +T + VL P + + R Sbjct: 570 GV-EFNIGSPQQLADVLFKKLGLKPRARTSTGRPSTKESVLQELATQHPLPGLILDWRH- 627 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ ++ L ++ + T + TGR S QN+P + E Sbjct: 628 LAKLKSTYVDGLEPLIHPETGRIHTTFNQTVTATGRLSSSNPNLQNIPVRTEMGRE---- 683 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R + G KL+ AD IE R+LA ++G++ +AF Sbjct: 684 ---------------------IRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAF 722 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G+D++ T AR F V P QVT +QR G++ Sbjct: 723 LEGQDIHTATAARVFKVPPEQVTPEQRRRA--------------KMVNYGIPYGIS---- 764 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + + + +++ V+ Sbjct: 765 --------------------------AWGLAQRLRCSTREAQELIEEYQRAFPGVTRY-- 796 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 LH+ E+ + G GR ++ + + Sbjct: 797 -LHRVVEEARQKGYVETLL-----------------------GRRRYVPNINSRNRAERS 832 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 R +Q D++ M++ ++L VHDE+V E Sbjct: 833 M---AERIA------VNMPIQGTQADMIKLAMVHIYHRLKREGYRAKMLLQVHDELVFEM 883 Query: 637 PDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 P + L M +G+P++ + + Sbjct: 884 PPEEVEPVRQLVEQEMKQALPL-EGVPIEVDIGVGDNW 920 >gi|161831073|ref|YP_001597618.1| DNA polymerase I [Coxiella burnetii RSA 331] gi|161762940|gb|ABX78582.1| DNA polymerase I [Coxiella burnetii RSA 331] Length = 902 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 110/704 (15%), Positives = 201/704 (28%), Gaps = 161/704 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 D ET + ++ +F H HD Sbjct: 324 KVFAFDTETTDFNAI----------QAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKE 373 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111 + + LK LE+ + TI+ N ++ VL L I + TL+ + S Sbjct: 374 EVLRELKPLLEDPNKTIICQNLKYDAEVLAK-EGLTIR-AKTYDTLLASYVLNSSSTRHD 431 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + K L K E + + Y D VT ++ Sbjct: 432 L---------NTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDADVTLQL 482 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +L PL E L + + RG VD A+ + + L+Q Sbjct: 483 HHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSLELGGRIALLEQ 542 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+T L+ E L + T +T + VL P + Sbjct: 543 QAYKLAG-REFNLSSPKQLQTILYEELKLPIFKKTPGGQPSTAENVLQDLALDYPLPKVI 601 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R ++ + L ++ R T + TGR S QN+P + Sbjct: 602 LEHR-SLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEG 660 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + +R IA G ++V AD + +E R++A ++ + Sbjct: 661 RK-------------------------IRRAFIAPPGFQMVAADYSQVELRIIAHISKDP 695 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +KAF+ D++ T A F V QVT +QR K + G Sbjct: 696 SLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF--------------GLLYG 741 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + + +++ + Sbjct: 742 MSSFGL------------------------------GRQLGIGRDLAQEYIDIYFKRYPK 771 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR + D+ + Sbjct: 772 VHEYMQKIRIVAFT--------------------------QGYVETLFGRRVYLPDIHAS 805 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630 R R +Q + DI+ M+ + +++ VHD Sbjct: 806 NM---QRRRAAERAAINAP------MQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHD 856 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E + D + M A +PL + + Sbjct: 857 ELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVDVGVGGNW 898 >gi|254561612|ref|YP_003068707.1| DNA polymerase I [Methylobacterium extorquens DM4] gi|254268890|emb|CAX24851.1| DNA polymerase I [Methylobacterium extorquens DM4] Length = 1047 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 110/726 (15%), Positives = 201/726 (27%), Gaps = 185/726 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET + A ++ + H Sbjct: 448 VIAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGE 497 Query: 51 -----------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 ++LK LE+ V N ++ +VL I + + Sbjct: 498 SGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVTPF 554 Query: 94 ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T++++ + + G + I Sbjct: 555 DDTMLISYVLDAGKGGHGMDELARRH--------LGHQPITF----ADVAGTGRNKVTFD 602 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVD 200 R A Y D VT +++ ++P E L + + G +D Sbjct: 603 RVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAID 662 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--- 257 + L+ +L++E++ +++ LF + GL T + Sbjct: 663 RNMLSRLSGDFSQILARLEEEIQEDAG-ERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQW 721 Query: 258 -TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 T +L + + N + S+ ++L + + T L A+ T Sbjct: 722 ATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTT 781 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + +R +A EGKKL Sbjct: 782 GRLSSSDPNLQNIPIRTEEGRR-------------------------IRRAFVAPEGKKL 816 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R+LA +A +AFE G D++ T + F VA Q+T D R K + Sbjct: 817 ISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTIN 876 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ A Sbjct: 877 --------------FGIIYGIS------------------------------AFGLADRL 892 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 K + ++ + + + E G Sbjct: 893 GIGREEASAFIKQYFERFPGIRDY---IDTTKRSCREKGYVTTL---------------- 933 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 GR Y + +N + R+ +Q + DI+ M Sbjct: 934 -------FGRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTR 977 Query: 617 ATKAG------YDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWA--KGLPLKAEG 667 A ++L VHDE+V E PD + ++ +M P+ A +PL E Sbjct: 978 MEDALEAKRLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEA 1037 Query: 668 YESKRY 673 + + Sbjct: 1038 RAAGNW 1043 >gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium extorquens DM4] Length = 1052 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 110/726 (15%), Positives = 201/726 (27%), Gaps = 185/726 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET + A ++ + H Sbjct: 453 VIAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGE 502 Query: 51 -----------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 ++LK LE+ V N ++ +VL I + + Sbjct: 503 SGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVTPF 559 Query: 94 ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T++++ + + G + I Sbjct: 560 DDTMLISYVLDAGKGGHGMDELARRH--------LGHQPITF----ADVAGTGRNKVTFD 607 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVD 200 R A Y D VT +++ ++P E L + + G +D Sbjct: 608 RVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAID 667 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--- 257 + L+ +L++E++ +++ LF + GL T + Sbjct: 668 RNMLSRLSGDFSQILARLEEEIQEDAG-ERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQW 726 Query: 258 -TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 T +L + + N + S+ ++L + + T L A+ T Sbjct: 727 ATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTT 786 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + +R +A EGKKL Sbjct: 787 GRLSSSDPNLQNIPIRTEEGRR-------------------------IRRAFVAPEGKKL 821 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R+LA +A +AFE G D++ T + F VA Q+T D R K + Sbjct: 822 ISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTIN 881 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ A Sbjct: 882 --------------FGIIYGIS------------------------------AFGLADRL 897 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 K + ++ + + + E G Sbjct: 898 GIGREEASAFIKQYFERFPGIRDY---IDTTKRSCREKGYVTTL---------------- 938 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 GR Y + +N + R+ +Q + DI+ M Sbjct: 939 -------FGRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTR 982 Query: 617 ATKAG------YDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWA--KGLPLKAEG 667 A ++L VHDE+V E PD + ++ +M P+ A +PL E Sbjct: 983 MEDALEAKRLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEA 1042 Query: 668 YESKRY 673 + + Sbjct: 1043 RAAGNW 1048 >gi|218530645|ref|YP_002421461.1| DNA polymerase I [Methylobacterium chloromethanicum CM4] gi|218522948|gb|ACK83533.1| DNA polymerase I [Methylobacterium chloromethanicum CM4] Length = 1047 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 110/726 (15%), Positives = 201/726 (27%), Gaps = 185/726 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET + A ++ + H Sbjct: 448 VIAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGE 497 Query: 51 -----------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 ++LK LE+ V N ++ +VL I + + Sbjct: 498 SGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVRPF 554 Query: 94 ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T++++ + + G + I Sbjct: 555 DDTMLISYVLDAGKGGHGMDELARRH--------LGHQPITF----ADVAGTGRNKVTFD 602 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVD 200 R A Y D VT +++ ++P E L + + G +D Sbjct: 603 RVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAID 662 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--- 257 + L+ +L++E++ +++ LF + GL T + Sbjct: 663 RNMLSRLSGDFSQILARLEEEIQEDAG-ERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQW 721 Query: 258 -TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 T +L + + N + S+ ++L + + T L A+ T Sbjct: 722 ATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTT 781 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + +R +A EGKKL Sbjct: 782 GRLSSSDPNLQNIPIRTEEGRR-------------------------IRRAFVAPEGKKL 816 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R+LA +A +AFE G D++ T + F VA Q+T D R K + Sbjct: 817 ISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTIN 876 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ A Sbjct: 877 --------------FGIIYGIS------------------------------AFGLADRL 892 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 K + ++ + + + E G Sbjct: 893 GIGREEASAFIKQYFERFPGIRDY---IDTTKRSCREKGYVTTL---------------- 933 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 GR Y + +N + R+ +Q + DI+ M Sbjct: 934 -------FGRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTR 977 Query: 617 ATKAG------YDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWA--KGLPLKAEG 667 A ++L VHDE+V E PD + ++ +M P+ A +PL E Sbjct: 978 MEDALEAKKLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEA 1037 Query: 668 YESKRY 673 + + Sbjct: 1038 RAAGNW 1043 >gi|254417961|ref|ZP_05031685.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3] gi|196184138|gb|EDX79114.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3] Length = 971 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 102/720 (14%), Positives = 201/720 (27%), Gaps = 183/720 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV------------- 52 D ET S A + + + H+ Sbjct: 379 FDTETSSLS----------ATHAGLCGVSLAVGPNEACYIPLTHEHEPQAGEGGLFGVPG 428 Query: 53 -------------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99 LK LEN V V N+ ++ V+ I + + T+++ Sbjct: 429 EAREPIQQLDKAKALAKLKVLLENPSVLKVLQNAKYDLAVMAR---RGIRVAPYDDTMLI 485 Query: 100 ARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156 + + + + G + + K A + Sbjct: 486 SYVLEGGLHGHGMDELAR--------LHLGHDPVPFKS----VAGTGKSQKSFRHVALKP 533 Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHT 206 +Y D VT +++ L+P ++E + L + + G +D Sbjct: 534 ATQYAAEDADVTLRLWRLLKPRLAREGLSTVYETLERPLPAVLAEMETAGVRIDPDRLKR 593 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRV 262 L+ + +L+ + + + ++ LF E L T + T V Sbjct: 594 LSSEFGLRMAELEAQAHEIAGRP-FNIGSPRQIGEILFGELNLPGGKKTASGQWGTDASV 652 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L + + R S+ + L A + T L A+ TGR + Sbjct: 653 LEDLAATHALPRVLLDWRQ-LSKLKGTYTDALTAAADPATDRVHTSYQLAAATTGRLASS 711 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 QN+P + + E +R IA+ G L+ AD + Sbjct: 712 DPNLQNIPIRTETGRE-------------------------IRQAFIAAPGHLLISADYS 746 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R+LA + +AF+ G D++ T + F V + + R K + + Sbjct: 747 QIELRLLAHIGDIPELKRAFKAGLDIHAATASEMFGVPVEGMPSETRRRAKAINFGIV-- 804 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 G++ A + + Sbjct: 805 ------------YGISAFGLAAQLGIDQG------------------------------E 822 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 K + + + ++ Q + Sbjct: 823 AGAYIKTYFDRFPGIRTYMDKTRAEVRQA--------------------------GFVST 856 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----AT 618 GR + + + R +Q + DI+ M+ Sbjct: 857 VFGRRIHIPAIHSKSGAERQF---GERAAINAP------IQGAAADIIRRAMIRMPTALA 907 Query: 619 KAGY--DIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 +AG ++L VHDE+V ETP+ + +++ +M + P+ A +PL + + + Sbjct: 908 EAGLTTRMLLQVHDELVFETPEAEADRAITVIKRVMETASDPAVALTVPLVVDARAAPNW 967 >gi|296445991|ref|ZP_06887941.1| DNA polymerase I [Methylosinus trichosporium OB3b] gi|296256509|gb|EFH03586.1| DNA polymerase I [Methylosinus trichosporium OB3b] Length = 993 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 108/716 (15%), Positives = 202/716 (28%), Gaps = 176/716 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----------DPV 52 + +D ET S ++ ++ + H Sbjct: 404 VAMDTETTSLDPMSC----------DLVGVSLATAPGRACYIPLRHVASAGPDLLGGGEP 453 Query: 53 MPQV---------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 P LK LE V +A N ++ VL C + + T++++ + Sbjct: 454 PPAQIPFDDAIARLKPLLEARSVLKIAQNMKYDLLVLACC---GVDVAPIEDTMLISYAL 510 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 L + K G E I R EY Sbjct: 511 DSGRNNHGLDELA--------KKHLGHECIPFAA----VAGSGRSFIGFARVPLDKATEY 558 Query: 161 CKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQI 210 D V +++ L+P + E + + + RG +D + L+ Sbjct: 559 AAEDADVALRLWRVLKPRLAAEHMTSVYETLERPMVGVLAAMERRGVAIDRNILSRLSGE 618 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266 + +L+ E+ L + ++L LF GL T +T VL Sbjct: 619 FAQDMARLEAEIYDLAG-ESFNLGSPKQLGDILFGRMGLPGAKKTATGAWSTSASVLEDL 677 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + + + S+ + L +N T L A+ TGR S Sbjct: 678 AESGNTFAARILDWRQLSKLKSTYTDALPGFVNKATNRVHTSYALAATTTGRLSSSEPNL 737 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P + + + +R +A G L+ AD + IE Sbjct: 738 QNIPVRNEAGRK-------------------------IRKAFVAEPGHALISADYSQIEL 772 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA +A +AF G D++ T + F V + D R K + Sbjct: 773 RLLAHIADIPQLRQAFAEGIDIHAKTASEMFGVPVQGMPSDVRRRAKAINF--------- 823 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ A + Sbjct: 824 -----GIIYGIS------------------------------AFGLANQLGIPREEAAAY 848 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 K + ++ + + ++ + + G GR Sbjct: 849 IKRYFERFPGIRDYMDKTKRLVRE---QGVVTTI-----------------------FGR 882 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620 + +G++ + R +Q + DI+ M A Sbjct: 883 KCHFPRIGSSNASER---AFFERAAINAP------IQGAAADIIRRAMARMDAALATAGC 933 Query: 621 GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673 +++ VHDE+V E P + E +++ +M P A +PL+ E ++ + Sbjct: 934 SARMLMQVHDELVFEAPLEETETTIAVVKRVMEEAPHPAATLTVPLQVEARAAQNW 989 >gi|268316907|ref|YP_003290626.1| DNA polymerase I [Rhodothermus marinus DSM 4252] gi|262334441|gb|ACY48238.1| DNA polymerase I [Rhodothermus marinus DSM 4252] Length = 924 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 109/698 (15%), Positives = 203/698 (29%), Gaps = 160/698 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-----DCVHDPVMPQVLK 58 L ID ET S A ++ AF ++ D + + L Sbjct: 355 LAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERLA 404 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116 L V N ++ VL +++P + T+V P L + Sbjct: 405 PILRRAQR-KVGQNLKYDLVVLAQH-GVEVPP-PYFDTMVAHYLIAPEEPHNLDVLARQY 461 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI----- 171 +M ELI K + G Y D + ++ Sbjct: 462 --LRYQMVAITELI----------GSGRDQKSMRDVSIDEVGPYACEDTDIALQLADVLA 509 Query: 172 -----FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + + G C+D + + + ++ E +L+ ++ + Sbjct: 510 AELDRHGLRHIAEEMEFPLIEVLADMERTGICIDRTVLREIGKQLEAELHELEAKIYEVA 569 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L LF + GL T +T + VL P + + R Sbjct: 570 GV-EFNIGSPQQLADVLFKKLGLKPRARTSTGRPSTKESVLQELATQHPLPGLILDWRH- 627 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ ++ L ++ + T + TGR S QN+P + E Sbjct: 628 LAKLKSTYVDGLEPLIHPETGRIHTTFNQTVTATGRLSSSNPNLQNIPVRTEMGRE---- 683 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R + G KL+ AD IE R+LA ++G++ +AF Sbjct: 684 ---------------------IRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAF 722 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G+D++ T AR F V P QVT +QR G++ Sbjct: 723 LEGQDIHTATAARVFKVPPEQVTPEQRRRA--------------KMVNYGIPYGIS---- 764 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + + + +++ V+ Sbjct: 765 --------------------------AWGLAQRLRCSTREAQELIEEYQRAFPGVTRY-- 796 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 LH+ E+ + G GR ++ + + Sbjct: 797 -LHRVVEEARQKGYVETLL-----------------------GRRRYVPNINSRNRAERS 832 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 R +Q D++ M++ ++L VHDE+V E Sbjct: 833 M---AERIA------VNMPIQGTQADMIKLAMVHIYHRLQREGYRAKMLLQVHDELVFEM 883 Query: 637 PDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 P + L M +G+P++ + + Sbjct: 884 PPEEVEPVRQLVEQEMKQALPL-EGVPIEVDIGVGDNW 920 >gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp. novicida GA99-3549] gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548] gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549] gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548] Length = 897 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 108/702 (15%), Positives = 212/702 (30%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 323 AFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVL 372 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK ++ VAHN F+ VL ++I + T+++A Sbjct: 373 DKLKRLFADSKKVKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDMDSL 430 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + K G E IA + + + + +Y D +T +F Sbjct: 431 S------KEHLGIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH 480 Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223 + L +++ L+ L + G +D A + ++ +L+ + Sbjct: 481 FKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQSASLETSIKELESKCY 540 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 +L + +L+ LF + GL T +T + VL + A + Sbjct: 541 NLAGQ-EFNLSSPVQLREILFEKMGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKY 599 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L + ++++GR+ + G + TGR S QN+P S + Sbjct: 600 RH-LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 656 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA G +V AD + IE R++A ++ ++ L Sbjct: 657 ------------------------IREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLL 692 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 KAF D++ T A ++ +V+ +QR K + G++ Sbjct: 693 KAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAIN--------------FGLIYGMSA 738 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A ++ + + ++ V E Sbjct: 739 FGLARQLEI------------------------------PRAEAQEYIDIYFNRYPSVKE 768 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + +Q N + GR L ++ + Sbjct: 769 YMTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVM 802 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632 R +Q + DI+ + M+N + +V+ VHDE+ Sbjct: 803 QRNA---AERAAINAP------MQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDEL 853 Query: 633 VCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E E + + +M + +PL+ K + Sbjct: 854 VFEVKKTKLEEIVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893 >gi|240139017|ref|YP_002963492.1| DNA polymerase I [Methylobacterium extorquens AM1] gi|240008989|gb|ACS40215.1| DNA polymerase I [Methylobacterium extorquens AM1] Length = 1047 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 109/726 (15%), Positives = 200/726 (27%), Gaps = 185/726 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET + A ++ + H Sbjct: 448 VIAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGE 497 Query: 51 -----------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 ++LK LE+ V N ++ +VL I + + Sbjct: 498 SGAGADASDKQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVRPF 554 Query: 94 ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T++++ + + G + I Sbjct: 555 DDTMLISYVLDAGKGGHGMDELARRH--------LGHQPITF----ADVAGTGRNKVTFD 602 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVD 200 A Y D VT +++ ++P E L + + G +D Sbjct: 603 HVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAID 662 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--- 257 + L+ +L++E++ +++ LF + GL T + Sbjct: 663 RNMLSRLSGDFSQILARLEEEIQEDAG-ERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQW 721 Query: 258 -TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 T +L + + N + S+ ++L + + T L A+ T Sbjct: 722 ATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTT 781 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + +R +A EGKKL Sbjct: 782 GRLSSSDPNLQNIPIRTEEGRR-------------------------IRRAFVAPEGKKL 816 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R+LA +A +AFE G D++ T + F VA Q+T D R K + Sbjct: 817 ISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTIN 876 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ A Sbjct: 877 --------------FGIIYGIS------------------------------AFGLADRL 892 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 K + ++ + + + E G Sbjct: 893 GIGREEASAFIKQYFERFPGIRDY---IDTTKRSCREKGYVTTL---------------- 933 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 GR Y + +N + R+ +Q + DI+ M Sbjct: 934 -------FGRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTR 977 Query: 617 ATKAG------YDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWA--KGLPLKAEG 667 A ++L VHDE+V E PD + ++ +M P+ A +PL E Sbjct: 978 MEDALEAKKLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEA 1037 Query: 668 YESKRY 673 + + Sbjct: 1038 RAAGNW 1043 >gi|212211830|ref|YP_002302766.1| DNA polymerase I [Coxiella burnetii CbuG_Q212] gi|212010240|gb|ACJ17621.1| DNA polymerase I [Coxiella burnetii CbuG_Q212] Length = 902 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 110/704 (15%), Positives = 201/704 (28%), Gaps = 161/704 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 D ET + ++ +F H HD Sbjct: 324 KVFAFDTETTDFNAI----------QAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKE 373 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111 + + LK LE+ + TI+ N ++ VL L I + TL+ + S Sbjct: 374 EVLRKLKPLLEDPNKTIICQNLKYDAEVLAK-EGLTIR-AKTYDTLLASYVLNSSSTRHD 431 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + K L K E + + Y D VT ++ Sbjct: 432 L---------NTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDADVTLQL 482 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +L PL E L + + RG VD A+ + + L+Q Sbjct: 483 HHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSIELSGRIALLEQ 542 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+T L+ E L + T +T + VL P + Sbjct: 543 QAYKLAG-REFNLSSPKQLQTILYEELKLPIFKKTPGGQPSTAENVLQDLALDYPLPKVI 601 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R ++ + L ++ R T + TGR S QN+P + Sbjct: 602 LEHR-SLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEG 660 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + +R IA G ++V AD + +E R++A ++ + Sbjct: 661 RK-------------------------IRRAFIAPPGFQMVAADYSQVELRIIAHISKDP 695 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +KAF+ D++ T A F V QVT +QR K + G Sbjct: 696 SLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF--------------GLLYG 741 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + + +++ + Sbjct: 742 MSSFGL------------------------------GRQLGIGRDLAQEYIDIYFKRYPK 771 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR + D+ + Sbjct: 772 VHEYMQKIRIVAFT--------------------------QGYVETLFGRRVYLPDIHAS 805 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630 R R +Q + DI+ M+ + +++ VHD Sbjct: 806 NM---QRRRAAERAAINAP------MQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHD 856 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E + D + M A +PL + + Sbjct: 857 ELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVDVGVGGNW 898 >gi|163851894|ref|YP_001639937.1| DNA polymerase I [Methylobacterium extorquens PA1] gi|163663499|gb|ABY30866.1| DNA polymerase I [Methylobacterium extorquens PA1] Length = 1047 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 110/726 (15%), Positives = 201/726 (27%), Gaps = 185/726 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET + A ++ + H Sbjct: 448 VIAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGE 497 Query: 51 -----------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 ++LK LE+ V N ++ +VL I + + Sbjct: 498 SGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVRPF 554 Query: 94 ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T++++ + + G + I Sbjct: 555 DDTMLISYVLDAGKGGHGMDELARRH--------LGHQPITF----ADVAGTGRNKVTFD 602 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVD 200 R A Y D VT +++ ++P E L + + G +D Sbjct: 603 RVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAID 662 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--- 257 + L+ +L++E++ +++ LF + GL T + Sbjct: 663 RNMLSRLSGDFSQILARLEEEIQEDAG-ERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQW 721 Query: 258 -TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 T +L + + N + S+ ++L + + T L A+ T Sbjct: 722 ATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTT 781 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + +R +A EGKKL Sbjct: 782 GRLSSSDPNLQNIPIRTEEGRR-------------------------IRRAFVAPEGKKL 816 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R+LA +A +AFE G D++ T + F VA Q+T D R K + Sbjct: 817 ISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTIN 876 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ A Sbjct: 877 --------------FGIIYGIS------------------------------AFGLADRL 892 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 K + ++ + + + E G Sbjct: 893 GIGREEASAFIKQYFERFPGIRDY---IDTTKRSCREKGYVTTL---------------- 933 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 GR Y + +N + R+ +Q + DI+ M Sbjct: 934 -------FGRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTR 977 Query: 617 ATKAG------YDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWA--KGLPLKAEG 667 A ++L VHDE+V E PD + ++ +M P+ A +PL E Sbjct: 978 MEDALEAKKLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEA 1037 Query: 668 YESKRY 673 + + Sbjct: 1038 RAAGNW 1043 >gi|282547321|gb|ADA82378.1| putative DNA polymerase [Escherichia phage K1ind1] Length = 698 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 235/695 (33%), Positives = 327/695 (47%), Gaps = 57/695 (8%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALE-----NTDVTIVAHNS-YFERTVLKACFNLD 87 A+ FDD PV++WDC + MP L AL N+ + +V HN F+R ++K C+ D Sbjct: 8 AYAFDDEPVQVWDCTNGSDMPGDLHRALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFD 67 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ--KMEEGKELIARFCKGETHECLYDR 145 IP+ I T++ A + LP +L A+ E L +S+ K + GK LI RF K R Sbjct: 68 IPVSNTIDTMIWAFRHALPGSLDALCEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRR 127 Query: 146 -NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVA 202 H + W LF +Y D+T RE+F +L S E + LDQ INDRG+ VDVA Sbjct: 128 YTAETHPDEWALFIKYAVSDITAMREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVA 187 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262 LA + V+ + +L +E + G ++ L L+ + + ++T Sbjct: 188 LAEAAIEAVEKHKAQLQEEAQRKYGGSLTGKDFLPILRELAPAH---RIHNAQKSTL-ND 243 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L ++ L A + R+ A+ +A K N L+ +SD R RG +Q+ GA RT R++G Sbjct: 244 LLADDDLPDDASAIIEMRLGAASTASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGK 303 Query: 323 VFPPQNLPRPSRSHEELDQIITHL-PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 F PQNL R +ELD+ I+ L D ++ + VRSC+I G K VVAD Sbjct: 304 GFQPQNLARGYYHDDELDKGISALLKGRAHRRFDVAKLTASTVRSCIIPETGHKFVVADY 363 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA---QVTKDQRAIGKVMELA 438 + +E R LAW+AGE+ L F G D+Y T + F + P + KD R IGK EL Sbjct: 364 SNVEGRGLAWLAGEETALDTFRAGLDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELG 423 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ------------ 486 LGY GG AF + A GL+L A + W W + Sbjct: 424 LGYAGGVGAFVQFAKNLGLDLVDMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGE 483 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 ++ I D + C+ +K+ WR+ H W ++ A I N R V Sbjct: 484 KDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGV 543 Query: 547 PLVYM--------KKDKNNLILMLPSGRSLVYR------------------DVGNNRSYL 580 K L + LPSGR + Y +V Sbjct: 544 KFSRNVETDNNGNKVAGWWLRMTLPSGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGE 603 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 N TRQ +YTY GKL EN QA+ RD+LA ++N GY IVL VHDEI+CETPD Sbjct: 604 NQLTRQWGFQYTYSGKLVENCTQALCRDLLANALLNVEANGYPIVLHVHDEIICETPDLP 663 Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E+N + L LM P WA+G PL AEG E KRY K Sbjct: 664 EYNVAELERLMCELPEWAEGFPLVAEGAEMKRYAK 698 >gi|126640679|ref|YP_001083663.1| DNA polymerase I [Acinetobacter baumannii ATCC 17978] Length = 879 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 195/705 (27%), Gaps = 167/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 ID ET S ++ F+ FD H Sbjct: 305 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYIPLAHNYENAPQQLNRE 354 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + +K LEN V + H+ ++ + +++ + +++ + Sbjct: 355 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 412 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V L E + K ++ + Y D VT Sbjct: 413 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 460 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217 +++ L EL + I G +D A L+ Sbjct: 461 YRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMED 520 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+ + + + +++ LF + G+ T +T + VL P Sbjct: 521 LENQAMEIAG-ETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLT 577 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + +R ++ + L+E ++D T + TGR S QN+P Sbjct: 578 EIILEHR-GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 635 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + I +R IA EG+ L+ AD + IE R++A + Sbjct: 636 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 671 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + + AF+ G+D++ T A +A VT DQR K + Sbjct: 672 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 717 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ F + K + Q+ Sbjct: 718 LYGMSEFGLIRQ------------------------------LGFTREESQNYIKQYFQR 747 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + E Q + GR L D+ Sbjct: 748 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 781 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629 + + R Q + DI+ M+ K ++L VH Sbjct: 782 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 832 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + +M S +PL E + K + Sbjct: 833 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 875 >gi|226954287|ref|ZP_03824751.1| DNA polymerase I [Acinetobacter sp. ATCC 27244] gi|226834958|gb|EEH67341.1| DNA polymerase I [Acinetobacter sp. ATCC 27244] Length = 921 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 111/706 (15%), Positives = 196/706 (27%), Gaps = 169/706 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 ID ET + ++ F+ FD H HD Sbjct: 347 DHFAIDTETTNLD----------YRIAELVGFSVAFDAHDAYYVPVAHDYEGAPEQLNRE 396 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + + +K LEN V + H+ ++ + + I + T++ + Sbjct: 397 HVLEQIKPILENEQVKKIGHHLKYDAHIFANH-GITIQ-GWYFDTMLASYVLNAAATRHG 454 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V L E + K ++ + Y D VT Sbjct: 455 MDDVARVY------------LSHLTTTFEQIAGKGAKQKSFNQIELEVAAHYAAEDAHVT 502 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217 +++ L EL + I G +D A L+ Sbjct: 503 YRLYEVLSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLSVEFSETMQT 562 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+ + L + +++ LF GL T +T + +L P A Sbjct: 563 LENQATELAG-EAFNIASPKQVGEVLFDRLGLKGGKKTATGQYSTSESILEKI--EHPLA 619 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRP 332 + +R ++ + LVE + D R + A + TGR S QN+P Sbjct: 620 EVILEHR-GLAKLKNTYTDRLVEQSH-DSTHRVHTSYHQALTATGRLSSTDPNLQNIPIR 677 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +R IA EG+ L+ AD + IE R++A Sbjct: 678 TPIGR-------------------------QIRRAFIAPEGRVLLAADYSQIELRLMAHF 712 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + + AF+ G+D++ T A + VT DQR K + Sbjct: 713 SQDDALVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNF--------------G 758 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ F + Q Sbjct: 759 LLYGMSEFGLTRQ------------------------------LGFTREESRSYIARYFQ 788 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ V + Q + + GR L D Sbjct: 789 RYPGVLDYMERTRQIARE--------------------------QGFVETILGRRLYTPD 822 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTV 628 + N + R Q + DI+ M+ K ++L V Sbjct: 823 ILANNKMIKQA---AERAAINAPL------QGSAADIIKLAMIAVDKILPKDQAKLLLQV 873 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E +T + +M S +P E + + + Sbjct: 874 HDELVFEADETIADELSKQIAEVMQSVLD--ISVPFVVEVGQGQNW 917 >gi|171057747|ref|YP_001790096.1| DNA polymerase I [Leptothrix cholodnii SP-6] gi|170775192|gb|ACB33331.1| DNA polymerase I [Leptothrix cholodnii SP-6] Length = 934 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 117/705 (16%), Positives = 202/705 (28%), Gaps = 168/705 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + ID ET S + +I +F HD + Sbjct: 359 VAIDTETDSLDPMR----------ARIIGISFAVQPLEAAYVPVGHDYPGAPDQLPLDEV 408 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKA 111 L+ LE+ V N ++ V + + + T++ + P L + Sbjct: 409 LARLRPWLEDAGTRKVGQNIKYDSHVFANH-GVTVRGYA-HDTMLESYVLEAHKPHGLAS 466 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + L E P A Y D +T ++ Sbjct: 467 LADRH------------LGRSGINYEDLCGKGAGQIPFSHVAVDQASTYSGEDSEMTLQV 514 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E + I G +D + + + L+Q Sbjct: 515 HQTLWPQLEAEPRLRELYETIEMPSAEVLVRIERNGVLIDAGVLARQSHQLAQRMHTLEQ 574 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQV 276 E ++ + +++ LF + GL ++ T +T + VL P ++ Sbjct: 575 EAHAIAGQP-FNMSSPKQIGEILFTKLGLPVKKKTASGAPSTDEEVLQELAADYPLPARI 633 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 +R ++ + L +N GR+ A TGR S QN+P + Sbjct: 634 LEHR-SLAKLKGTYTDKLPLMVNPSTGRVHTNYAQAVA-ITGRLSSNDPNLQNIPIRTAE 691 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 VR +A+ G KLV AD + IE R++A ++G+ Sbjct: 692 GRR-------------------------VREAFVAAPGHKLVSADYSQIELRLMAHISGD 726 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 LKAF G D++ T A FN+A A VT +Q Sbjct: 727 ANLLKAFADGMDVHRATAAEVFNIAAADVTSEQ--------------------------- 759 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + NF A A + + ++ Sbjct: 760 -----------------RRYAKTINFGLIYGMGAFGLAASLGIEQKAARDYIERYFARYP 802 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V +E Q + GR +V ++ Sbjct: 803 DVKRYMDETKAGAAQ--------------------------LGHVETLFGRRIVLPEIKG 836 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629 R+ +Q + D++ M+ KA +++ VH Sbjct: 837 GNGPRKAA---AERQAINAP------MQGTAADLIKLAMIAVQKAIDDEGRASKMIMQVH 887 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E P+ + A L LM +PL AE E + Sbjct: 888 DELVLEVPEAELGWAREALPRLMAGVAQ--LKVPLVAEVGEGANW 930 >gi|160898852|ref|YP_001564434.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1] gi|160364436|gb|ABX36049.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1] Length = 704 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 222/702 (31%), Positives = 329/702 (46%), Gaps = 33/702 (4%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L++D ET S DL + G +YAE +LFA+ D P +WDC M L A+++ Sbjct: 5 LWLDRETWSERDLKEVGTARYAEVAEDLLFAYAIGDGPARVWDCTA-EEMHDELYHAMDD 63 Query: 64 TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL-- 118 D AHN++F+RT+ I RW C++ +A S+ LP L + LK+ Sbjct: 64 ADSEAWAHNAFFDRTIHNGPAQAHLPRIADERWRCSMAMALSHALPGGLADLCRVLKVPA 123 Query: 119 SSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K+ +GK+L+ F + + R + H W F +Y D+T RE +R+ Sbjct: 124 DMAKLADGKKLVRLFTQPQPDNRKVRRATRLTHPAEWERFKQYAANDITAMRECVRRMPA 183 Query: 178 LSSKE--QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + W+LDQ IN RG+ VD AL + E+ ++ L+ G + Sbjct: 184 WNWDASAIAEWHLDQRINQRGFQVDQALTRAGARAAVEEKARIATRFAQLSGGQ-FTPGQ 242 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 EK + +L G L++ T +V+ + L ++ + +++++ K L Sbjct: 243 REKFRVYLGQRLGYELDNTQAGTF-QVMLRDPGLPADVREMIELAIASNKTSTAKYAALD 301 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLPTSITS 352 A++ DGR RG LQF GASRT RW+G +F PQNLP E+ + + T Sbjct: 302 PAVSPDGRFRGGLQFAGASRTRRWAGRLFQPQNLPSRGLPSAEVIEDYIEHLKMGTHALF 361 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 + + + + +R CV+A+ GKKLVVADL+ IE RVLAW+A E+WKLKAF + Sbjct: 362 FDNLMLLGAAALRGCVVAAPGKKLVVADLSNIEGRVLAWIAREEWKLKAFREYDAGTGPD 421 Query: 413 YARSFNVAPAQVTKDQRAI------GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 V+ GKV +LA GYQGG +Q A + GL + F + Sbjct: 422 LYNITAVSIIGGDPWNVEKKNRNAFGKVPDLASGYQGGVAGYQTFARSYGLKMADFWDTI 481 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + + A E D A E K AWR +H S+ W L Sbjct: 482 QQMVPAQHVAKAWENLASWGHPQLESLEIDEIEWVASETCKLAWRARHPATSKFWYALGG 541 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG------------ 574 A + I N ++ + + L++ LPSGR L Y + Sbjct: 542 AAKDAIRNPGSVFTAGPFIKLRTVSHRGQKWLVVRLPSGRFLTYFEPHIVGQGRDETIAY 601 Query: 575 -NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 S TTRQ R +T+GGK+T N Q ++RDILA M A GY VL+VHDE + Sbjct: 602 WGEASEEGKTTRQWVRVFTHGGKMTGNCCQTIARDILAPSMAVAENRGYLPVLSVHDEAL 661 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E PDTD+F A+ L ++ +NP+WA LPL A G+E+ RY+K Sbjct: 662 TEVPDTDDFTAAGLVEILATNPAWAPDLPLAAAGFEAYRYKK 703 >gi|49473694|ref|YP_031736.1| DNA polymerase I [Bartonella quintana str. Toulouse] gi|49239197|emb|CAF25513.1| DNA polymerase I [Bartonella quintana str. Toulouse] Length = 968 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 104/713 (14%), Positives = 210/713 (29%), Gaps = 174/713 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------- 51 D ET S L ++ F+ H Sbjct: 382 AFDTETTSLDPL----------QAKLVGFSLALQPGKAAYVPLEHFEGGGDLLGGGRIVG 431 Query: 52 -----VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-- 104 +LK LE+ V + N ++ V+K + I + T++L+ + Sbjct: 432 QIETRKALTLLKPILEDQAVLKIGQNIKYDWLVMKQY-GIVIRC--FDDTMLLSYALDAG 488 Query: 105 -LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 L + A+ E G + IA + + + + Y Sbjct: 489 ALTHNMDALSERW--------LGHKPIAY----KDLTHNGKKITSFAQVDLKQATLYAAE 536 Query: 164 DVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 D +T +++ L+P ++ L + + +RG VD + L+ + Sbjct: 537 DADITLRLWQVLKPQLVARGMTKVYERLDRPLVEVLAKMEERGILVDRQILLRLSGELAQ 596 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL 269 L++E+ L + ++L LF + L T++ T + L Sbjct: 597 AAFILEEEIYQLAG-EKFNLASPKQLGGILFGKMSLPGGTRTKSGQWSTSAQTLEELAAE 655 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 + + + ++ + L + S T L + TGR S QN+ Sbjct: 656 GHILPRKIIDWRQLAKLKSTYADALPSYILSKTGRIHTNYSLAITSTGRLSSSEPNLQNI 715 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P + + +R+ IA +G L+ AD + IE R+L Sbjct: 716 PVRTTEGRK-------------------------IRTAFIAPKGHMLLSADYSQIELRIL 750 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A +AF G+D++ T ++ F VA + D R K + Sbjct: 751 AHIADIIALKEAFAQGQDIHAITASQMFGVAIEGMNSDIRRRAKAIN------------- 797 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 G++ A + + Sbjct: 798 -FGIIYGIS------------------------------AFGLANQLGLSRQEASHYIQL 826 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + ++ + + N + GR + Sbjct: 827 YFERFPGIKDYMEMTKNFA--------------------------CRNGYVETIFGRRIH 860 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYD 623 Y ++ R +Q + DI+ M+ K Sbjct: 861 YPEIKAANL---QVRSFNERAAINAP------IQGSAADIIRRAMIQMENALEKEKLSAK 911 Query: 624 IVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + E +++ +M + P + +PL+ + ++ + Sbjct: 912 MLLQVHDELIFEVPEDESERTMALVKKVMENATMPVLSLSVPLEVKVMAAQNW 964 >gi|83313310|ref|YP_423574.1| DNA polymerase I [Magnetospirillum magneticum AMB-1] gi|82948151|dbj|BAE53015.1| DNA polymerase I [Magnetospirillum magneticum AMB-1] Length = 928 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 110/715 (15%), Positives = 196/715 (27%), Gaps = 178/715 (24%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-------------- 51 D ET L ++ + +H P Sbjct: 343 FDTETTGLDPLR----------ARLVGVSLAVAPGRACYIPVLHAPAQAQGDLLGGPSTD 392 Query: 52 --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 LK L + V V HN ++ V+ + + + T++L+ + Sbjct: 393 APQIIPAAETLARLKPLLADPSVLKVGHNIKYDMQVMAMQ---GLAVEPFDDTMLLSYAL 449 Query: 104 GL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 L + + G I R +Y Sbjct: 450 DGASHGHGLDELCL--------LHLGHANIPF----SEVCGSGRNQVTFDRVPLDKARDY 497 Query: 161 CKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T + L+P + E+ L + + G VD A L++ Sbjct: 498 AAEDADMTLRLHALLKPRLLSERMVSVYETLERPLVPVIAAMERDGIKVDRAQLMALSED 557 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266 T+L+ E+ +L G + ++L LF L T+T T VL Sbjct: 558 FGRRLTELETEVIALNNGEAFNLGSPQQLGKVLFETLNLPGGKKTKTGQWATGADVLEEL 617 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 L ++ + R S+ + LV +N T L A+ TGR S Sbjct: 618 APLHALPARLLDWRQ-LSKLKGTYTDALVAQINPATGRVHTSYSLAATTTGRLSSSDPNL 676 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P + + +R +A GKKLV AD + IE Sbjct: 677 QNIPIRTEEGRK-------------------------IRHAFVAEPGKKLVSADYSQIEL 711 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A +A AF G D++ T ++ F V + R K + Sbjct: 712 RLVAHVAEIAGLRDAFAHGADIHAITASQVFGVPLDGIDPALRRRAKAINF--------- 762 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ A + Sbjct: 763 -----GIIYGISAFGLAAQ------------------------------LGIPQGEAKAY 787 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 +A+ ++ + + + GR Sbjct: 788 IEAYFARYPEIRAYMERTKEEARD--------------------------QGFVTTLFGR 821 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 + + + + R G +Q + DI+ M+ A L Sbjct: 822 KVFTPGIKDKNGAMR---AFAERAAINGP------IQGGAADIIKRAMIRLPAALAAAGL 872 Query: 627 ------TVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 VHDE+V E P+ + +++ +M + S +PL E + + Sbjct: 873 SARLLLQVHDELVLEAPEAEADATVAVVKQVMEAAAS--LSVPLLVEAGIADTWG 925 >gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633] gi|260365931|ref|ZP_05778425.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030] gi|260877781|ref|ZP_05890136.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034] gi|260895569|ref|ZP_05904065.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466] gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633] gi|308088487|gb|EFO38182.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466] gi|308089919|gb|EFO39614.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034] gi|308113417|gb|EFO50957.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030] Length = 931 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 103/703 (14%), Positives = 197/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F D+ HD + Sbjct: 355 AFDTETDSLDYMV----------ANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVL 404 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 + LK LE+ V N ++ +VL +++ ++ T++ + Sbjct: 405 EQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKY-DTMLASYVYNSVGGKHDMDS 462 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ Y D VT + Sbjct: 463 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHN 512 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL ++ L + I G +D + + +L+Q+ Sbjct: 513 RLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLEELEQKA 572 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + GL T +T + VL P + Sbjct: 573 YEI-AEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPLPKLILE 631 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 632 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 690 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 691 -------------------------IRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQAL 725 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V+ QV+ +QR K + G++ Sbjct: 726 LDAFRDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVN--------------FGLIYGMS 771 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 772 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 801 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + A + I GR L ++ + Sbjct: 802 QYMEDTRSAA--ADKGYVETIF------------------------GRRLHLPEIKSRNG 835 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631 + R +Q + DI+ + M+ +++ VHDE Sbjct: 836 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 886 Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V + S + LM S +PL AE + Sbjct: 887 LVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 927 >gi|262404847|ref|ZP_06081401.1| DNA polymerase I [Vibrio sp. RC586] gi|262348931|gb|EEY98070.1| DNA polymerase I [Vibrio sp. RC586] Length = 938 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 102/703 (14%), Positives = 202/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ + + HD + Sbjct: 362 AFDTETDSLDYMV----------ANLVGVSCAVAEGEAAYIPVAHDYLDAPQQLDREWVI 411 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 412 AQLKPLLEDESKAKVGQNLKYDASVIARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 469 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ + +Y D VT + + Sbjct: 470 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQ 519 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G ++ L +Q + + +L+++ Sbjct: 520 RISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMINDMLLSAQSQEIALRLDELEKKA 579 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 580 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 638 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N + T + TGR S QN+P + Sbjct: 639 YR-GLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 697 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 698 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 732 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 733 LDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GLIYGMS 778 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 779 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 808 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + + GR L ++ + Sbjct: 809 QYMEDTRSRAAE--------------------------LGYVETIFGRRLHLPEITSRNG 842 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 843 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDE 893 Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V + S + LM S A +PL AE + Sbjct: 894 LVFEVEESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 934 >gi|212499741|ref|YP_002308549.1| DNA polymerase [Bacteriophage APSE-2] gi|238898732|ref|YP_002924413.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|211731710|gb|ACJ10198.1| DNA polymerase [Bacteriophage APSE-2] gi|229466491|gb|ACQ68265.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 993 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 216/613 (35%), Positives = 326/613 (53%), Gaps = 26/613 (4%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 LF D ET S I + CG +YAE+ ++LFA+ ++ PV++WD D MP LK ++ Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63 Query: 64 TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL--SS 120 +++ V HN F+ +LK N+D+P+ R TLV A ++GLP AL + + + Sbjct: 64 SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123 Query: 121 QKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K +EGK LI+ CK R H E W+ F +Y D+ REI++ L + Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183 Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T QR ++ + P ++ + R+++ ++ K L+++ Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRIND-PDIPPDLRELLSVRLQSCTTSTSKYKALLKS 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 +++DGRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L D Sbjct: 303 VSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDD 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YV 410 +Q+ S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+KAF ++ Y Sbjct: 363 IMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YAR+FN+ P VTKDQR IGKVMEL LGY GG AF A GL+L+ A + Sbjct: 423 LAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 P +A ++ + E + + + C+ +K+ WR H + W ++ A +Q Sbjct: 483 PPGVKREATSWYQKSVETDKTYGLSEKIFVN-CDSLKRMWRNAHPQTVSFWYDIEDAVKQ 541 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR---SYLNT--TTR 585 I++ ++ + +++DK L + LPSGRSL Y +Y+ T +R Sbjct: 542 AIQSPGIAFKCRK-----LSVRRDKGWLRICLPSGRSLCYPSARIENGQITYMGTNPYSR 596 Query: 586 QLTREYTYGGKLT 598 + R TYGGK Sbjct: 597 KWERLKTYGGKSC 609 Score = 97.5 bits (241), Expect = 8e-18, Method: Composition-based stats. Identities = 44/78 (56%), Positives = 54/78 (69%) Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657 ENI QA +RD+LA M KAGY+IVLTVHDEI+ E PDT +F+A L L++ N W Sbjct: 915 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 974 Query: 658 AKGLPLKAEGYESKRYRK 675 A LPL A G+E+ RYRK Sbjct: 975 AWDLPLSANGFETYRYRK 992 >gi|154707059|ref|YP_001423457.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111] gi|154356345|gb|ABS77807.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111] Length = 902 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 110/704 (15%), Positives = 201/704 (28%), Gaps = 161/704 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 D ET + ++ +F H HD Sbjct: 324 KVFAFDTETTDFNAI----------QAKLVGVSFAVSPHEAAYVPLWHDYTGAPAQLDKE 373 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111 + + LK LE+ + TI+ N ++ VL L I + TL+ + S Sbjct: 374 EVLRELKPLLEDPNKTIICQNLKYDAEVLAK-EGLTIR-AKTYDTLLASYVLNSSSTRHD 431 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + K L K E + + Y D VT ++ Sbjct: 432 L---------NTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDADVTLQL 482 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +L PL E L + + RG VD A+ + + L+Q Sbjct: 483 HHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSIELGGRIALLEQ 542 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+T L+ E L + T +T + VL P + Sbjct: 543 QAYKLAG-REFNLSSPKQLQTILYEELKLPIFKKTPGGQPSTAENVLQDLALDYPLPKVI 601 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R ++ + L ++ R T + TGR S QN+P + Sbjct: 602 LEHR-SLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEG 660 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + +R IA G ++V AD + +E R++A ++ + Sbjct: 661 RK-------------------------IRRAFIAPPGFQMVAADYSQVELRIIAHVSKDP 695 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +KAF+ D++ T A F V QVT +QR K + G Sbjct: 696 SLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF--------------GLLYG 741 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + + +++ + Sbjct: 742 MSSFGL------------------------------GRQLGIGRDLAQEYIDIYFKRYPK 771 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR + D+ + Sbjct: 772 VHEYMQKIRIVAFT--------------------------QGYVETLFGRRVYLPDIHAS 805 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630 R R +Q + DI+ M+ + +++ VHD Sbjct: 806 NM---QRRRAAERAAINAP------MQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHD 856 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E + D + M A +PL + + Sbjct: 857 ELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVDVGVGGNW 898 >gi|329956362|ref|ZP_08296959.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056] gi|328524259|gb|EGF51329.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056] Length = 952 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 99/698 (14%), Positives = 201/698 (28%), Gaps = 156/698 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58 L ID ET + + ++ +F ++ + + L+ Sbjct: 380 ILSIDTETTGTEPM----------EAELVGMSFSDAENRAYYVPVPANRDEALKIVNELR 429 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EN + V N ++ VL+ + + + T++ L+ Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVK-GKLFDTMLAHYVLQP---------ELRH 478 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 + + E E K Y D VT ++ LE Sbjct: 479 NMDYLAEIYLQYQTIHIDELIGARGKNQKNMRDLPAEDVYRYACEDADVTLKLKNVLEKE 538 Query: 179 S----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E L + I G +D ++ + ++++E+ +L G Sbjct: 539 LKEQSAEHLFYEIEMPLVPVLVNIESNGVRIDTEALRQSSEHFTLRLQEIEKEIYALAGG 598 Query: 229 LVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + +++ LF + T+T T + VL S + ++ R Sbjct: 599 ETFNIASPKQVGEVLFDRLKIVDKAKKTKTGQYVTSEEVLESLRSKHAIIGKILEYR-GL 657 Query: 284 SRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + ++ L + +N GR+ + + TGR S QN+P +E Sbjct: 658 KKLLSTYIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIPIRDEDGKE---- 712 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R I +G + AD + IE R++A ++ ++ + AF Sbjct: 713 ---------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKNMIDAF 751 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 +G D++ T A+ + V VT D R K + G+++ Sbjct: 752 LSGYDIHAATAAKIYKVDINDVTADMRRKAKTANFGII--------------YGISVFGL 797 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + + + + + +V E + Sbjct: 798 AER------------------------------MNVPRQEAKELIDGYFETYPQVKEYMD 827 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 Q + N + R D+ + + + Sbjct: 828 RSIQVARE--------------------------NGYVETIFHRKRFLPDINSRNAVVRG 861 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636 R +Q + DI+ M ++L VHDE+ Sbjct: 862 Y---AERNAINAP------IQGSAADIIKVAMSLICQRLQSNNLKAKMILQVHDELNFSV 912 Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 P+ ++ + M + +PLKA+ K + Sbjct: 913 PEAEKEIIQKIVIEEMERA--YRMLVPLKADCGWGKNW 948 >gi|297242717|ref|ZP_06926655.1| DNA polymerase I [Gardnerella vaginalis AMD] gi|296888928|gb|EFH27662.1| DNA polymerase I [Gardnerella vaginalis AMD] Length = 560 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 178/611 (29%), Positives = 276/611 (45%), Gaps = 76/611 (12%) Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHEC 141 L + W CT++ + + GLP +L++VG L L QK+ EGK LI FC Sbjct: 5 GLFLNPCSWHCTMIWSATLGLPMSLESVGAVLGLDKQKLTEGKNLIKYFCLPCNPTKVNG 64 Query: 142 LYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYC 198 RNK H E W LF Y K DV V I ++L P+ + +YLDQTINDRG Sbjct: 65 GRTRNKYFHDKEKWELFKSYNKRDVEVEMSIQEKLSLFPVPDFLWQEFYLDQTINDRGIE 124 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 +D + ++ +T L EL+ +T + + + ++++WL GL +E L + Sbjct: 125 IDSLFVESAIKLDQEVKTHLMSELKHVTG--LENPNSVLQMRSWLKEH-GLEMESLGK-- 179 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 + V K + + +V R + ++S+V K + A D R RG +F GA+RTGR Sbjct: 180 -KEVAKELKTVGKELAEVLRLRQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGR 238 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITH---LPTSITSDPDPLQIISDCVRSCVIASEGKK 375 ++G + QNLP+ + + + D +S +R+ I G K Sbjct: 239 FAGRLVQLQNLPQNHLPDLAEARSLVKQGNVEALEMLYEDIPDTLSQLIRTAFIPRTGFK 298 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGK 433 +VAD + IEARVLAW+AGE+W+++ F G+D+Y ++ ++ F+V + R GK Sbjct: 299 FIVADFSAIEARVLAWLAGEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGK 358 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + ELALGY G A + M A Sbjct: 359 IAELALGYGGSVGALKAMG----------------------------------------A 378 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 ++ + + AWR+ + V+ LW ++ +A +Q + ++ + Sbjct: 379 LDMGLTEEELQPLVDAWRKSNPMVTTLWWDVDRAVKQCVHEHISVRT------HNIVFTY 432 Query: 554 DKNNLILMLPSGRSLVYRDVG-NNRSYLN--------TTTRQLTREYTYGGKLTENIVQA 604 LI+ LPS R L Y Y +T++ R +YG K ENI QA Sbjct: 433 KSGFLIIKLPSKRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLESYGPKFVENITQA 492 Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLK 664 ++RDIL M Y IV VHDE + ET + + LM P WA+GL L+ Sbjct: 493 IARDILLYAMQTL--KEYRIVAHVHDEAIIETDKN--VSVQSVCELMGRTPPWAEGLVLR 548 Query: 665 AEGYESKRYRK 675 A+GYE + Y+K Sbjct: 549 ADGYECEFYKK 559 >gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3] gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3] Length = 930 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 102/703 (14%), Positives = 195/703 (27%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F D+ HD + Sbjct: 354 AFDTETDSLDYMV----------ANLVGLSFATDEGIAAYVPVAHDYLDAPQQLDRDWVL 403 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +VL +++ + T++ + Sbjct: 404 AQLKPILEDEAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDS 461 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ Y D VT + Sbjct: 462 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIELDEASPYAAEDADVTLRLHN 511 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL ++ L + I G +D + + +L+Q+ Sbjct: 512 RLFANIEQDEKLKTVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLDELEQKA 571 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + GL T +T + VL P + Sbjct: 572 YEI-AEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKLILE 630 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 631 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 689 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +AS G K++ D + IE R++A ++G+Q Sbjct: 690 -------------------------IRQAFVASTGYKILAVDYSQIELRIMAHLSGDQAL 724 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V+ V+ +QR K + G++ Sbjct: 725 LDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVN--------------FGLIYGMS 770 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 771 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 800 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + A + GR L ++ + Sbjct: 801 QYMEDTRSAA--------------------------SEQGFVETIFGRRLHLPEIQSRNG 834 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631 + R +Q + DI+ + M+ +++ VHDE Sbjct: 835 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 885 Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V + S + +LM S +PL AE + Sbjct: 886 LVFEVEESSLSEIESKVQNLMESAAE--LKVPLVAEAGHGDNW 926 >gi|325124582|gb|ADY84105.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter calcoaceticus PHEA-2] Length = 923 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 108/705 (15%), Positives = 197/705 (27%), Gaps = 167/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 ID ET S ++ F+ FD H Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRD 398 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + +K LEN V + H+ ++ + +++ + +++ + Sbjct: 399 QILAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 456 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V L E + K ++ + Y D VT Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217 +++ L EL + I G +D A L+ Sbjct: 505 YRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEG 564 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+ + + + +++ LF + G+ T +T + VL P A Sbjct: 565 LENQAMEI-ADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLA 621 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + +R ++ + LVE ++D T + TGR S QN+P Sbjct: 622 EIILEHR-GLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + I +R IA EG+ L+ AD + IE R++A + Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF+ G+D++ T A +A VT DQR K + Sbjct: 716 QDEALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ F + K + Q+ Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTRQESQNYIKQYFQR 791 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + E Q + GR L D+ Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629 + + R Q + DI+ M+ K ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + +M S +PL E + + + Sbjct: 877 DELVFEADQNIADELSKQIATVMESVVK--ISVPLVVEVGQGQNW 919 >gi|254515980|ref|ZP_05128040.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3] gi|219675702|gb|EED32068.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3] Length = 907 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 106/702 (15%), Positives = 194/702 (27%), Gaps = 163/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 D ET S Y E ++ +F + H + Sbjct: 332 AFDTETTSLN---------YME-AEIVGLSFAVERGEAAYVPLAHSYPGTPAQLDRDAVL 381 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113 LK LE+ D + N ++ +VL DI + T++ + Sbjct: 382 AALKPLLEDPDKAKLGQNLKYDASVLARY---DIAMQGIAFDTMLESYVLDSTGT----- 433 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + K L E + + Y D VT + + Sbjct: 434 ---RHDMDSLAL-KYLGRSTTHFEDVAGKGAKQITFDKVGIEEAAAYAAEDAEVTLALHE 489 Query: 174 RLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E L + + G +D ++ + L++E Sbjct: 490 TLWPKLQETPSLASVLTDIELPLVPVLSRMERCGALLDEERLWEHSRELGQRLQALEEEA 549 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 ++ V + ++L LF + L + T +T + VL P + Sbjct: 550 HNVAGQ-VFNLGSPKQLGQILFEKLELPVLKKTPKGAPSTAEEVLQELALDYPLPKLLIE 608 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R S+ + L +NS T + TGR S QN+P + Sbjct: 609 HR-GLSKLKSTYTDKLPGMINSHTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRR 667 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA+EG ++V AD + IE R++A ++ + Sbjct: 668 -------------------------IRQAFIAAEGYQIVAADYSQIELRIMAHLSEDPGL 702 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF D++ T A F V V+ +QR K + G++ Sbjct: 703 LAAFRENLDVHSATAAEVFGVPLDSVSGEQRRKAKAINF--------------GLIYGMS 748 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + +R + +++ V Sbjct: 749 AFGLARQLHLD------------------------------RGEAQRYIDVYFERYPGVR 778 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + GR L ++ Sbjct: 779 QYMVRTRALAHE--------------------------QGYVETLFGRRLYLPEINVRNK 812 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 R +Q + DI+ M+ +++ VHDE+ Sbjct: 813 MRQQA---AERTAINAP------MQGTAADIIKMAMLAVDGWIADDGVDAKMIMQVHDEL 863 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E ++ L LM++ A +PL E + Sbjct: 864 VLEVAESQLDPVCDELCRLMSAAADLA--VPLLVEAGRGANW 903 >gi|167626125|ref|YP_001676419.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4] gi|167356147|gb|ABZ78760.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4] Length = 918 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 104/707 (14%), Positives = 215/707 (30%), Gaps = 170/707 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------M 53 + ID ET S Y E ++ +F + HD + + Sbjct: 341 IAIDTETTSLN---------YME-AKLVGISFAVEAGKAAYLPLAHDYIDAPEQLDKAVV 390 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALK 110 + L+ LE+ ++ V N ++ ++ + + + T++ + + Sbjct: 391 FEKLQPLLEDENLKKVGQNLKYDISIFANA-GICL-LGVQFDTMLESYVFNSVASKHNMD 448 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + G + I+ E + ++ + Y D +T Sbjct: 449 DLALKY--------LGHKNISF----EEIAGKGVKQLTFNQISLETAAPYAAEDADITLR 496 Query: 171 IFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLD 219 + + L K EL + I G +D L ++ + + +L+ Sbjct: 497 LHQHLWSRLEKLPELASVFTDIEMPLVNTLSTIERQGVLIDSMLLGQQSEELARKIDELE 556 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 + + + ++L+ F + G + T +T + VL P Sbjct: 557 HKAHEIAGQA-FNLSSPKQLQELFFEKLGYPVIKKTPKGAPSTAEEVLVELALDYPLPKI 615 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R ++ + L +N+ GR+ + A+ TGR S QN+P + Sbjct: 616 ILEHR-SLAKLKSTYTDKLPLMVNAQTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTE 673 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA EGKK++ AD + IE R++A ++ Sbjct: 674 EGRR-------------------------IRHAFIAPEGKKILAADYSQIELRIMAHLSQ 708 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F+V ++VT DQR K + Sbjct: 709 DKGLLTAFAEGKDIHKATAAEVFDVDFSEVTTDQRRRAKAVN--------------FGLI 754 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ A + + + + +++ Sbjct: 755 YGMSAFGLAKQLDI------------------------------PRSEAQSYIDTYFKRY 784 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + E + + GR L + Sbjct: 785 PGVLKYMEETRAIA--------------------------ADLGYVSTLFGRRLYLPAIK 818 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLT 627 + + R +Q + DI+ + M+N +++ Sbjct: 819 DRNAMRRQA---AERAAINAP------MQGTAADIIKKAMINIANWIETETDGEIIMIMQ 869 Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E + + + + LM + + L AE + Sbjct: 870 VHDELVFEVDEAKADSLQAKVCELMAAAAK--LDVELLAEAGIGDNW 914 >gi|328471656|gb|EGF42533.1| DNA polymerase I [Vibrio parahaemolyticus 10329] Length = 930 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 103/703 (14%), Positives = 198/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F D+ HD + Sbjct: 354 AFDTETDSLDYMV----------ANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVL 403 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 + LK LE+ V N ++ +VL +++ ++ T++ + Sbjct: 404 EQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKY-DTMLASYVYNSVGGKHDMDS 461 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ Y D VT + Sbjct: 462 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHN 511 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL ++ L + I G +D + + +L+Q+ Sbjct: 512 RLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLEELEQKA 571 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + GL + T + T + VL P + Sbjct: 572 YEI-AEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGAPSTNEEVLQELALDYPLPKLILE 630 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 631 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 689 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 690 -------------------------IRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQAL 724 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V+ QV+ +QR K + G++ Sbjct: 725 LDAFRDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVN--------------FGLIYGMS 770 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 771 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 800 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + A + I GR L ++ + Sbjct: 801 QYMEDTRSAA--ADKGYVETIF------------------------GRRLHLPEIKSRNG 834 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631 + R +Q + DI+ + M+ +++ VHDE Sbjct: 835 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 885 Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V + S + LM S +PL AE + Sbjct: 886 LVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 926 >gi|262172869|ref|ZP_06040547.1| DNA polymerase I [Vibrio mimicus MB-451] gi|261893945|gb|EEY39931.1| DNA polymerase I [Vibrio mimicus MB-451] Length = 938 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 104/703 (14%), Positives = 203/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54 D ET S + ++ +F + HD + + Sbjct: 362 AFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDRAWVI 411 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 412 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 469 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ + +Y D VT + + Sbjct: 470 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQ 519 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G +D L +Q + + +L+++ Sbjct: 520 RISPLIEQDSKLAQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEKKA 579 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 580 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 638 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 639 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 697 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 698 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 732 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 733 LDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GLIYGMS 778 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 779 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 808 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + + GR L ++ + Sbjct: 809 QYMEDTRSRAAE--------------------------LGYVETIFGRRLHLPEITSRNG 842 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 843 IRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDE 893 Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V + S + LM S A +PL AE + Sbjct: 894 LVFEVEESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 934 >gi|260767538|ref|ZP_05876474.1| DNA polymerase I [Vibrio furnissii CIP 102972] gi|260617438|gb|EEX42621.1| DNA polymerase I [Vibrio furnissii CIP 102972] Length = 932 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 101/703 (14%), Positives = 201/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + HD + Sbjct: 356 AFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYVPVAHDYLDAPQQLDRDWVL 405 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ ++L ++++ T++ + Sbjct: 406 AQLKPILEDAQQAKVGQNLKYDASILARY-DINMQGIA-HDTMLASYVYNSVGGKHDMDS 463 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ Y D VT + Sbjct: 464 LALRFMQHS----------CISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDADVTLRLHH 513 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL PL ++ L + I G ++ L +Q + +L+++ Sbjct: 514 RLLPLLEQDDKLLSVYRDIEMPLVPVLSRIERTGVLINDMLLGAQSQEIAQRLDELEKKA 573 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+T F + L T +T + VL P + Sbjct: 574 FDIAGQ-EFNLSSPKQLQTIFFDQMKLPVIKKTPSGTPSTNEEVLQELALDYPLPAVILE 632 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 633 YR-GLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 691 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G++ Sbjct: 692 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKAL 726 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF+ G+D++ T A ++ QVT +QR K + G++ Sbjct: 727 LEAFQQGKDIHAATAAEILGISIDQVTSEQRRRAKAVNF--------------GLIYGMS 772 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 773 ------------------------------AFGLAKQLGIPRGEAQAYMDTYFERYPGVM 802 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + + GR L ++ + Sbjct: 803 QYMEDTRSTAAE--------------------------QGYVETLFGRRLHLPEITSRNG 836 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY---DIVLTVHDE 631 + R +Q + DI+ + M+ G +++ VHDE Sbjct: 837 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDAWIEAEGAGRVKLLMQVHDE 887 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S A +PL AE + Sbjct: 888 LVFEVEESALSEIESKVQKLMESAA--ALKVPLVAEAGHGDNW 928 >gi|213156072|ref|YP_002318117.1| DNA polymerase I [Acinetobacter baumannii AB0057] gi|301344695|ref|ZP_07225436.1| DNA polymerase I [Acinetobacter baumannii AB056] gi|301595519|ref|ZP_07240527.1| DNA polymerase I [Acinetobacter baumannii AB059] gi|213055232|gb|ACJ40134.1| DNA polymerase I [Acinetobacter baumannii AB0057] Length = 923 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 195/705 (27%), Gaps = 167/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 ID ET S ++ F+ FD H Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRE 398 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + +K LEN V + H+ ++ + +++ + +++ + Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHISANH-GIELK-GWYFDSMLASYVLNAAATRHG 456 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V L E + K ++ + Y D VT Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217 +++ L EL + I G +D A L+ Sbjct: 505 YRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMED 564 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+ + + + +++ LF + G+ T +T + VL P Sbjct: 565 LENQAMEIAG-ETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLT 621 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + +R ++ + L+E ++D T + TGR S QN+P Sbjct: 622 EIILEHR-GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + I +R IA EG+ L+ AD + IE R++A + Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + + AF+ G+D++ T A +A VT DQR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ F + K + Q+ Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTREESQNYIKQYFQR 791 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + E Q + GR L D+ Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629 + + R Q + DI+ M+ K ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + +M S +PL E + K + Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919 >gi|294649387|ref|ZP_06726818.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] gi|292824757|gb|EFF83529.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] Length = 921 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 111/706 (15%), Positives = 196/706 (27%), Gaps = 169/706 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 ID ET + ++ F+ FD H HD Sbjct: 347 DHFAIDTETTNLD----------YRIAELVGFSVAFDAHDAYYVPVAHDYEGAPEQLNRE 396 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + + +K LEN V + H+ ++ + + I + T++ + Sbjct: 397 HVLEQIKPILENEQVKKIGHHLKYDAHIFANH-GITIQ-GWYFDTMLASYVLNAAATRHG 454 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V L E + K ++ + Y D VT Sbjct: 455 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIELEVAAHYAAEDAHVT 502 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217 +++ L EL + I G +D A L+ Sbjct: 503 YRLYEVLSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLSVEFSETMQT 562 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+ + L + +++ LF GL T +T + +L P A Sbjct: 563 LENQATELAG-EAFNIASPKQVGEVLFDRLGLKGGKKTATGQYSTSESILEKI--EHPLA 619 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRP 332 + +R ++ + LVE + D R + A + TGR S QN+P Sbjct: 620 EVILEHR-GLAKLKNTYTDRLVEQSH-DSTHRVHTSYHQALTATGRLSSTDPNLQNIPIR 677 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +R IA EG+ L+ AD + IE R++A Sbjct: 678 TPIGR-------------------------QIRRAFIAPEGRVLLAADYSQIELRLMAHF 712 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + + AF+ G+D++ T A + VT DQR K + Sbjct: 713 SQDDALVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNF--------------G 758 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ F + Q Sbjct: 759 LLYGMSEFGLTRQ------------------------------LGFTREESRSYIARYFQ 788 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ V + Q + + GR L D Sbjct: 789 RYPGVLDYMERTRQIARE--------------------------QGFVETILGRRLYTPD 822 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTV 628 + N + R Q + DI+ M+ K ++L V Sbjct: 823 ILANNKMIKQA---AERAAINAPL------QGSAADIIKLAMIAVDKILPKDQAKLLLQV 873 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E +T + +M S +P E + + + Sbjct: 874 HDELVFEADETITDELSKQIAEVMQSVLD--ISVPFVVEVGQGQNW 917 >gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19] gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19] Length = 921 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 97/698 (13%), Positives = 193/698 (27%), Gaps = 160/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEA 60 D ET L ++ +F ++ + + + A Sbjct: 351 AFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEAAKVVERFSPA 400 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 L+N + N F+ VL+ N+ + T++ + + E Sbjct: 401 LQNPKSLKIGQNIKFDILVLRKY-NVKVA-GPLFDTMIAHYLLNPELRHGMDYLAETY-- 456 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 + +ELI EY D VT ++ P Sbjct: 457 LKYQTVHIEELIG---------PKGKNQLSMRNVPVEQIAEYAAEDADVTLKLKNYFAPE 507 Query: 179 SS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E L Y+ + G +D + + KL+QE+ L Sbjct: 508 LKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEVYELAGT 567 Query: 229 LVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + +++ LF L + T+ +T + VL + P ++ R Sbjct: 568 -EFNINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRSKHPIIGKLLEYR-GL 625 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + ++ L E +N T + TGR S QN+P E Sbjct: 626 KKLLSTYIDALPELINPQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGRE----- 680 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R I AD + IE R++A ++G+ ++AF Sbjct: 681 --------------------IRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPHMIEAF 720 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 ++G D++ T A+ + + +VT D R K G+++ Sbjct: 721 QSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANFG--------------IIYGISVFGL 766 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + + + + + R+ E Sbjct: 767 AER------------------------------LGIPRSESKELIDGYFSTYPRIKEYME 796 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 E + ++ + R D+ ++ + + Sbjct: 797 ESIKVAKE--------------------------KGYVETIFKRKRFLPDINSHNAVVRG 830 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 R +Q + DI+ M+ + ++L VHDE+ Sbjct: 831 Y---AERNAINAP------IQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNI 881 Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PL A+ E + + Sbjct: 882 YKEEAEEVKKIVLEEMENVMK--LQVPLIADCGEGENW 917 >gi|110640023|ref|YP_680233.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406] gi|110282704|gb|ABG60890.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406] Length = 946 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 101/698 (14%), Positives = 199/698 (28%), Gaps = 161/698 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEA 60 D ET S L + ++ A F D + +L+ A Sbjct: 377 CFDTETTSLNAL----------EAELVGLAISFRAKEAYYIPFTSDQIQTQRILDLLQPA 426 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 E + +T V N ++ VLK N I T++ + + E Sbjct: 427 FEKSSITKVGQNLKYDLLVLKKY-NFAIA-GPLFDTMLAHYLLEPEMRHGMDTLAEVY-- 482 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP- 177 + ++LI + + EY D +T +++K P Sbjct: 483 LNYTPVSIEQLIGK---------KGAKQGTMRDVEIEAIKEYAAEDADITFQLYKFFSPL 533 Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + E L + + G +D + ++ E T +++E+ Sbjct: 534 VKDQNLNPLFNEVEMPLSEVLADMELEGVKIDTQALSEFSSLLQTEITAVEKEIYEHAGV 593 Query: 229 LVSSSRCLEKLKTWLFLETGLHL-EDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + ++L LF + L T+T T + VL+ P + + R Sbjct: 594 Q-FNISSPKQLGEILFDKLKLDPNAKKTKTGQYATGEDVLTKLDSDHPILANILDYR-EF 651 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + ++ L + DGR+ + A+ TGR S QN+P + +E Sbjct: 652 QKLKSTYVDALPLLLGKDGRVHTSFNQAVAA-TGRLSSTNPNLQNIPIRTDRGKE----- 705 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R +A + ++ AD + IE R++A + ++ L AF Sbjct: 706 --------------------IRRAFVARDNDHVILSADYSQIELRIMAAFSKDESMLNAF 745 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ TT ++ F V VT D R G++ Sbjct: 746 RKGVDIHSTTASKVFKVPIEDVTADMRRKA--------------KMVNFGIIYGISAFGL 791 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + + + A+ + V + Sbjct: 792 SQRLSI------------------------------PRKEAAEIITAYFTEFPAVKAYMD 821 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + + + GR RD+ + + Sbjct: 822 ACVNSAREVE--------------------------YVETILGRRRFLRDINSRNMTMRG 855 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCET 636 R +Q + D++ M+ +VL VHDE++ + Sbjct: 856 F---AERNAINAP------IQGSAADMIKVAMIRIHDWMKKENLKSKMVLQVHDELLFDA 906 Query: 637 PDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 + + M A +P++ + + Sbjct: 907 HKDEIDLLKTQVEIFMKEAI--ALDVPMEVGMGIGENW 942 >gi|293610426|ref|ZP_06692727.1| DNA polymerase I [Acinetobacter sp. SH024] gi|292827658|gb|EFF86022.1| DNA polymerase I [Acinetobacter sp. SH024] Length = 923 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 108/705 (15%), Positives = 196/705 (27%), Gaps = 167/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 ID ET S ++ F+ FD H Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRD 398 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + +K LEN V + H+ ++ + +++ + +++ + Sbjct: 399 QILVQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 456 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V L E + K ++ + Y D VT Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217 +++ L EL + I G +D A L+ Sbjct: 505 YRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEG 564 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+ + + + +++ LF + G+ T +T + VL P A Sbjct: 565 LENQAMEI-ADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLA 621 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + +R ++ + LVE ++D T + TGR S QN+P Sbjct: 622 EIILEHR-GLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + I +R IA EG+ L+ AD + IE R++A + Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + + AF+ G+D++ T A +A VT DQR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ F + K + Q+ Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTRQESQNYIKQYFQR 791 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + E Q + GR L D+ Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629 + + R Q + DI+ M+ K ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + +M S +PL E + + + Sbjct: 877 DELVFEADQNIAEELSKQIATVMESVVK--ISVPLVVEVGQGQNW 919 >gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01] gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01] gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03] gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07] gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22] gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26] gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32] gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12] Length = 933 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 102/710 (14%), Positives = 202/710 (28%), Gaps = 170/710 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 +D ET L ++ F+ H+ + E L Sbjct: 351 ICAVDTETDGLDPLA----------ANIVGFSIATAPGKACYVPLKHEGTLEAPTGEQLA 400 Query: 63 -------------NTDVTIVAHNSYFERTVLKACFNLDIP-IHRWICTLVLARS--NGLP 106 + V + HN+ F+ +L + + I T++++ S GL Sbjct: 401 VDAALKLLAPLLQDDAVLKIFHNAKFDLLILD-HAGIPLSSITAVDDTMLISYSQSAGLH 459 Query: 107 S-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 + + M I+ P + +Y D Sbjct: 460 GQGMDELSA--------MHLSHTPISYDS----VTGTGRNRLPFAQVPVATATKYAAEDA 507 Query: 166 TVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 VT ++ L P E+ L + + G VD A L++ + Sbjct: 508 DVTLRLWHVLHPTLRTNKALVLYEQIERPLSAILADMEKAGIAVDRAELDRLSKDFEARM 567 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTP 271 ++ ++ + ++L LF E GL + +T VL Sbjct: 568 QGMENDIYEAAGRQ-FNIGSPKQLGEILFDEMGLKGGKRGKAGAWSTDSSVLQDLADQGH 626 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + ++ + L+ + R+ + Q + TGR S QN+P Sbjct: 627 DLPARILAWRQLAKLKSTYTDALLRQAGRNDRVHTSFQMAI-TSTGRLSSTDPNLQNIPV 685 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + +R IA GKKL+ AD + IE R+LA Sbjct: 686 RTEEGTR-------------------------IRQAFIAPPGKKLISADYSQIELRLLAD 720 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +A +AF+ G+D++ T + FN+ + R K + Sbjct: 721 VANIPALREAFQLGQDIHARTASEVFNIPLEGMDALTRRRAKAIN--------------F 766 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ + A+ Sbjct: 767 GIIYGIS------------------------------AFGLGKQLGIPAGEARTYIDAYF 796 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ + + + + + ++ P GR Sbjct: 797 ARYPGIRDYMERMREEART--------------------------HGYVLTPFGRRCYVP 830 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGY---DI 624 + + R+ Q + DI+ M+ KAG+ + Sbjct: 831 GIHEKSAARRQY---AERQAINAPL------QGGAADIIKRAMVHLPLALQKAGFGETRM 881 Query: 625 VLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +L VHDE++ ET +++ +++ ++M + A +PL E + + Sbjct: 882 LLQVHDELLFETDESEAEAVAAIIKNVMEAAADLA--VPLVVETGIGQNW 929 >gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp. 'ITI 518'] Length = 924 Score = 412 bits (1059), Expect = e-112, Method: Composition-based stats. Identities = 109/698 (15%), Positives = 203/698 (29%), Gaps = 160/698 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-----DCVHDPVMPQVLK 58 L ID ET S A ++ AF ++ D + + L Sbjct: 355 LAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERLA 404 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116 L V N ++ VL +++P + T+V P L + Sbjct: 405 PILRRAQR-KVGQNLKYDLVVLAQH-GVEVPP-PYFDTMVAHYLIAPEEPHNLDVLARQY 461 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI----- 171 +M ELI K + G Y D + ++ Sbjct: 462 --LRYQMVAITELI----------GSGRDQKSMRDVSIDEVGPYACEDTDIALQLADVLA 509 Query: 172 -----FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + + G C+D + + + ++ E +L+ ++ + Sbjct: 510 AELDRHGLRHIAEEMEFPLIEVLADMERTGICIDRTVLREIGKQLEAELHELEAKIYEVA 569 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L LF + GL T +T + VL P + + R Sbjct: 570 GV-EFNIGSPQQLADVLFKKLGLKPRARTSTGRPSTKESVLQELATQHPLPGLILDWRH- 627 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ ++ L ++ + T + TGR S QN+P + E Sbjct: 628 LAKLKSTYVDGLEPLIHPETGRIHTTFNQTVTATGRLSSSNPNLQNIPVRTEMGRE---- 683 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R + G KL+ AD IE R+LA ++G++ +AF Sbjct: 684 ---------------------IRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAF 722 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G+D++ T AR F V P QVT +QR G++ Sbjct: 723 LEGQDIHTATAARVFKVPPEQVTPEQRRRA--------------KMVNYGIPYGIS---- 764 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + + + +++ V+ Sbjct: 765 --------------------------AWGLAQRLRCSTREAQELIEEYQRAFPGVTRY-- 796 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 LH+ E+ + G GR ++ + + Sbjct: 797 -LHRVVEKARQKGYVETLL-----------------------GRRRYVPNINSRNRAERS 832 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 R +Q D++ M++ ++L VHDE+V E Sbjct: 833 M---AERIA------VNMPIQGTQADMIKLAMVHIYHRLQREGYRAKMLLQVHDELVFEM 883 Query: 637 PDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 P + L M +G+P++ + + Sbjct: 884 PPEEVEPVRQLVEQEMKQALP-REGVPIEVDIGVGDNW 920 >gi|311744979|ref|ZP_07718764.1| DNA polymerase I [Algoriphagus sp. PR1] gi|126577486|gb|EAZ81706.1| DNA polymerase I [Algoriphagus sp. PR1] Length = 941 Score = 412 bits (1059), Expect = e-112, Method: Composition-based stats. Identities = 102/702 (14%), Positives = 217/702 (30%), Gaps = 162/702 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVL 57 L D ET S A + ++ +F + C D + + L Sbjct: 368 DQLCFDTETTSVN----------AMEAELVGISFAYLSGEAYYIPCPADRAETDQILEQL 417 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K +N + + N ++ +LK ++++ + T++ ++ + E Sbjct: 418 KPVFQNEKILKIGQNIKYDLLILKNY-DVEVK-GKLYDTMLAHYLIEPEGKHSMDWLAEQ 475 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + ELI + EY D +T ++ ++L Sbjct: 476 Y--LNYQPVSITELIGK---------KGKNQGNMRDVDVDQVTEYASEDADITLQLKEKL 524 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P E L + + G +D ++ ++ E +++ ++ + Sbjct: 525 DPFLKENLLEKLFYEVENPLINVLTEMEFEGIRIDTKSLAEMSISLEKESKEIENKVYEI 584 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + ++L LF + L + T+T T + +LS A + + R Sbjct: 585 AGVR-FNLASPKQLGDVLFEKLKLDPKAKKTKTGQYATGEEILSKLANEHEIARAILDFR 643 Query: 281 MRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L +N G++ T A+ TGR S QN+P + E Sbjct: 644 QMV-KLKSTYVDALPTMINSKTGKIHTTYNQFVAA-TGRLSSINPNLQNIPIRTERGRE- 700 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398 +R + E L+ AD + IE R++A +G++ Sbjct: 701 ------------------------IRKAFVPRDENHILLAADYSQIELRIMAAFSGDESM 736 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++AF+ G D++ TT A+ F V +VT D R K G++ Sbjct: 737 IEAFKNGRDIHATTAAKIFQVPLEEVTSDMRRKAKTANF--------------GIIYGIS 782 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + T + + A+ ++ V Sbjct: 783 AFGLSQRLSI------------------------------SRTEAKEIIDAYFKEFPAVK 812 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E + + + + GR RD+ + + Sbjct: 813 EYMDRAIEKARN--------------------------DEYVETLLGRRRYLRDINSRNA 846 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632 + R +Q + D++ M++ ++L VHDE+ Sbjct: 847 TMRGF---AERNAINAP------IQGSAADLIKVAMIDVHNWMKKENLKSKMILQVHDEL 897 Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 V + + + LM++ +P++ E + Sbjct: 898 VFDAHKDEVEILKKNIPELMSNAIK--MDVPVEVEVGTGDDW 937 >gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202] gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202] gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60] Length = 930 Score = 412 bits (1059), Expect = e-112, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 206/705 (29%), Gaps = 168/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S L+ ++ + HD + Sbjct: 354 AFDTETDSLDVLS----------ANLVGISCADAPGQACYIPLAHDYLDAPRQLDRQYVL 403 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 L+ LE+ V + N ++ V+ + + T++ + + + Sbjct: 404 ARLQPLLEDEGVAKIGQNLKYDIGVMARY-GITLRGVA-FDTMLESYVLNSVAGRHDMDS 461 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L + E ++ EY D VT ++ Sbjct: 462 LAARH------------LDHKTITFEEIAGKGKGQLTFNQIPLEQAAEYAAEDADVTLQL 509 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +RL P + L + + G +D A+ +Q + V L+Q Sbjct: 510 HQRLWPTLEGESGPSHIFRDIDMPLIPVLSRMERTGVLIDSAILGQHSQELAVRLEALEQ 569 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + S + ++L+ LF + L + T +T + VL+ QV Sbjct: 570 QAHSEAG-EPFNLSSTKQLQAILFEKQQLPVLKKTPGGAPSTNEEVLAELADQGYALPQV 628 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 ++ + L + +N GR+ + + TGR S QN+P S Sbjct: 629 ILEYRTLAKLKSTYTDKLPQMVNPLTGRVHTSYHQAV-TATGRLSSSDPNLQNIPVRSDE 687 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA G ++V AD + IE R++A ++G+ Sbjct: 688 GRR-------------------------IRQAFIAPAGSRIVAADYSQIELRIMAHLSGD 722 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF G+D++ T A F + V+ DQR K + Sbjct: 723 KGLLAAFAAGKDIHRATAAEVFGLPLEAVSADQRRSAKAINF--------------GLIY 768 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + +R + +++ Sbjct: 769 GMS------------------------------AFGLARQLNIGRGEAQRYMDLYFERYP 798 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V Q + + GR L ++ Sbjct: 799 GVLAYMERTRQLA--------------------------SDQGYVETLDGRRLYLPEINA 832 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629 + R +Q + DI+ M+ + +++ VH Sbjct: 833 RNGMRR---KAAERAAINAP------MQGTAADIIKRAMIAVDGWLQEAQPEVRMIMQVH 883 Query: 630 DEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E P++ + LM ++ S A +PLK + + + Sbjct: 884 DELVFEVPESQVEAVVCQVRALMENSLSLA--VPLKVDIGCGENW 926 >gi|50086044|ref|YP_047554.1| DNA polymerase I [Acinetobacter sp. ADP1] gi|49532020|emb|CAG69732.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter sp. ADP1] Length = 920 Score = 412 bits (1059), Expect = e-112, Method: Composition-based stats. Identities = 111/706 (15%), Positives = 195/706 (27%), Gaps = 169/706 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 ID ET S ++ F+ FD HD Sbjct: 346 KRFAIDTETTSLD----------YRVAEMVGFSVAFDAQDAYYVPLTHDYDNAPEQLNRE 395 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL---PS 107 + LK LE+ V + H+ ++ + + + W T++ + Sbjct: 396 QILAQLKPILEDETVHKIGHHLKYDAHIFANH---SVELKGWYFDTMLASYVINSVATRH 452 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 + V L E + K ++ + Y D V Sbjct: 453 GMDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV 500 Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERT 216 T +++ L EL + I G +D + L+ Sbjct: 501 TYRLYEVLAQKLKSAPELENILYNIEMPVARILTGMEEAGIKLDHSFLGQLSVEFTETIL 560 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQ 272 L+ + L + +++ LF + GL T +T + +L P Sbjct: 561 GLENQAIELAG-ESFNVSSPKQVGEILFDKMGLKGGKKTATGQHSTSESILEKV--EHPI 617 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 A + +R S+ + LVE +++ T + TGR S QN+P Sbjct: 618 AEVILEHR-TLSKLKNTYTDRLVEQSHNETHRVHTSYHQALTATGRLSSSDPNLQNIPIR 676 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +R IA EG+ L+ AD + IE R++A Sbjct: 677 GEIGR-------------------------QIRKAFIAPEGRILLAADYSQIELRLMAHF 711 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF+ G+D++ T A N+ +VT DQR K + Sbjct: 712 SQDEALLDAFQHGQDVHRRTAAEVLNIPLEEVTNDQRRQAKAVNF--------------G 757 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ F + K + Sbjct: 758 LLYGMSEFGLIRQ------------------------------LGFTREESQNYIKQYFH 787 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ + E Q + + GR L D Sbjct: 788 RYPGIYEYMQRTRQVALE--------------------------QGFVETILGRRLYTPD 821 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTV 628 + + + R Q + DI+ M+ K ++L V Sbjct: 822 IDARNMMVR---KGAERAAINAPL------QGSAADIIKLAMIEVDKMLPKDQAKLLLQV 872 Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E + L M S +PL E + + Sbjct: 873 HDELVFEVDADLADELAPKLAETMQSVV--NISVPLLVEVGQGLNW 916 >gi|226941896|ref|YP_002796970.1| PolA [Laribacter hongkongensis HLHK9] gi|226716823|gb|ACO75961.1| PolA [Laribacter hongkongensis HLHK9] Length = 932 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 103/703 (14%), Positives = 198/703 (28%), Gaps = 166/703 (23%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQ 55 D ET S + ++ +F H + Sbjct: 359 FDTETDSLDPM----------QARIVGVSFAVTPGEAAYVPLAHVAPGVEPQLDRDRVLA 408 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVG 113 LK LEN V N+ ++R VL + + T+++ + A+ Sbjct: 409 QLKPWLENPAAAKVLQNANYDRHVLANH-GIRLAGVA-DDTMLMDYVLASHERHNMDAMA 466 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 E EL K E R Y D VT + Sbjct: 467 ER------------ELGLATIKYEDICGKGARQIGFAEVDLDTATRYAAEDADVTLRLRD 514 Query: 174 RLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L E + + G +D A +Q++ E ++ E+ Sbjct: 515 VLAGKLDGARDTLYSSIELPTAAVLFAMERTGVLIDRAELARQSQVLGEEMLAIETEVYE 574 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLE------DLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L LF + + + +T + VL + P + Sbjct: 575 LAGQP-FNLNSPKQLSDILFNKLAIDTKGVKKTASGGYSTDESVLEKLAEDYPLPKALLR 633 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L +N D T + TGR + QN+P + Sbjct: 634 YR-GLAKLKSTYTDKLPAMINPDTGRVHTHYSQASVVTGRLASSDPNLQNIPIRTDEGRR 692 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 VR +A G +V AD + IE R++A ++G+ Sbjct: 693 -------------------------VREAFVAPAGSCIVSADYSQIELRIMAHLSGDAGL 727 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF G D++ T + F V V+ +QR K + G++ Sbjct: 728 IAAFREGRDIHRATASEVFGVPLEAVSAEQRRYAKTINF--------------GLIYGMS 773 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A ++ ++ A + + + ++ V Sbjct: 774 AFGLAKSLEIDN------------------------------KAAQTFIERYFARYPGVQ 803 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + +A + + GR L ++ ++ + Sbjct: 804 DYMQRTREAARE--------------------------QGWVETVFGRRLYLPEIRSSNA 837 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 + +Q + D++ M+ + +++ VHDE+ Sbjct: 838 ARRAGAERA---------AINAPMQGTAADLIKLAMIRVADWLQREQLASRLIMQVHDEL 888 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 V E P+ + + L M + A +PL AE + Sbjct: 889 VLEVPEAERERVCAALPQEMAAVAGLA--VPLVAEVGSGANWG 929 >gi|254438732|ref|ZP_05052226.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307] gi|198254178|gb|EDY78492.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307] Length = 941 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 99/715 (13%), Positives = 194/715 (27%), Gaps = 176/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET S ++ ++ + H Sbjct: 355 YVAVDTETTSLNEMR----------AELVGVSLCVTAGEACYIPLTHKSGAADDLFGDDA 404 Query: 51 --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +LK LE+ + + N ++ + K + I + T++++ + Sbjct: 405 LAEGQMDFEECLAILKPMLEDDSILKIGQNMKYDAKIFKR---VGIDVDPIDDTMLMSYA 461 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + + E G I K + +R Sbjct: 462 MNAGLHRHGMDVLSEQY--------LGHTPIP--IKPLLGAGKSAKT--FNRVPVEDAVR 509 Query: 160 YCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T +++ +P E+ L + + G VD ++ Sbjct: 510 YAAEDADITLRLWEVFKPQLHRKQVTSVYETMERPLVPVLAKMEMHGIKVDRDTLSRMSN 569 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSS 265 + L+ EL L G + ++ LF + GL T VL Sbjct: 570 AFAQKMAGLEDELYELAGGK-FNVGSPAQVGEILFDQMGLEGGKKGKNGKYATGADVLED 628 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 +V + R S+ + L +N++ T + + TGR S Sbjct: 629 LATEHDLPGRVLDWRQ-LSKLKSTYTDALQTHINAETGRVHTSYSITGANTGRLSSTDPN 687 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P + + +R IA EGK LV D + IE Sbjct: 688 LQNIPIRTDEGRK-------------------------IREAFIADEGKVLVALDYSQIE 722 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A +AF G D++ T + FNV ++T D R K + Sbjct: 723 LRILAHVANIDALKQAFRDGHDIHAMTASEMFNVPLDEMTPDVRRQAKAINF-------- 774 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ A + Sbjct: 775 ------GVIYGIS------------------------------GFGLARNLRIPRAEAQG 798 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + ++ + ++ ++ + + G Sbjct: 799 FIDRYFERFPGIRTYMDDTVAFAKE--------------------------HNRVETLFG 832 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621 R + ++ R +Q + D++ M+ A Sbjct: 833 RKIHTPEINAK----GPGAGFAKRAAINAP------IQGTAADVIRRAMIRMDDAIAHLP 882 Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + + +M + P +PL + + Sbjct: 883 AKMLLQVHDELVFEVDKDAAEDLIAAARDVMENAANPVVKFDVPLVVDAGIGATW 937 >gi|260902594|ref|ZP_05910989.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037] gi|308109599|gb|EFO47139.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037] Length = 931 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 103/703 (14%), Positives = 197/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F D+ HD + Sbjct: 355 AFDTETDSLDYMV----------ANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVL 404 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 + LK LE+ V N ++ +VL +++ ++ T++ + Sbjct: 405 EQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKY-DTMLASYVYNSVGGKHDMDS 462 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ Y D VT + Sbjct: 463 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHN 512 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL ++ L + I G +D + + +L+Q+ Sbjct: 513 RLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLEELEQKA 572 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + GL T +T + VL P + Sbjct: 573 YEI-AEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLHELALDYPLPKLILE 631 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 632 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 690 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 691 -------------------------IRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQAL 725 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V+ QV+ +QR K + G++ Sbjct: 726 LDAFRDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVN--------------FGLIYGMS 771 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 772 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 801 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + A + I GR L ++ + Sbjct: 802 QYMEDTRSAA--ADKGYVETIF------------------------GRRLHLPEIKSRNG 835 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631 + R +Q + DI+ + M+ +++ VHDE Sbjct: 836 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 886 Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V + S + LM S +PL AE + Sbjct: 887 LVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 927 >gi|121608805|ref|YP_996612.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2] gi|121553445|gb|ABM57594.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2] Length = 936 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 108/706 (15%), Positives = 202/706 (28%), Gaps = 167/706 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51 + +D ET S ++ ++ + H Sbjct: 360 DLVALDTETDSLDEMR----------AQIVGISLSVQPGAAAYIPLQHSGPDAPAQLPIG 409 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSAL 109 + LK LE+ + + ++R V +++ + T++ + + P L Sbjct: 410 QVLARLKPWLEDGRRHKLGQHIKYDRHVFANH-GIEVQGY-VHDTMLQSYVLEVHKPHNL 467 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 ++ E G++ I+ E P + Y D +T Sbjct: 468 GSLAERH--------TGRKGISY----EDLCGKGAHQLPFAQVPVDKAAAYSCEDADLTL 515 Query: 170 EIFKRLEPLSSKEQELWYL----------DQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L P L ++ I G +D + + +L Sbjct: 516 NVHQTLWPQLQAHDRLRFIYELEIASSEALYRIERNGVLIDAPTLAQQSHELGQRIEQLQ 575 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 + +L + ++L F + G+ + T +T + VL + P + Sbjct: 576 ADAYALAGQP-FNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAENYPLPAK 634 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R + + L + GR+ A TGR S QN+P + Sbjct: 635 LLEHR-GLIKLKGTYTDKLTQLALPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPIRTP 692 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 VR +A G + AD + IE R++A ++ Sbjct: 693 EGRR-------------------------VREAFVAPAGCVIASADYSQIELRIMAHLSD 727 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q L AF G D++ T A F VA QV+ +QR KV+ L Y G Sbjct: 728 DQALLHAFHAGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMG-----SFGLA 782 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L L A + + + + + + + + G R Sbjct: 783 KNLGLENKAAAAYIDRYFQRYPGVKQYMDQTRAAAKSNGYVETVFGR---------RLYL 833 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 ++ P+G G Sbjct: 834 PEINS-------------------------------------------PNGPRRS----G 846 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 RS +N +Q + D++ M+ K +++ V Sbjct: 847 AERSAINAP------------------MQGTAADLIKMAMVAVQKELDAQQPAIRMIMQV 888 Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E P + LM + +PL AE + Sbjct: 889 HDELVFELPGNAVDWLRTHVPRLMAEVAT--LKVPLLAEVGVGPNW 932 >gi|262163668|ref|ZP_06031409.1| DNA polymerase I [Vibrio mimicus VM223] gi|262027884|gb|EEY46548.1| DNA polymerase I [Vibrio mimicus VM223] Length = 890 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 105/703 (14%), Positives = 205/703 (29%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54 D ET S + ++ +F + HD + + Sbjct: 314 AFDTETDSLDYMV----------ANLVGMSFAVAEGEAAYIPVAHDYLDAPQQLDRAWVI 363 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 364 AQLKPLLEDESKAKVGQNLKYDASVIARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 421 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ + +Y D VT + + Sbjct: 422 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQ 471 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ PL ++ L + I G +D L +Q + + +L+Q+ Sbjct: 472 RISPLIEQDSKLAQVYSEIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEQKA 531 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L T +T + VL P + Sbjct: 532 YELAGQS-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 590 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N + T + TGR S QN+P + Sbjct: 591 YR-GLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 649 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 650 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 684 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V QV+ +QR K + G++ Sbjct: 685 LDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GLIYGMS 730 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 731 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 760 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + + GR L ++ + + Sbjct: 761 QYMEDTRSRAAE--------------------------LGYVETIFGRRLHLPEITSRNA 794 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631 + R +Q + DI+ + M+ + +++ VHDE Sbjct: 795 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDE 845 Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V + S + LM S A +PL AE + Sbjct: 846 LVFEVEESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 886 >gi|294678002|ref|YP_003578617.1| DNA polymerase I [Rhodobacter capsulatus SB 1003] gi|294476822|gb|ADE86210.1| DNA polymerase I [Rhodobacter capsulatus SB 1003] Length = 950 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 96/720 (13%), Positives = 200/720 (27%), Gaps = 181/720 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L +D ET S ++ ++ + H Sbjct: 359 VLAVDTETTSLDEM----------QAELVGVSLSTGPGRACYIPLGHTTGGDDLFGTTAL 408 Query: 51 -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 +LK LE+ + + N ++ + I + + T++++ + Sbjct: 409 APGQMPMDEALAILKPVLEDESLLKIGQNMKYDWKIFARH---GIRVAPFDDTMLMSYAM 465 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + A+ E + KELI + Y Sbjct: 466 FSGLHGHGMDALSEEY--LRHRPIPIKELI----------GTGKAQITFDKVPLDKATAY 513 Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T ++ +P + E+ L + + G VD + ++ + Sbjct: 514 AAEDAEITYRLWAAFKPQLHRAQVTTVYETLERPLVPVLAEMEMAGVKVDPTVLARMSNV 573 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266 L++E+++L + ++L LF + G+ + +T T VL Sbjct: 574 FAQRMAGLEEEIQALAGQS-FNVGSPKQLGEILFDKLGVPGGEKGKTGAYATGADVLEDI 632 Query: 267 --KKLTPQAIQV---FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWS 320 + QA + + + ++ + L +N D GR+ + GA+ TGR + Sbjct: 633 TTMEDHKQAADLAAKVLDWRQIAKLKSTYTDALQTHVNPDTGRVHTSYSIAGAN-TGRLA 691 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380 QN+P S +R +A+ G ++V D Sbjct: 692 STDPNLQNIPVRSDEGRR-------------------------IREAFVATPGHRIVSLD 726 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA +A AF G D++ T + F V + R K + Sbjct: 727 YSQIELRILAHVANLPEMKAAFARGIDIHAMTASEMFGVPVEGMDPMVRRRAKAINF--- 783 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 G++ A Sbjct: 784 -----------GVIYGIS------------------------------GFGLARNLRIPR 802 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + + ++ + +E + N + Sbjct: 803 SEAQGFIDRYFERFPGIRAYMDETVAFAK--------------------------ANGFV 836 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---- 616 GR + ++ R +Q + DI+ M+ Sbjct: 837 QTLFGRKIHTPEINAK----GPGAGFAKRAAINAP------IQGAAADIIRRAMIRMPAA 886 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673 ++L VHDE++ E ++ + +M A +PL + + + Sbjct: 887 IAHLPAKMLLQVHDELIFEVAESAVDPLIATARAVMEGAADPAVRLSVPLVVDAGQGASW 946 >gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503] gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503] Length = 921 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 96/698 (13%), Positives = 193/698 (27%), Gaps = 160/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEA 60 D ET L ++ +F ++ + + + A Sbjct: 351 AFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEAAKVVERFSPA 400 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 L+N + N F+ VL+ N+ + T++ + + E Sbjct: 401 LQNPKSLKIGQNIKFDILVLRKY-NVKVA-GPLFDTMIAHYLLNPELRHGMDYLAETY-- 456 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 + +ELI EY D +T ++ P Sbjct: 457 LKYQTVHIEELIG---------PKGKNQLSMRNVPVEQIAEYAAEDADITLKLKNYFAPE 507 Query: 179 SS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E L Y+ + G +D + + KL+QE+ L Sbjct: 508 LKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEVYELAGT 567 Query: 229 LVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + +++ LF L + T+ +T + VL + P ++ R Sbjct: 568 -EFNINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRSKHPIIGKLLEYR-GL 625 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + ++ L E +N T + TGR S QN+P E Sbjct: 626 KKLLSTYIDALPELINPQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGRE----- 680 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R I AD + IE R++A ++G+ ++AF Sbjct: 681 --------------------IRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPHMIEAF 720 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 ++G D++ T A+ + + +VT D R K G+++ Sbjct: 721 QSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANFG--------------IIYGISVFGL 766 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + + + + + R+ E Sbjct: 767 AER------------------------------LGIPRSESKELIDGYFSTYPRIKEYME 796 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 E + ++ + R D+ ++ + + Sbjct: 797 ESIKVAKE--------------------------KGYVETIFKRKRFLSDINSHNAVVRG 830 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 R +Q + DI+ M+ + ++L VHDE+ Sbjct: 831 Y---AERNAINAP------IQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNV 881 Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PL A+ E + + Sbjct: 882 YKEEAEEVKKIVLEEMENVMK--LQVPLIADCGEGENW 917 >gi|315178730|gb|ADT85644.1| DNA polymerase I [Vibrio furnissii NCTC 11218] Length = 932 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 101/703 (14%), Positives = 200/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + HD Sbjct: 356 AFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYVPVAHDYLDAPQQLDRDWAL 405 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ ++L ++++ T++ + Sbjct: 406 AQLKPILEDAQQAKVGQNLKYDASILARY-DINMQGIA-HDTMLASYVYNSVGGKHDMDS 463 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ Y D VT + Sbjct: 464 LALRFMQHS----------CISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDADVTLRLHH 513 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL PL ++ L + I G ++ L +Q + +L+++ Sbjct: 514 RLLPLLEQDDKLLSVYRDIEMPLVPVLSRIERTGVLINDMLLGAQSQEIAQRLDELEKKA 573 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+T F + L T +T + VL P + Sbjct: 574 FDIAGQ-EFNLSSPKQLQTIFFDQMKLPVIKKTPSGTPSTNEEVLQELALDYPLPAVILE 632 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 633 YR-GLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 691 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G++ Sbjct: 692 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKAL 726 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF+ G+D++ T A ++ QVT +QR K + G++ Sbjct: 727 LEAFQQGKDIHAATAAEILGISIDQVTSEQRRRAKAVNF--------------GLIYGMS 772 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 773 ------------------------------AFGLAKQLGIPRGEAQAYMDTYFERYPGVM 802 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + + GR L ++ + Sbjct: 803 QYMEDTRSTAAE--------------------------QGYVETLFGRRLHLPEITSRNG 836 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY---DIVLTVHDE 631 + R +Q + DI+ + M+ G +++ VHDE Sbjct: 837 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDAWIEAEGAGRVKLLMQVHDE 887 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E ++ + LM S A +PL AE + Sbjct: 888 LVFEVEESALSEIESKVQKLMESAA--ALKVPLVAEAGHGDNW 928 >gi|330806700|ref|YP_004351162.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374808|gb|AEA66158.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 922 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 106/705 (15%), Positives = 198/705 (28%), Gaps = 166/705 (23%) Query: 8 FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVL 57 ET A+ ++ +F + H + + L Sbjct: 341 TETNGGD----------AQHSQLVGLSFAVAPYEAAYIPLTHSYMGVPEQLDRDTVLKAL 390 Query: 58 KEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALK 110 K LEN + V ++ FE +L C + + T++ + + Sbjct: 391 KPLLENPNKLKVGQHAKFETNILANCAIGGDQNNGILVQGIA-FDTMLESYVLDSTAT-- 447 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + + K L + + + + L G Y D VT Sbjct: 448 ------RHDMDSLAL-KYLGQSKTDFQDIAGKGVKQLTFDQISLELAGPYAAEDADVTFR 500 Query: 171 IFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L+ E L + I +G VD L + + + L+ Sbjct: 501 LHQALQEKLAATPSLGTVLNDIEMPLMPVLARIERQGALVDANLLGVQSVELGEKLVALE 560 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 +E ++ + ++L L+ + GL + T +T + VL+ + + Sbjct: 561 REAFAIAG-EEFNLGSPKQLGVILYEKLGLPVLSKTAKGQASTAEAVLAELAEQDYPLPK 619 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 V S+ + L E +NS T + TGR S QN+P + Sbjct: 620 VLMQYRSLSKLKSTYTDRLPEQINSRTGRVHTNYQQAVAATGRLSSIDPNLQNIPIRTSE 679 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A +G KL+ AD + IE R++A +A + Sbjct: 680 GRR-------------------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAKD 714 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF D++ T A F V VT DQR K + Sbjct: 715 EGLLYAFRHNLDVHRATAAEVFGVELEAVTLDQRRSAKAINF--------------GLIY 760 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + + ++ Sbjct: 761 GMSAFGLAKQI------------------------------GVDRKQSQAYIDRYFARYP 790 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + + GR L D+ Sbjct: 791 GVLAYMERTRAQAAE--------------------------QGFVETIFGRRLYLPDINA 824 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVH 629 L + R +Q + DI+ + M+ + ++L VH Sbjct: 825 KNPALR---KGAERTAINAP------MQGTAADIIKKAMVAVDRWLTTSGLDAKVILQVH 875 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + + M++ + +PL E + Sbjct: 876 DELVLEVREDLVDQVRDEIRQHMSAAAT--LDVPLLVEVGVGNNW 918 >gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476] gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476] Length = 968 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 103/713 (14%), Positives = 213/713 (29%), Gaps = 174/713 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK------ 58 D ET S + ++ F+ H +LK Sbjct: 382 AFDTETTSLDPM----------QAKLVGFSLALQPGKAAYIPLEHFEGKEDLLKGGRIAS 431 Query: 59 ------------EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-- 104 LE++ V + N ++ V+K DI I + T++L+ + Sbjct: 432 QIETRKALALLKPLLEDSAVLKIGQNIKYDWLVVKQY---DIVIRSFDDTMLLSYALDAG 488 Query: 105 -LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 L + + E K K+L + + + Y Sbjct: 489 ALTHNMDDLSER--WLEHKPIAYKDLTHN----------GKKITSFAQVDLKQATLYAAE 536 Query: 164 DVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 D +T +++ L+P ++ L + + +RG VD + L+ + Sbjct: 537 DADITLRLWQVLKPQLVARGMTKIYERLDRPLVEVLARMEERGILVDRQILLRLSGELAQ 596 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKL 269 L++E+ + ++L LF + GL T+ +T + L Sbjct: 597 AALILEEEIYKQ-ADEKFNLASPKQLGDILFDKMGLPGGAKTKGGQWSTSAQTLEELSAE 655 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 + + ++ + L + T L + TGR S QN+ Sbjct: 656 GHTLPRKIIEWRQLAKLKSTYADALPSYILPKTGRVHTNYSLAITSTGRLSSSEPNLQNI 715 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P + + +R+ IA +G L+ AD + IE R+L Sbjct: 716 PVRTAEGRK-------------------------IRTAFIAPKGHVLLSADYSQIELRIL 750 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A + +AF G D++ T ++ F VA + D R K + Sbjct: 751 AHIADIKALKEAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAIN------------- 797 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 G++ A + R + Sbjct: 798 -FGIIYGIS------------------------------AFGLANQLGISRQEAGRYIQL 826 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + ++ + + + + N + GR + Sbjct: 827 YFERFPGIKDYMEKTKSFARE--------------------------NGYVETIFGRRIH 860 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623 Y ++ + + R +Q + DI+ M+ A Sbjct: 861 YPEIKAKNVKIRSL---NERAAINAP------IQGSAADIIRRAMIQMEDALKEENLSAK 911 Query: 624 IVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + + +++ +M + P + +PL+ + ++ + Sbjct: 912 MLLQVHDELIFEVPEEESKKTMAVVKDVMENATMPVLSLSVPLEVKVMTAQNW 964 >gi|58583863|ref|YP_202879.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625661|ref|YP_453033.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58428457|gb|AAW77494.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369601|dbj|BAE70759.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 933 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 100/705 (14%), Positives = 186/705 (26%), Gaps = 169/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 D ET S L +I + + H Sbjct: 358 AFDTETDSLDPL----------QADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTHAL 407 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 L L + V V + ++ V++ +++ + TL+ + + + Sbjct: 408 AQLAPLLTDPAVRKVGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDMDS 465 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + G + + E + P + + Y D +T + Sbjct: 466 LAKRY--------LGYDTVKY----EDVCGKGAKQIPFAQISLDDATRYAAEDADITLRL 513 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + I G CVD A + + Q Sbjct: 514 HHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQ 573 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF E L +T + L + + Sbjct: 574 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEDALEAIADQHELPRVI 632 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R S+ + L E ++ GR+ + GA+ TGR S QN+P + Sbjct: 633 LEYR-GLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 690 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G+KL+ D + IE R++A ++G+ Sbjct: 691 GRR-------------------------IRRAFVAPPGRKLIACDYSQIELRIMAHLSGD 725 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AF +G D++ T A F V+ D+R K + Sbjct: 726 PGLVGAFASGTDVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------GLMY 771 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + + ++ Sbjct: 772 GMS------------------------------AFGLARQLGIGRGEAQDYIALYFSRYP 801 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + Q + GR L + Sbjct: 802 GVRDFMETTRQQARD--------------------------KGYVETVFGRRLYLDFI-- 833 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 + R +Q + DI+ M+ ++L VH Sbjct: 834 -NAGSQGQRAGAERAAINAP------MQGTAADIIKRAMVKVDGWIADHAQRAKMILQVH 886 Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E S + M S +PL + + Sbjct: 887 DELVFEADVDFVDTLLSEVTTRMASAAE--LRVPLVVDSGVGDDW 929 >gi|164685884|ref|ZP_01945351.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177'] gi|165918262|ref|ZP_02218348.1| DNA polymerase I [Coxiella burnetii RSA 334] gi|212217767|ref|YP_002304554.1| DNA polymerase I [Coxiella burnetii CbuK_Q154] gi|164601404|gb|EAX33842.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177'] gi|165918122|gb|EDR36726.1| DNA polymerase I [Coxiella burnetii RSA 334] gi|212012029|gb|ACJ19409.1| DNA polymerase I [Coxiella burnetii CbuK_Q154] Length = 902 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 108/704 (15%), Positives = 200/704 (28%), Gaps = 161/704 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 D ET + ++ +F H HD Sbjct: 324 KVFAFDTETTDFNAI----------QAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKE 373 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111 + + LK LE+ + TI+ N ++ VL L I + TL+ + S Sbjct: 374 EVLRELKPLLEDPNKTIICQNLKYDAEVLAK-EGLTIR-AKTYDTLLASYVLNSSSTRHD 431 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + K L K E + + Y D VT ++ Sbjct: 432 L---------NTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDADVTLQL 482 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +L PL E L + + RG VD A+ + + L+Q Sbjct: 483 HHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSIELGGRIALLEQ 542 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+T L+ E L + T +T + VL P + Sbjct: 543 QAYKLAG-REFNLSSPKQLQTILYEELKLPIFKKTPGGQPSTAENVLQDLALDYPLPKVI 601 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R ++ + L ++ R T + TGR S QN+P + Sbjct: 602 LEHR-SLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEG 660 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + +R IA G ++V AD + +E R++A ++ + Sbjct: 661 RK-------------------------IRRAFIAPPGFQMVAADYSQVELRIIAHISKDP 695 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +KAF+ D++ T A F V QVT +QR K + G Sbjct: 696 SLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF--------------GLLYG 741 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + + +++ + Sbjct: 742 MSSFGL------------------------------GRQLGIGRDLAQEYIDIYFKRYPK 771 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR + D+ + Sbjct: 772 VHEYMQKIRIVAFT--------------------------QGYVETLFGRRVYLPDIHAS 805 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630 + +Q + DI+ M+ + +++ VHD Sbjct: 806 NMQRRRAAER---------AAINAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHD 856 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E + D + M A +PL + + Sbjct: 857 ELVFEMAEKDLEKVIPQIKKAMEEAV--ALSVPLVVDVGVGGNW 898 >gi|160900757|ref|YP_001566339.1| DNA polymerase I [Delftia acidovorans SPH-1] gi|160366341|gb|ABX37954.1| DNA polymerase I [Delftia acidovorans SPH-1] Length = 947 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 104/705 (14%), Positives = 197/705 (27%), Gaps = 167/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 +D ET S ++ ++ + + H + Sbjct: 374 ALDTETTSLDEMR----------AEIVGISLSVEPGAAAYIPLRHAGPDAPEQLPADEVL 423 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112 Q LK LE+ + + ++R V +++ + T++ + + P L ++ Sbjct: 424 QRLKPWLEDAARPKLGQHVKYDRHVFANA-GIEVHGY-VHDTMLQSYVLEVHRPHGLASL 481 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E P + Y D T ++ Sbjct: 482 ALRH------------TNRTGISYEDLCGKGAHQIPFAQVPVDKAAAYACEDADQTLDVH 529 Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L P E I G +D A + + +L+QE Sbjct: 530 RVLWPQLQANDGLRGVYELEIATSEALFRIERNGVLIDAATLARQSNDLGQRIVQLEQEA 589 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L F + G+ + T +T + VL + P ++ Sbjct: 590 YDIAGQP-FNLASPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLE 648 Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R S+ + L + GR+ A TGR S QN+P + Sbjct: 649 HR-SLSKLKGTYTDKLAQLALPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPIRTPEGR 706 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 VR IA+ G + AD + IE R++A ++G++ Sbjct: 707 R-------------------------VREAFIAAPGHVIASADYSQIELRIMAHLSGDES 741 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L+AF G D++ T + FNV QV+ +QR G+ Sbjct: 742 LLRAFHEGRDVHRATASEVFNVELEQVSSEQRRYA--------------KVINFGLIYGM 787 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A A + Q++ V Sbjct: 788 SSFGL------------------------------AKNLGIETKAAAAYIDRYFQRYPGV 817 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +E + + + GR L D+ Sbjct: 818 KRYMDETVEFARD--------------------------HGYVETVFGRRLYLVDI---N 848 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631 + R+ +Q + D++ + M+ +++ VHDE Sbjct: 849 GGSGPRKKAAERQAINAP------MQGTAADLIKKAMVAVQAELDARQSEVRVIMQVHDE 902 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +V E P+ + + LM +PL AE + K Sbjct: 903 LVFELPEGESDWVRTEIPRLMAGVAD--LKVPLLAEVGLGPNWDK 945 >gi|261364888|ref|ZP_05977771.1| DNA polymerase I [Neisseria mucosa ATCC 25996] gi|288566937|gb|EFC88497.1| DNA polymerase I [Neisseria mucosa ATCC 25996] Length = 933 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 114/707 (16%), Positives = 210/707 (29%), Gaps = 166/707 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 354 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 403 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V + + ++ + L Sbjct: 404 DVLGRLKPHLENPVLKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 461 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 462 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIEQATEYAAQDADFAL 509 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 510 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 569 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + L + ++L+ LF + G+ + L + +T + VL P Sbjct: 570 EAYAAAGQL-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 628 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 629 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 686 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 VR A +G +V AD + IE R++A ++ Sbjct: 687 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 721 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F +AP V+ +QR K + Sbjct: 722 GDKTLIAAFQNGEDVHCRTAAEVFGIAPENVSSEQRRYAKTIN--------------FGL 767 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ A + ++ + + + Sbjct: 768 IYGMGQYGLAKSLGIDNLS------------------------------AKTFIDRYFAR 797 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V+E + + GR L D+ Sbjct: 798 YPGVAEYMQRTKEQA--------------------------AAQGFVETLFGRRLYLPDI 831 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627 N + R +Q + D++ M++ ++ +++ Sbjct: 832 RNKNA---NARAGAERAAINAP------MQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQ 882 Query: 628 VHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E P+++ L LM +PL AE + + Sbjct: 883 VHDELVLEVPESELDLVKTNLPELMADVGKGLLNVPLVAEVGVGENW 929 >gi|310814705|ref|YP_003962669.1| DNA polymerase I [Ketogulonicigenium vulgare Y25] gi|308753440|gb|ADO41369.1| DNA polymerase I [Ketogulonicigenium vulgare Y25] Length = 607 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 95/716 (13%), Positives = 197/716 (27%), Gaps = 178/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + D ET S ++ ++ + H Sbjct: 21 YVAFDTETTSLDEM----------QAELVGVSLALVPGRAAYIPLGHRMAAGDDLFADNR 70 Query: 51 --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 V+ L+ LE+ V + N ++ ++ + + T++L+ + Sbjct: 71 LTEGQLPLEVVLNALRPVLEDPAVLKIGQNIKYDVKIMARY---GVHLAPVDDTMLLSYA 127 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + + E + + KELI Sbjct: 128 LHAGLHNHGMDELSERY--LNHRPIPIKELI----------GSGKSAVTFDHVPVEKAVA 175 Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T +++ +P + E+ L + + G VD ++ Sbjct: 176 YAAEDADITLRLWQHFKPQLPQSRVTTVYETLERPLIPVLTRMEMAGVQVDRDTLSRMSN 235 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSS 265 + +L++E+ + + ++L LF E G + T VL Sbjct: 236 AFAQKMVQLEEEIHAAAG-RSFNVGSPKQLGEILFDEMGFQGGVKGKNGAWGTGADVLED 294 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVF 324 + + R ++ + L + +N D GR+ + GA+ TGR + Sbjct: 295 LATEHALPGLILDWRQ-VAKLKSTYTDALQDHINPDSGRVHTSYSIAGAN-TGRLASTDP 352 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P + +R +A GK LV D + I Sbjct: 353 NLQNIPVRTEEGRR-------------------------IRGAFVAPAGKVLVSLDYSQI 387 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA +A +AF+ G D++ T + FNV Q+T + R K + Sbjct: 388 ELRILAQIAQIDALKEAFQQGLDIHAATASEMFNVPLDQMTPEIRRQAKAIN-------- 439 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 G++ A + Sbjct: 440 ------FGVIYGIS------------------------------AFGLARNLRIPRDRAQ 463 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + ++ + ++ ++ N + Sbjct: 464 GFIDRYFERFPGIRAYMDQTIAFAKE--------------------------NGHVRTLF 497 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KA 620 GR + ++ R +Q + DI+ M+ Sbjct: 498 GRRINTPEINAK----GPHAGFARRAAINAP------IQGTAADIIRRAMIQMDPAIAHL 547 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWA--KGLPLKAEGYESKRY 673 ++L VHDE++ E + + + +M A + L + + + Sbjct: 548 PARMLLQVHDELLFEVEENAADELTAIAKRIMEGAADPAVHLDIKLVVDAGRGQNW 603 >gi|150398570|ref|YP_001329037.1| DNA polymerase I [Sinorhizobium medicae WSM419] gi|150030085|gb|ABR62202.1| DNA polymerase I [Sinorhizobium medicae WSM419] Length = 1004 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 103/702 (14%), Positives = 207/702 (29%), Gaps = 173/702 (24%) Query: 25 AEDVCVILFAFGFDDH---------PVELWDCVH-------------DPVMPQV-----L 57 A ++ F+ D+ H D +P L Sbjct: 419 AMRADLVGFSLAIADYANDPSGSRIRAAYVPLAHKNGTGDLLGGGHIDNQIPAREALSRL 478 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 KE LE+ + VA N + V+K + + + T++++ ++++ E Sbjct: 479 KELLEDPSILKVAQNLKYGYLVMKRH---GVTMQGFDDTMLISYVLDAGNGAHGMESLAE 535 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 G IA + Y D + ++ Sbjct: 536 RW--------LGHTPIASKG----ITGSGRSSLTIDFVDIDKAAAYSAEDADIALRLWHV 583 Query: 175 LEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L+P + + L + + +RG VD + L+ + L+ E+ Sbjct: 584 LKPRLTARGLTRVYERLERPLISVLAGMEERGIPVDRQILSRLSGELAQGAAALEDEIYR 643 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280 L + ++L LF + GL T+ +T +VL + + Sbjct: 644 LAG-ETFTIGSPKQLGDILFGKLGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDW 702 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ + L ++ + + T L A+ TGR S QN+P + + Sbjct: 703 RQLTKLKSTYTDALPGFVHPETKRVHTCFALAATTTGRLSSSDPNLQNIPIRTGEGRK-- 760 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R+ +A+ G KLV AD + IE RVLA +A + Sbjct: 761 -----------------------IRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQ 797 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ T + F V + + R K + + G++ Sbjct: 798 AFADGVDIHAMTASEMFGVPVDGMPGEIRRRAKAINFGII--------------YGISAF 843 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A+ + + K + ++ + + Sbjct: 844 GLANQLSIE------------------------------RSEAGDYIKRYFERFPGIRDY 873 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + N + GR Y D+ ++ + Sbjct: 874 MENTKTFARE--------------------------NGYVETIFGRRAHYPDIRSSNPSM 907 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVC 634 R +Q + DI+ M+ K ++L VHDE++ Sbjct: 908 R---AFNERASINAP------IQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIF 958 Query: 635 ETPDTDEF-NASMLYHLMTSNPSWAKG--LPLKAEGYESKRY 673 E + + ++ +M + A +PLK + + + Sbjct: 959 EVEEGEIERTIPVIVSVMENAAMPALDMRVPLKVDARAAHNW 1000 >gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366] gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366] Length = 939 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 101/700 (14%), Positives = 202/700 (28%), Gaps = 162/700 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKE 59 + D ET A ++ +F + + + + Sbjct: 368 ISFDTETTGTD----------ANLAELVGLSFSIKPGEGYYIPVPAEMEAAQQIVEEFRP 417 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117 LEN ++ + N ++ +LK + + R T++ + + E Sbjct: 418 VLENENIVKIGQNIKYDMLILKWY-GISVK-GRLFDTMLAHYLIDPDTRHNMDVLSE--N 473 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + LI +Y D +T ++ EP Sbjct: 474 YLNYSPISITTLIG---------PKGKSQGTMRDVPVEKVVDYAAEDADITLQLANVFEP 524 Query: 178 LS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 L E L Y+ I G +D+ ++ ++++ K +Q + Sbjct: 525 LLKQLNAEKLATEVENPLIYVLADIEKEGVRIDMDTLINYSKELELDIRKFEQSVYDKCG 584 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L LF + L + T+T T + VL + + + + R Sbjct: 585 IK-FNLASPKQLGEVLFDKLQLDPKAKKTKTGQYQTGEDVLLALAHKSDIVQDILDFRQ- 642 Query: 283 ASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ L +N GR+ + A+ TGR S QN+P + E Sbjct: 643 LQKLKSTYVDALPLLVNPKTGRVHTSFNQAVAA-TGRLSSNNPNLQNIPIRTERGRE--- 698 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 VR I E L+ AD + IE R++A ++ E+ L Sbjct: 699 ----------------------VRKAFIPRDENHILLSADYSQIELRIIADISKEENMLD 736 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ G D++ T AR + +A +VT QR K G + Sbjct: 737 AFKNGIDIHTATAARVYGIAIEEVTPTQRRNAKA--------------VNFGIIYGQS-- 780 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + ++ + Sbjct: 781 ----------------------------AFGLSQNLGIPRKEAAEIIEQYFTQYPGIKRY 812 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 ++ + N + GR RD+ + Sbjct: 813 MSDTMNFARE--------------------------NGFVETILGRRRYLRDINSANQ-- 844 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVC 634 T R +Q + D++ M+N K + + VHDE+V Sbjct: 845 -TVRGFAERNAINAP------IQGSAADMIKVAMINIHKDIQDQGLQSKMTMQVHDELVF 897 Query: 635 ETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + ++ + M + +P++ E E + + Sbjct: 898 DVLKSEVEAMKKIIAHRMKTAIK--TTVPIEVEIGEGENW 935 >gi|329114079|ref|ZP_08242843.1| DNA polymerase I [Acetobacter pomorum DM001] gi|326696618|gb|EGE48295.1| DNA polymerase I [Acetobacter pomorum DM001] Length = 965 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 100/707 (14%), Positives = 198/707 (28%), Gaps = 164/707 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 +D ET L ++ F+ H+ + E L Sbjct: 383 ICAVDTETDGLDPLA----------ANIVGFSIATAPGKACYVPLKHEGTLEAPTGEQLA 432 Query: 63 -------------NTDVTIVAHNSYFERTVLKACFNLDIP-IHRWICTLVLARSNGLPSA 108 + V + HN+ F+ +L + + I T++++ + Sbjct: 433 VDAALKLLAPLLQDDAVLKIFHNAKFDLLILD-HAGIPLSSITAVDDTMLISY--SQSAG 489 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 L ++ L ++ P + +Y D VT Sbjct: 490 L------HGQGMDELSNLH-LNHTPITYDSVTGTGRNRVPFAQVPVETATKYAAEDADVT 542 Query: 169 REIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ L P E+ L + + G VD L++ + + Sbjct: 543 LRLWYVLHPTLRTNKALALYEQIERPLSVILADMEKAGIAVDRTELDRLSKDFEARMQGM 602 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274 + ++ + ++L LF E GL + +T VL Sbjct: 603 ENDIYEAAGRQ-FNIGSPKQLGEILFDEMGLKGGKRGKAGAWSTDSSVLQDLADQGHDLP 661 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + ++ + L+ D R+ + Q + TGR S QN+P + Sbjct: 662 ARILAWRQLAKLKSTYTDALLRQAGRDDRVHTSFQMAI-TSTGRLSSTDPNLQNIPVRTE 720 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA GKKL+ AD + IE R+LA +A Sbjct: 721 EGTR-------------------------IRQAFIAPSGKKLISADYSQIELRLLADVAN 755 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +AF+ G+D++ T + FN+ + R K + Sbjct: 756 IPALREAFQLGQDIHARTASEVFNIPLEGMDALTRRRAKAIN--------------FGII 801 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + A+ ++ Sbjct: 802 YGIS------------------------------AFGLGKQLGIPAGEARTYIDAYFARY 831 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + + + ++ P GR + Sbjct: 832 PGIRDYMERMREEART--------------------------HGYVLTPFGRRCYVPGIH 865 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGY---DIVLT 627 + R+ Q + DI+ M+ KAG+ ++L Sbjct: 866 EKSAARRQY---AERQAINAPL------QGGAADIIKRAMVHLPLALQKAGFGATRMLLQ 916 Query: 628 VHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 VHDE++ ET ++D + + +M + A +PL E + + Sbjct: 917 VHDELLFETDESDAEAVAEIIKNVMEAAADLA--VPLVVETGIGQNW 961 >gi|126734956|ref|ZP_01750702.1| DNA polymerase I [Roseobacter sp. CCS2] gi|126715511|gb|EBA12376.1| DNA polymerase I [Roseobacter sp. CCS2] Length = 938 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 97/721 (13%), Positives = 204/721 (28%), Gaps = 183/721 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET ++ ++ + + H Sbjct: 347 YVAVDTETTGLNEMI----------AELVGISLCVEAGQACYIPLTHKSAASDDLFGSDE 396 Query: 51 --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +LK L++ V + N ++ + LDI + T++++ + Sbjct: 397 MAEGQMDFDECLAMLKPVLQDPAVIKIGQNMKYDAKIFAR---LDIDVAPIDDTMLMSYA 453 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + + E G I + R + Sbjct: 454 MNAGKHNHGMDTLSERY--------LGHTPIPI----KPLLGSGKSAITFDRVPVDDAVK 501 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T ++++ +P + L + + G VD ++ Sbjct: 502 YAAEDADITLRLWQQFKPQLHMNRVTTVYETMERPLVPVLAQMERHGIKVDRDTLSRMSN 561 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---------TTCQ 260 + L+ E++ + + ++L LF E GL + D + +T Sbjct: 562 AFAQKMAGLEDEIQEMAGRP-FNVGSPKQLGEILFDEMGLEMPDGKKPSTGKTGAYSTGA 620 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRW 319 VL L ++ + R S+ + L E +N GR+ + GA+ TGR Sbjct: 621 DVLEDLATLHDMPRRILDWRQ-LSKLKSTYTDALQEHINAETGRVHTSYSIAGAN-TGRL 678 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 + QN+P S +R +A +GK +V Sbjct: 679 ASTDPNLQNIPVRSEEGRR-------------------------IREAFVAEDGKVIVSL 713 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R+LA +AG +AF G D++ T + F+V ++T D R K + Sbjct: 714 DYSQIELRILAHIAGIDALKQAFLDGIDIHAMTASEMFDVPLDEMTPDVRRQAKAINF-- 771 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 G++ A Sbjct: 772 ------------GVIYGIS------------------------------GFGLARNLRIP 789 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + ++ + + ++ ++ N Sbjct: 790 RGEAQGFIDRYFERFPGIRKYMDDTVAFAKE--------------------------NSY 823 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + GR + ++ R +Q + D++ M+ Sbjct: 824 VQTLFGRKINTPEINAK----GPHAGFAKRAAINAP------IQGTAADVIRRAMIRMPD 873 Query: 620 A----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN--PSWAKGLPLKAEGYESKR 672 A ++L VHDE++ E + + +M + P+ + L + + Sbjct: 874 AIAGLPAKMLLQVHDELIFEVEEGAVDDLITAARDVMENASDPAVKLDVKLAVDAGQGAN 933 Query: 673 Y 673 + Sbjct: 934 W 934 >gi|188574814|ref|YP_001911743.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519266|gb|ACD57211.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A] Length = 933 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 100/705 (14%), Positives = 186/705 (26%), Gaps = 169/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 D ET S L +I + + H Sbjct: 358 AFDTETDSLDPL----------QADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTHAL 407 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 L L + V V + ++ V++ +++ + TL+ + + + Sbjct: 408 AQLAPLLTDPAVRKVGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDMDS 465 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + G + + E + P + + Y D +T + Sbjct: 466 LAKRY--------LGYDTVKY----EDVCGKGAKQIPFAQISLDDATRYAAEDADITLRL 513 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + I G CVD A + + Q Sbjct: 514 HHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQ 573 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF E L +T + L + + Sbjct: 574 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEDALEAIADQHELPRVI 632 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R S+ + L E ++ GR+ + GA+ TGR S QN+P + Sbjct: 633 LEYR-GLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 690 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G+KL+ D + IE R++A ++G+ Sbjct: 691 GRR-------------------------IRRAFVAPPGRKLIACDYSQIELRIMAHLSGD 725 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AF +G D++ T A F V+ D+R K + Sbjct: 726 PGLVGAFASGTDVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------GLMY 771 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + + ++ Sbjct: 772 GMS------------------------------AFGLARQLGIGRGEAQDYIALYFSRYP 801 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + Q + GR L + Sbjct: 802 GVRDFMETTRQQARD--------------------------KGYVETVFGRRLYLDFI-- 833 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 + R +Q + DI+ M+ ++L VH Sbjct: 834 -NAGSQGQRAGAERAAINAP------MQGTAADIIKRAMVKVDGWIADHAQRAKMILQVH 886 Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E S + M S +PL + + Sbjct: 887 DELVFEADVDFVDTLLSEVTTRMASAAE--LRVPLVVDSGVGDDW 929 >gi|166710273|ref|ZP_02241480.1| DNA polymerase I [Xanthomonas oryzae pv. oryzicola BLS256] Length = 933 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 99/705 (14%), Positives = 186/705 (26%), Gaps = 169/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 D ET S L +I + + H Sbjct: 358 AFDTETDSLDPL----------QADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTHAL 407 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 L L + V V + ++ V++ +++ + TL+ + + + Sbjct: 408 AQLAPLLTDPAVRKVGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDMDS 465 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + G + + E + P + + Y D +T + Sbjct: 466 LAKRY--------LGYDTVKY----EDVCGKGAKQIPFAQISLDDATRYAAEDADITLRL 513 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + I G CVD A + + Q Sbjct: 514 HHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQ 573 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF E L +T + L + + Sbjct: 574 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 632 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L E ++ GR+ + GA+ TGR S QN+P + Sbjct: 633 LEYR-GLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 690 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G+KL+ D + IE R++A ++G+ Sbjct: 691 GRR-------------------------IRRAFVAPPGRKLIACDYSQIELRIMAHLSGD 725 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AF +G D++ T A F V+ D+R K + Sbjct: 726 PGLVGAFASGTDVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------GLMY 771 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + + ++ Sbjct: 772 GMS------------------------------AFGLARQLGIGRGEAQDYIALYFSRYP 801 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + Q + GR L + Sbjct: 802 GVRDFMETTRQQARD--------------------------KGYVETVFGRRLYLDFI-- 833 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 + R +Q + DI+ M+ ++L VH Sbjct: 834 -NAGSQGQRAGAERAAINAP------MQGTAADIIKRAMVKVDGWIADHAQRAKMILQVH 886 Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E S + M S +PL + + Sbjct: 887 DELVFEADVDFVDTLLSEVTTRMASAAE--LRVPLVVDSGVGDDW 929 >gi|209517786|ref|ZP_03266621.1| DNA polymerase I [Burkholderia sp. H160] gi|209501732|gb|EEA01753.1| DNA polymerase I [Burkholderia sp. H160] Length = 913 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 112/701 (15%), Positives = 204/701 (29%), Gaps = 162/701 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ + + H + Sbjct: 339 SFDTETTSLDPMI----------AQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVL 388 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ D V + ++ VL +++ TL+ + Sbjct: 389 AKLKPWLESADHKKVGQHLKYDEQVLANY-GIEMRGVE-HDTLLESYVLESHRTHDMDSL 446 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ +K K E + A EY D +T + + Sbjct: 447 ALRHLGEKTI----------KYEDVAGKGAQQIGFDEVALDKAAEYAAEDADITLRLHQA 496 Query: 175 LEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P + E+ + + + G +D + + +L+ E Sbjct: 497 LYPQIAAEKTLDHVYREIEVPTSRVLRKMERTGVLIDAEKLRQQSSEIATRLIQLEGEAY 556 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + GL + T + T + VL + P + + Sbjct: 557 ELAGG-EFNLGSPKQIGQIFFEKLGLPVIKKTPSGAPSTDEEVLQKLAEDYPLPKVLLEH 615 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N T + TGR + QN+P + Sbjct: 616 R-GLSKLKSTYTDKLPRMVNRQTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRR- 673 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA G KLV AD + IE R++A ++G++ + Sbjct: 674 ------------------------IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLM 709 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T + FNV P +V+ DQR + KV+ G++ Sbjct: 710 RAFSQGEDIHRATASEIFNVTPLEVSSDQRRVAKVINF--------------GLIYGMS- 754 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A A + + ++ V+ Sbjct: 755 -----------------------------AFGLASNLGITRDAAKMYIDRYFARYPGVAR 785 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 +E + + + GR L ++ Sbjct: 786 YMDETRLSAK--------------------------AKGYVETVFGRRLWLPEINGGNGP 819 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 R +Q + D++ M+ K G +++ VHDE++ Sbjct: 820 RRQA---AERAAINAP------MQGTAADLIKMSMIAVQNWIEDSKIGTRMIMQVHDELI 870 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E PD + L LM A +PL AE + Sbjct: 871 LEVPDAELSEVRKRLPELMCGVA--ALKVPLVAEVGTGLNW 909 >gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer DSM 15868] gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer DSM 15868] gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM] gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Riemerella anatipestifer RA-GD] Length = 935 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 99/699 (14%), Positives = 218/699 (31%), Gaps = 161/699 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----VHDPVMPQVLKE 59 + D ET S ++ + +I +F + + + + Sbjct: 365 VCFDTETTSLDEM----------EAELIGISFSYKKGLAYYVPIPENRAEAQAIVERFRP 414 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117 E + +AHN ++ VL +++ T++ + + E Sbjct: 415 FFEKESILKIAHNLKYDYKVLLNY-GIEV-TGNLFDTMIAHYLLNPDGRHGMDYLSEMY- 471 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + K + LI + K +Y D +T ++++ P Sbjct: 472 -LNYKPIALETLIGK---------KGKGQKTLREIDLPTQTQYAAEDADITFQLYEIFSP 521 Query: 178 LSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E L + + G +D + ++ + L+ ++ Sbjct: 522 QLKKEEVEEVFYKIEMPLVKVLAKMELTGVALDEEWLKDESISLEQDLKILEGQIFEQAG 581 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L LF + L + T+ +T + VL + R Sbjct: 582 -EEFNINSPKQLGDILFEKLKLDPKAKKTKTGQYSTSEDVLQKLSHKHEIIKLILEYRQ- 639 Query: 283 ASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ L ++ DGR+ + A+ TGR + QN+P + Sbjct: 640 LQKLKSTYVDALPNQISPIDGRVHTSFAQTVAA-TGRLASNNPNLQNIPIRTERG----- 693 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 VR +A +G K+V AD + IE R++A ++GE+ +KA Sbjct: 694 --------------------QQVRGAFVAPKGSKIVSADYSQIELRLIAEISGEETMIKA 733 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F+ G+D++ +T ++ F+V +V+K QR+ K + + Sbjct: 734 FKEGQDIHASTASKLFDVPLNEVSKTQRSQAKTVNFGII--------------------- 772 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 ++ A + T +++ ++ + + ++ Sbjct: 773 -----------------------YGQSAFALADQTGLSRTDAKQLIDSYYETYPKLKAFM 809 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 E Q + + GR +D+ +N + Sbjct: 810 TEQVQVARK--------------------------KGYVETIMGRKRHLKDINSNNFVVR 843 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635 + +Q + DI+ M+ ++L VHDE+V E Sbjct: 844 GHAERN---------AVNAPIQGSAADIIKLAMIKIDSEIKAQGLKTKMLLQVHDELVFE 894 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + A +++ M + ++ +PL E + Sbjct: 895 VPNEEIEVATTLIKQEMETA--YSTKVPLLTEVGVGDNW 931 >gi|254497331|ref|ZP_05110136.1| DNA polymerase I [Legionella drancourtii LLAP12] gi|254353443|gb|EET12173.1| DNA polymerase I [Legionella drancourtii LLAP12] Length = 859 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 101/699 (14%), Positives = 208/699 (29%), Gaps = 160/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVMPQV 56 +D ET S + ++ + ++ +H + Sbjct: 287 CLDTETTSLDIMA----------AEIVGISLAIEEKKAAYIPFIHTDGSVQLLRDEVFAA 336 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 +K LEN + + N ++ +VLK + + + T++ + + Sbjct: 337 IKPILENPAIKKIGQNIKYDYSVLKNH-GIHLQGLAY-DTMLESYILNSNAG-------- 386 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + K L + E + + Y D +T ++ +L Sbjct: 387 RHDMDTLSL-KYLGHKTITFEDIAGKGAKQLRFDQIPVDKASVYAAEDADITLQLHHKLY 445 Query: 177 PL---------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 P+ + E L + + RG +D + + L++E L Sbjct: 446 PMMAESLHSVFNDIEMPLIPVLAEMELRGVLIDANTLEQHGKRLKERIKILEEEAIQLAG 505 Query: 228 GLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + ++L+ LF E + +T + VL A + +R Sbjct: 506 -KPFNLSSPKQLQEILFNEQKIPVIAKTPTGQPSTAESVLQELAFDYRLAAVILEHR-GL 563 Query: 284 SRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ ++ L + +N GR+ + A+ TGR S QN+P + Sbjct: 564 TKLVSTYIDALPKKINAETGRVHTSYNQAVAA-TGRLSSSEPNLQNIPIRNEEGR----- 617 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R+ IA + ++ AD + IE R++A ++ ++ L AF Sbjct: 618 --------------------LIRTAFIAPPEQVILAADYSQIELRIMAHLSQDENLLTAF 657 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ T A F++A +VT +QR K + G++ Sbjct: 658 ANGWDIHTATAAEIFHIAREEVTSEQRRRAKAVN--------------FGLIYGMSAFGL 703 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + + + Q++ +V E N Sbjct: 704 AKQI------------------------------GVERQDAQNYIDTYFQRYPKVLEYMN 733 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 Q + + GR L ++ Sbjct: 734 RTRQQAHE--------------------------QGYVETLCGRRLYLPEINTRNLMR-- 765 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-------YDIVLTVHDEIVCE 635 + R +Q + DI+ + M+N K +++ VHDE+V E Sbjct: 766 -QKAAERTAINAP------MQGTAADIIKKAMINIAKWQNAQATPPARMIMQVHDELVFE 818 Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + ++ + LM +PL + Sbjct: 819 VASQEIEASTVKIRQLMEQAMQ--LSVPLLVSIGTGPNW 855 >gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Oceanobacter sp. RED65] gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65] Length = 916 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 109/700 (15%), Positives = 206/700 (29%), Gaps = 157/700 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 ID ET S KY E ++ + + HD + Sbjct: 341 AIDTETTSL---------KYME-AEIVGISLAVAPNEACYIPLAHDYAGAPEQLDRDWVL 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLP---SALK 110 Q +K LE+ V N ++ VLK DI ++ T++ + + Sbjct: 391 QKMKPLLEDETPKKVGQNLKYDAHVLKNY---DIELNGIAHDTMLESYVLNSTASKHNMD 447 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + + G E I E+ + ++ GEY D +T Sbjct: 448 DLAKHY--------LGHECIDF----ESIAGKGAKQLTFNQIPVEQAGEYAAEDADITLR 495 Query: 171 IFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L P E L + + G V+ H + ++ +L+ Sbjct: 496 LHQVLWPQLEADESLLTLYKKVELPLVQVLTNMEYVGASVNADKLHQQSSEIEQRLQELE 555 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 ++ + V + ++L+ F + L + T +T + VL Sbjct: 556 RKAHDIAG-EVFNLGSTKQLQAIFFEKLELPVIKKTPKGQPSTAEEVLVELSHDYELPKV 614 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +R ++ + L +NS + T + TGR S QN+P + Sbjct: 615 ILEHR-GLAKLKNTYTDKLPLMINSKSQRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEE 673 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + +R A EG LV AD + IE R++A ++G+ Sbjct: 674 GRK-------------------------IRQAFEAPEGYTLVAADYSQIELRIMAHLSGD 708 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF+ G+D++ T A V A V +QR K + L Y A Sbjct: 709 KGLLDAFKNGKDIHRATAAEIMEVDEADVDNEQRRRAKAVNFGLIYGMSA-----FGLAR 763 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + + + + + + +E + + G + R Sbjct: 764 QLGIGRSEAQEYIDKYFDRYPGVKKYMESTRELAAKQGYVETLFGRRLYLPEINSRNGMR 823 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + G A KR + + Sbjct: 824 R-----QAAERTAINAPMQGTAADIIKRAMIKMHQW------------------------ 854 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 +Q + D+ +++ VHDE++ E Sbjct: 855 --------------------------IQESAHDV-------------HMIMQVHDELIFE 875 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 PD + + +M + +PL + ++ Sbjct: 876 VPDGQLDAVSAEIKSIMEAAAD--LDVPLLVDVGHGDNWQ 913 >gi|254463214|ref|ZP_05076630.1| DNA polymerase I superfamily [Rhodobacterales bacterium HTCC2083] gi|206679803|gb|EDZ44290.1| DNA polymerase I superfamily [Rhodobacteraceae bacterium HTCC2083] Length = 945 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 100/715 (13%), Positives = 191/715 (26%), Gaps = 176/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET D+ ++ + + H Sbjct: 359 YVAVDTETTGLNDMI----------ADLVGISMCSEAGKACYIPLTHKDASTDDLFGSDE 408 Query: 51 --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 + LK LE+ V + N ++ + I I T++++ + Sbjct: 409 LADGQLDLEIAIAALKPLLEDPSVMKIGQNMKYDAKIFARY---GIEIAPIDDTMLISYA 465 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + A+ E G I + R Sbjct: 466 QHAGLHNHGMDALSERY--------LGHTPIPI----KPLLGTGKSAITFDRVPIDHATP 513 Query: 160 YCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T +++ L+P E+ L + + G VD + ++ Sbjct: 514 YAAEDADITLRLWQHLKPTLHSARTTRVYETMERPLVPVLAQMERYGIKVDRDVLSRMSN 573 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSS 265 + L+ E+ + + ++ LF E GL +T +L Sbjct: 574 AFAQKMAGLEAEIHEMAGHS-FNVGSPAQVGEILFDEMGLEGGKKGKNGKYSTGADILED 632 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 ++ + R S+ + L + +N D T + + TGR + Sbjct: 633 LATEHEMPRRILDWRQ-LSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTGRLASTDPN 691 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S +R IA EGK LV D + IE Sbjct: 692 LQNIPIRSEEGRR-------------------------IREAFIAEEGKVLVALDYSQIE 726 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +AG +AF G D++ T + F+V ++T D R K + Sbjct: 727 LRILAHVAGIDSLKQAFRDGHDIHAMTASEMFDVPLDEMTADVRRQAKAIN--------- 777 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ A + + Sbjct: 778 -----FGVIYGIS------------------------------GFGLARNLRIPRSEAQG 802 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + + + E N+ + N + G Sbjct: 803 FIDRYFDRFPGIKEYMNDTTAFAK--------------------------ANDRVETLFG 836 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621 R + ++ R +Q + DI+ M+ Sbjct: 837 RVIHTPNINAK----GPQAGFAKRAAINAP------IQGTAADIIRRAMIRMPDAIKDQP 886 Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E +M + P +PL + + + Sbjct: 887 AKMLLQVHDELLFEVEKDGVDQLIKTAKDIMENAADPVVKLDVPLIVDAGQGANW 941 >gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559] gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559] Length = 956 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 107/699 (15%), Positives = 211/699 (30%), Gaps = 161/699 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----VHDPVMPQVLKE 59 + D ET LT ++ AF +D + + L+ Sbjct: 386 VCFDTETTGLNPLT----------AELVGIAFSWDAGKGFYLPFSDNKEEAQQLIEELRP 435 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117 EN D+ V N ++ VL ++++ T++ + + E Sbjct: 436 FFENEDIQKVGQNLKYDIKVLHKY-DIEVR-GPLFDTMLAHYLINPDMRHNMDVLAETY- 492 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + + LI + K EY D +T ++ + E Sbjct: 493 -LNYSPVSIETLIGK---------KGKNQKSMRDVPLEDQTEYAVEDADITLQLKEHFEK 542 Query: 178 LS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E L + + G +D A + L + ++ + L+ + Sbjct: 543 ELGDANTQKLFDDIEIPLLRVLAAMELEGINLDKAFLNNLAEDLNNDIATLEASIYKEAG 602 Query: 228 GLVSSSRCLEKLKTWLFLETGL-HLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L LF + L T +T + VLS V + R Sbjct: 603 -EEFNIGSPKQLGEILFDKLKLVEKPKKTRTGQYSTAEDVLSYLAADHTIIQNVLDYR-G 660 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ ++ L E + DGR+ A+ TGR S QN+P + Sbjct: 661 LAKLKSTYVDALPEQVEEDGRVHTDYMQTVAA-TGRLSSNNPNLQNIPIRTERGR----- 714 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 VR + E L+ AD + IE R++A ++ E ++A Sbjct: 715 --------------------QVRKAFVPKNEDYVLLAADYSQIELRIIAALSEEDTMIEA 754 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F+ GED++ +T A+ FNV +VT++QR+ K + + Y + + Sbjct: 755 FKNGEDIHASTAAKVFNVPINEVTREQRSNAKTVNFGIIY-----GVSAFGLSNQTD--- 806 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + + + + + ++ Sbjct: 807 ------------------------------------LTRSESKDLIDTYYKTYPKLRNYM 830 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + L + + + GR +D+ ++ + Sbjct: 831 SNLVDDARE--------------------------DGYVSTVLGRRRYLKDINSSNGVVR 864 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635 + +Q + DI+ M+N K ++L VHDE+V + Sbjct: 865 GAAERN---------AVNAPIQGSAADIIKVAMINIHKKLAEGNFKTKMLLQVHDELVFD 915 Query: 636 TPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 P + + L M S + +PL E + Sbjct: 916 VPKNELEDIKTLVKTEMESA--YTLSVPLDVEVGVGNDW 952 >gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523] Length = 897 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 105/702 (14%), Positives = 206/702 (29%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 323 AFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVL 372 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK + VAHN F+ VL ++I + T+++A Sbjct: 373 DKLKPLFADVKKAKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDMDSL 430 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + K G E IA + + + +Y D +T +F Sbjct: 431 S------KEHLGIEPIAY----TAIAGTGKHQQTLDQIDIEIVAKYAAEDADITFRLFNH 480 Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223 + L +++ L+ L I G +D + ++ +L+ + Sbjct: 481 FKALLEQDETLYKLYCEIEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCY 540 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 +L + +L+ LF + GL T +T + VL + A + Sbjct: 541 NLAGQ-EFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKY 599 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L + ++ + R+ + G + TGR S QN+P S + Sbjct: 600 RH-LSKLKNTYTDKLPKMLDVNSRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 656 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA G +V AD + IE R++A ++ ++ L Sbjct: 657 ------------------------IREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLL 692 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 KAF D++ T A + +V+ +QR K + G++ Sbjct: 693 KAFNQSLDIHSATAAEVLGIGIDEVSSEQRRKAKAINF--------------GLIYGMSA 738 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A ++ + + ++ V E Sbjct: 739 FGLAKQLEI------------------------------PRAEAQEYIDIYFNRYPSVKE 768 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + +Q N + GR L ++ + Sbjct: 769 YMTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVM 802 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632 R +Q + DI+ + M++ + +V+ VHDE+ Sbjct: 803 QRNA---AERAAINAP------MQGTAADIIKKAMIDVNTMILQEYNSEVKMVMQVHDEL 853 Query: 633 VCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E E + + +M + +PL+ + + Sbjct: 854 VFEVKKTKLEEIVAKIKSIMEAAVK--LSVPLEVNVDAGESW 893 >gi|225013103|ref|ZP_03703517.1| DNA polymerase I [Flavobacteria bacterium MS024-2A] gi|225002761|gb|EEG40743.1| DNA polymerase I [Flavobacteria bacterium MS024-2A] Length = 940 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 100/702 (14%), Positives = 209/702 (29%), Gaps = 162/702 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 ++ D ET S L + ++ AF ++ D + Sbjct: 367 KSVCFDTETTSLNAL----------EAELVGIAFSWNKGKGYYLALPEDKTEVLEILDPF 416 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE- 114 K E+ ++ + HN ++ VL+ ++ + T++ + + E Sbjct: 417 KAFFEHPEIEKIGHNLKYDLKVLRNY-DIHVK-APLFDTMIAHYLINPDMRHNMDILAET 474 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L S+Q + E LI + + EY D +T ++ + Sbjct: 475 YLNYSAQSITE---LIGK---------KGKNQGTMREVSLEQQTEYAVEDADITLQLKEY 522 Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E L + + G +DV+ +L+ + + KL+ + Sbjct: 523 FHEEMSTAKTLELYQKVELPLVSVLTNMECEGINLDVSFLKSLSVTLAEDIQKLEAAIFE 582 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L LF + L T+ +T + VLS K P + + Sbjct: 583 VAG-ENFNLASPKQLGLILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHPIISDIL-D 640 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L +N T+ + TGR S QN+P + Sbjct: 641 WRSLQKLQNTYVDALPNEINPKTGRVHTIYNQAVAATGRLSSNNPNLQNIPIRTERG--- 697 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398 VR I E L+ AD + IE R++A ++G++ Sbjct: 698 ----------------------QQVRKAFIPRDENHVLMAADYSQIELRIIAALSGDEGM 735 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF+ ED++ T ++ FNV +VT++QR K + + G++ Sbjct: 736 LSAFQNNEDIHSATASKVFNVPLEEVTREQRGNAKTVNFGII--------------YGVS 781 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + + + + + + ++ Sbjct: 782 AFGLSQQ------------------------------TNLNRSEAKELIETYYATYPKLR 811 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + N + GR +D+ + + Sbjct: 812 SYMQDQVDFARD--------------------------NGYVSTVLGRRRYLKDINSQNA 845 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632 + + +Q + DI+ M+ ++L VHDE+ Sbjct: 846 IVRGAAERN---------AVNAPIQGSAADIIKLAMIAIQNRLENKNWKSKMLLQVHDEL 896 Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 V + P + + M + +PL + + Sbjct: 897 VFDVPKEEINTLQEMVKKEMENAFE--INVPLIVDIGIGNNW 936 >gi|153838822|ref|ZP_01991489.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] gi|149747752|gb|EDM58648.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] Length = 677 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 102/703 (14%), Positives = 197/703 (28%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F D+ HD + Sbjct: 101 AFDTETDSLDYMV----------ANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVL 150 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 + LK LE+ V N ++ +VL +++ ++ T++ + Sbjct: 151 EQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKY-DTMLASYVYNSVGGKHDMDS 208 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ Y D VT + Sbjct: 209 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHN 258 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL ++ L + I G +D + + +L+Q+ Sbjct: 259 RLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLEELEQKA 318 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + GL T +T + VL P + Sbjct: 319 YEI-AEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPLPKLILE 377 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + Sbjct: 378 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 436 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 437 -------------------------IRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQAL 471 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V+ QV+ +QR K + G++ Sbjct: 472 LDAFRDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVN--------------FGLIYGMS 517 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 518 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 547 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + A + + GR L ++ + Sbjct: 548 QYMEDTRSAA--------------------------ADKGYVETIFGRRLHLPEIKSRNG 581 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631 + R +Q + DI+ + M+ +++ VHDE Sbjct: 582 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 632 Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V + S + LM S +PL AE + Sbjct: 633 LVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 673 >gi|294626790|ref|ZP_06705383.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598906|gb|EFF43050.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 934 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 99/705 (14%), Positives = 188/705 (26%), Gaps = 169/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 D ET S L +I + + H Sbjct: 359 AFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHNFPGAPVQLDRTQAL 408 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 L L + V + + ++ V++ +++ + TL+ + + + Sbjct: 409 AQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDMDS 466 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + G + + E + P + + Y D +T + Sbjct: 467 LAKRY--------LGYDTVKY----EDVCGKGAKQIPFAQISLEDATRYAAEDADITLRL 514 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E L + I G CVD A + + Q Sbjct: 515 HRVLGPRLTSEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQ 574 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF E L +T + L + + Sbjct: 575 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 633 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L E ++ GR+ + GA+ TGR S QN+P + Sbjct: 634 LEYR-GLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 691 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G+KL+ D + IE R++A ++G+ Sbjct: 692 GRR-------------------------IRRAFVAPPGRKLIACDYSQIELRIMAHLSGD 726 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+G D++ T A F V+ D+R K + Sbjct: 727 PGLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINF--------------GLMY 772 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + + ++ Sbjct: 773 GMS------------------------------AFGLARQLGIGRGEAQDYIALYFSRYP 802 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + Q + GR L + Sbjct: 803 GVRDFMETTRQQARD--------------------------KGYVETVFGRRLYLDFI-- 834 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 + R +Q + DI+ M+N ++L VH Sbjct: 835 -NAGSQGQRAGAERAAINAP------MQGTAADIIKRAMVNVDGWIADHAQRAKMILQVH 887 Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E S + M +PL + + Sbjct: 888 DELVFEADVDFVDTLLSEVTTRMAGAAE--LRVPLVVDSGVGDNW 930 >gi|209965764|ref|YP_002298679.1| DNA polymerase I, putative [Rhodospirillum centenum SW] gi|209959230|gb|ACI99866.1| DNA polymerase I, putative [Rhodospirillum centenum SW] Length = 987 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 98/721 (13%), Positives = 193/721 (26%), Gaps = 182/721 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51 T+ +D ET ++ ++ + + H Sbjct: 395 TVAVDTETDGLTPVS----------AGLVGISLSVEPGRACYIPVQHIDPATPKGATGGL 444 Query: 52 ---------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 LK LE+ V V N F+ + I + T Sbjct: 445 DLGGTPPPPPQIALADALARLKPLLEDPAVLKVGQNVKFDWQIFARH---GIAMAPIDDT 501 Query: 97 LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 ++++ G + + G I R Sbjct: 502 MLISYVLGTGLHGHGMDELALRH--------LGHTTIKYD----EVTGTGKSRITFDRVP 549 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVAL 203 +Y D +T + + L+ ++ L + + RG VD A+ Sbjct: 550 LDKARDYAAEDADITLRLHRVLKHDLVRQHMVTLYETVERPLVPVVARMESRGVLVDRAV 609 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TC 259 ++ +++ E++ L + ++L LF E L ++ T Sbjct: 610 LRQMSSDFAQRMLEMEAEIQKL-APRAFNVGSPKQLGEILFDEMKLPGGSKGKSGAWGTD 668 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + Q + + ++ + L E +++ T L A+ TGR Sbjct: 669 SGVLEGLAEQGVEIAQKVLDWRQLAKLKSTYTDALAEQIDARTGRVHTSFALAATATGRL 728 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+P + + +R +A G L+ Sbjct: 729 SSTDPNLQNIPIRTEEGRK-------------------------IRRAFVARPGHLLLSV 763 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R++A MAG +AF G D++ T ++ F V Q+T + R K + Sbjct: 764 DYSQIELRLVAEMAGVPALRRAFHDGIDIHAMTASQVFGVPLDQMTSEIRRKAKAIN--- 820 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 G++ + Sbjct: 821 -----------FGIIYGIS------------------------------GFGLGRQLGIT 839 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + ++ + + +G Sbjct: 840 PGEAGAFIRQYFERFPELQTYMETTKAFARE---HGYVTTLL------------------ 878 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT- 618 GR + + R+ +Q + DI+ M Sbjct: 879 -----GRRCWIQGIREKAPARRAY---AERQAINAP------IQGTAADIIKRAMARIEP 924 Query: 619 -----KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKR 672 K ++L VHDE++ E P+ + + +M G+PL AE + Sbjct: 925 ALAAAKLDAAMLLQVHDELLFEVPEAQVEETAAVVRGVMEGAA--GLGVPLVAEAGWAPN 982 Query: 673 Y 673 + Sbjct: 983 W 983 >gi|294664756|ref|ZP_06730083.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605467|gb|EFF48791.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 934 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 99/705 (14%), Positives = 188/705 (26%), Gaps = 169/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 D ET S L +I + + H Sbjct: 359 AFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHNFPGAPVQLDRTQAL 408 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 L L + V + + ++ V++ +++ + TL+ + + + Sbjct: 409 AQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GVELAGYA-EDTLLESFVLNSGSARHDMDS 466 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + G + + E + P + + Y D +T + Sbjct: 467 LAKRY--------LGYDTVKY----EDVCGKGAKQIPFAQISLEDATRYAAEDADITLRL 514 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E L + I G CVD A + + Q Sbjct: 515 HRVLGPRLTSEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQ 574 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF E L +T + L + + Sbjct: 575 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 633 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L E ++ GR+ + GA+ TGR S QN+P + Sbjct: 634 LEYR-GLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 691 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G+KL+ D + IE R++A ++G+ Sbjct: 692 GRR-------------------------IRRAFVAPPGRKLIACDYSQIELRIMAHLSGD 726 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+G D++ T A F V+ D+R K + Sbjct: 727 PGLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINF--------------GLMY 772 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + + ++ Sbjct: 773 GMS------------------------------AFGLARQLGIGRGEAQDYIALYFSRYP 802 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + Q + GR L + Sbjct: 803 GVRDFMETTRQQARD--------------------------KGYVETVFGRRLYLDFI-- 834 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 + R +Q + DI+ M+N ++L VH Sbjct: 835 -NAGSQGQRAGAERAAINAP------MQGTAADIIKRAMVNVDGWIADHAQRAKMILQVH 887 Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E S + M +PL + + Sbjct: 888 DELVFEADVDFVDTLLSEVTTRMAGAAE--LRVPLVVDSGVGDNW 930 >gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192] gi|38146989|gb|AAR11879.1| DNA polymerase I [Spirochaeta thermophila DSM 6578] gi|306531681|gb|ADN01215.1| DNA polymerase I [Spirochaeta thermophila DSM 6192] Length = 897 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 116/702 (16%), Positives = 201/702 (28%), Gaps = 167/702 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP-------QV 56 + +D ET LT ++ +F D+ V P +V Sbjct: 329 VAVDTETDGLDPLTC----------RLVGVSFAVDEGRACYVPLAAPDVRPLPADVVREV 378 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG 113 L L +T+V V N F+ VL+ P + T+V A L + Sbjct: 379 LSPLLVSTEVVKVGQNLKFDYHVLRRWGVR--PEGPFFDTMVAAWLLESDAGRYNLDRLA 436 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 E G I E G Y D + + + Sbjct: 437 EKY--------LGWRTIHYKDVVEKGA-------SFETVPVAEAGVYAAEDADIALRLSR 481 Query: 174 RLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+ E L + + + G +D + ++ + +++E+ Sbjct: 482 VLKERLEAEGLGRVFYEMEMPLLSILARMEEWGIGLDGEALSAFGRELEERISTIEKEIF 541 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280 L + ++L+ LF+E GL T+ +T VL P A +V R Sbjct: 542 ELVGH-EFNVGSTKQLQEVLFVERGLPPVKKTKTGFSTDTSVLEELAARDPVAAKVLEYR 600 Query: 281 MRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 ++ ++ L +N GRL +G + TGR S QN+P + Sbjct: 601 -SLTKLKNTYVDVLPGLVNPGTGRLHTWFSQVG-TATGRLSSKDPNLQNIPIKTEEGRR- 657 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R + G + AD + IE +LA ++ + Sbjct: 658 ------------------------IREAFVPQRGWWFLSADYSQIELVILAHLSEDPALC 693 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T + F V P VT +QR I K + G++ Sbjct: 694 RAFREGEDVHRATGSLLFGVPPEAVTPEQRRIAKTINF--------------GVIYGMS- 738 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + E ER A+ ++ V Sbjct: 739 -----------------------------AFRLSRELGIPRKEAERFIDAYFTTYAGVRA 769 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + E G GR + + Sbjct: 770 F---IERTIAEAEEKGYVTTL-----------------------FGRKRPLPYITSRN-- 801 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633 T R +Q DI+ M++ ++L VHDE++ Sbjct: 802 -KTQKTGAERIA------VNTPIQGSGADIIKLAMIDLDAQMRRMGLASRMILQVHDELI 854 Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674 E P + L M +PL+ E + + Sbjct: 855 FEVPPEELEVMKRLVRERMEGVVR--LSVPLRVEMGVGRNWG 894 >gi|294668660|ref|ZP_06733756.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309422|gb|EFE50665.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 958 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 111/707 (15%), Positives = 207/707 (29%), Gaps = 166/707 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 379 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 428 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V + + ++ + L Sbjct: 429 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 486 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 487 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 534 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 535 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 594 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 + + + ++L+ LF + G+ + L + +T + VL P Sbjct: 595 QAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 653 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 654 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 711 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 VR A +G +V AD + IE R++A ++ Sbjct: 712 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 746 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F +AP V+ +QR K + Sbjct: 747 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTIN--------------FGL 792 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ A + ++ + + + Sbjct: 793 IYGMGQYGLAKSLGIDNLS------------------------------AKTFIDRYFAR 822 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V+E + + GR L D+ Sbjct: 823 YPGVAEYMQRTKEQA--------------------------AAQGYVETLFGRRLYLPDI 856 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627 N + R +Q + D++ M++ ++ +++ Sbjct: 857 RNKNA---NARAGAERAAINAP------MQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQ 907 Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E P+ + L +M +PL AE + Sbjct: 908 VHDELVLEVPEAELDLVKEKLPQIMEKVDEGMLNVPLVAEVGVGMNW 954 >gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136] gi|189433083|gb|EDV02068.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136] Length = 954 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 98/700 (14%), Positives = 209/700 (29%), Gaps = 159/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPV---MPQVL 57 +D ET +T ++ +F F ++ + + + L Sbjct: 382 DFFSLDTETTGTDPIT----------AELVGMSFSFAENQAFYVPVPANREEALAIVKKL 431 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115 K +EN + N ++ VL +++ T++ + + E Sbjct: 432 KPIIENEKTLKIGQNIKYDMLVLGNY-GVEVR-GPMFDTMIAHYVLQPELHHGMDYLAEV 489 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + +ELI K + +Y D VT ++ K L Sbjct: 490 Y--LKYETIKIEELIG---------PKGKNQKNMRDLSPTSVYKYACEDADVTLKLKKVL 538 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E + E L + + G +D +Q +L++E+ L Sbjct: 539 EKELIENNVNELFQTIEMPLVPVLAYMERNGVRIDTEALKETSQHFTARMKQLEEEVHQL 598 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL S + ++ +R Sbjct: 599 AGM-EFNIASPKQVGEVLFDRLKITDKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR 657 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L +N T + TGR S QN+P + +E Sbjct: 658 -GLKKLLGTYIDALPLLINPKTGHIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKE-- 714 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I EG + AD + IE R++A ++G+ ++ Sbjct: 715 -----------------------IRRAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIE 751 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ G+D++ T A+ + VT++QR+ K G+++ Sbjct: 752 AFQKGQDIHAATAAKIYKEKLEDVTREQRSKAKTANF--------------GIIYGISVF 797 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A + + + + + + V E Sbjct: 798 GLAERLNIE------------------------------RKEAKELIDGYFENYPHVKEY 827 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 ++ + ++ + R D+ + + + Sbjct: 828 MDQSIRLAQE--------------------------KGYIETIFKRKRYLPDINSRNAVV 861 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 R +Q + DI+ M+ K ++L VHDE+ Sbjct: 862 RGY---AERNAINAP------IQGSAADIIKVAMIRIYKRFMEEGIRSKMILQVHDELNF 912 Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + M + + +PL+A+ K + Sbjct: 913 SVVPEEKEKVQHIVISEMEAA--YKMKVPLQADCDWGKNW 950 >gi|119503603|ref|ZP_01625686.1| DNA polymerase I [marine gamma proteobacterium HTCC2080] gi|119460665|gb|EAW41757.1| DNA polymerase I [marine gamma proteobacterium HTCC2080] Length = 909 Score = 409 bits (1050), Expect = e-111, Method: Composition-based stats. Identities = 104/701 (14%), Positives = 191/701 (27%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54 D ET S + ++ A HD + Sbjct: 334 AFDTETTSLDYM----------QAEIVGVALAVATDRAAYIPLAHDYPGAPEQLDRDLVL 383 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L+ LE++ V N ++ VL + + +++ + + Sbjct: 384 TRLRPLLEDSQRAKVGQNLKYDANVLANY-GIALRGIA-HDSMLESYVLDATGS------ 435 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + K L + E + + A Y D VT ++ + Sbjct: 436 --RHDMDTLAL-KYLGEKTTHFEEVAGKGAKQITFNAVAIEQAAPYAAEDAAVTLKLHQT 492 Query: 175 LEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + I G VD L + + L+Q Sbjct: 493 LWPKLESEAYLSTLYRDIELPLVPILSRIERNGARVDRQLLADQSHELGERLAILEQSAH 552 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 L + ++L LF + L + T +T + VL+ P + Sbjct: 553 DLAGQA-FNLGSPKQLGEILFQKLELPVLKKTPKGAPSTAEDVLAELALDYPLPAVLMEY 611 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L + ++ T + TGR S QN+P + Sbjct: 612 R-SLSKLRSTYTDRLPDMIDPGTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRR- 669 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R A EG+ +V AD + IE R++A ++ ++ L Sbjct: 670 ------------------------IRQAFCAPEGRSIVAADYSQIELRIMAHLSQDKGLL 705 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF D++ T A F V V+ DQR K + G++ Sbjct: 706 GAFGANLDVHSATAAEVFGVPLEDVSSDQRREAKAIN--------------FGLIYGMS- 750 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + +++ V++ Sbjct: 751 -----------------------------AFGLAKQLRLGRHEAQAYIDRYFERYPGVAD 781 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + GR L ++ Sbjct: 782 YMTQTRELAHS--------------------------QGYVETLFGRRLYLPEINARN-- 813 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIV 633 R +Q + DI+ M+ + +++ VHDE+V Sbjct: 814 -KQRQMAAERTAINAP------MQGTAADIIKLAMIAVDEWLSKTDIDALMIMQVHDELV 866 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E DT+ S + LM S +PL E + Sbjct: 867 FEVADTEVATLTSAIPDLMADVAS--LDVPLLVEAGVGTNW 905 >gi|329960630|ref|ZP_08298973.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057] gi|328532503|gb|EGF59297.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057] Length = 953 Score = 409 bits (1050), Expect = e-111, Method: Composition-based stats. Identities = 98/700 (14%), Positives = 201/700 (28%), Gaps = 161/700 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58 L ID ET + + ++ +F ++ + + L+ Sbjct: 382 ILSIDTETTGTEPM----------EAELVGMSFSDAENKGYYVPVPPNREEALKIINELR 431 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 EN V N ++ VL+ + + T++ + + E Sbjct: 432 PLYENEKSLKVGQNIKYDMIVLQNY-GVQVR-GALFDTMLAHYVLQPELRHNMDYLAEIY 489 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + ELI K Y D +T ++ LE Sbjct: 490 LH--YQTIHIDELIG---------AKGKNQKNMRDLPAEDVYRYACEDADITLKLKNVLE 538 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + I G +D ++ V ++++ + L Sbjct: 539 KELKEQGAEHLFYEIEMPLVPVLVNIETNGMRLDTEALKQSSEHFTVRLQEIEKNIYELA 598 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF + + T+T T + VL S + ++ R Sbjct: 599 G-ETFNIGSPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRGKHAVIGKILEYR- 656 Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +NS GR+ + + TGR S QN+P +E Sbjct: 657 GLKKLLSTYIDALPQLINSRTGRIHTSFNQAV-TSTGRLSSSNPNLQNIPIRDEDGKE-- 713 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I +G + AD + IE R++A ++ ++ + Sbjct: 714 -----------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNMID 750 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +G D++ T A+ + + +VT D R K G+++ Sbjct: 751 AFLSGHDIHAATAAKIYKIDIEEVTSDMRRKAKTANFG--------------IIYGISVF 796 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A + + + + + +V E Sbjct: 797 GLAER------------------------------LNVSRQEAKELIDGYFETYPQVKEY 826 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 ++ Q + N + R D+ + + + Sbjct: 827 MDKSIQVARE--------------------------NGYVETIFHRKRFLPDINSRNAVV 860 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVC 634 R +Q + DI+ M + K ++L VHDE+ Sbjct: 861 RGY---AERNAINAP------IQGSAADIIKVAMAHIYQRITSNKLKAKMILQVHDELNF 911 Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 P +++ + M + +PLKA+ + Sbjct: 912 SVPASEKELVQQIVIEEMEHA--YRMHVPLKADCGWGNNW 949 >gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685] gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685] Length = 930 Score = 409 bits (1050), Expect = e-111, Method: Composition-based stats. Identities = 109/705 (15%), Positives = 207/705 (29%), Gaps = 168/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S L+ ++ + HD + Sbjct: 354 AFDTETDSLDVLS----------ANLVGISCADAPGQAYYIPLAHDYLDAPAQLDREWVL 403 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 L+ LE+ V V N ++ V+ + + T++ + + + Sbjct: 404 ARLQPLLEDEKVAKVGQNLKYDIGVMARH-GIILRGVA-FDTMLESYVLNSVAGRHDMDS 461 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L + E ++ EY D VT + Sbjct: 462 LAARH------------LDHKTITFEEVAGKGKGQLTFNQIPLEQAAEYAAEDADVTLRL 509 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +RL P+ + L + + G +D + +Q + V L+Q Sbjct: 510 HQRLWPMLESEAGPRHVFCDIDMPLVPVLSRMERTGVLIDSTILGQHSQELAVRLNALEQ 569 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + +L + ++L++ LF + L + T +T + VL + + QV Sbjct: 570 QAHTL-ADEPFNLSSTKQLQSILFDKQQLPILKKTPGGAPSTNEEVLVELAEQGYELPQV 628 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + ++ + L + ++ GR+ + + TGR S QN+P S Sbjct: 629 ILDYRTLAKLKSTYTDKLPQMVSPLTGRVHTSYHQAV-TATGRLSSSDPNLQNIPVRSDE 687 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA G K+V AD + IE R++A ++G+ Sbjct: 688 GRR-------------------------IRQAFIAPAGSKIVAADYSQIELRIMAHLSGD 722 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L+AF G+D++ T A F + VT DQR K + Sbjct: 723 RGLLEAFAAGKDIHRATAAEVFGLPLEAVTADQRRSAKAINF--------------GLIY 768 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + +R + +++ Sbjct: 769 GMS------------------------------AFGLARQLNIGRNEAQRYMDLYFERYP 798 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V Q + GR L ++ Sbjct: 799 GVLAYMERTRQQA--------------------------SEQGYVETLDGRRLYLPEINA 832 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629 + + R +Q + DI+ M+ +++ VH Sbjct: 833 RNAMRR---KAAERAAINAP------MQGTAADIIKRAMIAVDAWLQQSQPQVRMIMQVH 883 Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E P+ S + LM S A +PLK + + + Sbjct: 884 DELVFEVPEALVDEVVSHVRTLMEG--SLALAVPLKVDIGCGENW 926 >gi|327312866|ref|YP_004328303.1| DNA-directed DNA polymerase [Prevotella denticola F0289] gi|326945701|gb|AEA21586.1| DNA-directed DNA polymerase [Prevotella denticola F0289] Length = 920 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 99/698 (14%), Positives = 194/698 (27%), Gaps = 159/698 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQ---VLKE 59 + ID ET S + ++ +F +++ + + + K Sbjct: 350 VSIDTETTSTDAIR----------AELVGLSFSVEENKAFYVPLPANREEALKYVRIFKP 399 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALK 117 EN ++ + N ++ VL + + + T++ + + E L Sbjct: 400 LYENDNILKIGQNIKYDYEVLNNY-GVTLQ-GKMFDTMIAHYLIQPELHHNMDYMAETL- 456 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + +ELI + K + EY D +T + LEP Sbjct: 457 -LGYRTIHIEELIG---------PKGKKQKNMRDLSPTDICEYAAEDADITLRLKHLLEP 506 Query: 178 LSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E L + + G C+D ++I + +QE+ Sbjct: 507 RLKELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEIYKEAG 566 Query: 228 GLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 + +++ LF + + T+T T + VL S + P + N R Sbjct: 567 -ETFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVVRNILNYR-G 624 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + ++ L + +N T + TGR S QN+P + +E Sbjct: 625 MKKLLSTYIDALPKLINPRTGHIHTSFNQAQTATGRLSSSDPNLQNIPVRTDDGKE---- 680 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R C I +G AD + IE R++A ++G++ ++AF Sbjct: 681 ---------------------IRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAF 719 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ T A+ ++ +VT QR K G+ Sbjct: 720 REGHDIHRATAAKIWHEDIDKVTDAQRKKAKQANF--------------GIIYGITTYGL 765 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + + + +V Sbjct: 766 AQR------------------------------MGIPNGEARELIQDYFHTFPKVKAYME 795 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + + R D+ + + T Sbjct: 796 QAKETAR--------------------------AKGYAETLFHRRRYLPDINSRNA---T 826 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 R +Q DI+ M+ K ++L VHDE+ Sbjct: 827 VRGFAERNAINAP------IQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSV 880 Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PL A+ + Sbjct: 881 YPEEREQVERIVIEEMQNACQ--LNVPLTADAGWGSNW 916 >gi|83941853|ref|ZP_00954315.1| DNA polymerase I [Sulfitobacter sp. EE-36] gi|83847673|gb|EAP85548.1| DNA polymerase I [Sulfitobacter sp. EE-36] Length = 932 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 94/715 (13%), Positives = 192/715 (26%), Gaps = 176/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET D+ ++ + + +H Sbjct: 346 YVAVDTETTGLDDMV----------AQLVGVSLCVEPGKACYIPLIHKARGSDDLFGSDD 395 Query: 51 --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 ++L LE+ + + N ++ + L I + T++L+ + Sbjct: 396 LAEGQIPTEEALRLLTPMLEDHSILKIGQNMKYDSKIFAQ---LGINVAPIDDTMLLSYA 452 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + + E L + + + Sbjct: 453 MHAGLHGHGMDTLSERY------------LSHTPIPIKPLLGTGKSAITFDKVPLADAVK 500 Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T +++ +P + E+ L + + G VD ++ Sbjct: 501 YAAEDADITLRLWQLFKPQLHRVGVTKVYETLERPLVSVLAAMERSGVKVDRDTLSRMSN 560 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265 + L+ E+ L + ++L LF E GL +T T VL Sbjct: 561 AFAQKMAGLEDEIYELAGRK-FNVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADVLED 619 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 +V + R S+ + L + +N D T + + TGR + Sbjct: 620 LATEHDLPARVLDWRQ-LSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTGRLASTDPN 678 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S +R +A GK LV D + IE Sbjct: 679 LQNIPIRSEEGRR-------------------------IREAFVAEPGKALVALDYSQIE 713 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A +AF+ G D++ T + F V ++T D R K + Sbjct: 714 LRILAHIANIPELKQAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAIN--------- 764 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ A + Sbjct: 765 -----FGVIYGIS------------------------------GFGLARNLRIPRAEAQG 789 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + ++ + N+ ++ + + G Sbjct: 790 FIDRYFERFPGIRTYMNDTKAFAKE--------------------------HGFVQTLFG 823 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621 R + ++ R +Q + D++ M+ Sbjct: 824 RKIHTPEINAK----GPRAGFAQRAAINAP------IQGTAADVIRRAMIRMPHAIKDLP 873 Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E E + + +M + P + L + + Sbjct: 874 ATMLLQVHDELLFEVEKGAEDDLIAAARQVMENAADPVVKLDVKLDVDAGVGASW 928 >gi|325859715|ref|ZP_08172845.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A] gi|325482641|gb|EGC85644.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A] Length = 920 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 99/698 (14%), Positives = 192/698 (27%), Gaps = 159/698 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQ---VLKE 59 + ID ET S + ++ +F +++ + + + K Sbjct: 350 VSIDTETTSTDAIR----------AELVGLSFSVEENKAFYVPLPANREEALKYIRIFKP 399 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALK 117 EN + + N ++ VL + + T++ + + E L Sbjct: 400 LYENDKILKIGQNIKYDYKVLNNY-GVTLQ-GEMFDTMIAHYLIQPELHHNMDYMAETL- 456 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + +ELI + K + EY D +T + LEP Sbjct: 457 -LGYRTIHIEELIG---------PKGKKQKNMRDLSPTDICEYAAEDADITLRLKHLLEP 506 Query: 178 LSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E L + + G C+D ++I + +QE+ Sbjct: 507 RLKELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEIYKEAG 566 Query: 228 GLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 + +++ LF + + T+T T + VL S + P + N R Sbjct: 567 -ETFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVVRNILNYR-G 624 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + ++ L + +N T + TGR S QN+P + +E Sbjct: 625 MKKLLSTYIDALPKLINPRTGHIHTSFNQAQTATGRLSSSDPNLQNIPVRTDDGKE---- 680 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R C I +G AD + IE R++A ++G++ ++AF Sbjct: 681 ---------------------IRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAF 719 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ T A+ ++ +VT QR K G+ Sbjct: 720 REGHDIHRATAAKIWHEDIDKVTDAQRKKAKQANF--------------GIIYGITTYGL 765 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + + + +V Sbjct: 766 AQR------------------------------MGIPNGEARELIQDYFHTFPKVKAYME 795 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + + R D+ + + T Sbjct: 796 QAKETAR--------------------------AKGYAETLFHRRRYLPDINSRNA---T 826 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 R +Q DI+ M+ K ++L VHDE+ Sbjct: 827 VRGFAERNAINAP------IQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSV 880 Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PL A+ + Sbjct: 881 YPEEREQVERIVIEEMQNACQ--LNVPLTADAGWGSNW 916 >gi|163753855|ref|ZP_02160978.1| DNA polymerase I [Kordia algicida OT-1] gi|161326069|gb|EDP97395.1| DNA polymerase I [Kordia algicida OT-1] Length = 943 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 96/701 (13%), Positives = 207/701 (29%), Gaps = 164/701 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59 + D ET L ++ AF ++ D + + + Sbjct: 372 VCFDTETTGLKALEV----------ELVGIAFSWEKGKGYYVAFPEDQSETTAILEEFRP 421 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLP--SALKAVGE-A 115 E+T + V N ++ VL D+P+ + T++ + + E Sbjct: 422 FFESTTIEKVGQNLKYDIKVLSNY---DMPVKGQLFDTMIAHYLINPDMRHNMDVLSETY 478 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L + E LI + + EY D +T ++ + Sbjct: 479 LNYQPVSIVE---LIGK---------KGKNQLSMRQVPLEQQTEYAVEDADITYQLKEHF 526 Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L + + G +D L++ + V+ +L++++ Sbjct: 527 IKELESGHLTKLFSDVEVPLVSVLSAMEIEGINLDPDFLGELSKALAVDIDRLEKDIYEQ 586 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280 + ++L LF + L T+ +T + VLS K + Sbjct: 587 AG-EEFNIGSPKQLGPILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHQIVADIL-EW 644 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + + ++ L +N T+ + TGR S QN+P + Sbjct: 645 RQYRKLQSTYVDALPNEINPKTNRIHTVYAQAVAATGRLSSNNPNLQNIPIRTERGR--- 701 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 VR + E L+ AD + IE R++A ++ E + Sbjct: 702 ----------------------QVRKAFVPRDENYVLLAADYSQIELRIIAALSKEDTMM 739 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ G D++ +T +R FNV +VT++QR+ K + + G++ Sbjct: 740 QAFKDGADIHASTASRVFNVPLEEVTREQRSNAKTVNFGII--------------YGVSA 785 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 ++ + + + + + + ++ Sbjct: 786 FGLSNQTD------------------------------LTRSESKELIDTYYETYPKLKA 815 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + N + GR +D+ + + Sbjct: 816 YMSNQVAFARE--------------------------NGYVETVLGRRRYLKDINSRNAI 849 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + + +Q + DI+ M+N ++L VHDE+V Sbjct: 850 VRGAAERN---------AVNAPIQGSAADIIKLAMINIYNRFEEEGFKSKMLLQVHDELV 900 Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + ++ M + +PL E + + Sbjct: 901 FDAHKDELEIIKPIIKEEMENAFK--MEVPLDVEIGVGQNW 939 >gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1] gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1] Length = 948 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 102/700 (14%), Positives = 214/700 (30%), Gaps = 162/700 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKE 59 + D ET LT ++ AF ++ D + +VL+ Sbjct: 377 VCFDTETTGLNPLT----------AELVGIAFSWETGKGFYVPFPEDKNEAQELIEVLRP 426 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE-AL 116 EN ++ + N ++ VL N+++ + T++ + + E L Sbjct: 427 FFENDNIEKIGQNLKYDIKVLAKY-NVEVK-GKLFDTMLAHYLINPDMRHNMDVLAETYL 484 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + E LI + EY D +T ++ + E Sbjct: 485 NYTPISITE---LIGK---------KGKNQLSMREVPLDKQTEYAVEDADITLQLKEHFE 532 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + + G +D ++L++ ++ + L++ + Sbjct: 533 KELGEANTQKLFNDIELPLLRVLAAMELEGINLDKDFLNSLSEELNTDIANLEKSIYEAA 592 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L LF + L T+ +T + VLS K QV + R Sbjct: 593 G-EEFNIASPKQLGVILFEKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHKIIQQVLDFR- 650 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ ++ L ++ T + TGR S QN+P + Sbjct: 651 GLSKLKSTYVDALPLQVDESTGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGR---- 706 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 VR + E L+ AD + IE R++A ++ E+ ++ Sbjct: 707 ---------------------QVRKAFVPRDENHILLAADYSQIELRIIAALSKEETMIE 745 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ GED++ +T ++ FNV +VT++QR+ K + + Y + + Sbjct: 746 AFKNGEDIHASTASKVFNVPITEVTREQRSNAKTVNFGIIY-----GVSAFGLSNQTD-- 798 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + + + ++ Sbjct: 799 -------------------------------------LSRSEAKELIETYYATYPKLRAY 821 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 +E N + GR +D+ + + + Sbjct: 822 MSEQVDFARD--------------------------NGYVQTVLGRRRYLKDINSRNAVV 855 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 + +Q + DI+ M+N K ++L VHDE+V Sbjct: 856 RGAAERN---------AVNAPIQGSAADIIKIAMINIYKKLQTGAYKTKMLLQVHDELVF 906 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + ++ M + +PL + + Sbjct: 907 DVYKPELEGLKNLIKTEMENAYE--LSVPLDVDLDIGANW 944 >gi|86140808|ref|ZP_01059367.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217] gi|85832750|gb|EAQ51199.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217] Length = 948 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 98/704 (13%), Positives = 209/704 (29%), Gaps = 162/704 (23%) Query: 1 MAT--LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MP 54 M + D ET L ++ AF ++ + + Sbjct: 372 MKQTSVCFDTETTDLDPL----------QAELVGIAFSWEKTKGFYVPFPSEKEEVQKLI 421 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112 + L+ E ++ + N ++ VL ++++ + T++ + + Sbjct: 422 EALRPFFEAEEIEKIGQNLKYDIKVLAKY-DVEVK-GKLFDTMIAHYLINPDMRHNMDVL 479 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E + +ELI + K EY D VT ++ Sbjct: 480 AETY--LNYTPVSIEELIGK---------KGKNQKSMADVPVDQQTEYAVEDADVTLQLK 528 Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + E L + + G +D +L++ ++ + L++ + Sbjct: 529 EHFQKELGEANTQKLFDEIEIPLVQVLADMELEGINLDQEFLGSLSEALNNDIASLEKSI 588 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277 + ++L LF + L T +T + VLS V Sbjct: 589 YEEAG-EEFNIGSPKQLGEILFDKLKLVDKPKKTRTGQYSTAEDVLSYLAPDHEIVQHVL 647 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + R S+ ++ L +N+ T + TGR S QN+P + Sbjct: 648 DYR-GLSKLKSTYVDALPAQVNAKTGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGR 706 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQ 396 VR + E L+ AD + IE R++A ++ E+ Sbjct: 707 -------------------------QVRKAFVPRNEDYVLLAADYSQIELRIIAALSQEE 741 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +KAF+ GED++ +T A+ FNV +VT++QR+ K + + Y + Sbjct: 742 TMMKAFQEGEDIHASTAAKVFNVPIDEVTREQRSNAKTVNFGIIY-----GVSAFGLSNQ 796 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + + + Sbjct: 797 TD---------------------------------------LTRSESKELIDTYYKTYPK 817 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + +E + N + GR +D+ ++ Sbjct: 818 LRNYMSEQVDFARE--------------------------NGYVSTVLGRRRYLKDINSS 851 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + + + +Q + DI+ M+ ++L VHD Sbjct: 852 NAVVRGAAERN---------AVNAPIQGSAADIIKIAMIKIHHKLKDKGLRTKMLLQVHD 902 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V + ++ ++ M +PL E + Sbjct: 903 ELVFDVYKSELEEVQELIKSEMEHAFK--LDVPLDVEVGLGDNW 944 >gi|332291323|ref|YP_004429932.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5] gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5] Length = 949 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 109/700 (15%), Positives = 220/700 (31%), Gaps = 163/700 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59 + D ET L ++ AF ++ + + L+ Sbjct: 379 VCFDTETTGLDPLV----------AELVGIAFSWEAGKGYYIPFPESKEEAQALIEELRP 428 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE-AL 116 ENT + + N ++ VL N+ + + T++ + + E L Sbjct: 429 FFENTAIEKIGQNLKYDIKVLAKY-NVKVK-GKLFDTMLAHYLINPDMRHNMDVLAETYL 486 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + E LI + K + EY D +T ++ + E Sbjct: 487 NYTPVSITE---LIGK---------KGKNQKSMRDVSVDDQTEYAVEDADITLQLKQHFE 534 Query: 177 PLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + + G +DV+ +L+ ++ + +L E+ + Sbjct: 535 KELDEAGTRKLFDDIEIPLLRVLAAMEVEGINLDVSFLQSLSGDLNADIERLTSEIFAEA 594 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L LF + L T+ +T + VLS K +V + R Sbjct: 595 G-EEFNIGSPKQLGEILFDKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHDIIQKVLDYR- 652 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ ++ L E + DGR+ A+ TGR S QN+P + Sbjct: 653 GLSKLKSTYVDALPEQVAQDGRVHTDYMQTVAA-TGRLSSNNPNLQNIPIRTERGR---- 707 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 VR + E L+ AD + IE R++A ++ E+ ++ Sbjct: 708 ---------------------QVRKAFVPRDENHTLLAADYSQIELRIIAALSEEENMIQ 746 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF GED++ +T A+ FNV +VT++QR+ K + + G++ Sbjct: 747 AFTDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGII--------------YGVSAF 792 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 ++ + + + + + ++ Sbjct: 793 GLSNQTD------------------------------LSRGEAKELIDNYYKSYPKLRNY 822 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 +EL + + N + R + ++ + Sbjct: 823 MSELVEFARE--------------------------NGYVKTVLDRRRYLNGINSSNGVV 856 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 + +Q + DI+ M+N + ++L VHDE+V Sbjct: 857 RGAAERN---------AVNAPIQGSAADIIKIAMINIFEKLENSDYKTKMLLQVHDELVF 907 Query: 635 ETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + P+ + + M S A +PL E + + Sbjct: 908 DVPNDELDAIKELIKTEMESAFKMA--VPLDVEVGLGQNW 945 >gi|83855330|ref|ZP_00948860.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1] gi|83843173|gb|EAP82340.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1] Length = 932 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 95/715 (13%), Positives = 194/715 (27%), Gaps = 176/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET D+ ++ + + +H Sbjct: 346 YVAVDTETTGLDDMV----------AQLVGVSLCVEPGKACYIPLIHKARGSDDLFGSDD 395 Query: 51 --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 ++L LE+ + + N ++ + L I + T++L+ + Sbjct: 396 LAEGQIPTEEALRLLTPMLEDPSILKIGQNMKYDSKIFAQ---LGINVAPIDDTMLLSYA 452 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + + E L + + + Sbjct: 453 MHAGLHGHGMDTLSERY------------LSHTPIPIKPLLGTGKSAITFDKVPLADAVK 500 Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T +++ +P + E+ L + + G VD ++ Sbjct: 501 YAAEDADITLRLWQLFKPQLHRVGVTKVYETLERPLVPVLAAMERSGVKVDRDTLSRMSN 560 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265 + L+ ++ L + ++L LF E GL +T T VL Sbjct: 561 AFAQKMAGLEDDIYELAGRK-FNVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADVLED 619 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 +V + R S+ + L + +N D T + + TGR + Sbjct: 620 LATEHDLPARVLDWRQ-LSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTGRLASTDPN 678 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S +R +A GK LV D + IE Sbjct: 679 LQNIPIRSEEGRR-------------------------IREAFVAEPGKALVALDYSQIE 713 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A +AF+ G D++ T + F V ++T D R K + Sbjct: 714 LRILAHIANIPELKQAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAIN--------- 764 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ A + Sbjct: 765 -----FGVIYGIS------------------------------GFGLARNLRIPRAEAQG 789 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + ++ + N+ ++ + + G Sbjct: 790 FIDRYFERFPGIRTYMNDTKAFAKE--------------------------HGFVQTLFG 823 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621 R + ++ S R +Q + D++ M+ Sbjct: 824 RKIHTPEI----SAKGPRAGFAQRAAINAP------IQGTAADVIRRAMIRMPDAIKDLP 873 Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E E + + H+M + P + L + + Sbjct: 874 ATMLLQVHDELLFEVEKGAEDDLIAAARHVMENAADPVVKLDVKLDVDAGVGASW 928 >gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578] Length = 897 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 113/702 (16%), Positives = 196/702 (27%), Gaps = 165/702 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP-------Q 55 + +D ET LT ++ + D+ V P + Sbjct: 328 VVAVDTETDGLDPLTC----------RLVGVSLAVDEGRACYVPLAAPDVRPLPADVVRE 377 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112 VL L + V+ V N F+ VL+ P + T+V A L + Sbjct: 378 VLTPLLASQKVSKVGQNLKFDYHVLRRWGVR--PEGPFFDTMVAAWLLESDAGRYNLDRL 435 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E G I E G Y D + + Sbjct: 436 AEKY--------LGWRTIHYKDVVEKGA-------SFETVPVAEAGVYAAEDADIALRLS 480 Query: 173 KRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L+ E L + + + G +D + +D + ++ E+ Sbjct: 481 RVLKERLEAGDLGRVFYEMEMPLLSILARMEEWGIGLDGEALSAFGRELDERISNIENEI 540 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279 L + ++L+ LF+E GL T+ +T VL P A +V Sbjct: 541 FDLVGH-EFNVGSTKQLQEVLFVERGLPPVKKTKTGFSTDTSVLEELAAQDPVAAKVLEY 599 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ ++ L +N + T + TGR S QN+P + Sbjct: 600 R-SLTKLKNTYVDVLPGLVNPETGRLHTWFSQVGTATGRLSSKDPNLQNIPIKTEEGRR- 657 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R + G + AD + IE +LA ++G+ Sbjct: 658 ------------------------IREAFVPQRGWWFLSADYSQIELVILAHLSGDPALC 693 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T + F V P VT +QR I K + G++ Sbjct: 694 RAFREGEDVHRATGSLLFGVPPETVTPEQRRIAKTINF--------------GVIYGMS- 738 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + E ER A+ ++ V Sbjct: 739 -----------------------------AFRLSRELGIPRKEAERFINAYFTTYAGVRA 769 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + E G GR + + Sbjct: 770 F---IERTIAEAEEKGYVTTL-----------------------FGRKRPLPYITSRN-- 801 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633 T R +Q DI+ M++ ++L VHDE++ Sbjct: 802 -KTQKTGAERIA------VNTPIQGSGADIIKLAMIDLDAQMRRMGLASRMILQVHDELI 854 Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674 E P + L M +PL+ E + + Sbjct: 855 FEVPPEELEVMKRLVRERMEGVVR--LSVPLRVEIGVGRNWG 894 >gi|225023896|ref|ZP_03713088.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC 23834] gi|224943370|gb|EEG24579.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC 23834] Length = 928 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 111/706 (15%), Positives = 206/706 (29%), Gaps = 166/706 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52 + ID ET S A + ++ + F H Sbjct: 350 KIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 399 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110 + LK LEN + + N +++ V + + ++ + L Sbjct: 400 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 457 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + E G E I E+ + A EY D Sbjct: 458 ELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIEQATEYAAQDADFALR 505 Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L E + + + G +D A + + E KL+QE Sbjct: 506 LDAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQE 565 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAIQ 275 + + ++L+ LF + G+ + L + +T + VL P Sbjct: 566 AYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKI 624 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 625 ILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRTA 682 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 VR A +G +V AD + IE R++A ++G Sbjct: 683 EGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLSG 717 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ + AF+ GED++ T A F +AP V+ +QR K + Sbjct: 718 DKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTIN--------------FGLI 763 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ A + ++ + + ++ Sbjct: 764 YGMGQYGLAKSLGIDNLS------------------------------AKTFIDRYFARY 793 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V+E + + GR L D+ Sbjct: 794 PGVAEYMQRTKEQA--------------------------AAQGYVETLFGRRLYLPDIR 827 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628 N + R +Q + D++ M++ ++ +++ V Sbjct: 828 NKNA---NARAGAERAAINAP------MQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQV 878 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E P+ + L +M +PL AE + Sbjct: 879 HDELVLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 924 >gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306] gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306] Length = 934 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 98/705 (13%), Positives = 186/705 (26%), Gaps = 169/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 D ET S L +I + + H Sbjct: 359 AFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHNFPGVPVQLDRTQAL 408 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 L L + V + + ++ V++ +++ + TL+ + + + Sbjct: 409 AQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDMDS 466 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + G + + E + P + + Y D +T + Sbjct: 467 LAKRY--------LGYDTVKY----EDVCGKGAKQIPFAQISLEDATRYAAEDADITLRL 514 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E L + I G CVD A + Q Sbjct: 515 HRVLGPRLASEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQRADLSKRMLAAQQ 574 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF E L +T + L + + Sbjct: 575 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 633 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L E ++ GR+ + GA+ TGR S QN+P + Sbjct: 634 LEYR-GLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 691 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G+KL+ D + IE R++A ++G+ Sbjct: 692 GRR-------------------------IRRAFVAPPGRKLIACDYSQIELRIMAHLSGD 726 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+G D++ T A F V+ D+R K + Sbjct: 727 PGLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINF--------------GLMY 772 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + + ++ Sbjct: 773 GMS------------------------------AFGLARQLGIGRGEAQDYIALYFSRYP 802 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + Q + GR L + Sbjct: 803 GVRDFMETTRQQARD--------------------------KGYVETVFGRRLYLDFI-- 834 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 + R +Q + DI+ M+ ++L VH Sbjct: 835 -NAGSQGQRAGAERAAINAP------MQGTAADIIKRAMVKVDGWIADHAQRAKMILQVH 887 Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E S + M +PL + + Sbjct: 888 DELVFEADIDFVDTLLSEVTTRMAGAAE--LRVPLVVDSGVGDNW 930 >gi|89054174|ref|YP_509625.1| DNA polymerase I [Jannaschia sp. CCS1] gi|88863723|gb|ABD54600.1| DNA polymerase I [Jannaschia sp. CCS1] Length = 929 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 107/715 (14%), Positives = 204/715 (28%), Gaps = 177/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + D ET S ++T ++ + + +H Sbjct: 344 EVAFDTETTSLNEMT----------AELVGVSLCIEPGAACYIPLLHRGGGDDLFADTSL 393 Query: 51 -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 ++L+ LE+ V VA N+ ++ VL + + T++L+ + Sbjct: 394 AEGQIPFDDAMEILQPMLEDRSVMKVAQNAKYDVKVLANY---GVEVAPIDDTMLLSYAL 450 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + E K LI R Y Sbjct: 451 HAGLHNHGMDGLAERY--LGHTPLPIKSLI----------GSGKSQITFDRVPIADAAPY 498 Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T K +P + E+ L + + G VD + ++ Sbjct: 499 AAEDADITLRFHKLFKPKLHQVGVTKVYERLERPLVPVLARMERSGIKVDKDVLSRMSNA 558 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSN 266 + L+ E+ L + +L LF + GL +T +L Sbjct: 559 FAQKMAGLEAEIHELAG-ESFNVGSPAQLGEILFDKMGLQGGKKGKTGKYSTGADILEDL 617 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFP 325 +V + R S+ + L + +N+D GR+ + GA+ TGR + Sbjct: 618 ATEHDLPGRVLDWRQ-LSKLKSTYTDALQDHINADTGRVHTSYSIAGAN-TGRLASTDPN 675 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S +R +A GK LV D + IE Sbjct: 676 LQNIPIRSEEGRR-------------------------IREAFVAEPGKVLVALDYSQIE 710 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +AG AF+ G+D++ T + FNV ++T D R K + Sbjct: 711 LRILAHIAGIDALKDAFKDGQDIHAATASEMFNVPLEEMTPDVRRQAKAIN--------- 761 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ A + Sbjct: 762 -----FGVIYGIS------------------------------GFGLARNLRIPRAEAQG 786 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + ++ + ++ + ++ NL + G Sbjct: 787 FIDRYFERFPGIRTYMDDTKKFAKE--------------------------NLYVQTLFG 820 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621 R + ++ R +Q + DI+ M+ A Sbjct: 821 RKIHTPEINAK----GPGAGFAGRAAINAP------IQGTAADIIRRAMIRMEDAIEGIP 870 Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673 ++L VHDE+V E + + +M A +P+ + + + + Sbjct: 871 AKMLLQVHDELVFEVDEDATDTLIARAREVMEGAADPAVHLSVPITVDAGQGETW 925 >gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2] gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2] Length = 907 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 103/705 (14%), Positives = 197/705 (27%), Gaps = 164/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 + +D ET D ++ +F H H Sbjct: 330 DLVCLDTETTGLD----------VMDARLVGMSFAITPHEAAYLPLAHRYPGVPDQLDLD 379 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111 L+ LE+ + N +++ + + + TL+ + + Sbjct: 380 ATLARLRPWLESEQHKKLGQNLKYDKHIFANH-GIALRGIS-DDTLLESYVLESHKSHDM 437 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 AL+ K E + + + Y D +T ++ Sbjct: 438 DSLALRHLGVKTIS----------YEEVAGRGAKQICFDQVDLDIATRYAAEDADITLQL 487 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E + + G +D L H + + V+ L+ Sbjct: 488 HQSLAPEITGKTGLQHVYRDIELPAMQVLFVMERNGVLLDANLLHVQSHELGVKLIALEA 547 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276 + ++++ LF + L ++ T + T + VL P + Sbjct: 548 RAHE-AAEQPFNLNSPKQIQEILFDKLKLPVKKKTPSGAPSTDEEVLQELALDYPLPKIL 606 Query: 277 FNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L + +N + GR+ + A TGR + QN+P S Sbjct: 607 LEYR-GMAKLKSTYTDKLPKMVNRATGRVHTSYSQAVA-VTGRLASSDPNLQNIPIRSAE 664 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA G +V AD + IE R++A ++G+ Sbjct: 665 GRR-------------------------IREAFIAPSGSCIVAADYSQIELRIMAHLSGD 699 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L+AF ED++ T A F P VT +Q Sbjct: 700 AGLLQAFAKNEDVHRATAAEIFMTTPVDVTTEQ--------------------------- 732 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + NF + A + A + + ++ Sbjct: 733 -----------------RRYAKVINFGLIYGMSAFGLAKQLGIERGAAQAYIARYFARYP 775 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + + + +Q + GR L ++ + Sbjct: 776 GVRDYMDSTREQAKQ--------------------------QGYVETVFGRRLWLPEINS 809 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 + + R +Q + D++ M+ K +++ VH Sbjct: 810 SNAMKRQ---GAERAAINAP------MQGTAADLIKLAMIQVQGWLETEKLKTRLIMQVH 860 Query: 630 DEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E PD + L LM +PL E K + Sbjct: 861 DELVLEVPDDELSLIKASLPGLMCHVA--NLNVPLLVEVGSGKNW 903 >gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1] Length = 962 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 100/701 (14%), Positives = 204/701 (29%), Gaps = 160/701 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLK 58 + D ET + ++ +F C D + + Sbjct: 388 EISFDTETTGLDP----------NEAELVGLSFCITKGEAYYVPCPADRNECIQLLNNFQ 437 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAV-GEA 115 N +T V N ++ +LK ++ T++ ++ + + Sbjct: 438 PLFNNASITWVGQNIKYDLLMLKWY-GFELQ-GNIFDTMLAHYVIEPDGKSSMDLLSAKF 495 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L + E LI + EY D +T ++ Sbjct: 496 LGYQPVSITE---LIGK---------KGKGQGNMRDIEIEKIKEYAAEDADITLQLKNVF 543 Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 PL KEQ L + + G +D + ++ + + +Q + Sbjct: 544 LPLIKKEQVEKVFAEVENPLVKVLTNMEFEGIRIDEQFLKDYSIVLQKDAMEFEQSVYEQ 603 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + ++L LF + L + T+T T + VL+ + + R Sbjct: 604 AGVK-FNLASPKQLGEVLFDKMKLDPKAKKTKTGQYATGEDVLAKLANQHKICNDILSFR 662 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ ++ L + +NS T + TGR S QN+P + E Sbjct: 663 -ELTKLKNTYVDALPQLINSKTGRVHTSYAQAVAVTGRLSSTNPNLQNIPVRTERGRE-- 719 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I E LV AD + IE R++A ++ + Sbjct: 720 -----------------------IRKAFIPRDENHVLVSADYSQIELRIVAAISADVNMC 756 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+TG+D++ T A+ FNV ++VTK+ R K + + Sbjct: 757 EAFKTGKDIHTATAAKVFNVEESEVTKEMRYKAKSVNFGII------------------- 797 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + A T + + ++++ + + Sbjct: 798 -------------------------YGQGAFGLADNLGISRTEAKAIIDNYKKQFPNIQQ 832 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + ++T + GR +D+ + Sbjct: 833 YMDNTINFAKET--------------------------GYVETLMGRKRWLKDINSANF- 865 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 T R +Q + D++ M+ A ++L VHDE+V Sbjct: 866 --TVRGFAERNAINSP------IQGTAADMIKLAMIKIDAAFKAHHFKSKMLLQVHDELV 917 Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + ++ M + +P AE + + + Sbjct: 918 FDVLKEELEKVKPVILDCMQHALALPNDVPTNAEIGDGENW 958 >gi|319406408|emb|CBI80048.1| DNA polymerase I [Bartonella sp. 1-1C] Length = 968 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 100/715 (13%), Positives = 211/715 (29%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49 D ET S + ++ F+ H Sbjct: 380 YFSFDTETTSLNPM----------QAKLVGFSLALQPGKAAYVPLEHVAEEDNLLGGGRI 429 Query: 50 -----DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN- 103 +LK LEN V + N ++ V+K +I + + T++L+ + Sbjct: 430 VPQIETQKALALLKPILENQAVLKIGQNIKYDWLVMKQH---NIVMCSFDDTMLLSYALE 486 Query: 104 --GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G + I+ + + R + Y Sbjct: 487 AGISTHGMDVLSERW--------LGHKPISY----KDLTHSRRKIVSFARVDLKQATLYA 534 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D +T +++ L+P ++ L + + +RG VD + L+ + Sbjct: 535 AEDADITLRLWQVLKPQLVAQKMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGEL 594 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK 267 L +E+ L + ++L LF + GL T++ T + L Sbjct: 595 AQTVLNLGEEIYQLVG-EKFNIASPKQLGDILFGKMGLPGGTKTKSGQWSTSAQTLEELA 653 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L + T L + TGR S Q Sbjct: 654 AEGHILPRKIIDWRQLTKLKSTYTDALPSYILPTTGRVHTNYSLATTLTGRLSSSEPNLQ 713 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ +AS+G L+ AD + IE R Sbjct: 714 NIPVRTAEGRK-------------------------IRAAFVASKGHLLLSADYSQIELR 748 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA +A +AF G+D++ T ++ F VA +T + R K + Sbjct: 749 ILAHVADITALKEAFAKGQDIHAMTASQMFGVAVEGMTSEIRRRAKAINF---------- 798 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A Sbjct: 799 ----GIIYGISPFGLASQ------------------------------LGISRKEASDYI 824 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + + GR Sbjct: 825 QLYFERFPGIEDYMERTKIFAR--------------------------HYGYVETIFGRR 858 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 + Y ++ ++ R +Q + DI+ M+ A Sbjct: 859 IHYPEIKTDKP---QIRSFNERAAINAP------IQGSAADIIRRAMIQMENALEKERLS 909 Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P ++ + ++ +M + P+ + +PL+ + ++ + Sbjct: 910 AKMLLQVHDELIFEVPKSESKKTTILIKKVMENATMPALSLSVPLEVKVIAAQNW 964 >gi|134292957|ref|YP_001116693.1| DNA polymerase I [Burkholderia vietnamiensis G4] gi|134136114|gb|ABO57228.1| DNA polymerase I [Burkholderia vietnamiensis G4] Length = 917 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 116/703 (16%), Positives = 203/703 (28%), Gaps = 166/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +T ++ +F + H + Sbjct: 343 AFDTETTSLDPMT----------ARLVGLSFSVEPGKAAYLPVAHRGPDLPEQLPLDDVL 392 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113 LK LE D V + ++ VL DI ++ TL+ + Sbjct: 393 ARLKPWLEAADRKKVGQHLKYDAQVLANY---DIALNGIEHDTLLESYVLESHRTHDMDS 449 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ K K E + A Y D +T ++ Sbjct: 450 LALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALDQAAAYAAEDADITLQLHH 499 Query: 174 RLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E + + + + G +D AL H + + +L+ + Sbjct: 500 VLYPQIAREAGLERVYREIEMPVSLVLRKMERTGVLIDDALLHAQSNEIATRLIELEGQA 559 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + +++ F + L + T + T + VL + P + Sbjct: 560 YELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLE 618 Query: 279 NRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R S+ + L +N GR+ A TGR + QN+P + Sbjct: 619 HR-GLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNEPNLQNIPVRTAEGR 676 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R IAS G ++V AD + IE R++A ++G+ Sbjct: 677 R-------------------------IREAFIASPGHRIVSADYSQIELRIMAHISGDAS 711 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L+AF GED++ T A F V P +V DQR I KV+ G+ Sbjct: 712 LLRAFAHGEDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIYGM 757 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A A + + ++ V Sbjct: 758 S------------------------------AFGLASNLGITRDAAKLYIDRYFARYPGV 787 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 ++ + A + + GR L ++ Sbjct: 788 AQYMEDTRAAAKD--------------------------QGYVETVFGRRLWLPEINGGN 821 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631 R +Q + D++ M+ + +++ VHDE Sbjct: 822 GPRRQA---AERAAINAP------MQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDE 872 Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E PD + L +M +PL AE + Sbjct: 873 LVLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913 >gi|121604384|ref|YP_981713.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2] gi|120593353|gb|ABM36792.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2] Length = 941 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 117/698 (16%), Positives = 216/698 (30%), Gaps = 155/698 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + +D ET S ++ ++ +F HD + Sbjct: 367 VAVDTETTSLDEMR----------AQIVGVSFSVTPGEAAYIPLTHDYPSAPEQLPLDEV 416 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKA 111 LK LEN + N ++R V +++ + T++ + + P L + Sbjct: 417 LARLKPWLENPARPKLGQNIKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEVTKPHGLAS 474 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E G+ I E ++ EY D T ++ Sbjct: 475 LAERH--------VGRSGINY----EDLCGKGVHQIKFNQVDIARAAEYSCEDSDQTLDV 522 Query: 172 FKRLEPLSSKEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P ++L ++ Q I G +D + + + +L+ E Sbjct: 523 HRVLWPQLQANEKLLFIYQLEMQSSETLYRIERNGVLIDAPMLARQSHELGQRLLQLETE 582 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 + + ++L F + G+ + T + T + VL + P ++ Sbjct: 583 AYEMAGQP-FNLGSPKQLAEIFFDKLGMKVVKKTPSGARSTDEDVLEKLAEDHPLPAKLL 641 Query: 278 NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R S+ + L + N GR+ A TGR S QN+P + Sbjct: 642 EHR-SLSKLKGTYTDKLAQLANPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPVKTAEG 699 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 VR +A G + AD + IE R++A ++G++ Sbjct: 700 RR-------------------------VREAFVAPAGSVIASADYSQIELRIMAHISGDE 734 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G D++ T A F VA QV+ +QR KV+ L Y Sbjct: 735 SLLHAFTAGLDVHRATAAEVFGVALEQVSSEQRRYAKVINFGLIYGMS-----SFGLAKN 789 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L + T A + + + +++ ++ E + G R Sbjct: 790 LGIETKAAAAYIDRYFQRYPGVKHYMDSTRQLAKEQGYVETVFGR---------RLLLPE 840 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 ++ P+G G Sbjct: 841 INS-------------------------------------------PNGPRRA----GAE 853 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 R+ +N + KL+ VQ +++A K G +++ VHDE+V E Sbjct: 854 RAAINAPMQG---TAADLIKLSMVKVQ---------QVLDAEKRGTKMIMQVHDELVFEV 901 Query: 637 PDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + + LM +PL AE + Sbjct: 902 PEAEVEWVRTEIPRLMAGVAE--LKVPLLAEIGFGPNW 937 >gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3] gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3] Length = 892 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 111/705 (15%), Positives = 205/705 (29%), Gaps = 169/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 D ET + + ++ + + H + Sbjct: 317 AFDTETTALDPMK----------ARLVGISLALEPDEAFYIPVGHAYEGAPVQLDRDAVL 366 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++L A ENT +T + N ++ TVL C I T++ A L Sbjct: 367 RILAPAFENTKITKIGQNVKYDWTVLSRC-GFKID-GPVFDTMIAAYLLNPTRRSYGLDR 424 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + +I+ + K Y D +T + Sbjct: 425 LAADY--------LNHRMISY----QDVTGTGKNAKCFSAVPLEEAIPYAAEDADITFSL 472 Query: 172 FKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + LE + E L + + G VD L++ ++ + KL+ E Sbjct: 473 HRLLEKELKQGGLFELLETIEMPLVPVLMHMEMAGVAVDREALAALSKELEGQLEKLEGE 532 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHL-----EDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L LF + GL + +T VL++ + Sbjct: 533 IYGLAG-ETFNINSPQQLGVILFEKLGLPTQKKTKKKTGYSTDADVLTTLADHHELPALL 591 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 +R ++ + L E + + GR+ + A+ TGR S QN+P + Sbjct: 592 LRHR-TLAKLKSTYADALAELILPETGRIHTSFNQ-TATATGRLSSTDPNLQNIPIRTEE 649 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R + G V AD + +E R+LA + + Sbjct: 650 GR-------------------------QIRKAFVPRPGWTFVSADYSQVELRILAHYSQD 684 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 ++AFE ED++ T + F + P +T+D R K + Sbjct: 685 PILIEAFENDEDIHTRTASEVFQLFPEMITEDVRRQAKAINF--------------GIVY 730 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + ++ ++S Sbjct: 731 GISPFGL------------------------------ARDLGISQKMAKNYMDSYFSRYS 760 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 RV E ++ +T + GR D+ + Sbjct: 761 RVKEFMDKAIADARETGQTR--------------------------TMFGRIRYLPDIDS 794 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVH 629 T R +Q + DI+ M+ KA ++L+VH Sbjct: 795 PN---RTLQGYAERAAINTP------IQGTAADIMKLAMIATEKALAKEKLVSVMLLSVH 845 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 DEIV E P + S L +M + A LK + + Sbjct: 846 DEIVLECPPDEVKTVSALVADIMENVCDLAVR--LKVNVAQGSNW 888 >gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87] gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87] Length = 941 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 98/702 (13%), Positives = 211/702 (30%), Gaps = 162/702 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD----CVHDPVMPQVL 57 ++ D ET S L + ++ AF ++ + ++L Sbjct: 368 KSVCFDTETTSLNPL----------EAQLVGIAFSWEGGKGYYLPFEDNIEKTQQLIELL 417 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE- 114 + E+ ++ + N ++ VL + + T++ + + E Sbjct: 418 RPFFESPEIEKIGQNLKYDIKVLDKY-GIKVE-GPTFDTMIAHYLINPDMRHNMDILAET 475 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L + Q + E LI + K EY D +T ++ + Sbjct: 476 YLNYTPQPISE---LIGK---------KGKNQKSMRDVPLAEQTEYAAEDADITFQLKEF 523 Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E E L + + G +D+ L++ +D + +L+ ++ Sbjct: 524 FEKELDEAKTRKLFNEIEMPLVEVLADMEIEGINLDLDFLKKLSEALDRDIKELEAKIYE 583 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 ++L LF + L T+ +T + VLS V + Sbjct: 584 AAG-EEFKISSPKQLGIILFEKLALVKKPKKTKTGQYSTSEDVLSYLAPEHEIVQHVLDY 642 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + ++ L + T + TGR S QN+P + Sbjct: 643 R-GLVKLQNTYVDALPGQVEKSSGRVHTDYVQTIAATGRLSSNNPNLQNIPIRTERGR-- 699 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398 VR I + L+ AD + IE R++A ++ E+ Sbjct: 700 -----------------------QVRKAFIPRSDDYVLLAADYSQIELRIIAALSEEETM 736 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +KAF+ GED++ +T ++ FNV +VT++QR+ K + + Y + + Sbjct: 737 IKAFKDGEDIHASTASQVFNVPLEEVTREQRSNAKTVNFGIIY-----GVSAFGLSNQTS 791 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + + + + + ++S Sbjct: 792 ---------------------------------------LSRSESKELIDTYYKTYPKLS 812 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + + GR +D+ + + Sbjct: 813 NYIADQVAYARE--------------------------HGYVSTILGRRRYLKDINSQNA 846 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632 + + +Q + DI+ M+N K ++L VHDE+ Sbjct: 847 VVRGAAERN---------AVNAPIQGSAADIIKIAMINIHKKLGEEKLQTKMLLQVHDEL 897 Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 V + + + M + + +PL + + + Sbjct: 898 VFDVYKPELDQVKKLIKSEMENA--YQLNVPLDVDLGVGQDW 937 >gi|254511729|ref|ZP_05123796.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium KLH11] gi|221535440|gb|EEE38428.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium KLH11] Length = 933 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 85/714 (11%), Positives = 186/714 (26%), Gaps = 176/714 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL------ 57 + +D ET ++ ++ + + H L Sbjct: 348 VAVDTETTGLNEMI----------ADLVGISLCIEPGEACYIPLTHRESATDDLFGSDAL 397 Query: 58 --------------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 K E++ + + N ++ + + + T++++ + Sbjct: 398 AEGQMPLDEALTLLKPVFEDSSILKIGQNMKYDAKIFARY---GVNVVPIDDTMLMSYAM 454 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + E L + + Y Sbjct: 455 HGGKHGHGMDTLSERY------------LSHTPIPIKPLLGSGKSAITFDKVPIDEATAY 502 Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T ++K +P + E+ L + + G VD + ++ Sbjct: 503 AAEDADITLRLWKLFKPQLHQVQVTTVYETLERPLVPVLAEMEMNGIKVDRDVLSRMSNA 562 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSN 266 + L+ E+ L + +L LF + GL +T +L Sbjct: 563 FAQKMAGLEAEIHELAG-ENFNVGSPAQLGEILFDKMGLEGGKKGKTGKYSTGADILEDL 621 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 +V + R S+ + L +N D T + + TGR + Sbjct: 622 ATEHELPRRVLDWRQ-LSKLKSTYTDALQTHINPDTGRVHTSYSITGANTGRLASTDPNL 680 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P + +R IA G LV D + IE Sbjct: 681 QNIPVRTEEGRR-------------------------IRGAFIAEPGNVLVSLDYSQIEL 715 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA +A +AF G D++ T + F+V ++T + R K + Sbjct: 716 RILAHIADIPALKQAFADGLDIHAMTASEMFDVPLDEMTPEIRRQAKAIN---------- 765 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ A + Sbjct: 766 ----FGVIYGIS------------------------------GFGLARNLRIPRAEAQGF 791 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + ++ + ++ ++ + + GR Sbjct: 792 IDRYFERFPGIRRYMDDTVAFAKE--------------------------HGYVQTLFGR 825 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY 622 + ++ R +Q + D++ M+ Sbjct: 826 KIHTPEINAK----GPHAGFSRRAAINAP------IQGTAADVIRRAMVRMPGAINGLPA 875 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + + +M P+ + L A+ + + Sbjct: 876 KMLLQVHDELLFEVAEGAVDETIGIARDVMEGAADPAVKLDIKLVADAGQGANW 929 >gi|319404919|emb|CBI78519.1| DNA polymerase I [Bartonella sp. AR 15-3] Length = 925 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 102/715 (14%), Positives = 210/715 (29%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49 D ET S + +I F+ H Sbjct: 337 YFSFDTETTSLDPM----------QAKLIGFSLALQPGKAAYIPLEHVAGEDDLWGDRRI 386 Query: 50 -----DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN- 103 +LK LEN + + N ++ V+K +I + + T++L+ + Sbjct: 387 VQQIETQKALALLKPILENQAILKIGQNIKYDWLVMKQY---NIVMRSFDDTMLLSYALE 443 Query: 104 --GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G + I + + + + Y Sbjct: 444 AGISTHGMDILSERW--------LGHKSITY----KDLTYNGRKVNSFAQIDLKQATLYA 491 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D +T +++ L+P ++ L + + +RG VD + L+ + Sbjct: 492 AEDADITLRLWQVLKPQLVAQRMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGEL 551 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 L++E+ L + ++L LF + GL T+ +T + L Sbjct: 552 AQAALNLEEEIYQLVG-EKFNIASPKQLGDILFGKIGLPGGSKTKNGQWSTSAQTLEELA 610 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + N + ++ + L + T L + TGR S Q Sbjct: 611 AEGHILPRKIVNWRQLTKLKSTYTDALPSYILPKTGRVHTNYSLATTSTGRLSSSEPNLQ 670 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IAS+G L+ AD + IE R Sbjct: 671 NIPVRTAEGRK-------------------------IRTAFIASKGYLLLSADYSQIELR 705 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA A +AF G+D++ T A+ F VA ++ + R K + Sbjct: 706 VLAHFADITALKEAFAQGQDIHAMTAAQMFGVAVEGMSSEIRRRAKAINF---------- 755 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ Sbjct: 756 ----GIIYGISPFGLANQ------------------------------LGISRKEASHYI 781 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + ++ + GR Sbjct: 782 QLYFERFPGIKDYMEKTKMFAR--------------------------HHGYVETIFGRR 815 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAG 621 + ++ R +Q + DI+ M+ K Sbjct: 816 IHCPEIKAVNP---QVRAFNERAAINAP------IQGSAADIIRRAMIQMENALEKEKLS 866 Query: 622 YDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P ++ A ++ +M + P+ + +PL+ + ++ + Sbjct: 867 AKMLLQVHDELIFEVPKSESTKTAILVRKVMENATMPALSLSVPLEVKVITAQNW 921 >gi|240849688|ref|YP_002971076.1| DNA polymerase I [Bartonella grahamii as4aup] gi|240266811|gb|ACS50399.1| DNA polymerase I [Bartonella grahamii as4aup] Length = 969 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 101/714 (14%), Positives = 214/714 (29%), Gaps = 175/714 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV------------ 52 + ET S + ++ F+ H Sbjct: 382 AFNTETTSLDPM----------QAKLVGFSLALQPEKAAYIPLEHFDEGEEDLLRGGHIA 431 Query: 53 -------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG- 104 +LK LE++ V + N ++ V+K DI I + T++L+ + Sbjct: 432 SQIETRKALALLKPILEDSSVLKIGQNIKYDWLVMKQY---DIIISSFDDTMLLSYAFDA 488 Query: 105 --LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 L + + E K K+L + + + Y Sbjct: 489 GILTHNMDDLSER--WLKHKPISYKDLTHN----------GKKITSFAQVDLKQATLYAA 536 Query: 163 GDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 +T +++ L+P ++ L + + +RG +D + L+ + Sbjct: 537 ERADITLRLWQVLKPQLVARGMTKIYERLDRPLVEVLARMEERGILIDRQILLRLSGELA 596 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKK 268 L++E+ + ++L LF + GL T+ +T + L Sbjct: 597 QAALILEEEIYKQ-ADEKFNLASPKQLGDILFGKMGLSGGAKTKGGQWSTSAQTLEELAA 655 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + + ++ + L + S T L + TGR S QN Sbjct: 656 EGHVLPRKIIEWRQLAKLKSTYTDALPSYIFSKTGRVHTNYSLAITSTGRLSSSEPNLQN 715 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +P + + +R+ IA +G L+ AD + IE R+ Sbjct: 716 IPVRTAEGRK-------------------------IRTAFIAPKGHVLLSADYSQIELRI 750 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A + +AF G D++ T ++ F VA + D R K + Sbjct: 751 LAHIADIKALKEAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAIN------------ 798 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 G++ A + R + Sbjct: 799 --FGIIYGIS------------------------------AFGLANQLGISRQEAGRYIQ 826 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + ++ + + + + N + GR + Sbjct: 827 LYFERFPGIKDYMEKTKIFARE--------------------------NGYVETIFGRRI 860 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGY 622 Y ++ + + R +Q + DI+ M+ K Sbjct: 861 HYPEIKAKNVKIRSL---NERAAINAP------IQGSAADIIRRAMIQMENALKEEKLSA 911 Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + + +++ ++M + P + +PL+ + ++ + Sbjct: 912 KMLLQVHDELIFEVPEEESKKTMAVVKNVMENATMPILSLSVPLEVKVMTAQNW 965 >gi|325923784|ref|ZP_08185399.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865] gi|325545717|gb|EGD16956.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865] Length = 933 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 97/705 (13%), Positives = 187/705 (26%), Gaps = 169/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 D ET S L +I + + H Sbjct: 358 AFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHNFPGAPAQLERRQAL 407 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 L L + V + + ++ V++ + + + TL+ + + + Sbjct: 408 AQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GIALAGYS-DDTLLQSFVLNSGSARHDMDS 465 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + G + + E + P + + Y D +T + Sbjct: 466 LAKRY--------LGYDTVKY----EDVCGKGAKQIPFAQISLDDATRYAAEDADITLRL 513 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + I G CVD A + + Q Sbjct: 514 HHVLGPKLAAEPGLERVYREIEMPLVEVLARIEANGVCVDAAELRRQSADLSKRMLAAQQ 573 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF E L +T + L + + Sbjct: 574 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 632 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L E ++ GR+ + GA+ TGR S QN+P + Sbjct: 633 LEYR-GLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 690 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G+KL+ D + IE R++A ++G+ Sbjct: 691 GRR-------------------------IRRAFVAPAGRKLIACDYSQIELRIMAHLSGD 725 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+G D++ T A F V+ D+R K + Sbjct: 726 PGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------GLMY 771 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + + ++ Sbjct: 772 GMS------------------------------AFGLARQLGIGRGEAQDYIALYFSRYP 801 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + Q + GR L + Sbjct: 802 GVRDFMETTRQQARD--------------------------KGYVETVFGRRLYLDFI-- 833 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 + R +Q + DI+ M++ ++L VH Sbjct: 834 -NAGSQGQRAGAERAAINAP------MQGTAADIIKRAMVSVDAWIADHAEHALMILQVH 886 Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + M++ +PL + + Sbjct: 887 DELVFEADADFVDTLLGEVTARMSAAAE--LRVPLVVDSGVGDNW 929 >gi|261379438|ref|ZP_05984011.1| DNA polymerase I [Neisseria subflava NJ9703] gi|284797890|gb|EFC53237.1| DNA polymerase I [Neisseria subflava NJ9703] Length = 938 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 113/715 (15%), Positives = 206/715 (28%), Gaps = 175/715 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 + ID ET S A + ++ + F H Sbjct: 352 DKIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP--SA 108 + LK LEN + + N +++ V DI ++ +++ + Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY---DIALNGIAGDSMLASYIIESHLGHG 458 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 L + E G E I E+ + A EY D Sbjct: 459 LDELSERW--------LGLETITY----ESLCGKGAKQISFADVAIVQATEYAAQDADFA 506 Query: 169 REIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + L E + + + G +D A + + E KL+ Sbjct: 507 LRLEAHLRAQMDDKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQA 273 QE + + ++L+ LF + G+ + L + +T + VL P Sbjct: 567 QEAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + NR ++ + L E ++ DGR+ T A TGR + QN+P Sbjct: 626 KIILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIR 683 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + VR A +G +V AD + IE R++A + Sbjct: 684 TAEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHL 718 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ + AF+ GED++ T A F AP V+ +QR K + Sbjct: 719 SGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINF--------------G 764 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ A + ++ + + Sbjct: 765 LIYGMGQYGLAKSLSIDNIS------------------------------AKNFIDRYFA 794 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ V+E + + GR L D Sbjct: 795 RYPGVAEYMQRTKEQA--------------------------AAQGFVETLFGRRLYLPD 828 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------------TK 619 + N + R +Q + D++ M++ Sbjct: 829 IHNKNA---NARAGAERAAINAP------MQGTASDLIKRAMIDVSCWLSECEASPWDDL 879 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++ VHDE+V E P+ + L +M +PL AE + Sbjct: 880 LQSKLIMQVHDELVLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 934 >gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E] gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E] Length = 965 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 102/731 (13%), Positives = 208/731 (28%), Gaps = 192/731 (26%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53 + +D ET + + ++ +F ++ H + Sbjct: 364 KLVAVDTETNALDPML----------AELVGISFALENGEACYIPLAHVHQVAAQAENAQ 413 Query: 54 ---------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 LK LEN ++ + N ++ T+ + Sbjct: 414 GDLFAESEQSSESRWEPVVGQLNKAECLSQLKPLLENPEIKKIGQNIKYDLTIFANN-GI 472 Query: 87 DIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 ++ T++ + + + E G IA E Sbjct: 473 NMQ-GVTFDTMLESYVLNSTGRHNMDDLAERY--------LGHHTIAF----EDIAGKGK 519 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQTIN 193 + + EY D VT ++ + L E L + I Sbjct: 520 NQLTFDQIELKKAAEYAAEDADVTMKLHQTLWREVAQSPELVKLYQEMELPLVSVLSRIE 579 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +D ++ + T L+ + L + ++L+ LF + GL + Sbjct: 580 RNGVLIDSRALLAQSKEFSQKLTALENKAHELAGQH-FNLASTKQLQEILFDKLGLPVLK 638 Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTL 308 T +T + VL ++ S+ + L + +N GR+ + Sbjct: 639 KTPKGAPSTNEEVLEELAYEHELP-KLLVEHRGLSKLKSTYTDKLPQMVNRKTGRVHTSY 697 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + TGR S QN+P + +R Sbjct: 698 HQAV-TATGRLSSSDPNLQNIPVRNEEGRR-------------------------IRQAF 731 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA +G K++ AD + IE R++A ++ ++ AF G+D++ +T A F +A VT +Q Sbjct: 732 IARKGFKVIAADYSQIELRIMAHLSADKGLTAAFSEGKDIHRSTAAEIFGLALENVTAEQ 791 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ + Sbjct: 792 RRSAKAINF--------------GLIYGMSSFGLSRQ----------------------- 814 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 +R + Q++ V + + + Sbjct: 815 -------LGIARGDAQRYMDLYFQRYPGVQTFMTNIREKAKS------------------ 849 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + GR L D+ + + + R +Q + D Sbjct: 850 --------QGYVETLFGRRLYLPDIQSANAMRR---KAAERVAINAP------MQGTAAD 892 Query: 609 ILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLP 662 I+ M++ KA +++ VHDE+V E + ++++ LM + +P Sbjct: 893 IIKRAMIDIDKAITDDPDILMIMQVHDELVFEVKEDKIEHYSALIKSLMENAAQ--LHVP 950 Query: 663 LKAEGYESKRY 673 L + + Sbjct: 951 LIVDVGVGDNW 961 >gi|254453556|ref|ZP_05066993.1| DNA polymerase I [Octadecabacter antarcticus 238] gi|198267962|gb|EDY92232.1| DNA polymerase I [Octadecabacter antarcticus 238] Length = 928 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 99/715 (13%), Positives = 193/715 (26%), Gaps = 176/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET S ++ ++ + H Sbjct: 342 YVAVDTETTSLNEMR----------AELVGVSLCVMAGQACYIPLTHKGGAADDLFGDDA 391 Query: 51 --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +LK LE+ + + N ++ + K + I + T++++ + Sbjct: 392 LAEGQMDFEDCLAILKPMLEDDSILKIGQNMKYDAKIFKR---VGITVDPIDDTMLMSYA 448 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 ++ + E G I + R + Sbjct: 449 MNAGLNRHSMDVLSEQY--------LGHTPIPI----KPLLGAGKSAITFDRVPVEEAVK 496 Query: 160 YCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T +++ L+P E+ L + + G VD ++ Sbjct: 497 YAAEDADITLRLWQVLKPQLHSKQVTSVYETMERPLVPVLAKMEMYGIKVDRDTLSRMSN 556 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSS 265 + L+ EL L G + ++ LF + GL T +L Sbjct: 557 AFAQKMAGLEDELYELAGGK-FNVGSPAQVGEILFDQMGLEGGKKGKTGKYATGADILED 615 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 V + R S+ + L +NS+ T + + TGR S Sbjct: 616 LATEHGFPGLVLDWRQ-LSKLKSTYTDALQTHINSETGRVHTSYSITGANTGRLSSTDPN 674 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P + + +R IA EGK LV D + IE Sbjct: 675 LQNIPIRTDEGRK-------------------------IREAFIADEGKVLVALDYSQIE 709 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A +AF G D++ T + FNV ++T D R K + Sbjct: 710 LRILAHVANIDALKQAFRDGHDIHAMTASEMFNVPLDEMTSDVRRQAKAIN--------- 760 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ A + Sbjct: 761 -----FGVIYGIS------------------------------GFGLARNLRIPRAEAQG 785 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + ++ + ++ ++ + + G Sbjct: 786 FIDRYFERFPGIRTYMDDTVAFAKE--------------------------HNRVETLFG 819 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621 R + ++ R +Q + D++ M+ A Sbjct: 820 RKIHTPEINAK----GPGAGFAKRAAINAP------IQGTAADVIRRAMIRMDAAIAHLP 869 Query: 622 YDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + +M + P +PL + + Sbjct: 870 AKMLLQVHDELVFEVDKDAAHDLIAAAREVMENAANPVVKFDVPLVVDAGIGATW 924 >gi|311693184|gb|ADP96057.1| LOW QUALITY PROTEIN: DNA polymerase I [marine bacterium HP15] Length = 868 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 103/703 (14%), Positives = 205/703 (29%), Gaps = 165/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +Y D ++ +F HD + Sbjct: 293 AFDTETTSL---------RYM-DAEIVGVSFAVKPGEAAYVPLGHDYMGAPEQLDRDQVL 342 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LEN D+ V N +++ VL + + T++ + + + Sbjct: 343 DQLKPLLENPDLAKVGQNLKYDKNVLANH-GITLEGIA-EDTMLESYVLNSVATRHDMDS 400 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L + E+ + ++ Y D +T + Sbjct: 401 LAMYY------------LGEKTTSFESIAGKGAKQLTFNQIDLEKAAPYAAEDADITLRL 448 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P + L + + RG + + +Q + +L++ Sbjct: 449 HQTLRPKLKETGKLAAVYEDIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERMAELEK 508 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA--IQVFN 278 E + + ++L+ + + GL + + ++ S + +P +V Sbjct: 509 EAHEVAG-ETFNLGSTKQLQAIFYDKMGLPVIKKPQRARRQQRSRCFRNSPTNTNCRVIL 567 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 S+ +TL E ++ T + TGR S QN+P S Sbjct: 568 EHRSLSKLKSTYTDTLPELIHHRTGRVHTSYHQAVTATGRLSSSEPNLQNIPIRSEQGRR 627 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA EG KLV AD + IE R++A ++G++ Sbjct: 628 -------------------------IRQAFIAPEGYKLVAADYSQIELRIMAHLSGDKGL 662 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 LKAFE GED++ T + F V+ V+ DQR K + G++ Sbjct: 663 LKAFEKGEDIHKATASEVFGVSLDDVSSDQRRSAKAINF--------------GLIYGMS 708 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + + + +++ V Sbjct: 709 AFGLSRQLDVE------------------------------RKLAQEYIDRYFERYPGVL 738 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + + + + GR L ++ Sbjct: 739 KYMDNIRKQAHD--------------------------DGFVETLFGRRLYLPEINARN- 771 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDE 631 + R +Q + DI+ M++ + + VHDE Sbjct: 772 --KQLQQAAERTAINAP------MQGTAADIIKRAMVDVENWLLKEHADEARMTMQVHDE 823 Query: 632 IVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ E ++ L M++ +PL E + Sbjct: 824 LILEVKESALDKIRSGLEKRMSAAAE--LDVPLLVEAGVGDNW 864 >gi|119384590|ref|YP_915646.1| DNA polymerase I [Paracoccus denitrificans PD1222] gi|119374357|gb|ABL69950.1| DNA polymerase I [Paracoccus denitrificans PD1222] Length = 940 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 93/714 (13%), Positives = 188/714 (26%), Gaps = 174/714 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51 + ID ET ++ ++ + H Sbjct: 354 VVAIDTETTGLDEM----------QAELVGVSLCTGPGRAAYLPLGHVDGAADLFGSGAR 403 Query: 52 --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 +LK LE+ V + N ++ VL I + T++L+ + Sbjct: 404 VEGQMDLDRALAMLKPVLEDPSVLKIGQNIKYDWKVLARH---GIRMVPLDDTMLLSYAQ 460 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + + + K+LI + A EY Sbjct: 461 NAGAHNHGMDELADLY--LGHRCLPIKDLI----------GSGKSQINFSQVAIDKASEY 508 Query: 161 CKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQI 210 D VT +++ L P + + + + G +D ++ Sbjct: 509 AAEDAEVTWRLWRHLRPKLAPNHVTTAYERLERPMIAVLADMEMAGIRIDSEHLKRMSNA 568 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266 + L+ E+ L G + ++L LF GL + +T VL Sbjct: 569 FAQKMAGLEAEIHELAGGP-FNVGSPKQLGEILFERMGLAGGKQGKTGAFSTGAEVLEDL 627 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + + S+ + L +N + T + ++TGR + Sbjct: 628 AAEGHELPARVLDWRAISKLKSTYTDALPLHVNPETGRVHTSYSIAGAQTGRLASTDPNL 687 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P + +R +A+ G +LV D + IE Sbjct: 688 QNIPVRTDEGRR-------------------------IREAFVAAPGMRLVSLDYSQIEL 722 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA +A +AF G D++ T ++ F V + R K + Sbjct: 723 RILAHVAQIPALQQAFRDGIDIHAMTASQMFGVPVEGMDPMIRRRAKAIN---------- 772 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ A + Sbjct: 773 ----FGVIYGIS------------------------------GFGLARNLRIPRAEAQAF 798 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + ++ + + +Q + + GR Sbjct: 799 IDTYFERFPEIRAYMDRTVAGAKQ--------------------------DGFVRTLFGR 832 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY 622 ++ + + R +Q + DI+ M+ Sbjct: 833 RIMTPGINQSGPAAGGARRA----------AINAPIQGAAADIIRRAMIRMPQAIAHLPA 882 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEGYESKRY 673 ++L VHDE+V E + + +M A +PL + + + Sbjct: 883 RMLLQVHDELVFEVEEAAVPELVEVARGVMQGAADPAVRLDVPLIVDAGQGANW 936 >gi|260060686|ref|YP_003193766.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501] gi|88784816|gb|EAR15985.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501] Length = 942 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 93/699 (13%), Positives = 205/699 (29%), Gaps = 160/699 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKE 59 + D ET S L + ++ AF ++ H + + L+ Sbjct: 371 VCFDTETTSLDPL----------EAELVGIAFSWEAHKGFYLPVPEGREAAGEVLEELRP 420 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117 E+ + V N ++ VL + + T++ + + E Sbjct: 421 FFESDTIEKVGQNLKYDIKVLSTY-GIPVR-GPLFDTMLAHYLINPDMRHNMDVLAETY- 477 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + +LI + EY D +T ++ + P Sbjct: 478 -LNYTPVPISDLIGK---------KGKNQLSMRDVPLEDQTEYAVEDADITLQLAQLFGP 527 Query: 178 LSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + Q L + + G +D L+ ++ + L ++ Sbjct: 528 ELREAQTEELFKEIEIPLLRVLADMELEGINLDTGFLEKLSGELEKDIEGLVGKIYEAAG 587 Query: 228 GLVSSSRCLEKLKTWLFLETGL-HLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L LF + L T +T + VLS K V + R Sbjct: 588 -EEFNIGSPKQLGEILFDKMKLVDKPKKTRTGQYSTAEDVLSGLAKEHEIVQMVLDYR-G 645 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ ++ L + + T + TGR S QN+P + Sbjct: 646 LTKLKSTYVDALPQQVAPSTGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGR----- 700 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R I +L+ AD + IE R++A ++ E +++ Sbjct: 701 --------------------QIRKAFIPRSPEYQLLAADYSQIELRIIAALSEEDTMIES 740 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F+ GED++ T A+ F V +VT++QR+ K + + G++ Sbjct: 741 FKRGEDIHAATAAQVFQVPLEEVTREQRSNAKTVNFGII--------------YGVSAFG 786 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 ++ T + + + + + ++ Sbjct: 787 LSNQ------------------------------TNLSRTEAKELIDTYYKTYPKLRNYI 816 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 ++ + + + GR +D+ + + + Sbjct: 817 SDQIDFARE--------------------------HGYVQTVLGRRRYLKDINGSNAVVR 850 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635 + +Q + DI+ M+ + ++L VHDE+V + Sbjct: 851 GAAERN---------AVNAPIQGSAADIIKIAMIRIYQKLREGNFKTRMLLQVHDELVFD 901 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +++ M S A +PL + + + Sbjct: 902 CYRGEADTVSALIKSEMESAYELA--VPLVVDMGFGETW 938 >gi|254228533|ref|ZP_04921958.1| DNA polymerase I [Vibrio sp. Ex25] gi|262392691|ref|YP_003284545.1| DNA polymerase I [Vibrio sp. Ex25] gi|151938915|gb|EDN57748.1| DNA polymerase I [Vibrio sp. Ex25] gi|262336285|gb|ACY50080.1| DNA polymerase I [Vibrio sp. Ex25] Length = 928 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 99/703 (14%), Positives = 196/703 (27%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F D+ HD + Sbjct: 352 AFDTETDNLDYML----------ANLVGLSFAVDEGIAAYVPVAHDYLDAPEQLDRDWVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 + LK LE+ V N ++ +VL ++++ + T++ + Sbjct: 402 EQLKPILEDAAKAKVGQNLKYDASVLARY-DIELKGIK-HDTMLESYIYNSVGGKHDMDS 459 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ Y D VT + Sbjct: 460 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHN 509 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL ++ L + I G +D + + +L+++ Sbjct: 510 RLFANIEQDESLKTVYEEIEMPLVPVLSRIERTGVFIDEMKLSAQSVEITARLDELEKKA 569 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + GL T +T + VL P + Sbjct: 570 YEI-AEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPLPKLILE 628 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + + Sbjct: 629 YR-GLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEAGRR 687 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 688 -------------------------IRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQAL 722 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A + QV+ +QR K + G++ Sbjct: 723 LDAFRDGKDIHAATAAEIMGLDIEQVSSEQRRRAKAVN--------------FGLIYGMS 768 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 769 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 798 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + I GR L ++ + Sbjct: 799 QYMEDTRSTA--ADKGYVETIF------------------------GRRLHLPEIKSRNG 832 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631 + R +Q + DI+ + M+ +++ VHDE Sbjct: 833 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 883 Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V + S + LM S +PL AE + Sbjct: 884 LVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 924 >gi|84515991|ref|ZP_01003352.1| DNA polymerase I [Loktanella vestfoldensis SKA53] gi|84510433|gb|EAQ06889.1| DNA polymerase I [Loktanella vestfoldensis SKA53] Length = 936 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 95/719 (13%), Positives = 199/719 (27%), Gaps = 180/719 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51 + +D ET S ++ ++ + H Sbjct: 346 HVAVDTETTSLDEMR----------ADLVGISLCVAAGQACYIPLAHKAGADDLFGSDAR 395 Query: 52 --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 +LK LE+ + + N ++ + L I + T++++ + Sbjct: 396 AEGQMDMAACLAMLKPVLEDASILKIGQNMKYDAKIFA---LLGIAVAPIDDTMLMSYAM 452 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + E G I + R +Y Sbjct: 453 HAGLHNHGMDTLSERY--------LGHIPIPI----KPLLGSGKSAITFDRVPVDDAVKY 500 Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D VT +++ +P + E+ L + + G VD ++ Sbjct: 501 AAEDADVTLRLWQMFKPQLHQSRVTTVYETLERPLVPVLAQMEMHGIKVDRDTLSRMSNA 560 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTE----TTCQR 261 + L+ E++ + + ++L LF E GL L + +T Sbjct: 561 FAQKMAGLEDEIQKMAGRP-FNVGSPKQLGEILFDELGLAMPDGKLPAKGKTGAYSTGAD 619 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + ++ + R ++ + L + +N D T + + TGR + Sbjct: 620 VLEDLATIHDLPRRILDWRQ-LAKLKSTYTDALQDHINPDTGRVHTSYSIAGAITGRLAS 678 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 QN+P S +R +A+ G +V D Sbjct: 679 TDPNLQNIPVRSDEGRR-------------------------IREAFVAAPGNVIVSLDY 713 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R+LA +AG +AF G D++ T + F+V Q+T D R K + Sbjct: 714 SQIELRILAHIAGIDALKQAFLDGIDIHAMTASEMFDVPLDQMTPDIRRQAKAIN----- 768 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 G++ A + Sbjct: 769 ---------FGVIYGIS------------------------------GFGLARNLRIPRS 789 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 + + ++ + + ++ + Sbjct: 790 DAQGFIDRYFERFPGIRQYMDDTVAFARD--------------------------RGYVQ 823 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620 GR + ++ R +Q + D++ M+ KA Sbjct: 824 TLFGRRINTPEINTK----GPQAGFAKRAAINAP------IQGTAADVIRRAMIRMPKAI 873 Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E T + + +M + P+ + L + + + Sbjct: 874 AGLPAKMLLQVHDELLFEVDATAADDLIGIARQVMETASDPAVKLDVKLSVDAGQGPNW 932 >gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01] gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B] gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01] gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B] Length = 928 Score = 406 bits (1042), Expect = e-110, Method: Composition-based stats. Identities = 99/703 (14%), Positives = 196/703 (27%), Gaps = 164/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F D+ HD + Sbjct: 352 AFDTETDNLDYML----------ANLVGLSFAVDEGIAAYVPVAHDYLDAPEQLDRDWVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 + LK LE+ V N ++ +VL ++++ + T++ + Sbjct: 402 EQLKPILEDAAKAKVGQNLKYDASVLARY-DIELKGIK-HDTMLESYIYNSVGGKHDMDS 459 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E ++ Y D VT + Sbjct: 460 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHN 509 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL ++ L + I G +D + + +L+++ Sbjct: 510 RLFANIEQDESLKTVYEEIEMPLVPVLSRIERTGVFIDEMKLSAQSVEITARLDELEKKA 569 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + GL T +T + VL P + Sbjct: 570 YEI-AEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPLPKLILE 628 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N T + TGR S QN+P + + Sbjct: 629 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEAGRR 687 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G+Q Sbjct: 688 -------------------------IRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQAL 722 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A V+ V+ +QR K + G++ Sbjct: 723 LDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVN--------------FGLIYGMS 768 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + +++ V Sbjct: 769 ------------------------------AFGLAKQLGIPRGEAQAYMDTYFERYPGVM 798 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + I GR L ++ + Sbjct: 799 QYMEDTRSTA--ADKGYVETIF------------------------GRRLHLPEIKSRNG 832 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631 + R +Q + DI+ + M+ +++ VHDE Sbjct: 833 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 883 Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V + S + LM S +PL AE + Sbjct: 884 LVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 924 >gi|330821221|ref|YP_004350083.1| DNA polymerase I [Burkholderia gladioli BSR3] gi|327373216|gb|AEA64571.1| DNA polymerase I [Burkholderia gladioli BSR3] Length = 919 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 106/702 (15%), Positives = 199/702 (28%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ + + H + Sbjct: 345 SFDTETTSLDPMV----------AQIVGISLSTEPGSAAYIPVAHRGPDAPEQLPRDEVL 394 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113 LK LE+ + V + ++ VL +I ++ TL+ + Sbjct: 395 AKLKPWLESAERRKVGQHLKYDAQVLANY---EIALNGIEHDTLLESYVLESHRTHDMDS 451 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ K K E + Y D +T ++ Sbjct: 452 LALRHLGVKTI----------KYEEVAGKGAQQIGFDEVPLETAAAYAAEDADITLQLHL 501 Query: 174 RLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + P E + + + + G +D A + + V +L++E Sbjct: 502 AMYPQVAREPGLKRVYAEIEMPVSLVLRRMERTGVLIDSARLDKQSHEIAVRLIELEREA 561 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + +++ F + L + T + T + VL + P + Sbjct: 562 YELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLE 620 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R S+ + L +N+ T + TGR + QN+P + Sbjct: 621 HR-GLSKLKSTYTDKLPRMINARTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR 679 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IAS G ++V AD + IE R++A ++ ++ Sbjct: 680 -------------------------IREAFIASPGCRIVSADYSQIELRIMAHISEDESL 714 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF GED++ T A F V P +V+ DQR I KV+ G++ Sbjct: 715 LRAFSQGEDIHRATAAEVFGVTPLEVSNDQRRIAKVINF--------------GLIYGMS 760 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A A + + ++ V+ Sbjct: 761 ------------------------------AFGLASNLGITRDAAKLYIDRYFARYPGVA 790 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + GR L ++ Sbjct: 791 NYMETTRAVAKD--------------------------KGYVETVFGRRLWLPEINGGNG 824 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 R +Q + D++ M+ K +++ VHDE+ Sbjct: 825 PRRQA---AERAAINAP------MQGTAADLIKLSMIAVDGWLERDKLRSRMIMQVHDEL 875 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E P+ + L +M+ +PL AE + Sbjct: 876 VLEVPEDELALVREKLPEMMSGVAK--LKVPLVAEVGAGDNW 915 >gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8] gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8] Length = 893 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 115/703 (16%), Positives = 215/703 (30%), Gaps = 165/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMPQVL 57 ID ET S D ++ + F H + + + L Sbjct: 321 AIDLETSSLDPF----------DCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKKL 370 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 KE LE+ IV N F+ VL ++ P+ + T++ A L + Sbjct: 371 KEILEDPGAKIVGQNLKFDYKVLM-VKGVE-PVPPYFDTMIAAYLLEPNEKKFNLDDLA- 427 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 LK KM +EL++ Y D +T ++K Sbjct: 428 -LKFLGYKMTSYQELMSF--------SFPLFGFSFADVPVEKAANYSCEDADITYRLYKT 478 Query: 175 LEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L E L + + G VD L++ + +L +E+ Sbjct: 479 LSLKLHEADLENVFYKIEMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYR 538 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL-EDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + +++ LF + G+ T+ +T VL + Sbjct: 539 IAG-EPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEY 597 Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R + + ++ L + +N GR+ + G + TGR S QNLP S +E Sbjct: 598 R-KIQKLKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLPTKSEEGKE 655 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397 +R ++ +V AD + IE R+LA ++G++ Sbjct: 656 -------------------------IRKAIVPQDPNWWIVSADYSQIELRILAHLSGDEN 690 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L+AFE G D++ T +R FNV P +VT++ R A + G+ Sbjct: 691 LLRAFEEGIDVHTLTASRIFNVKPEEVTEEMRR--------------AGKMVNFSIIYGV 736 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + E++ + + +V Sbjct: 737 TPYGLS------------------------------VRLGVPVKEAEKMIVNYFVLYPKV 766 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + ++ + GR + Sbjct: 767 RDYIQRVVSEAKE--------------------------KGYVRTLFGRKRDIPQLMARD 800 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631 T + R +Q + DI+ M+ K +++ VHDE Sbjct: 801 ---RNTQAEGERIAINTP------IQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDE 851 Query: 632 IVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E P+ ++ ++ MT+ +PL+ + K + Sbjct: 852 LVFEVPNEEKDALVELVKDRMTNVVK--LSVPLEVDVTIGKTW 892 >gi|295700821|ref|YP_003608714.1| DNA polymerase I [Burkholderia sp. CCGE1002] gi|295440034|gb|ADG19203.1| DNA polymerase I [Burkholderia sp. CCGE1002] Length = 913 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 110/701 (15%), Positives = 199/701 (28%), Gaps = 162/701 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ + + H + Sbjct: 339 SFDSETTSLDPMV----------AQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVL 388 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ D V + ++ VL +++ TL+ + Sbjct: 389 AKLKPWLESADHKKVGQHLKYDEQVLANY-GIEMRGVE-HDTLLESYVLESHRTHDMDSL 446 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + A EY D +T + + Sbjct: 447 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVALDKAAEYAAEDADITLRLHQA 496 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + G +D + + +L+ Sbjct: 497 LYPQIAVENSLDHVYREIEVPTSRVLRKMERTGVLIDAEKLRQQSGEIATRLIELEGSAY 556 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + T + T + VL + P + + Sbjct: 557 ELAGG-EFNLGSPKQIGQIFFEKLELPVIKKTPSGAPSTDEEVLQKLAEDYPLPKILLEH 615 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N T + TGR + QN+P + Sbjct: 616 R-GLSKLKSTYTDKLPRMVNPRTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRR- 673 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA G KLV AD + IE R++A ++G++ + Sbjct: 674 ------------------------IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLM 709 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T + FNV P +V+ DQR + KV+ G++ Sbjct: 710 RAFSQGEDIHRATASEIFNVTPLEVSSDQRRVAKVINF--------------GLIYGMS- 754 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A A + + ++ V+ Sbjct: 755 -----------------------------AFGLASNLGITRDAAKMYIDRYFARYPGVAR 785 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 +E + + + GR L ++ Sbjct: 786 YMDETRLSAK--------------------------AKGYVETVFGRRLWLPEINGGNGP 819 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 R +Q + D++ M+ K G +++ VHDE++ Sbjct: 820 RRQA---AERAAINAP------MQGTAADLIKMSMIAVQNWIEDSKIGTRMIMQVHDELI 870 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E PD + L LM A +PL AE + Sbjct: 871 LEVPDAELSEVRKRLPELMCGVA--ALKVPLVAEVGAGLNW 909 >gi|309378893|emb|CBX22480.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 939 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 105/712 (14%), Positives = 205/712 (28%), Gaps = 171/712 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52 + ID ET S A + ++ + F H Sbjct: 354 KIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQY 403 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110 + LK LEN + + N +++ V + + ++ + L Sbjct: 404 VLDRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGI-VGDAMLASYIIESHLGHGLD 461 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + G+ L E+ + A EY D Sbjct: 462 ELS------------GRWLGLETITYESLCGKGAKQIGFADVAIGPATEYAAQDADFALR 509 Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L E + + + G +D A + + E KL+QE Sbjct: 510 LEAHLRAQMDDKQLEMYEKMELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQE 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAIQ 275 + + ++L+ LF + G+ + L + +T + VL P Sbjct: 570 AYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKI 628 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + NR ++ + L E ++ + T + TGR +G QN+P + Sbjct: 629 ILKNR-SLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVAITGRLAGNNPNLQNIPIRTEE 687 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + VR A G +V AD + IE R++A ++G+ Sbjct: 688 GRK-------------------------VRRAFTAPPGSVIVSADYSQIELRIMAHLSGD 722 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF+ GED++ T A F +AP V+ +QR K + Sbjct: 723 KTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTIN--------------FGLIY 768 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + ++ + + ++ Sbjct: 769 GMGQYGLAKSLGIDNLS------------------------------AKNFIDRYFARYP 798 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V+E + + GR L D+ + Sbjct: 799 GVAEYMQRARECA--------------------------AGQGYVETLFGRRLYLPDIRH 832 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------------AGY 622 + + R +Q + D++ M++ ++ Sbjct: 833 TNA---NIRARAERAAINAP------MQGTASDLIKRAMIDVSRWLSECEASPWDDLLQS 883 Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++ VHDE+V E P+ + L +M + +PL AE + Sbjct: 884 KLIMQVHDELVLEVPEAELDLVKEKLPQMMAAVDDGMLDVPLVAEVGAGMNW 935 >gi|254292552|ref|YP_003058575.1| DNA polymerase I [Hirschia baltica ATCC 49814] gi|254041083|gb|ACT57878.1| DNA polymerase I [Hirschia baltica ATCC 49814] Length = 956 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 100/715 (13%), Positives = 194/715 (27%), Gaps = 170/715 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMPQ 55 + +D ET + ++ + + H P+ Sbjct: 364 VIGVDTETDGLDAI----------GANLVGVSLALGPNDACYIPLGHTGDGDLLGDGAPE 413 Query: 56 V---------LKEALENTDVTIVAHNSYFERTVLKA----CFNLDIPIHRWICTLVLARS 102 LK LE+ + V N ++ V + I + T++L+ + Sbjct: 414 QMDMKLALGILKPMLEDPTILKVGQNFKYDVNVFHRAGEKFLDEPIIPYPIDDTMLLSAA 473 Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 + E + + + + +Y Sbjct: 474 LE--------AGQHNHGMDVLSELH-FDHKPIPFKEVAGTGKKQITFDKVPVPEATKYAA 524 Query: 163 GDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D VT ++ L+P + E+ + + + G V+ L+ Sbjct: 525 EDADVTLRLWALLKPRLSAEGMATLYETIERPMVPVVAQMERAGIFVERETLSRLSGDFA 584 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268 + + E L + ++L LF E L T+T T L Sbjct: 585 QRMAQYEAEAYELAG-REFNMGSPKQLGEILFGEMELPGGKKTKTGAWATGADALEDLAA 643 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + ++ S+ + L E +N GR+ + +GA +TGR S Q Sbjct: 644 EGHELPKILLGWRSLSKLKSTYTDALGECINAETGRVHTSFNLVGA-QTGRLSSSDPNLQ 702 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ +A EG L+ AD + IE R Sbjct: 703 NIPIRTEEGRK-------------------------IRAAFVAQEGNVLIAADYSQIELR 737 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA + AF D++ T + F V + R K + Sbjct: 738 LLAHIGNIDTLKDAFNNDLDIHAMTASEMFGVPIEGMDPMIRRKAKAIN----------- 786 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A + Sbjct: 787 ---FGIIYGIS------------------------------AFGLARQLGIPRGEASEYI 813 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 KA+ K + + +E+ + + GR Sbjct: 814 KAYNAKFPGILKYMDEMKAFARE--------------------------KGYVETAFGRR 847 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG-- 621 + + + R+ Q + DI+ M+ K+G Sbjct: 848 IWMKGINGK----GPERGFAERQAINAPL------QGSAADIIKRAMVKMPAALEKSGLQ 897 Query: 622 YDIVLTVHDEIVCETPD-TDEFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P E ++ +M + P +PL E + + Sbjct: 898 AKMLLQVHDELIFEAPKAEAEKTIKLVKKIMETATFPVMDLSVPLLVEAEAAHSW 952 >gi|161521363|ref|YP_001584790.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|189352470|ref|YP_001948097.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|160345413|gb|ABX18498.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|189336492|dbj|BAG45561.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] Length = 917 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 110/702 (15%), Positives = 202/702 (28%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + H + Sbjct: 343 AFDTETTALDPMV----------ARLVGLSFAVEPGKAAYLPVAHRGPDMPEQLPLDDVL 392 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ D V + ++ VL +++ TL+ + Sbjct: 393 ARLKPWLESPDRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 450 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + A EY D +T ++ + Sbjct: 451 ALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITLQLHRA 500 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D A + + L+ + Sbjct: 501 LYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLIDDARLQAQSNEIATRLVDLEAQAY 560 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F + L + T + T + VL + P + + Sbjct: 561 ALAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 619 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ + L +N GR+ A TGR + QN+P + Sbjct: 620 R-GLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTAEGRR 677 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA+ G ++V AD + IE R++A ++G+ Sbjct: 678 -------------------------IREAFIAAPGHRIVSADYSQIELRIMAHISGDASL 712 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF GED++ T A F V P +V DQR I KV+ G++ Sbjct: 713 LRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVIN--------------FGLIYGMS 758 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A A + + ++ V+ Sbjct: 759 ------------------------------AFGLASNLGITRDAAKLYIDRYFARYPGVA 788 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + ++ + GR L ++ Sbjct: 789 QYMEDTRATAKE--------------------------RGYVETVFGRRLWLPEINGGNG 822 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 R +Q + D++ M+ K +++ VHDE+ Sbjct: 823 PRRQA---AERAAINAP------MQGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDEL 873 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E PD + L +M +PL AE + Sbjct: 874 VLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913 >gi|84501404|ref|ZP_00999609.1| DNA polymerase I [Oceanicola batsensis HTCC2597] gi|84390695|gb|EAQ03183.1| DNA polymerase I [Oceanicola batsensis HTCC2597] Length = 935 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 97/715 (13%), Positives = 200/715 (27%), Gaps = 176/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51 + +D ET ++ ++ + H Sbjct: 349 YVAVDTETTGLDEMR----------ADLVGICLATEPGLACYVPLGHKAAEGEGLFATED 398 Query: 52 ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 ++LK LE+ + + N ++ +LK C I + T++++ + Sbjct: 399 LAEGQMAEAEALEMLKPVLEDEAILKIGQNMKYDAKILKRC---GIDVAPCDDTMLISYA 455 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + A+ + L + + Sbjct: 456 LNAGLHQHGMDALADRY------------LSHTCIPIKELLGTGKAMITFDKVPIDKATR 503 Query: 160 YCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D VT +++ L+P + + L + + G VD ++ Sbjct: 504 YAAEDADVTLRLWQVLKPQLHAKKVTTVYETLERPLAPVLAKMEMHGIKVDRDTLSRMSS 563 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265 + L+ E+ L + ++L LF + G+ +T T VL Sbjct: 564 AFAQKMGALEAEIHELAG-ERFNVGSPKQLGEILFDKMGMEGGKKGKTGAYATGADVLED 622 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 L +V + R S+ ++L ++ + T + TGR + Sbjct: 623 LATLHELPARVLDWRQ-LSKLKSTYTDSLQTHIHPETGRVHTSYQQTGANTGRLASTDPN 681 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S +R IA EGK L+ D + IE Sbjct: 682 LQNIPVRSEEGRR-------------------------IREAFIAEEGKVLLSLDYSQIE 716 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A +AF+ G+D++ T + F V ++T + R K + Sbjct: 717 LRILAHIADIPALKQAFDEGQDIHAATASEMFGVPMEEMTPEIRRQAKAIN--------- 767 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ A + Sbjct: 768 -----FGVIYGIS------------------------------GFGLARNLRIPRAEAQG 792 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + ++ + + E + ++ N + G Sbjct: 793 FIDRYFERFPGIKDYMAETTEFGKK--------------------------NGYVQTLFG 826 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621 R + ++ R +Q + DI+ M+ A Sbjct: 827 RRIHTPEIDAK----GPRAGFARRAAINAP------IQGTAADIIRRAMIRMPDAILGLP 876 Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAK--GLPLKAEGYESKRY 673 ++L VHDE+V E + + + +M + A +PL + + + + Sbjct: 877 AKMLLQVHDELVFEVDEAAADEVAEVARGVMETAADPAVRIDVPLVVDAGQGRNW 931 >gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237] gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237] Length = 945 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 100/700 (14%), Positives = 215/700 (30%), Gaps = 162/700 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKE 59 + D ET LT ++ AF ++ D + + L+ Sbjct: 374 VCFDTETTGLNPLT----------AELVGIAFSWEASKGFYIPFPADKTEAQEIIEQLRP 423 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE-AL 116 E+ + + N ++ VL N+ + + T++ ++ + E L Sbjct: 424 FFEDEAIEKIGQNLKYDIKVLDKY-NVKVK-GKCFDTMLAHYLINPDMRHNMEVLAETYL 481 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + E LI + EY D +T ++ ++ + Sbjct: 482 NYTPVSITE---LIGK---------KGKNQLNMRDVPLPNQTEYAAEDADITYQLAQQFK 529 Query: 177 PLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P + + L ++ + G +D ++L + +D + KL+ ++ Sbjct: 530 PELEEAKTQELFTDIEIPLLHVLADMELEGINLDTKFLNSLAEDLDNDIKKLEADIYEEA 589 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L LF + L T+ +T + VLS K V + R Sbjct: 590 G-EEFNIASPKQLGDILFDKLALVKKPKKTKTGQYSTAEDVLSYLAKDHKIIENVLSYR- 647 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ ++ L + T + TGR S QN+P + Sbjct: 648 GLAKLKSTYVDALPAQVEESTGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGR---- 703 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 VR + + LV AD + IE R++A ++ E ++ Sbjct: 704 ---------------------QVRKAFVPRNKEYVLVAADYSQIELRIIAALSEETTMIE 742 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ GED++ +T ++ FNV +VT++QR+ K + + G++ Sbjct: 743 AFKNGEDIHASTASKVFNVPLEEVTREQRSNAKTVNFGII--------------YGVSAF 788 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 ++ + + + + + ++ Sbjct: 789 GLSNQTD------------------------------LSRAEAKELIDTYYKTYPKLKSY 818 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 L N + GR +D+ + + + Sbjct: 819 MGGLVDFARD--------------------------NGYVQTVLGRRRYLKDINGSNAIV 852 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 + +Q + DI+ M+N K ++L VHDE+V Sbjct: 853 RGAAERN---------AVNAPIQGSAADIIKIAMINIHKKLEEGKYKTKMLLQVHDELVF 903 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + ++ M + + +PL E + + Sbjct: 904 DVYKPELEEMKTLIKSEMENA--YKLEVPLDVEVGVGENW 941 >gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille] gi|151280566|gb|ABR88976.1| DNA polymerase I [Janthinobacterium sp. Marseille] Length = 912 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 109/697 (15%), Positives = 198/697 (28%), Gaps = 150/697 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 ID ET S I + ++ + + H ++ Sbjct: 338 SIDTETTSLIPM----------QAQLVGISLCCEPGVAAYIPVAHHYQDVPQQLSRELVL 387 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + +K LE+ V N ++ + +++ TL+ + + Sbjct: 388 EKMKPWLEDASKAKVGQNLKYDSHIFANH-GVNLRGI-VHDTLLESYVFESHRSHDMDSL 445 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ ++K + + EY D +T ++ +R Sbjct: 446 ALRHLNRKTIT----------FQEVCGKGASQIGFEQVEIGRATEYAAEDADITLQLHQR 495 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P E + Q I G +D L + + +++Q Sbjct: 496 MWPNVAEDNGLTFVYEKIELPTAVVLQKIERNGVLIDPDLLAKQSNELGKRMLEIEQNAY 555 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L + +++ F + L + T + T + VL + P + Sbjct: 556 ELAEQP-FNLNSPKQIGEIFFEKLKLPVVKKTPSGSPSTDEEVLQKLAEDYPLPKVLLEY 614 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L + ++ T + TGR + QN+P + Sbjct: 615 R-GLSKLKSTYTDKLPKMIDPTTGRVHTNYAQAVAVTGRLASNDPNLQNIPIRNAEGRR- 672 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA+ G +V AD + IE R++A ++G++ L Sbjct: 673 ------------------------IREAFIAAPGNVIVSADYSQIELRIMAHISGDENML 708 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V V +QR KV+ L Y A L + Sbjct: 709 QAFADGEDIHRATAAEIFGVERRAVDSEQRRYAKVINFGLIYGMSA-----FGLAGNLGI 763 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + G Sbjct: 764 ERSAAQSYIERYFHRFAGVKRYMDETRLEAKARGYVQTVFGR-----------------R 806 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 LW + P+G G R+ Sbjct: 807 LW-----------------------------------LPEINSPNGPRRQ----GAERAA 827 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 +N + KL VQ + K +++ VHDE+V E P+T Sbjct: 828 INAPMQG---TAADLIKLAMIAVQG---------WLETEKLQSKMIMQVHDELVLEVPET 875 Query: 640 DEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + L LM +PL AE + K Sbjct: 876 ELPLVREKLPELMRHVAQ--LKVPLIAEVGVGNNWDK 910 >gi|221197067|ref|ZP_03570114.1| DNA polymerase I [Burkholderia multivorans CGD2M] gi|221203739|ref|ZP_03576757.1| DNA polymerase I [Burkholderia multivorans CGD2] gi|221175905|gb|EEE08334.1| DNA polymerase I [Burkholderia multivorans CGD2] gi|221183621|gb|EEE16021.1| DNA polymerase I [Burkholderia multivorans CGD2M] Length = 920 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 110/702 (15%), Positives = 203/702 (28%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + H + Sbjct: 346 AFDTETTALDPMV----------ARLVGLSFAVEPGKAAYLPVAHRGPDMPEQLPLDDVL 395 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ D V + ++ VL +++ TL+ + Sbjct: 396 ARLKPWLESPDRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 453 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + A EY D +T ++ Sbjct: 454 ALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITLQLHCA 503 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D A + + + L+ + Sbjct: 504 LYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLIDDARLQAQSNEIAMRLVDLEAQAY 563 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F + L + T + T + VL + P + + Sbjct: 564 ALAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 622 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ + L +N GR+ A TGR + QN+P + Sbjct: 623 R-GLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTAEGRR 680 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA+ G ++V AD + IE R++A ++G+ Sbjct: 681 -------------------------IREAFIAAPGHRIVSADYSQIELRIMAHISGDASL 715 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF GED++ T A F V P +V DQR I KV+ G++ Sbjct: 716 LRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVIN--------------FGLIYGMS 761 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A A + + ++ V+ Sbjct: 762 ------------------------------AFGLASNLGITRDAAKLYIDRYFARYPGVA 791 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + ++ + GR L ++ Sbjct: 792 QYMEDTRASAKE--------------------------RGYVETVFGRRLWLPEINGGNG 825 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 R +Q + D++ M+ K +++ VHDE+ Sbjct: 826 PRRQA---AERAAINAP------MQGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDEL 876 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E PD + L +M +PL AE + Sbjct: 877 VLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 916 >gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5] gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5] Length = 915 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 105/704 (14%), Positives = 189/704 (26%), Gaps = 170/704 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMP-----QVL 57 ID ET ++ + H P +P + L Sbjct: 343 AIDTETTGLNP----------RHAKLVGISVATAPGRAAYVPLGHEDGPQLPRPLALERL 392 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 L + + + HN+ F+ VL+ D T++++ + G Sbjct: 393 APVLADPSILKIFHNAKFDLHVLERAGLAD--ATPVDDTMLMSYTLG--------AGRHG 442 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT--------- 168 ++ L R + Y D VT Sbjct: 443 HGMDELSALH-LDHRPISYDEVTGTGRSRVSFAAVPIDRATAYAAEDADVTLRLWLLLRP 501 Query: 169 -------REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 +++ +E + + G VD A +++ + +E Sbjct: 502 RLRTEAALALYETMERRL------LSVLLGMERAGIMVDRADLESMSAEFARRMDDIQRE 555 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 +E L + ++L LF E GL T+T T VL Sbjct: 556 IEKLAGRA-FNPGSPKQLGEILFDEMGLPGGKRTKTGAWGTDATVLEELAASGHDLPVRV 614 Query: 278 NNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + + + LV ++ +D R+ + + TGR S QN+P + Sbjct: 615 LEWRQLQKLKSTYADALVGEIDIADQRVHTSFSQAITT-TGRLSSNEPNLQNIPIRTSEG 673 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA+ GK L+ AD + IE R+LA +A Sbjct: 674 -------------------------ARIRRAFIAAPGKALISADYSQIELRLLAHVADIP 708 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++F GED++ T A F + + R K + G Sbjct: 709 ALKESFAKGEDIHARTAAEVFGLPMEGMDPMVRRRAKAINF--------------GIIYG 754 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + + +R A+ ++ Sbjct: 755 IS------------------------------AFGLARQLGIENSEAKRFIDAYFARYPE 784 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + NE + + ++ P GR + Sbjct: 785 IRRYMNETAEFART--------------------------HGYVLTPFGRRCYVPGITEK 818 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 R+ Q + DI+ M+ A ++L VHD Sbjct: 819 NPARRGY---AERQAINAPL------QGGAADIIKRAMVRLPAAIRDAGLDAVMLLQVHD 869 Query: 631 EIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E P + L +M S +PL E + Sbjct: 870 ELVFEAPKDQAEATAKLACAVMQGAAS--LSVPLLVETGIGANW 911 >gi|325141470|gb|EGC63944.1| DNA polymerase I [Neisseria meningitidis 961-5945] Length = 930 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 199/705 (28%), Gaps = 163/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK L N + + N +++ V + + ++ + L Sbjct: 402 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 460 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 507 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 508 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL P Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + NR ++ + L + ++ T + TGR + QN+P + Sbjct: 627 IILQNR-SLAKLKSTYTDKLPDMISPQDNRVHTTYAQAVAITGRLASNNPNLQNIPIRTA 685 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 VR A G +V AD + IE R++A ++G Sbjct: 686 EGRR-------------------------VRRAFTAPPGSVIVSADYSQIELRIMAHLSG 720 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ + AF+ GED++ T A F AP V+ +QR K + Sbjct: 721 DKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTIN--------------FGLI 766 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ A + ++ + + ++ Sbjct: 767 YGMGQYGLAKSLGIDNLS------------------------------AKNFIDRYFARY 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V+E + + GR L D+ Sbjct: 797 PGVAEYMQRAKEQA--------------------------AAQGYVETLFGRRLYLPDIR 830 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629 N + R +Q + D++ M++ +V+ VH Sbjct: 831 NKNA---NARAGAERAAINAP------MQGTASDLIKRAMIDVRNWLSDGIDSKLVMQVH 881 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E +T+ L +M +PL AE + + Sbjct: 882 DELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926 >gi|134093551|ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans] Length = 911 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 113/696 (16%), Positives = 201/696 (28%), Gaps = 152/696 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54 ID ET S + ++ + + H + Sbjct: 337 AIDTETTSLEPM----------QAQLVGISLCCEPGVAAYIPVAHRYQDVPLQLSRASVL 386 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + L+ LE+ V N ++ + + + TL+ + + Sbjct: 387 EKLRSWLEDDSKPKVGQNLKYDSHIFANH-GVTLRGI-VHDTLLQSYVFESHRSHDMDSL 444 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ L + + + EY D +T ++ +R Sbjct: 445 ALRH----------LNRKTMTFQDVCGKGASQLCFDQVDIARATEYAAEDADITLQLHQR 494 Query: 175 LEPL-----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P E + Q + G +D L T + + +++Q+ Sbjct: 495 MFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLIDPGLLATQSHELGKRMLEIEQQAY 554 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L + +++ F + L + T + T + VL + P + Sbjct: 555 ELAGQP-FNLGSPKQIGEIFFEKMKLPVVKKTPSGSPSTDEEVLQKLAEDYPLPKLLLEY 613 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ + L + ++ GR+ A TGR S QN+P + Sbjct: 614 R-GLSKLKSTYTDKLPKMIDPATGRVHTNYAQAVA-VTGRLSSNDPNLQNIPIRNAEGRR 671 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA G +V AD + IE R++A ++ ++ Sbjct: 672 -------------------------IREAFIAPPGSVIVSADYSQIELRIMAHISEDENM 706 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF GED++ T A F VA V+ +QR KV+ L Y A L Sbjct: 707 LRAFAEGEDIHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMSA-----FGLAGNLG 761 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + A + + + + G Sbjct: 762 IERAAAQSYIEKYFYRFSGVKRYMDDTRLEAKARGYVQTVFGR----------------- 804 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 LW + P+G G R+ Sbjct: 805 RLW-----------------------------------LPEINSPNGPRRQ----GAERA 825 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 +N + KL VQ D + A K +++ VHDE+V E P+ Sbjct: 826 AINAPMQG---TAADLIKLAMIAVQ----DW-----LEAEKLQTKMIMQVHDELVLEVPE 873 Query: 639 TDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 T+ L LM + +PL AE K + Sbjct: 874 TELALVRVKLPELMRNVAQ--LKVPLIAEVGVGKNW 907 >gi|256819929|ref|YP_003141208.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271] gi|256581512|gb|ACU92647.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271] Length = 932 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 96/700 (13%), Positives = 201/700 (28%), Gaps = 161/700 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLK 58 + D ET S L + ++ +F + H D + + + Sbjct: 361 EVCFDTETTSVNAL----------EAELVGISFCWSAHKGYYVPFPTDKAATTKLLETFR 410 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 EN + V N ++ VL+ N+++ T++ + + E Sbjct: 411 PFFENEHIGKVGQNLKYDLKVLQNY-NIEVR-GALFDTMIAHYLLNPDMRHNMDILSETY 468 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + LI + EY D VT ++ + Sbjct: 469 --LNYTPIAIESLI----------GKGKAQRSMRTVPLDQVKEYAVEDADVTWQLKNVFK 516 Query: 177 PLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 K L + + G +DV + +D + +L+ + Sbjct: 517 EEMPKVNAEKIYTDLEAPLIKVLAAMEREGVNLDVPFLKEYAKTLDADIAQLEATIAEQA 576 Query: 227 YGLVSSSRCLEKLKTWLFLETGLH-LEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L LF + + T+T T + VL+ + Sbjct: 577 G-ENFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFASKHKIVADIL-EWR 634 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + ++ L +N T + TGR S QN+P + Sbjct: 635 QVQKLKSTYVDALPLEVNKLTGRVHTTYMQTVAATGRLSSNNPNLQNIPIRTPRG----- 689 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 VR IA L+ AD + IE R++A ++ E + Sbjct: 690 --------------------QQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMID 729 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 +F ED++ +T A+ F+V +VT++QR+ K + + G++ Sbjct: 730 SFLRNEDIHRSTAAKVFHVPLEEVTREQRSHAKTVNFGII--------------YGVSAF 775 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + + + + Sbjct: 776 GLSAQ------------------------------TNLSRSESKELIDTYYATYPNLRNY 805 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 ++ Q ++ + + GR D+ + + Sbjct: 806 ISKQIQFAQE--------------------------HGYVETVLGRRRYLPDIHSRNQVV 839 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 + +Q + DI+ M+ ++L VHDE+V Sbjct: 840 RGAAERN---------AVNAPIQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDELVF 890 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + P T+ ++ M S + A +PL A+ + Sbjct: 891 DVPKTELNTVKPLIKEAMESAFTLA--VPLVADLGVGDNW 928 >gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205] gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205] Length = 921 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 105/705 (14%), Positives = 189/705 (26%), Gaps = 167/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 ID ET + ++ F+ FD + HD Sbjct: 347 DHFAIDTETTNLD----------YRVAELVGFSIAFDANEAYYVPLAHDYEGAPEQLSRE 396 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + +K LEN V + H+ ++ + + I + T++ + Sbjct: 397 QVLAQIKPILENEQVKKIGHHLKYDAHIFANH-GIIIQ-GWYFDTMLASYVLNAAATRHG 454 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V L E + K ++ + Y D VT Sbjct: 455 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIELEVAAHYAAEDAHVT 502 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217 +++ L EL + I G +D L+ Sbjct: 503 YRLYEVLSSKLKSHPELVNILHNIEMPVARVLTGMEEDGIKLDHKFLDQLSVEFSDTMQT 562 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+ + L + +++ LF + G+ T +T + +L P A Sbjct: 563 LENQATELAG-ETFNIASPKQVGEVLFDKLGIKGGKKTATGQYSTSESILEKI--EHPLA 619 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + +R ++ + LVE + T + TGR S QN+P + Sbjct: 620 EVILEHR-GLAKLKNTYTDRLVEQSHDATHRVHTSYHQALTATGRLSSTDPNLQNIPIRT 678 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R IA EG+ L+ AD + IE R++A + Sbjct: 679 PIGR-------------------------QIRKAFIAPEGRVLLAADYSQIELRLMAHFS 713 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + + AF+ G+D++ T A +A VT DQR K + Sbjct: 714 QDDALVHAFQQGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 759 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ F + Q+ Sbjct: 760 LYGMSEFGLTRQ------------------------------LGFTREESRSYIARYFQR 789 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + Q + + GR L D+ Sbjct: 790 YPGVLDYMERTRQIARE--------------------------QGFVETILGRRLYTPDI 823 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629 + R Q + DI+ M+ K ++L VH Sbjct: 824 LATNKMIKQA---AERAAINAPL------QGSAADIIKLAMIAVDKILPKDQAKLLLQVH 874 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + +M S +P E + + Sbjct: 875 DELVFEADVAIADELSKQIADVMQSVLE--ISVPFVVEVGQGLNW 917 >gi|317402839|gb|EFV83381.1| DNA polymerase I [Achromobacter xylosoxidans C54] Length = 948 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 110/703 (15%), Positives = 201/703 (28%), Gaps = 166/703 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53 + +D ET S ++ ++ + H + Sbjct: 375 VAVDTETTSLDEM----------QAKLVGLSMAVAPGVACYIPVAHRGPDGATQLPKDEV 424 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111 L+ LE+ + H++ ++ V + + T++ A L Sbjct: 425 LARLRPWLEDASRAKLLHHAKYDTHVFAN-EGIRLAGIA-EDTMLQAYVLESHRGVGLND 482 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + L E + A G Y D T ++ Sbjct: 483 LAQRY------------LGRSGVSYEDLCGKGAKQIGFDEVAVDKAGHYAAEDADFTLQL 530 Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P + + ++ + TI G VD A + + E +L+Q+ Sbjct: 531 HQVLRPQVAADAGLERIYLLEMQVSAVLTTIERNGVKVDAAELGRQSHKLGQEMLQLEQK 590 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277 L + ++L LF L + T +T + VLS + P + Sbjct: 591 AYELAGQP-FNLNSPKQLGEILFGRMQLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQVLL 649 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R S+ + L +N D T A TGR + QN+P + + Sbjct: 650 EYR-GLSKLKSTYTDKLPRMINPDTGRVHTHYSQAAVITGRLASSDPNLQNIPVRTEAGR 708 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 VR IA +G L+ AD + IE R++A ++ + Sbjct: 709 R-------------------------VREAFIAEQG-LLLSADYSQIELRIMAHVSDDAN 742 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF GED++ T + F VA A V+ +QR K + G+ Sbjct: 743 LQRAFAAGEDIHRATASEVFGVALADVSSEQRRAAKAIN--------------FGLIYGM 788 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A A + + ++ V Sbjct: 789 GVFGL------------------------------ASNLGITRDAAQAYIDRYFARYPGV 818 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + + + GR L ++ R Sbjct: 819 AMYMENTRRVARE--------------------------QGYVETVFGRRLQLPEI---R 849 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631 + R +Q + D++ M+ K +++ VHDE Sbjct: 850 GASGPRRQGAERAAINAP------MQGTAADLIKMAMVAVQDWLEAEKLQTRMIMQVHDE 903 Query: 632 IVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E PD + L LM + +PL AE K + Sbjct: 904 LVLEAPDAELELVKQTLPRLMCNVAE--LRVPLVAEVGVGKNW 944 >gi|193222215|emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans] Length = 917 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 113/696 (16%), Positives = 201/696 (28%), Gaps = 152/696 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54 ID ET S + ++ + + H + Sbjct: 343 AIDTETTSLEPM----------QAQLVGISLCCEPGVAAYIPVAHRYQDVPLQLSRASVL 392 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + L+ LE+ V N ++ + + + TL+ + + Sbjct: 393 EKLRSWLEDDSKPKVGQNLKYDSHIFANH-GVTLRGI-VHDTLLQSYVFESHRSHDMDSL 450 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ L + + + EY D +T ++ +R Sbjct: 451 ALRH----------LNRKTMTFQDVCGKGASQLCFDQVDIARATEYAAEDADITLQLHQR 500 Query: 175 LEPL-----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P E + Q + G +D L T + + +++Q+ Sbjct: 501 MFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLIDPGLLATQSHELGKRMLEIEQQAY 560 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L + +++ F + L + T + T + VL + P + Sbjct: 561 ELAGQP-FNLGSPKQIGEIFFEKMKLPVVKKTPSGSPSTDEEVLQKLAEDYPLPKLLLEY 619 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ + L + ++ GR+ A TGR S QN+P + Sbjct: 620 R-GLSKLKSTYTDKLPKMIDPATGRVHTNYAQAVA-VTGRLSSNDPNLQNIPIRNAEGRR 677 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA G +V AD + IE R++A ++ ++ Sbjct: 678 -------------------------IREAFIAPPGSVIVSADYSQIELRIMAHISEDENM 712 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF GED++ T A F VA V+ +QR KV+ L Y A L Sbjct: 713 LRAFAEGEDIHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMSA-----FGLAGNLG 767 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + A + + + + G Sbjct: 768 IERAAAQSYIEKYFYRFSGVKRYMDDTRLEAKARGYVQTVFGR----------------- 810 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 LW + P+G G R+ Sbjct: 811 RLW-----------------------------------LPEINSPNGPRRQ----GAERA 831 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 +N + KL VQ D + A K +++ VHDE+V E P+ Sbjct: 832 AINAPMQG---TAADLIKLAMIAVQ----DW-----LEAEKLQTKMIMQVHDELVLEVPE 879 Query: 639 TDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 T+ L LM + +PL AE K + Sbjct: 880 TELALVRVKLPELMRNVAQ--LKVPLIAEVGVGKNW 913 >gi|254487826|ref|ZP_05101031.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101] gi|214044695|gb|EEB85333.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101] Length = 931 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 95/715 (13%), Positives = 191/715 (26%), Gaps = 176/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET ++ ++ + +H Sbjct: 345 YVAVDTETTGLDEMV----------AELVGISLCVQPGKACYIPLIHKTHTGDDLFGSED 394 Query: 51 --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 ++L LE+ + + N ++ + L I + T++L+ Sbjct: 395 LAEGQIPTEEALRMLTPMLEDPSIMKIGQNMKYDSKIFAQ---LGITVAPIDDTMLLSYV 451 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + A+ E G I + + Sbjct: 452 MHAGLHGHGMDALSERY--------LGHTPIPI----KPLLGSGKSAVTFDKVPLAQAVP 499 Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T +++ +P + E+ L + + G VD ++ Sbjct: 500 YAAEDADITLRLWQLFKPQLHRIQVTKVYETLERPLVPVLAAMERSGIKVDRDTLSRMSN 559 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265 + L+ E+ L + ++L LF E GL +T T VL Sbjct: 560 AFAQKMAGLEDEIYELAGRK-FNVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADVLED 618 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 ++ + R S+ + L + +N D T + + TGR + Sbjct: 619 LATEHDLPGRILDWRQ-LSKLKSTYTDALQDHINKDTGRVHTSYSIAGASTGRLASTDPN 677 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S +R +A EGK LV D + IE Sbjct: 678 LQNIPIRSEEGRR-------------------------IREAFVAEEGKVLVALDYSQIE 712 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A +AF+ G D++ T + F V ++T D R K + Sbjct: 713 LRILAHIADIPELKQAFKDGIDIHALTASEMFGVPLDEMTPDIRRQAKAIN--------- 763 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ A + Sbjct: 764 -----FGVIYGIS------------------------------GFGLARNLRIPRAEAQG 788 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + ++ + + ++ + + G Sbjct: 789 FIDRYFERFPGIRTYMDNTKAFAKE--------------------------HGFVQTLFG 822 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621 R + ++G R +Q + D++ M+ Sbjct: 823 RKINTPEIGAK----GPRAGFAQRAAINAP------IQGTAADVIRRAMIRMPAAIKDIP 872 Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E E +M + P + L + + + Sbjct: 873 ATMLLQVHDELLFEVEKGAEDALIKAARDVMENASEPVVKLDVKLIVDAGKGANW 927 >gi|154250561|ref|YP_001411385.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1] gi|154154511|gb|ABS61728.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1] Length = 979 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 102/709 (14%), Positives = 204/709 (28%), Gaps = 164/709 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 L +D ET S + ++ + H Sbjct: 392 LAVDTETDSLFPM----------QARLVGVSLSLLPGEACYIPLQHGAGGGLDFADAGGQ 441 Query: 51 -----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 LK LE+ + + N F+ TVL+ I + T++++ + Sbjct: 442 PQIPLKEAIARLKPLLEDPSILKIGQNLKFDMTVLRQH---GIQLKGLDDTMLMSYALDA 498 Query: 106 P---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 + + E + G + I+ + Y Sbjct: 499 GVHGHGMDELSE--------LHLGHKPISF----AEVAGKGKAQITFDQVPVDRATAYAA 546 Query: 163 GDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D VT ++ L+P + E+ L + + G VD A+ L+ Sbjct: 547 EDADVTLRLWHILKPRLVAERRVTVYETLERPLVSVLAEMERAGVKVDKAVLARLSGDFS 606 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKK 268 + + + E+ L + ++L LF + L T+ +T L + Sbjct: 607 QKMAQYEDEIYELAG-ERFNIGSPKQLGEILFDKQSLEGGRKTKTGAWSTDADTLEALAA 665 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + Q + S+ + L E +N + T L ++ TGR + QN Sbjct: 666 KGHELPQRVLDWRGLSKLKSTYTDALPEYINPETGRIHTCYSLASTSTGRLASTEPNLQN 725 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +P + + +R+ +A +G L+ AD + IE R+ Sbjct: 726 IPVRTEDGRK-------------------------IRTAFVAEKGNLLISADYSQIELRL 760 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A + KAF G D++ T + F V + R K + + Y A Sbjct: 761 LAHIADIEALKKAFAEGLDIHAMTASEMFGVPIEGMESSVRRRAKAINFGIIYGISA--- 817 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 L + + + + + ++ ++ + G Sbjct: 818 --FGLANQLGIPRQEAGEYIDRYFKRFPGIRAYMDDTRDFAHKNGYVETIFGRRIH--LP 873 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 A K+ +A G A +R ++ +P Sbjct: 874 AINSKNPAEKSFM---ERAAINAPIQGSAADIIRR--------------AMIRMP----- 911 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS-RDILAEGMMNATKAGYDIVLT 627 QA++ + A ++ Sbjct: 912 ----------------------------------QALADAKLAARMLLQVH--------- 928 Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTS--NPSWAKGLPLKAEGYESKRY 673 DE++ E P+ + S + +M+ P+ A +PL + +K + Sbjct: 929 --DELIFEVPEKEAEKTSKVVSRIMSDAAAPAVALTVPLDVDARAAKNW 975 >gi|32477714|ref|NP_870708.1| DNA polymerase I [Rhodopirellula baltica SH 1] gi|32448268|emb|CAD77785.1| DNA polymerase I [Rhodopirellula baltica SH 1] Length = 1027 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 110/704 (15%), Positives = 205/704 (29%), Gaps = 160/704 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--------VMP 54 L ID ET S +A ++ + + ++ Sbjct: 448 VLAIDTETTST----------HARGCDLVGISIAWQPGEAAYIPVRAPDGDPAINELIVI 497 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 ++L++ LE++ + V HN F+ VL + + T+V L Sbjct: 498 EILRDVLESSAIEKVGHNLKFDVIVL-RSAGVQLGGITM-DTMVADYLLNSGGRNHGLDD 555 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + K+LI + + Y DV V + Sbjct: 556 LAQR--RLDHTNLSIKDLI----------GTGKKQITMDQVPVDDVSPYACEDVDVPIRL 603 Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 L E L + + G V+ +++ D + L Sbjct: 604 APTLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSERFDKDIADLRAL 663 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278 + S + ++L LF E GL + T+ +T VLS A V Sbjct: 664 VFSAAGH-EFNLDSPKQLGVVLFEELGLPVIKKTKTGVSTDADVLSQLAVNHEIAEHVLQ 722 Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R A++ ++ L + + GR+ + + A+ TGR S QN+P + + Sbjct: 723 YRQ-ATKLKNTYIDALPQLICDKTGRVHTSFRQDVAA-TGRLSSSEPNLQNIPIRTEQGK 780 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQ 396 +R+ A EG L+ AD + IE RVLA +G++ Sbjct: 781 A-------------------------IRAAFTAGREGWSLLGADYSQIELRVLAHYSGDE 815 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + A+ D++ A + ++VT D R I K + + Y Sbjct: 816 ALIGAYHDDADIHTRVAAEVNGIEESEVTSDLRRIAKTINFGIVYGQSP-----FGLAKT 870 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L ++ + + E F +G R++ Sbjct: 871 LGISNDEARDYIELYFQRYSGVEAFMMDTLARCRNEGYVATMLGR---------RREIKG 921 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V +L LP + + Sbjct: 922 VRDL---------------------------------------AKLPESKRRSLTEP--- 939 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630 R +Q + D++ M+ + ++L +HD Sbjct: 940 -----------ERIAINMP------IQGTAADLIKLAMLRVHEQLKQSDLQARLLLQIHD 982 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E++ E+PD + + MTS +PLK + + + Sbjct: 983 ELLLESPDEELDALSDTIREAMTSVME--LDVPLKVDVAHGRTW 1024 >gi|38146987|gb|AAR11878.1| DNA polymerase I [Tepidomonas sp. HM1] Length = 927 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 101/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VM 53 + +D ET S ++ ++ +F H+ + Sbjct: 353 VALDTETTSLDEMA----------ARLVGISFSVAPGEAAYLPLAHEDPGTAGQLPLDEV 402 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKA 111 L+ LE+ + +++ VL + + + T++ + + P L++ Sbjct: 403 LARLRPWLEDPAAAKCGQHIKYDQHVLANH-GILVQGY-VHDTMLQSYVLEVHRPHNLES 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E P R Y D + Sbjct: 461 LAERH------------LGRSAMRYEDLCGKGAAQIPFARVPIERAAPYACEDAEQCLAV 508 Query: 172 FKRLEPLSSKE---QELWY-------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P + Q ++ + + G +D A +Q + L+ E Sbjct: 509 HQVLWPQLQAQPALQRIYELEVAVSGVLWRMERHGVLIDAAELQRQSQALGERIRALEAE 568 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277 +L + +++ + L + T +T + VL + P +V Sbjct: 569 AHALAGMP-FNLGSPKQIAEVFYDRLKLPVLKKTATGAPSTDEEVLEKLAEDYPLPARVL 627 Query: 278 NNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R + + L +N GR+ A TGR + QN+P + Sbjct: 628 EHR-SLVKLKSTYTDKLPTMINPATGRVHTHFAQAVA-VTGRLASAEPNLQNIPIRTPEG 685 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R+ IA G + AD + IE R++A ++ + Sbjct: 686 RR-------------------------IRAAFIAPPGHVIASADYSQIELRIMAHLSQDP 720 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AFE G D++ T A F V+P VT +QR K + G Sbjct: 721 ALLRAFEQGLDVHRATAAEVFGVSPEHVTPEQRRYAKTINF--------------GLIYG 766 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + +++ + + + ++ + Sbjct: 767 MSPYGLAKALGIDASA------------------------------AKSYIERYFERFAG 796 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + + GR LV ++ + Sbjct: 797 VRAYMEQTRAQAR--------------------------ARGYVETVFGRRLVLPEIQSP 830 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + +Q + D++ M+ +A +VL VHD Sbjct: 831 NGPRRAAAERA---------AINAPMQGTAADLIKMSMVAVQRALDEQQRRTRMVLQVHD 881 Query: 631 EIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E P+ + + LM + + +PL A + Sbjct: 882 ELVFEVPNEEVDWVRTEVPRLMAAVAT--LRVPLVASVGVGANW 923 >gi|86131451|ref|ZP_01050049.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134] gi|85817896|gb|EAQ39064.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134] Length = 949 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 107/700 (15%), Positives = 217/700 (31%), Gaps = 163/700 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59 + D ET L ++ AF ++ + + L+ Sbjct: 379 VCFDTETTGLDPLV----------AELVGVAFSWEAGKGYYIPFPESKDEAQALIEELRP 428 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE-AL 116 E+T + + N ++ VL ++ + + T++ + + E L Sbjct: 429 FFEHTGIEKIGQNLKYDIKVLAKY-DVKVK-GKLFDTMLAHYLINPDMRHNMDVLAETYL 486 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + E LI + K EY D +T ++ + E Sbjct: 487 NYTPVSITE---LIGK---------KGKNQKSMRDVPLDQQTEYAVEDADITLQLKQHFE 534 Query: 177 PLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + + G +DV +L+ ++ + +L E+ Sbjct: 535 KELDEAGTRKLFNDIEIPLLRVLAAMEVEGINLDVNFLESLSGDLNADIERLTSEIYEEA 594 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRM 281 ++L LF + L T+ +T + VLS K +V + R Sbjct: 595 G-EEFKISSPKQLGEILFDKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHDIIQKVLDYR- 652 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ ++ L E + DGR+ A+ TGR S QN+P + Sbjct: 653 GLSKLKSTYVDALPEQVAQDGRVHTDYMQTVAA-TGRLSSNNPNLQNIPIRTERGR---- 707 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 VR + E L+ AD + IE R++A ++ E+ ++ Sbjct: 708 ---------------------QVRKAFVPRDENHTLLAADYSQIELRIIAALSEEENMIQ 746 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF GED++ +T A+ FNV +VT++QR+ K + + G++ Sbjct: 747 AFTDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGII--------------YGVSAF 792 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 ++ + + + + + ++ Sbjct: 793 GLSNQTD------------------------------LSRGEAKELIDNYYKSYPKLRNY 822 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 +EL + N + R + ++ + Sbjct: 823 MSELVDFARE--------------------------NGYVKTVLDRRRYLNGINSSNGVV 856 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 + +Q + DI+ M+N + ++L VHDE+V Sbjct: 857 RGAAERN---------AVNAPIQGSAADIIKIAMINIFEKLENSDYKTKMLLQVHDELVF 907 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + P+ + + ++ M S A +PL E + + Sbjct: 908 DVPNIELDDIKNLIKTEMESAFKMA--VPLDVEVGVGQNW 945 >gi|262405632|ref|ZP_06082182.1| DNA polymerase I [Bacteroides sp. 2_1_22] gi|294644423|ref|ZP_06722186.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a] gi|262356507|gb|EEZ05597.1| DNA polymerase I [Bacteroides sp. 2_1_22] gi|292640258|gb|EFF58513.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a] Length = 949 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 94/700 (13%), Positives = 198/700 (28%), Gaps = 159/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 L +D ET + D ++ +F ++ D + + Sbjct: 377 KILSLDTETTETEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 + EN + V N ++ VL+ + T++ + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNYGAVV--KGPLFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + ELI K + Y D +T ++ L Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDVYLYACEDADITLKLKNVL 533 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E E L + I G +D + + ++++E+ L Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKEIYEL 593 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL S + P ++ +R Sbjct: 594 AG-ETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 652 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L +N GR+ + + TGR S QN+P + +E Sbjct: 653 -GLKKLLGTYIDALPLLINPRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE- 709 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I EG AD + IE R++A ++ ++ + Sbjct: 710 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF + D++ T A+ + + V D R K G+++ Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANF--------------GIIYGISV 791 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + + + V Sbjct: 792 FGLAERMNVD------------------------------RKEAKELIDGYFETYPGVKA 821 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ Q ++ + R D+ + + Sbjct: 822 YMDKSIQVAQE--------------------------KGYVETIFHRKRFLPDINSRNAV 855 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + R +Q + DI+ M + ++L VHDE+ Sbjct: 856 VRGY---AERNAINAP------IQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELN 906 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P ++ + ++ +PLKA+ K + Sbjct: 907 FSVPVNEKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 945 >gi|238022872|ref|ZP_04603298.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147] gi|237865680|gb|EEP66818.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147] Length = 930 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 206/703 (29%), Gaps = 162/703 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMP 54 + +D ET S + + ++ + F H + Sbjct: 354 QIGLDTETTSLDPM----------NARLVGISMAFAAGEAVYIPINHTFAEQQLSWETLL 403 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112 LK LE+ + + N +++ V + + ++ + L + Sbjct: 404 GSLKPYLESKTLLKIGQNLKYDQHVFANH-GIQLQGIA-GDAMLASYVLESHLGHGLDEL 461 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + G E I E+ + + EY D I Sbjct: 462 AQRW--------LGLETITY----ESLCGKGAKQISFADVSVEQATEYACQDADFALRIE 509 Query: 173 KRLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+ E + + + G +D A + + E KL+Q+ Sbjct: 510 AHLKAQMSDEQRKMYEEMELPVAQVLFHMERNGVLIDRAELAQQSAELGAELLKLEQQAY 569 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAIQVF 277 L + ++L+ LF + G+ + L + +T + VL P + Sbjct: 570 DLAGQP-FNLNSPKQLQEILFTKLGIPTKGLKKTSTGSISTNEAVLEQLAMDYPLPKIIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 NR ++ + L E +N + T + TGR + QN+P + Sbjct: 629 QNR-SLAKLKSTYTDKLPEMINPNTHRIHTNYAQAVAITGRLASNNPNLQNIPIRTSEGR 687 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 VR IA E +V AD + IE R++A ++G+ Sbjct: 688 R-------------------------VRRAFIAPENSVIVSADYSQIELRIMAHLSGDAT 722 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF+ GED++ T A F + P +T +QR K + G+ Sbjct: 723 LIEAFKNGEDVHRRTAAEVFGMQPENITPEQRRYAKTIN--------------FGLIYGM 768 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A + ++A + K + +++ V Sbjct: 769 SSYGLAKSLGIDNAS------------------------------ADMFIKRYFARYTGV 798 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 ++ + + + GR L D+ Sbjct: 799 ADYMQRTKEQA--------------------------ADLGYVETLFGRRLYLPDIHAKN 832 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDE 631 + R +Q + D++ M+ + + VHDE Sbjct: 833 A---QARAGAERAAINAP------MQGTASDLIKRAMIAVDDFLLSGSLKTRLTMQVHDE 883 Query: 632 IVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E P +++ + LM S +PL AE K + Sbjct: 884 LVLEVPKSEQERIVQNIPALMASVGKGVLDVPLVAEVGIGKNW 926 >gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301] gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301] Length = 892 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 105/704 (14%), Positives = 189/704 (26%), Gaps = 170/704 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMP-----QVL 57 ID ET ++ + H P +P + L Sbjct: 320 AIDTETTGLNP----------RHAKLVGISVATAPGRAAYIPLGHEDGPQLPRPLALERL 369 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 L + + + HN+ F+ VL+ D T++++ + G Sbjct: 370 APVLADPSILKIFHNAKFDLHVLERAGLAD--ATPVDDTMLMSYTLG--------AGRHG 419 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT--------- 168 ++ L R + Y D VT Sbjct: 420 HGMDELSALH-LDHRPISYDEVTGTGRSRVSFAAVPIDRATAYAAEDADVTLRLWLLLRP 478 Query: 169 -------REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 +++ +E + + G VD A +++ + +E Sbjct: 479 RLRTEAALALYETMERRL------LSVLLGMERAGIMVDRADLESMSAEFARRMDDIQRE 532 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 +E L + ++L LF E GL T+T T VL Sbjct: 533 IEKLAGRA-FNPGSPKQLGEILFDEMGLPGGKRTKTGAWGTDATVLEELAASGHDLPVRV 591 Query: 278 NNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + + + LV ++ +D R+ + + TGR S QN+P + Sbjct: 592 LEWRQLQKLKSTYADALVGEIDIADQRVHTSFSQAITT-TGRLSSNEPNLQNIPIRTSEG 650 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA+ GK L+ AD + IE R+LA +A Sbjct: 651 -------------------------ARIRRAFIAAPGKALISADYSQIELRLLAHVADIP 685 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++F GED++ T A F + + R K + G Sbjct: 686 ALKESFAKGEDIHARTAAEVFGLPMEGMDPMVRRRAKAINF--------------GIIYG 731 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + + +R A+ ++ Sbjct: 732 IS------------------------------AFGLARQLGIENSEAKRFIDAYFARYPE 761 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + NE + + ++ P GR + Sbjct: 762 IRRYMNETAEFART--------------------------HGYVLTPFGRRCYVPGITEK 795 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 R+ Q + DI+ M+ A ++L VHD Sbjct: 796 NPARRGY---AERQAINAPL------QGGAADIIKRAMVRLPAAIRDAGLDAVMLLQVHD 846 Query: 631 EIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E P + L +M S +PL E + Sbjct: 847 ELVFEAPKDQAEATAKLACAVMQGAAS--LSVPLLVETGIGANW 888 >gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] Length = 930 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 104/703 (14%), Positives = 203/703 (28%), Gaps = 162/703 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + D ET S + D ++ +F ++ HD + Sbjct: 353 IAFDTETTSLNYM----------DAELVGVSFCIEEGEAAYVPVAHDYPDAPTQLSREFV 402 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110 LK LE++++ V + +++ VL ++ + T++ + + Sbjct: 403 LDALKPILESSNIIKVGQHIKYDKNVLANY-DITLNGIG-FDTMLESYVLNSTAQRHDMD 460 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 ++ A G + I E + ++ A G Y D +T Sbjct: 461 SLALAY--------LGHKTIHF----EDIAGKGAKQLTFNQIALEEAGPYAAEDADITLR 508 Query: 171 IFKRLEPLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + + EL + + G +D +Q + +L+ Sbjct: 509 LHNTIWAKLKEIPELKNLLIDVEVPLACVLSRMEQEGVLIDSQRLSQQSQDLAARIAELE 568 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 +E+ + ++L+ LF + L + T +T + VL P + Sbjct: 569 KEVHEEAG-EPFNLGSTKQLQHILFEKMSLPIIKKTPKGAPSTSEDVLQELALEYPLPKK 627 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R ++ + L + +N T + TGR S QN+P + Sbjct: 628 IMEYR-GLTKLKNTYTDKLPKMINHRTGRVHTSYHQAITATGRLSSTDPNLQNIPIRNEE 686 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 VR + +G K V AD + IE R++A ++G+ Sbjct: 687 GRR-------------------------VRQAFVPRKGNKFVAADYSQIELRIMAHLSGD 721 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF G+D++ T + F V +VT +QR K + L Y A Sbjct: 722 KGLLDAFAHGKDIHKATASEVFGVPLDEVTTEQRRSAKAINFGLIYGMSA-----FGLAK 776 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 LN+ + E + + +E+ E + G R Sbjct: 777 QLNIPRNEAQKYMDLYFERYPGVLEYMDSTRESAKEKGYVETVFGR---------RLYLP 827 Query: 516 RVS----ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + +A G A K + + Sbjct: 828 DIKASNGARRKGAERAAINAPMQGTAADIIKMAMIKVDDWISKN---------------- 871 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 + D +++ VHDE Sbjct: 872 ----------------------------------AAD------------DVTMMMQVHDE 885 Query: 632 IVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E + + + LM S + +PL E + + Sbjct: 886 LVFEIKEDKVDSYVKTINTLMESAAT--LNVPLVVEAGVGENW 926 >gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860] Length = 927 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 113/700 (16%), Positives = 214/700 (30%), Gaps = 155/700 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + +D ET S +L ++ +F + H + Sbjct: 353 VALDTETTSLDELR----------AEIVGLSFSVEPGAAAYIPLAHSGPDAPEQLPLDAV 402 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKA 111 + LK LE+ + + ++R V ++ + + T++ + + P L + Sbjct: 403 LERLKPWLEDGSRAKLGQHVKYDRHVFANH-DIGVRGY-VHDTMLQSYVLEVHKPHNLAS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E G+ I+ E + P + Y D T ++ Sbjct: 461 LAERH--------TGRTGISY----EDLCGKGAKQIPFAQVPVEQAAAYSCEDSDQTLDV 508 Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L PL + E + I G +D A + + KL+QE Sbjct: 509 HRVLWPLIEADEKLRAIYALEMESSEVLFRIERNGVLIDPATLQQQSHDLGQRILKLEQE 568 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + + ++L F + GL + T +T + VL + P ++ Sbjct: 569 AYDIAGQP-FNLGSPKQLGEIFFDKLGLPVVKKTATGARSTDEEVLEKLAEDYPLPAKIL 627 Query: 278 NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R S+ + L + + GR+ A TGR S QN+P + Sbjct: 628 EHR-SLSKLKGTYTDKLSQLADPRTGRVHTHYAQAVA-VTGRLSSNEPNLQNIPIRTSEG 685 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 VR +A G+ + AD + IE R++A ++G+ Sbjct: 686 RR-------------------------VREAFVAPPGRVIASADYSQIELRIMAHLSGDD 720 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF G D++ T A F VA QV+ +QR KV+ L Y Sbjct: 721 ALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMS-----SFGLARN 775 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L ++ A + + + + + + + + G R Sbjct: 776 LGIDNKAAAAYIDRYFQRYPGVKQYMDETKASAKARGYVETVFGR---------RLYLPE 826 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 ++ P+G + Sbjct: 827 INS-------------------------------------------PNGPRRGAAERAAI 843 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 + + T L ++ VQ +++A K +++ VHDE+V E Sbjct: 844 NAPMQGTAADLIKKAMVA-------VQ---------AVLDADKPQVLMIMQVHDELVFEL 887 Query: 637 PDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P+ + + LM +PL AE + K Sbjct: 888 PEEEAGWLRTEIPRLMAGVAE--LKVPLLAEVGTGPNWEK 925 >gi|93005249|ref|YP_579686.1| DNA polymerase I [Psychrobacter cryohalolentis K5] gi|92392927|gb|ABE74202.1| DNA polymerase I [Psychrobacter cryohalolentis K5] Length = 988 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 100/719 (13%), Positives = 198/719 (27%), Gaps = 181/719 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------------DPV 52 ID ET S Y ++ +F H H Sbjct: 396 IDTETTS----------VYWRQAELVGLSFAVQAHEAYYIPLTHALEGDELIAKQLDRDT 445 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKAC-----FNLDIPIHRWI-CTLVLARSNGL- 105 + LK LEN ++ + + ++ +L N+ + W T++ + Sbjct: 446 VLARLKPILENPNIGKIGQHLKYDAHILSLYDINLLGNIHDKPNNWAMDTMLASYVINAA 505 Query: 106 --PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 + + L + E + + A + +Y Sbjct: 506 ITRHGMDDLARHY------------LQTQTISFEDVAGKGAKQVSFDQVAIDIASDYACE 553 Query: 164 DVTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D +T ++F E + + G + + L++ D Sbjct: 554 DADITYQLFDLFSKKLADDTNNAKLLHELEIPTAEILCQMEANGILIRRPFLNELSKRFD 613 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKK 268 E L++ + + ++L LF + G+ T+ +T + VLS Sbjct: 614 EEIIALEKRAYEVAG-EEFNLGSPKQLGEMLFDKLGVVGGKKTKTGQYSTGEAVLSKI-- 670 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 P R S+ + L ++ T + TGR S QN Sbjct: 671 DHPLVDITLEYR-GLSKLKSTYTDALDNVADAKTDRVHTSYHQALTSTGRLSSTDPNLQN 729 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +P + + +R IA EG+ ++ AD + IE R+ Sbjct: 730 IPIRTATGR-------------------------LIRQAFIAPEGRVILAADYSQIELRL 764 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A +G++ AF G D++ T A A+VT +R K + Sbjct: 765 MAHFSGDKNLTHAFNEGLDIHAATAAEVLGKEVAEVTATERRNAKAINF----------- 813 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 G++ A ++ + + Sbjct: 814 ---GLLYGMSAFGLAKQLQM------------------------------SRSEAQDYID 840 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +++ V + + + + + GR L Sbjct: 841 MYFERYPGVKDYMINTRASAYE--------------------------HGYIETILGRKL 874 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDI 624 D+ ++ + R Q + D++ M+ K + Sbjct: 875 YTPDINHSNRMVKQ---GAERAAINAPL------QGSAADLIKLAMIAVDKVLPKEQAKM 925 Query: 625 VLTVHDEIVCETPDTDEFNASM-LYHLM-----TSNPS--WAKG--LPLKAEGYESKRY 673 +L VHDE+V E S + + M + W +PL E + + Sbjct: 926 LLQVHDELVFEVDADKVDEISQLITNAMQDVLTATAVEKGWNVNFAVPLLVETDSGQNW 984 >gi|167583897|ref|ZP_02376285.1| DNA polymerase I [Burkholderia ubonensis Bu] Length = 917 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 110/701 (15%), Positives = 201/701 (28%), Gaps = 162/701 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +T ++ +F + H + Sbjct: 343 AFDTETTSLDPMT----------ARLVGLSFSVEPGKAAYLPVAHRGPDLPEQLPLDEVL 392 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ D V + ++ VL +++ TL+ + Sbjct: 393 ARLKPWLESADRKKVGQHLKYDAQVLANY-GIELSGIE-HDTLLESYVLESHRTHDMDSL 450 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + A EY D +T ++ Sbjct: 451 ALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITLQLHHA 500 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D A + + +L+ + Sbjct: 501 LYPQVAREPGLERVYREIEMPVSIVLRKMERTGVLIDDARLQAQSTEIATRLVELEAQAY 560 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + T + T + VL + P + + Sbjct: 561 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 619 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N + T + TGR + QN+P + Sbjct: 620 R-GLSKLKSTYTDKLPRMVNPETGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 677 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IAS G ++V AD + IE R++A ++G+ L Sbjct: 678 ------------------------IREAFIASPGHQIVSADYSQIELRIMAHISGDASLL 713 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ G++ Sbjct: 714 RAFSNGEDIHRATAAEVFGVTPLEVTADQRRIAKVINF--------------GLIYGMS- 758 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A A + + ++ V++ Sbjct: 759 -----------------------------AFGLASNLGITRDAAKLYIDRYFARYPGVAQ 789 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + ++ + GR L ++ Sbjct: 790 YMEDTRAIAKE--------------------------KGYVETVFGRRLWLPEINGGNGP 823 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633 R +Q + D++ M+ +++ VHDE+V Sbjct: 824 RRQA---AERAAINAP------MQGTAADLIKLSMIAVDDWLTRDGLASRMIMQVHDELV 874 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P+ + L +M +PL AE + Sbjct: 875 LEVPEAELPRVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913 >gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135] gi|198273174|gb|EDY97443.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135] Length = 931 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 92/701 (13%), Positives = 208/701 (29%), Gaps = 161/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 +D ET +T ++ +F F ++ + + + Sbjct: 359 KFFSLDTETTGIDPIT----------AELVGMSFSFAENQAFYVPVPANREEALTIVNIF 408 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K A EN D + N ++ +L + + + T++ + + E Sbjct: 409 KPAFENPDSLKIGQNIKYDLIMLANY-GVTLK-GKMFDTMIAHYVLQPELRHGMDYLAEI 466 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + +ELI + A +Y D VT ++ + L Sbjct: 467 Y--LKYETIKIEELIG---------AKGKKQGNMRDLAPEAVYKYACEDADVTLKLKQVL 515 Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E L + + G +D ++ ++++E+ L Sbjct: 516 ENELETNGVKKLFEEIEMPLVPVLAYMERNGVRIDTEALKETSRHFTARMNQIEEEVHQL 575 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + T+T T + VL S + ++ +R Sbjct: 576 AGM-EFNIASPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR 634 Query: 281 MRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L + +N GR+ + + TGR S QN+P + +E Sbjct: 635 -GLKKLLGTYIDALPQLINPATGRIHTSFNQ-TVTATGRLSSSNPNLQNIPIRNEDGKE- 691 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I EG + AD + IE R++A ++ + + Sbjct: 692 ------------------------IRKAFIPDEGCEFFSADYSQIELRIMAHLSNDPHMI 727 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ +D++ T A+ + V +VT++QR+ K + G+++ Sbjct: 728 EAFQKDQDIHAATAAKIYKVKLEEVTREQRSKAKTANFGII--------------YGISV 773 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + + + V Sbjct: 774 FGLAERLNVD------------------------------RKEAKALIDGYFENYPNVKA 803 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ Q + + R D+ + + Sbjct: 804 YMDQSIQEARE--------------------------KGYIETIFKRKRYLPDINSKNAV 837 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + R +Q + DI+ M+ + ++L VHDE+ Sbjct: 838 VRGY---AERNAINAP------IQGSAADIIKVAMIRIYQRFQEEGIRSKMILQVHDELN 888 Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + M + + PL+A+ + Sbjct: 889 FSVLPEEKEKVQQIVISEMEAA--YKMKAPLRADHGWGHNW 927 >gi|85375693|ref|YP_459755.1| DNA polymerase I [Erythrobacter litoralis HTCC2594] gi|84788776|gb|ABC64958.1| DNA polymerase I [Erythrobacter litoralis HTCC2594] Length = 948 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 112/715 (15%), Positives = 200/715 (27%), Gaps = 169/715 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------ 49 + +D ET + + ++ + + H Sbjct: 356 RIIAVDTETSALDAMR----------ADLVGISLATGANEACYIPLGHLNDGGGGSDMFS 405 Query: 50 --DPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +P LK LE+ V + N ++ VL I + T++L+ Sbjct: 406 EKPEQVPLDDAVAALKPLLESDAVLKIGQNIKYDLNVLARY---GIAVAPIDDTMILSFD 462 Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 + VG ++ E L + + P EY Sbjct: 463 LDAGRSEGGVG---GHGMDELSERH-LGHTPLSFKEVCGTGRKQIPFGEVPLDKATEYAA 518 Query: 163 GDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D VT + + L+P + E L + + G VD A L++ Sbjct: 519 EDADVTWRLHQHLKPRLAIEHGARIYERVDRPLIPVVAQMERHGIKVDRARLAKLSEEFA 578 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKK 268 E KL++ + L + ++L LF + G +T Q VL Sbjct: 579 TETAKLEKTIHELAG-KEFTVGSPKQLGEVLFDDLGHKGGKKGKSGQYSTDQSVLERLSG 637 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + + ++ + L +A+N D T L ++TGR S QN Sbjct: 638 DGAEIADKVLEWRQLTKLKSTYTDALQQAINPDTGRVHTSYSLVGAQTGRLSSTDPNLQN 697 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +P + +R + G L+ AD + IE R+ Sbjct: 698 IPIRTPIGR-------------------------QIREAFVPENGNVLLAADYSQIELRL 732 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 A MA +AF GED++ T + + +D RA K + A+ Y Sbjct: 733 AAHMADVPELKEAFAEGEDIHARTAREMYG----EADRDTRARAKTINFAILYG-----I 783 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 + L + + + Sbjct: 784 SRWGLAGRLKIEP---------------------------------------DEAQELID 804 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + ++ + +E + + GR Sbjct: 805 TYFKRFPGIQSYIHETLETVRE--------------------------RGYSETLFGRKT 838 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY-- 622 + +G+ + R +Q S DI+ M AG Sbjct: 839 WFPRIGSKNQAERQGS---ERAAINAP------IQGTSADIIKRAMARMMPALEDAGLEH 889 Query: 623 -DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E P+ D AS + +M P+ +PL E + Sbjct: 890 VRMLLQVHDELVFELPEGDVEAASPIIERVMAEAALPAVELSVPLGIEIGTGASW 944 >gi|114705617|ref|ZP_01438520.1| DNA polymerase I [Fulvimarina pelagi HTCC2506] gi|114538463|gb|EAU41584.1| DNA polymerase I [Fulvimarina pelagi HTCC2506] Length = 971 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 106/719 (14%), Positives = 210/719 (29%), Gaps = 181/719 (25%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------------- 49 D ET A ++ + H Sbjct: 380 AFDTETSELS----------AYKGHLVGVSMAITPGEAAYVPLGHVAADADLLTDPDSAE 429 Query: 50 --DPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +P LK+ LE+ + + N ++ V+ I + T++++ + Sbjct: 430 ALGGQIPMDEALVALKDVLEDKSILKIGQNVKYDLLVMLQH---GIAMTPIDDTMLISYA 486 Query: 103 NGLP-----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 + + E G + I+ + KP Sbjct: 487 LDASSGLAGHGMDELSERF--------LGHKPISY----KELCGSGRSAKPIAAVEIDRV 534 Query: 158 GEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTL 207 EY D VT I++ L+P E+ L + + RG VD + L Sbjct: 535 TEYASEDADVTLRIWQVLKPRLAAEGLAHVYERLERPLAPVLARMEQRGIMVDRQILSRL 594 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVL 263 + ++ L+ E+ + + ++L LF + GL T++ T RVL Sbjct: 595 SGNFAQKQAALEDEIAKMAG-EEFNPGSPKQLGEILFGKLGLPGGKKTKSGQWSTDARVL 653 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + + + + ++ +TL M+ +GR+ + ++ TGR S Sbjct: 654 EDLAAEGHELPRRVVDWRQLTKLKGTYTDTLPHHMDENGRIHTSFSMA-STTTGRLSSSE 712 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+P + +R+ +A +GKKL+ AD + Sbjct: 713 PNLQNIPVRTEEGRA-------------------------IRTAFVAPKGKKLLSADYSQ 747 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+LA +A AF+ G D++ T + FNV + R K + Sbjct: 748 IELRILAHIADIPQLKDAFQNGVDIHAMTASEMFNVPVEGMEPSVRRRAKAINF------ 801 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G++ A+ + Sbjct: 802 --------GIIYGISAFGLANQLAI------------------------------PREEA 823 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + K + ++ + + ++ ++ + + Sbjct: 824 GQYIKRYFERFPGIRDYMDKTKAFAKK--------------------------HGYVETL 857 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----- 618 GR Y D+ R +Q + DI+ M+ Sbjct: 858 FGRRAHYPDITAKNP---QIRSFNERAAINAP------IQGTAADIIRRAMVRMEGALAD 908 Query: 619 -KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + + + ++M + P +PL+ E + + Sbjct: 909 ANLSAMMLLQVHDELVFEVEEDEIDETIEVVTNIMEAAASPRVILSVPLEVEAKAALNW 967 >gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila] Length = 893 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 117/703 (16%), Positives = 213/703 (30%), Gaps = 165/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMPQVL 57 +D ET S D ++ + F H + + + L Sbjct: 321 AVDLETSSLDPF----------DCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKKL 370 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 KE LE+ IV N F+ VL +P H T++ A L + Sbjct: 371 KEILEDPGAKIVGQNLKFDYKVLMVKGVEPVPPH--FDTMIAAYLIEPNEKKFNLDDLA- 427 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 LK KM +EL++ Y D +T ++K Sbjct: 428 -LKFLGYKMTSYQELMSFSSP--------LFGFSFADVPVEKAANYSCEDADITYRLYKT 478 Query: 175 LEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L E L + + G VD L++ + +L +E+ Sbjct: 479 LSLKLHEADLENVFYKIEMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYR 538 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL-EDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + +++ LF + G+ T+ +T VL + Sbjct: 539 IAG-EPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEY 597 Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R + + ++ L + +N GR+ + G + TGR S QNLP S +E Sbjct: 598 R-KIQKLKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLPTKSEEGKE 655 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397 +R ++ +V AD + IE R+LA ++G++ Sbjct: 656 -------------------------IRKAIVPQDPNWWIVSADYSQIELRILAHLSGDEN 690 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 LKAFE G D++ T +R FNV P +VT++ R A + G+ Sbjct: 691 LLKAFEEGIDVHTLTASRIFNVKPEEVTEEMRR--------------AGKMVNFSIIYGV 736 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + E++ + + +V Sbjct: 737 TPYGLS------------------------------VRLGVPVKEAEKMIVNYFVLYPKV 766 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + ++ + GR + Sbjct: 767 RDYIQRVVSEAKE--------------------------KGYVRTLFGRRRDIPQLMARD 800 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631 T + R +Q + DI+ M+ K +++ VHDE Sbjct: 801 ---RNTQAEGERIAINTP------IQGTAADIIKLAMIEIDRELKESKMKTKMIIQVHDE 851 Query: 632 IVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E PD ++ ++ MT+ +PL+ + K + Sbjct: 852 LVFEVPDEEKDALVELVKDRMTNVVK--LSVPLEVDVTIGKTW 892 >gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39] gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39] Length = 937 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 102/700 (14%), Positives = 199/700 (28%), Gaps = 162/700 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKE 59 + D ET A ++ +F + + K Sbjct: 366 ISFDTETTGTD----------ANLAELVGLSFSVKPGAGYYIPLPPERTLAQPILDEFKV 415 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117 LEN ++ + N ++ +LK L+I + T++ + + E Sbjct: 416 VLENENIAKIGQNIKYDMLILKWY-GLEIK-GKLFDTMLAHYLIDPDTRHNMDVLSE--N 471 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 +LI +Y D VT ++ P Sbjct: 472 YLCYSPISITKLIG---------PKGKNQGNMRDVPVAQVVDYAAEDADVTLQLANVFRP 522 Query: 178 LS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + E L Y+ I G +D+ ++ ++ + K ++ + Sbjct: 523 MLKDLNAEQLATEVENPLIYVLADIESEGVRIDIETLVNYSKELETDIRKFEKNVYDKCG 582 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L LF L + T+T T + VL + + + + R Sbjct: 583 V-EFNLASPKQLGEVLFDRLQLDPKAKKTKTGQYQTGEDVLLALASKSDIVQDILDFRQ- 640 Query: 283 ASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ L +N GR+ + A+ TGR S QN+P + E Sbjct: 641 LQKLKSTYVDALPLLVNPKTGRVHTSYNQAVAA-TGRLSSNNPNLQNIPIRTERGRE--- 696 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 VR I E L+ AD + IE R++A ++ E+ L+ Sbjct: 697 ----------------------VRRAFIPRDENHVLLSADYSQIELRIIADISKEENMLQ 734 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ T A+ + VA +VT QR K G + Sbjct: 735 AFNQGLDIHTATAAKVYGVAIEEVTSTQRRNAKA--------------VNFGIIYGQS-- 778 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + ++ + + Sbjct: 779 ----------------------------AFGLSQSLGIPRKEAAEIIDQYFTQYPGIKKY 810 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 ++ + N + GR RD+ + Sbjct: 811 MSDTMNFARE--------------------------NGFVETILGRRRYLRDINSANQ-- 842 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVC 634 T R +Q + D++ M+N K + + VHDE+V Sbjct: 843 -TVRGFAERNAINAP------IQGSAADMIKVAMINIHKDMNARGMKSKMTMQVHDELVF 895 Query: 635 ETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + T+ + M + A +P++ E + + Sbjct: 896 DVLKTEVDEMKEIISHRMKTAI--ATTVPIEIEIGQGNNW 933 >gi|221212339|ref|ZP_03585316.1| DNA polymerase I [Burkholderia multivorans CGD1] gi|221167438|gb|EED99907.1| DNA polymerase I [Burkholderia multivorans CGD1] Length = 920 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 110/702 (15%), Positives = 202/702 (28%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + H + Sbjct: 346 AFDTETTALDPMV----------ARLVGLSFAVEPGKAAYLPVAHRGPDMPEQLPLDDVL 395 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ D V + ++ VL +++ TL+ + Sbjct: 396 ARLKSWLESPDRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 453 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + A EY D +T ++ + Sbjct: 454 ALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITLQLHRA 503 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D A + + L+ + Sbjct: 504 LYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLIDDARLQAQSNEIATRLVDLEAQAY 563 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F + L + T + T + VL + P + + Sbjct: 564 ALAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 622 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ + L +N GR+ A TGR + QN+P + Sbjct: 623 R-GLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTAEGRR 680 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA+ G ++V AD + IE R++A ++G+ Sbjct: 681 -------------------------IREAFIAAPGHRIVSADYSQIELRIMAHISGDASL 715 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF GED++ T A F V P +V DQR I KV+ G++ Sbjct: 716 LRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVIN--------------FGLIYGMS 761 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A A + + ++ V+ Sbjct: 762 ------------------------------AFGLASNLGITRDAAKLYIDRYFARYPGVA 791 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + ++ + GR L ++ Sbjct: 792 QYMEDTRATAKE--------------------------RGYVETVFGRRLWLPEINGGNG 825 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 R +Q + D++ M+ K +++ VHDE+ Sbjct: 826 PRRQA---AERAAINAP------MQGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDEL 876 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E PD + L +M +PL AE + Sbjct: 877 VLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 916 >gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17] gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17] Length = 926 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 105/706 (14%), Positives = 197/706 (27%), Gaps = 170/706 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +Y V+ +F HD + Sbjct: 350 AFDTETTSL---------RYMA-AEVVGVSFAVQPFEAAYVPFCHDYMGAPEQLDRDTVL 399 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL---PSALK 110 LK LE+ D V N +++ VL DI + T+V + + Sbjct: 400 AQLKPLLESPDHKKVGQNLKYDKNVLANH---DICLEGIAEDTMVQSYVLNSVSSRHNMD 456 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A+ L E+ + ++ G Y D +T Sbjct: 457 ALALHY------------LGEETTTFESLAGKGAKQLTFNQLELDKAGPYAAEDADITLR 504 Query: 171 IFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L P + L + + RG + + +Q + +L+ Sbjct: 505 LHQALRPQLAATGKLQSVYEDIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERMAELE 564 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 + ++L+ + + GL + T +T + VL Sbjct: 565 TAAYEAAG-ETFNLGSPKQLQVIFYEKLGLPVLKKTPKGAPSTAEPVLQELAHRHELPRL 623 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +R S+ +TL E ++ T + TGR S QN+P S Sbjct: 624 LLEHR-SLSKLKSTYTDTLPELIHHRTGRVHTSYHQAVTATGRLSSSEPNLQNIPIRSEQ 682 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A +G KL+ AD + IE R++A ++ + Sbjct: 683 GRR-------------------------IRQAFVAEKGYKLLAADYSQIELRIMAHLSED 717 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF GED++ T A F V +V DQR K + Sbjct: 718 KGLLTAFAKGEDIHKATAAEVFGVTLEEVNTDQRRSAKAINF--------------GLIY 763 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + ++ + +++ Sbjct: 764 GMSAFGLARQLDVE------------------------------RKVAQQYIDRYFERYP 793 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + + + + + + GR L ++ Sbjct: 794 GVLTYMDNIRKQAHE--------------------------DGYVETLFGRRLYLPEINT 827 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTV 628 + R +Q + DI+ M+ + + + V Sbjct: 828 RN---KQLQQAAERTAINAP------MQGTAADIIKLAMIEVERWLLAEYPDSARMTMQV 878 Query: 629 HDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE++ E + L M+ A +PL E + Sbjct: 879 HDELIIEVKEEAVEVVREGLIKRMSGAAELA--VPLLVEAGVGDNW 922 >gi|170691111|ref|ZP_02882277.1| DNA polymerase I [Burkholderia graminis C4D1M] gi|170144360|gb|EDT12522.1| DNA polymerase I [Burkholderia graminis C4D1M] Length = 913 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 112/701 (15%), Positives = 203/701 (28%), Gaps = 162/701 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 339 SFDTETTSLDPMV----------AQIVGLSFSVEAGHAAYVPVAHRGPDAPVQLPRDEVL 388 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ + V + ++ VL +++ TL+ + Sbjct: 389 AKLKPWLESAEHKKVGQHLKYDEQVLANY-GIEMRGVE-HDTLLQSYVLESHRPHDMDNL 446 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + A EY D +T + + Sbjct: 447 ALRHLGIKTI----------KYEDVAGKGAQQIGFDEVALDKAAEYAAEDADITLRLHQT 496 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + G +D + + +L+ E Sbjct: 497 LYPQLAAEETLEHVYRDIEVPTSRVLRKMERSGVLIDAEKLRQQSSEIATRLIQLESEAY 556 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F L + T + T + VL + P + + Sbjct: 557 VLAGG-EFNLGSPKQIGQIFFERLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKILLEH 615 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N++ T + TGR + QN+P + Sbjct: 616 R-GLSKLKSTYTDKLPRMVNANTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRR- 673 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA G KLV AD + IE R++A ++G++ L Sbjct: 674 ------------------------IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLL 709 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F+V P +V+ DQR + KV+ G++ Sbjct: 710 RAFSEGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINF--------------GLIYGMSS 755 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A A + + ++ V+ Sbjct: 756 FGL------------------------------ASNLGITRDAAKLYIDRYFARYPGVAR 785 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 +E + + + GR L ++ Sbjct: 786 YMDETRLSAK--------------------------AKGYVETVFGRRLWLPEINGGNGP 819 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633 R +Q + D++ M+ K G +++ VHDE++ Sbjct: 820 RRQA---AERAAINAP------MQGTAADLIKLSMIAVQKWIEESNIGTRMIMQVHDELI 870 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E PD + + L LM A +PL AE + Sbjct: 871 LEVPDEELSDVRKRLPELMCGVA--ALKVPLVAEVGAGLNW 909 >gi|325521672|gb|EGD00436.1| DNA polymerase I [Burkholderia sp. TJI49] Length = 641 Score = 402 bits (1033), Expect = e-109, Method: Composition-based stats. Identities = 111/702 (15%), Positives = 201/702 (28%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 67 AFDTETTSLDPMV----------AQLVGLSFSTEPGKAAYLPVAHRGPDLPEQLPLDDVL 116 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ + V + ++ VL +++ TL+ + Sbjct: 117 ARLKPWLESAERKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 174 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + A EY D +T ++ Sbjct: 175 ALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITLQLHHA 224 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D A + + +L+ + Sbjct: 225 LYPQVAREPGLQRVYREIEMPVSLVLRKMERTGVLIDDARLQAQSTEIATRLIELEGQAY 284 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + T + T + VL + P + + Sbjct: 285 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 343 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ + L +N GR+ A TGR + QN+P + Sbjct: 344 R-GLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTAEGRR 401 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IAS G ++V AD + IE R++A ++G+ Sbjct: 402 -------------------------IREAFIASPGHRIVSADYSQIELRIMAHISGDASL 436 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF GED++ T A F V P +V DQR I KV+ G++ Sbjct: 437 LRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVIN--------------FGLIYGMS 482 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A A + + ++ V+ Sbjct: 483 ------------------------------AFGLASNLGITRDAAKLYIDRYFARYPGVA 512 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + ++ + GR L ++ Sbjct: 513 QYMEDTRTVAKE--------------------------KGYVETVFGRRLWLPEINGGNG 546 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 R +Q + D++ M+ K +++ VHDE+ Sbjct: 547 PRRQA---AERAAINAP------MQGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDEL 597 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E PD + L +M +PL AE + Sbjct: 598 VLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 637 >gi|282858640|ref|ZP_06267798.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010] gi|282588558|gb|EFB93705.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010] Length = 920 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 192/700 (27%), Gaps = 159/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVL 57 L +D ET S + ++ +F ++ D + Sbjct: 348 KVLSLDTETTSTDTM----------QAELVGLSFAIEEKKAFYVAIPSDRREAEKFVNIF 397 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115 + EN ++ V N ++ VL +DI + T++ + + E Sbjct: 398 RPLYENENILKVGQNIKYDYEVLAQY-GIDIK-GKMFDTMIAHYLIQPELHHNMDYMAET 455 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L K ELI K + EY D +T +++K L Sbjct: 456 L--LGYKTVHIDELIG---------AKGKHQKNMRDLSPTDIYEYASEDADITLQLYKVL 504 Query: 176 EPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 EP E L + + G C+D ++I + + + Sbjct: 505 EPKLKEVNAEDLFWKIEMPLVRVLADMEMNGVCLDTDALAETSKIFTDRMNEYEALIYEQ 564 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL S + P + R Sbjct: 565 -ASEKFNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTSEEVLQSLEASAPIVGNILKYR 623 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N T + TGR S QN+P + +E Sbjct: 624 -GIKKLLSTYIDALPKLINKRTGHIHTSFNQALTATGRLSSSDPNLQNIPVRTDDGKE-- 680 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R C I AD + IE R++A ++ ++ ++ Sbjct: 681 -----------------------IRKCFIPEPKCLFFSADYSQIELRIMAHLSQDENMME 717 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +G D++ T A+ ++V +V+ QR K G+ Sbjct: 718 AFRSGHDIHRATAAKIWHVPMEEVSDAQRKKAKQANF--------------GIIYGITTY 763 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A + + + + + V Sbjct: 764 GLAQR------------------------------MGIPNGEAKELIEGYFKTFPSVKAF 793 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + Q + R D+ + Sbjct: 794 MEKAKQTARE--------------------------KGYAETLFNRRRYLSDINSKN--- 824 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 T R +Q DI+ M+ ++L VHDE+ Sbjct: 825 GTVRGFAERNAINAP------IQGTEADIIKVAMIRIWERFRRENIRSKMILQVHDELNF 878 Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + M + + +PL A+ + Sbjct: 879 SVFPEEKEKVERIVIEEMQAA--YPLNVPLVADAGWGNNW 916 >gi|261401773|ref|ZP_05987898.1| DNA polymerase I [Neisseria lactamica ATCC 23970] gi|269208086|gb|EEZ74541.1| DNA polymerase I [Neisseria lactamica ATCC 23970] Length = 939 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 105/712 (14%), Positives = 206/712 (28%), Gaps = 171/712 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52 + ID ET S A + ++ + F H Sbjct: 354 KIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQY 403 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110 + LK LEN+ + + N +++ V + + ++ + L Sbjct: 404 VLDRLKPHLENSALKKIGQNLKYDQHVFANY-GIALNGI-VGDAMLASYIIESHLGHGLD 461 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + G+ L E+ + A EY D Sbjct: 462 ELS------------GRWLGLETITYESLCGKGAKQIGFADVAIGPATEYAAQDADFALR 509 Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L E + + + G +D A + + E KL+QE Sbjct: 510 LEAHLRAQMDDKQLEMYEKMELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQE 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAIQ 275 + + ++L+ LF + G+ + L + +T + VL P Sbjct: 570 AYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKI 628 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + NR ++ + L E ++ + T + TGR +G QN+P + Sbjct: 629 ILKNR-SLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVAITGRLAGNNPNLQNIPIRTEE 687 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + VR A G +V AD + IE R++A ++G+ Sbjct: 688 GRK-------------------------VRRAFTAPPGSVIVSADYSQIELRIMAHLSGD 722 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF+ GED++ T A F +AP V+ +QR K + Sbjct: 723 KTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTIN--------------FGLIY 768 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + ++ + + ++ Sbjct: 769 GMGQYGLAKSLGIDNLS------------------------------AKNFIDRYFARYP 798 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V+E + + GR L D+ + Sbjct: 799 GVAEYMQRARECA--------------------------AGQGYVETLFGRRLYLPDIRH 832 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------------AGY 622 + + R +Q + D++ M++ ++ Sbjct: 833 TNA---NIRARAERAAINAP------MQGTASDLIKRAMIDVSRWLSECEASPWDDLLQS 883 Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++ VHDE+V E P+ + L +M + +PL AE + Sbjct: 884 KLIMQVHDELVLEVPEAELDLVKEKLPQMMAAVDDGMLDVPLAAEVGAGMNW 935 >gi|332531416|ref|ZP_08407320.1| DNA polymerase I [Hylemonella gracilis ATCC 19624] gi|332039085|gb|EGI75507.1| DNA polymerase I [Hylemonella gracilis ATCC 19624] Length = 924 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 106/704 (15%), Positives = 200/704 (28%), Gaps = 159/704 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + +D ET S ++ ++ +F +HD + Sbjct: 346 VALDTETTSLDEMV----------AEIVGISFSVTPGEAAYIPLMHDYPDAPAQLPRDEV 395 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKA 111 LK LEN + + ++R V +++ + T++ + + P L + Sbjct: 396 LAKLKGWLENPAKKKLGQHVKYDRHVFANH-GIEVQGY-VHDTMLQSYVLEVHKPHGLAS 453 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E + P + + EY D T ++ Sbjct: 454 LAERH------------LGRKGINYEDLCGKGAKQIPFSQVSIDKAAEYSCEDSDQTLDV 501 Query: 172 FKRLEPLSSKE--------------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + L P K+ I G +D + + + Sbjct: 502 HRTLWPRLEKDAQEGGKLRFIYELEIASSETLYRIERNGVLIDAPTLAQQSHELGQRILQ 561 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273 L+QE L + +++ F + GL + T +T + VL P Sbjct: 562 LEQEAYELAGQP-FNLGSPKQIGEIFFGKLGLPIVKKTATGAPSTDEEVLEKLADDYPLP 620 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 ++ +R S+ + L + GR+ A TGR S QN+P Sbjct: 621 AKILEHR-GLSKLKGTYTDKLAQMALPGTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPIR 678 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + VR IA G + AD + IE R++A + Sbjct: 679 TPEGRR-------------------------VREAFIAPPGCLIASADYSQIELRIMAHL 713 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G+ L AF G D++ T + F V + VT +QR K + L Y Sbjct: 714 SGDAALLLAFHDGMDVHRATASEVFGVPTSAVTSEQRRYAKTINFGLIYGMS-----SYG 768 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 L ++ A + + + + + + + G R Sbjct: 769 LAKSLGIDNTAAKNYIERYFDRFAGVKRYMDETRASAKAKGYVETVFGR---------RL 819 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ P+G + Sbjct: 820 YLPEINS-------------------------------------------PNGPRRGGAE 836 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + + T L + + ++A +++ VHDE+ Sbjct: 837 RAAINAPMQGTAADLIKLSMNAVQRV----------------LDAEGRKTKMIMQVHDEL 880 Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V E P+ + + LM +PL AE + K Sbjct: 881 VFEVPENEVDWLKREVPKLMAGVAQ--LRVPLLAEVGVGVNWDK 922 >gi|315225340|ref|ZP_07867154.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287] gi|314944613|gb|EFS96648.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287] Length = 932 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 96/700 (13%), Positives = 201/700 (28%), Gaps = 161/700 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLK 58 + D ET S L + ++ +F + H D + + + Sbjct: 361 EVCFDTETTSVNAL----------EAELVGISFCWSAHKGYYVPFPTDKVEATKLLETFR 410 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 EN + V N ++ VL+ N+++ T++ + + E Sbjct: 411 PFFENERIGKVGQNLKYDLKVLQNY-NIEVR-GALFDTMIAHYLLNPDMRHNMDILSETY 468 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + LI + EY D VT ++ + Sbjct: 469 --LNYTPIAIESLI----------GKGKAQRSMRTVPLDQVKEYAVEDADVTWQLKNVFK 516 Query: 177 PLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 K L + + G +DV + +D + +L+ + Sbjct: 517 EEMPKVNAEKIYTDLEAPLIKVLAAMEREGVNLDVPFLKEYAKTLDADIAQLEATIAEQA 576 Query: 227 YGLVSSSRCLEKLKTWLFLETGLH-LEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L LF + + T+T T + VL+ + Sbjct: 577 G-ESFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFASKHKIVADIL-EWR 634 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + ++ L +N T + TGR S QN+P + Sbjct: 635 QVQKLKSTYVDALPLEVNKLTGRVHTTYMQTVAATGRLSSNNPNLQNIPIRTPRG----- 689 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 VR IA L+ AD + IE R++A ++ E + Sbjct: 690 --------------------QQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMID 729 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 +F ED++ +T A+ F+V +VT++QR+ K + + G++ Sbjct: 730 SFLRNEDIHRSTAAKVFHVPLEEVTREQRSHAKTVNFGII--------------YGVSAF 775 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + + + + Sbjct: 776 GLSAQ------------------------------TNLSRSESKELIDTYYATYPNLRNY 805 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 ++ Q ++ + + GR D+ + + Sbjct: 806 ISKQIQFAQE--------------------------HGYVETVLGRRRYLPDIHSRNQVV 839 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 + +Q + DI+ M+ ++L VHDE+V Sbjct: 840 RGAAERN---------AVNAPIQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDELVF 890 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + P T+ ++ M S + A +PL A+ + Sbjct: 891 DVPKTELNIVKPLIKEAMESAFNLA--VPLVADLGVGDNW 928 >gi|219815966|gb|ACL37085.1| DNA polymerase I [uncultured bacterium] Length = 927 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 97/706 (13%), Positives = 189/706 (26%), Gaps = 169/706 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 +D ET S ++ +F HD + Sbjct: 352 AVDTETTSLD----------YRLARIVGVSFALQAGEAFYIPIGHDYMGAPEQLDAQFVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLP---SALK 110 +LK LEN + + + ++ V I + W T++ + + Sbjct: 402 DILKPILENPAIGKIGQHMKYDAHVFNNH---GISLAGWAFDTMLASYVLNPTATRHGMD 458 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + + L E + ++ Y D +T Sbjct: 459 DLAQYY------------LNYTTTTFEQIAGKGAKQLTFNQIELEKAAPYAAEDADITWR 506 Query: 171 IFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ E + + + G +D+ L Q + L+ Sbjct: 507 LYEHFSKELAKIPRLERLLLDAEMPAAQVLYEMENNGIRLDIPFLAELGQRFGAQILTLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQ 275 L + ++L LF + G+ T + T + +L P Sbjct: 567 SHAIELAGQP-FNVSSPKQLGEILFDKLGIAGGKKTASGQYATGEAILEKI--DHPIIAT 623 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R S+ ++L+ + + T + TGR S QN+P Sbjct: 624 ILEYR-SLSKLKSTYTDSLIAQSDPATQRVHTSYHQAIAATGRLSSTDPNLQNIPIRGEV 682 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA +G+ ++ AD + IE R++A + + Sbjct: 683 GR-------------------------QIRQAFIAPKGRIILAADYSQIELRLMAHFSQD 717 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + LKAF G D++ T A +A VT DQR K + Sbjct: 718 EALLKAFRDGRDIHQATAAEVMGIALEDVTSDQRRQAKAIN--------------FGLLY 763 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + + ++ Sbjct: 764 GMS------------------------------AFGLAKQLNLSRAEAQEYITLYFSRYP 793 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + + + GR L ++ Sbjct: 794 SVHDYMENTR--ALAAEQGYVETVL------------------------GRRLYMENIRA 827 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHDE 631 + + R Q + DI+ M++ K ++L VHDE Sbjct: 828 GNAMVRQA---AERAAINAPL------QGSAADIIKLAMISVDQSLPKEHAKMLLQVHDE 878 Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKG--LPLKAEGYESKRYR 674 +V E + ++L LM + +PL+ E + Sbjct: 879 LVFEVDEDKADEVTALLKKLMPAVLQGRADIAVPLEIEVGRGVNWG 924 >gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4] gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4] Length = 901 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 103/698 (14%), Positives = 194/698 (27%), Gaps = 155/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S Y E ++ +F HD + Sbjct: 326 AFDLETNSLD---------YIE-AEIVGLSFAIKPKEAAYVPLAHDYDAAPLQLAREGVL 375 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 L+ L++++ V N F+R VL +++ R +++ + + + Sbjct: 376 ARLQPLLQDSNRGKVGQNLKFDRNVLANY-GIELEGIR-HDSMLESYVLHSTASRHNMDS 433 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + K L E + P ++ Y D + ++ Sbjct: 434 LAL------------KYLQRSTISYEEVAGKGAKQLPFNQVPIDKATRYAAEDADICLQL 481 Query: 172 FKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 P +E+ L + + G +D + + K++Q Sbjct: 482 HHYFWPRLQQEEALCRLYQELEIPLIPVISRMERNGVQIDATQLKAHSAELTARLEKIEQ 541 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 E L + ++++ L+ + L + T +T + VL P + Sbjct: 542 EAFELAG-EPFNLASPKQIQAILYDKLKLPITRKTPTGQPSTAETVLQELALDYPLPQLL 600 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R S+ + L +N T + TGR S QN+P S Sbjct: 601 LEYR-ALSKLKSTYTDRLPLQVNPRTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRSAEG 659 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA G L+ AD + IE R++A ++ ++ Sbjct: 660 RR-------------------------IRQAFIAPPGYCLLAADYSQIELRIMAHLSDDE 694 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AFE GED++ T A F VT +QR K + L Y A + Sbjct: 695 GLLAAFEAGEDIHQRTAAEIFRTPLEGVTPEQRRSAKAINFGLIYGMSAHGLAQ-----Q 749 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L ++ A + + + + + + + G + RQ Sbjct: 750 LGISRSAAQHYIERYFHRYPGVKAYMDAICQQARQKGYVETLFGRRLYLPEIHSRQA--- 806 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + N+ + G A KR + + Sbjct: 807 --QRRNQAERMAINAPMQGTAADIIKRAMLRADQWLQK---------------------- 842 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 Q + +++ VHDE+V E Sbjct: 843 --------------------------QGSNA---------------RMIMQVHDELVFEV 861 Query: 637 PDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + + + M +PL E + Sbjct: 862 AEAELDTTTAAIRENMAGAAQ--IKVPLIVEMGSGANW 897 >gi|87198303|ref|YP_495560.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444] gi|87133984|gb|ABD24726.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444] Length = 945 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 100/711 (14%), Positives = 185/711 (26%), Gaps = 164/711 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51 + ID ET + + ++ + + H Sbjct: 358 RVVAIDTETSALDAMR----------ADLVGVSLALGPNDACYIPLGHGGSDMFAEKPLQ 407 Query: 52 ----VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107 LK LE+ V V N ++ +L I + T+V++ Sbjct: 408 VDRAEALAALKPLLESDAVLKVGQNIKYDLNILARQ---GIMVSPIDDTMVMSFCLDAGR 464 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 + + ++ E L+ K + + Y D V Sbjct: 465 SETGLA---GHGMDELSERH-LLHTTMKFKELCGTGKKAISFAEVPLADATRYAAEDADV 520 Query: 168 TREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 T + + +P ++ L + + G VD L+ + + Sbjct: 521 TWRLHRLFQPRLAGEGGTRIYQKVDRPLIPVVAMMERNGIKVDRERLSGLSTEFAAQIAR 580 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKKLTPQA 273 L+ + + ++L LF + G +T Q VL + Sbjct: 581 LEGVIHEKCGMS-FTIGSPKQLGEVLFDKLGYKGGKKGKTGQYSTDQSVLEGLAAQGAEV 639 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + + S+ + L A+N T L ++TGR S QN+P + Sbjct: 640 ATLVLEWRQLSKLKSTYTDALQAAINPHTGRVHTSYSLVGAQTGRLSSNEPNLQNIPIRT 699 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A G L+ AD + IE R+ A MA Sbjct: 700 EIGR-------------------------QIRDAFVAEPGNVLLAADYSQIELRLAAHMA 734 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 +AF GED++ T F G A Sbjct: 735 DVPALKEAFAAGEDIHARTAMEMFGTVDRDTR------------------GRAKTINFAI 776 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ + + + ++ Sbjct: 777 LYGIS------------------------------RWGLGGRLGVSADEAQAMIDRYFER 806 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + +E ++ + GR + + Sbjct: 807 FPGIQRYIHETLESVRE--------------------------RGYSETLFGRKTWFPRI 840 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY---DIVL 626 + + R +Q S DI+ M T+AG ++L Sbjct: 841 SSKNQAERQGS---ERAAINAP------IQGTSADIIKRAMARMMPALTEAGLGHVRMLL 891 Query: 627 TVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWA--KGLPLKAEGYESKRYR 674 VHDE+V E P D A ++ +M + A +PL E + Sbjct: 892 QVHDELVFELPQGDVEAAKPVIERVMATAAEPAVKLSVPLGVEIGTGLSWG 942 >gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603] gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603] Length = 936 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 96/702 (13%), Positives = 193/702 (27%), Gaps = 162/702 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD----CVHDPVMPQVL 57 ++ D ET A ++ +F C + Sbjct: 363 KSICFDTETTGTD----------ANQCELVGLSFSIKKGEAWYVPVPVNCDEIQPIVDEF 412 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K EN + + N F+ VLK +N+ + T++ + + E Sbjct: 413 KPIFENPAIGKIGQNIKFDMLVLK-YYNVTMQ-GELFDTMLAHYIIDPDTRHNMDILAE- 469 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 LI +Y D VT ++ + Sbjct: 470 -NYLGYSPVSITTLIG---------AKGKGQGTMRDVEIEKIKDYAAEDADVTLQLKEVF 519 Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 EP + E L Y+ I G +D ++ ++ + +KL++ + Sbjct: 520 EPKLQQVGGTKLATDIENPLIYVLADIEFEGVRIDHDTLKEFSKDLETDISKLEKTVYEK 579 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + ++L LF + L + T+T T + VL + + + + R Sbjct: 580 AGVK-FNIASPKQLGEVLFEKLNLDAKAKKTKTGQYQTGEDVLLALANKSDIVRDILDFR 638 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L +N GR+ + A+ TGR S QN+P + E Sbjct: 639 Q-LQKLKSTYVDALPLMVNPKTGRVHTSYNQAVAA-TGRLSSNNPNLQNIPIRTERGRE- 695 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398 VR I + +V AD + IE R++A ++ + Sbjct: 696 ------------------------VRKAFIPRNDDHVIVSADYSQIELRIIAEISKDANM 731 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF G D++ T A+ + +V R K + G + Sbjct: 732 MDAFIQGIDIHTATAAKVYGKTLDEVDGTMRRNAKAVN--------------FGIIYGQS 777 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + + ++ + Sbjct: 778 ------------------------------AFGLSQNLNIPRKEAADIIDQYFAQYPGIK 807 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 ++ + N + GR RD+ + + Sbjct: 808 NYMSDTMNFARE--------------------------NGFVQTLMGRRRYLRDINSANA 841 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEI 632 T R +Q + D++ M+N K + + VHDE+ Sbjct: 842 ---TVRGYAERNAINAP------IQGSAADMIKIAMINIHREFKKQKLDSRMTMQVHDEL 892 Query: 633 VCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 V + ++ + M + +P+ E + Sbjct: 893 VFDVHQSEIEIVKPIIMQNMQTAFK--TEVPIVVEIGTGANW 932 >gi|281422322|ref|ZP_06253321.1| DNA polymerase type I [Prevotella copri DSM 18205] gi|281403643|gb|EFB34323.1| DNA polymerase type I [Prevotella copri DSM 18205] Length = 923 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 96/701 (13%), Positives = 197/701 (28%), Gaps = 161/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQV---L 57 L +D ET S + D ++ +F + + ++ Sbjct: 351 NILSLDTETTSTTAI----------DAELVGLSFAVKEKEAFYVAIPANREEALKIVNIF 400 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K EN ++ V N ++ VL ++I + T++ + + E Sbjct: 401 KPLYENPEILKVGQNIKYDYEVLINY-GIEIQ-GKMFDTMLAHYLIQPELYHNMDYLAEV 458 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + +ELI K A EY D +T + L Sbjct: 459 --FLNYQTIHIEELIG---------PKGKNQKSMRDLAPSDIYEYAAEDADITLRLKNVL 507 Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E + E L + + G C+D ++ + +++ + L Sbjct: 508 ESKLKEIDCEDLFWNVEMPLVPVLAHMEMTGVCIDTDTLKETSENLTNRLNEIEHHIYEL 567 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + ++ LF + + T+T T + VL + +P ++ N R Sbjct: 568 AG-ESFNIASPRQVGEILFGKMKIVEKPKKTKTGQYVTSEEVLQQLRSKSPIIDEILNYR 626 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L + +NS G + + + TGR S QN+P +E Sbjct: 627 -GLKKLLGTYIDALPKLINSRTGHIHASFNQAI-TATGRLSSSDPNLQNIPVRDDDGKE- 683 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R C I G AD + IE R++A ++ + + Sbjct: 684 ------------------------IRRCFIPEPGCLFFSADYSQIELRIMAHLSQDPNMV 719 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G D++ T A+ ++ +VT QR K G+ Sbjct: 720 EAFREGSDIHAATAAKIWHEDIKEVTDAQRKKAKTANF--------------GIIYGITT 765 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + +++ + + + V Sbjct: 766 FGLAQRMNIEN------------------------------REAKQIIEDYFRTFPGVQA 795 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + R D+ + Sbjct: 796 YMEKAKEMARE--------------------------KGYAETLFHRRRYLPDINSKN-- 827 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 T R +Q DI+ M+ +++ VHDE+ Sbjct: 828 -GTVRGFAERNAINAP------IQGSEADIIKVAMIRIFNRFRAEGIRSKMIIQVHDELN 880 Query: 634 CETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + M + + +PL A+ + Sbjct: 881 FSVYPEEKEKVEKIVVEEMQNA--YQLSVPLVADAGWGNNW 919 >gi|172062801|ref|YP_001810452.1| DNA polymerase I [Burkholderia ambifaria MC40-6] gi|171995318|gb|ACB66236.1| DNA polymerase I [Burkholderia ambifaria MC40-6] Length = 917 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 111/702 (15%), Positives = 202/702 (28%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + H + Sbjct: 343 AFDTETTALDPMI----------ARLVGLSFSIEPGKAAYLPVAHRGPDMPEQLPIDEVL 392 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ D V + ++ VL +++ TL+ + Sbjct: 393 ARLKPWLESADRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 450 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + A Y D +T ++ + Sbjct: 451 ALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALEQAAAYAAEDADITLQLHQA 500 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D AL + + +L+ + Sbjct: 501 LYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAY 560 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + T + T + VL + P + + Sbjct: 561 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 619 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ + L +N GR+ A TGR + QN+P + Sbjct: 620 R-GLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTAEGRR 677 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IAS G ++V AD + IE R++A ++G+ Sbjct: 678 -------------------------IREAFIASPGHRIVSADYSQIELRIMAHISGDASL 712 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF GED++ T A F V P +V DQR I KV+ G++ Sbjct: 713 LRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIYGMS 758 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A A + + ++ V+ Sbjct: 759 ------------------------------AFGLASNLGITRDAAKLYIDRYFTRYPGVA 788 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + A + + GR L ++ Sbjct: 789 QYMEDTRTAAKD--------------------------KGYVETVFGRRLWLPEINGGNG 822 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 R +Q + D++ M+ + +++ VHDE+ Sbjct: 823 PRRQA---AERAAINAP------MQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDEL 873 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E PD + L +M +PL AE + Sbjct: 874 VLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913 >gi|239616633|ref|YP_002939955.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1] gi|239505464|gb|ACR78951.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1] Length = 896 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 119/708 (16%), Positives = 219/708 (30%), Gaps = 167/708 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVM 53 + ID ET S + ++ + D H+ + Sbjct: 322 DVISIDLETSSLDP----------HEAKIVGISVAIKDGEGFYIPVNHESSDWQADEKQV 371 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALK 110 LKE LE++ IV N F+ +L+ ++ P+ T++ A S L Sbjct: 372 LLRLKELLEDSGTKIVGQNLKFDYEILEKH-GIE-PVVPHFDTMIAAYLLNPDSRRFNLD 429 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + LK + EL+ + + +Y D + Sbjct: 430 DLA--LKFLGYRTTSFSELMN----------KNQLKDQFEKVSVEEAAKYSVEDADIALR 477 Query: 171 IFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +++ L E EL + + G ++V L++ + K+ + Sbjct: 478 LYRVLSKKLYESDLDNIFHKIEMELIPVLAELELNGVYMNVESLKNLSEEYEKRLGKIRE 537 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 EL L + ++ LF + GL+ T+ +T VL P ++ Sbjct: 538 ELFELAG-EPFNPNSPTQVSKILFEKLGLNPPKKTKHGAYSTSAAVLEELVNEHPIIQKL 596 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R + + L+TL +N GR+ + G + TGR S QNLP Sbjct: 597 LDYR-KYQKLKSTYLDTLPTLVNPVTGRIHASYHQTG-TGTGRLSSSNPNMQNLPIKGEE 654 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394 +E +R CV+ + K++ AD + IE RVLA + Sbjct: 655 GKE-------------------------IRKCVVPQKSDWKIISADYSQIELRVLAHFSE 689 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ + AF+ GED++ T +R + V+ VT + R +GK++ ++ Y Sbjct: 690 DERLISAFKNGEDVHALTASRLYGVSVKDVTPEMRQVGKMVNFSIIY-----GISPYGLA 744 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L + T E + + + Sbjct: 745 RRLKIKTHI---------------------------------------AENMISNYFNAY 765 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + NE+ ++ + GR Sbjct: 766 PGVRKFINEVIHEAKE--------------------------KGYVRTLFGRKREIPHFR 799 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 + R +Q + DI+ M+ K +L V Sbjct: 800 TRNKMKIQ---EGERIAINTP------IQGTAADIMKLAMIKIHKMVKEEGLEAFPILQV 850 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 HDE+V E P T+ +L M+ +PL+ + + + K Sbjct: 851 HDELVFEAPATEVDRVCDILTRGMSGVVE--LKVPLEVDVAVNSYWGK 896 >gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A] gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A] Length = 945 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 101/701 (14%), Positives = 199/701 (28%), Gaps = 161/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVL 57 L +D ET S + ++ +F + + D M + Sbjct: 373 DILSLDTETTSTNTM----------QAELVGLSFSIEPNKAFYIAIPSDRDKAQKMVNIF 422 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115 K E + + N ++ VL ++I + T++ + + E Sbjct: 423 KPLYEEDKILKIGQNIKYDYEVLAQY-GINIK-GKMFDTMIAHYLIQPELHHNMDYMAET 480 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L + K ELI K + RN EY D +T +++ L Sbjct: 481 L--LNYKTIHIDELIGAKGKEQ----KNMRNLSPTSI-----YEYACEDADITLQLYNVL 529 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P E L + + G C+D + I + ++ Sbjct: 530 LPKLKDVNAEKLFWDIEMPLVRVLANMEMNGVCLDTDALQETSNIFTKRMQTYEAQIYEQ 589 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+ T + VL S + +P + N R Sbjct: 590 AG-EKFNISSPKQVGDILFGKMQIMEKPKKTKKGQYVTNEEVLQSLEASSPIVRNILNYR 648 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L + +N GR+ + + TGR S QN+P + +E Sbjct: 649 -GIKKLLGTYVDALPKLINKRTGRIHTSFNQA-LTATGRLSSSDPNLQNIPVRTDDGKE- 705 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R C I AD + IE R++A ++ ++ + Sbjct: 706 ------------------------IRKCFIPEPECVFFSADYSQIELRIMAHLSKDENMI 741 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF +G D++ T A+ +++ VT QR K G+ Sbjct: 742 EAFRSGYDIHRATAAKIWHIPMEDVTDTQRKKAKQANF--------------GIIYGITT 787 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A +++ + + +V + Sbjct: 788 YGLAQR------------------------------MGIPNNEAKKLIEDYFNTFPKVHD 817 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + GR D+ + S Sbjct: 818 FMESAKELARK--------------------------KGYAETIFGRRRYLNDINSKNS- 850 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 T R +Q DI+ M+ + ++L VHDE+ Sbjct: 851 --TVRGFAERNAINAP------IQGTEADIIKVAMIRIYERFCRENIRSKMILQVHDELN 902 Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + M + + +PL A+ K + Sbjct: 903 FSVFPDEKERVEHIVLEEMQAACT--LSVPLIADAGWGKNW 941 >gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM 30120] gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM 30120] Length = 934 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 105/695 (15%), Positives = 207/695 (29%), Gaps = 147/695 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD + Sbjct: 357 AFDTETDSLD----------TQEARLVGMSFAIEAGRAAYLPVGHDYLDAPAQLSLDEVI 406 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 V+K LEN + + N ++ VL ++++ T++ + + + Sbjct: 407 AVMKPILENEKIGKIGQNLKYDAEVLLNY-DIELKGIA-FDTMLESYVLNSVAGMG---- 460 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + + L + E + ++ Y D VT + + Sbjct: 461 --RHDMDSLADRH-LNHKTVSFEEIAGKGKKQLTFNQIPLEQAANYAAEDADVTLLLHQA 517 Query: 175 LEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + + +G +D A+ +Q++ +L+++ Sbjct: 518 LYPQLESEPKLAHVFQNIEMPLVPVLVRMERKGVLIDAAVLTAQSQVITARLAELEKQAF 577 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L + ++L+T LF + L + T + T + VL + + Sbjct: 578 DLAG-EEFNLASPKQLQTILFEKLQLPVIKKTPSGAASTNEEVLEELALNHALPKLLLEH 636 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N + T + TGR S QN+P + Sbjct: 637 R-SLAKLKSTYTDKLPLMINPRTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRTEEGRR- 694 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A +G K++ AD + IE R++A ++ ++ L Sbjct: 695 ------------------------IRQAFVARDGYKVMAADYSQIELRIMAHLSQDKGLL 730 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F V +VT DQR K + L Y A L + Sbjct: 731 TAFAQGKDIHRATAAEVFGVPLEEVTSDQRRSAKAINFGLIYGMSA-----FGLARQLGI 785 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + E + + + E + G + + + Sbjct: 786 PRGEAQRYMDLYFERYPGVLRYMENTRLQASERGYVETLEGR--RLYLADIKSSN-GMRR 842 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G A K+ + + N L PS Sbjct: 843 --KAAEREAINAPMQGTAADIIKKAMIAVD------NWLETEKPS--------------- 879 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 D+L + VHDE+V E ++ Sbjct: 880 ---------------------------ADML---------------MQVHDELVFEVKES 897 Query: 640 DEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + + LM + + +PLK E + Sbjct: 898 ELEKVQAKVQELMEQSMT--LDVPLKVEVGVGSNW 930 >gi|78063065|ref|YP_372973.1| DNA polymerase I [Burkholderia sp. 383] gi|77970950|gb|ABB12329.1| DNA polymerase A [Burkholderia sp. 383] Length = 917 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 113/703 (16%), Positives = 201/703 (28%), Gaps = 166/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 343 AFDTETTSLDPML----------ARLVGLSFSVESGKAAYLPVAHRGPDMPEQLPLDEVL 392 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113 LK LE+ D V + ++ VL DI ++ TL+ + Sbjct: 393 ARLKPWLESADRKKVGQHLKYDAQVLANY---DIALNGIEHDTLLESYVVESHRTHDMDS 449 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ K K E + A EY D +T ++ Sbjct: 450 LALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALTQAAEYAAEDADITLQLHH 499 Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E + + + + G +D + + +L+ + Sbjct: 500 ALYPQVAREPGLLHVYREIEMPVSLVLRKMERTGVLIDDVRLQAQSTEIATRLIELEAQA 559 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + +++ F + L + T + T + VL + P + Sbjct: 560 YELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLE 618 Query: 279 NRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R S+ + L +N GR+ A TGR + QN+P + Sbjct: 619 HR-GLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTAEGR 676 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R IAS G ++V AD + IE R++A ++G+ Sbjct: 677 R-------------------------IREAFIASPGHRIVSADYSQIELRIMAHISGDAS 711 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L+AF GED++ T A F V P +V DQR I KV+ G+ Sbjct: 712 LLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIYGM 757 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A A + + ++ V Sbjct: 758 S------------------------------AFGLASNLGITRDAAKLYIDRYFARYPGV 787 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 ++ + ++ + GR L ++ Sbjct: 788 AQYMEDTRSVAKE--------------------------KGYVETVFGRRLWLPEINGGN 821 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631 R +Q + D++ M+ K +++ VHDE Sbjct: 822 GPRRQA---AERAAINAP------MQGTAADLIKLSMIAVDDWLTRDKLASRMIMQVHDE 872 Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E PD + L +M +PL AE + Sbjct: 873 LVLEVPDGELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913 >gi|304309855|ref|YP_003809453.1| DNA polymerase A [gamma proteobacterium HdN1] gi|301795588|emb|CBL43787.1| DNA polymerase A [gamma proteobacterium HdN1] Length = 920 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 102/699 (14%), Positives = 187/699 (26%), Gaps = 151/699 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 +D ET S + D ++ +F H Sbjct: 342 DVFSVDTETTSLNYM----------DAELVGISFSLQAGEAAYVPVGHTAIGTPEQLPLD 391 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111 + LK LE + N ++ VL + + R T++ + Sbjct: 392 YVLNALKPILEAETPAKIGQNLKYDMNVLARY-GITLSGVR-FDTMLESYVLD------- 442 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 A + + K L + E + + Y D VT ++ Sbjct: 443 -AAATRHDMDSLAL-KYLGQKTIAFEDVAGKGAKQITFDQVPLLQAATYAAEDADVTLKL 500 Query: 172 FKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E L + + G +DVA ++ + +L+ Sbjct: 501 HQALWPRVQKTPTLTKVFQEIEMPLVGVLSRMEREGARIDVAALKQQSRQLGERMAELEA 560 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 E +L + ++L L+ + L +T + VL + Sbjct: 561 EAHTLAGQP-FNLASPKQLGEILYDQLQLPILKKTPKGAPSTDESVLQDLAHDYELPKVL 619 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L E +N GR+ + A TGR S QN+P + S Sbjct: 620 LEYR-GCAKLKSTYTDKLPELVNPRTGRIHTSYHQAVA-STGRLSSSDPNLQNIPIRNES 677 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + +R IA G +V AD + IE R++A ++ + Sbjct: 678 GRK-------------------------IRQAFIAEPGFTMVAADYSQIELRIMAHLSDD 712 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF G D++ T A V VT D R K + L Y A Sbjct: 713 ESLIDAFARGLDIHRATAAEVMGVPLEDVTSDMRRSAKAVNFGLIYGMSA-----FGLAR 767 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L ++ + + + +++ + + G R Sbjct: 768 QLGISREQAQAYMDRYFHRYPGVLRYMEDIRKQAHDQGYVETLFGR--RLYLPEVRAASK 825 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + + G A KR + + + + Sbjct: 826 MRRQ---AAERVAINAPMQGSAADIIKRAMIDIDTWLRTQPA------------------ 864 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 M+ + VHDE+V E Sbjct: 865 -----------------------------------KIRMI----------MQVHDELVFE 879 Query: 636 TPDTDE-FNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + M+ S +PL E + Sbjct: 880 VPNDVVPDAIEQIQKRMSGAAS--LKVPLIVEAGTGTNW 916 >gi|221068749|ref|ZP_03544854.1| DNA polymerase I [Comamonas testosteroni KF-1] gi|220713772|gb|EED69140.1| DNA polymerase I [Comamonas testosteroni KF-1] Length = 937 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 102/705 (14%), Positives = 199/705 (28%), Gaps = 167/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 +D ET S ++ ++ +F H+ + Sbjct: 364 ALDTETDSLDEMV----------ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLDLDKVL 413 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAV 112 L+ LE+ + + +++ V + + + T++ + P L ++ Sbjct: 414 ARLRPWLEDASRKKLGQHVKYDQHVFANH-GITVRGYA-HDTMLQSYVLEADRPHNLTSL 471 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + E P + Y D T ++ Sbjct: 472 ALRH------------VNRSGISYEDLCGKGKSQIPFAQVPVDKAAAYSCEDSDQTLDVH 519 Query: 173 KRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P + I G +D + + KL++E Sbjct: 520 NTLWPRIQVHAGLLHIYELEMQTSEALFRIERNGVSIDAGELARQSNDLGARILKLEEEA 579 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L F + G+ + T +T + VL + P ++ Sbjct: 580 YEIAGQP-FNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLE 638 Query: 279 NRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R S+ + L + DGR+ A TGR S QN+P + Sbjct: 639 HR-SLSKLKGTYTDKLAQMALPSDGRVHTHYAQAVA-VTGRLSSNDPNLQNIPVRTPEGR 696 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 VR +A EGK + AD + IE R++A ++G++ Sbjct: 697 R-------------------------VREAFVAPEGKLIASADYSQIELRIMAHLSGDEA 731 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF+ G D++ T A F V+ +V+ +QR KV+ G+ Sbjct: 732 LLSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVIN--------------FGLIYGM 777 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A A + Q++ V Sbjct: 778 SSFGL------------------------------AKNLGIETKAAAAYIDKYFQRYPGV 807 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 ++ + + GR LV ++ Sbjct: 808 KRYMDQTVELAH--------------------------AQGYVETVFGRRLVLPEINGGN 841 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631 + R +Q + D++ + M+ K +++ VHDE Sbjct: 842 GPRK---KAAERAAINAP------MQGTAADLIKKAMVAVQARLDAEKPEVLVIMQVHDE 892 Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +V E P+ + + +M +PL AE + K Sbjct: 893 LVFELPEAARDWVQAEIPAIMAGVAD--LSVPLLAEIGFGSSWEK 935 >gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1] gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1] Length = 927 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 113/702 (16%), Positives = 214/702 (30%), Gaps = 155/702 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 + +D ET S +L ++ +F + H Sbjct: 351 DLVALDTETNSLDELR----------AQIVGLSFSVEPGAAAYIPLAHSGPEAPEQLPLD 400 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSAL 109 + + LK LE+ + + ++R V +D+ + T++ + + P L Sbjct: 401 TVLERLKPWLEDASRPKLGQHVKYDRHVFANH-GIDVRGYA-HDTMLQSYVLEVHRPHNL 458 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 ++ E G+ I+ E + P + Y D T Sbjct: 459 ASLAERH--------TGRTGISY----EDLCGKGAKQIPFAQVPVEQAAAYSCEDSDQTL 506 Query: 170 EIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 ++ + L PL + E + I G +D A + + +L+ Sbjct: 507 DVHRVLWPLIEADEKLRAIYALEMESSEVLFRIERNGVLIDTATLQQQSHDLGQRILRLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 QE + + ++L F + GL + T +T + VL + P + Sbjct: 567 QEAYDIAGQP-FNLGSPKQLGEIFFDKLGLPVVKKTATGARSTDEEVLEKLAEDYPLPAK 625 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R S+ + L + + GR+ A TGR S QN+P + Sbjct: 626 ILEHR-SLSKLKGTYTDKLGQLADPRTGRVHTHYAQAVA-VTGRLSSNEPNLQNIPIRTA 683 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 VR +A G+ + AD + IE R++A ++G Sbjct: 684 EGRR-------------------------VREAFVAPPGRVIASADYSQIELRIMAHLSG 718 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L+AF G D++ T A F VA QV+ +QR KV+ L Y Sbjct: 719 DDALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMS-----SFGLA 773 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L ++ A + + + + + + + + G R Sbjct: 774 RNLGIDNKAAAAYIDRYFQRYPGVKQYMDETKASAKARGYVETVFGR---------RLYL 824 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 ++ P+G + Sbjct: 825 PEINS-------------------------------------------PNGPRRGAAERA 841 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + + T L ++ VQ +++A K +++ VHDE+V Sbjct: 842 AINAPMQGTAADLIKKAMVA-------VQ---------AVLDADKPQVLMIMQVHDELVF 885 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E P+ + + LM +PL AE + K Sbjct: 886 ELPEEESGWLRTEVPRLMAGVAE--LKVPLLAEVGMGPNWEK 925 >gi|327537894|gb|EGF24594.1| DNA polymerase I [Rhodopirellula baltica WH47] Length = 975 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 111/704 (15%), Positives = 205/704 (29%), Gaps = 160/704 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--------VMP 54 L ID ET S +A ++ + + ++ Sbjct: 396 VLAIDTETTST----------HARGCDLVGISIAWQPGEAAYIPVRAPDGDPAINELIVI 445 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 + L++ LE++ + V HN F+ VL + + T+V L Sbjct: 446 ETLRDVLESSAIEKVGHNLKFDVIVL-RSAGVQLGGITM-DTMVADYLLNSGGRNHGLDD 503 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + K+LI + + Y DV V + Sbjct: 504 LAQR--RLDHTNLSIKDLI----------GTGKKQITMDQVPVDDVSPYACEDVDVPIRL 551 Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 L E L + + G V+ +++ D + L Sbjct: 552 APTLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSERFDKDIADLRAL 611 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278 + S + ++L LF E GL + T+ +T VLS A V Sbjct: 612 VFSAAGH-EFNLDSPKQLGVVLFEELGLPVIKKTKTGVSTDADVLSQLAVNHEIAEHVLQ 670 Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R A++ ++ L + + GR+ + + A+ TGR S QN+P + + Sbjct: 671 YRQ-ATKLKNTYIDALPQLICDKTGRVHTSFRQDVAA-TGRLSSSEPNLQNIPIRTEQGK 728 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQ 396 +R+ A EG L+ AD + IE RVLA +G++ Sbjct: 729 A-------------------------IRAAFTAGREGWSLLGADYSQIELRVLAHYSGDE 763 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + A+ D++ A + ++VT D R I K + + Y Sbjct: 764 ALIGAYHDDADIHTRVAAEVNGIEESEVTSDLRRIAKTINFGIVYGQSP-----FGLAKT 818 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L ++ + + E F +G R++ Sbjct: 819 LGISNDEARDYIELYFQRYSGVEAFMMDTLARCRNEGYVATMLGR---------RREIKG 869 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V +L LP + + Sbjct: 870 VRDL---------------------------------------AKLPESKRRSLTEP--- 887 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630 R +Q + D++ M+ + ++L +HD Sbjct: 888 -----------ERIAINMP------IQGTAADLIKLAMLRVHEQLKQSDLQARLLLQIHD 930 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E++ E+PD + M+ MTS +PLK + + + Sbjct: 931 ELLLESPDEELDALSDMIREAMTSVME--LDVPLKVDVAHGRTW 972 >gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1] gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1] Length = 922 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 106/698 (15%), Positives = 196/698 (28%), Gaps = 152/698 (21%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + +D ET S + ++ +F + HD Sbjct: 345 IAVDTETTSLDYMV----------AELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFA 394 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAV 112 + L+ LE+ V V N ++ +VL + + T++ + ++ Sbjct: 395 LEKLRPILEDDKVKKVGQNLKYDISVLANA-GIKLQ-GVVFDTMLESYVFNSVASRHDMD 452 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 G ALK K E + ++ + Y D +T + Sbjct: 453 GLALKYLGHKNI----------GFEDIAGKGAKQLTFNQIPLEVAAPYAAEDADITLRLH 502 Query: 173 KRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P E L + I +G +D L + + + L+++ Sbjct: 503 QHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEK 562 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + + ++L+ F + G + T +T + VL P + Sbjct: 563 AYEIAG-EKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVIL 621 Query: 278 NNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R S+ + L +N GR+ + A+ TGR S QN+P + Sbjct: 622 EHR-SLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEG 679 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA G+K++ AD + IE R++A ++ + Sbjct: 680 RR-------------------------IRQAFIAPAGRKILAADYSQIELRIMAHLSQDA 714 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 LKAF G+D++ T A F VT +QR K + L Y A Sbjct: 715 GLLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSA-----FGLARQ 769 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L++ ++ + + + E G + R R Sbjct: 770 LDIPRNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRR 829 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 +A G A K+ + + K + + Sbjct: 830 -----QGAERAAINAPMQGTAADIIKKAMINIAQWIKTETQGEI---------------- 868 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 M+ + VHDE+V E Sbjct: 869 ------------------------------------AMI----------MQVHDELVFEV 882 Query: 637 PDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + LM + L AE + Sbjct: 883 DADKAETLKQKVCELMAKAA--ILDVALLAEAGIGDNW 918 >gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200] Length = 922 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 106/698 (15%), Positives = 196/698 (28%), Gaps = 152/698 (21%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + +D ET S + ++ +F + HD Sbjct: 345 IAVDTETTSLDYMV----------AELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFA 394 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAV 112 + L+ LE+ V V N ++ +VL + + T++ + ++ Sbjct: 395 LEKLRPILEDDKVKKVGQNLKYDISVLANA-GIKLQ-GVVFDTMLESYVFNSVASRHDMD 452 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 G ALK K E + ++ + Y D +T + Sbjct: 453 GLALKYLGHKNI----------GFEDIAGKGAKQLTFNQIPLEVAAPYAAEDADITLRLH 502 Query: 173 KRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P E L + I +G +D L + + + L+++ Sbjct: 503 QHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEK 562 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + + ++L+ F + G + T +T + VL P + Sbjct: 563 AYEIAG-EKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVIL 621 Query: 278 NNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R S+ + L +N GR+ + A+ TGR S QN+P + Sbjct: 622 EHR-SLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEG 679 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA G+K++ AD + IE R++A ++ + Sbjct: 680 RR-------------------------IRQAFIAPAGRKILAADYSQIELRIMAHLSQDA 714 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 LKAF G+D++ T A F VT +QR K + L Y A Sbjct: 715 GLLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSA-----FGLARQ 769 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L++ ++ + + + E G + R R Sbjct: 770 LDIPRNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRR 829 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 +A G A K+ + + K + + Sbjct: 830 -----QGAERAAINAPMQGTAADIIKKAMINIAQWIKTETQGEI---------------- 868 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 M+ + VHDE+V E Sbjct: 869 ------------------------------------AMI----------MQVHDELVFEV 882 Query: 637 PDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + LM + L AE + Sbjct: 883 DADKAETLKQKVCELMAKAA--ILDVALLAEAGIGDNW 918 >gi|254423394|ref|ZP_05037112.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335] gi|196190883|gb|EDX85847.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335] Length = 920 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 108/699 (15%), Positives = 210/699 (30%), Gaps = 147/699 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHD-------PVMPQVL 57 D ET S L + ++ + + P H + L Sbjct: 335 DTETNSIDPL----------EADLVGIGCCWGEGPTALAYIPVGHTAGEQLSMETVLSAL 384 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 K LE+ V N+ ++R VL+ + + ++ + ++ AL+ Sbjct: 385 KPILEDQQYPKVFQNAKYDRLVLRRA-GVSL-TGVVFDPMLASYVLNPENSHNLSDLALR 442 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 +L+ + K A +YC DV T + L+ Sbjct: 443 YLELTTVSYTDLVP-------------KGKTIGEVAIAEVAQYCGSDVHTTYRLVPLLKA 489 Query: 178 LS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E + + + G +D A + ++ ++ + +++ Sbjct: 490 DLQEVPDLATLYTEVELPVEPVLAKMEATGIRIDKAYLNQFSKQLESDLAGIEKAAYDAA 549 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L F + GL + +T L + P V R Sbjct: 550 G-EEFNLGSPKQLSELFFEKLGLDKRKSRKNKTGYSTDAATLEKLQGDHPVVDSVVEYR- 607 Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 S+ ++ L + + GR+ + TGR S QN+P + Sbjct: 608 TLSKLKSTYVDALPALIRPNTGRVHTDFNQAITT-TGRLSSSNPNLQNIPTRTA------ 660 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 S +R + EG +LV AD + IE R+LA ++ E +K Sbjct: 661 -------------------FSRQIRQAFLPKEGWQLVAADYSQIELRILAHLSEEPILIK 701 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 + ED++ T F+ ++T ++R + KV+ + Y GA F ++++ Sbjct: 702 TYREDEDVHRLTATLLFDKDKDEITVEERRMAKVINFGVIYGMGAARF-----AREMDIH 756 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + + + MQ + G + + Sbjct: 757 RLDAKTFIDRFNQRYPNVFEYLQQMQREAIAYGYVKTIAGR------RRYFN-------- 802 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + K + + L S R Sbjct: 803 -----------------------FTTRSLQALKGTDPTKIDLSSLR-------------T 826 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCET 636 N L R +Q S DI+ M+ + +++L VHDE++ E Sbjct: 827 NGYDAGLLRAAANAP------IQGSSADIIKVAMIRLHELLKGYQANMLLQVHDELIFEV 880 Query: 637 PDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 P + + M S A +PLK E K + Sbjct: 881 PPDEWEELQPKIEQTMEDAVSLA--VPLKVEAQAGKNWM 917 >gi|332969120|gb|EGK08156.1| DNA-directed DNA polymerase I [Psychrobacter sp. 1501(2011)] Length = 1018 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 99/744 (13%), Positives = 203/744 (27%), Gaps = 203/744 (27%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------ 49 +D ET S + ++ +F H H Sbjct: 402 KHFAVDTETTS----------IDWREAEIVGLSFSVQAHEAYYVPLAHVDYSEPQKKAKN 451 Query: 50 -------------------------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84 ++ LK LEN ++ + + ++ VL+ Sbjct: 452 KKEEAEQAELVANAEVDPLIAKQLDRDMVLTKLKPILENPEIGKIGQHLKYDAHVLRKY- 510 Query: 85 NLDIP--IHRWI-CTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGET 138 +++ W T++ + ++ + + E Sbjct: 511 GIELNTSPKNWEMDTMLASYVLNAAATRHSMDDLARHYLHTQ------------TISFED 558 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ-----------ELWY 187 + + A + +Y D +T ++F+ + + + Sbjct: 559 VAGKGAKQVTFDKVAINIASDYACEDADITYQLFELFQDRLKDDTVNQRLLHELEIPVAQ 618 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + G + + + L++ D E +L+++ + ++L LF + Sbjct: 619 ILCQMESEGIMIKRSFLNELSERFDEEIIELEKQAYVEAG-EEFNLGSPKQLGEVLFDKL 677 Query: 248 GLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 G+ T++ T + VLS P A R ++ + L + D Sbjct: 678 GVIGGKKTKSGQYSTGEAVLSKI--DHPLAEIALEYR-SLAKLKNTYTDALDAVADKDTD 734 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 T + TGR S QN+P +++ Sbjct: 735 RVHTSYHQALTSTGRLSSTDPNLQNIPIRTKTGR-------------------------L 769 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG+ L+ AD + IE R++A +G+ KAF G D++ T A + + Sbjct: 770 IRQAFIAPEGRVLLAADYSQIELRLMAHFSGDANLTKAFNEGLDIHTATAAEVLGKSVDE 829 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT +R K + G++ A ++ Sbjct: 830 VTPTERRNAKAINF--------------GLLYGMSAFGLAKQLQM--------------- 860 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 + + +++ V + Sbjct: 861 ---------------SRGEAQDYIDQYFKRYPGVRRYMQDTRDNAVD------------- 892 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 + GR L D+ +N + R R Q Sbjct: 893 -------------KGYIETILGRKLYTPDINSNNQMVR---RGAERAAINAPL------Q 930 Query: 604 AVSRDILAEGMMNATK----AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN---- 654 + D++ M+ K ++L VHDE+V E ++ + M + Sbjct: 931 GSAADLIKLAMIAVDKVLPKQNAKMLLQVHDELVFEVDSDKADEIGELIKNAMQNVLSDT 990 Query: 655 ---PSWAKG--LPLKAEGYESKRY 673 W +PL E + Sbjct: 991 AKDMGWDVDFAVPLLVETGVGDNW 1014 >gi|257454649|ref|ZP_05619905.1| DNA polymerase I [Enhydrobacter aerosaccus SK60] gi|257447959|gb|EEV22946.1| DNA polymerase I [Enhydrobacter aerosaccus SK60] Length = 948 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 99/718 (13%), Positives = 195/718 (27%), Gaps = 177/718 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------ 49 ID ET + ++ +F H H Sbjct: 358 KHFVIDTETTDVN----------WQHAELVGLSFALQSHEAYYVPVAHVDEMGNRIEQLT 407 Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP-IHRWI-CTLVLARSNGL-- 105 + LK L+N + + + ++ +L I W T++ + Sbjct: 408 REDVLAQLKPILQNPQIGKIGQHLKYDAHILANYHINLINEPSNWAMDTMLASYVINAVA 467 Query: 106 -PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 + + + E + + + +Y D Sbjct: 468 TRHGMDDLARHYLHTQ------------TITFEDVAGKGAKQITFDKVPLTVASDYACED 515 Query: 165 VTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 +T ++F+ E + + + G ++ A L+ D Sbjct: 516 ADITYQLFELFSEKLKAEPNNAKLLHELEIPVAQILCQMEHDGILLNKAFLGELSARFDE 575 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKL 269 + L+ + + ++L LF G+ T+ +T + VL++ Sbjct: 576 KIQALETVAFAQAG-ETFNLASPKQLGEVLFDRLGITGGKKTKTGQYSTSEAVLATI--D 632 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P V +R S+ + L +S+ R+ + + TGR S QN+ Sbjct: 633 HPLIETVLEHR-SLSKLKSTYTDALANVADSNDRVHTSYHQALTT-TGRLSSTEPNLQNI 690 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P + + +R IA +G+K++ AD + IE R++ Sbjct: 691 PIRTDTGR-------------------------LIRGAFIAPKGRKVLSADYSQIELRLM 725 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A A + ++AF+ G D++ T A A VT ++R K + Sbjct: 726 AHFANDPVLIRAFQEGHDIHRATAAEILGKAFDDVTSEERRQAKAVN------------- 772 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 G++ A F + K Sbjct: 773 -FGLLYGMSEFGLAKQ------------------------------LGFTRQQAQDYIKL 801 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + ++ V A + + GR L Sbjct: 802 YFARYPTVRAYMQATRTAAQN--------------------------QGYITTILGRKLF 835 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDIV 625 D+ + + R Q + DI+ M+ + ++ Sbjct: 836 TPDMQHPNRGVRQA---AERAAINAPL------QGSAADIIKLAMIAVNEVLPTEHAKML 886 Query: 626 LTVHDEIVCETPDTDEFNASM-LYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673 L VHDE+V E + + + + M S W +PL E + Sbjct: 887 LQVHDELVFEADEDKAEAIAELIKNAMQEVLSKTAKDKGWDVDFAVPLVVEVGIGDNW 944 >gi|313669194|ref|YP_004049478.1| DNA polymerase I [Neisseria lactamica ST-640] gi|313006656|emb|CBN88122.1| DNA polymerase I [Neisseria lactamica 020-06] Length = 932 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 106/705 (15%), Positives = 205/705 (29%), Gaps = 164/705 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52 + ID ET S A + + + F H Sbjct: 354 KIGIDTETTSLD----------AMNAAPVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQY 403 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110 + LK LEN + + N +++ V C + + ++ + L Sbjct: 404 VLDRLKPHLENPALKKIGQNLKYDQHVFANC-GIALNGI-VGDAMLASYIIESHLGHGLD 461 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + G+ L E+ + A EY D Sbjct: 462 ELS------------GRWLGLETITYESLCGKGAKQIGFADVAIGPATEYAAQDADFALR 509 Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L E + + + G +D A + + E KL+QE Sbjct: 510 LEAHLRAQMDDKQLEMYEKMELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQE 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAIQ 275 + + ++L+ LF + G+ + L + +T + VL P Sbjct: 570 AYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKI 628 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + NR ++ + L E ++ + T + TGR +G QN+P + Sbjct: 629 ILKNR-SLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVAITGRLAGNNPNLQNIPIRTEE 687 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + VR A G +V AD + IE R++A ++G+ Sbjct: 688 GRK-------------------------VRRAFTAPPGSVIVSADYSQIELRIMAHLSGD 722 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF+ GED++ T A F +AP V+ +QR K + Sbjct: 723 KTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTIN--------------FGLIY 768 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + ++ + + ++ Sbjct: 769 GMGQYGLAKSLGIDNLS------------------------------AKNFIDRYFARYP 798 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V+E + + GR L D+ + Sbjct: 799 GVAEYMQRARECA--------------------------AGQGYVETLFGRRLYLSDIRH 832 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVH 629 + + R +Q + D++ M++ ++ +++ VH Sbjct: 833 TNA---NIRARAERAAINAP------MQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVH 883 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E P+ + L +M + +PL AE + Sbjct: 884 DELVLEVPEAELDLVKEKLPQMMAAVDDGMLDVPLVAEVGAGMNW 928 >gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553] gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553] Length = 905 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 112/703 (15%), Positives = 196/703 (27%), Gaps = 166/703 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VM 53 + +D ET S + ++ + + H + Sbjct: 332 VALDTETTSLDQM----------QARLVGLSLAVEPGVACYIPVAHRGPDGATQLPKAEV 381 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111 LK LE+ + H++ ++ V + + T++ A L Sbjct: 382 LARLKPWLEDASRAKLLHHAKYDAHVFAN-EGIALAGIT-DDTMLQAYVLESHRGVGLND 439 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + L E + A G Y D T ++ Sbjct: 440 LAQRY------------LGRSGISYEDLCGKGAKQIGFDEVAVDKAGHYAAEDADFTLQL 487 Query: 172 FKRLEPL----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 L P+ E ++ + TI G VD + + E +L+Q+ Sbjct: 488 HHVLRPMVAANEGLDRIYQLEIKVSAVLTTIERNGVKVDAEELGRQSHKLGQEMLRLEQK 547 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277 L + ++L LF L + T +T + VL+ P + Sbjct: 548 AYELAGQP-FNLNSPKQLGEILFDRMQLPVVRKTASGAPSTDEDVLTKLALDYPLPQVLL 606 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R S+ + L +N T A TGR + QN+P + + Sbjct: 607 EYR-GLSKLKSTYTDKLPRMINPATGRVHTRYSQAAVITGRLASSDPNLQNIPVRTEAGR 665 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 VR IA +G L+ AD + IE R++A ++ + Sbjct: 666 R-------------------------VREAFIAEQG-MLLSADYSQIELRIMAHVSDDAN 699 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 AF GED++ T A F VA A V+ DQR K + G+ Sbjct: 700 LQSAFAAGEDIHRATAAEVFGVALADVSTDQRRAAKAIN--------------FGLIYGM 745 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A A + + ++ V Sbjct: 746 GVFGL------------------------------ASNLGITRDAAQAYIDRYFARYPGV 775 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + + + GR L ++ R Sbjct: 776 AMYMENTRRLARE--------------------------QGYVETVFGRRLQLPEI---R 806 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631 + R +Q + D++ M+ K +++ VHDE Sbjct: 807 GASGPRRQGAERAAINAP------MQGTAADLIKLAMVAVQDWLEAEKLQTRMIMQVHDE 860 Query: 632 IVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E PD + L LM S +PL AE K + Sbjct: 861 LVLEAPDNEIEVVKEALPRLMCSVAE--LRVPLVAEVGMGKNW 901 >gi|167644193|ref|YP_001681856.1| DNA polymerase I [Caulobacter sp. K31] gi|167346623|gb|ABZ69358.1| DNA polymerase I [Caulobacter sp. K31] Length = 973 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 100/716 (13%), Positives = 194/716 (27%), Gaps = 176/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49 + D ET + + + H Sbjct: 385 IVAFDTETDALSS----------ATAGLCGVSLAISPGEACYIPVGHCEKDGLALEAAAD 434 Query: 50 -----DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ V +A N+ ++ VL I + T++++ Sbjct: 435 LVQVPMEEVIAALKPLLEDPAVLKIAQNAKYDIAVLARY---GINVGPIEDTMLISYVLE 491 Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E + G + I+ + Y Sbjct: 492 AGLHGHGMDELSE--------LWLGHKPISF----KQVAGSGKGQISFKHVGLAEATAYA 539 Query: 162 KGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT ++ L+P ++E + L + + + G VD L+ Sbjct: 540 AEDADVTLRLYNVLKPRLAREGLLTVYETLERPLPAVLAAMENDGIRVDPDTLRRLSNEF 599 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + + + L + +++ LF E L T +T VL + Sbjct: 600 SMRMADFEARAQELVGRP-FNLGSPKQIGDVLFGEMALKGGKKTATGQWSTDSDVLEALA 658 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL-GASRTGRWSGCVFPP 326 + + R S+ L+ A+ G R + A+ TGR S Sbjct: 659 LEHELPRVLLDWRQ-LSKLKGTYTENLIAAIAPGGGNRVHTSYALAATTTGRLSSSDPNL 717 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P + + +R +A+ GK L+ AD + IE Sbjct: 718 QNIPIRTEEGRK-------------------------IRKAFVAAPGKVLISADYSQIEL 752 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA + KAF+ G D++ T + FNV + + R K + Sbjct: 753 RLLAHIGDIPQLKKAFQEGLDIHAMTASEMFNVPIEGMPSEVRRRAKAINF--------- 803 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ A+ + Sbjct: 804 -----GIVYGISAFGLANQLSI------------------------------PQGEAGAY 828 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 K + ++ + + + + GR Sbjct: 829 IKTYFERFPGIQAYMEATKAFVRE--------------------------HGYVTTIFGR 862 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKA 620 + D+G R +Q + D++ M+ Sbjct: 863 KINIPDIGGKSVAHRQF---AERAAINAP------IQGAAADVMRRAMVRMPGALKAAGL 913 Query: 621 GYDIVLTVHDEIVCETPD-TDEFNASMLYHLM--TSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E P+ + + +M + P+ +PL E + + Sbjct: 914 SSRMLLQVHDELVFEAPEAEAQATIDVAREVMQGAAAPAVTISVPLTVEARAAANW 969 >gi|157363023|ref|YP_001469790.1| DNA polymerase I [Thermotoga lettingae TMO] gi|157313627|gb|ABV32726.1| DNA polymerase I [Thermotoga lettingae TMO] Length = 892 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 115/704 (16%), Positives = 216/704 (30%), Gaps = 163/704 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQ 55 +D ET S + D +I F+ H Sbjct: 318 YFVLDLETDSLSPI----------DAEIIGFSISLPSKESYYVPLAHKNGPNVDKKSALN 367 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112 LK LEN I+ N ++ +VLK ++ P+ T++ A L + Sbjct: 368 NLKSILENQSAKIIGQNLKYDYSVLKMH-GIE-PVRPSFDTMIAAYLLNPDEKRFNLDEL 425 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 +K + KM +EL + +Y D +TR ++ Sbjct: 426 A--MKFLNYKMISFEELF-------KDTSPLFGAVTFADVSVEDATKYSAEDADITRRLY 476 Query: 173 KRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L E L + + G +++ L+ +L Q++ Sbjct: 477 EILNIKLHEADLLEVLEKIEMPLIPVLVHMELEGVYMNIDYLKDLSSKYAARMNELSQQI 536 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278 + + +++ LF + + T +T VL + P + Sbjct: 537 YNHAG-EAFNLNSPKQVAHILFDKLKIQPTKKTSTGEPSTRADVLEELSEEHPIVRLILE 595 Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R + + L+ L + ++ + GR+ + G + TGR S QNLP Sbjct: 596 YR-KYQKIKSTYLDVLPKLVHPETGRIHSSFHQTG-TATGRLSSSDPNLQNLPSKQEESR 653 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQ 396 E +R V+ + K++ AD + IE RVLA ++ +Q Sbjct: 654 E-------------------------IRKAVVPQRDSWKILSADYSQIELRVLAHLSNDQ 688 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF+ ED++ T +R F V QVT R+IGK++ ++ Y G Sbjct: 689 NLIEAFKKDEDIHNFTSSRIFQVPENQVTPQMRSIGKMVNFSVIYGVSP---------YG 739 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L+ ++ + + Sbjct: 740 LS-----------------------------------QRTGLSYDQAQKFIGEYFSLYPS 764 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E + ++ + + + GR + + Sbjct: 765 VKEYFAKIVSYAKT--------------------------HGYVRTMFGRRREVPQLRSK 798 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630 + + + R +Q + DI+ M+N + ++L VHD Sbjct: 799 NASVRQ---EGERIAINTP------IQGTAADIMKLAMINLYDKIKQMRLQSKMILQVHD 849 Query: 631 EIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 E+V E PD + L M + +PLK + S + Sbjct: 850 ELVFEVPDEEVEIVKNLVRDSMENVVR--LSVPLKVDLKISDSW 891 >gi|224368350|ref|YP_002602513.1| PolA [Desulfobacterium autotrophicum HRM2] gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2] Length = 891 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 106/708 (14%), Positives = 209/708 (29%), Gaps = 169/708 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51 L +D ET S + ++ +F + H H Sbjct: 313 DILSVDTETTSKHPML----------AKLVGISFAVEPHRAYYIPVGHTGMDAKKQPDLS 362 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SA 108 + +++ LEN +V V N ++ VL + + T++ + + Sbjct: 363 RVIALIRPLLENPEVKKVGQNIKYDYIVLTRH-GIRMQGLG-FDTMIASHLLNPSQRGHS 420 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 L + L + I + + + +Y D +T Sbjct: 421 LDKIAMDL--------LDHKTIRY----KEVTGSGKTQIGFNEVEIQTALDYAAEDADIT 468 Query: 169 REIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 L+ + E L + + G VD L++ + E L Sbjct: 469 LLCHGILKQKLQESNLLDLMNQVEMPLITVLADMEMHGIKVDRKKLGELSKTFEQEMMTL 528 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSSNKKLTPQA 273 + ++ +L + ++L T LF + L + +T VL+ + Sbjct: 529 ETQIYALAG-ETFNINSSQQLGTILFEKLQLPAKKKTKKKTGYSTDVEVLNELAEHHELP 587 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 ++ R + + L E ++ + GR+ + + TGR S QN+P Sbjct: 588 EKILRYR-SLGKLKSTYSDALQELIHPETGRIHTSFNQAI-TATGRLSSSDPNLQNIPIR 645 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + + +R + G LV AD + IE R+LA Sbjct: 646 TNEGK-------------------------MIREAFVPEPGHILVAADYSQIELRLLAHF 680 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 A ++ +++F ED++ T A F P +T+D R K Sbjct: 681 AEDEILIQSFRNDEDIHTRTAAEVFQAFPEFITEDLRRQAKA--------------INFG 726 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ + A E + ++ Sbjct: 727 IMYGMS------------------------------AFKLAKEINVTRKTAQTYIDSYFA 756 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 +++ V ++ + + T E + GR D Sbjct: 757 RYAGVKRFIDKTIEQAKTTGE--------------------------VTTILGRKRRLND 790 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVL 626 + + + R VQ + D++ M+N + ++L Sbjct: 791 INASNV---NLRKLAERAAINTP------VQGSAADLIKLAMINMDRELKKTPLKSRMLL 841 Query: 627 TVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 +VHDEI+ ETP ++ L +M +A +PLK + Sbjct: 842 SVHDEIIFETPLAEKEALMDLARQVMEGV--FALKVPLKVNIAAGINW 887 >gi|325268321|ref|ZP_08134954.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608] gi|324989463|gb|EGC21413.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608] Length = 920 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 97/698 (13%), Positives = 195/698 (27%), Gaps = 159/698 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59 + +D ET S ++ ++ +F +++ D + + K Sbjct: 350 VSLDTETTSTDAIS----------AELVGLSFSVEENRAFYVAIPADRQEATRIVGIFKP 399 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALK 117 EN + + N ++ VL + + + + T++ + + E L Sbjct: 400 LYENEQILKIGQNIKYDYEVLS-HYGVTLQ-GKMFDTMIAHYLIQPELHHNMDYMAETL- 456 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + +EL+ + + + EY D +T + LEP Sbjct: 457 -LGYRTIHIEELLG---------PKGKKQRNMRDLSPTDIYEYAAEDADITLRLKHVLEP 506 Query: 178 LSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E L + + G C+D ++I + +QE+ Sbjct: 507 HLKELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEIYKEAG 566 Query: 228 GLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 + +++ LF + + T+T T + VL S + P + N R Sbjct: 567 -ETFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVVRNILNYR-G 624 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + ++ L + +N T + TGR S QN+P + +E Sbjct: 625 MKKLLSTYIDALPKLINPRTGHIHTSFNQAQTSTGRLSSSDPNLQNIPVRTDDGKE---- 680 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R C I +G AD + IE R++A ++G++ ++AF Sbjct: 681 ---------------------IRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAF 719 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ T A+ ++ +VT QR K G+ Sbjct: 720 REGHDIHRATAAKIWHEDIEKVTDAQRKKAKQAN--------------FGIIYGITTYGL 765 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + + + + +V Sbjct: 766 AQR------------------------------MGIPNSEARELIQDYFHTFPKVKAYME 795 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + + R D+ + + T Sbjct: 796 QAKETAR--------------------------AKGYAETLFHRRRYLPDINSRNA---T 826 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 R +Q DI+ M+ K ++L VHDE+ Sbjct: 827 VRGFAERNAINAP------IQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSV 880 Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M +PL A+ + Sbjct: 881 YPEEREQVERIVIEEMQHACQ--LNVPLTADAGWGSNW 916 >gi|325105539|ref|YP_004275193.1| DNA polymerase I [Pedobacter saltans DSM 12145] gi|324974387|gb|ADY53371.1| DNA polymerase I [Pedobacter saltans DSM 12145] Length = 931 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 100/703 (14%), Positives = 205/703 (29%), Gaps = 164/703 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 + +D ET A D ++ +F + +VL Sbjct: 358 KEVSMDTETTGLD----------ANDAELVGLSFAYKAREAYYIAVPKHEKGILEFLEVL 407 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE- 114 + LEN ++ + N ++ +LK +++ + T++ + + E Sbjct: 408 RPLLENENIRKIGQNLKYDYIILKWY-GIELK-GEFFDTMLAHYLLDPDTRHNMDVLSEN 465 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L + + E +Y D VT ++ + Sbjct: 466 YLGYTPISITEL-------------IGKGKNQLNMRDIDVAKVTDYAAEDADVTLQLQQV 512 Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 EP+ E L + + G +DV ++ + + KL+ + Sbjct: 513 FEPMLIEAQAEKLAKEVENPLINVLGDMEKEGVKIDVEQLIRFSRDLQDDIGKLENTIYH 572 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNN 279 + ++L LF + L + T+T T + VL + + + + Sbjct: 573 KAGHR-FNIASPKQLGEILFDKLQLDPKAKKTKTGQYQTGEDVLLALANKSDIVKDILDF 631 Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R + ++ L +N GR+ + A+ TGR S QN+P + E Sbjct: 632 RQ-LQKLKSTYVDALPLMINKKTGRVHTSYNQAVAA-TGRLSSNNPNLQNIPIRTEKGRE 689 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQW 397 VR I E L+ AD + IE R++A ++ ++ Sbjct: 690 -------------------------VRKAFIPRDENHILLSADYSQIELRIIAEISKDEN 724 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + AF G D++ T A+ + V Sbjct: 725 MMDAFSKGLDIHTATAAKVYGV-------------------------------------- 746 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 A+L S A NF ++ + + + + +++ + Sbjct: 747 -----ANLEDVTSDQRRNAKAVNFGIIYGQSAFGLSQNLGIPRKEAAEIIENYFEQYKGI 801 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 ++ + N + GR RD+ + Sbjct: 802 KNYMSDTMNFARE--------------------------NGYVETIMGRRRYLRDINSAN 835 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631 + T R +Q + D++ M+N K + + VHDE Sbjct: 836 A---TVRGFAERNAINAP------IQGSAADMIKIAMLNIHKDLIDRKLQSKMTMQVHDE 886 Query: 632 IVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 +V + T++ + M + +P+ E E + Sbjct: 887 LVFDVLVTEKDIVKEIIMDRMKNAIKTT--VPIVVEIGEGLNW 927 >gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1] gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1] Length = 893 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 114/703 (16%), Positives = 212/703 (30%), Gaps = 165/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMPQVL 57 ID ET S + + F H + + + L Sbjct: 321 AIDLETSSLDPFEC----------DIAGISLSFKPKEAYYIPLHHRNAQNLDEKEVLKKL 370 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 KE LE+ IV N F+ VL ++ P+ T++ A L + Sbjct: 371 KEILEDPGAKIVGQNLKFDYKVLM-VKGIE-PVPPHFDTMIAAYLIEPNEKKFNLDDLA- 427 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 LK KM +EL++ Y D +T ++K Sbjct: 428 -LKFLGYKMTSYQELMSFSSP--------LFGFSFVDVPLEKAANYSCEDADITYRLYKT 478 Query: 175 LEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L E L + + G VD L++ + +L +E+ Sbjct: 479 LSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYR 538 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL-EDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + +++ LF + G+ T+ +T VL + Sbjct: 539 IAG-EPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEY 597 Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R + + ++ L + +N GR+ + G + TGR S QNLP S +E Sbjct: 598 R-KIQKLKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLPTKSEEGKE 655 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397 +R ++ +V AD + IE R+LA ++G++ Sbjct: 656 -------------------------IRKAIVPQDPNWWIVSADYSQIELRILAHLSGDEN 690 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L+AFE G D++ T +R FNV P +VT++ R A + G+ Sbjct: 691 LLRAFEEGIDVHTLTASRIFNVKPEEVTEEMRR--------------AGKMVNFSIIYGV 736 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + E++ + + +V Sbjct: 737 TPYGLS------------------------------VRLGVPVKEAEKMIVNYFVLYPKV 766 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + ++ + GR + Sbjct: 767 RDYIQRVVSEAKE--------------------------KGYVRTLFGRKRDIPQLMARD 800 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631 T + R +Q + DI+ M+ K +++ VHDE Sbjct: 801 ---RNTQAEGERIAINTP------IQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDE 851 Query: 632 IVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E P+ ++ ++ MT+ +PL+ + K + Sbjct: 852 LVFEVPNEEKDALVELVKDRMTNVVK--LSVPLEVDVTIGKTW 892 >gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4] gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4] Length = 930 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 107/697 (15%), Positives = 200/697 (28%), Gaps = 156/697 (22%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQV 56 D ET S Y E ++ +F + HD + Sbjct: 356 DTETTSLN---------YME-AKMVGLSFAIEPGKAAYLPLAHDYADAPEQLDSEQVLAK 405 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVG 113 LK LE+ + V N ++ ++L + + T++ + + + Sbjct: 406 LKPLLEDPSLLKVGQNLKYDMSILAN-VGIALKGVA-FDTMLESYVFNSVASKHNMDDLA 463 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 G + I+ E + ++ Y D +T + + Sbjct: 464 LKY--------LGHKNISF----EEIAGKGVKQLTFNQIPLETAAPYAAEDADITLRLHQ 511 Query: 174 RLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E L + I +G +D L + + + +L+Q+ Sbjct: 512 HLWPRLQKASELASVFTDIELPLVSILSQIERQGVLIDSMLLGQQSDELARKIDELEQKA 571 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ F + G + T +T + VL P + Sbjct: 572 YEIAG-EPFNLGSTKQLQALFFEKLGYPVLKKTPKGAPSTAEEVLVELALDYPLPKIILE 630 Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R S+ + L ++ GR+ + A+ TGR S QN+P + Sbjct: 631 HR-SLSKLKSTYTDKLPLMVDGKTGRVHTSYHQAIAA-TGRLSSSEPNLQNIPIRTEEGR 688 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R +A EG+K++ AD + IE R++A ++ ++ Sbjct: 689 R-------------------------IRHAFVAPEGRKILAADYSQIELRIMAHLSQDKG 723 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF G+D++ T A F+V ++VT +QR K + L Y A L Sbjct: 724 LLSAFAEGKDIHRATAAEVFDVDFSEVTSEQRRRAKAVNFGLIYGMSA-----FGLARQL 778 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 ++ + + + + + E G R R Sbjct: 779 DIPRHEAQQYIDIYFKRYPGVLKYMEDTRAAAAEQGYVSTLYGRRLYLPAIKDRNAMRR- 837 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +A G A K+ Sbjct: 838 ----QAAERAAINAPMQGTAADIIKK---------------------------------- 859 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 + E Q +I M+ + VHDE+V E Sbjct: 860 ------------AMINIAQWIETETQG---EIT---MI----------MQVHDELVFEVD 891 Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + LM S + L AE + Sbjct: 892 ADKADSLKLKVCELMAQAAS--LDVELLAEAGIGDNW 926 >gi|319407881|emb|CBI81533.1| DNA polymerase I [Bartonella schoenbuchensis R1] Length = 968 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 100/715 (13%), Positives = 208/715 (29%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---------- 52 + ET S + +I F+ H Sbjct: 380 YFAFNIETTSLNPI----------QAKIIGFSLALQPEKAAYIPLEHTEEGCDLLGGGCV 429 Query: 53 --------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + +LK LE+ V + +N + ++K I + ++++ + Sbjct: 430 VTQIETQKVLALLKPILEDQAVLKIGYNMKYNWLIMKQYA---IVTQPFDDIMLISYALD 486 Query: 105 ---LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + E K K+L + + + Y Sbjct: 487 AGTSTHNRDILSER--WLKHKPIAYKDLTHN----------GKKITSFAQVDLKQATFYA 534 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 +T +++ L+P ++ L + + +RG VD + L+ + Sbjct: 535 AEGADITLRLWQVLKPQLVAQGVTKIYERLDRPLIEVLAKMEERGILVDRQILSRLSCEL 594 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 L++E+ L + ++L LF + GL T+ +T ++L Sbjct: 595 AQAALSLEEEIYQLVG-ERFNIASPKQLSDILFGKMGLPGGVKTKNGQWSTSAQILEELA 653 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L + + T L + TGR S Q Sbjct: 654 AEGHTLPRKIVDWRQLTKLKSTYTDALPYYILPETGRVHTNYSLATTSTGRLSSSEPNLQ 713 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA +G L+ AD + IE R Sbjct: 714 NIPIRTPEGRK-------------------------IRTAFIAPKGCVLLSADYSQIELR 748 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA +A +AF +D++ T ++ F VA + D R K + Sbjct: 749 ILAHIANITALKEAFAQDQDIHAITASQIFGVAVEGMPSDIRRRAKAINF---------- 798 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A+ + R Sbjct: 799 ----GIIYGISAFGLANQLSI------------------------------SRNEASRYI 824 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + ++ + + Q + + GR Sbjct: 825 DIYFERFPGIKDYMETTKSFARQ--------------------------HGYVETIFGRR 858 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAG 621 + Y ++ S R +Q + DI+ M+ K Sbjct: 859 IHYPEIKATNS---QIRTFNERAAINAP------IQGSAADIIRRAMIQMEGALKKEKLS 909 Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+T+ +L +M + P+ + +PLK + ++ + Sbjct: 910 AKMLLQVHDELIFEVPETESEKTKVLVTKVMENAAMPALSLSVPLKVKVAAAQNW 964 >gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32] gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32] Length = 922 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 103/697 (14%), Positives = 196/697 (28%), Gaps = 150/697 (21%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + +D ET S + ++ +F + HD Sbjct: 345 IAVDTETTSLDYMV----------AELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFA 394 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + L+ LE+ V V N ++ +VL + + T++ + ++ Sbjct: 395 LEKLRPILEDDKVKKVGQNLKYDISVLANA-GIKLQ-GVVFDTMLESYVFNSVAS----- 447 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + K L + E + ++ + Y D +T + + Sbjct: 448 ---RHDMDGL-AIKYLGHKNIGFEDIAGKGAKQLTFNQIPLEVAAPYAAEDADITLRLHQ 503 Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E L + I +G +D L + + + L+++ Sbjct: 504 HLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKA 563 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ F + G + T +T + VL P + Sbjct: 564 YEIAG-EKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILE 622 Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R S+ + L +N GR+ + A+ TGR S QN+P + Sbjct: 623 HR-SLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEGR 680 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R IA G+K++ AD + IE R++A ++ + Sbjct: 681 R-------------------------IRQAFIAPAGRKILAADYSQIELRIMAHLSQDAG 715 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 LKAF G+D++ T A F VT +QR K + L Y A L Sbjct: 716 LLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSA-----FGLARQL 770 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 ++ ++ + + + E G + R R Sbjct: 771 DIPRNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRR- 829 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +A G A K+ + + K + + Sbjct: 830 ----QGAERAAINAPMQGTAADIIKKAMINIAQWIKTETQGEI----------------- 868 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 M+ + VHDE+V E Sbjct: 869 -----------------------------------AMI----------MQVHDELVFEVD 883 Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + LM + L AE + Sbjct: 884 ADKAETLKQKVCELMAKAA--ILDVALLAEAGIGDNW 918 >gi|319403494|emb|CBI77073.1| DNA polymerase I [Bartonella rochalimae ATCC BAA-1498] Length = 968 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 98/715 (13%), Positives = 211/715 (29%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49 D +T S + ++ F+ H Sbjct: 380 YFSFDTKTISLDPM----------QAKLVGFSLALQPGKAAYVPLEHVAEEENLLGGGRI 429 Query: 50 -----DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN- 103 +LK LEN V + N ++ V+K +I + + T++L+ + Sbjct: 430 VPQIETQKALALLKPILENQAVLKIGQNIKYDWLVMKQY---NIVMCSFDDTMLLSYALE 486 Query: 104 --GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + + G + I+ + + + + Y Sbjct: 487 AGISTHGMDVLSKRW--------LGHKPISY----KDLTHSGRKIVSFAQVDLKQATLYA 534 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D +T +++ L+P ++ L + + +RG VD + L+ + Sbjct: 535 AEDADITLRLWQVLKPQLVAQKMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGEL 594 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL----HLEDLTETTCQRVLSSNK 267 L++E+ L + ++L LF + GL + +T + L Sbjct: 595 AQAALNLEEEIYQLVG-EKFNIASPKQLGDILFGKMGLLGGAKTKSGQWSTSAQTLEELA 653 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L + T L + TGR S Q Sbjct: 654 AEGHILPRKIIDWRQLTKLKSTYTDALPSYILPTTGRVHTNYSLATTLTGRLSSSEPNLQ 713 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R +AS+G L+ AD + IE R Sbjct: 714 NIPVRTAEGRK-------------------------IRKAFVASKGYLLLSADYSQIELR 748 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA +A +AF G+D++ T ++ F VA +T + R K + Sbjct: 749 ILAHVADITALKEAFTKGQDIHTMTASQMFGVAVEGMTSEIRRRAKAINF---------- 798 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A Sbjct: 799 ----GIIYGISPFGLASQ------------------------------LGISRKEASDYI 824 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + + + +G GR Sbjct: 825 QLYFERFPGIEDYM---ERTKIFARHHGYVETI-----------------------FGRR 858 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 + Y ++ + + R +Q + DI+ M+ A Sbjct: 859 IHYPEIK---TAKSQIRAFNERAAINAP------IQGSAADIIRRAMIQMENALEKERLS 909 Query: 622 YDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P ++ A ++ +M + P+ + +PL+ + ++ + Sbjct: 910 AKMLLQVHDELIFEVPKSESTKTAILIKKVMENATMPALSLSVPLEVKVIAAQNW 964 >gi|299532523|ref|ZP_07045913.1| DNA polymerase I [Comamonas testosteroni S44] gi|298719470|gb|EFI60437.1| DNA polymerase I [Comamonas testosteroni S44] Length = 937 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 103/705 (14%), Positives = 202/705 (28%), Gaps = 167/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 +D ET S ++ ++ +F H+ ++ Sbjct: 364 ALDTETDSLDEMV----------ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLDMDMVL 413 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAV 112 LK LE+ + + +++ V + + + T++ + P L ++ Sbjct: 414 ARLKPWLEDAGKKKLGQHVKYDQHVFANH-GITVRGYA-HDTMLQSYVLEADRPHNLTSL 471 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + E P + + Y D T ++ Sbjct: 472 ALRH------------VSRSGISYEDLCGKGKNQIPFAQVSVDKAAAYSCEDSDQTLDVH 519 Query: 173 KRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P + I G +D + + KL++E Sbjct: 520 NTLWPRIQAHAGLLHIYELEMQTSEALFRIERNGVSIDAGELARQSNDLGARILKLEEEA 579 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L F + G+ + T +T + VL + P ++ Sbjct: 580 YEIAGQP-FNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLE 638 Query: 279 NRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R S+ + L + DGR+ A TGR S QN+P + Sbjct: 639 HR-SLSKLKGTYTDKLAQMALPSDGRVHTHYAQAVA-VTGRLSSNDPNLQNIPVRTPEGR 696 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 VR +A EGK + AD + IE R++A ++G++ Sbjct: 697 R-------------------------VREAFVAPEGKLIASADYSQIELRIMAHLSGDEA 731 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF+ G D++ T A F V+ +V+ +QR KV+ G+ Sbjct: 732 LLSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVIN--------------FGLIYGM 777 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A A + Q++ V Sbjct: 778 SSFGL------------------------------AKNLGIETKAAAAYIDKYFQRYPGV 807 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 ++ + + GR LV ++ Sbjct: 808 KRYMDQTVELAH--------------------------AQGYVETVFGRRLVLPEINGGN 841 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631 + R +Q + D++ + M+ K +++ VHDE Sbjct: 842 GPRK---KAAERAAINAP------MQGTAADLIKKAMVAVQARLDTEKPEVLVIMQVHDE 892 Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +V E P++ + + +M +PL AE + K Sbjct: 893 LVFELPESARDWVQAEIPAIMAGVAD--LSVPLLAEIGFGSSWEK 935 >gi|213963385|ref|ZP_03391641.1| DNA polymerase type I [Capnocytophaga sputigena Capno] gi|213954053|gb|EEB65379.1| DNA polymerase type I [Capnocytophaga sputigena Capno] Length = 928 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 94/700 (13%), Positives = 202/700 (28%), Gaps = 161/700 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58 + D ET + L + ++ +F + H + + + + Sbjct: 357 EVCFDTETTNVDAL----------EAELVGISFCWAAHKGHYLPFPKEKEAATKLIEQFR 406 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 EN + V N ++ VL+ +++ T++ + + E Sbjct: 407 PFFENEQIAKVGQNLKYDLKVLQNY-GVEVQ-GALFDTMIAHYLLNPDMRHNMDILSETY 464 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + LI + EY D VT ++ + Sbjct: 465 --LNYTPIAIESLI----------GKGKAQRSMRTVPIDEVKEYAVEDADVTWQLKNVFQ 512 Query: 177 PLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + L + + G +DV ++ +D + +L+ + Sbjct: 513 SQMPQVNAQKIYTDLEAPLIKVLAAMEREGVNLDVDFLKEYSKTLDADIAQLETAIAQQA 572 Query: 227 YGLVSSSRCLEKLKTWLFLETGLH-LEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L LF + + T+T T + VL+ + Sbjct: 573 G-ETFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFAAKHKIVADIL-EWR 630 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + ++ L +N T + TGR S QN+P + Sbjct: 631 QVQKLKSTYVDALPLEVNKSTGRVHTTYMQTVAATGRLSSNNPNLQNIPIRTPRG----- 685 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 VR IA L+ AD + IE R++A ++ E ++ Sbjct: 686 --------------------QQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIE 725 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 +F GED++ T A+ FNV +VT++QR+ K + + G++ Sbjct: 726 SFLHGEDIHRATAAKVFNVPLEEVTREQRSHAKTVNFGII--------------YGVSAF 771 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + + + + Sbjct: 772 GLSAQTD------------------------------LSRSESKELIDTYYATYPNLRNY 801 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 N + + + + GR D+ ++ + Sbjct: 802 INRQIEFARE--------------------------HGYVETILGRRRYLPDIHSHNQVV 835 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVC 634 + +Q + DI+ M+ K ++L VHDE+V Sbjct: 836 RGGAERN---------AVNAPIQGSAADIIKIAMIRIHNQLQAQKLQTRMLLQVHDELVF 886 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + P T+ ++ M + + A +PL A+ + Sbjct: 887 DVPKTELELVKPLIKDAMENAFTLA--VPLVADLGVGNNW 924 >gi|322417979|ref|YP_004197202.1| DNA polymerase I [Geobacter sp. M18] gi|320124366|gb|ADW11926.1| DNA polymerase I [Geobacter sp. M18] Length = 892 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 115/705 (16%), Positives = 195/705 (27%), Gaps = 169/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-VMPQVLKEAL-- 61 ID ET S L D ++ +A H H P+ L EAL Sbjct: 317 AIDLETTSLNPL----------DASIVGYAVSCLAHEAYYIPIGHRYLGAPEQLPEALVL 366 Query: 62 -------ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111 + D + N ++ VL+ +++ W T++ A L A Sbjct: 367 ELLGPLLTDPDRKKIGQNLKYDYQVLQQ-SGVELAGI-WCDTMLAAYLVNPSRNSQGLDA 424 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + +I+ G Y D T + Sbjct: 425 LALEY--------LDHRMISY----AEVAGTGKCELNFSEVDLDRAGPYSCEDADATYLL 472 Query: 172 FKRLEPL----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P E L + + G +DV L L+ + +L+ + Sbjct: 473 HEILLPKVREQGMEGLLFDVEMPLMKILADMELCGVKLDVELMKELSTGFGRQLIELEAK 532 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQV 276 + G + ++L LF GL + T+ +T L + A + Sbjct: 533 IHEHCGGS-FNINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEVARLL 591 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R S+ + L ++ GR+ + + TGR S QN+P Sbjct: 592 LQYR-SISKLKSTYTDALPRLVDPKTGRVHTSYNQAI-TNTGRLSSSDPNLQNIPVRGEE 649 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA G ++ AD + IE RVLA ++G+ Sbjct: 650 GRG-------------------------IRRAFIAEPGSLILSADYSQIELRVLAHLSGD 684 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + +AF GED++ T A F + P VT + R Sbjct: 685 RVLCEAFAAGEDIHRRTAAEVFGMFPELVTAEMRRQA----------------------- 721 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 NF + A E + + + ++HS Sbjct: 722 ---------------------KVINFGVIYGQGAFSLAKELGVAPKQAKAFIENYFERHS 760 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + E + GR L ++ + Sbjct: 761 GARSFLDRCIAEAETC--------------------------GFVTTILGRRLQIPEIAS 794 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 R T +Q + DI+ M+ K +++ VH Sbjct: 795 KN---GNARAFAQRNAT------NYPIQGSAADIIKAAMIRVTRRMLEEKVASRLIMQVH 845 Query: 630 DEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E P + L M +PLK + + Sbjct: 846 DELVFEVPRNERELMEDLVRAEMEGALP--LSVPLKVDLNFGLNW 888 >gi|260591949|ref|ZP_05857407.1| DNA polymerase type I [Prevotella veroralis F0319] gi|260536233|gb|EEX18850.1| DNA polymerase type I [Prevotella veroralis F0319] Length = 920 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 98/698 (14%), Positives = 186/698 (26%), Gaps = 155/698 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV-HDPVMPQV---L 57 TL +D ET S ++ ++ +F ++ + + Sbjct: 348 KTLSLDTETTSTDAIS----------AELVGLSFSVEEKEAYYVPIPENREEALKRVAIF 397 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 K EN + V N ++ VL + + T++ L+ Sbjct: 398 KPVYENESILKVGQNIKYDYEVLSNY-GVKLK-GAMFDTMIAHYLIQP---------ELR 446 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + M E E + K + EY D +T + L P Sbjct: 447 HNMDYMAETLLGYQTIHIEELLGSKGKKQKNMRDLSPTDIYEYAAEDADITLRLKNVLAP 506 Query: 178 LSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E L + + G +D ++I + + ++ Sbjct: 507 KLKELNVEELFWSIEMPLVRVLADMELTGVRIDTEALKETSKIFTERMRQYEVKIFKEAG 566 Query: 228 GLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 + +++ LF + L T+T T + VL S + P + N R Sbjct: 567 -EEFNISSPKQVGDILFGKMQILDKPKKTKTGQYVTSEEVLQSIESKHPIVRNILNYR-G 624 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + + L + +NS T + TGR S QN+P + +E Sbjct: 625 MKKLLSTYVEALPKLINSRTGHIHTSFNQALTATGRLSSSDPNLQNIPVRTDDGKE---- 680 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R C I EG AD + IE R++A ++ + ++AF Sbjct: 681 ---------------------IRKCFIPEEGCMFFSADYSQIELRIMAHLSEDDNMMEAF 719 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ T A+ ++ A VT QR K G+ Sbjct: 720 REGYDIHRATAAKIWHEALDDVTDAQRKKAKQAN--------------FGIIYGITTFGL 765 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A ++ + + + + +V Sbjct: 766 AQRMEI------------------------------PNNEARALIQDYFRTFPKVQAYME 795 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + R ++ + T Sbjct: 796 HAKELARS--------------------------KGYAETLFHRRRYLPNINSRN---GT 826 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 R +Q DI+ M+ ++L VHDE+ Sbjct: 827 IRGFDERNAINAP------IQGTEADIIKVAMVRIWNRFKEEGIRSKMILQVHDELNFSV 880 Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + + +PL A+ K + Sbjct: 881 YPDEREKVEKIVLEEMQNA--YPLNVPLIADAGWGKNW 916 >gi|309702940|emb|CBJ02271.1| putative phage DNA polymerase [Escherichia coli ETEC H10407] Length = 598 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 221/589 (37%), Positives = 321/589 (54%), Gaps = 24/589 (4%) Query: 104 GLPSALKAVGEALKLSSQK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEY 160 G AL + E L + K +EGK LI FCK R H E WR F Y Sbjct: 16 GSGGALGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAY 75 Query: 161 CKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 D+ RE++KRL + + EL W+ DQ INDRG C+DV LA VD E+ +L Sbjct: 76 AGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRL 135 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + +T G V ++ + L + G+ L D+ +T +R ++ L ++ Sbjct: 136 AKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLA 194 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R++AS ++ K L++ ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E+ Sbjct: 195 IRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQ 254 Query: 339 LDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +D+ I L + +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+ Sbjct: 255 IDEGIEALKAGCADLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEE 314 Query: 397 WKLKAFETG-----EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 WKL AF DLY YA++F++AP V K R IGKVMEL LGY GG AF Sbjct: 315 WKLNAFREYDAGTGPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITF 374 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A GL+L+ A+ N + +A+++ + + + + AC+ +K+ WR Sbjct: 375 ALVYGLDLDGLANAALPNIPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWR 433 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + H + W EL I + + + +++D L + LPSGR++ Y Sbjct: 434 RAHPATCDFWYELECTVRTAIATPQKTL-----YCGYLKIRRDGAWLRIQLPSGRAVCYP 488 Query: 572 DV---GNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 N +Y+ N+ +R+ R TYGGKL EN+ QA +RD+LA M AGY IVL Sbjct: 489 SPVIEQGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVL 548 Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 TVHDE++ E+PDT++FN L L+++NP WA +PL A G+E+ YRK Sbjct: 549 TVHDEVITESPDTEDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 597 >gi|264677057|ref|YP_003276963.1| DNA polymerase I [Comamonas testosteroni CNB-2] gi|262207569|gb|ACY31667.1| DNA polymerase I [Comamonas testosteroni CNB-2] Length = 931 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 103/705 (14%), Positives = 201/705 (28%), Gaps = 167/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 +D ET S ++ ++ +F H+ ++ Sbjct: 358 ALDTETDSLDEMV----------ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLNMDMVL 407 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAV 112 LK LE+ + + +++ V + + + T++ + P L ++ Sbjct: 408 ARLKPWLEDAGKKKLGQHVKYDQHVFANH-GITVRGYA-HDTMLQSYVLEADRPHNLTSL 465 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + E P + + Y D T ++ Sbjct: 466 ALRH------------VSRSGISYEDLCGKGKNQIPFAQVSVDKAAAYSCEDSDQTLDVH 513 Query: 173 KRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P + I G +D + + KL++E Sbjct: 514 NTLWPRIQAHAGLLHIYELEMQTSEALFRIERNGVSIDAGELARQSNDLGARILKLEEEA 573 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L F + G+ + T +T + VL + P ++ Sbjct: 574 YEIAGQP-FNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLE 632 Query: 279 NRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R S+ + L + DGR+ A TGR S QN+P + Sbjct: 633 HR-SLSKLKGTYTDKLAQMALPSDGRVHTHYAQAVA-VTGRLSSNDPNLQNIPVRTPEGR 690 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 VR +A EGK + AD + IE R++A ++G++ Sbjct: 691 R-------------------------VREAFVAPEGKLIASADYSQIELRIMAHLSGDEA 725 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF+ G D++ T A F V+ +V+ +QR KV+ G+ Sbjct: 726 LLSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVIN--------------FGLIYGM 771 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A A + Q++ V Sbjct: 772 SSFGL------------------------------AKNLGIETKAAAAYIDKYFQRYPGV 801 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 ++ + + GR LV ++ Sbjct: 802 KRYMDQTVELAH--------------------------AQGYVETVFGRRLVLPEINGGN 835 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631 + R +Q + D++ + M+ K +++ VHDE Sbjct: 836 GPRK---KAAERAAINAP------MQGTAADLIKKAMVAVQARLDAEKPEVLVIMQVHDE 886 Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +V E P+ + + +M +PL AE + K Sbjct: 887 LVFELPEAARDWVQAEIPSIMAGVAD--LSVPLLAEIGFGSSWEK 929 >gi|329847238|ref|ZP_08262266.1| DNA polymerase I [Asticcacaulis biprosthecum C19] gi|328842301|gb|EGF91870.1| DNA polymerase I [Asticcacaulis biprosthecum C19] Length = 959 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 109/721 (15%), Positives = 216/721 (29%), Gaps = 180/721 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET DL+ A + + D + H Sbjct: 365 VIAVDTET---DDLS-------ATHAKLCGISLSTDTNCACYIPLGHLASDGLDFGGGDD 414 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 +LK LEN ++ V N ++ +VLK I + + T++++ Sbjct: 415 LKQIPLDQAIALLKPVLENRNILKVGQNIKYDLSVLKRY---GIDVAPYDDTMLMSYVVE 471 Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + + + G I + K A + +Y Sbjct: 472 GGLHGHGMDELSQ--------LHLGHTPIPF----KQVAGSGKTLKSFKFVALKEATQYA 519 Query: 162 KGDVTVTREIFKRLEPLSSKEQE----------LWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT ++ L+P +++ + + G VD + L+Q Sbjct: 520 AEDADVTLRLWHVLKPRLVRDRLNTVYETLERGMPKALSEMELNGIRVDPQVLRNLSQDF 579 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK 267 ++QE + + ++L F E L T + T +VL Sbjct: 580 GTRMNAIEQEAHAHLGRP-FNLNSPQQLGVVFFDEMKLPGGKRTASGQWATDVKVLEDIA 638 Query: 268 K------LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 + ++ + + ++ + LVE + + T L ++ TGR + Sbjct: 639 EGKNGTGAGQTLAKLLLDYRQMAKLKGTYTDALVEYADPQTQRIHTSFHLASTTTGRLAS 698 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 QN+P + + +R+ IA G KL+ AD Sbjct: 699 NEPNLQNIPIRTGEGRK-------------------------IRTAFIAKPGCKLISADY 733 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R+LA + + KAF G+D++ T + F V A +T + R K + Sbjct: 734 SQIELRLLAHIGDIEQLKKAFSDGQDIHAMTASEMFGVPMADMTSEIRRRAKAINF---- 789 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 G++ A+ + + Sbjct: 790 ----------GIIYGISGFGLANQLGIDQG------------------------------ 809 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 R K + ++ + + + Q N + Sbjct: 810 EASRYIKTYFERFPGIKDYMDATKQFLRD--------------------------NGFVQ 843 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----A 617 GR + ++ + R +Q + DI+ MM Sbjct: 844 TLMGRKIHIPEINGKGGAIK---AFAERAAINAP------IQGTAADIIRRAMMRMQPRL 894 Query: 618 TKAGY--DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKR 672 AG+ ++L VHDE++ E P+ + ++ +M + P+ +PL E + Sbjct: 895 DAAGFTTRMLLQVHDELIFEAPEAEVAAVIPLIQEVMQNAALPAVQISVPLVVEAKAANN 954 Query: 673 Y 673 + Sbjct: 955 W 955 >gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae bacterium] Length = 894 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 104/704 (14%), Positives = 201/704 (28%), Gaps = 166/704 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVLKEAL 61 +D ET S + V+ + + H +P+ L L Sbjct: 320 IFALDLETTSLNPV----------QAHVVGISLSCEAGVACYIPLAHRYFGVPEQLDLDL 369 Query: 62 EN---------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SAL 109 + V N ++ VLK+ +++ + T++ + + Sbjct: 370 VLKKLKPLLEDPKLKKVGQNIKYDLIVLKS-EGVNL-VGVAFDTMLASYILNPSGRRHNM 427 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + L K + + + L EY D +T Sbjct: 428 NDMARDY------------LGYTTTKYKEVVGTASKEIGFDKVDIELATEYAAEDADITW 475 Query: 170 EIFKRLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +++ L PL E L + + G +D + L+Q++ + + Sbjct: 476 RLYENLSPLLQGDDFKLLQELELPLIEVLAEMELHGMKLDKSHLQKLSQLIQQKLEDQQK 535 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277 E+ SL + ++L LF + L + T+ +T VL V Sbjct: 536 EIYSLAG-EEFNINSPKQLSVILFEKLELPVIKKTKNGYSTDVSVLEQLAAEHELPDVVL 594 Query: 278 NNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R + + L E + N+ GR+ + A+ TGR S QN+P + Sbjct: 595 TYRQ-LVKLKSTYADALQEDIFNNTGRVHTSFNQTVAA-TGRLSSSNPNLQNIPIRTEMG 652 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 E +R +A L+ AD + +E RVLA ++ ++ Sbjct: 653 RE-------------------------IRKAFVAEGNNHLLSADYSQVELRVLAHLSEDE 687 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF+ GED++ T F P ++ + R + K + G Sbjct: 688 ALVDAFQMGEDIHTRTACEIFGTTPERLDAEARRMAKAVNF--------------GIVYG 733 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L+ + +K ++ + + + Sbjct: 734 LSAFGLSKQLKIY------------------------------PKDAKKFIDQYFALYKK 763 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + R D+ + Sbjct: 764 VKVYMVETVAQAKE--------------------------VGYTLTLMNRRRYLPDLKSQ 797 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630 R VQ + D++ M+ K ++L VHD Sbjct: 798 N---RQVRESAERIAINSP------VQGSAADLIKLAMIRLAEQIRTKKLKSRMILQVHD 848 Query: 631 EIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E P+ +E L M +PL + + + Sbjct: 849 ELVFECPEDEEQEMRALVTKEMEEVMP--LKVPLIVDIGWGENW 890 >gi|326573955|gb|EGE23905.1| DNA polymerase I [Moraxella catarrhalis O35E] Length = 959 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 105/716 (14%), Positives = 210/716 (29%), Gaps = 178/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 ID ET + ++ + D+ H Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106 + K LEN ++ + + ++ + K ++I + T++ + Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + A+ + L + E + + A +Y D Sbjct: 481 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDAD 528 Query: 167 VTREIFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 +T +F R ++++ + + G +D L+ D + Sbjct: 529 ITFRLFNRFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 588 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271 L E E + + ++L LF + G+ T+T T + VLS P Sbjct: 589 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 645 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 V +R S+ +TL A + GR+ + + TGR S QN+P Sbjct: 646 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 703 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + + +R IA +G+ ++ AD + IE R++A Sbjct: 704 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 738 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +G++ ++AF D++ T A ++VT +R K + L Sbjct: 739 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLL----------- 787 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ A ++ + A + K + Sbjct: 788 ---YGMSAFGLAKQIEVDRAV------------------------------AQDYIKRYF 814 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ + E +Q + GR L Sbjct: 815 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 848 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627 D+ ++ + R Q + +I+ M+ K ++L Sbjct: 849 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 899 Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673 VHDE+V E D +++ M + + WA +PL E + + Sbjct: 900 VHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955 >gi|187921421|ref|YP_001890453.1| DNA polymerase I [Burkholderia phytofirmans PsJN] gi|187719859|gb|ACD21082.1| DNA polymerase I [Burkholderia phytofirmans PsJN] Length = 913 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 111/701 (15%), Positives = 202/701 (28%), Gaps = 162/701 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +T ++ + + H + Sbjct: 339 SFDTETTSLDPMT----------AQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVL 388 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ + V + ++ VL +++ TL+ + Sbjct: 389 ARLKPWLESAEHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVVESHRTHDMDSL 446 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E A EY D +T + + Sbjct: 447 ALRHLGVKTI----------KYEEVAGKGAGQIGFDEVALDKAAEYAAEDADITLRLHQA 496 Query: 175 LEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P + E + + + G +D + + +L+ E Sbjct: 497 LYPQVTAEKTLEYVYRAIELPTSRVLRKMERTGVLIDAEKLRLQSSEIATRLIQLESEAY 556 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + T + T + VL + P + + Sbjct: 557 VLAGG-EFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKILLEH 615 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N+ T + TGR + QN+P + Sbjct: 616 R-GLSKLKSTYTDKLPRMVNATTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRR- 673 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA G KLV AD + IE R++A ++G++ L Sbjct: 674 ------------------------IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLL 709 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F+V P +V+ DQR + KV+ G++ Sbjct: 710 RAFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINF--------------GLIYGMSS 755 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A A + + ++ V+ Sbjct: 756 FGLAA------------------------------NLGITRDAAKLYIDRYFARYPGVAR 785 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 +E + + + GR L ++ Sbjct: 786 YMDETRVSAK--------------------------AKGYVETVFGRRLWLPEINGGNGP 819 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 R +Q + D++ M+ K G +++ VHDE++ Sbjct: 820 RRQA---AERAAINAP------MQGTAADLIKLSMIAVQNWIEESKIGTRMIMQVHDELI 870 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E PD + + L LM +PL AE + Sbjct: 871 LEVPDAELSDVRKRLPELMCGVAD--LKVPLVAEVGAGLNW 909 >gi|188993608|ref|YP_001905618.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. B100] gi|167735368|emb|CAP53582.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. campestris] Length = 927 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 97/705 (13%), Positives = 191/705 (27%), Gaps = 169/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S L +I + + HD Sbjct: 352 AFDTETDSLDAL----------QANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQAL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 L L + V + + ++ V++ + + + TL+ + + + Sbjct: 402 AQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GIALAGYA-DDTLLESFVLNSGSARHDMDS 459 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + G + + E + + + Y D +T + Sbjct: 460 LAKRY--------LGYDTVKY----EDICGKGAKQIKFAQVSLEDATRYAAEDADITLRL 507 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E L + + I G CVD A + + Q Sbjct: 508 HQVLGKRLAAEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQSADLSKRMLAAQQ 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF E L +T + L + + Sbjct: 568 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 626 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R ++ + L E ++ GR+ + GA+ TGR S QN+P + Sbjct: 627 LDYR-SLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 684 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G+KL+ D + IE R++A ++G+ Sbjct: 685 GRR-------------------------IRRAFVAPAGRKLIACDYSQIELRIMAHLSGD 719 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+G D++ T A F V+ D+R K + Sbjct: 720 PGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------GLMY 765 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + + ++ Sbjct: 766 GMS------------------------------AFGLARQLGIGRGEAQDYIALYFSRYP 795 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + Q + GR L + Sbjct: 796 GVRDFMETTRQQARD--------------------------KGYVETVFGRRLYLDFI-- 827 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 + R +Q + DI+ M++ ++L VH Sbjct: 828 -NAGSQGQRAGAERAAINAP------MQGTAADIIKRAMVSVDGWIADHAQRALMILQVH 880 Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + + M++ S +PL + + Sbjct: 881 DELVFEADADFVDTLLAEVTARMSAAAS--LRVPLVVDSGVGDNW 923 >gi|300727538|ref|ZP_07060929.1| DNA polymerase type I [Prevotella bryantii B14] gi|299775241|gb|EFI71842.1| DNA polymerase type I [Prevotella bryantii B14] Length = 920 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 100/700 (14%), Positives = 200/700 (28%), Gaps = 159/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 L +D ET S + D ++ +F +++ + + + Sbjct: 348 KNLSLDTETTSTNAI----------DAELVGLSFAVEENKAFYVAIPAEREKALRIVNIF 397 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115 K EN + + N ++ VL +++I + T++ + + E Sbjct: 398 KPLYENKKILKIGQNIKYDYEVLLNY-DIEIK-GKMFDTMIAHYLIQPELHHNMDYLAEV 455 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + +ELI K + EY D +T + L Sbjct: 456 --FLNYQTIHIEELIG---------PKGKNQKNMRDLNPKDVYEYAAEDADITLRLKNVL 504 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 EP E L + + G C+D +++ K ++++ Sbjct: 505 EPKLGEVKAEHLFWEIEMPLIPVLADMERNGICLDTNALQETSKVFTERMRKYEEKIYEE 564 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL S + P + N R Sbjct: 565 AA-EKFNISSPKQVGDILFGKMHIMEKPKKTKTGQYVTSEEVLQSIRAKNPIVENILNYR 623 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L +N T + TGR S QN+P + +E Sbjct: 624 -GMKKLLSTYVDNLPTLINKRTGHIHTSFNQALTATGRLSSSDPNLQNIPVRTDDGKE-- 680 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R C I G AD + IE R++A ++G++ ++ Sbjct: 681 -----------------------IRKCFIPEPGCLFFSADYSQIELRIMAHLSGDENMIE 717 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ T A+ ++ +VT QR K G+ Sbjct: 718 AFREGFDIHRATAAKIWHEEIDKVTDSQRKKAKQAN--------------FGIIYGITTY 763 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A + + + + + +V Sbjct: 764 GLAQR------------------------------MNISNSEAKDLITDYFKTFPKVQAY 793 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + +A + N GR D+ ++ Sbjct: 794 MEKAKEAARK--------------------------NGYAETIFGRRRYLADINSHN--- 824 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 T R +Q DI+ M+ ++L VHDE+ Sbjct: 825 GTVRGFAERNAINAP------IQGSEADIIKVAMIKIWNRFRQEGIKSKMILQVHDELNF 878 Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + M + + +PL A+ + Sbjct: 879 SVYPEEKEKVEQIVIQEMQNA--FHLDVPLTADAGWGNNW 916 >gi|326572008|gb|EGE22010.1| DNA polymerase I [Moraxella catarrhalis BC8] Length = 956 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 106/716 (14%), Positives = 210/716 (29%), Gaps = 178/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 ID ET + ++ + D+ H Sbjct: 370 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 419 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106 + K LEN ++ + + ++ + K ++I + T++ + Sbjct: 420 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 477 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + A+ + L + E + + A +Y D Sbjct: 478 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDAD 525 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVER 215 +T +F R ++++ L + G +D L+ D + Sbjct: 526 ITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 585 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271 L E E + + ++L LF + G+ T+T T + VLS P Sbjct: 586 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 642 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 V +R S+ +TL A + GR+ + + TGR S QN+P Sbjct: 643 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 700 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + + +R IA +G+ ++ AD + IE R++A Sbjct: 701 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 735 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +G++ ++AF D++ T A ++VT +R K + L Sbjct: 736 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLL----------- 784 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ A ++ + A + K + Sbjct: 785 ---YGMSAFGLAKQIEVDRAV------------------------------AQDYIKRYF 811 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ + E +Q + GR L Sbjct: 812 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 845 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627 D+ ++ + R Q + +I+ M+ K ++L Sbjct: 846 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 896 Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673 VHDE+V E D +++ M + + WA +PL E + + Sbjct: 897 VHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 952 >gi|254248787|ref|ZP_04942107.1| DNA polymerase A [Burkholderia cenocepacia PC184] gi|124875288|gb|EAY65278.1| DNA polymerase A [Burkholderia cenocepacia PC184] Length = 920 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 111/702 (15%), Positives = 201/702 (28%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + H + Sbjct: 346 AFDTETTALDPML----------ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVL 395 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113 LK LE+ D V + ++ VL DI ++ TL+ + Sbjct: 396 ARLKPWLESADRKKVGQHLKYDAQVLANY---DIALNGIEHDTLLESYVVESHRTHDMDS 452 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ K K E + A EY D +T ++ Sbjct: 453 LALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITLQLHH 502 Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E + + + + G +D A H + + +L+ E Sbjct: 503 ALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIELEGEA 562 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + +++ F + L + T + T + VL + P + Sbjct: 563 YELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLE 621 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R S+ + L +N T + TGR + QN+P + Sbjct: 622 HR-GLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR 680 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IAS G ++V AD + IE R++A ++G+ Sbjct: 681 -------------------------IREAFIASPGHRIVSADYSQIELRIMAHISGDASL 715 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF GED++ T A F V P +V DQR I KV+ G++ Sbjct: 716 LRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIYGMS 761 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A A + + ++ V+ Sbjct: 762 ------------------------------AFGLASNLGITRDAAKLYIDRYFARYPGVA 791 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + ++ + GR L ++ Sbjct: 792 QYMEDTRATAKE--------------------------KGYVETVFGRRLWLPEINGGNG 825 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 R +Q + D++ M+ + +++ VHDE+ Sbjct: 826 PRRQA---AERAAINAP------MQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDEL 876 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E P+ + L +M +PL AE + Sbjct: 877 VLEVPEGELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 916 >gi|326565599|gb|EGE15762.1| DNA polymerase I [Moraxella catarrhalis 12P80B1] Length = 959 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 106/716 (14%), Positives = 210/716 (29%), Gaps = 178/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 ID ET + ++ + D+ H Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106 + K LEN ++ + + ++ + K ++I + T++ + Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + A+ + L + E + + A +Y D Sbjct: 481 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDAD 528 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVER 215 +T +F R ++++ L + G +D L+ D + Sbjct: 529 ITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 588 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271 L E E + + ++L LF + G+ T+T T + VLS P Sbjct: 589 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 645 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 V +R S+ +TL A + GR+ + + TGR S QN+P Sbjct: 646 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 703 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + + +R IA +G+ ++ AD + IE R++A Sbjct: 704 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 738 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +G++ ++AF D++ T A ++VT +R K + L Sbjct: 739 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLL----------- 787 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ A ++ + A + K + Sbjct: 788 ---YGMSAFGLAKQIEVDRAV------------------------------AQDYIKRYF 814 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ + E +Q + GR L Sbjct: 815 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 848 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627 D+ ++ + R Q + +I+ M+ K ++L Sbjct: 849 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 899 Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673 VHDE+V E D +++ M + + WA +PL E + + Sbjct: 900 VHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955 >gi|326562218|gb|EGE12546.1| DNA polymerase I [Moraxella catarrhalis 7169] Length = 956 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 106/716 (14%), Positives = 210/716 (29%), Gaps = 178/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 ID ET + ++ + D+ H Sbjct: 370 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 419 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106 + K LEN ++ + + ++ + K ++I + T++ + Sbjct: 420 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 477 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + A+ + L + E + + A +Y D Sbjct: 478 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDAD 525 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVER 215 +T +F R ++++ L + G +D L+ D + Sbjct: 526 ITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 585 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271 L E E + + ++L LF + G+ T+T T + VLS P Sbjct: 586 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 642 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 V +R S+ +TL A + GR+ + + TGR S QN+P Sbjct: 643 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 700 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + + +R IA +G+ ++ AD + IE R++A Sbjct: 701 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 735 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +G++ ++AF D++ T A ++VT +R K + L Sbjct: 736 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLL----------- 784 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ A ++ + A + K + Sbjct: 785 ---YGMSAFGLAKQIEVDRAV------------------------------AQDYIKRYF 811 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ + E +Q + GR L Sbjct: 812 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 845 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627 D+ ++ + R Q + +I+ M+ K ++L Sbjct: 846 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 896 Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673 VHDE+V E D +++ M + + WA +PL E + + Sbjct: 897 VHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 952 >gi|326560574|gb|EGE10955.1| DNA polymerase I [Moraxella catarrhalis 103P14B1] Length = 959 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 105/716 (14%), Positives = 209/716 (29%), Gaps = 178/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 ID ET + ++ + D+ H Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106 + K LEN ++ + + ++ + K ++I + T++ + Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + A+ + L + E + + A +Y D Sbjct: 481 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDAD 528 Query: 167 VTREIFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 +T +F R ++++ + + G +D L+ D + Sbjct: 529 ITFRLFNRFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 588 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271 L E E + + ++L LF + G+ T+T T + VLS P Sbjct: 589 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 645 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 V +R S+ +TL A + GR+ + + TGR S QN+P Sbjct: 646 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 703 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + + +R IA +G+ ++ AD + IE R++A Sbjct: 704 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 738 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +G++ ++AF D++ T A ++VT +R K + L Sbjct: 739 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLL----------- 787 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ A ++ + A + K + Sbjct: 788 ---YGMSAFGLAKQIEVDRAV------------------------------AQDYIKRYF 814 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ + E +Q + GR L Sbjct: 815 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 848 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627 D+ ++ + R Q + +I+ M+ K ++L Sbjct: 849 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 899 Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673 VHDE+V E N ++ M + + WA +PL E + + Sbjct: 900 VHDELVFEVDTDKAHNIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955 >gi|285016940|ref|YP_003374651.1| DNA polymeraseIprotein [Xanthomonas albilineans GPE PC73] gi|283472158|emb|CBA14665.1| probable dna polymeraseIprotein [Xanthomonas albilineans] Length = 922 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 100/705 (14%), Positives = 199/705 (28%), Gaps = 169/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVLKEA--- 60 D ET + + ++ +F + + HD P L Sbjct: 347 AFDTETDALDAMR----------ANLVGLSFAIEPGHADYLPLGHDYPGAPVQLDRVQAL 396 Query: 61 ------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111 LE+ V + ++ VL+ + + + T++ + ++ + + Sbjct: 397 AALAPLLEDPAKRKVGQHGKYDLHVLRRH-GVQVHGYA-DDTMLESFVLNSTASRHDMDS 454 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + G + + E + + A Y D +T + Sbjct: 455 LAKRY--------LGYDTVKY----EDVAGKGAKQIAFSQVAIDDATGYAAEDADITLRL 502 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E L + I G CVD+A +Q++ Q Sbjct: 503 HRALSAQLDAEPALARVYREIEMPLVPVLTRIEANGVCVDIAELRKQSQVLSQRMLAAQQ 562 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + +L + ++L+ LF E L +T + L + + Sbjct: 563 KAVALAG-RSFNLDSPKQLQAVLFDELKLPALLKTPKGQPSTNEEALEAIADQHELPRVI 621 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L E +N + GR+ + GA+ TGR S QN+P + Sbjct: 622 LEYR-GLAKLRSTYTDKLPEMVNPETGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 679 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G+KL+ D + IE R++A ++ + Sbjct: 680 GRR-------------------------IRRAFVAPPGRKLIACDYSQIELRIMAHLSED 714 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L+AF G D++ T A F QV+ ++R K + Sbjct: 715 PGLLRAFSQGVDVHRATAAEVFGRTLEQVSANERRAAKAINF--------------GLMY 760 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + ++ Sbjct: 761 GMS------------------------------AFGLARNLGIGRGEAQDYVALYFSRYP 790 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + + + + GR L D+ Sbjct: 791 AVRDFMERMREQART--------------------------QGYVETLFGRRLYLNDINA 824 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 + L R +Q + DI+ M++ +A ++L VH Sbjct: 825 KQQGLR---AGAERAAINAP------MQGTAADIIKRAMVSVDTWLQDHRARALMILQVH 875 Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + M + +PL + + Sbjct: 876 DELVFEVDADFVEILLPEVTWRMAAAAE--LKVPLVVDSGVGDNW 918 >gi|296113895|ref|YP_003627833.1| DNA polymerase I [Moraxella catarrhalis RH4] gi|295921589|gb|ADG61940.1| DNA polymerase I [Moraxella catarrhalis RH4] Length = 959 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 106/716 (14%), Positives = 210/716 (29%), Gaps = 178/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 ID ET + ++ + D+ H Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106 + K LEN ++ + + ++ + K ++I + T++ + Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + A+ + L + E + + A +Y D Sbjct: 481 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDAD 528 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVER 215 +T +F R ++++ L + G +D L+ D + Sbjct: 529 ITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 588 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271 L E E + + ++L LF + G+ T+T T + VLS P Sbjct: 589 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 645 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 V +R S+ +TL A + GR+ + + TGR S QN+P Sbjct: 646 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 703 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + + +R IA +G+ ++ AD + IE R++A Sbjct: 704 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 738 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +G++ ++AF D++ T A ++VT +R K + L Sbjct: 739 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLL----------- 787 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ A ++ + A + K + Sbjct: 788 ---YGMSAFGLAKQIEVDRAV------------------------------AQDYIKRYF 814 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ + E +Q + GR L Sbjct: 815 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 848 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627 D+ ++ + R Q + +I+ M+ K ++L Sbjct: 849 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 899 Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673 VHDE+V E D +++ M + + WA +PL E + + Sbjct: 900 VHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955 >gi|332878784|ref|ZP_08446499.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683135|gb|EGJ56017.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 929 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 103/700 (14%), Positives = 202/700 (28%), Gaps = 161/700 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58 + D ET A + ++ +F + H D + L+ Sbjct: 358 EVCFDTETT----------AIDALEAELVGISFCWTAHKGYYVPFPVDKEEATALLNTLR 407 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 EN +T V N ++ VL+ + + T++ + + E Sbjct: 408 PFFENEKITKVGQNLKYDLKVLQNY-GIKVQ-GALFDTMIAHYLINPDMRHNMDLLSETY 465 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + LI + A EY D VT ++ + Sbjct: 466 --LGYTPIAIESLI----------GKGKAQRSMRTVALEEVKEYAVEDADVTWQLKDVFK 513 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + + G +DVA ++ +D E +L+ + Sbjct: 514 AELPKVNAQKVYADLEMPLLKVLAVMEREGVTLDVAYLKEYSKTLDAEIAQLEATIAEQA 573 Query: 227 YGLVSSSRCLEKLKTWLFLETGLH-LEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L LF + + T+T T + VL+ + Sbjct: 574 GTP-FNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFAAKHKIVADIL-EWR 631 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + ++ L +N T + TGR S QN+P + Sbjct: 632 QVQKLKSTYVDALPLEVNPRTGRVHTTYMQTVAATGRLSSNNPNLQNIPIRTERG----- 686 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 VR IA + L+ AD + IE R++A ++ E ++ Sbjct: 687 --------------------QRVRKAFIARNDDYILLSADYSQIELRIIAALSEEHNMIE 726 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 +F GED++ T A+ FNV VT++QR+ K + + Y G++ Sbjct: 727 SFLHGEDIHRATAAKVFNVPLEAVTREQRSHAKTVNFGIIY--------------GVSAF 772 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + + + + Sbjct: 773 GLSAQTD------------------------------LSRSQSKELIDTYYATYPNLRNY 802 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + E+G GR D+ + + Sbjct: 803 ---IQKQIHFAQEHGYVETVL-----------------------GRRRYLPDIHSRNQVV 836 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 + +Q + DI+ M+ ++L VHDE+V Sbjct: 837 RGAAERN---------AVNAPIQGSAADIIKIAMIRIYDLLQAQQLQTRMLLQVHDELVF 887 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + P T+ ++ +M S + A +PL A+ + Sbjct: 888 DVPKTELEIVKPLIKEVMESAFTLA--VPLVADLGVGNNW 925 >gi|326567172|gb|EGE17294.1| DNA polymerase I [Moraxella catarrhalis BC1] Length = 959 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 106/716 (14%), Positives = 210/716 (29%), Gaps = 178/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 ID ET + ++ + D+ H Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106 + K LEN ++ + + ++ + K ++I + T++ + Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + A+ + L + E + + A +Y D Sbjct: 481 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDAD 528 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVER 215 +T +F R ++++ L + G +D L+ D + Sbjct: 529 ITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 588 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271 L E E + + ++L LF + G+ T+T T + VLS P Sbjct: 589 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 645 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 V +R S+ +TL A + GR+ + + TGR S QN+P Sbjct: 646 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 703 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + + +R IA +G+ ++ AD + IE R++A Sbjct: 704 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 738 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +G++ ++AF D++ T A ++VT +R K + L Sbjct: 739 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLL----------- 787 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ A ++ + A + K + Sbjct: 788 ---YGMSAFGLAKQIEVDRAV------------------------------AQDYIKRYF 814 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ + E +Q + GR L Sbjct: 815 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 848 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627 D+ ++ + R Q + +I+ M+ K ++L Sbjct: 849 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 899 Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673 VHDE+V E D +++ M + + WA +PL E + + Sbjct: 900 VHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955 >gi|119899889|ref|YP_935102.1| DNA polymerase I [Azoarcus sp. BH72] gi|119672302|emb|CAL96216.1| DNA polymerase I [Azoarcus sp. BH72] Length = 918 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 108/706 (15%), Positives = 197/706 (27%), Gaps = 170/706 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + D ET S ++ ++ +F H + Sbjct: 343 VAFDTETTSLDPMS----------ARLVGMSFALAQGEAAYLPLAHRGTDVPQQLPLDEV 392 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSN--GLPSALK 110 LK LE+ + N ++ VL I + TL+ + P + Sbjct: 393 LARLKPWLESDRHAKLGQNLKYDAHVLLNH---GIRLGGITHDTLLESYVLESDKPHDMD 449 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 ++ + G I + A Y D VT Sbjct: 450 SLAKRH--------LGLTTIPY----TEVCGKGAKQIGFDEVALDCAAAYAAEDADVTLR 497 Query: 171 IFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L P E + + G +D L + + L+ Sbjct: 498 LHETLWPQVEALPRLAALYRDVELPTLQVLFEMERTGVLIDPFLLAQHGEELGRRLLGLE 557 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQ 275 E L + ++L LF + L + T +T + VL+ + P Sbjct: 558 AEAHVLAGQP-FNLGSPKQLGEILFGKLALPVLKKTATGQPSTDEDVLTQLAEDYPLPKL 616 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R ++ + L +N GR+ A TGR + QN+P + Sbjct: 617 LLEHR-SLAKLKSTYADKLPRMVNPKTGRVHTCFSQATA-VTGRLASTDPNLQNIPIRTA 674 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R+ IA +V AD + IE R++A ++G Sbjct: 675 EGRR-------------------------IRAAFIAPRDHVIVSADYSQIELRIMAHLSG 709 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L+AF GED++ T A F VAP++V+ +QR Sbjct: 710 DARLLEAFAEGEDVHRATAAEVFGVAPSEVSSEQRRYA--------------KVINFGLI 755 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ A A + + ++ Sbjct: 756 YGMS------------------------------AHGLAKNLGIERGAAQAWIDRYFARY 785 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V++ + + + GR L D+ Sbjct: 786 PGVADYMERIKAEAKD--------------------------KGYVETVFGRRLHLPDIR 819 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628 ++ R +Q + D++ + M+ + +VL V Sbjct: 820 AQQAGRRQA---AERAAINAP------MQGTAADLIKKAMIAVSGWLRASGLKSRLVLQV 870 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E P + + L LM A +PL E + Sbjct: 871 HDELVLEVPVAEVETLRAALPGLMGGVA--ALSVPLLVEVGVGNNW 914 >gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770406|ref|YP_245168.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004] gi|21115286|gb|AAM43241.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575738|gb|AAY51148.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004] Length = 927 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 97/705 (13%), Positives = 191/705 (27%), Gaps = 169/705 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S L +I + + HD Sbjct: 352 AFDTETDSLDAL----------QANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQAL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 L L + V + + ++ V++ + + + TL+ + + + Sbjct: 402 AQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GIALAGYA-DDTLLESFVLNSGSARHDMDS 459 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + G + + E + + + Y D +T + Sbjct: 460 LAKRY--------LGYDTVKY----EDICGKGAKQIKFAQVSLEDATRYAAEDADITLRL 507 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E L + + I G CVD A + + Q Sbjct: 508 HQVLGKRLAAEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQSADLSKRMLAAQQ 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF E L +T + L + + Sbjct: 568 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 626 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R ++ + L E ++ GR+ + GA+ TGR S QN+P + Sbjct: 627 LDYR-SLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 684 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G+KL+ D + IE R++A ++G+ Sbjct: 685 GRR-------------------------IRRAFVAPAGRKLIACDYSQIELRIMAHLSGD 719 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+G D++ T A F V+ D+R K + Sbjct: 720 PGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------GLMY 765 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + + ++ Sbjct: 766 GMS------------------------------AFGLARQLGIGRGEAQDYIALYFSRYP 795 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + Q + GR L + Sbjct: 796 GVRDFMETTRQQARD--------------------------KGYVETVFGRRLYLDFI-- 827 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 + R +Q + DI+ M++ ++L VH Sbjct: 828 -NAGSQGQRAGAERAAINAP------MQGTAADIIKRAMVSVDGWIADHAQRALMILQVH 880 Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E + + M++ S +PL + + Sbjct: 881 DELVFEADADFVDTLLAEVTARMSAAAS--LRVPLVVDSGVGDNW 923 >gi|307546592|ref|YP_003899071.1| DNA polymerase I [Halomonas elongata DSM 2581] gi|307218616|emb|CBV43886.1| DNA polymerase I [Halomonas elongata DSM 2581] Length = 922 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 104/697 (14%), Positives = 201/697 (28%), Gaps = 153/697 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S Y E ++ + HD + Sbjct: 347 CFDLETTSL---------SYME-ADIVGVGLALEPGEAAYIPLAHDYLDAPEQLDRQAVL 396 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113 + L + + N ++ +VL ++ T++ + + Sbjct: 397 EALAPLWADAGKAKIGQNLKYDISVLARH-GHEVA-GPLHDTMLESYVLDSTATRHDMDS 454 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 ALK +K ++ + ++ A Y DV +T + + Sbjct: 455 LALKYLGEKTVSFED----------IAGKGAKQLTFNQIALEQAAPYACEDVDITLRLHR 504 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P + + L + + G +D H ++ + +L+Q Sbjct: 505 ELRPRVEGQGRLAEVLDNLERPLVRVLSRMERNGVALDPERLHEQSRELGERIRELEQRA 564 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 L + ++L LF E + + T +T + VL P + Sbjct: 565 HELAG-REFNLGSPKQLGEILFEEQKIPVIKKTPKGAPSTAEAVLEELALDYPLPKVIME 623 Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R S+ + L + ++ GRL + + TGR S QN+P + Sbjct: 624 HR-GFSKLRSTYTDKLPKLVDPTTGRLHTSYHQAV-TATGRLSSSDPNLQNIPIRTEQGR 681 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R +A G +LV AD + IE R++A ++G++ Sbjct: 682 R-------------------------IRQAFVARPGYRLVAADYSQIELRIMAHLSGDKG 716 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF G D++ T A F VA +V+ +QR K + L Y A L Sbjct: 717 LLDAFAQGRDIHAATAAEVFGVALDKVSGEQRRSAKAINFGLIYGMSA-----WGLGRQL 771 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 ++ + + + + + ++ E + G + + ++ R Sbjct: 772 HIERNQAQIYIDRYFDRYPGVARYMERIRAQAAEDGYVETVFGRRLHLPEIHSQNRNRR- 830 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + G A KR + + D Sbjct: 831 ----QGAERTAINAPMQGTAADIIKRAMIDVDGWLADG---------------------- 864 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 DI + M +V+ VHDE+V E Sbjct: 865 ------------------------------DI--DAM---------MVMQVHDELVFEVA 883 Query: 638 DTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++ + M + + L E + Sbjct: 884 ESEVDAFMDQVKTRMENAAE--LDVALTVEAESGANW 918 >gi|326574946|gb|EGE24876.1| DNA polymerase I [Moraxella catarrhalis 101P30B1] Length = 959 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 106/716 (14%), Positives = 210/716 (29%), Gaps = 178/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 ID ET + ++ + D+ H Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106 + K LEN ++ + + ++ + K ++I + T++ + Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + A+ + L + E + + A + Y D Sbjct: 481 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDVASHYACEDAD 528 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVER 215 +T +F R ++++ L + G +D L+ D + Sbjct: 529 ITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 588 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271 L E E + + ++L LF + G+ T+T T + VLS P Sbjct: 589 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 645 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 V +R S+ +TL A + GR+ + + TGR S QN+P Sbjct: 646 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 703 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + + +R IA +G+ ++ AD + IE R++A Sbjct: 704 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 738 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +G++ ++AF D++ T A ++VT +R K + L Sbjct: 739 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLL----------- 787 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ A ++ + A + K + Sbjct: 788 ---YGMSAFGLAKQIEVDRAV------------------------------AQDYIKRYF 814 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ + E +Q + GR L Sbjct: 815 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 848 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627 D+ ++ + R Q + +I+ M+ K ++L Sbjct: 849 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 899 Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673 VHDE+V E D +++ M + + WA +PL E + + Sbjct: 900 VHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955 >gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910] gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910] Length = 944 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 111/700 (15%), Positives = 218/700 (31%), Gaps = 159/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 + D ET S +L + ++ +F + D ++ Sbjct: 372 KVVCFDTETTSLNEL----------EAELVGMSFSYKKGLAYYIPLSEDRAEVLQTLEIF 421 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 + E D+ VAHN F+ VLK ++ + T++ + + E Sbjct: 422 RPFFEKEDLLKVAHNLKFDYKVLKQY-DITVK-GAMFDTMIAHYLLNPDGRHGMDYLSEV 479 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + K + +I + + R +Y D VT ++++ Sbjct: 480 Y--LNYKPVSIETIIGK---------KGKKQGNFRDADLRTQTDYAAEDADVTFQLYELF 528 Query: 176 EPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P E L + + G +D + ++ + L+ ++ L Sbjct: 529 APQLKKENLEELFYNIEMPLMEVLAKMELSGISLDEKWLAQESVDLENDLKGLEAKIFEL 588 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + + +L LF + L + T+T T + VL + R Sbjct: 589 SG-EEFNMNSPRQLGEILFEKMQLDPKAKKTKTGQYATSEDVLQKLSSKHEIIKHILEYR 647 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L ++ D T + TGR + QN+P + Sbjct: 648 -TYQKLKSTYVDALPSQIDKDDNRVHTNFSQTTAATGRLASVNPNLQNIPIRTLRG---- 702 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R ++ EGKK++ AD + IE R++A ++GE+ +K Sbjct: 703 ---------------------QQIRGAFVSGEGKKIISADYSQIELRLIAEISGEENMIK 741 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ GED++ +T A+ F + A+V+K QR+ K + G Sbjct: 742 AFQDGEDIHASTAAKLFKIPLAEVSKTQRSQAKTVN--------------FGIIYG---- 783 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + A + T +++ +A+ + + ++ E Sbjct: 784 --------------------------QGAFALAEQTGLSRTEAKQMIEAYFETYPKLKEY 817 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 E Q + GR +D+ +N + Sbjct: 818 MAEQVNKARQ--------------------------LGYVETILGRKRHLKDINSNNFVV 851 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 + VQ + DI+ M+ + ++L VHDE+V Sbjct: 852 RGHAERN---------AVNAPVQGSAADIVKIAMIKIDRELEEQQLKTKMLLQVHDELVF 902 Query: 635 ETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 E P + +AS L M + +PL E + Sbjct: 903 EAPADEIESASHLIRTEMENALK--TQVPLLVEIGVGDNW 940 >gi|238024946|ref|YP_002909178.1| DNA polymerase I [Burkholderia glumae BGR1] gi|237879611|gb|ACR31943.1| DNA polymerase I [Burkholderia glumae BGR1] Length = 917 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 112/703 (15%), Positives = 207/703 (29%), Gaps = 166/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ + + H + Sbjct: 343 SFDTETTSLDPMV----------AQIVGLSLCTEPGSAAYVPVAHRGPDAPEQLPRDEVL 392 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113 LK LEN V + ++ VL DI ++ TL+ + Sbjct: 393 AKLKPWLENPARKKVGQHLKYDAQVLANY---DIALNGVEHDTLLESYVLESHRTHDMDS 449 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ K K E + A + Y D +T ++ + Sbjct: 450 LALRHLGVKTI----------KYEDVAGKGAQQIGFDEVALDVAAAYAAEDADITLQLHR 499 Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + P + E + ++ + + G +D ++ + V +L++E Sbjct: 500 VMYPQVEREAGLKRVYTEIELPVSFVLRKMERTGVLIDSGRLEAQSREIAVRLVELEREA 559 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 +L G + +++ F + L + T + T + VL + P + Sbjct: 560 YALAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLE 618 Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R S+ + L +N S GR+ A TGR + QN+P + Sbjct: 619 HR-GLSKLKSTYTDKLPRMINASTGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTAEGR 676 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R IA+ G K+V AD + IE R++A ++G++ Sbjct: 677 R-------------------------IREAFIAAPGCKIVSADYSQIELRIMAHISGDES 711 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L+AF GED++ T A F V P +V+ DQR I KV+ G+ Sbjct: 712 LLRAFSQGEDIHRATAAEVFGVTPLEVSTDQRRIAKVINF--------------GLIYGM 757 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A A + + ++ V Sbjct: 758 S------------------------------AFGLASNLGITRDAAKLYIDRYFARYPGV 787 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + + + GR L ++ Sbjct: 788 ANYMETTRASAK--------------------------AQGYVETVFGRRLWLPEINGGN 821 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDE 631 R +Q + D++ M+ +++ VHDE Sbjct: 822 GPRRQA---AERAAINAP------MQGTAADLIKLSMIAVDGWLERDGLRSRMIMQVHDE 872 Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E PD + L +M+ +PL AE + Sbjct: 873 LVLEVPDAELALVREKLPEMMSGVAK--LKVPLVAEVGAGTNW 913 >gi|269837619|ref|YP_003319847.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745] gi|269786882|gb|ACZ39025.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745] Length = 915 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 120/708 (16%), Positives = 210/708 (29%), Gaps = 170/708 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMPQ 55 + +D ET S +T ++ A H + + Sbjct: 334 IALDVETTSTDPMT----------ARLVGIALATSGQRSFYVPVNHANDDEQLDADEVRE 383 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 L L + + + AH+ ++ VL+ T++ A G + L A Sbjct: 384 ALSPLLADPNTVVYAHHGKYDALVLERAG--YPRPRIAFDTMIAAYLLGENA-LDLKSLA 440 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 +M E LI + G+Y DV T + + L Sbjct: 441 FNRLGMEMTEITTLI----------GRGRNQLTMDLTDVQAAGDYACADVEATYRLVEVL 490 Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P +Q L + + G VDV L L++ + + +L++E+ L Sbjct: 491 QPDLEAQQQERLFREIEMPLIDVLIDMEKVGIAVDVDLLRDLSRQLTGQLAELEREIYGL 550 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMR 282 + +L T LF E GL T+ + Q VL + + P + R Sbjct: 551 AKH-EFNINSTRQLATVLFDELGLPAGRRTKTGYSVSQEVLENLRHAHPIVDCILEYRQL 609 Query: 283 ASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ L E +N + GR+ + A+ TGR S QN+P + Sbjct: 610 L-KLKSTYVDALPEQVNPETGRIHTSFNQTIAA-TGRLSSTDPNLQNIPVRTELGR---- 663 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIA--SEGK-------KLVVADLAGIEARVLAWM 392 VR IA G L+ AD + IE R++A + Sbjct: 664 ---------------------SVRRAFIADNRPGYRPFDEEAVLLSADYSQIELRLMAHL 702 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ + AF G+D++ T A F V QVT D R + K + Sbjct: 703 SGDERLVHAFREGQDIHAATAADVFGVPLEQVTPDMRRVAKTVN--------------FG 748 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ A + +R + Sbjct: 749 IMYGM------------------------------QAYGLARDTGMSRQDAQRFIDRYMA 778 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + V L + Q ++ G GR D Sbjct: 779 RLPGVRAF---LERTKRQALQQGYVTSM-----------------------FGRRRYTPD 812 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVL 626 + ++ R Q + DI+ M+ ++L Sbjct: 813 IDSSNV---NRRLAAERMAINMPL------QGSAADIMKIAMIRVHDEMRRRGLRSRMLL 863 Query: 627 TVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE++ E P ++ + L +M + +PL E + Sbjct: 864 QVHDELLFEVPRSELRTMADLAVDVMEKVVT--LNVPLVVEVAAGANW 909 >gi|288801790|ref|ZP_06407232.1| DNA polymerase type I [Prevotella melaninogenica D18] gi|288335832|gb|EFC74265.1| DNA polymerase type I [Prevotella melaninogenica D18] Length = 920 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 100/698 (14%), Positives = 201/698 (28%), Gaps = 159/698 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59 + ID ET S ++ ++ +F ++ + + Q+ K Sbjct: 350 VSIDTETTSTDAIS----------AELVGLSFSVEEKKAFYVAVPANYEEALKIVQIFKP 399 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALK 117 E+ + + N ++ VL + + + T++ + + E L Sbjct: 400 LYESDKIMKIGQNIKYDYEVLTRY-GVTLQ-GKMFDTMIAHYLIQPELHHNMDYMAETL- 456 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 S + +EL+ + K + EY D +T + LEP Sbjct: 457 -LSYQTIHIEELLG---------PKGKKQKNMRDLSPTDIYEYAAEDADITLRLKNVLEP 506 Query: 178 LSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E L + + G C+D ++I + +QE+ Sbjct: 507 RLKELGVEELFWNIEMPLVRVLADMELNGVCLDTEALQDTSKIFTERMKQYEQEIYKEAG 566 Query: 228 GLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 + +++ LF + + T+T T + VL S + +P + N R Sbjct: 567 -EEFNISSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLESKSPIVRNILNYR-G 624 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + ++ L + +N T + TGR S QN+P + +E Sbjct: 625 MKKLLSTYIDALPKLINPRTGHIHTSFNQALTATGRLSSSDPNLQNIPVRTDDGKE---- 680 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R C I EG AD + IE R++A ++ ++ ++AF Sbjct: 681 ---------------------IRKCFIPEEGCLFFSADYSQIELRIMAHLSEDENMMEAF 719 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ T A+ ++V +VT QR K + G+ Sbjct: 720 REGHDIHRATAAKIWHVDIDKVTDAQRKKAKQANFGII--------------YGITTYGL 765 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + + + + + + +V Sbjct: 766 AQRMDI------------------------------PNGEAKELIEGYFRTFPKVQAYME 795 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + R D+ + + T Sbjct: 796 HAKEVAR--------------------------AKGYAETLFHRRRYLADINSRNA---T 826 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 R +Q DI+ M+ + ++L VHDE+ Sbjct: 827 VRGFAERNAINAP------IQGTEADIIKVAMVRIWERFKKEGIRSKMILQVHDELNFSV 880 Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + + +PL A+ K + Sbjct: 881 FPEEREQVERIVIEEMQNA--YPLNVPLIADAGWGKNW 916 >gi|326568454|gb|EGE18534.1| DNA polymerase I [Moraxella catarrhalis BC7] Length = 956 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 105/716 (14%), Positives = 207/716 (28%), Gaps = 178/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 ID ET + ++ + D+ H Sbjct: 370 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 419 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106 + K LEN ++ + + ++ + K ++I + T++ + Sbjct: 420 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 477 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + A+ + L + E + + A +Y D Sbjct: 478 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDAD 525 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVER 215 +T +F R ++++ L + G +D L+ D + Sbjct: 526 ITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 585 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271 L E E + + ++L LF + G+ T+T T + VLS P Sbjct: 586 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 642 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 V +R S+ +TL A + GR+ + + TGR S QN+P Sbjct: 643 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 700 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + + +R IA +G+ ++ AD + IE R++A Sbjct: 701 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 735 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +G++ ++AF D++ T A ++VT +R K + Sbjct: 736 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF-------------- 781 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ A + + A + K + Sbjct: 782 GLLYGMSAFGLAKQIGVDRAV------------------------------AQDYIKRYF 811 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ + E +Q + GR L Sbjct: 812 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 845 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627 D+ ++ + R Q + +I+ M+ K ++L Sbjct: 846 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 896 Query: 628 VHDEIVCETPDTDEFNASMLYHL-MTSNPS-------WAKG--LPLKAEGYESKRY 673 VHDE+V E + L + M + + WA +PL E + + Sbjct: 897 VHDELVFEVDTDKAHDIGNLIKIAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 952 >gi|206562759|ref|YP_002233522.1| DNA polymerase I [Burkholderia cenocepacia J2315] gi|198038799|emb|CAR54761.1| DNA polymerase I [Burkholderia cenocepacia J2315] Length = 917 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 112/702 (15%), Positives = 204/702 (29%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------ 57 D ET + + ++ +F + H P MP+ L Sbjct: 343 AFDTETTALDPML----------ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVL 392 Query: 58 ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113 K LE+ D V + ++ VL DI ++ TL+ + Sbjct: 393 TRLKPWLESADRKKVGQHLKYDAQVLANY---DIELNGIEHDTLLESYVVESHRTHDMDS 449 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ K K E + A EY D +T ++ Sbjct: 450 LALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITLQLHH 499 Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E + + + + G +D A H + + +L+ + Sbjct: 500 ALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIELEGQA 559 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + +++ F + L + T + T + VL + P + Sbjct: 560 YELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLE 618 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R S+ + L +N T + TGR + QN+P + Sbjct: 619 HR-GLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR 677 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA+ G ++V AD + IE R++A ++G+ Sbjct: 678 -------------------------IREAFIAAPGHRIVSADYSQIELRIMAHISGDASL 712 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF GED++ T A F V P +V DQR I KV+ G++ Sbjct: 713 LRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIYGMS 758 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A A + + ++ V+ Sbjct: 759 ------------------------------AFGLASNLGITRDAAKLYIDRYFARYPGVA 788 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + ++ + GR L ++ Sbjct: 789 QYMEDTRATAKE--------------------------KGYVETVFGRRLWLPEINGGNG 822 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 R +Q + D++ M+ + +++ VHDE+ Sbjct: 823 PRRQA---AERAAINAP------MQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDEL 873 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E P+ + L +M +PL AE + Sbjct: 874 VLEVPEGELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913 >gi|146305195|ref|YP_001185660.1| DNA polymerase I [Pseudomonas mendocina ymp] gi|145573396|gb|ABP82928.1| DNA polymerase I [Pseudomonas mendocina ymp] Length = 931 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 108/704 (15%), Positives = 198/704 (28%), Gaps = 162/704 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53 + D ET S A+ ++ +F H + Sbjct: 352 IAFDSETTS----------IDAQQAQLVGLSFAVKAGEAAYVPLAHSYMGVPQQLDRDAV 401 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLP---SAL 109 + LK LE+ V ++ ++ VL I + T++ + + Sbjct: 402 LKALKPILEDPAKAKVGQHAKYDINVLANAST-PIAVQGVAFDTMLESYVLDSTATRHDM 460 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 ++ G I E + + A G Y D VT Sbjct: 461 DSLALKY--------LGHSTIRF----EDIAGRGAKQLTFDQIALEQAGPYAAEDADVTL 508 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + + L E L + I G VD L + + + +L Sbjct: 509 RLHQELWGRLEAVPSLAKVLREIEIPLVPVLARIERNGALVDAKLLGEQSVELGEKLVEL 568 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAI 274 +++ + + ++L L+ + G + T +T + VL+ + + Sbjct: 569 ERKAFEIAG-EEFNLASPKQLGVILYEKLGYPVISKTAKGQPSTAEAVLAELAEQDFELP 627 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 +V S+ + L E +N GR+ + A+ TGR S QN+P + Sbjct: 628 KVLMQYRSLSKLKSTYTDKLPEQINPRTGRIHTSYHQAVAA-TGRLSSSDPNLQNIPIRT 686 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A +G K++ AD + IE R++A +A Sbjct: 687 AEGRR-------------------------IRQAFVAPKGYKMMAADYSQIELRIMAHLA 721 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ L AF D++ T A F VA +VT DQR K + L Y A Sbjct: 722 KDEGLLDAFRHDLDVHKATAAEVFGVALEEVTSDQRRKAKAINFGLIYGMSA-----FGL 776 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 +++ + + ++ + E + G R Sbjct: 777 AKQIDVERKEAQAYIDRYFARYPGVLSYMERTRAQAAEQGYVETVFGR---------RLY 827 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + + E+ Sbjct: 828 LPEIHAQNQAMRKGAERAA----------------------------------------- 846 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAV---SRDILAEGMMNATKAGYDIVLTVHD 630 N T + R ++ +Q +R IL VHD Sbjct: 847 -INAPMQGTAADIIKRAMI----AVDDWLQGSGIDARIIL----------------QVHD 885 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E + + L LM +PL E + Sbjct: 886 ELVLEVREDLLEEVGAQLKALMGGAAQ--LDVPLLVEVGVGANW 927 >gi|89900119|ref|YP_522590.1| DNA polymerase I [Rhodoferax ferrireducens T118] gi|89344856|gb|ABD69059.1| DNA polymerase I [Rhodoferax ferrireducens T118] Length = 957 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 109/702 (15%), Positives = 209/702 (29%), Gaps = 155/702 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51 + +D ET S ++ ++ +F H Sbjct: 381 DLVALDTETTSLDEMR----------AQIVGISFSVTPGEAAYIPLAHAYPDAPAQLPLA 430 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSAL 109 + LK L++ + + ++R V +++ + T++ + + P L Sbjct: 431 DVLAKLKPWLQDASHKKLGQHVKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEVTKPHGL 488 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 ++ E L E + +Y D +T Sbjct: 489 ASLAERH------------LGRSGISFEDLCGKGANQICFDQVDIAQAAQYSCEDSDMTL 536 Query: 170 EIFKRLEPLSSKEQELWYL----------DQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 ++ + L PL +L ++ I G +D + + +L+ Sbjct: 537 DVHRALWPLLQANDKLRFIYELEIASSEALYRIERNGVLIDGPTLAVQSHELGQRILQLE 596 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 +E L + +++ F + GL + T +T VL + P + Sbjct: 597 KEAHELAGQP-FNLSSPKQIAEIFFTKLGLPVVKKTPTGSPSTDDEVLQKLAEDYPLPAK 655 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R ++ + L + + GR+ A TGR S QN+P + Sbjct: 656 ILEHR-GLAKLKGTYTDKLAQLAHPRTGRVHTHYAQAIA-VTGRLSSLEPNLQNIPVRTP 713 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 VR +A G + AD + IE R++A ++G Sbjct: 714 EGRR-------------------------VREAFVAPPGSVIASADYSQIELRIMAHISG 748 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L AF G D++ T + F V AQVT +QR KV+ L Y A Sbjct: 749 DAALLLAFHDGIDVHRATASEIFGVDRAQVTSEQRRYAKVINFGLIYGMSA-----YGLA 803 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L+++ A + + +N+ + + G R Sbjct: 804 KALSIDNTAAKNYIERYFDRYPGVKNYMEHTRALAKRQGYVETVFGR---------RLYL 854 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 ++ P+G G Sbjct: 855 PEINS-------------------------------------------PNGPRRS----G 867 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 R+ +N + KL+ VQ +++ K +++ VHDE+V Sbjct: 868 AERAAINAPMQG---TAADLIKLSMVKVQ---------QVIDEEKRATKMIMQVHDELVF 915 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E P+++ + LM +PL AE + K Sbjct: 916 EVPESEIDWVRHEVPRLMAGVAH--LKVPLLAEVGVGANWDK 955 >gi|121587745|ref|ZP_01677506.1| DNA polymerase I [Vibrio cholerae 2740-80] gi|121548044|gb|EAX58122.1| DNA polymerase I [Vibrio cholerae 2740-80] Length = 525 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 100/641 (15%), Positives = 190/641 (29%), Gaps = 144/641 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEA 115 LK LE+ V N ++ +V+ +++ R T++ + A Sbjct: 1 LKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLA 58 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L+ E ++ A +Y D VT + +R+ Sbjct: 59 LRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRI 108 Query: 176 EPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 PL ++ L + I G +D L +Q + + +L+Q Sbjct: 109 HPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYE 168 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 L + ++L+T LF + L T +T + VL P + R Sbjct: 169 LAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIEYR 227 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L + +N T + TGR S QN+P + Sbjct: 228 -GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR-- 284 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R +A G K++ D + IE R++A ++G+Q L Sbjct: 285 -----------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLD 321 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G+D++ T A V QV+ +QR K + G++ Sbjct: 322 AFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS-- 365 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A + + + +++ V + Sbjct: 366 ----------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVMQY 397 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + Q + GR L ++ + + Sbjct: 398 MEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNAMR 431 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIV 633 + R +Q + DI+ + M+ + +++ VHDE+V Sbjct: 432 R---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELV 482 Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E ++ + LM S A +PL AE + Sbjct: 483 FEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 521 >gi|242241361|ref|YP_002989542.1| DNA polymerase I [Dickeya dadantii Ech703] gi|242133418|gb|ACS87720.1| DNA polymerase I [Dickeya dadantii Ech703] Length = 931 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 105/698 (15%), Positives = 199/698 (28%), Gaps = 154/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD + Sbjct: 355 AFDTETDSLDTISTT----------LVGVSFAINAGEAAYLPLGHDYLDAPEQLDRDKVL 404 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 +LK LE+ V + N F++ V+ + + T++ + + + Sbjct: 405 ALLKPVLEDASVLKIGQNLKFDKGVMARY-GITLRGIA-FDTMLESYVLDSVAGRHDMDS 462 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ Y D VT + Sbjct: 463 LSERY------------LNHKTITFEEIAGKGKNQLTFNQIPLEQAAVYAAEDADVTLRL 510 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L + L + + +G +D A+ ++ + +L+ Sbjct: 511 HQVLSEKLNKEPSLFQVFQDIDMPLVPILSRMERQGVLIDTAILAEHSKELTQRLAELEV 570 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 L V + ++L+ L+ + L + T +T + VL+ P + Sbjct: 571 RAHELAG-EVFNLSSTKQLQAILYEKLQLPVTKKTPKGAPSTNEEVLAELALDYPLPKVI 629 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N + T + TGR S QN+P + Sbjct: 630 LEYR-GLAKLKSTYTDKLPMMINPLTKRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEG 688 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA EG +V AD + IE R++A ++ + Sbjct: 689 RR-------------------------IRQAFIAPEGYCIVAADYSQIELRIMAHLSCDA 723 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 LKAF G D++ T A F + +VT +QR K + L Y A + Sbjct: 724 GLLKAFSDGLDIHRATAAEVFGLPIDKVTAEQRRSAKAINFGLIYGMSA-----FGLSRQ 778 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L + N E + +++ ++ E G R SR Sbjct: 779 LGIGRNEAQKYMNLYFERYPGVQHYMEQTRQQAAEQGYVATLDGRRLYLPDIHSRNAISR 838 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 +A G A K+ + + ++ Sbjct: 839 -----KAAERAAINAPMQGTAADIIKKAMASIDAWLLSQEEPLI---------------- 877 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 I+Q VHDE+V E Sbjct: 878 ----------------------NMIMQ------------------------VHDELVFEV 891 Query: 637 PDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + + LM S +PL+ + K + Sbjct: 892 HESVLEGAKAKIKALMESCMQ--LNVPLQVDVGSGKNW 927 >gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13] gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13] Length = 914 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 112/695 (16%), Positives = 202/695 (29%), Gaps = 150/695 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 ID ET S + ++ + + H + Sbjct: 340 AIDTETTSLD----------VMNAKLVGISLSIEPGHAAYIPLAHHSMEQSEQLPLQSVL 389 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LEN V N ++ VL + + TL+ + Sbjct: 390 DKLKPWLENPKKHKVGQNLKYDSHVLANY-GIRLQGI-VHDTLLESYVLESHRRHDMDSL 447 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + K A + Y D VT ++ + Sbjct: 448 SERFLDYKPVS----------YTDICGKGASQIGFDEIAIDVATHYAAEDADVTLQLHQS 497 Query: 175 LEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + + Q + G +DV + ++ + V+ L + Sbjct: 498 MWPRLKENDGLRFIYEKIEIPTSIVLQKMERNGVLIDVDKLNVQSRELGVKMDSLQENAY 557 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +T G + ++L LF + L + T + T + VL + P + + Sbjct: 558 -VTAGQPFNLNSPKQLGELLFDKLKLPMIKKTPSGAPSTSEEVLEKLAEDFPLPKIILDY 616 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N + T + TGR + QN+P S Sbjct: 617 R-GMSKLKTTYTDKLPRMVNPETGRVHTNYAQAVAVTGRLASNDPNLQNIPIRSEEGRR- 674 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IAS G K++ AD + IE R++A ++ + L Sbjct: 675 ------------------------IREAFIASPGNKIISADYSQIELRIMAHLSDDASLL 710 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 KAF G+D++ T + F++ P +VT DQR KV+ L Y A + L + Sbjct: 711 KAFHDGQDVHRATASEIFDITPLEVTSDQRRYAKVINFGLIYGMSA-----FGVASNLGI 765 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + E + + ++ E + G Sbjct: 766 SRTDAKNYIDRYFERYPGVARYMDETRQLAREQGYVETVFGR-----------------R 808 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 LW + P+G + + Sbjct: 809 LW-----------------------------------LPEINSPNGPRRQAAERAAINAP 833 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + T + KL+ VQ D + K +++ VHDE+V + P+ Sbjct: 834 MQGTAADII-------KLSMIAVQ----DW-----LEKEKLDSKLIMQVHDELVLDVPEK 877 Query: 640 DEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + L LM +PL AE + Sbjct: 878 ELVLVREKLPELMAQVAR--LKVPLIAEVGVGDNW 910 >gi|311105001|ref|YP_003977854.1| DNA polymerase I [Achromobacter xylosoxidans A8] gi|310759690|gb|ADP15139.1| DNA polymerase I [Achromobacter xylosoxidans A8] Length = 905 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 108/703 (15%), Positives = 205/703 (29%), Gaps = 166/703 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VM 53 + +D ET S ++ ++ + H + Sbjct: 332 VAVDTETTSLDEM----------QARMVGMSLAVSPGVACYIPVAHRGPDNAPQLPKAEV 381 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111 LK LE+ + H++ ++ V + + T++ A L Sbjct: 382 LARLKPWLEDATRAKLLHHAKYDAHVFAN-EGIKLAGIT-EDTMLQAYVLESHRGVGLND 439 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + L E + A G Y D T ++ Sbjct: 440 LAQRY------------LGRSGVSYEDLCGKGAKQIGFDEVAVDKAGHYAAEDSDFTLQL 487 Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P+ + + ++ + T+ G VD A + + E +L+Q+ Sbjct: 488 HQVLRPMVAADEGLNRIYLLEMQVSEVLTTVERNGVKVDAAELGRQSHKLGQEMLQLEQK 547 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277 L + ++L LF L + T +T + VLS + P + Sbjct: 548 AYELAGQP-FNLNSPKQLGEILFGRMQLPVVRKTASGAPSTDEEVLSKLAQDYPLPQVLL 606 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R S+ + L +N + T A TGR + QN+P + + Sbjct: 607 EYR-GLSKLKSTYTDKLPRMINPNTGRVHTHYSQAAVITGRLASSDPNLQNIPVRTEAGR 665 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 VR IA +G L+ AD + IE R++A ++ + Sbjct: 666 R-------------------------VREAFIAEQG-MLLSADYSQIELRIMAHVSDDAN 699 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AFE GED++ T + F V+ V+ +QR K + G+ Sbjct: 700 LQRAFEAGEDIHRATASEVFGVSLEDVSTEQRRAAKAINF--------------GLIYGM 745 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A A + + ++ V Sbjct: 746 GVFGL------------------------------ASNLGITRDAAQAYIDRYFARYPGV 775 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + ++ + + + GR L ++ R Sbjct: 776 AMYMDDTRRRARE--------------------------QGYVETVFGRRLQLPEI---R 806 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631 + R +Q + D++ M+ K +++ VHDE Sbjct: 807 GASGPRRQGAERAAINAP------MQGTAADLIKMAMIAVQDWLEAEKLQTRMIMQVHDE 860 Query: 632 IVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E PD + L LM + + +PL AE K + Sbjct: 861 LVLEAPDAELELVKEALPRLMCNVAT--LRVPLVAEVGMGKNW 901 >gi|86135059|ref|ZP_01053641.1| DNA polymerase I [Polaribacter sp. MED152] gi|85821922|gb|EAQ43069.1| DNA polymerase I [Polaribacter sp. MED152] Length = 945 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 95/700 (13%), Positives = 199/700 (28%), Gaps = 162/700 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59 + D ET L +I AF ++ + + + + Sbjct: 374 VCFDTETTGLKALEV----------ELIGIAFSYEIGKGYYVSFPENQEETKAILEEFRP 423 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLP--SALKAVGEAL 116 E+ + V HN ++ VL ++P+ + T++ + + E Sbjct: 424 FFESEMIEKVGHNLKYDIKVLSNY---NMPVKGKLFDTMIAHYLINPDMRHNMDVLAETY 480 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + ELI + + EY D +T ++ + Sbjct: 481 --LNYHPVSITELIGK---------KGKNQLSMRVVPIKDQTEYAVEDADITYQLKQHFT 529 Query: 177 PLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + + G VD L+ + + +L++E+ Sbjct: 530 KELDSGNVTELFNKVELPLVSVLTAMEIEGINVDTNFLKQLSTALTDDINRLEKEIYEQA 589 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L LF L T+ T + +LS K + R Sbjct: 590 G-EEFNIASPKQLGIVLFENMKLVDKPKKTKTGQYKTGEDILSFLAKEHKIIRDIQEYRQ 648 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ L +N T + TGR S QN+P + E Sbjct: 649 Y-KKLQSTYVDALPNEINKKTGRIHTQYMQAVAATGRLSSNNPNLQNIPIRTERGRE--- 704 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 VR + E L+ AD + IE R++A ++ E+ + Sbjct: 705 ----------------------VRKAFVPKDENYVLLAADYSQIELRIIAALSEEETMIN 742 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ GED++ +T A+ F V VT++QR+ K + + Y + + Sbjct: 743 AFKNGEDIHASTAAKVFGVDINDVTREQRSNAKTVNFGIVY-----GVSAFGLSNQTD-- 795 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + + ++ Sbjct: 796 -------------------------------------LSRGEAKELIDTYYETYPKLKAY 818 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + + R +D+ + + + Sbjct: 819 MSAQVDFARE--HGYVETVLN------------------------RRRYLKDINSRNAMV 852 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 + + +Q + DI+ M+N ++L VHDE+V Sbjct: 853 RSGAERN---------AVNAPIQGSAADIIKLAMINIHNRFIQEGFKSKMLLQVHDELVF 903 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + ++ + M + +PL E + + Sbjct: 904 DAHKDELETIKPIIKNEMENAFKMT--VPLDVEMGIGQNW 941 >gi|296159650|ref|ZP_06842473.1| DNA polymerase I [Burkholderia sp. Ch1-1] gi|295890094|gb|EFG69889.1| DNA polymerase I [Burkholderia sp. Ch1-1] Length = 913 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 109/701 (15%), Positives = 200/701 (28%), Gaps = 162/701 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ + + H + Sbjct: 339 SFDTETTSLDPMI----------AQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVL 388 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ + V + ++ VL +++ TL+ + Sbjct: 389 ARLKPWLESVEHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVVESHRTHDMDSL 446 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E A EY D +T + + Sbjct: 447 ALRHLGVKTI----------KYEEVAGKGAGQIGFDEVALDKAAEYAAEDADITLRLHQV 496 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + G +D + + +L+ E Sbjct: 497 LYPQVAAEKTLQYVYHDIELPTSRVLRKMERTGVLIDSEKLRQQSSEIATRLIQLESEAY 556 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + T + T + VL + P + + Sbjct: 557 VLAGG-EFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDFPLPKILLEH 615 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N+ T + TGR + QN+P + Sbjct: 616 R-GLSKLKSTYTDKLPRMVNATTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRR- 673 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA G KLV AD + IE R++A ++G++ L Sbjct: 674 ------------------------IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLL 709 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 ++F GED++ T A F+V P +V+ DQR + KV+ G++ Sbjct: 710 RSFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINF--------------GLIYGMSS 755 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A A + + ++ V+ Sbjct: 756 FGL------------------------------ASNLGITRDAAKLYIDRYFARYPGVAR 785 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 +E + + + GR L ++ Sbjct: 786 YMDETRVSAK--------------------------AKGYVETVFGRRLWLPEINGGNGP 819 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 R +Q + D++ M+ K G +++ VHDE++ Sbjct: 820 RRQA---AERAAINAP------MQGTAADLIKLSMIAVQKWIEESKIGTRMIMQVHDELI 870 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E PD + + L LM +PL AE + Sbjct: 871 LEVPDAELSDVRKRLPELMCGVAD--LKVPLVAEVGAGLNW 909 >gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC 33861] gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC 33861] Length = 930 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 97/701 (13%), Positives = 207/701 (29%), Gaps = 160/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQV---L 57 + D ET L ++ +F F+ ++ Sbjct: 357 KSFCFDTETTGLDALV----------ADIVGLSFAFEKGKAYYVPTPDSREQALEIVNIF 406 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K LE+ ++ V N ++ +L ++ + T++ + + E Sbjct: 407 KPVLEDANIEKVGQNIKYDILLLSRY-DVKVK-GTLFDTMLAHYLIDPDTRHGMDVLAE- 463 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 +LI + L EY D +T ++ ++ Sbjct: 464 -NYLGYIPVSITKLIGE---------KGKKQGNMRDVEIELIKEYASEDADITLQLKEKF 513 Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 EPL + E L Y+ I G +DV + ++ ++ + L+ + Sbjct: 514 EPLLEETATLKLAQEVEFPLVYVLSEIEKNGVKIDVDVLSVFSKTIEEDVRNLEASIYEK 573 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280 + ++L LF + L + T+ T + VL + + + + R Sbjct: 574 AGVK-FNIASPKQLGEVLFDKLQLDPKAKKTKTGQYKTGEDVLLTLANKSDIVQDILDFR 632 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L +N L T + TGR S QN+P + E Sbjct: 633 Q-LQKLKSTYVDALPGLINPTTGLIHTSYNQAVAATGRLSSTNPNLQNIPIRTERGRE-- 689 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 VR I E ++ AD + IE R++A ++ + L Sbjct: 690 -----------------------VRKAFIPRSENNVILSADYSQIELRLMAELSQDANML 726 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ G D++ T A+ + + +V+ DQ Sbjct: 727 EAFQKGYDIHRATAAKVYGLELDEVSSDQ------------------------------- 755 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A NF ++ + + + Q++S + + Sbjct: 756 -------------RRNAKAVNFGIIYGQSAFGLSQSLGIPRREAADIIDQYFQQYSGIRD 802 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + ++ N + R RD+ + Sbjct: 803 YMAKAIASAKE--------------------------NGFVETILKRRRYLRDINSANM- 835 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633 T R +Q + D++ M+ + +++ VHDE+V Sbjct: 836 --TVRGFAERNAINAP------IQGSAADMIKVAMLRIQEDIEQQQLSGKMIMQVHDELV 887 Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + P + ++ + M + +P++ E + K + Sbjct: 888 FDVPLDEVEKFKTLIQNRMKTAIP--LQVPIEVEIGQGKNW 926 >gi|219815956|gb|ACL37078.1| DNA polymerase I [uncultured bacterium] Length = 927 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 98/706 (13%), Positives = 190/706 (26%), Gaps = 169/706 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 +D ET S ++ +F HD + Sbjct: 352 AVDTETTSVD----------YRLARIVGVSFALQASEAFYIPIGHDYMGAPEQLDAKFVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLP---SALK 110 LK LEN + + + ++ V I + W T++ + + Sbjct: 402 DTLKPILENPAIGKIGQHMKYDAHVFNNH---GISLAGWAFDTMLASYVLNPTATRHGMD 458 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + + L E + ++ Y D +T Sbjct: 459 DLAQYY------------LDYTTTTFEQIAGKGAKQLTFNQIELEKAAPYAAEDADITWR 506 Query: 171 IFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ E + + + G +D+ L Q + L+ Sbjct: 507 LYEYFAQALAKIPKLEKLLLEIEMPAAQVLYEMENNGIRLDIPFLAELGQRFGAQILTLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQ 275 L + ++L LF + G+ T + T + +L P Sbjct: 567 SHAIELAGQP-FNVSSPKQLGEILFDKLGIAGGKKTASGQYATGEAILEKI--DHPIIAT 623 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R S+ ++L+ +S+ + T + TGR S QN+P Sbjct: 624 ILEYR-SLSKLKSTYTDSLIAQSDSETQRVHTSYHQAITATGRLSSTDPNLQNIPIRGEV 682 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA +G+ ++ AD + IE R++A + + Sbjct: 683 GR-------------------------QIRQAFIAPKGRIILAADYSQIELRLMAHFSQD 717 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + LKAF G D++ T A +A VT DQR K + Sbjct: 718 EALLKAFRDGRDIHQATAAEVMGIALEDVTSDQRRQAKAIN--------------FGLLY 763 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + + ++ Sbjct: 764 GMS------------------------------AFGLAKQLKLSRAEAQEYITLYFSRYP 793 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + + + GR L ++ Sbjct: 794 SVHDYMENTR--ALAAEQGYVETVL------------------------GRRLYMENIRA 827 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHDE 631 + + R Q + DI+ M++ K ++L VHDE Sbjct: 828 GNAMVRQA---AERAAINAPL------QGSAADIIKLAMISVDQALPKEHAKMLLQVHDE 878 Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKG--LPLKAEGYESKRYR 674 +V E + ++L LM + +PL+ E + Sbjct: 879 LVFEVDEDKADEVTALLKKLMPAVLQGRADIAVPLEIEVGRGVNWG 924 >gi|197106849|ref|YP_002132226.1| DNA polymerase I [Phenylobacterium zucineum HLK1] gi|196480269|gb|ACG79797.1| DNA polymerase I [Phenylobacterium zucineum HLK1] Length = 944 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 102/715 (14%), Positives = 191/715 (26%), Gaps = 174/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49 + D ET + + + H Sbjct: 356 IVAFDTETDALSS----------ATAGLCGVSLAVAPGEACYIPLGHCEAEGLQLEAAAD 405 Query: 50 -----DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 LK LE+ V VA N+ ++ VL I + T++++ Sbjct: 406 LTQIPLEQAIARLKPLLEDPSVLKVAQNAKYDIAVLSRY---GIEVGPIDDTMLISYVLE 462 Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + K+ E IA K Y Sbjct: 463 AGLHNHGMDELS--------KLGLDHEPIAFKS----VAGTGKAQKSFKYVGLSEATCYA 510 Query: 162 KGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P + E + + + + G VD L+ Sbjct: 511 AEDADVTLRLWEHLKPRLAHEGLATVYETLERPMPKVLADMECAGAKVDAERLRQLSNEF 570 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 +L+ E L + +++ LF E GL +T +T +L Sbjct: 571 GQRMAELEAEAHRLAGRP-FNLGSPKQIGEVLFKEMGLASGRVTATGAFSTDASMLEDLA 629 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + ++ + + S+ + LV A++ T L ++ TGR S Sbjct: 630 AQGHELPRILLDWRQLSKLKGTYTDALVAAISEQTGRVHTSFSLASTTTGRLSSSDPNLM 689 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R +A GK L+ AD + IE R Sbjct: 690 NIPIRTEEGRK-------------------------IRRAFVAEPGKVLISADYSQIELR 724 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA + +AF G D++ T + F V + + R K + Sbjct: 725 LLAHIGDIPQLKRAFREGLDIHAMTASEMFGVPVEGMPSETRRRAKAINF---------- 774 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A + Sbjct: 775 ----GIIYGIS------------------------------AFGLANQLGIPQDEAGAYI 800 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 K + ++ + + QA + GR Sbjct: 801 KTYFERFPGIRAYMDRTKQAARS--------------------------QGFVHTIFGRK 834 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAG 621 + V + R +Q + D++ M+ Sbjct: 835 VNIPAVKSKSQAER---AFGDRAAINAP------IQGSAADVMRRAMIRMPGALKAEGLT 885 Query: 622 YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E P+ + + +M P+ A +PL E + + Sbjct: 886 ARMLLQVHDELVFEAPEAEAEAVIRIAKAVMEKAAEPAVAISVPLVVEARAAPNW 940 >gi|332665102|ref|YP_004447890.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100] gi|332333916|gb|AEE51017.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100] Length = 935 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 99/701 (14%), Positives = 206/701 (29%), Gaps = 161/701 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58 D ET ++ +F + + ++ + Sbjct: 362 EFCFDTETTHVEPT----------QAELVGMSFAYKSGEAYYVPVPAGKENAQAVVEIFR 411 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 LEN + +A N ++ V K +++ + T+V + + E Sbjct: 412 PVLENEKILKIAQNLKYDAIVFKWY-GVEVR-GPYFDTMVAHYLLEPEMRHGMDYLAETY 469 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 S + LI + + +Y D +T ++ + Sbjct: 470 --LSYSPISIEMLIGK---------KGKDQLNMSQIDLEKVTDYAAEDADITLQLKELFA 518 Query: 177 PLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P E L + + G +D ++ ++++ L+Q + Sbjct: 519 PKLEEGGVQELFDTIECPLIKVLADLEYEGIRIDSDYLDVYSKELEIQIQTLEQSIYEQA 578 Query: 227 YGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF + + +T + L P + N R Sbjct: 579 GVK-FNIGSPKQVGDLLFERLKVPYKGAKTKTGQYSTDEDKLLELAPEFPIIQTILNFR- 636 Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ ++ L + +N GR+ + A+ TGR S QN+P + + Sbjct: 637 GLAKLKSTYVDALPKMVNPRTGRIHSSFNQALAA-TGRLSSNNPNLQNIPVRTPEGAK-- 693 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKL 399 VR I + L+ AD + IE R++A ++G+ L Sbjct: 694 -----------------------VRRAFIPRDDQHTLLSADYSQIELRLIADISGDVAML 730 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ +D++ T A+ FNV VT++QR K + Sbjct: 731 EAFQNNQDIHTATAAKVFNVPFDLVTREQRYQAKTVN----------------------- 767 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 F + + T + + A+ +S + Sbjct: 768 ---------------------FSILYGAGATNLSRQLSIKRTEAKELIDAYFALYSGLKG 806 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + E +NG GR R++ + S Sbjct: 807 YMVTV---VEDARKNGYVTTL-----------------------MGRRRYLREINSKSSL 840 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + R VQ + D++ M+N +A ++L VHDE+V Sbjct: 841 ERSN---AERVA------VNTPVQGSAADMIKVAMVNIHQALLEQGLKTKMILQVHDELV 891 Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + P+ + ++ M S +P++ + + Sbjct: 892 FDVPNEELEIVKPIIVEKMRSALP-KLKVPIEVGLGTGQNW 931 >gi|91777303|ref|YP_552511.1| DNA polymerase I [Burkholderia xenovorans LB400] gi|91689963|gb|ABE33161.1| DNA polymerase A [Burkholderia xenovorans LB400] Length = 913 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 109/701 (15%), Positives = 198/701 (28%), Gaps = 162/701 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ + + H + Sbjct: 339 SFDTETTSLDPMI----------AQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVL 388 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ V + ++ VL +++ TL+ + Sbjct: 389 ARLKPWLESAGHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVVESHRTHDMDSL 446 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E A EY D +T + + Sbjct: 447 ALRHLGVKTI----------KYEEVAGKGAGQIGFDEVALDKAAEYAAEDADITLRLHQV 496 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + G +D + + +L+ E Sbjct: 497 LYPQVAAEKTLQYVYHDIELPTSRVLRKMERTGVLIDSEKLRQQSSEIATRLIQLESEAY 556 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + T + T + VL + P + + Sbjct: 557 VLAGG-EFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDFPLPKILLEH 615 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N+ T + TGR + QN+P + Sbjct: 616 R-GLSKLKSTYTDKLPRMVNATTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRR- 673 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA G KLV AD + IE R++A ++G++ L Sbjct: 674 ------------------------IREAFIAPAGHKLVSADYSQIELRIMAHISGDESLL 709 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +F GED++ T A F+V P +V+ DQR + KV+ G++ Sbjct: 710 HSFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINF--------------GLIYGMSS 755 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A A + + ++ V+ Sbjct: 756 FGL------------------------------ASNLGITRDAAKLYIDRYFARYPGVAR 785 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 +E + + + GR L ++ Sbjct: 786 YMDETRVSAK--------------------------AKGYVETVFGRRLWLPEINGGNGP 819 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 R +Q + D++ M+ K G +++ VHDE++ Sbjct: 820 RRQA---AERAAINAP------MQGTAADLIKLSMIAVQKWIEESKIGTRMIMQVHDELI 870 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E PD + + L LM +PL AE + Sbjct: 871 LEVPDAELSDVRKRLPELMCGVAD--LKVPLVAEVGAGLNW 909 >gi|296533832|ref|ZP_06896368.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957] gi|296265850|gb|EFH11939.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957] Length = 968 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 110/709 (15%), Positives = 198/709 (27%), Gaps = 162/709 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------ 51 L ID ET S L + ++ + H P Sbjct: 379 LAIDTETDSLDAL----------NANLVGLSLAVAPGRACYVPLRHGPPPGSGDLLAEAP 428 Query: 52 ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 + + L+ L + V + HN+ ++ VL + + I T++++ S Sbjct: 429 AAPAQLSQAEVVEALRPLLADPAVLKILHNAKYDLEVLARPEHGALDITPVDDTMLISYS 488 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + + G I P + A Sbjct: 489 MDAGRHGHGMDELSLRH--------LGHRPIPFD----EVTGTGRARIPFSQVALDKATA 536 Query: 160 YCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D VT +++ L P E+ + + + + G VD A + + Sbjct: 537 YAAEDADVTLRLWQALRPRLRPDRSLALYEQVERRMVAVLRDMEMAGIKVDGAELARIGE 596 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSS 265 L+QE+ L + ++L LF E L + T VL Sbjct: 597 DFSQRMVVLEQEIHELAG-KPFNVGSPKQLGEILFDEQKLPGGKRGKNGAWGTDASVLED 655 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + + + + ++ + L ++ T + + TGR S Sbjct: 656 LAARGHELPRRVLHWRQLAKLKSTYVEGLAAQIDRRDGRVHTDFSMAVTSTGRLSSTEPN 715 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P + +R +A G L+ AD + IE Sbjct: 716 LQNIPIRTEEGVR-------------------------IRRAFVAEPGHVLLAADYSQIE 750 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A AF GED++ T A F +AP +V K+ R K + + Y A Sbjct: 751 LRLLAHLADVPSLRDAFAKGEDIHSRTAADIFGLAPDKVDKEARRRAKTINFGIIYGMSA 810 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 L + ++ ++ ++ E G Sbjct: 811 -----FGLAARLGIGPGEARGIIDAYFSQYPGILEEMERLKSEAREKGYVLSPFGR---- 861 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 +LW + QA EQ Sbjct: 862 -------------KLWIDGIQAKEQARRG------------------------------- 877 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 R+ +N Q + + A ++ Sbjct: 878 --------NAERAAINAPF-QGGAAEIIKRAMVRMP-----------AALRAAGLSARML 917 Query: 626 LTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 L VHDE++ E P+ + + + +M S + +PLKAE + Sbjct: 918 LQVHDELLFEVPEAEVDATAECVRQVMESVAT--LRVPLKAEIGHGANW 964 >gi|254412782|ref|ZP_05026555.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420] gi|196180517|gb|EDX75508.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420] Length = 984 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 103/700 (14%), Positives = 209/700 (29%), Gaps = 148/700 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVH-------DPVMPQVL 57 D ET + ++ + H + + L Sbjct: 398 DTETSDLKP----------RNAELVGIGCCWGLEATDTAYIPIAHNQGQNLDQQTVLEAL 447 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115 + LE V N F+R VL + + + T++ + L ++ E Sbjct: 448 RPILERDRYPKVLQNVKFDRLVL-RTQGIKLA-GVVMDTMLASYVLNPDNSHNLNSLTER 505 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 +++ K+L + K + + YC V T ++ +L Sbjct: 506 Y-FPQIQLKSYKDL------------KIPKGKTIAELSSKTVANYCGMQVYATFKLVPKL 552 Query: 176 EPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 EQ L + + +G +D A L++ ++ + ++Q Sbjct: 553 REKLEAIPAIEKLLLEVEQPLEPVLAQMEYQGIRIDTAYLKELSESLEKKLVDIEQNAYK 612 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNN 279 + ++L LF + L + +T L + P + + Sbjct: 613 QAG-EEFNLGSPKQLSELLFEKLNLDRRKSRKMKTGYSTDHATLEKLQGDHPVIDTILEH 671 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ ++ L + ++ D + T + TGR S QN+P + Sbjct: 672 R-TLSKLKSTYVDALPKLVHKDTQRIHTDFNQTITSTGRLSSSNPNLQNIPIRTA----- 725 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 S +R + G LV AD + IE R+LA ++ E + Sbjct: 726 --------------------FSRQIRKAFLPESGWLLVSADYSQIELRILAHLSQEPVLV 765 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 + + +D++ T F VT ++R +GK + + Y G + F + A + Sbjct: 766 ETYRNNQDIHAVTAKLLF--EKETVTPEERRLGKTINFGVIYGMGPQRFAREA-----GV 818 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + + + M+ + + +G + + + +S Sbjct: 819 SAAEGKEFIDRLKQRYPKVFGYLEQMKGDAIAKGYVETILGR------RRYFEFNSN--- 869 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + K KN + L + Sbjct: 870 ----------------------------RLRDAKGKNPQEIDL------------DEFKG 889 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCE 635 + L R +Q S DI+ M+ + ++L VHDE+V E Sbjct: 890 IGQYDSGLLRAAANAP------IQGSSADIIKIAMVKMHEVLQDYQARLLLQVHDELVFE 943 Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 P + + M S +PL + E + + Sbjct: 944 VPPDEWEELQPKIRETMESAVE--LTVPLVVDVSEGENWM 981 >gi|308272139|emb|CBX28746.1| DNA polymerase I [uncultured Desulfobacterium sp.] Length = 912 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 111/706 (15%), Positives = 205/706 (29%), Gaps = 165/706 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL--- 57 +D ET S L ++ + + H +P+ L Sbjct: 334 NHFALDTETTSENPLK----------AKLVGISVSLKANEAFYIPLAHKYEGVPKQLDMN 383 Query: 58 ------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SA 108 K EN D+ + N ++ VLK +DI + T++ + Sbjct: 384 ETLNMLKGVFENPDIKKIGQNIKYDWIVLKRH-GIDIA-GVYSDTMIASYLINPSKRAHN 441 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 L + G + I E Y D +T Sbjct: 442 LDQIAL--------DFLGHKKITF----EETVGKKKPESGFSNVPLEKAVSYACEDADIT 489 Query: 169 REIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 L P + E L + + +G CVD L++ + + L Sbjct: 490 LMAHDVLFPKLLEIGLKDLFENIEMPLIPVLMKMEIKGICVDRNRLSELSKHFEQQIEDL 549 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTPQA 273 ++ + S+ + + ++L LF + L ++ +T VL+ + Sbjct: 550 EENIYSVAGMT-FNIKSPQQLGEVLFEKLMLPVKKKTKKKTGYSTDVDVLTELAQNHELP 608 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 V +R S+ + L+E + + T + TGR S QN+P + Sbjct: 609 ALVLRHR-TLSKLKSTYTDALLEIADPETERIHTSFNQTVTATGRLSSSNPNLQNIPVKT 667 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 E +RS + +G KL+ AD + IE R+LA A Sbjct: 668 DEGRE-------------------------IRSAFVPKKGWKLLSADYSQIELRLLAHCA 702 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF ED++ T F + P +T + R K + + Sbjct: 703 EDEILINAFLEDEDIHTRTAIEIFQIFPEFITPELRYQAKTIN--------------FSI 748 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ + + + + + Sbjct: 749 MYGIS------------------------------AFSLSKDLGISQKMAQTYINNYFAR 778 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + + N K GR + D+ Sbjct: 779 YKEVKRF---IDKTISDAHVNKKTSTLL-----------------------GRIRLLPDI 812 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLT 627 ++ + R +Q + D++ M+N KA ++L+ Sbjct: 813 DSSNKIV---IAAAERIA------VNTPIQGTAADLIKIAMINIDKAFTEKKLKAAMLLS 863 Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E P + S L M N W +PLK + + Sbjct: 864 VHDELVFEVPPDELDMVSDLVKNMMENV-WTLKVPLKVNISSGENW 908 >gi|260753224|ref|YP_003226117.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552587|gb|ACV75533.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 921 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 104/713 (14%), Positives = 208/713 (29%), Gaps = 175/713 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---------- 52 + +D ET + A ++ + + C H Sbjct: 340 QVAVDTETDNLD----------ATQARLVGVSLSTEAGKACYIPCGHGGHDLLDQKPDQM 389 Query: 53 ----MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-- 106 + + LK LE+ + + N ++ VL I + + T++L+ Sbjct: 390 DLSLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRY---GISVQPFDDTMLLSYDLDAGRH 446 Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 + + + I+ + Y D Sbjct: 447 GHGMDELSLLY--------FDHQPISFKS----VCGTGKSAITFNHVPIPAATRYAAEDA 494 Query: 166 TVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 +T ++ L+P ++ L + + G VD H L+ + Sbjct: 495 DITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSRFAHDI 554 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271 ++L++E+ L ++L LF GL +++ T L Sbjct: 555 SRLEEEIYVLAGCR-FLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERLAAEGE 613 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + S+ + L+ +N + T L ++TGR S QN+P Sbjct: 614 VIASKILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLVGAQTGRLSSTDPNLQNIPI 673 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + E +R+ IA +G L+ AD + IE R+ A Sbjct: 674 RTEIGRE-------------------------IRNAFIAKKGHLLLSADYSQIELRLAAH 708 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +A E+ L+AF+ ED++ T + F V ++ RA K + A+ Y Sbjct: 709 VADEKALLQAFQEKEDIHALTAKQLFGH----VDRESRARAKTINFAILY---------- 754 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ A ++ + + + + Sbjct: 755 ----GISAWGLAARLEIDRFS------------------------------AQEMIDRYF 780 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ + + + + P GR Sbjct: 781 ERFPAIRHYIDRTLDFVR--------------------------LHGYVETPFGRKTHLP 814 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGY---DI 624 + + + R+ +Q +S DI+ M+ KAG + Sbjct: 815 AIKSRKVTERQA---AERQAINAP------IQGMSADIIKRAMVRMEPALAKAGLSSVKM 865 Query: 625 VLTVHDEIVCETPDTDEFNAS-MLYHLMTSN--PSWAKGLPLKAEGYESKRYR 674 +L VHDE++ E P+ D A ++ +M P + L+ E + Sbjct: 866 LLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIVQLSVDLEVEIGTGTSWG 918 >gi|46445857|ref|YP_007222.1| DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25] gi|46399498|emb|CAF22947.1| probable DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25] Length = 891 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 114/702 (16%), Positives = 216/702 (30%), Gaps = 163/702 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC---VHDPVMPQVLK 58 + +D ET L + ++ G + ++ + LK Sbjct: 322 KEICLDTETTDLRPL----------EAQLVGIGLGVEPKKAWYIPLNGQLNGDFVLSQLK 371 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLP---SALKAVGE 114 LEN + HN ++ VL+ +I + T++ + +L + Sbjct: 372 PLLENPSIGFYGHNFKYDYHVLRNH---NISVANISFDTILASYLLNSHKRQHSLDHLA- 427 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L+L + +ELI A YC DV T + Sbjct: 428 -LELFDKVKIAIQELI----------GKGKNQLNMKNVALDKICHYCCEDVDYTIRLKNI 476 Query: 175 LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L + + L + + G +D A L+Q + E L+Q + + Sbjct: 477 LLSQLEERKLTSLLFDLELPLLSVLAQMERNGIFIDTAYLKHLSQFIGQEIHCLEQNIYA 536 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 L + + ++L LF + G+ +T VL K + P A ++ R Sbjct: 537 LAG-EIFNLNSPKQLSQILFHKLGIKPPKKIATGHSTNAEVLEILKHVYPIAEKLLEYR- 594 Query: 282 RASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + +N+L +N GR+ A+ TGR S QN+P + Sbjct: 595 TLEKLRSTYVNSLPLQVNAKTGRIHCNFNQSMAA-TGRLSCQDPNLQNIPVRTEVGR--- 650 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R E + AD + IE R+LA ++ + + Sbjct: 651 ----------------------QIREAFRPEKEDWSYLSADYSQIELRLLAHLSEDPVLI 688 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 KAF + ED++ T + F+V QV+ +QR K + L Sbjct: 689 KAFLSNEDIHKYTASLIFDVPLQQVSSEQRYQAKAVNFGLI------------------- 729 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + A E + + +++ +V E Sbjct: 730 -------------------------YGQQAFGLAHELGIDTKTAAAFIQRYFERYGKVKE 764 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 Q+ +T GKA+ GR + ++ + + Sbjct: 765 FLEACKQSARET---GKAVTMY-----------------------GRERLLPEIRSQNAM 798 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633 + T + +Q D++ M+ K ++L +HDE++ Sbjct: 799 IRATADRF---------AVNTPIQGTQADLIKMAMLKINKLLIQEKKKGFMILQIHDELI 849 Query: 634 CETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 E P+ + + S L M + +PL + K ++ Sbjct: 850 FEVPNQELESISHLVKNTMENII--NLKVPLIVNIHIGKNWK 889 >gi|124266340|ref|YP_001020344.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] gi|124259115|gb|ABM94109.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] Length = 937 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 115/701 (16%), Positives = 210/701 (29%), Gaps = 156/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 + +D ET S + ++ +F + H Sbjct: 360 DLVALDTETDSLDGMR----------ARIVGLSFSVQPYEACYIPLAHTYPGAPDQLPLD 409 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSAL 109 + LK LE+ + N ++ V + + + TL+ + P +L Sbjct: 410 EVLAALKSWLEDGSRAKLGQNVKYDTHVFANH-GIAVRGY-VHDTLLQSYVLEAHKPHSL 467 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 +++ L + E + P + EY D +T Sbjct: 468 ESLASRH------------LDRKGLSYEDVAGKGAQQIPFAQVELTRATEYSGEDSDMTL 515 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L P E + I G +D AL + + L Sbjct: 516 DVHRVLWPQLEAAPRLREVYERIEMPTSVILGRIERHGVLIDSALLARQSADLAQRMVAL 575 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAI 274 +QE +L + +++ LF + G+ + T +T + VL+ P Sbjct: 576 EQEAHALAGQP-FNLGSPKQIGEILFNKLGIPAKKKTASGAPSTDEEVLAELAADYPLPA 634 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ +R ++ + L +N+ GR+ A TGR + QN+P + Sbjct: 635 KLLEHR-SLAKLKGTYTDKLPLMVNAATGRVHTNYAQAVA-VTGRLASNDPNLQNIPIRT 692 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 VR IA G ++ AD + IE R++A ++ Sbjct: 693 PEGRR-------------------------VREAFIAPPGHVILSADYSQIELRIMAHIS 727 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + LKAF G D++ T + FNV A+V+ +QR KV+ L Y GA Sbjct: 728 EDPGLLKAFAEGLDVHRATASEVFNVPVAEVSSEQRRYAKVINFGLIYGMGA-----FGL 782 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + L + A + + + + + E + G R Sbjct: 783 ASNLGIEQKAAKDYIDRYFARFAGVKRYMDETRARAKELGYVETLFGR---------RIY 833 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +G Sbjct: 834 LPEING-------------------------------------------GNGPRRT---- 846 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 G R +N + KL VQ ++A + +V+ VHDE+V Sbjct: 847 GAERQAINAPMQG---TAADLIKLAMIAVQ---------AALDAQQRATCMVMQVHDELV 894 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P+ + A + LM +PL AE + Sbjct: 895 FEVPEAELDWARTAVPELMAGVAE--LKVPLLAEVGVGANW 933 >gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] Length = 930 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 95/701 (13%), Positives = 208/701 (29%), Gaps = 160/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL--- 57 + D ET L ++ +F + +++ Sbjct: 357 KSFCFDTETTGLDALV----------ADIVGLSFAIEKGKAYYVPTPDSREQALEIINIF 406 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K LE+ + + N ++ +L ++ + T++ + + E Sbjct: 407 KPILEDPAIQKIGQNIKYDILLLSRY-DVKVK-GALFDTMLAHYLIDPDTRHGMDVLAE- 463 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 +LI + L EY D +T ++ ++ Sbjct: 464 -NYLGYIPVSITKLIGE---------KGKKQGNMRDVEIELIKEYASEDADITLQLKEKF 513 Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 EPL + E L Y+ I G +DV + ++ ++ + L+ + Sbjct: 514 EPLLEETATLKLAQEVEFPLVYVLSEIEKNGVKIDVDVLSVFSKTIEEDVRNLEASIYEK 573 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280 + ++L LF + L + T+ T + VL + + + + R Sbjct: 574 AGVK-FNIASPKQLGEVLFDKLQLDPKAKKTKTGQYKTGEDVLLTLANKSDIVQDILDFR 632 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L +N + L T + TGR S QN+P + E Sbjct: 633 Q-LQKLKSTYVDALPSLINPNTGLIHTSYNQAVAATGRLSSTNPNLQNIPIRTERGRE-- 689 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 VR I E ++ AD + IE R++A ++ + L Sbjct: 690 -----------------------VRKAFIPRSENNVILSADYSQIELRLMAELSQDANML 726 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ G D++ T A+ + + +V+ DQ Sbjct: 727 EAFQKGYDIHRATAAKVYGLELDEVSSDQ------------------------------- 755 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A NF ++ + + + Q++S + + Sbjct: 756 -------------RRNAKAVNFGIIYGQSAFGLSQSLGIPRREAADIIDQYFQQYSGIRD 802 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + ++ N + R RD+ + Sbjct: 803 YMSKAIASAKE--------------------------NGFVETILKRRRYLRDINSANM- 835 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633 T R +Q + D++ M+ + +++ VHDE+V Sbjct: 836 --TVRGFAERNAINAP------IQGSAADMIKVAMLRIQEDIEEQQLAGKMIMQVHDELV 887 Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + P + ++ + M + +P++ E + K + Sbjct: 888 FDVPLDEVEKFKTLIQNRMKTAIP--MQVPIEVEIGQGKNW 926 >gi|326561447|gb|EGE11797.1| DNA polymerase I [Moraxella catarrhalis 46P47B1] Length = 959 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 105/716 (14%), Positives = 208/716 (29%), Gaps = 178/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 ID ET + ++ + D+ H Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106 + K LEN ++ + + ++ + K ++I + T++ + Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + A+ + L + E + + A +Y D Sbjct: 481 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDAD 528 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVER 215 +T +F R ++++ L + G +D L+ D + Sbjct: 529 ITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 588 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271 L E E + + ++L LF + G+ T+T T + VLS P Sbjct: 589 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 645 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 V +R S+ +TL A + GR+ + + TGR S QN+P Sbjct: 646 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 703 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + + +R IA +G+ ++ AD + IE R++A Sbjct: 704 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 738 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +G++ ++AF D++ T A ++VT +R K + Sbjct: 739 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF-------------- 784 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ A + + A + K + Sbjct: 785 GLLYGMSAFGLAKQIGVDRAV------------------------------AQDYIKRYF 814 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ + E +Q + GR L Sbjct: 815 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 848 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627 D+ ++ + R Q + +I+ M+ K ++L Sbjct: 849 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 899 Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673 VHDE+V E D +++ M + + WA +PL E + + Sbjct: 900 VHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955 >gi|302344810|ref|YP_003813163.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845] gi|302150181|gb|ADK96443.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845] Length = 920 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 99/698 (14%), Positives = 199/698 (28%), Gaps = 159/698 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59 + ID ET S ++ ++ +F ++ + + Q+ K Sbjct: 350 VSIDTETTSTDAIS----------AELVGLSFSVEEKKAFYVAVPANYEEALKIVQIFKP 399 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALK 117 E+ + + N ++ VL + + + T++ + + E L Sbjct: 400 LYESDKIMKIGQNIKYDYEVLTRY-GVTLQ-GKMFDTMIAHYLIQPELHHNMDYMAETL- 456 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 G + I E + K + EY D +T + LEP Sbjct: 457 -------LGYQTIH---IEELLGPKGKKQKNMRDLSPTDIYEYAAEDADITLRLKNVLEP 506 Query: 178 LSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E L + + G C+D ++I + +QE+ Sbjct: 507 RLKELGVEELFWNIEMPLVRVLADMELNGVCLDTEALQDTSKIFTERMKQYEQEIYKEAG 566 Query: 228 GLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 + +++ LF + + T+T T + VL S + +P + N R Sbjct: 567 -EEFNISSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLESKSPIVRNILNYR-G 624 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + ++ L + +N T + TGR S QN+P + +E Sbjct: 625 MKKLLSTYIDALPKLINPRTGHIHTSFNQALTATGRLSSSDPNLQNIPVRTDDGKE---- 680 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R C I +G AD + IE R++A ++ ++ ++AF Sbjct: 681 ---------------------IRKCFIPEDGCLFFSADYSQIELRIMAHLSEDENMMEAF 719 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ T A+ ++V +VT QR K + G+ Sbjct: 720 REGHDIHRATAAKIWHVDIDKVTDAQRKKAKQANFGII--------------YGITTYGL 765 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + + + + + + +V Sbjct: 766 AQRMDI------------------------------PNGEAKELIEGYFRTFPKVQVYME 795 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + R D+ + + T Sbjct: 796 HAKEVAR--------------------------AKGYAETLFHRRRYLADINSRNA---T 826 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 R +Q DI+ M+ + ++L VHDE+ Sbjct: 827 VRGFAERNAINAP------IQGTEADIIKVAMVRIWERFKKEGIRSKMILQVHDELNFSV 880 Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + + +PL A+ K + Sbjct: 881 FPEEREQVERIVIEEMQNA--YPLNVPLIADAGWGKNW 916 >gi|71901491|ref|ZP_00683578.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71728747|gb|EAO30891.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 712 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 262/713 (36%), Positives = 355/713 (49%), Gaps = 63/713 (8%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L+ D ET SP+ + G+ YAE ++LFA+ D PV++WDC MP+ L AL Sbjct: 10 ILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALH 68 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121 N V + HNS+F+RTVL ++IP+ RW ++ A ++ LP AL + E L++ + Sbjct: 69 NPAVLLYFHNSHFDRTVL-RHCGINIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQ 127 Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++GK L+A FCK C R + H W F +Y + DVT R++ KRL + Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSHN 187 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 EL W+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L L E G+ L D+ + T +R L + L ++ + R +AS ++ K L+ Sbjct: 248 ALLHHLSTEHGVVLPDMQQHTVERCL-DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S + I + D Sbjct: 307 TSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDD 366 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL------- 408 + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL+AF + Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTW 426 Query: 409 ---------------------------------YVTTYARSFNVAPAQVTKDQRAIGKVM 435 Y YA SF +AP VTK+QR IGKV Sbjct: 427 HSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQ 486 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 ELALGY GG AF A+ ++L A P + A +W + NH Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL--PPLLLQQAVEALQWTKANHRPTFGL 544 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 AC+ K+AWR H ++ W L A I + + + ++ + Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599 Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDI 609 L + LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+ Sbjct: 600 AWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLP 662 LA M AGY IVLTVHDEI+ E D FNA+ L LM + P +G P Sbjct: 660 LAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPGHRGCP 712 >gi|71064954|ref|YP_263681.1| DNA polymerase I [Psychrobacter arcticus 273-4] gi|71037939|gb|AAZ18247.1| DNA polymerase I [Psychrobacter arcticus 273-4] Length = 956 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 100/719 (13%), Positives = 199/719 (27%), Gaps = 181/719 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------------DPV 52 ID ET S Y ++ +F H H Sbjct: 364 IDTETTS----------VYWRQAELVGLSFAVQAHEAYYIPLTHSLEGDELTEKQLDRDT 413 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKAC-----FNLDIPIHRWI-CTLVLARSNGL- 105 + LK LEN+ + + + ++ +L N+ + W T++ + Sbjct: 414 VLVRLKSILENSSIGKIGQHLKYDAHILSLYDINLLGNIHDKPNNWAMDTMLASYVINAA 473 Query: 106 --PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 + + L + E + + A + +Y Sbjct: 474 VTRHGMDDLARHY------------LQTQTISFEDVAGKGAKQVSFDQVAIDIASDYACE 521 Query: 164 DVTVTREIFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D +T ++F+ + + + + G + + L++ D Sbjct: 522 DADITYQLFELFSQKLADDTNNAKLLHALEIPTAEILCQMEAHGILIKRPFLNELSKRFD 581 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKK 268 E L++ + + ++L LF + G+ T+ +T + VLS Sbjct: 582 EEIIALEKRAYEVAG-EEFNLGSPKQLGEMLFDKLGVAGGKKTKTGQYSTGEAVLSKI-- 638 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 P R S+ + L +S+ T + TGR S QN Sbjct: 639 DHPLVDITLEYR-GLSKLKSTYTDALDNVADSETDRVHTSYHQALTSTGRLSSTDPNLQN 697 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +P + + +R IA EG+ ++ AD + IE R+ Sbjct: 698 IPIRTATGR-------------------------LIRQAFIAPEGRVILAADYSQIELRL 732 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A +G++ AF G D++ T A A VT +R K + Sbjct: 733 MAHFSGDKNLTHAFNEGLDIHAATAAEVLGKEVADVTATERRNAKAINF----------- 781 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 G++ A ++ + + Sbjct: 782 ---GLLYGMSAFGLAKQLQM------------------------------SRSEAQDYID 808 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +++ V + + + + + GR L Sbjct: 809 MYFERYPGVKDYMINTRASAYE--------------------------HGYVETILGRKL 842 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDI 624 D+ ++ + R Q + D++ M+ K + Sbjct: 843 YTPDINHSNRMVKQ---GAERAAINAPL------QGSAADLIKLAMIAVDKVLPKHQAKM 893 Query: 625 VLTVHDEIVCETPDTDEFNASM-LYHLM-----TSNPS--WAKG--LPLKAEGYESKRY 673 +L VHDE+V E S + M + W +PL E + + Sbjct: 894 LLQVHDELVFEVDANKVDEISQLITDAMQNVLTATAVEKGWNVNFAVPLLVETDSGQNW 952 >gi|198284771|ref|YP_002221092.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665686|ref|YP_002427456.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249292|gb|ACH84885.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517899|gb|ACK78485.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270] Length = 899 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 112/709 (15%), Positives = 203/709 (28%), Gaps = 170/709 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQ--- 55 + +D ET S L ++ + + D+ H PQ Sbjct: 319 DVVALDTETTSLDPL----------HADLVGISCAWQAGGDYQAVYVPVGHRDAGPQLDR 368 Query: 56 -----VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-- 108 L+ LE+ +A N+ ++ V + P TL+ + Sbjct: 369 QTVLTALRPWLEDPQAAKLAQNAKYDWRVFWRH-GIH-PAGLARDTLLESYVLNSSHNGH 426 Query: 109 -LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L + E + I E + Y D V Sbjct: 427 DLDTLAERY--------LQHQNIRY----EEVVGKGKSARNFADVPVAEALPYAAEDADV 474 Query: 168 TREIFKRLEPL-----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 + L P E L + + + G +D A L+ + + Sbjct: 475 CLRVDALLWPRFASEPGLRRVLMEIEMPLVLVLARMEEAGVKIDRAQLEVLSTELSRDMA 534 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQ 272 +Q+ L + ++++ LF + L + T +T + VL+ Sbjct: 535 DCEQKAFVLAGQS-FNLNSPKQIQEILFDKMRLPVLKKTPGGQPSTNEDVLAQLAVHADL 593 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + + R ++ + L + +N D GR+ Q A+ TGR S QN+P Sbjct: 594 PRLILDYR-GMAKLKNTYADALPQMINPDTGRVHTHFQQAVAA-TGRLSSNDPNLQNIPV 651 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + +R +A EG L+ AD + IE R+LA Sbjct: 652 RTEQGRR-------------------------IRQAFVAEEGHWLLSADYSQIELRILAH 686 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++G+ L+AF GED++ T A F++AP V R K + Sbjct: 687 LSGDARLLQAFAEGEDIHAVTAAEVFDLAPEDVDSAARRAAKAIN--------------F 732 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G A + + A A + + Sbjct: 733 GLIYGQTPYGLAQQLGIDQA------------------------------AARQYMDRYF 762 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 +++ V E + ++ + GR L Sbjct: 763 ERYLGVLEYMAQTRALAKK--------------------------QGYVETLFGRRLYVP 796 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIV 625 ++ ++ T R +Q + D++ M+ ++ Sbjct: 797 EIRSSNPARRTY---AERAAINAP------MQGTAADLIKMAMIAVDAWLQERPERGRMI 847 Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 L VHDE++ E P+ A L M A +PL K + Sbjct: 848 LQVHDELILEVPEAGLEAAKSALKARMEGVAELA--VPLLVGLGIGKHW 894 >gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345] gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345] Length = 918 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 105/700 (15%), Positives = 207/700 (29%), Gaps = 156/700 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMP---- 54 + ID ET S Y E ++ +F + HD + Sbjct: 341 IAIDTETTSLN---------YME-AKLVGISFAVEAGKAAYLPLEHDYVDAPEQLDRALV 390 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALK 110 + L+ LE+ ++ V N ++ ++ + + + T++ + + Sbjct: 391 FEKLQPLLEDENLKKVGQNLKYDISIFAN-IGITLRGVQ-FDTMLESYVFNSVASKHNMD 448 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + G + I+ E + ++ Y D +T Sbjct: 449 DLALKY--------LGHKNISF----EEIAGKGVKQLTFNQIPLETAAPYAAEDADITLR 496 Query: 171 IFKRLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L K EL + I +G +D L ++ + + +L+ Sbjct: 497 LHQHLWSRLEKLPELASVFTDIELPLVNTLSNIERQGVLIDSMLLGQQSEELARKIDELE 556 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 + + + ++L+ F + G + T +T + VL P Sbjct: 557 HKAHEIAG-EPFNLSSPKQLQALFFEKLGYPVIKKTPKGAPSTAEEVLVELALDYPLPKI 615 Query: 276 VFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R ++ + L +N GR+ + A+ TGR S QN+P + Sbjct: 616 ILEHR-SLAKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTE 673 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA EGKK++ AD + IE R++A ++ Sbjct: 674 EGRR-------------------------IRHAFIAPEGKKILAADYSQIELRIMAHLSQ 708 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L AF G+D++ T A F+V ++VT DQR K + L Y A Sbjct: 709 DTGLLTAFAEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMSA-----FGLA 763 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L++ ++ + + + + + G R Sbjct: 764 KQLDIPRAEAQSYIDTYFKRYPGVLKYMEETRAIAADLGYVSTLFGRRLYLPAIKDRNAM 823 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R +A G A K+ Sbjct: 824 RR-----QAAERAAINAPMQGTAADIIKK------------------------------- 847 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + E Q +I+ +++ VHDE+V Sbjct: 848 ---------------AMINIAQWIETETQG---EII-------------MIMQVHDELVF 876 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + + + + LM + + L AE + Sbjct: 877 EVDEAKADSLQAKVCELMAAAAK--LDVELLAEAGIGDNW 914 >gi|241763714|ref|ZP_04761762.1| DNA polymerase I [Acidovorax delafieldii 2AN] gi|241367019|gb|EER61404.1| DNA polymerase I [Acidovorax delafieldii 2AN] Length = 926 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 118/700 (16%), Positives = 212/700 (30%), Gaps = 155/700 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL----- 57 + +D ET S ++ ++ +F H P P+ L Sbjct: 352 VALDTETTSLDEMR----------AEIVGISFSVQPGEAAYIPLAHTGPDAPEQLPLGEV 401 Query: 58 ----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKA 111 K LE+ + + ++R V ++D+ + T++ + + P L + Sbjct: 402 LARLKPWLEDARYPKLGQHVKYDRHVFANH-DIDVRGY-VHDTMLQSYVLEVHKPHGLAS 459 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E G+ I+ E P + Y D T ++ Sbjct: 460 LAERH--------TGRTGISY----EDLCGKGAHQIPFAQVPVDKAAAYSCEDSDQTLDV 507 Query: 172 FKRLEPLSSKEQELWYL----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 L PL + +L ++ I G +D + + +L+ E Sbjct: 508 HLALWPLLQADDKLRFIYELEIASSEALYRIERNGVLIDAPTLAQQSHELGQRILQLETE 567 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + + ++L F + G+ + T +T + VL + P ++ Sbjct: 568 AYEIAGQP-FNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLL 626 Query: 278 NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R ++ + L + GR+ A TGR S QN+P + Sbjct: 627 EHR-SLTKLKGTYTDKLAQLALPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPIRTAEG 684 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 VR +A G + AD + IE R++A ++G+ Sbjct: 685 RR-------------------------VREAFVAPPGCVIASADYSQIELRIMAHISGDH 719 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G D++ T A F VA QVT +QR KV+ L Y Sbjct: 720 ALLHAFHAGLDVHRATAAEVFGVALDQVTSEQRRYAKVINFGLIYGMS-----SFGLAKN 774 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L + T A + + + + + + + G R Sbjct: 775 LGIETKAAAAYIDRYFQRYPGVKQYMDETKAQAKARGYVETVFGR---------RLYLPE 825 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 ++ P+G G Sbjct: 826 INS-------------------------------------------PNGPRRA----GAE 838 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 R+ +N + KL VQ E ++A K G +++ VHDE+V E Sbjct: 839 RAAINAPMQG---TAADLIKLAMVAVQ-------KE--LDAHKPGIKMIMQVHDELVFEL 886 Query: 637 PDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P+ + + LM A +PL AE + K Sbjct: 887 PEGEVDWLRGHIPRLMAEVA--ALKVPLLAEVGVGANWDK 924 >gi|189499514|ref|YP_001958984.1| DNA polymerase I [Chlorobium phaeobacteroides BS1] gi|189494955|gb|ACE03503.1| DNA polymerase I [Chlorobium phaeobacteroides BS1] Length = 936 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 105/700 (15%), Positives = 200/700 (28%), Gaps = 164/700 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEA 60 ID ET S + ++ + + P L++ Sbjct: 366 SIDTETTSLN----------TFEAELVGISICWKPGEAYFIHFTDKELSAKTFPGKLQDV 415 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 LEN D+ N ++ VLK P+ T++ + L + + Sbjct: 416 LENPDIKKTGQNLKYDILVLKNHHVRLAPVG--FDTMLASYVINPEEKHNLDDLAK---- 469 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 K L R + P Y D V ++ ++ + L Sbjct: 470 --------KHLNHRTITYSELTGTGKKAIPIREVPIDRLTVYACQDADVALQLEQKQKIL 521 Query: 179 S-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + E L + + G +D A + V+ + +L + + T Sbjct: 522 LGENSELEQLCVNIEFPLVEVLADMEYLGIALDTAQLERTAETVNRQLLELTERIYD-TA 580 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 G + + ++L LF GL + T+ +T +VL + P A + R Sbjct: 581 GTIFNIDSPKQLGNVLFNVLGLPAKKTTKTGFSTNVQVLEDLSLIHPVAKDLLEYR-SLQ 639 Query: 285 RSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + ++ L + +N GR+ + + TGR S QN+P + E Sbjct: 640 KLKTTYIDALPKILNPKTGRVHTSFNQHI-TATGRLSSSNPNLQNIPIRTPLGRE----- 693 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R I S + L+ AD + IE R+ A ++ + + AF Sbjct: 694 --------------------IRKAFIPSTSDRYLLSADYSQIELRIAAEISQDSHLIDAF 733 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 ED++ T F+ +TKD R G+ Sbjct: 734 RNREDIHTATAKTIFDT--DDITKDMRRKA--------------KEVNFGVLYGIQPYGL 777 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + + + K+ L++ Sbjct: 778 AQR------------------------------LNISQKEAKAIIDTYISKYPG---LFS 804 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 L + E G +GR ++ + Sbjct: 805 ALQTTITEAAEKGYVTTL-----------------------TGRRRYIENLRSRN---RN 838 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCET 636 R +Q + DI+ M + + ++L VHDE+V ET Sbjct: 839 IRMAAERAAMNTP------IQGTAADIIKCAMGLVSEAIKKKRMQSAMLLQVHDELVFET 892 Query: 637 PDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEGYESKRY 673 + ++ + + M + +P++ E K + Sbjct: 893 TEEEKAALAEIAEGCMQKAAELCGLETVPVEVEIGTGKNW 932 >gi|326576276|gb|EGE26191.1| DNA polymerase I [Moraxella catarrhalis CO72] Length = 956 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 105/716 (14%), Positives = 209/716 (29%), Gaps = 178/716 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 ID ET + ++ + D+ H Sbjct: 370 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 419 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106 + K LEN ++ + + ++ + K ++I + T++ + Sbjct: 420 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 477 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + A+ + L + E + + A +Y D Sbjct: 478 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDAD 525 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVER 215 +T +F R ++++ L + G +D L+ D + Sbjct: 526 ITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 585 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271 L E E + + ++L LF + G+ T+T T + VLS P Sbjct: 586 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 642 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 V +R S+ +TL A + GR+ + + TGR S QN+P Sbjct: 643 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 700 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + + +R IA +G+ ++ AD + IE R++A Sbjct: 701 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 735 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +G++ ++AF D++ T A ++VT +R K + L Sbjct: 736 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLL----------- 784 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ A ++ + A + K + Sbjct: 785 ---YGMSAFGLAKQIEVDRAV------------------------------AQDYIKRYF 811 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ + E +Q + GR L Sbjct: 812 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 845 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627 D+ ++ + R Q + +I+ M+ K ++L Sbjct: 846 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 896 Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673 VHDE+V E D +++ M + + WA +P E + + Sbjct: 897 VHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPFVVEIGIGENW 952 >gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3] gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3] Length = 922 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 103/697 (14%), Positives = 196/697 (28%), Gaps = 152/697 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 +D ET S + ++ +F + HD Sbjct: 346 AVDTETTSLDYMV----------AELVGLSFAVEAGKAAYLPLAHDYVGAPQQLDKQTAL 395 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113 + L+ LE+ + V N ++ +VL + + T++ + ++ G Sbjct: 396 EKLRPLLEDAKIKKVGQNLKYDISVLANA-GIKLQ-GVVFDTMLESYVFNSIASRHDMDG 453 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 ALK K ++ + ++ Y D +T + + Sbjct: 454 LALKYLGHKNIAFED----------IAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQ 503 Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E L + I +G +D L + + + +L+ + Sbjct: 504 HLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETKA 563 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ F + G + T +T + VL P + Sbjct: 564 YDIAG-EKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLPKVILE 622 Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R ++ + L +N GR+ + A+ TGR S QN+P + Sbjct: 623 HR-SLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEGR 680 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R IA +G+K++ AD + IE R++A ++ + Sbjct: 681 R-------------------------IRQAFIAPQGRKILAADYSQIELRIMAHLSQDAG 715 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 LKAF G+D++ T A F VT +QR K + L Y A L Sbjct: 716 LLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSA-----FGLARQL 770 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 ++ ++ + + + + E G + R R Sbjct: 771 DIPRNEAQTYIDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRR- 829 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +A G A K+ + + K + Sbjct: 830 ----QAAERAAINAPMQGTAADIIKKAMISIADWIKTDTQGEI----------------- 868 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 M+ + VHDE+V E Sbjct: 869 -----------------------------------AMI----------MQVHDELVFEVD 883 Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + LM + L AE + Sbjct: 884 ADKAETLKLKVCELMAKAA--NLDVELLAEAGIGDNW 918 >gi|91217029|ref|ZP_01253992.1| DNA polymerase I [Psychroflexus torquis ATCC 700755] gi|91184900|gb|EAS71280.1| DNA polymerase I [Psychroflexus torquis ATCC 700755] Length = 942 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 104/706 (14%), Positives = 226/706 (32%), Gaps = 166/706 (23%) Query: 1 MAT--LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMP 54 M + D ET S L D ++ AF ++ H D + Sbjct: 366 MKQNSVCFDTETTSLKTL----------DAELVGIAFSWESHKGFYVAFPEDQNEAQELV 415 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLP--SALKA 111 + L+ E+T++ V N ++ VL + + T++ + Sbjct: 416 EKLRPFFESTEIEKVGQNLKYDIKVLANY---KLKVKGPLFDTMLAHYIINPDMRHNMNI 472 Query: 112 VGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + E L S Q + ++LI + R K + +Y D +T + Sbjct: 473 LAETYLNYSPQPI---EDLIGK---------KGKRQKTMRTVSLEDQTQYAVEDADITFQ 520 Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + E E L + + G +D + +++ +D + +L++ Sbjct: 521 LKTYFEKELKEASNEPLFKDMEIPLLRVLAAMEIEGINLDKSALENISEKLDEDIERLEK 580 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQ 275 + + + ++L LF + + T++ T + VLS+ K + Sbjct: 581 SVY-VEAEGEFNIGSPKQLGEILFGKLEIAKKPKKTKSGQYSTGEEVLSNYAKDHKIVRE 639 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 V + S+ ++ L + ++ + T + TGR S QN+P + Sbjct: 640 VL-EWRQLSKLKSTYVDALPKQIHPRTKRVHTEFMQTVAATGRLSSNNPNLQNIPIRTER 698 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394 E VR + E L+ AD + IE R++A ++ Sbjct: 699 GRE-------------------------VRKAFVPRDENYVLLAADYSQIELRIIAALSQ 733 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 E+ + AF+ GED++ +T AR F V +VT+ QR+ K + + Sbjct: 734 EKTMMNAFKNGEDIHASTAARVFGVDIEEVTRAQRSNAKTVNFGII-------------- 779 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ ++ + + + + + + Sbjct: 780 YGVSAFGLSNQTD------------------------------LTRNESKELIETYYKTY 809 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 ++ + +E + ++ + + GR +D+ Sbjct: 810 PKLRDYMDEQVEFAKE--------------------------HGYVKTVMGRRRYLKDIN 843 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 + + + +Q + DI+ M+N A ++L V Sbjct: 844 AKNHIVRSAAERN---------AVNAPIQGSAADIIKVAMINIYDALEEQNFKSKMLLQV 894 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE++ + + +++ M + +PL E + + Sbjct: 895 HDELIFDAHKDEIDALTALVKDKMENAFK--LDVPLDVEMGTGQNW 938 >gi|333029493|ref|ZP_08457554.1| DNA polymerase I [Bacteroides coprosuis DSM 18011] gi|332740090|gb|EGJ70572.1| DNA polymerase I [Bacteroides coprosuis DSM 18011] Length = 928 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 93/700 (13%), Positives = 208/700 (29%), Gaps = 159/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----L 57 + +D ET A + ++ +F + D + + Sbjct: 356 KEIALDTETTGLE----------AMEAEIVGISFSVKKNEAYYIPFPKDQEETKKRLNII 405 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K LEN + N ++ +LK +++ + + T++ + + E Sbjct: 406 KPLLENKKSLKIGQNIKYDLLILKNY-GIEV-VGKLFDTMIAHYVVQPELRHNMDYLAEI 463 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + ++LI K + Y D +T ++ + Sbjct: 464 Y--LNHITIPIEDLIG---------PKGKNQKSMRELSPEDVYIYACEDADITFQLKNAI 512 Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E + Q L + + G +D +L++ +++E+ L Sbjct: 513 EKDLKENQAEELFYTIEMPLVPVLTDMEYTGVLLDKKALKSLSKDFTDRLITIEEEIHKL 572 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + + T+T T + VL S K P ++ + R Sbjct: 573 ADND-FNVSSPKQVGEILFDKLKIDEKAKKTKTGQYVTSEEVLLSYKDKHPIVEKILDYR 631 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N T + TGR S QN+P +E Sbjct: 632 -GLKKLLSTYVDALPKLINKKTGKIHTSFNQTVTATGRLSSSNPNLQNIPIRDSDGKE-- 688 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I + AD + IE R++A ++ + ++ Sbjct: 689 -----------------------IRKAFIPDQDSLFFSADYSQIELRIMAHLSHDNNMME 725 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G+D++ T A+ + +T DQR K G+++ Sbjct: 726 AFLHGDDIHAATAAKVYKQDINTITSDQRRKAKTANF--------------GIIYGISVF 771 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A ++ + + + + + + +V E Sbjct: 772 GLAERMQVE------------------------------RKEAKELIEGYFETYPQVKEY 801 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 ++ + + R D+ + + + Sbjct: 802 MDQSIVEARE--------------------------KGYVETIFNRKRYLPDINSRNAVV 835 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 + R +Q + DI+ M+N K ++L VHDE+ Sbjct: 836 RGFS---ERNAINAP------IQGSAADIIKVAMVNIHKRFKEEKLLSKMILQVHDELNF 886 Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 +++ + M + + +PLKA+ + + Sbjct: 887 TVIPSEKEKVQQIVIQEMENA--YKLSVPLKADFGWGENW 924 >gi|220906286|ref|YP_002481597.1| DNA polymerase I [Cyanothece sp. PCC 7425] gi|219862897|gb|ACL43236.1| DNA polymerase I [Cyanothece sp. PCC 7425] Length = 982 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 104/700 (14%), Positives = 218/700 (31%), Gaps = 147/700 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVHDPV-------MPQVL 57 D ET + D ++ + P + H + L Sbjct: 395 DTETTALSP----------RDAQLVGIGCCWGPAPDQIAYLPLGHSQGGNLDLTLALEQL 444 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 + LE+ N+ ++R VLK + + T++ + + + K Sbjct: 445 RPLLEDARYPKAFQNTKYDRLVLK-FQGVHLQ-GVVFDTMLASYVLNPEGSHNLTDLSRK 502 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + +L+ ++ + + YC DV T ++ +L Sbjct: 503 YLDITAQSYTDLV-------------EKGQNLADLSVEAIANYCGLDVYATFQLVPKLRA 549 Query: 178 LS------------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 + EQ L + + G +D L+Q ++ + L++ L Sbjct: 550 DLLDANPKLLDLLLTVEQPLEPVLAIMETCGIRIDQDYLKQLSQQLEQDLHALEERAYGL 609 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNNR 280 + ++L LF + L ++ T+ +T L + P + +R Sbjct: 610 AG-ETFNLGSPKQLSELLFNKLKLDVKKSRKTKLGYSTDAATLEKMQGDHPVIDLILEHR 668 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 ++ ++ L + SD GR+ + TGR S QN+P + Sbjct: 669 -TLAKLKSTYVDALPNLVRSDTGRVHTDFNQAI-TATGRLSSSNPNLQNIPIRTE----- 721 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 S +R I G LV AD + IE R+LA ++ E + Sbjct: 722 --------------------FSRQIRKAFIPEPGWMLVTADYSQIELRILAHLSQEPRLV 761 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +A++ +D++ T + + ++R + K++ + Y GA Q+ A +G++ Sbjct: 762 EAYQQHQDVHKLTAQLL--LEKEDINPEERRLAKIINFGVIYGMGA---QRFARESGVSF 816 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + E + + + M+ + +G + + Sbjct: 817 --KQAKGFIDRFYERYPLVFRYLKQMEGQAIALGYVETLLGR------RRYFS------- 861 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + ++ L P ++ ++ Sbjct: 862 ------------------------------FDSRELQQLRGKDPD----SLAELDLSQLK 887 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCE 635 ++ R R +Q S DI+ M+ + ++L VHDE+V E Sbjct: 888 VSQYDRGQLRAAANAP------IQGSSADIIKVAMIKLQQRLQPYQTRLLLQVHDELVFE 941 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 P ++ S++ M +PL AE + + Sbjct: 942 MPPSEWEPLRSLIQATMAEAVP--LSIPLLAEIHAGPNWM 979 >gi|221236513|ref|YP_002518950.1| DNA polymerase I [Caulobacter crescentus NA1000] gi|220965686|gb|ACL97042.1| DNA polymerase I [Caulobacter crescentus NA1000] Length = 982 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 194/715 (27%), Gaps = 176/715 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------ 51 + D ET + + + H Sbjct: 395 VAFDTETDALSS----------ATAGLCGVSLAIAPGEACYIPISHCEKADGLAFEAPAD 444 Query: 52 -------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ V VA N+ ++ VL I + T++++ Sbjct: 445 IEQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH---GIQVAPIEDTMLISYVLE 501 Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E + G + I + A Y Sbjct: 502 AGLHGHGMDELSE--------LHLGHKPIPF----KQVAGSGKGQISFKHVALPEATAYA 549 Query: 162 KGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT ++ L+P ++ E+ + + + + G VD L+ Sbjct: 550 AEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMMENNGVRVDPEALRLLSNEF 609 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + + + + L + +++ LF E + T +T VL S Sbjct: 610 SLRMAQFEARAQELVGRP-FNLGSPKQIGDVLFGEMQMKGGKKTATGQWSTDSDVLESLA 668 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + R S+ L+ A+ T L A+ TGR S Q Sbjct: 669 LEHELPRVLLDWRQ-LSKLKGTYTENLIAAIAPSTGRVHTSYALAATTTGRLSSSDPNLQ 727 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R +A+ G L+ AD + IE R Sbjct: 728 NIPVRTEEGRK-------------------------IRKAFVAAPGHVLISADYSQIELR 762 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA + KAF+ G D++ T + F+ + R K + Sbjct: 763 LLAHIGDIPQLKKAFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAIN----------- 811 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A + Sbjct: 812 ---FGIVYGIS------------------------------AFGLANQLGISQGEAGAYI 838 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 K + ++ + + + + + GR Sbjct: 839 KTYFERFPGIQAYMDATKAFVRE--------------------------HGYVTTIFGRK 872 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY- 622 + D+ + R +Q + D++ M+ AG Sbjct: 873 INIPDIEAKSAAHRQF---AERAAINAP------IQGAAADVMRRAMIRMPVALEAAGLS 923 Query: 623 -DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E P+ + A + +M P+ A +PL E + + Sbjct: 924 TRMLLQVHDELVFEAPEAEAERACAVVRAVMEKAAEPAVALSIPLTVEARAASNW 978 >gi|149185474|ref|ZP_01863790.1| DNA polymerase I [Erythrobacter sp. SD-21] gi|148830694|gb|EDL49129.1| DNA polymerase I [Erythrobacter sp. SD-21] Length = 944 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 111/712 (15%), Positives = 201/712 (28%), Gaps = 165/712 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51 + +D ET S + ++ + + H Sbjct: 356 RLVAVDTETTSLDCMLC----------DLVGVSLATGPNQACYIPLGHGGSDMFAEKPQQ 405 Query: 52 ----VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107 LK LE+ V V N ++ VL I + T++++ + Sbjct: 406 IGKAEALAALKPLLEDDAVLKVFQNGKYDLNVLAR---EGIAVAPIDDTMIISFALDAGR 462 Query: 108 ALKAVGEALKLSSQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + +G + G I+ + + P EY D Sbjct: 463 SESGIGGGHGMDELAERHLGHPCISF----KELCGTGRKAIPFAEVPLDKATEYAAEDAD 518 Query: 167 VTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 VT + L+ ++ L + + G VD A L++ E Sbjct: 519 VTWRLHAMLKRRLPVEGGTKIYERVDRPLVPVVAGMERHGIKVDRARLAKLSEEFATETK 578 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKKLTPQ 272 +L+ E+ + + ++L LF + G +T Q VL + Sbjct: 579 RLEGEIHEIAGQ-EFTVGSPKQLGEILFDKLGFKGGKKGKSGQYSTDQSVLEKLSGDGAE 637 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + ++ + L EA+N T L ++TGR S QN+P Sbjct: 638 IAAKVLEWRQLAKLKSTYTDALQEAINPRSGRVHTSYSLVGAQTGRLSSTDPNLQNIPIR 697 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +R +A EG L+ AD + IE R+ A M Sbjct: 698 TEIGR-------------------------QIRDAFVAEEGNVLLAADYSQIELRLAAHM 732 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 A +AF GED++ T F +VT+D RA K + A+ Y + Sbjct: 733 ADVAPLKEAFAEGEDIHARTATEMFG----EVTRDTRARAKTINFAILYGIS-----RWG 783 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 L + + + + + Sbjct: 784 LAGRLGVEA---------------------------------------DEAQAMIDTYFK 804 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + + + GR + Sbjct: 805 RFPGIQKYILHTLEYVRE--------------------------KGYSETLFGRKTWFPR 838 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY---DIV 625 + + + R +Q S DI+ M+ +AG ++ Sbjct: 839 INSKNQAERQGS---ERAAINAP------IQGTSADIIKRAMVRMNSALEEAGLGHVRML 889 Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRYR 674 L VHDE+V E P+ D A +++ +M P +PL E K + Sbjct: 890 LQVHDELVFELPEADVAAASAIIERVMAGAAQPYVELSVPLGVEIGTGKSWG 941 >gi|170717348|ref|YP_001784457.1| DNA polymerase I [Haemophilus somnus 2336] gi|168825477|gb|ACA30848.1| DNA polymerase I [Haemophilus somnus 2336] Length = 951 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 101/722 (13%), Positives = 206/722 (28%), Gaps = 178/722 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------- 50 + +D ET + + ++ +F + H Sbjct: 354 DLIAVDTETDALDPMR----------ANLVGISFALTNGEACYIPLAHKQAVKEMTQTDL 403 Query: 51 --------------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 LK LEN + + N ++ T+ I + Sbjct: 404 FTESEQNAEQFELVKNQLNKETCLAQLKPLLENPSIQKIGQNIKYDLTIFANHH---IQL 460 Query: 91 HRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + T++ + + A+ E G ++I E+ + Sbjct: 461 NGVCFDTMLQSYVLDSTGRHNMGALSERY--------LGHQVIEF----ESIAGKGKKQV 508 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQTINDRG 196 + A EY D +T ++ + L + E L + T+ G Sbjct: 509 TFDKIAIAQATEYAAEDADITMKLHQVLWQELQQSPSLVKVFNDIELPLVKVLSTMERNG 568 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LE 252 +D ++ + T L+Q++ + ++L+ LF + L Sbjct: 569 VLIDSQALLKQSEKIARRLTALEQQVYQEAG-AEFNLASTKQLQEILFTKLALPIIAKTP 627 Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 +T + VL + + ++ ++ + L +N T Sbjct: 628 KGAPSTNEDVLETLAQQGHIVPKLLMEHRGLAKLKSTYTDKLPSMVNKKTGRVHTSYHQA 687 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P + C+R IA + Sbjct: 688 VTATGRLSSSDPNLQNIPIKNEEGR-------------------------CIRQAFIARK 722 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G K++ AD + IE R++A ++ + + AF G+D++ +T A F + +VT +QR Sbjct: 723 GYKIIAADYSQIELRIMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSA 782 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + L Y + L ++ + + + + F ++E E Sbjct: 783 KAINFGLIYGMS-----SFGLSNQLGISRANAQKYMDLYFQRYPGVQTFMVDIREKAKEQ 837 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + G R ++ A + AI A + + Sbjct: 838 GYVETLFGR---------RLYLPEINS-----SNAIRRKGAERVAINAPMQGTAADII-- 881 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 L + N N +Q Sbjct: 882 --------------KLAMIAIHNEIKK--------------------NDIQ--------- 898 Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESK 671 M+ + VHDE+V E + ++++ LM + +PL + Sbjct: 899 -MI----------MQVHDELVFEVKENKVDEYSALIKSLMENAAH--LSVPLIVDIGVGD 945 Query: 672 RY 673 + Sbjct: 946 NW 947 >gi|300309795|ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1] gi|300072580|gb|ADJ61979.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1] Length = 920 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 107/698 (15%), Positives = 199/698 (28%), Gaps = 156/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 +D ET S A ++ + + H + Sbjct: 346 AVDTETTSLE----------AMQAELVGISLCCEPGRAAYIPVAHNYQDAPVQLSRQHVL 395 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112 + LK LE+ + + ++ + + + + TL+ + P + ++ Sbjct: 396 EKLKPWLEDASKPKLGQHLKYDSHIFANY-GVRLAGVK-HDTLLESYVFESHRPHDMDSL 453 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 L + + A EY D VT + Sbjct: 454 AARH------------LERKTITYAEVCGKGASQIGFNEVAIERATEYAAEDAEVTLALH 501 Query: 173 KRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + + P + + Q I G +D + + +++Q+ Sbjct: 502 QAMWPQIEHDDKLRFIYEKIEVPTSVVLQKIERNGVLIDSERLGQQSHDLGKRMLEIEQQ 561 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277 L + ++L LF + L + T +T + VL + P + Sbjct: 562 AYDLAGQP-FNLNSPKQLGEILFGKLELPVVKKTASGAPSTDEEVLQKLAEDYPLPKVLL 620 Query: 278 NNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + R ++ + L + +N GR+ A TGR S QN+P + Sbjct: 621 DYR-GLAKLKSTYTDKLPKMVNPATGRVHTNYAQAVA-VTGRLSSNDPNLQNIPIRTAEG 678 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R +A EG +V AD + IE R++A ++ ++ Sbjct: 679 RR-------------------------IREAFVAPEGSVIVSADYSQIELRIMAHISEDE 713 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 LKAF ED++ T A F +AP QV +QR KV+ L Y A + Sbjct: 714 NMLKAFANNEDIHRATAAEIFGIAPEQVESEQRRYAKVINFGLIYGMSA-----FGLASN 768 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L + A + + + + + + + G Sbjct: 769 LGIERAAAQMYIDKYFMRFSGVKRYMDETRLQAKARGYVETVFGR--------------- 813 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 LW + P+G + Sbjct: 814 --RLW-----------------------------------LPEINSPNGPRRQGAERAAI 836 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 + + T L + VQ D + +++ VHDE+V E Sbjct: 837 NAPMQGTAADLIKMAMIA-------VQ----DW-----LETNSLQTRMIMQVHDELVLEV 880 Query: 637 PDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P + L LM + +PL AE K + Sbjct: 881 PQQELEMVREKLPELMKNVAE--LKVPLLAEVGIGKNW 916 >gi|193216333|ref|YP_001997532.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110] gi|193089810|gb|ACF15085.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110] Length = 931 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 111/704 (15%), Positives = 212/704 (30%), Gaps = 166/704 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----DPVMPQVL 57 D ET S L D ++ +F F C +VL Sbjct: 358 KEFAFDTETTSLTTL----------DAELVGISFSFAPGEAFFVYCAESALSRETAIRVL 407 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115 K LEN ++ + N ++ VLK + + R T++ + L + Sbjct: 408 KPILENPEIGKIGQNLKYDMLVLKNY-GVRVQPVR-FDTMLASYVLNPDKTHNLDDLAAD 465 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L K K + + +Y D V ++ L Sbjct: 466 H------------LGLETVKYADLVGKGKSEKSIYEVEPKTLSDYACQDADVALQLKNVL 513 Query: 176 EPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E + + L + + G +DVA+ TL++ + E ++ + + Sbjct: 514 EKALGENEPLKKICEELEFPLVGVLADMEHEGVRLDVAVLKTLSETLGTELGRVSKIIYD 573 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L LF + L + T+ +T RVL + P A Q+ R Sbjct: 574 AAG-EAFNLDSPKQLSEILFEKLKLPAKRRTKTGYSTDVRVLEELAESFPVAKQILEYR- 631 Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L ++ GR+ + A+ TGR S QN+P + E Sbjct: 632 SLQKLKSTYVDALPNLVHPKTGRIHTSFNQHIAA-TGRLSSSNPNLQNIPIRTEIGRE-- 688 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399 +R + S+ L+ AD + IE R+ A ++G+ L Sbjct: 689 -----------------------IRGAFVPSDAHHTLLSADYSQIELRIAAELSGDPTML 725 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF+ ED++ TT F +VTKD R K + G+ Sbjct: 726 GAFQNREDIHSTTAKLIF--ETDEVTKDMRRKAKEVNF--------------GVLYGIMP 769 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + A + + +++K+ + Sbjct: 770 FGLAQRLDISQA------------------------------EAKEIISQYKEKYPMIFS 799 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + GR RD+ + Sbjct: 800 YLEGILDKAR--------------------------ASGYVETLLGRRRYIRDLNSKNFS 833 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATK--AGYDIVLTVHDEIV 633 + + R +Q + D++ + M+ + K ++L VHDE++ Sbjct: 834 IRSA---AERAAINTP------IQGTAADMIKKAMLGIASDIHKQSLRSRMILQVHDELL 884 Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKG---LPLKAEGYESKRY 673 +++ L M A G +P++ E + Sbjct: 885 FNMHESEVDILPELVQREMIEAAK-AIGIRNVPIEVEVGTGANW 927 >gi|16127694|ref|NP_422258.1| DNA polymerase I [Caulobacter crescentus CB15] gi|13425184|gb|AAK25426.1| DNA polymerase I [Caulobacter crescentus CB15] Length = 967 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 194/715 (27%), Gaps = 176/715 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------ 51 + D ET + + + H Sbjct: 380 VAFDTETDALSS----------ATAGLCGVSLAIAPGEACYIPISHCEKADGLAFEAPAD 429 Query: 52 -------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ V VA N+ ++ VL I + T++++ Sbjct: 430 IEQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH---GIQVAPIEDTMLISYVLE 486 Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E + G + I + A Y Sbjct: 487 AGLHGHGMDELSE--------LHLGHKPIPF----KQVAGSGKGQISFKHVALPEATAYA 534 Query: 162 KGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT ++ L+P ++ E+ + + + + G VD L+ Sbjct: 535 AEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMMENNGVRVDPEALRLLSNEF 594 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + + + + L + +++ LF E + T +T VL S Sbjct: 595 SLRMAQFEARAQELVGRP-FNLGSPKQIGDVLFGEMQMKGGKKTATGQWSTDSDVLESLA 653 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + R S+ L+ A+ T L A+ TGR S Q Sbjct: 654 LEHELPRVLLDWRQ-LSKLKGTYTENLIAAIAPSTGRVHTSYALAATTTGRLSSSDPNLQ 712 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R +A+ G L+ AD + IE R Sbjct: 713 NIPVRTEEGRK-------------------------IRKAFVAAPGHVLISADYSQIELR 747 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA + KAF+ G D++ T + F+ + R K + Sbjct: 748 LLAHIGDIPQLKKAFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAIN----------- 796 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A + Sbjct: 797 ---FGIVYGIS------------------------------AFGLANQLGISQGEAGAYI 823 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 K + ++ + + + + + GR Sbjct: 824 KTYFERFPGIQAYMDATKAFVRE--------------------------HGYVTTIFGRK 857 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY- 622 + D+ + R +Q + D++ M+ AG Sbjct: 858 INIPDIEAKSAAHRQF---AERAAINAP------IQGAAADVMRRAMIRMPVALEAAGLS 908 Query: 623 -DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E P+ + A + +M P+ A +PL E + + Sbjct: 909 TRMLLQVHDELVFEAPEAEAERACAVVRAVMEKAAEPAVALSIPLTVEARAASNW 963 >gi|75906029|gb|ABA29378.1| DNA polymerase [Bacteriophage APSE-2] Length = 579 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 208/581 (35%), Positives = 314/581 (54%), Gaps = 21/581 (3%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 LF D ET S I + CG +YAE+ ++LFA+ ++ PV++WD D MP LK ++ Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63 Query: 64 TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL--SS 120 +++ V HN F+ +LK N+D+P+ R TLV A ++GLP AL + + + Sbjct: 64 SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123 Query: 121 QKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K +EGK LI+ CK R H E W+ F +Y D+ REI++ L + Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183 Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T QR ++ + P ++ + R+++ ++ K L+++ Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRIND-PDIPPDLRELLSVRLQSCTTSTSKYKALLKS 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 +++DGRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L D Sbjct: 303 VSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDD 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YV 410 +Q+ S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+KAF ++ Y Sbjct: 363 IMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YAR+FN+ P VTKDQR IGKVMEL LGY GG AF A GL+L+ A + Sbjct: 423 LAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 P +A ++ + E + + + T C+ +K+ WR H + W ++ A +Q Sbjct: 483 PPGVKREATSWYQKSVEKDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQ 541 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 I++ ++ + +++DK L + LPSGRSL Y Sbjct: 542 AIQSPGIAFKCRK-----LSVRRDKGWLRICLPSGRSLCYP 577 >gi|91203357|emb|CAJ71010.1| stongly similair to DNA polymerase I [Candidatus Kuenenia stuttgartiensis] Length = 887 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 95/702 (13%), Positives = 194/702 (27%), Gaps = 164/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQV 56 ID ET L ++ +F ++ + + Sbjct: 316 AIDLETTGTDPLK----------AHIVGLSFSWEQKEAYYVPLMAPENTRHLTADIVLPE 365 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVG 113 +++ LE+ + N ++ VLK N+ + + +++ + L + Sbjct: 366 IRKVLEDESKKKIGQNIKYDLLVLKKH-NIGLKGI-YFDSMIASYLLNPAKRNHNLDDIA 423 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 S K ELI + + +Y D +T + + Sbjct: 424 FEY--LSYKTIMIAELI----------GSGKQQITMDKVPVDKVCQYACQDADITFRLAE 471 Query: 174 RLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + PL E L Y+ + G C++ ++ + + L++E+ Sbjct: 472 TMAPLLKKEGLWQLFQEIEIPLIYVLAEMEGNGICINADFLRQMSGDLAAQLQCLEKEIY 531 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280 + + ++L LF + L T+ +T VL+S P R Sbjct: 532 RV-AEQEFNISSHKQLGAILFDKFQLPKLRRTKTGVSTDANVLASLAWRHPLPKLALEYR 590 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L +N D T + TGR S QN+P + Sbjct: 591 Q-LAKLKSTYADALPNLLNQDTGKIHTTFNQTVTSTGRLSSSNPNLQNIPVKT------- 642 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 I +R I S + + AD + IE R+LA + + + Sbjct: 643 ------------------DIGKQIRRAFIPSGKNAVFLSADYSQIELRILAHFSEDTALM 684 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF D++ + ++V VT + R K + GLN Sbjct: 685 EAFREDLDIHAAVASSIYHVPLENVTTEMRRNAKAINF--------------GIIYGLNE 730 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + A+ + V E Sbjct: 731 YGLS------------------------------RDTGLSLNDAKDFIDAYFTLYQGVRE 760 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 +++ + ++ + R D+ Sbjct: 761 FRDKVVEEAKE--------------------------MGYVKTLFNRKRAIPDINAKN-- 792 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 R I+Q + D++ M N ++L +HDE++ Sbjct: 793 -KRFRNLAERIAI------NTIIQGSAADLIKVAMNNIYSKLKCGDYEARMLLQIHDELL 845 Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674 E ++ M + +P+K K + Sbjct: 846 FEVGVQALEQTRIMVQEEMGHAVT--LRVPVKVNIKTGKNWM 885 >gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901] gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901] Length = 908 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 114/696 (16%), Positives = 206/696 (29%), Gaps = 151/696 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + D ++ +F + HD + Sbjct: 333 AFDTETTSLNYM----------DAEIVGVSFAVEPGKAAYVPVAHDYLGAPEQLSREHVL 382 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LEN + V N ++ VL ++ + + T++ + + + Sbjct: 383 ARLKPLLENDGLKKVGQNLKYDANVLANY-DIALKGIAY-DTMLESYVHNSTGS------ 434 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + E L + E + ++ G Y D +T + + Sbjct: 435 --RHDMDTLAELH-LGHKTIHFEDIAGKGAKQLTFNQIKLEEAGPYAAEDADITLRLHQA 491 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P + E L + I G +D L L+ KL++E Sbjct: 492 LWPKVAEAEGLKTVFNDVELPLVSILSRIERNGALLDTKLLGELSLQHGASIVKLEKEAY 551 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNN 279 L + ++L T LF + L + T +T + V+ P + + Sbjct: 552 ELAG-EEFNLGSPKQLATILFEKMNLPVVKKTAKGAPSTNEEVMQELALDYPLPSVILQH 610 Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ + L +N GR+ + A+ TGR S QN+P + Sbjct: 611 R-SLSKLKSTYTDKLPTMVNKKTGRVHTSYHQAVAA-TGRLSSSDPNLQNIPIKTDEGRR 668 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA G K+V AD + IE R++A ++ + Sbjct: 669 -------------------------IRQAFIAPAGYKMVAADYSQIELRIMAHLSNDPGL 703 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 KAF G D++ +T A F A V+ +QR K + L Y A L Sbjct: 704 QKAFAEGLDVHKSTAAEVFGTALENVSSEQRRSAKAINFGLIYGMSA-----FGLARQLR 758 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + ++ E + + ++++ E + Sbjct: 759 IGRNDAQTYIDTYFERYPGVAEYMANIRKSAAEKGYVETL-------------------- 798 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 +R +P + R V N Sbjct: 799 ---------------------LGRRLYLPEINSSNGM----------RRQAAERVAINAP 827 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET-P 637 T + R D+ + + + I++ VHDE+V E Sbjct: 828 MQGTAADIIKRAMI---------------DV--DAWLQTEQIDARIIMQVHDELVLEVAA 870 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E ++ L +M+S +PL E + Sbjct: 871 ADAEAISAKLCDIMSSAV--VLSVPLLVEAGIGDNW 904 >gi|326386581|ref|ZP_08208203.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370] gi|326208896|gb|EGD59691.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370] Length = 994 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 110/718 (15%), Positives = 194/718 (27%), Gaps = 181/718 (25%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------- 52 + +D ET S +D A ++ + H Sbjct: 408 VAVDTET-SALD---------AVGADLVGISLATGPGAACYIPLGHGNTTDMFAERPRQI 457 Query: 53 ----MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---- 104 +LK LE+ V V N ++ TVL I + T+V++ Sbjct: 458 DKARALALLKPLLEDDSVLKVGQNIKYDLTVLARH---GIAVAPIDDTMVMSFCLDAGRG 514 Query: 105 ----LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + E G I K + + Y Sbjct: 515 EPMPFGHGMDELAERH--------LGHTTI----KFKDVAGTGKKAISFAEVPLPDATRY 562 Query: 161 CKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 D VT + L P ++ L + T+ G VD TL+ Sbjct: 563 AAEDAEVTWRLHAVLAPRLAEEGGTRIYQRVDRPLVQVIATMEGHGIKVDRERLATLSGE 622 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSN 266 L+ + + ++L LF + G +T Q VL + Sbjct: 623 FATRIAALESVIHEKAGTT-FTIGSPKQLGEVLFDKLGYKGGKKGKSGQYSTDQSVLETL 681 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + + + S+ + L A+N T L ++TGR S Sbjct: 682 ASQGAEVATLVLEWRQLSKLKSTYTDALQAAINPATGRVHTSYSLVGAQTGRLSSNDPNL 741 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P + +R +A G L+ AD + IE Sbjct: 742 QNIPVRTEIGR-------------------------QIRDAFVAEPGHVLLSADYSQIEL 776 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+ A +A +AF GED++ T F +V +D R K + A+ Sbjct: 777 RLAAHIADVPALREAFAHGEDIHARTAMELFG----EVNRDTRGRAKTINFAIL------ 826 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ A + + Sbjct: 827 --------YGIS------------------------------RWGLATRLGTSADEAQAM 848 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + ++ + +E + GR Sbjct: 849 IDRYFERFPGIQRYIHETLEHVRD--------------------------RGYSETLFGR 882 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGY 622 + + + + R +Q DI+ M T +AG Sbjct: 883 KTWFPRIASKTQAERAGS---ERAAINAP------IQGTCADIIKRAMARMTPALVEAGL 933 Query: 623 ---DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAEGYESKRYR 674 ++L VHDE+V E P++D A +++ +M + A +PL E + Sbjct: 934 GHVRMLLQVHDELVFELPESDVAAASAVIERVMATAAEPAVKLSVPLGVEIGTGPSWG 991 >gi|300868897|ref|ZP_07113503.1| DNA polymerase I [Oscillatoria sp. PCC 6506] gi|300333114|emb|CBN58695.1| DNA polymerase I [Oscillatoria sp. PCC 6506] Length = 1009 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 108/709 (15%), Positives = 223/709 (31%), Gaps = 157/709 (22%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHD-------PVMPQVL 57 D ET + D ++ + H ++ + L Sbjct: 414 DTETTALEP----------RDAELVGIGCCWGTGEADLAYIPTGHKTGQNLDKAIVLEAL 463 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG---E 114 + LE+ + N+ F+R +L C + + T++ + + E Sbjct: 464 RPILEDNNYPKALQNAKFDRLIL-RCQGIKLA-GVVFDTMLASYVIDPEGSHNLTALCKE 521 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L+ + K+L++ + + A + YC DV T ++ + Sbjct: 522 YLEDPKLTAKSYKDLVS-------------KEQTIADLAIPIVANYCGMDVYTTFQLVSK 568 Query: 175 LEPLSSK------------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 L + EQ L + + +G ++ + L+Q ++ + Sbjct: 569 LREKLEELDAEKPLTASLEQLLIKVEQPLEPVLAQMEYKGIRINTEYLNELSQELENKLQ 628 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTP 271 ++Q + S ++L LF L ++ +T VL + Sbjct: 629 LIEQTAYEVAG-EEFSLSSPKQLSKLLFETLKLDIKKSRRIQSGYSTDAAVLEKLQDDHE 687 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 + +R S+ ++ L + + D GR+ A+ TGR S QN+P Sbjct: 688 VVKTILEHR-TLSKLKSTYVDALPQLVRPDTGRVHTDFNQA-ATGTGRLSSSNPNLQNIP 745 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 + S +R + EG +V AD + IE R+LA Sbjct: 746 IRTE-------------------------FSRQIRKAFLPKEGWLMVSADYSQIELRILA 780 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 + E ++A++T +D++ T F VT D+R +GK + + Y GA+ F + Sbjct: 781 HLTQEPVLVEAYKTNQDVHTVTAKLLF--EKETVTPDERRLGKTINFGVIYGMGAQRFAR 838 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 ++ + + + + ++++ +G + + Sbjct: 839 SVE----GVSPTQAKLFIERFNQRYSRVFEYLNRVKKDAIAQGYVSTILGR------RRY 888 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + G+++ K DV + + KN Sbjct: 889 FK--------------------FEGESVRKLKDSDVQDINLATLKN-------------- 914 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVL 626 + QL R +Q S DI+ M+ ++L Sbjct: 915 ---------IGQNDAQLLRAAANAP------IQGSSADIIKVAMVKLHDILKDRQARLLL 959 Query: 627 TVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 VHDE+V E P + + + M + +PL + + + + Sbjct: 960 QVHDELVLEVPPDEWEELQHKIKNTMENAVE--LSVPLVVDIHAGQNWM 1006 >gi|322835075|ref|YP_004215102.1| DNA polymerase I [Rahnella sp. Y9602] gi|321170276|gb|ADW75975.1| DNA polymerase I [Rahnella sp. Y9602] Length = 934 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 108/698 (15%), Positives = 203/698 (29%), Gaps = 154/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET LT +I +F + HD + Sbjct: 358 AFDTETDGLDTLT----------ANLIGLSFATEAGKAAYLPVAHDYLDAPVQLDRDEVL 407 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 + LK LE+ V N F+R VL ++++ T++ + + + Sbjct: 408 KQLKPILEDEKQLKVGQNLKFDRGVLLRY-DIELKGIA-FDTMLESYVLDSVSGRHDMDS 465 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + G + ++ E ++ A Y D VT ++ Sbjct: 466 LADRY--------LGHKTVSF----EEIAGKGKNQLTFNQIALEQAAPYAAEDADVTLQL 513 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E L + I G +D + ++ + + +L+ Sbjct: 514 HQALWPRIAESESLKTVFTDIEMPLVPVLSHIERTGVLIDQNILAAHSKELAIRLNELEN 573 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 574 KAHEL-AEEPFNLSSTKQLQAILYEKQKLPILKKTPGGAPSTNEEVLAELALDYPLPKVI 632 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 633 LEYR-GLAKLKSTYTDKLPLMINPQSGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEG 691 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA + ++ AD + IE R++A ++ ++ Sbjct: 692 RR-------------------------IRQAFIAPKDYIILAADYSQIELRIMAHLSKDE 726 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 LKAF G+D++ T A F +V+ +QR K + L Y A + Sbjct: 727 GLLKAFAEGKDIHRATAAEVFGTPLEKVSGEQRRSAKAINFGLIYGMSA-----FGLSRQ 781 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 LN+ + E + + + E + G R Sbjct: 782 LNIPRKESQRYMDLYFERYPGVLEYMERTRTQASEQGYVETLDGRRLYLPDIKSSNAMRR 841 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 +A G A KR + + K + Sbjct: 842 -----KGAERAAINAPMQGTAADIIKRAMISVADWLKQPDAPR----------------- 879 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 +R I+ VHDE+V E Sbjct: 880 -----------------------------ARIIM----------------QVHDELVFEV 894 Query: 637 PDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 D A + +LM ++ + A +PLK + + + Sbjct: 895 HKDDVEVASEKIRNLMEASMTLA--VPLKVDVGTGENW 930 >gi|323144953|ref|ZP_08079513.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066] gi|322415232|gb|EFY06006.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066] Length = 940 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 100/711 (14%), Positives = 199/711 (27%), Gaps = 173/711 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 D ET S ED ++ +F ++ H + Sbjct: 359 AFDTETTSLHP----------EDCTLVGVSFSVEEKEAFYLPLAHAYLGAPVQLAKDDVF 408 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAV 112 L + + + HN F+ VL L + T+++A + L + Sbjct: 409 AKLAPVFADPKIKKIGHNVKFDLLVL-YFAGLSAVKGVYADTMLMAHLLDSVQSCALDNL 467 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K L + K ++ + Y D V +F Sbjct: 468 AE------------KYLSYKTIKYSDVAGSGSKSVTFDNVPVDIACAYSGEDSEVALRLF 515 Query: 173 KRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 L P E + + G V + +++ E + ++ Sbjct: 516 NVLLPKIKDEGKANDILFNLEMPCLSVLFDMERVGALVSADELYRQTEVLKSELQAVQKD 575 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---------TTCQRVLSSNKKLTPQ 272 + + + ++L LF + + +T + VL+ + Sbjct: 576 IYAAAGQ-EFNIASPKQLGNVLFESLAIPYPKKVKVDKNGNKQYSTAEDVLTEIAPMYDI 634 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 A V R S+ L ++ GR+ + G + TGR S QN+P Sbjct: 635 ANLVLRFR-SVSKLIGTYTEKLPLLISKRTGRIHTSFNQAGTT-TGRLSSSDPNLQNIPA 692 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + + +R IA +G LV AD + IE R++A Sbjct: 693 RTHEGK-------------------------LIRKAFIAPQGYTLVSADYSQIELRLIAH 727 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +A + +KAF+ G D++ T A +VT ++R+ K L Sbjct: 728 IAKDPNLIKAFKLGYDIHKATAAEVLGKDINEVTGEERSRAKATNFGLM----------- 776 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 + + A + + Sbjct: 777 ---------------------------------YGMGAHGLSAQTGLSFKAAKAYIDCYF 803 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ ++ + + + + + + + GR + + Sbjct: 804 TRYPKIRDYMDSIKKFAHE--------------------------HGYVETILGRRIDFP 837 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDI 624 + + R +Q + DI+ M+ K + Sbjct: 838 GINSTN---RIAVTGAERAAINAP------MQGSAADIIKIAMIAIEKWITSLPADTVRM 888 Query: 625 VLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 +L VHDE+V E + A + + LM + + +PL A + + Sbjct: 889 ILQVHDELVFEVKNEFLDEATAKIKELMENAVT--LDVPLLAGIGIGQNWG 937 >gi|183220086|ref|YP_001838082.1| DNA polymerase I [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910206|ref|YP_001961761.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774882|gb|ABZ93183.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778508|gb|ABZ96806.1| DNA polymerase I (POL I) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 942 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 105/706 (14%), Positives = 207/706 (29%), Gaps = 166/706 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53 + ID ET S + ++ +F + H + Sbjct: 365 KPISIDTETTSQDPMM----------AELLGISFSEEPGVAYYIAFSHSESIYSHLLPSA 414 Query: 54 ---PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---S 107 ++LK LE+++ + N ++ VLK +++ + T++ + Sbjct: 415 EESLKILKPMLEDSNWKKIGQNIKYDLLVLKNY-GIELKGI-YFDTMLASYLLNPGERRH 472 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 + + + K +EL+ + + + EY D + Sbjct: 473 NMDDMAVDY--LNYKTITYEELV----------GTGKKKQNLYDIDPDKVSEYACEDADI 520 Query: 168 TREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 T ++ L P E + + G VD + +L+ D + + Sbjct: 521 TLQLHNVLSPKMDENIHKKLFYEMEMPVLLTLADMEFEGIAVDKSYFESLSGTFDTKIKE 580 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ETTCQRVLSSNKKLTPQAI 274 ++ + G + ++L+T LF + L E T +T VL S + P Sbjct: 581 HEKNIH-FYAGRQFNVNSTKELQTVLFEDLRLPAEKKTQTGYSTDHSVLESLQGTHPIID 639 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + R + S+ +TL +N + T + TGR S QN+P Sbjct: 640 DLLSIR-KFSKLKSTYTDTLPLLVNPKTKRIHTSYNQTIAATGRLSSTNPNLQNIPIKDE 698 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA +G +++ D + IE R++A + Sbjct: 699 EGR-------------------------LLRKGFIAKKGYEILSLDYSQIELRIMAHFSN 733 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + A+ +G D++ T A F V QVT D R Sbjct: 734 DPNMIDAYNSGADIHKRTAAGIFGVPEDQVTPDMRNKA---------------------- 771 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 NF + + + + + Sbjct: 772 ----------------------KVVNFSVIYGVTSFGLSNNLRISRKEAKEFIEKYFAAY 809 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V+ E+ + +Q N + GR D+ Sbjct: 810 KGVATYMEEIVEFCKQ--------------------------NGYVETLLGRRRYLPDIH 843 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 ++ + + R +Q S D++ M+ + ++L V Sbjct: 844 SSHKMV---SEGAKRVAINSP------IQGTSADMIKIAMIQIHEKIKKESFRSKLLLQV 894 Query: 629 HDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E P + M M S +P+ +G + Sbjct: 895 HDELVFEVDPKEKKEFFQMAKEEMESAMK--LKVPIVVQGKFGGNW 938 >gi|124004714|ref|ZP_01689558.1| DNA polymerase I [Microscilla marina ATCC 23134] gi|123989837|gb|EAY29366.1| DNA polymerase I [Microscilla marina ATCC 23134] Length = 955 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 102/718 (14%), Positives = 209/718 (29%), Gaps = 175/718 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 D ET S + A+D ++ AF D + Sbjct: 363 DEFCFDTETTSLV----------AQDAELVGIAFATYAGEAYYVPTPADQKEAQAIVDEF 412 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEA 115 KE E+ + +A N ++ VLK ++ P ++ T++ + + + ++ Sbjct: 413 KEVFEDESIGKIAQNLKYDWVVLKNY-GIE-PKGKFFDTMLAHYLLQPDMRHNMDVLAKS 470 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + E LI + + EY D +T ++ + Sbjct: 471 Y--LNYEPVEITSLIGK---------KGKKQGSMRDVELDKITEYAGEDADITLQLKEIF 519 Query: 176 EPLS------------------------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 + E L + T+ G +D L++ + Sbjct: 520 DAQIKAQDLRHPAPEDGGEKVTLEKLLDEVETPLIEVLATVETNGVRLDSESLAKLSKEL 579 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSN 266 E L++++ + + ++L LF + L + T++ T + +L Sbjct: 580 AKEVVVLEEKIYKIAG-EQFNIASPKQLGEILFGKLQLDPKAKKTKSGQYATGEEILVKL 638 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + + R + ++ L E +N L T + TGR S Sbjct: 639 ADKNEIVQHILDFR-GLQKLKNTYVDALPELVNKKTGLIHTSYNQAVAATGRLSSTNPNL 697 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIE 385 QN+P + E VR I + L+ AD + IE Sbjct: 698 QNIPIRTAQGRE-------------------------VRRAFIPRSDEFVLLAADYSQIE 732 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R++A + + +KAF+ GED++ TT ++ + V QV D R K Sbjct: 733 LRIMAEFSQDATMIKAFQNGEDIHATTASKIYKVPLDQVDSDMRRKAKTANF-------- 784 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ + Sbjct: 785 ------GIIYGIS------------------------------AHGLSERLNIPRKEAGE 808 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + KA+ ++ V + +++ + + G Sbjct: 809 IIKAYFEEFPAVKQYMDDMINKAREQE--------------------------YVETILG 842 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------ 619 R R++ + + R +Q + D++ M+ + Sbjct: 843 RRRYLRNINSRNAVERGN---AERNAINAP------IQGSAADMIKIAMIRLHEFLKKEH 893 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWA---KGLPLKAEGYESKRY 673 ++L VHDE+V + + + LM + S +P++ E E + Sbjct: 894 LKSKMILQVHDELVFDAHKDELGILKPAIVDLMKNALSSINRTMQVPMEVEVGEGTTW 951 >gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense MSR-1] Length = 925 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 101/714 (14%), Positives = 189/714 (26%), Gaps = 168/714 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + D ET L ++ + HD Sbjct: 335 QVAFDTETTGLDPLR----------AELVGVSLATAPGRACYIPIKHDAGPAQGSLLLDP 384 Query: 51 ------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 V L L + V + HN ++ V+ + + + T++ Sbjct: 385 SPAAAGPDILGREVTLAKLAPLLADASVLKIGHNIKYDMQVMAQA---GLTVTAFDDTML 441 Query: 99 LARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 L+ + + K+ + I K R Sbjct: 442 LSYVLDGASHGHGMDELA--------KLHLDHDTI----KFADVCGTGKNQITFDRVPLD 489 Query: 156 LFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAH 205 Y D +T + L+ + E+ L + + G VD Sbjct: 490 KALAYAAEDADITLRLHGALKARLLAERMVTVYETLERPLVPVIVAMEAAGIKVDRTALM 549 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQR 261 L+ +L+ ++++L + ++L LF L T+T T Sbjct: 550 ALSAEFGGRMAELEVQIQNLAG-REFNVGSPQQLGKVLFENMSLPGGKKTKTGQWGTGAD 608 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 L + + S+ + LV +N T L + TGR S Sbjct: 609 ALEELAAQGHDLPARVLDWRQLSKLKGTYTDALVAQINPRTGRVHTSFALALTTTGRLSS 668 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 QN+P S + +R IA G L+ AD Sbjct: 669 SDPNLQNIPIRSEEGRK-------------------------IRHAFIAEPGHVLLSADY 703 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R++A +A + ++AF G D++ T A+ F V + R K + + Y Sbjct: 704 SQIELRLVAHVACIKGLIQAFHDGADIHAITAAQVFGVPVEGMDPMLRRRAKAINFGIIY 763 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 A L ++ ++ + + +F +E + G Sbjct: 764 GISA-----FGLAQQLGISNGEAKSYIDAYFGRYPEIRDFMERTKEEARANGFVLTPFGR 818 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 + + + E+ NG Sbjct: 819 KVFT---------PGIKDKNGAMRAFAERAAING-------------------------- 843 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 + R A++ + L Sbjct: 844 ----------------PIQGGAADIIKRAMIRLPA-------ALAAEGLK---------- 870 Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE+V E P ++ +++ +M S +PL AE + Sbjct: 871 ARLLLQVHDELVLEVPVAEQDATRAVVCRVMESAAQ--LDVPLVAEAGFGTSWG 922 >gi|332705531|ref|ZP_08425609.1| DNA polymerase I [Lyngbya majuscula 3L] gi|332355891|gb|EGJ35353.1| DNA polymerase I [Lyngbya majuscula 3L] Length = 996 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 114/701 (16%), Positives = 208/701 (29%), Gaps = 152/701 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHDP-------VMPQVL 57 D ET D ++ + V H ++ + L Sbjct: 412 DTETSDLEP----------RDAQLVGIGCCWGKEFTDVAYIPIGHKDGTNLDKDIVLESL 461 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGE- 114 + LE++D V NS F+R VL C + + T++ + L +G Sbjct: 462 RPILESSDYPKVLQNSKFDRLVL-RCNGIQLA-GVVFDTMLASYVLNPETSHKLSDLGLH 519 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L + +Q L + K +YC D T I + Sbjct: 520 YLGIEAQSY----------------NDLVPKGKTIRDLDIPTVADYCGMDAYTTFGIVFK 563 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L + EQ L + + +G +D +Q ++ + + Q+ Sbjct: 564 LREELEQIPALQQLLLEVEQPLEPVLAEMEYQGIRIDKDYLQQFSQELEKDLVAIKQQAY 623 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + ++L LF + GL +T +L+ + P + Sbjct: 624 QDAG-EEFNLGSPKQLSQLLFEKLGLDRRKSRKTKTGYSTDATILAKLQGDHPVVDAIVE 682 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ ++ L M SD + T + TGR S QN+P + Sbjct: 683 YR-SLSKLKSTYVDALPALMRSDTKRVHTDFNQTVTTTGRLSSSSPNLQNIPIRT----- 736 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 S +R I G LV AD + IE R+LA ++ E Sbjct: 737 --------------------DFSRQIRKGFIPESGWLLVSADYSQIELRILAHLSQEPVL 776 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++A++T D++ T F +T ++R +GK++ + Y GA+ F + A Sbjct: 777 VEAYQTQADVHTLTAQMLF--DKEDITAEERRLGKIINFGVIYGMGAQRFAREAK----- 829 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++T + + + + ++ + Sbjct: 830 VSTAEGKEFIDRLNQRYPLVFAYLEETKKKAIAQGYVETI-------------------- 869 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 +RR L G+ L D+ Sbjct: 870 ---------------------LGRRRYFSF-------GGNSLRRLQGKPLDQIDLD-KLK 900 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634 +N R +Q S DI+ M+ + ++L VHDE++ Sbjct: 901 SINPYDAGSLRAAANSP------IQGSSADIIKIAMIKLYQELQKYKARLLLQVHDELIF 954 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E P + + M S +PL E + + Sbjct: 955 EIPPDEWEELQLKIRETMESAVE--LTVPLVVEIHAGDNWM 993 >gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4] gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4] Length = 922 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 103/697 (14%), Positives = 196/697 (28%), Gaps = 152/697 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 +D ET S + ++ +F + HD Sbjct: 346 AVDTETTSLDYMV----------AELVGLSFAVEAGKAAYLPLAHDYVGAPQQLDKQTAL 395 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113 + L+ LE+ + V N ++ +VL + + T++ + ++ G Sbjct: 396 EKLRPILEDAKLKKVGQNLKYDISVLANA-GIQLQ-GVVFDTMLESYVFNSVASRHDMDG 453 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 ALK K ++ + ++ Y D +T + + Sbjct: 454 LALKYLGHKNIAFED----------IAGKGAKQLTFNQIQLETAAPYAAEDADITLRLHQ 503 Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E L + I +G +D L + + + +L+ + Sbjct: 504 HLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETKA 563 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ F + G + T +T + VL P + Sbjct: 564 YDIAG-EKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLPKVILE 622 Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R ++ + L +N GR+ + A+ TGR S QN+P + Sbjct: 623 HR-SLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEGR 680 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R IA +G+K++ AD + IE R++A ++ + Sbjct: 681 R-------------------------IRQAFIAPQGRKILAADYSQIELRIMAHLSQDAG 715 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 LKAF G+D++ T A F VT +QR K + L Y A L Sbjct: 716 LLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSA-----FGLARQL 770 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 ++ ++ + + + + E G + R R Sbjct: 771 DIPRNEAQTYIDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRR- 829 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +A G A K+ + + K + Sbjct: 830 ----QAAERAAINAPMQGTAADIIKKAMISIADWIKTDTQGEI----------------- 868 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 M+ + VHDE+V E Sbjct: 869 -----------------------------------AMI----------MQVHDELVFEVD 883 Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + LM + L AE + Sbjct: 884 ADKAETLKLKVCELMAKAA--NLDVELLAEAGIGDNW 918 >gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242] gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242] Length = 996 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 111/711 (15%), Positives = 202/711 (28%), Gaps = 164/711 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---------- 52 + +D ET S ++ ++ + H Sbjct: 406 VVAVDTETTSLDPMSC----------ELVGVSLAITPGRACYIPLQHREPGDGDLFGGAA 455 Query: 53 ----------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 LK LE+ V +AHN ++ VL + + T++++ + Sbjct: 456 LLQGQIPLDKAIATLKPLLEDDAVLKIAHNMKYDLLVLARY---GVDVAPIEDTMLISYT 512 Query: 103 NG---LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 L + G E I R A E Sbjct: 513 LDTGRNNHGLDELTLKH--------LGHENIPFSA----VAGSGRNFIGFARVALDRATE 560 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D VT +++ L+P + E + + RG +D A+ L+ Sbjct: 561 YATEDADVTLRLWRALKPRLAAEHMTNVYETLERPMVATLAGMERRGITIDRAMLSRLSG 620 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSS 265 + +L+ ++ L + ++L LF + GL T +T VL Sbjct: 621 EFAQDMARLEADIFDLAG-ETFNLGSPKQLGDILFGKMGLPGAKKTATGAWSTSASVLED 679 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + + + S+ + L +N + T L A+ TGR S Sbjct: 680 LANEGNDFARRILDWRQLSKLKSTYTDALPGFVNKETGRVHTSYALAATTTGRLSSSDPN 739 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P + + + +R +AS G L+ AD + IE Sbjct: 740 LQNIPVRNEAGRK-------------------------IRKAFVASPGHVLISADYSQIE 774 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A KAF G D++ T + F V + + R K + + Y A Sbjct: 775 LRLLAHIADIPQLKKAFADGIDIHAMTASEMFGVPVKDMPPEVRRRAKAINFGIIYGISA 834 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 L++ E + ++ ++ E G C Sbjct: 835 -----FGLANQLSIPREEAGAYIKRYFERFPGIRDYMEATKKLVREKGAVTTIFGRVCHF 889 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + ++ + +A G A +R V + Sbjct: 890 PRIG--SANASDRAFY---ERAAINAPIQGAAADIIRRAMVRMDD--------------- 929 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 A++ + L M + Sbjct: 930 --------------------------------------ALASEGLKAQM----------L 941 Query: 626 LTVHDEIVCETPDTDEFNASML-YHLMTSNPSWA--KGLPLKAEGYESKRY 673 L VHDE+V E P + + +M P+ A +PLK + + + Sbjct: 942 LQVHDELVFEAPKKEAEATIEIARRVMEEAPAPAVQLAVPLKVDARAAANW 992 >gi|121595619|ref|YP_987515.1| DNA polymerase I [Acidovorax sp. JS42] gi|120607699|gb|ABM43439.1| DNA polymerase I [Acidovorax sp. JS42] Length = 922 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 109/699 (15%), Positives = 207/699 (29%), Gaps = 155/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54 +D ET S +L ++ +F + H+ + Sbjct: 349 ALDTETTSLDELR----------AEIVGVSFSVEPGAAAYIPLAHNGPDAPPQLPLAEVL 398 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112 + L+ LE+ + + ++R V + + + T++ + + P L ++ Sbjct: 399 ERLRPWLEDPACPKLGQHVKYDRHVFANH-GIQVRGYA-HDTMLQSYVLEVHKPHGLASL 456 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E G+ I+ E + P + Y D T ++ Sbjct: 457 AERH--------TGRTGISY----EDLCGKGAKQIPFAQVPVDKAAAYSCEDSDQTLDVH 504 Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L P E I G +D + + +L+QE Sbjct: 505 RVLWPQLQADDKLRGIYELEMACSETLFRIERNGVLIDAGKLAAQSHALGQRILQLEQEA 564 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 ++ + ++L F + G+ + T +T + VL + P ++ Sbjct: 565 YAIAGQP-FNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLE 623 Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R + + L + GR+ A TGR S QN+P + Sbjct: 624 HR-SLCKLKGTYTDKLSTLADPRTGRVHTHYAQAVA-VTGRLSSNEPNLQNIPIRTPEGR 681 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 VR +A G+ + AD + IE R++A ++G++ Sbjct: 682 R-------------------------VREAFVAPAGRVIASADYSQIELRIMAHISGDEA 716 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF G D++ T A F VA QV+ +QR KV+ L Y L Sbjct: 717 LLHAFREGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMS-----SFGLAKNL 771 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + T A + + + + + + + G R + Sbjct: 772 GIETKAAAAYIDRYFQRYPGVKQYMEETKARAKARGYVETVFGR---------RLYLPEI 822 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + P+G + Sbjct: 823 NS-------------------------------------------PNGPRRGAAERAAIN 839 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 + + T L ++ VQ ++A K +++ VHDE+V E P Sbjct: 840 APMQGTAADLIKKAMVA-------VQGE---------LDARKPEVLMIMQVHDELVFELP 883 Query: 638 DTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + + LM A +PL AE + K Sbjct: 884 EGEVDWLRREIPRLMAGVA--ALQVPLLAEVGVGPDWDK 920 >gi|222111840|ref|YP_002554104.1| DNA polymerase i [Acidovorax ebreus TPSY] gi|221731284|gb|ACM34104.1| DNA polymerase I [Acidovorax ebreus TPSY] Length = 922 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 109/699 (15%), Positives = 207/699 (29%), Gaps = 155/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54 +D ET S +L ++ +F + H+ + Sbjct: 349 ALDTETTSLDELR----------AEIVGVSFSVEPGAAAYIPLAHNGPDAPPQLPLAEVL 398 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112 + L+ LE+ + + ++R V + + + T++ + + P L ++ Sbjct: 399 ERLRPWLEDPACPKLGQHVKYDRHVFANH-GIQVRGYA-HDTMLQSYVLEVHKPHGLTSL 456 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E G+ I+ E + P + Y D T ++ Sbjct: 457 AERH--------TGRTGISY----EDLCGKGAKQIPFAQVPVDKAAAYSCEDSDQTLDVH 504 Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L P E I G +D + + +L+QE Sbjct: 505 RVLWPQLQADDKLRGIYELEMACSETLFRIERNGVLIDAGKLAAQSHALGQRILQLEQEA 564 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 ++ + ++L F + G+ + T +T + VL + P ++ Sbjct: 565 YAIAGQP-FNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLE 623 Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R + + L + GR+ A TGR S QN+P + Sbjct: 624 HR-SLCKLKGTYTDKLSTLADPRTGRVHTHYAQAVA-VTGRLSSNEPNLQNIPIRTPEGR 681 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 VR +A G+ + AD + IE R++A ++G++ Sbjct: 682 R-------------------------VREAFVAPAGRVIASADYSQIELRIMAHISGDEA 716 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF G D++ T A F VA QV+ +QR KV+ L Y L Sbjct: 717 LLHAFREGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMS-----SFGLAKNL 771 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + T A + + + + + + + G R + Sbjct: 772 GIETKAAAAYIDRYFQRYPGVKQYMEETKAQAKARGYVETVFGR---------RLYLPEI 822 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + P+G + Sbjct: 823 NS-------------------------------------------PNGPRRGAAERAAIN 839 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 + + T L ++ VQ ++A K +++ VHDE+V E P Sbjct: 840 APMQGTAADLIKKAMVA-------VQGE---------LDARKPEVLMIMQVHDELVFELP 883 Query: 638 DTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + + LM A +PL AE + K Sbjct: 884 EGEVDWLRREIPRLMAGVA--ALQVPLLAEVGVGPDWDK 920 >gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT] gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT] Length = 951 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 101/722 (13%), Positives = 205/722 (28%), Gaps = 178/722 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------- 50 + +D ET + + ++ +F + H Sbjct: 354 DLIAVDTETDALDPMR----------ANLVGISFALTNSEACYIPLAHKQAVKEMTQTDL 403 Query: 51 --------------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 LK LEN + V N ++ T+ I + Sbjct: 404 FTESEQNAEQFELVKNQLNKETCLAQLKPLLENPSIQKVGQNIKYDLTIFANHH---IQL 460 Query: 91 HRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + T++ + + A+ E G ++I E+ + Sbjct: 461 NGVCFDTMLQSYVLDSTGRHNMGALSERY--------LGHQVIEF----ESIAGKGKKQV 508 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQTINDRG 196 + A EY D +T ++ + L + E L + + G Sbjct: 509 TFDKIAIAQATEYAAEDADITMKLHQVLWQELQQSPSLVKVFNDIELPLVKVLSKMERNG 568 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LE 252 +D ++ + T L+Q++ + ++L+ LF + L Sbjct: 569 VLIDSQALLKQSEKIARRLTALEQQVYQEAG-AEFNLASTKQLQEILFTKLALPIIAKTP 627 Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 +T + VL + + ++ ++ + L +N T Sbjct: 628 KGAPSTNEDVLETLAQQGHIVPKLLMEHRGLAKLKSTYTDKLPSMVNKKTGRVHTSYHQA 687 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P + C+R IA + Sbjct: 688 VTATGRLSSSDPNLQNIPIKNEEG-------------------------HCIRQAFIARK 722 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G K++ AD + IE R++A ++ + + AF G+D++ +T A F + +VT +QR Sbjct: 723 GYKIIAADYSQIELRIMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSA 782 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + L Y + L ++ + + + + F ++E E Sbjct: 783 KAINFGLIYGMS-----SFGLSNQLGISRANAQKYMDLYFQRYPGVQTFMVDIREKAKEQ 837 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + G R ++ A + AI A + + Sbjct: 838 GYVETLFGR---------RLYLPEINS-----SNAIRRKGAERVAINAPMQGTAADII-- 881 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 L + N N +Q Sbjct: 882 --------------KLAMIAIHNEIKK--------------------NDIQ--------- 898 Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESK 671 M+ + VHDE+V E + ++++ LM + +PL + Sbjct: 899 -MI----------MQVHDELVFEVKENKVDEYSALIKSLMENAAH--LSVPLIVDIGVGD 945 Query: 672 RY 673 + Sbjct: 946 NW 947 >gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322] gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322] Length = 976 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 109/725 (15%), Positives = 204/725 (28%), Gaps = 177/725 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 L +D ET G+ A D ++ + H Sbjct: 370 LAVDTETT--------GLNASAVD--LVGISMAIAPGQACYIPLRHGATNDSAVGSGVAV 419 Query: 51 --------------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 +K E+ V + HN ++ VL N I + Sbjct: 420 QGGLNFSDDDTPAHYPQLDFETAMAEIKPLFEDPAVLKIGHNLKYDAHVLMRPRNGGINL 479 Query: 91 HRWICTLVLARSNGLP----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 T+ L+ ++ + G L K + Sbjct: 480 APVDDTMCLSYVLDGGRVERHSMDYLA------------GHWLDYTTIKFSDVCGKGAKQ 527 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRG 196 P A +Y D +T ++ L+P E+ L + + + G Sbjct: 528 IPFSELAPEAALDYAAEDADITLRLWMILKPRLAGEKVASVYERLERPLIPVLAQMENYG 587 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD ++ ++ L Q++ +L + ++L LF + GL + Sbjct: 588 ITVDRSILARMSNDFATRMEALAQDILALAG-EDFNIASPKQLGEILFDKMGLQGGKKAK 646 Query: 257 ----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFL 311 +T VL + + ++ + LVE + GR+ + + Sbjct: 647 TGAYSTSADVLEDLAASGVEIASKVLDWRHLAKLKSTYADALVECILPATGRVHTSFSMV 706 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 GA TGR S QN+P + +R+ IA+ Sbjct: 707 GA-STGRLSSSDPNVQNIPIRTSEGR-------------------------QIRTAFIAA 740 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 EG KL+ D + IE R++A +AGEQ ++AF+ G D++ T + F + Q+ + R Sbjct: 741 EGCKLISVDYSQIELRLVAHVAGEQSMIEAFKDGIDIHARTASEVFGIPLDQMDSETRRR 800 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y A L++ S E + + ++ E Sbjct: 801 AKAINFGIIYGISA-----FGLARQLSIPQGEARDYIASYFENFPGIRAYMERIKTEARE 855 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + G + Sbjct: 856 DGFVETLFGRRIH--------------------------------ITGMAGGSAAHRGFA 883 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 ++ N + + + R + + DI Sbjct: 884 ERQAINAPIQ-------------------GSAADIIKRAMIRIPPALQ------AADI-- 916 Query: 612 EGMMNATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMT--SNPSWAKGLPLKAEGY 668 D++L VHDE++ E P + + +M + P +PL AE Sbjct: 917 ---------RADMLLQVHDELIFEAPAADADNAVKHITRIMEAAAAPVVDLKVPLVAEAG 967 Query: 669 ESKRY 673 + + Sbjct: 968 IADSW 972 >gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126] gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126] Length = 936 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 100/702 (14%), Positives = 207/702 (29%), Gaps = 162/702 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 D ET D ++ AF + D + Sbjct: 363 DEFCFDTETTDLEPT----------DAELVGLAFSYVAGEAYYVPFPADQKEAQKIADEF 412 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 KE LEN D+T + N ++ V++ + + + T++ + + E Sbjct: 413 KEVLENEDITKIGQNLKYDIQVMRNY-GVRVQ-GKMFDTMLAHYLLDPETRHNMDVMAE- 469 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + +LI + + EY D +T ++ L Sbjct: 470 -NYLNYSPVSITDLIGK---------KGVKQGNMRDVPVEDVVEYAGEDADITLQLKHIL 519 Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E + L Y+ + G +D +++ ++ + +++ L Sbjct: 520 EKEIKENNLESLLHDVEEPLSYVLAEMEYEGVKIDKDALSKMSKELETAALEAQEKIFEL 579 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + ++L LF + L T+T T + +LS A ++ R Sbjct: 580 AGQ-EFNIASPKQLGEILFDKMKLVDKPKKTKTGQYATGEEILSKLANEHEIADKILEFR 638 Query: 281 MRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L + ++ DGR+ + A+ TGR S QN+P + Sbjct: 639 -EYQKLKSTYVDALPKLISKKDGRVHTDYRQAVAA-TGRLSSNNPNLQNIPIRTEKGR-- 694 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398 +R + E +L+ AD + IE R++A + ++ Sbjct: 695 -----------------------LIRKAFVPRDENYQLMAADYSQIELRIMAAFSQDEAM 731 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++AF+ G D++ TT A+ F V V R K + G++ Sbjct: 732 MEAFKNGRDIHATTAAKVFGVDLDDVDPGMRRKAKEVNF--------------GIIYGIS 777 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A T + KA+ ++ RV Sbjct: 778 ------------------------------AFGLAQNLNISRTEASDIIKAYFKEFPRVH 807 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + ++ + N + GR RD+ + Sbjct: 808 DYMEKVKEDAR--------------------------ANEYVTTILGRKRWLRDINSRNQ 841 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632 + R +Q + D++ M+N K +++ VHDE+ Sbjct: 842 TIRGY---AERNAINAP------IQGSAADMIKIAMINIHKWMEKENLKSKMIMQVHDEL 892 Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + + + LM + +P++ + + Sbjct: 893 IFDAHKDEIDKLKDKVVDLMKNAME--LDVPMEIGVGIADNW 932 >gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506] gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506] Length = 981 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 105/708 (14%), Positives = 205/708 (28%), Gaps = 162/708 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 + +D ET + ++ F+ + H Sbjct: 394 VAVDTETTGLDPM----------QADIVGFSLATAPNEACYVPLSHKGGDEGLFSEGLLP 443 Query: 51 PVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG- 104 +P +K +E+ V + N ++ +LK L I + + T++++ Sbjct: 444 DQIPIPDAVAAIKPLMEHPGVLKIGQNLKYDWLILKR---LGIELGPYDDTMLVSYVLDA 500 Query: 105 --LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 P + + G I K E R A +Y Sbjct: 501 GASPHGMDPLSMRW--------LGHTPI----KFEEVCGKGKGQICFDRAAIDKATDYAA 548 Query: 163 GDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D VT +++ L+P + E+ L + + +RG +D + L+ Sbjct: 549 EDADVTLRLWRVLKPRLAAEGKTTVYETLERPLVTVLAQMEERGITIDRQMLSRLSGEFA 608 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKK 268 +L+ E+ + + ++L LF + + T +T VL + Sbjct: 609 QGMGRLEAEISEMAG-ETFNPGSPKQLGDILFGKMQIPGGRKTPTGAWSTGADVLEELAE 667 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + + + + + + L +N + T L A+ TGR S QN Sbjct: 668 QGHELPRRILDWRQLQKLKSTYTDALPTYVNKETGRVHTSFALAATTTGRLSSSEPNLQN 727 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +P + + +R IA+ G KLV AD + IE R+ Sbjct: 728 IPVRTEEGRK-------------------------IRKAFIAAPGHKLVSADYSQIELRL 762 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF+ G D++ T + F V + + R K + + Y A Sbjct: 763 LAEIADTPSLRQAFQDGLDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISA--- 819 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 L++ E + + + EH + G C Sbjct: 820 --FGLANQLSIPREEAGAYIKRYFERFPGIRAYMDETRNFAREHGYVETLFGRRCHYPDI 877 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + K+ + +A G A +R Sbjct: 878 S--AKNPSIRAFN---ERAAINARLQGSAADIIRR------------------------- 907 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 + L + +S ++ Sbjct: 908 ----------AMARMDAALEKA-------------GLSA----RMLLQVH---------- 930 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 DE++ E PD + ++ M P+ A +PLK + ++ + Sbjct: 931 -DELIFEVPDDEIAATIPVVRETMELAPFPAVALKVPLKVDARAAENW 977 >gi|24376141|ref|NP_720184.1| DNA polymerase I [Shewanella oneidensis MR-1] gi|24351181|gb|AAN57628.1|AE015898_11 DNA polymerase I [Shewanella oneidensis MR-1] Length = 922 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 102/697 (14%), Positives = 198/697 (28%), Gaps = 152/697 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 +D ET S + ++ +F + HD Sbjct: 346 AVDTETTSLDYMV----------AELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFAL 395 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113 + L+ LE+ + V N ++ +VL + + T++ + ++ G Sbjct: 396 EKLRPILEDAKLKKVGQNLKYDISVLANA-GITLQGVA-FDTMLESYVFNSVASRHDMDG 453 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 ALK K ++ + ++ + Y D +T + + Sbjct: 454 LALKYLGHKNIAFED----------IAGKGAKQLTFNQISLETAAPYAAEDADITLRLHQ 503 Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E L ++ I +G +D L ++ + + +L+ + Sbjct: 504 HLWPRLEKEAELASVFTDIELPLIHILSDIERQGVFIDSMLLGQQSEELARKIDELETKA 563 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ F + G + T +T + VL P + Sbjct: 564 YDIAG-EKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLPKVILE 622 Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R ++ + L +N GR+ + A+ TGR S QN+P + Sbjct: 623 HR-SLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTVEGR 680 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R IA EG+K++ AD + IE R++A ++ + Sbjct: 681 R-------------------------IRQAFIAPEGRKILAADYSQIELRIMAHLSQDAG 715 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF G+D++ T A F VT +QR K + L Y A L Sbjct: 716 LLNAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSA-----FGLARQL 770 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 ++ ++ + + + + + G + R R Sbjct: 771 DIPRNEAQTYIDTYFARYPGVLRYMEETRASAADLGYVSTLFGRRLYLPEIRDRNAMRR- 829 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +A G A K+ + + K + Sbjct: 830 ----QAAERAAINAPMQGTAADIIKKAMISIADWIKTDTQGEI----------------- 868 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 M+ + VHDE+V E Sbjct: 869 -----------------------------------AMI----------MQVHDELVFEVD 883 Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + LM + L AE + Sbjct: 884 ADKAETLKQKVCELMAKAA--NLDVELLAEAGIGDNW 918 >gi|88802075|ref|ZP_01117603.1| DNA polymerase I [Polaribacter irgensii 23-P] gi|88782733|gb|EAR13910.1| DNA polymerase I [Polaribacter irgensii 23-P] Length = 980 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 100/706 (14%), Positives = 204/706 (28%), Gaps = 167/706 (23%) Query: 1 MAT--LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMP 54 M + D ET L +I AF ++ D + Sbjct: 405 MKQTAVCFDTETTGLKALEV----------ELIGIAFSYETGKGYYVSFPEDQAETQRIL 454 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLP--SALKA 111 + + E+ + + HN ++ VL +P+ + T++ + Sbjct: 455 EDFRPFFESE-IEKIGHNLKYDIKVLSTY---KMPVKGKLFDTMIAHYLINPDMRHNMDV 510 Query: 112 VGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + E L + E LI + + EY D +T + Sbjct: 511 LAETYLNYQPISIAE---LIGK---------KGKNQLSMRSVPLKEQTEYAVEDADITFQ 558 Query: 171 IFKRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + + + + E L + + G V+ L+ + + +L++ Sbjct: 559 LKQLFTGELENGNVTKLFNDIELPLVSVLTAMEIEGINVNTDFLKELSVALTADIDRLEK 618 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQ 275 + + ++L LF + L T+T T + +LS K Sbjct: 619 SIYEQAG-EEFNIASPKQLGIVLFEKMELVKKPKKTKTGQYATGEDILSYLAKEHDIIKD 677 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R + ++ L +N T + TGR S QN+P + Sbjct: 678 IQEYRQY-KKLQSTYVDALPNEVNPKTGRIHTQYMQAVAATGRLSSNNPNLQNIPIRTAR 736 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394 E VR + E L+ AD + IE R++A ++ Sbjct: 737 GRE-------------------------VRKAFVPRDENHVLLAADYSQIELRIIAALSE 771 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 E+ + AF+ GED++ +T A+ FNV +VT+DQR+ K + + Y + Sbjct: 772 EENMINAFKNGEDIHASTAAKVFNVPLNEVTRDQRSNAKTVNFGIVY-----GVSAFGLS 826 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + + + + + + Sbjct: 827 NQTD---------------------------------------LSRSEAKELIDTYYETY 847 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 ++ + + + R +D+ Sbjct: 848 PKLKAYMSAQVDFARE--HGYVETVLN------------------------RRRYLKDIN 881 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 + + + + +Q + DI+ M+N K ++L V Sbjct: 882 SRNAVVRNGAERN---------AVNAPIQGSAADIIKLAMINIQKRFEKEGFRSRMLLQV 932 Query: 629 HDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V +T + + M +PL E + + Sbjct: 933 HDELVFDTHKDELEIIKPIIKYEMEHAFK--MSVPLDVEVGIGENW 976 >gi|313813472|gb|EFS51186.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1] gi|315106933|gb|EFT78909.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1] Length = 538 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 187/588 (31%), Positives = 257/588 (43%), Gaps = 72/588 (12%) Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGE---THECLYDRNKPN-HREAWRLFGEYCKG 163 +L AVG AL L QK GK LI +FC RN P+ +W F +Y + Sbjct: 2 SLDAVGAALDLDVQKDTAGKRLIKQFCTPATPSVLNGGGTRNLPSSDPTSWAQFIDYNQR 61 Query: 164 DVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 DV V I RL P+ E + + LDQ IND G +D LA + D R Sbjct: 62 DVEVELAIHDRLSSFPIPEAEWDAYALDQRINDTGILLDHTLADAAVALDDQHRAATLAR 121 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 LT + + +LK WL G + L + + L T + +V R Sbjct: 122 ARELTG--LENPNSPIQLKEWL-TTHGCEMSSLAKADVEAALE---SATGKVKEVLELRG 175 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++S+V K + +DGR RG +QF GA RTGR++G + QNLPR + + Sbjct: 176 DLAKSSVKKYQAMHNVTGTDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQAR 235 Query: 342 II---THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 + +L +S +R+ I S G + +VAD + IEARV+AW+AGE Sbjct: 236 TLTRQRNLDALELLYDSVPDTLSQLIRTAFIPSAGCRFIVADYSAIEARVIAWLAGETST 295 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+DLY T +R F V + + R GK+ LA GY G A + M Sbjct: 296 LAAFRDGKDLYCETASRMFGVPVEKHGINAELRQKGKIATLACGYNGSVGALKAMG---- 351 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 A+ + + AWR + Sbjct: 352 ------------------------------------ALRMGLAEHELKPIVDAWRAANPN 375 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVG 574 + LW ++ QA I +A+ R R + L + LPSGR L Y +G Sbjct: 376 IVRLWADVEQAALDAITTRQAVRLRNLR------FTAESGILFITLPSGRRLAYVKPQLG 429 Query: 575 NNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 NR + T R+ R TYGGKL ENIVQAV+RD+L M +AG+ IV+ Sbjct: 430 ENRWGGTSITYSGVTTGRKWGRLETYGGKLVENIVQAVARDLLVHAMTLVAQAGHKIVMH 489 Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDEIV + P+ F + LMT+ P WA GLPL A+GYE YRK Sbjct: 490 VHDEIVIDEPEDSGFTIADACQLMTTPPDWAAGLPLDADGYECDYYRK 537 >gi|218441140|ref|YP_002379469.1| DNA polymerase I [Cyanothece sp. PCC 7424] gi|218173868|gb|ACK72601.1| DNA polymerase I [Cyanothece sp. PCC 7424] Length = 966 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 113/701 (16%), Positives = 225/701 (32%), Gaps = 151/701 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVH--DPVMPQV-----L 57 D ET S +D ++ + + P V H +PQ L Sbjct: 381 DTETTSLEP----------KDTTLVGIGCCWGEQPTEVAYIPLNHTEGEQLPQEEVLSAL 430 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115 LE+ + V N+ F+R VL + + T++ + L + E Sbjct: 431 SVILESENYPKVFQNTKFDRIVLLN-KGIKLA-GVVFDTMLASYVLRPELSHKLSDLCER 488 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L + K ++L + + + YC D T + +L Sbjct: 489 Y-LENIKALNYRDL------------EIPKTQTIAHLSLEKVAHYCGMDAYATFMLVPKL 535 Query: 176 EPLSSKEQELWY-----------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + +L+ + + + G C+D A + L+Q ++ + L+ + Sbjct: 536 IAELKQAPDLYELLLKVEQPLEPVLAEMENTGVCIDTAYLNQLSQQLEQDLQILETKAYE 595 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNN 279 + ++L LF + GL+ + +T L + P + + Sbjct: 596 AAG-ESFNLGSPKQLSEILFEKLGLNKRKSRKLKTGYSTDHATLEKLQGDHPIIDYILEH 654 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ ++ L ++ GR+ + TGR S QN+P + Sbjct: 655 R-TLAKLKSTYVDALPALVHPQTGRVHTDFNQAVTT-TGRLSSSNPNLQNIPIRTE---- 708 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 S +R I + LV AD + IE R+LA ++ E Sbjct: 709 ---------------------FSRQIRKAFITQDDWLLVSADYSQIELRILAHLSQEPVL 747 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+A++ +D++ T F+ +T ++R+IGK + + Y GA Q+ A + GL+ Sbjct: 748 LEAYQNYQDVHRVTAQLLFDKEV--ITSEERSIGKTINFGVIYGMGA---QRFARSMGLS 802 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + +++ + +++ G + + + Sbjct: 803 FQEGKD--FIDKYHQKYARVFEYLERVKKEAIAKGFVTTIKGR------RRYFE------ 848 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + N+L P ++ ++ Sbjct: 849 -------------------------------FFDDKLNHLRGEKP-------ENLDLDKL 870 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634 LN + QL R +Q S DI+ M+ + ++L VHDE+V Sbjct: 871 NLNYSDAQLLRAAANAP------IQGSSADIIKIAMVQLHEILQHYQARLLLQVHDELVF 924 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E P + + + M + +PL + K + Sbjct: 925 EIPPDEWEDLQVKIKDTMENAVK--LTVPLVVDIRSGKNWM 963 >gi|146329645|ref|YP_001209132.1| DNA polymerase I [Dichelobacter nodosus VCS1703A] gi|146233115|gb|ABQ14093.1| DNA polymerase I [Dichelobacter nodosus VCS1703A] Length = 901 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 102/700 (14%), Positives = 203/700 (29%), Gaps = 163/700 (23%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------PQVLK 58 D ET S + + +F + VH + LK Sbjct: 328 FDVETDSLNYM----------QAHWVGISFAVEAGEAWYLPLVHQNGINLPFAETLAALK 377 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA 115 EN + + + F+R +L + + T++++ + + + Sbjct: 378 NLFENASIRKIGQHLKFDRHILARY-GISLN-GVIDDTMLMSYCYNSTATRHNMDDLADF 435 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L + + E + + +Y D +T ++++ Sbjct: 436 Y------------LNKQTIRFEDIAGSGAKQRRFDEIDLETAMQYACEDADITLQLYQFF 483 Query: 176 EPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + + E+ L + + +G + +Q + + L ++ Sbjct: 484 QQKLASEPTLQALYENVERPLAEILWAMEHQGVKIAGDKLAVQSQELAAQLKTLQKQAYQ 543 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKL-TPQAIQVFNN 279 L G V + ++L+ LF L +T + VL +L ++ N Sbjct: 544 LAGG-VFNLDSPKQLQEILFERLALPVIHKTPTGQASTNEEVLQKLAELRQSALPEIILN 602 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + + L E ++ D + T + TGR S QN+P S Sbjct: 603 YRALGKLKSTYTDKLPELIDPDSKRVHTSYHQAVTSTGRLSSSDPNLQNIPIRSDEGRR- 661 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA EG ++ AD + IE R++A ++ ++ Sbjct: 662 ------------------------IRQAFIAEEGYSILAADYSQIELRIMAHLSQDERLQ 697 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ +D++ T A F+VAP V ++QR K + G++ Sbjct: 698 RAFQLQQDIHTATAAELFSVAPEAVDRNQRRDAKAIN--------------FGLIYGMS- 742 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + T + ++ +V Sbjct: 743 -----------------------------AFGLARQLNISRTQAAEYIDKYFHRYPQVLA 773 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + Q +Q + GR L D+ N Sbjct: 774 YMDSARQTAQQ--------------------------QGYVSTLLGRRLYIPDIHNKNM- 806 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVC 634 R R +Q + DI+ M+ + +++ VHDE+V Sbjct: 807 --QRRRAAERLAINAP------MQGSAADIIKLAMVQFWQTYGAQKECRLLMQVHDELVF 858 Query: 635 ETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + H+M +PL + SK + Sbjct: 859 EVATAALDIWQPRITHIMEHALP--LSVPLIVDCGVSKDW 896 >gi|282891035|ref|ZP_06299540.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499028|gb|EFB41342.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 896 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 111/701 (15%), Positives = 212/701 (30%), Gaps = 161/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC---VHDPVMPQVLK 58 + D ET L ++ FG + + + +K Sbjct: 327 KQICFDTETTDIQPLK----------AELVGIGFGIHPKKAWYVPLNGKLGKQRVLEGVK 376 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA 115 EN+ + HN ++ VL+ + I + T++ + +L+ + Sbjct: 377 PLFENSAIGFYGHNVKYDWHVLQN-EGIQIQ-NICFDTILASYILNAHSRQHSLEVLA-- 432 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L+ + ELI EYC DV T + + L Sbjct: 433 LEYFGKVTIPISELI----------GKGKNVLSMRDVPIERVTEYCCEDVDFTCRLKEVL 482 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E E L + + RG VD+ L++ + E L + + ++ Sbjct: 483 EKQLKERDLLNLYHQIELPLLVVLAKMERRGIYVDIPYLEQLSKELTQELKTLQESIYTM 542 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMR 282 + +++ LF++ G+ T +T VL K P A ++ R+ Sbjct: 543 AG-EEFNLNSPKQVSELLFIKLGIPAPKKTATGHSTSAEVLEFLKNDYPLAGKILEYRL- 600 Query: 283 ASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ L + R+ T A+ TGR S QN+P + + Sbjct: 601 LEKLRSTYVDALPSQVIPRTHRIHSTFNQSVAA-TGRLSSQDPNLQNIPIRTEEGRK--- 656 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R EG + AD + IE R+LA ++ + + Sbjct: 657 ----------------------IRGAFRPEKEGWSFLSADYSQIELRLLAHLSQDPVLMA 694 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ ED++ T A F + QV+K+QR K + G Sbjct: 695 AFQNNEDIHTYTAASMFEIPLEQVSKEQRYQAKAIN--------------FGIIYG---- 736 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + A E + + Q++ ++ E Sbjct: 737 --------------------------QQAFGLARELGIEVKQASKFITMYFQRYPKIKEY 770 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 L Q+ E GK++ +GR + ++ + Sbjct: 771 ---LDQSKENARATGKSVTL-----------------------TGRERIIPEILSKNM-- 802 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVC 634 R +Q + D++ M+ + ++L +HDE++ Sbjct: 803 -QIRAAAERLA------VNTPLQGTAADLIKMAMLKMDEEIEKQHLKGFMILQIHDELIF 855 Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674 E PD + S L +M S + L + K ++ Sbjct: 856 EIPDEEISLFSQLVPEVMQSVM--LLNVSLVVDINIGKNWK 894 >gi|329912725|ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480] gi|327545555|gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480] Length = 914 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 104/695 (14%), Positives = 193/695 (27%), Gaps = 150/695 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 ID ET S + L ++ + + H ++ Sbjct: 340 SIDTETTSLVPL----------QAQLVGISLCCEPGVAAYIPVAHRYADAPVQLSRELVL 389 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++ LE+ V N ++ + + + T++ + + Sbjct: 390 GKMQAWLEDPAKAKVGQNLKYDSHIFANH-GITLRGIA-HDTMLESYVFESHRSHDMDSL 447 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ L + + EY D +T ++ + Sbjct: 448 ALRH----------LGRTTITFQEVCGKGASQICFDQVDIARATEYAAEDADITLQLHQA 497 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P E + Q I G +D + + + +++ Sbjct: 498 MLPQVTSDEGLLFVYEKIEVPTAVVLQKIERNGVLIDTGILQVQSHELGKRMLEIETSAY 557 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L + +++ F + L + T + T + VL+ + P + Sbjct: 558 ELAGQP-FNLNSPKQIGEIFFEKLQLPVVKKTPSGAPSTDEEVLAKLAEDYPLPKVLLEY 616 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L + ++ T + TGR + QN+P + Sbjct: 617 R-SLSKLKSTYTDKLPKMIDPTTGRVHTNYAQTVAVTGRLASNEPNLQNIPIRTAEGRR- 674 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A G +V AD + IE R++A ++G+ L Sbjct: 675 ------------------------IREAFVAPAGSVIVSADYSQIELRIMAHLSGDANML 710 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G D++ T A F+ A VT +QR KV+ L Y A L + Sbjct: 711 RAFADGIDIHRATAAEIFSTGAADVTTEQRRYAKVINFGLIYGMSA-----FGLAGNLGI 765 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + F + H + G Sbjct: 766 ERGAAQSYIDKYFARFSGVKQFMDETRLKAKAHGYVETVFGR-----------------R 808 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 LW + P+G G R+ Sbjct: 809 LW-----------------------------------LPEINSPNGPRRQ----GAERAA 829 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 +N + KL+ VQ + +V+ VHDE+V E P Sbjct: 830 INAPMQG---TAADLIKLSMVAVQG---------WLETDGLKSLMVMQVHDELVLEVPQE 877 Query: 640 DEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + L LM +PL AE K + Sbjct: 878 ELELVRVKLPALMAGVAE--LKVPLTAEVGIGKNW 910 >gi|332519119|ref|ZP_08395586.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4] gi|332044967|gb|EGI81160.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4] Length = 953 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 94/700 (13%), Positives = 204/700 (29%), Gaps = 162/700 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59 + D ET LT ++ AF ++ D + + L+ Sbjct: 382 VCFDTETTGLNPLT----------AELVGIAFSWETGKGFYLPFPEDKQEAQAIIEALRC 431 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE-AL 116 E ++ + N ++ VL N+++ T++ + + E L Sbjct: 432 FFEAENIQKIGQNLKYDIKVLAKY-NVEVK-GPLFDTMLAHYLINPDMRHNMDVLAETYL 489 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + E LI + EY D +T ++ + E Sbjct: 490 NYTPVSITE---LIGK---------KGKNQLSMRDVPLDKQTEYAVEDADITLQLKEHFE 537 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + + G +D +L+ ++ + L ++ + Sbjct: 538 KELGEANTQKLFDDIEVPLLRVLAAMELEGINLDKDFLQSLSNDLNRDIEALVTKIYDVA 597 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L LF + L T+ T + +LS K + R Sbjct: 598 G-EEFNIASPKQLGIILFEKLKLVDKPKKTKTGQYKTGEDILSVLAKDHEIIRNILEYR- 655 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ ++ L + T + TGR S QN+P + Sbjct: 656 GLAKLKSTYVDALPLQVEESTGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGR---- 711 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 VR I + L+ AD + IE R++A ++ E+ ++ Sbjct: 712 ---------------------QVRKAFIPRNDDYTLLAADYSQIELRIIAALSKEETMIE 750 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ GED++ +T ++ F V +VT+ QR+ K + + G++ Sbjct: 751 AFKNGEDIHASTASKVFGVPIEEVTRAQRSNAKTVNFGII--------------YGVSAF 796 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 ++ + + + + + ++ + Sbjct: 797 GLSNQTD------------------------------LSRGEAKELIDTYYETYPKLKKY 826 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 +E N + R +D+ + + + Sbjct: 827 MSEQVHFARD--------------------------NGYVKTILDRRRYLKDINSRNAVV 860 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 + +Q + DI+ M+N ++L VHDE+V Sbjct: 861 RGAAERN---------AVNAPIQGSAADIIKIAMINIYNKLEAGNYKTKMLLQVHDELVF 911 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + +++ M + +PL E + Sbjct: 912 DVYKPELEKMTTLIKTEMENAFK--MEVPLDVEVDTGLNW 949 >gi|171911947|ref|ZP_02927417.1| DNA polymerase I [Verrucomicrobium spinosum DSM 4136] Length = 971 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 208/699 (29%), Gaps = 159/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEA 60 D ET L+ ++ AF H + + + + +K Sbjct: 398 CFDTETDGLDPLS----------ARMLGIAFSIAPHEGCYFHIPEERDEHLAVLKEVKTF 447 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 L + + HN F+ V A +++ + T+++ + + E Sbjct: 448 LSTSKAEKIGHNLKFDLRVFLAH-GIEVA-GPFFDTMLVHALVEPDQRHGMDYLSERY-- 503 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 LI K EY D VT ++ ++L P Sbjct: 504 LGYSPVSITTLIGEKKGATP-------QKSMAEVPLEPLAEYAAEDADVTLQLSQKLRPE 556 Query: 179 SSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + E L + + G VDV Q + + L + ++ Sbjct: 557 LERLGLMKVFYEIEAPLLPVLAHMEHEGVKVDVPTLEEFGQELLSQANVLRERIQGYVDW 616 Query: 229 LVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + ++L LF L T T T ++ L + + P + R Sbjct: 617 P-FNLNSPKQLGEVLFDHLKLMEKPKKTATGQYQTNEQTLLTLQGRHPIIDDILAYR-EC 674 Query: 284 SRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ ++ L A+N R+ T L A+ TGR + QN+P + E Sbjct: 675 TKLKSTYVDALPAAVNPLTHRVHTTFHQLMAA-TGRMASTDPNLQNIPIRTDQGRE---- 729 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R + EG L+ AD + IE RV+A ++ + ++A Sbjct: 730 ---------------------IRKAFVPEKEGWVLMSADYSQIELRVMAELSADPAMMEA 768 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F+ G D++ T A+ + VA +V + R K++ + Y A + Sbjct: 769 FQEGHDIHQATAAKVYGVALDEVLPEMRRTAKMVNFGIIYGISAFGLSQ----------- 817 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 T ++ + + +++ V Sbjct: 818 --------------------------------RLGNTSRTEAAQIIENYFKQYPGVKRYM 845 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 ++ + +GR RD+ ++ + Sbjct: 846 EDIVTQART--------------------------QGYVETLTGRRRYLRDINSSNMTVR 879 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635 + T R +Q + D++ M+N ++ ++L VHDE++ E Sbjct: 880 SAT---ERVAMNAP------IQGTAADMIKLAMVNVARSLREGGFKTRMLLQVHDELLFE 930 Query: 636 TPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 P + + M +P+ E K + Sbjct: 931 VPLEEVDKVKPVIEQGMREALP--LKVPVLVEAGTGKTW 967 >gi|77164079|ref|YP_342604.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707] gi|254436145|ref|ZP_05049652.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27] gi|76882393|gb|ABA57074.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707] gi|207089256|gb|EDZ66528.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27] Length = 903 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 106/698 (15%), Positives = 193/698 (27%), Gaps = 155/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + Y E ++ +F H H+ + Sbjct: 328 AFDLETNNLD---------YIE-AEIVGLSFAIQPHEAMYIPLGHEDATAPPQLPREQVL 377 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 LK LE+ V N F+ VL +++ R +++ + + + Sbjct: 378 ARLKPLLEDPRHGKVGQNLKFDCNVLANY-GIELQGIR-HDSMLESYVLDSTATRHNMDS 435 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + K L E + P ++ Y D ++ ++ Sbjct: 436 LAL------------KYLQRTTITYEMVAGKGAKQLPFNQVTIEKAAPYAAEDADISLQL 483 Query: 172 FKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 P +E+ L + + G V+ + + +L+Q Sbjct: 484 HHCFWPRLQQEEGLRQLYQELEIPLIPVLSRMERNGVQVNTEQLKAQSDELAARLKRLEQ 543 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 E L + ++++ L+ + L + T +T + VL P + Sbjct: 544 EAFELAG-ESFNLASPKQIQAILYEKLKLPVTRKTPTGQPSTAETVLQELALDYPLPQLL 602 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R S+ + L +NS T + TGR S QN+P S Sbjct: 603 LEYR-TLSKLKSTYTDRLPLQVNSHTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRSTEG 661 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA G +LV AD + IE R++A ++ ++ Sbjct: 662 RR-------------------------IRQAFIAPPGYRLVAADYSQIELRIMAHLSEDE 696 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AFE ED++ T F VT +QR K + L Y A + Sbjct: 697 GLLAAFEAEEDIHQRTATEIFRTPLEDVTPEQRRSAKAINFGLIYGMSAHGLGR-----Q 751 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L +N A + + + + + + + + G + RQ Sbjct: 752 LGINRTAAQHYIERYFQRYPGVKAYMENICQQARQKGYVETLFGRRLYLPEIHSRQT--- 808 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + N+ + G A KR Sbjct: 809 --QRRNQAERTAINAPMQGSAADIIKR--------------------------------- 833 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 + R L + M+ + VHDE+V E Sbjct: 834 --AMIHADRWLQEQKANAR------------------MI----------MQVHDELVFEV 863 Query: 637 PDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PL E + Sbjct: 864 AEDKLEATIRAIRENMAAAAQ--LKVPLIVEIGSGTNW 899 >gi|329888727|ref|ZP_08267325.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568] gi|328847283|gb|EGF96845.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568] Length = 964 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 101/723 (13%), Positives = 196/723 (27%), Gaps = 183/723 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49 + D ET + + + + H Sbjct: 369 VVGFDTETDALSST----------HAGLCGVSLAVGPNEACYIPLTHEHEPTGDGGLDFG 418 Query: 50 -------------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 P LK+ LE+ V V N ++ V+ + + Sbjct: 419 DGGDARPPLQQIDKPTALARLKDLLEDPSVLKVGQNIKYDLAVMAR---RGVRVAPIDDV 475 Query: 97 LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 ++++ + + + G E I K Sbjct: 476 MLISYVLEGGLHGHGMDELAR--------LHLGHEPIPFKS----VAGTGKSQKSFKHVE 523 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVAL 203 + Y D VT + + L+P + E+ + + + G VD Sbjct: 524 LKSAVCYAAEDADVTLRLHRLLKPRLAAEGLSNVYETLERGMPAVLADMERAGVRVDPDR 583 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TC 259 +L+ +L++E L + ++ LF E L T + T Sbjct: 584 LRSLSSTFGQRMAELEEEAHKLAGRP-FNVGSPRQIGEILFGEMNLPGGKKTASGQWGTD 642 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + P + + R S+ + LV AM+ T L A+ TGR Sbjct: 643 ASVLEDLAQSHPLPRTILDWRQ-LSKLKGTYTDALVAAMDPQTNRVHTSYQLAAATTGRL 701 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 + QN+P + + +R IAS G L+ A Sbjct: 702 ASSDPNLQNIPIRTETGR-------------------------QIRQAFIASPGHVLISA 736 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R+LA + +AF++G D++ T + F V + + R K + + Sbjct: 737 DYSQIELRLLAHIGDIPELKRAFKSGLDIHAATASEMFGVPVEGMPSETRRRAKAINFGI 796 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 G++ A + + Sbjct: 797 I--------------YGISAFGLAAQLGIDQG---------------------------- 814 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 K + ++ + + + ++ Sbjct: 815 --EAGAYIKTYFERFPGIRDYMDRTKALVKE--------------------------QGF 846 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN--- 616 + GR + + + R +Q + DI+ M+ Sbjct: 847 VTTVFGRRIHIPAIHSKSGAERQF---GERAAINAP------IQGAAADIIRRAMIRMPG 897 Query: 617 -ATKAGY--DIVLTVHDEI-VCETPDTDEFNASMLYHLMTSN--PSWAKGLPLKAEGYES 670 +AG ++L VHDE+ E +++ +M P+ A +PL E + Sbjct: 898 ALAEAGLQTRMLLQVHDELVFEAPEAEAERAVAVIRRIMEGAALPAVALSVPLDVEAKAA 957 Query: 671 KRY 673 + Sbjct: 958 GNW 960 >gi|315497503|ref|YP_004086307.1| DNA polymerase i [Asticcacaulis excentricus CB 48] gi|315415515|gb|ADU12156.1| DNA polymerase I [Asticcacaulis excentricus CB 48] Length = 953 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 99/718 (13%), Positives = 200/718 (27%), Gaps = 179/718 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------- 51 +D ET S ++ + H Sbjct: 362 AVDTETDSLSATASG----------LVGVSLSCAPGSGVYIPLSHQSDDGGLALSGDEFK 411 Query: 52 -----VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106 LK LE+ V V N ++ +V I + + T++++ Sbjct: 412 QIALVEALAELKPLLEDPTVLKVGQNIKYDLSVFARY---GIRVAPYDDTMLISYVLEGG 468 Query: 107 ---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 + + E + G I + K + EY Sbjct: 469 LHGHGMDELSE--------LHLGHTPIPF----KQVAGTGKSAKSFKFVDLKPATEYAAE 516 Query: 164 DVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 D +T ++ L+P ++++ + + + G +D + L+Q V Sbjct: 517 DADITLRLWHVLKPQLAQKRLLTVYETLERAMPTVLSDMELAGVRIDPQVLRLLSQDFGV 576 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL 269 +++ E ++ + ++L F E L T T T +VL + Sbjct: 577 RMGEIETEAHTVAGHP-FNLNSPQQLGAIFFDEMALPGGKKTATGQWATDVKVLEEIAEK 635 Query: 270 TPQ-----AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 ++ + + ++ + LVE + + T L ++ TGR S Sbjct: 636 GTHDQGQRLARLLLDYRQMAKLKGTYTDALVEYADPQTQRIHTSYQLASTTTGRLSSNEP 695 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P + + +R+ +A G KL+ AD + I Sbjct: 696 NLQNIPIRTLEGRK-------------------------IRTAFVARAGHKLISADYSQI 730 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA + KAF+ G D++ T + F V + + R K + Sbjct: 731 ELRLLAHIGDIGQLKKAFQDGIDIHALTASEMFGVPVEGMPSEVRRRAKAINF------- 783 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 G++ + Sbjct: 784 -------GIIYGIS------------------------------AFGLGNQLGIDNQEAG 806 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 R K + ++ + + + + T + Sbjct: 807 RYIKTYFERFPGIKAYMDAAKEQVKAT--------------------------GYVETIF 840 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKA 620 GR + D+ + R +Q + DI+ M+ A Sbjct: 841 GRRIHIPDIHAKSAGQR---AFAERAAINAP------IQGTAADIIRRAMIRMPGALEAA 891 Query: 621 GYD--IVLTVHDEIVC-ETPDTDEFNASMLYHLMTSNPSWAKG--LPLKAEGYESKRY 673 G ++L VHDE++ E +++ +M A +PL+ E + + Sbjct: 892 GLTTTMLLQVHDELIFEAPEAEVEAAKAVIVEVMKHAALPALDISVPLEVEAKAADNW 949 >gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS] gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS] Length = 950 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 106/700 (15%), Positives = 196/700 (28%), Gaps = 164/700 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEA 60 +D ET S T + + + LK Sbjct: 380 AVDTETTSLDTFT----------AELAGISCSVKPGEAFFVYFGTPGLDAKTTVARLKPL 429 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 LEN ++ N ++ VLK +++ T++ + L + Sbjct: 430 LENPEIPKTGQNLKYDILVLKKY-GVELAPVG-FDTMLASYVLNPEARHNLDDMAALY-- 485 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 L + K + R +Y D + + LE Sbjct: 486 ----------LGRQTTKYTELVGTGKQTIGIFEVEPRKLSDYACQDADIALRLRYSLEEQ 535 Query: 179 SSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 K EL + + +G +D A L+ V E L + + T Sbjct: 536 LEKTPELLEVCRKLEFPLVRVLADMEHKGISIDTAHLEQLSIKVTGELATLTERIFEATG 595 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L LF L + T+ +T +VL L P A + R Sbjct: 596 -ETFNIDSPKQLGHILFDVLKLPAKKATKTGYSTNVQVLEELAMLHPVASDLLEYR-SLQ 653 Query: 285 RSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L + +N GR+ + + TGR S QN+P + +E Sbjct: 654 KLKSTYIEALPKMINPLTGRVHTSFNQSI-TATGRLSSSNPNLQNIPIRTELGKE----- 707 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R I S G L+ AD + IE R+ A ++G+ ++AF Sbjct: 708 --------------------IRRAFIPSNPGNLLLSADYSQIELRIAAELSGDPMLIEAF 747 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 ED++ T F+ ++T D R G+ Sbjct: 748 RNHEDIHAATARVIFDT--KEITPDMRRKA--------------KEVNFGVLYGIQPFGL 791 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + + + + K+ + ++ Sbjct: 792 SQR------------------------------LGIPQKEAKEIIDTYMAKYPGM---FS 818 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 L E+ + G GR D+ + S Sbjct: 819 SLQTIIEEAKKKGYVTTL-----------------------MGRRRYVPDLNSANS---N 852 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 + R +Q + DI+ M + ++ ++L VHDE++ E Sbjct: 853 IRKAAERVTMNTP------IQGTAADIIKFAMCSISRELKKGEFRSAMLLQVHDELLFEM 906 Query: 637 PDTDEFNASMLYHL-MTSNPSWA--KGLPLKAEGYESKRY 673 P +E + M S K +P++ + K + Sbjct: 907 PPDEEARLREMVERNMIEAASKCGLKNVPVEVDTGSGKNW 946 >gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624] gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624] Length = 931 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 100/701 (14%), Positives = 203/701 (28%), Gaps = 160/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----L 57 + D ET S ++ + ++ AF ++ H D + + L Sbjct: 358 KEVCFDTETTSLDEM----------EAQIVGLAFSWEVHKGYYILFPEDFSLAKEWLSLL 407 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K E ++ + N ++ +L ++++ + T++ + + EA Sbjct: 408 KPFFEAENILKIGQNLKYDLKILANY-DIEVR-GQLFDTMIAHYLLNPDMRHNMDLLAEA 465 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 S + LI + L EY D VT ++ Sbjct: 466 Y--LSYAPVAIETLIGK---------KGKGQLSMCSVPAELQKEYAVEDTDVTLQLKHTF 514 Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 PL K++ L + + G VD A L++ ++ + L + Sbjct: 515 LPLLEKDKMTPLFTEVEAPLVRVLAQMEYEGIAVDTAFLSQLSKEINTDLIALQTAIFEQ 574 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLTPQAIQVFNNR 280 + ++L LF + L + T + VLS P V R Sbjct: 575 AG-ESFNLSSPKQLGDILFEKLKLLSKPKKTKTGQYATSEEVLSELASQHPIVANVLEFR 633 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + + L +N T + TGR S QN+P + Sbjct: 634 -ALQKLQSTYTDALPREVNPRTGRIHTTFMQAVTATGRLSSNQPNLQNIPIRTPRG---- 688 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R + E L+ AD + IE R++A ++ E + Sbjct: 689 ---------------------SQIRKAFVPRDENYTLLSADYSQIELRIIAALSEETHMI 727 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G+D++ +T A+ F V VTK+QR+ K + + Sbjct: 728 EAFLDGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGII------------------- 768 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + + + + + Q + ++ Sbjct: 769 -------------------------YGVSAIGLSQQTSLSRSQSKELIDTYYQTYPKLKT 803 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + + GR D+ + Sbjct: 804 YIEQQIFFARE--------------------------HGYVQTLLGRRRYLPDIHSRNQV 837 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633 + + +Q + DI+ M+ K ++L VHDE++ Sbjct: 838 VRGAAERN---------AVNAPIQGSAADIIKIAMVRIAERLEKEKLATRMLLQVHDELL 888 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + P + ++ M +A +PL E + Sbjct: 889 FDVPKRELEVVTPLIREEMGHA--YALSVPLIVEIGTGNNW 927 >gi|330977284|gb|EGH77239.1| DNA polymerase I [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 921 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 104/689 (15%), Positives = 196/689 (28%), Gaps = 158/689 (22%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +D+ R T++ + + + + K Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G Y + +T + + + Sbjct: 457 YLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 516 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VL+ + +V S+ + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ + A TGR S QN+P + Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + G++ A + Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ V + Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLNYMERTRAQAAE- 804 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR L D+ + + R Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 836 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ + M+ ++L VHDE+V E + Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQVS 890 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ A +PL E + Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGHNW 917 >gi|302188971|ref|ZP_07265644.1| DNA polymerase I [Pseudomonas syringae pv. syringae 642] Length = 921 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 103/689 (14%), Positives = 195/689 (28%), Gaps = 158/689 (22%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKIKVGQHAK 406 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +D+ R T++ + + + + K Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G Y + +T + + + Sbjct: 457 YLTHTPINFQDIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 516 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VL+ + +V S+ + Sbjct: 576 KQLGVILYEKLGMPVLSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ + A TGR S QN+P + Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + G++ A + Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ V + Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLNYMERTRAQAAE- 804 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR L D+ + + R Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 836 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ + M+ ++L VHDE+V E + Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQIS 890 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ A +PL E + Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|237797957|ref|ZP_04586418.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020808|gb|EGI00865.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6] Length = 921 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 106/689 (15%), Positives = 196/689 (28%), Gaps = 158/689 (22%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERTVLKAC-------FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +D+ R T++ + + + + K Sbjct: 407 FAINLLANCAIGGDQAHGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G Y + +T + + E Sbjct: 457 YLTHTPVNFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFETRLAAIPTLQP 516 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L+ E ++ + Sbjct: 517 VLSDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALECEAFAIAG-EEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VLS + +V S+ + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLSELAEQDFPLPKVLMQYRSMSKLKSTYTD 635 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ + A TGR S QN+P + Sbjct: 636 RLPEQINPRTGRVHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLARDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + G++ A + Sbjct: 730 TAAEVFGVELEGVTNDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ V + + Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE- 804 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR L D+ + + R Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNP---SLRKGAERMA 836 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ + M+ ++L VHDE+V E + Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVEQIS 890 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ A +PL E + Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|331014880|gb|EGH94936.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 921 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 102/689 (14%), Positives = 195/689 (28%), Gaps = 158/689 (22%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ + V ++ Sbjct: 347 AQRAQLVGLSFAIQPHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +++ R T++ + + + + K Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G Y + +T + + E Sbjct: 457 YLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 517 VLNEIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VL+ + +V S+ + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ + A TGR S QN+P + Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + F V VT D R K + G++ A + Sbjct: 730 TASEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ V + + Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRTQAAE- 804 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR L D+ L R Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNPSLRN---GAQRMA 836 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ + M+ ++L VHDE+V E + Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQIS 890 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ A +PL E + Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|28867575|ref|NP_790194.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000] gi|28850810|gb|AAO53889.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000] Length = 925 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 102/689 (14%), Positives = 195/689 (28%), Gaps = 158/689 (22%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ + V ++ Sbjct: 351 AQRAQLVGLSFAIQPHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 410 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +++ R T++ + + + + K Sbjct: 411 FAINLLANCAIGGDQAQGIELQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 460 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G Y + +T + + E Sbjct: 461 YLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 520 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 521 VLNEIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 579 Query: 237 EKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VL+ + +V S+ + Sbjct: 580 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 639 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ + A TGR S QN+P + Sbjct: 640 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 685 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 686 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 733 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + F V VT D R K + G++ A + Sbjct: 734 TASEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 774 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ V + + Sbjct: 775 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRTQAAE- 808 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR L D+ L R Sbjct: 809 -------------------------QGFVETIFGRRLYLPDINAKNPSLRN---GAQRMA 840 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ + M+ ++L VHDE+V E + Sbjct: 841 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQIS 894 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ A +PL E + Sbjct: 895 EQIRPHMSGAAELA--VPLLVEVGVGNNW 921 >gi|258648865|ref|ZP_05736334.1| DNA polymerase type I [Prevotella tannerae ATCC 51259] gi|260850887|gb|EEX70756.1| DNA polymerase type I [Prevotella tannerae ATCC 51259] Length = 921 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 102/699 (14%), Positives = 200/699 (28%), Gaps = 159/699 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLK 58 + +D ET + ++ +F + ++L+ Sbjct: 350 KVALDTETTDKEAIK----------AKLVGMSFSTAPGRAWYIPVSRETDTVKARLELLR 399 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 E DV IV N ++ TVL + + P R T++ + + Sbjct: 400 PFWEKADVLIVGQNLKYDLTVLASY-GVK-PKGRLFDTMLSHYVVQPELAHNMDYLASVY 457 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + ++LI + + EY D VT + LE Sbjct: 458 --LNYRPIPIEQLIG---------PKGRGQRNMGDLDPKDVFEYACEDADVTLRLMAPLE 506 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + + G C+D ++ KL+ E+ L Sbjct: 507 KAMRENGVEQIFYDIEMPLMPVLARMERNGVCLDTNALQEISSEFTARMVKLEAEIYQLA 566 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 +++ LF E + + T++ T + VL ++ +R Sbjct: 567 GHP-FMITSPKQVGEVLFGELKIDEKAKKTKSGQYSTSEEVLVRLSHKHEIVGKILAHR- 624 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L + +N T + TGR S QN+P E Sbjct: 625 GLKKLLSTYVEALPKLVNPQTGHLHTTFNQAVTSTGRLSSSNPNLQNIPVRGEDGRE--- 681 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R I G AD + IE R++A ++ + ++A Sbjct: 682 ----------------------IRKAFIPEAGDVFFSADYSQIELRIMAHLSKDPHLIEA 719 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F+ GED++ T AR F ++V++D+R K G++ Sbjct: 720 FKKGEDIHAATAARIFKKDLSEVSRDERRKAKTAN--------------FGIIYGISAFG 765 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 A + T + + + +V E Sbjct: 766 LAERMD------------------------------VSRTEARELIDNYFSTYPKVKEYM 795 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + + + GR D+ ++ + + Sbjct: 796 DSSIEKARR--------------------------RGYIETAFGRRQYLADINSHNAVVR 829 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635 R +Q + DI+ M+ + ++L VHDE+ Sbjct: 830 GY---AERVAVNAP------IQGTAADIIKLAMIRIDQRLRAEGLKTKMILQVHDELNFS 880 Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P + A ++ M S + +PL+A+ K + Sbjct: 881 IPPAELECAKAIIVSEMESA--YQMSVPLEADCGTGKNW 917 >gi|119356373|ref|YP_911017.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266] gi|119353722|gb|ABL64593.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266] Length = 946 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 108/701 (15%), Positives = 204/701 (29%), Gaps = 164/701 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59 L +D ET S ++ + V +LK Sbjct: 375 LAVDTETTSLD----------TFQAELVGISLSIKPKQAWFVYFGKGGVDRRVALDMLKP 424 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117 LEN + N ++ VLK +DI T++ + L + L+ Sbjct: 425 VLENPSLRKTGQNLKYDLLVLKKY-GIDINPVA-FDTMLASYVLDPEAKHNLDDLA--LR 480 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 S K EL+A + +Y D + + + + Sbjct: 481 HLSIKTTTYDELVAD----------GKKKMSILDVPPGELSDYACQDADLALRLQEVFKE 530 Query: 178 LSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 +E+ L + T+ G +D V + +L +++ + Sbjct: 531 KLLQEKDLLWLCENIEFPLVPVLATMEYHGISIDTDHLKKTETTVSKQIGQLSEKIFEAS 590 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRA 283 V + ++L LF GL T+ +T +VL + P A + R Sbjct: 591 G-RVFNLDSPKQLAHILFDILGLPSGKATKTGFSTNVQVLEDLAPIHPVAQDLLEYR-SL 648 Query: 284 SRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + + L + +N G+L + + TGR S QN+P + +E Sbjct: 649 QKLRNTYIEALPKMINPLTGKLHTSFNQHV-TATGRLSSSHPNLQNIPIRTLIGKE---- 703 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R I S L+ AD + IE RV A ++G++ ++A Sbjct: 704 ---------------------IRRAFIPSNPENLLLSADYSQIELRVAAEISGDEKLMEA 742 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F ED++ T FN ++T + R G+ Sbjct: 743 FRNREDIHSATARTIFNTT--EITPEMRRKA--------------KEVNFGVLYGI---- 782 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + + + +K+ + Sbjct: 783 --------------------------MPFGLSRRLNISRNEAKNIIDTYTEKYPGIF--- 813 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 A +Q I +GK + GR D+ + + Sbjct: 814 ----NALQQIISDGKE-------------------RGYVSTLLGRRRYIPDLNSRNKNM- 849 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCE 635 + R +Q + DI+ M + K ++L VHDE++ E Sbjct: 850 --QKAAERAAMNTP------IQGTAADIIKCAMNLCSTQLRLHKMKSVMLLQVHDELLFE 901 Query: 636 TPDTDEFNASMLY-HLMTSNPSWAK--GLPLKAEGYESKRY 673 TP+ ++ L +M +P++ + K + Sbjct: 902 TPENEKHRLKTLVEEVMIDAAKRCGLHNVPVEVDTGIGKNW 942 >gi|213971016|ref|ZP_03399137.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1] gi|301385579|ref|ZP_07233997.1| DNA polymerase I [Pseudomonas syringae pv. tomato Max13] gi|302058837|ref|ZP_07250378.1| DNA polymerase I [Pseudomonas syringae pv. tomato K40] gi|302132134|ref|ZP_07258124.1| DNA polymerase I [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924252|gb|EEB57826.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1] Length = 921 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 103/689 (14%), Positives = 196/689 (28%), Gaps = 158/689 (22%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ + V ++ Sbjct: 347 AQRAQLVGLSFAIQPHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +++ R T++ + + + + K Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G Y + +T + + E Sbjct: 457 YLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 517 VLNEIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VL+ + +V S+ + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ + A TGR S QN+P + Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + F V VT D R K + G++ A + Sbjct: 730 TASEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ V + + Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRTQAAE- 804 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR L D+ L R Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNPSLRN---GAQRMA 836 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M+ ++L VHDE+V E + S Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQIS 890 Query: 646 -MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ A +PL E + Sbjct: 891 GQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188] gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188] Length = 976 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 100/709 (14%), Positives = 199/709 (28%), Gaps = 162/709 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 L D ET S + ++ F+ H Sbjct: 388 VLAFDTETTSLDPM----------QAELVGFSLALAPGRAAYIPLQHKSGAGDLLGGGMV 437 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 LK LE+ V +A N ++ V++ I + T++++ Sbjct: 438 EGQIPLDEALAALKIVLEDASVLKIAQNMKYDWLVMRRH---GINTVSFDDTMLISYVLD 494 Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E G I + Y Sbjct: 495 AGTGSHGMDPLSERW--------LGHTPIPY----KDVAGSGKSAVSFDMVDLDRATAYA 542 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P E+ L + + +RG VD + L+ + Sbjct: 543 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLACMEERGIAVDRQVLSRLSGDL 602 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + E+ L + ++L LF + L T+ +T +VL Sbjct: 603 AQAAAAYEDEIYELAG-ERFNIGSPKQLGDILFGKMSLSGASKTKTGQWSTSAQVLEDLA 661 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + ++ + L +N + + T + ++ TGR S Q Sbjct: 662 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPETKRVHTSYAMASTSTGRLSSSDPNLQ 721 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R+ IA G KLV AD + IE R Sbjct: 722 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLVSADYSQIELR 756 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 757 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA-- 814 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 L++ + E + +++ + E+ + G Sbjct: 815 ---FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFARENGYVETIFGRRAHYP- 870 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 R + +V +A G A +R + + + Sbjct: 871 -DIRASNPQVRAFN---ERAAINAPIQGSAADIIRRAMIRMEDALAE------------- 913 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 Q ++ ++ Sbjct: 914 -----------------------------------QNLAA----RMLLQVHD-------- 926 Query: 628 VHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 E++ E PD + ++ H+M + P+ + +PL + + + Sbjct: 927 ---ELIFEVPDNEVEKTIPVVRHIMENAAMPAVSLAVPLHVDARAAHNW 972 >gi|207723739|ref|YP_002254137.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2] gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2] Length = 944 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 100/701 (14%), Positives = 189/701 (26%), Gaps = 147/701 (20%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 + ID ET S + ++ + H Sbjct: 356 VCIDTETTSIDPML----------AQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQL 405 Query: 51 --PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108 + ++ LE+ V + ++ V + + T++ + Sbjct: 406 SREAVLARMRLWLEDETRGKVGQHLKYDAHVFANH-GIALRGIT-HDTMLQSYVLASHRN 463 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 A ++ K E A EY D +T Sbjct: 464 HGMDALAERVLHLKTIT----------YEEVCGKGAAQIGFDEVALDRATEYAAEDADIT 513 Query: 169 REIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + + L P E + Q + G VD + + Sbjct: 514 LRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERNGVLVDAERLARQSAELGQRLLA 573 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273 L+QE +L + +++ F + L + T +T + VL + P Sbjct: 574 LEQEAYALAGQP-FNLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAEDYPLP 632 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + + R ++ + L + +N T + TGR + QN+P + Sbjct: 633 KLLLDYR-GLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRLASTDPNLQNIPVRT 691 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A G +V AD + IE R++A ++ Sbjct: 692 EEGRR-------------------------IREAFVAPAGSVIVSADYSQIELRIMAHLS 726 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G+ ++AF G+D++ T A F V P +VT +QR KV+ L Y A Sbjct: 727 GDDGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSA-----FGL 781 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + L + A + + + + ++ E + G Sbjct: 782 ASNLGIGRDAAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLP-----DI 836 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + +A G A K + + + + Sbjct: 837 NGGNGPRRQAAERAAINAPMQGTAADLIKLSMLAVQDWLEGS---------------PNA 881 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + + + ++Q VHDE+V Sbjct: 882 DKPGTPMRSRL----------------VMQ------------------------VHDELV 901 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P + L LM S +PL AE + Sbjct: 902 LEVPQDELARVRERLPELMCGVAS--LSVPLVAEVGVGSNW 940 >gi|66043540|ref|YP_233381.1| DNA polymerase I [Pseudomonas syringae pv. syringae B728a] gi|63254247|gb|AAY35343.1| DNA polymerase A [Pseudomonas syringae pv. syringae B728a] Length = 921 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 103/689 (14%), Positives = 195/689 (28%), Gaps = 158/689 (22%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKIKVGQHAK 406 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +D+ R T++ + + + + K Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G Y + +T + + + Sbjct: 457 YLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 516 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VL+ + +V S+ + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ + A TGR S QN+P + Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + G++ A + Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ V + Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLNYMERTRAQAAE- 804 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR L D+ + + R Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 836 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ + M+ ++L VHDE+V E + Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQIS 890 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ A +PL E + Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|152994321|ref|YP_001339156.1| DNA polymerase I [Marinomonas sp. MWYL1] gi|150835245|gb|ABR69221.1| DNA polymerase I [Marinomonas sp. MWYL1] Length = 916 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 103/700 (14%), Positives = 198/700 (28%), Gaps = 158/700 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------M 53 + D ET S + ++ +F + HD + Sbjct: 341 VAFDTETTSLNYMA----------AELVGLSFSVEAGEAAYVPVAHDYEGAPEQLDRDWV 390 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + LK LE+ V + ++ VL + + + T++ + S+ Sbjct: 391 LEQLKPWLEDDSKAKVGQHLKYDANVLNNYQ-ITLRGIAY-DTMLESYVYNSVSS----- 443 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + K L E + K ++ + Y D +T + + Sbjct: 444 ---RHDMNTLAS-KFLGHTCVSFEDIAGKGAKQKTFNQIDLEVAAFYAAEDADITLRLHQ 499 Query: 174 RLEPLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + P EL + + G +D L H + + + +L+ + Sbjct: 500 AIWPKIETTPELVSIFKDIECPLIPVLAKMEQTGALIDPELLHAQSSEIAAKLQELEIKA 559 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + ++L+ LF + GL + T +T + +L + + Sbjct: 560 HEEAG-ESFNLSSPKQLQVILFEKQGLPVIKKTPKGQPSTAEPILQELAQDYELPRLIME 618 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R S+ + L E + GR+ + + TGR S QN+P S Sbjct: 619 HR-SLSKLKSTYTDKLPEMIQKTGRIHTSYHQAI-TATGRLSSTDPNLQNIPIRSAEGRR 676 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA +G KLV AD + +E R++A ++ + Sbjct: 677 -------------------------IRQAFIAPKGYKLVAADYSQVELRIMAHLSQDSGL 711 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF D++ T A F V+ +VT +QR K + L Y A L Sbjct: 712 LDAFTKDADVHKATAAEVFEVSLDEVTTEQRRRAKAINFGLIYGMSA-----FGLAKQLG 766 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + E + + + +E E + G R + Sbjct: 767 IGRPEAGKYIKRYFERYPGVQQYMENTREGAKEKGYVETIYGR---------RLYLPDIK 817 Query: 519 E----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + G A KR + + Sbjct: 818 AKNAMMRQAAERTAINAPMQGSAADIIKRAMIKMHDWL---------------------- 855 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 Q +++ VHDE++ Sbjct: 856 ----------------------------QGT-------------DLDVKMIMQVHDELIF 874 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + D A + +M ++ +PL E + Sbjct: 875 EVAEKDLEAAQKKIVDIMQNSSK--IDVPLLVEAGVGDNW 912 >gi|330957163|gb|EGH57423.1| DNA polymerase I [Pseudomonas syringae pv. maculicola str. ES4326] Length = 921 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 103/689 (14%), Positives = 196/689 (28%), Gaps = 158/689 (22%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDSVLKTLKPLLEDPGKIKVGQHAK 406 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +D+ R T++ + + + + K Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G Y + +T + + E Sbjct: 457 YLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VL+ + +V S+ + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ + A TGR S QN+P + Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT+D R K + G++ A + Sbjct: 730 TAAEVFGVELEGVTQDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ V + + Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE- 804 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR L D+ + + R Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNP---SLRKGAERMA 836 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ + M+ ++L VHDE+V E + Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLDASGLDARVILQVHDELVLEVREDLVDQIS 890 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ A +PL E + Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGIGNNW 917 >gi|195940271|ref|ZP_03085653.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4024] Length = 881 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 92/659 (13%), Positives = 187/659 (28%), Gaps = 164/659 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA E +V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F + VT +QR K + G Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + +++ Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + GR L D+ ++ Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629 + +Q + DI+ M+ +++ VH Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVH 881 >gi|332188178|ref|ZP_08389907.1| DNA polymerase I family protein [Sphingomonas sp. S17] gi|332011785|gb|EGI53861.1| DNA polymerase I family protein [Sphingomonas sp. S17] Length = 921 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 108/710 (15%), Positives = 189/710 (26%), Gaps = 170/710 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------ 51 + ID ET S A ++ + + H Sbjct: 340 IAIDTETSSTD----------ATQAELVGVSLCLSPNKACYIPLGHGGTDLLSEVPVQIP 389 Query: 52 --VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109 + +K E+ V + N F+ VL I I T+V++ Sbjct: 390 VAEALERIKALCEDPSVLKIGQNLKFDMIVL---GERGISIAPHDDTIVMSFDLDAGL-- 444 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 ++ L + + H + Y D VT Sbjct: 445 ------HGHGMDELAATH-LSHTCLAFKEVVGTGKKQLGFHEVDLKTATRYAAEDADVTL 497 Query: 170 EIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 ++KR + EQ L + + RG VD L+ + L+ Sbjct: 498 RLWKRFKARLPMEQATRVYEMVDRPLVPVIANMERRGIKVDRERLSQLSTEFAGQIAGLE 557 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK-KLTPQAI 274 E+ +L + ++L LF GL ++ T L + + Sbjct: 558 GEIHTLAGTP-FTIGSPKQLGEILFDRLGLKGGRKGKSGVYSTDVTELERLARDGGEEIV 616 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + S+ + L +N T L ++TGR S QN+P + Sbjct: 617 RKILEWRQLSKLKSTYTDALQAQINPKTGRVHTSYSLTGAQTGRLSSTEPNLQNIPIRTE 676 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA +G L+ AD + IE R+ A MA Sbjct: 677 VGR-------------------------QLREAFIAEDGHVLIAADYSQIELRLAAHMAD 711 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 AF G+D++ T F +V +D R K + A+ Y + Sbjct: 712 VPALRDAFANGDDIHSLTAKELFG----EVNRDTRGRAKTINFAILY-----GISRWGLA 762 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L+ + + + ++ Sbjct: 763 GRLD---------------------------------------VSADEAQAMIDRYFERF 783 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 ++ E + + GR + + Sbjct: 784 PGINRYIAETLSSVRE--------------------------KGFTETLFGRKTHFPRIA 817 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLT 627 + R +Q S DI+ M+ A ++L Sbjct: 818 SRNQGERQ---GAERAAINAP------IQGTSADIIKRAMVRMEPALAAAGLGHVRMLLQ 868 Query: 628 VHDEIVCETPDTDEFNASM-LYHLMTSNPSWA--KGLPLKAEGYESKRYR 674 VHDE+V E P+ D A + +M A +PL E K + Sbjct: 869 VHDELVFEAPEADAEAAGAVIREVMAGAAEPAVKLSVPLGVEIGVGKNWG 918 >gi|330938832|gb|EGH42351.1| DNA polymerase I [Pseudomonas syringae pv. pisi str. 1704B] Length = 832 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 104/689 (15%), Positives = 196/689 (28%), Gaps = 158/689 (22%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 258 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 317 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +D+ R T++ + + + + K Sbjct: 318 FAINLLANCAIDGDQAQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 367 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G Y + +T + + + Sbjct: 368 YLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 427 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 428 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 486 Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VL+ + +V S+ + Sbjct: 487 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 546 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ + A TGR S QN+P + Sbjct: 547 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 592 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 593 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 640 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + G++ A + Sbjct: 641 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 681 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ V + Sbjct: 682 -------------------------GVDRKQSQAYVDRYFARYPGVLNYMERTRAQAAE- 715 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR L D+ + + R Sbjct: 716 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 747 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ + M+ ++L VHDE+V E + Sbjct: 748 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQVS 801 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ A +PL E + Sbjct: 802 EQIRPHMSGAAELA--VPLLVEVGVGNNW 828 >gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21] gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21] Length = 928 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 97/703 (13%), Positives = 193/703 (27%), Gaps = 164/703 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 + D ET G ++ +F + D + Q Sbjct: 355 KSFCFDTETT--------GTDANCC--ELVGLSFSVEKGQAWYVPASADQKEAHALVQQF 404 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLP--SALKAVGE 114 K EN + + N F+ VL D+ + T++ + + E Sbjct: 405 KPVFENPAIGKIGQNLKFDILVLSWY---DVKVAGELFDTMLAHYLIDPETRHGMDVLSE 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 LI + +Y D +T ++ + Sbjct: 462 --NYLGYTPVSITTLIG---------PKGKGQLNMRDVDPKTVSDYAAEDADITLQLKEI 510 Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 EP+ E L + + G +DV + + E L+ + Sbjct: 511 FEPMLIKVEADKLAHEVEFPLVPVLVDMERVGVRIDVKALSDFSLAIQNEVQILEARIYE 570 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNN 279 + ++L LF + L + T+T T + VL + + + Sbjct: 571 KAGVP-FNIASPKQLGEVLFDKLQLDPKAKKTKTGQYQTGEDVLMALANKSDIVQDILEY 629 Query: 280 RMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R + ++ L + +N GR+ + A+ TGR S QN+P + E Sbjct: 630 RQ-LQKLRSTYVDALPQLINTKTGRVHTSYNQAVAA-TGRLSSNNPNLQNIPIRTERGRE 687 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQW 397 VR IA + ++ AD + IE R++A ++ + Sbjct: 688 -------------------------VRKAFIARDDEHVILSADYSQIELRLIAEISKDAN 722 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF G D++ T A+ + V +VT +QR K G Sbjct: 723 MLDAFAKGLDIHTATAAKVYGVGLEEVTGNQRRNAKA--------------VNFGIIYGQ 768 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + + + + ++ + Sbjct: 769 S------------------------------AFGLSQSLGIPRREAADMIEQYFIQYPGI 798 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + N ++ + + R RD+ + Sbjct: 799 RDYMNNTIAFAKE--------------------------HGYVETLLKRRRYLRDINSAN 832 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631 + T R +Q + D++ M++ + + VHDE Sbjct: 833 A---TVRGFAERNAINAP------IQGSAADLIKIAMIHIHQDIQQANLKGKMTMQVHDE 883 Query: 632 IVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 +V + P + + M +P+ E E + + Sbjct: 884 LVFDVPRNEVAAFKEIIEARMKGALK--TEVPIVVEIGEGQNW 924 >gi|330965636|gb|EGH65896.1| DNA polymerase I [Pseudomonas syringae pv. actinidiae str. M302091] Length = 921 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 102/689 (14%), Positives = 195/689 (28%), Gaps = 158/689 (22%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ + V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +++ R T++ + + + + K Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G Y + +T + + E Sbjct: 457 YLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPSLQP 516 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VL+ + +V S+ + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ + A TGR S QN+P + Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + F V VT D R K + G++ A + Sbjct: 730 TASEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ V + + Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRTQAAE- 804 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR L D+ L R Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNPSLRN---GAQRMA 836 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ + M+ ++L VHDE+V E + Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQIS 890 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ A +PL E + Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|330874574|gb|EGH08723.1| DNA polymerase I [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 921 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 102/689 (14%), Positives = 195/689 (28%), Gaps = 158/689 (22%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ + V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +++ R T++ + + + + K Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G Y + +T + + E Sbjct: 457 YLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPSLQP 516 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VL+ + +V S+ + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ + A TGR S QN+P + Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + F V VT D R K + G++ A + Sbjct: 730 TASEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ V + + Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRTQAAE- 804 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR L D+ L R Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNPSLRN---GAQRMA 836 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ + M+ ++L VHDE+V E + Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQIS 890 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ A +PL E + Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|330952067|gb|EGH52327.1| DNA polymerase I [Pseudomonas syringae Cit 7] Length = 921 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 103/689 (14%), Positives = 195/689 (28%), Gaps = 158/689 (22%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ + V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPEKIKVGQHAK 406 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +D+ R T++ + A + + K Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVR-FDTILESYVLD--------STAPRHDRDSLVA-K 456 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G Y + +T + + + Sbjct: 457 YLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 516 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VL+ + +V S+ + Sbjct: 576 KQLGVILYEKLGMPVLSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ + A TGR S QN+P + Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + G++ A + Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ V + Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLNYMERTRAQAAE- 804 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR L D+ + + R Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 836 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ + M+ ++L VHDE+V E + Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQIS 890 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ A +PL E + Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|148553374|ref|YP_001260956.1| DNA polymerase I [Sphingomonas wittichii RW1] gi|148498564|gb|ABQ66818.1| DNA polymerase I [Sphingomonas wittichii RW1] Length = 941 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 95/712 (13%), Positives = 194/712 (27%), Gaps = 175/712 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 + +D ET + + ++ + H Sbjct: 361 IAVDTETDNVDPVR----------ANLVGVSLSTAPGKACYIPLAHIGDGLLSETPRQIA 410 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--- 106 LK LE + + N ++ VL + + + T++L+ Sbjct: 411 MDAALAKLKPLLEAAHILKIGQNIKYDMVVLAKY---GVDVAPYDDTMLLSYDLDAGLGG 467 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + + + L + +T + + EY D Sbjct: 468 HGMDELAQRH------------LDHGCIEFKTVCGTGKSQISFDKVTLDVATEYAAEDAD 515 Query: 167 VTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 VT +++ L+ + ++ L + + G VD L+ E T Sbjct: 516 VTLRLWQLLKGRLAPEAATRVYELIDRPLVPVLTGMERAGIKVDREELARLSAEFSGEAT 575 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQ 272 +L+ + + + ++L LF + GL + +T L Sbjct: 576 RLEAAIHAEAGTP-FTVGSPKQLGDILFDKMGLKGGRKGKTGVYSTDVTELERLAGDGVA 634 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 ++ + + ++ + L + +N T + ++TGR S QN+P Sbjct: 635 IARLVLDWRQLTKLRSTYTDALQQQINPATGRVHTCFSMAVAQTGRLSSTDPNLQNIPIR 694 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 S +R +A GK ++ AD + IE R+ A M Sbjct: 695 SDHGRR-------------------------IRDAFVAEPGKLILSADYSQIELRLAAHM 729 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 A AF G+D++ T F +V +D RA K + ++ Sbjct: 730 ADVPALKDAFARGDDIHALTAQEVFG----EVNRDTRARAKTINFSIL------------ 773 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ A + + + Sbjct: 774 --YGIS------------------------------AWGLAGRLEVSREEAQGMIDRYFS 801 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + ++ + GR Sbjct: 802 RFPGINHYIAATLGQVRD--------------------------QGYVSTLFGRKTHLPW 835 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIV 625 + + + + R+ +Q S DI+ M+ A ++ Sbjct: 836 IRSAKQGERQS---AERQAINAP------IQGTSADIIKRAMVRMNPALAAAGLGDVKML 886 Query: 626 LTVHDEIVCE-TPDTDEFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRYR 674 L VHDE+V E P+ E ++++ +M P +PL E + Sbjct: 887 LQVHDELVFELAPEQVEPASAVIRAVMAGAAEPIVRLSVPLGVEIGTGPSWG 938 >gi|332283708|ref|YP_004415619.1| DNA polymerase I [Pusillimonas sp. T7-7] gi|330427661|gb|AEC18995.1| DNA polymerase I [Pusillimonas sp. T7-7] Length = 860 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 104/705 (14%), Positives = 192/705 (27%), Gaps = 166/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51 + +D ET S + ++ + + H Sbjct: 285 DLVALDTETTSLDPM----------QARLVGLSMSVEAGVACYIPVAHRGPDHAPQLPKQ 334 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--AL 109 + L+ LE++ + HN+ ++ VL + + T++ A + Sbjct: 335 EVLDRLRPWLEDSKAHKLLHNAKYDTHVLMN-EGVALAGVA-EDTMLQAYVLESHKRVNM 392 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + E L E + Y D T Sbjct: 393 QELAER------------WLGRIGTTYEDLCGKGAKQIGFDEIDVDKASHYACEDADFTL 440 Query: 170 EIFKRLEPLS--SKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 ++ + L P E Y I G +D L + + + + + Sbjct: 441 QLHQVLRPKVLADPGLENIYQLEVQASATLAIIERNGVAIDGKLLAAQSHELGQKLLEFE 500 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQ 275 + L + ++L LF L +T + VL+ P Sbjct: 501 AKAYELAGQP-FNLNSPKQLGEILFQRMQLPIVRKTPSGAPSTDEDVLTKLAHDYPLPAL 559 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R ++ + L + +N T A TGR + QN+P + Sbjct: 560 LLEYR-GLAKLKSTYTDKLPKMINPRTGRVHTRYAQAAVITGRLASSDPNLQNIPVRTPE 618 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 VR+ +AS G ++V AD + IE RV+A ++ + Sbjct: 619 GRR-------------------------VRAAFVAS-GGQIVSADYSQIELRVMAHVSDD 652 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + +AFE G+D++ T A F A A+V+ +QR K + Sbjct: 653 ENLRQAFERGDDIHQATAAEVFGAAQAEVSAEQRRAAKAIN--------------FGLIY 698 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A A + ++ Sbjct: 699 GMGEFGL------------------------------ASNLGITRDAARAYIDRYFARYP 728 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V+ + + + + GR L D+ Sbjct: 729 GVAAYMEQTKRMANE--------------------------LGYVETVFGRRLWLPDL-- 760 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYD--IVLTVH 629 R R +Q + D++ M+ G +V+ VH Sbjct: 761 -RGAKGPRRAAAERAAINAP------MQGTAADLIKMAMVAVQDWLEAEGLKTLMVMQVH 813 Query: 630 DEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E P + L LM + +PL AE + Sbjct: 814 DELVFEVPADEVDIIKKHLPALMCNVAQ--LSVPLVAEVGVGPNW 856 >gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305] gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305] Length = 950 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 104/722 (14%), Positives = 207/722 (28%), Gaps = 177/722 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------- 50 + +D ET S + ++ + H Sbjct: 352 KCIALDTETDSLDSMR----------ANLVGISLALASGEACYIPLAHKTLVTTSAGQGD 401 Query: 51 ------PVM--------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 + LK LEN ++ + N ++ TV +++ Sbjct: 402 LFSSEMETVGYELAKNQLNLTACLAQLKPILENPEIKKIGQNIKYDLTVFANH-GINVQG 460 Query: 91 HRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 T++ + + + + + G + I E Sbjct: 461 VA-FDTMLESYTLNSTGRHNMDDLSDRY--------LGHKTIEF----EAIAGKGKNQLT 507 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGY 197 + EY D VT ++ + L E L + I G Sbjct: 508 FDQIEISTAAEYAAEDADVTMKLHQVLWSQLVQEPTLVKLFDEIELPLVSVLSRIERNGV 567 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE- 256 +D A + ++ +L+QE+ S V + ++L+ LF + GL + T Sbjct: 568 LIDPAKLKQQSSEIERRLAELEQEVHSEAGS-VFNLASTKQLQEILFEKLGLPILKKTPK 626 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLG 312 +T + VL + + ++ S+ + L +N GR+ + Sbjct: 627 GAASTNEEVLEELAMMGHRVPKLLIEHRGLSKLKSTYTDKLPLMINAKTGRVHTSYHQAV 686 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P + +R IA + Sbjct: 687 -TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAFIARK 720 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G K+V AD + IE R++A +A ++ LKAF G+D++ +T + F V +VT +QR Sbjct: 721 GYKIVAADYSQIELRIMAHLANDEGMLKAFAEGKDIHRSTASEIFGVPLDEVTGEQRRNA 780 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + L Y + + L ++ + + + F ++ E Sbjct: 781 KAINFGLIYGMS-----EFGLSNQLGISRADAKQYMEAYFNRYPNVLQFMTDIKAKAAEK 835 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + +G R + Sbjct: 836 GYVETLLGR---------RLYLPEIKS--------------------------------- 853 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 + + + + T + + G + I+Q Sbjct: 854 ----------SNAMRRKAAERVAINAPMQGTAADIIKIAMIG---IDRIIQ--------- 891 Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESK 671 +++ VHDE+V E + ++++ M +PL AE Sbjct: 892 -----HSDEIKMIMQVHDELVFEVREDKVEHYSALIKAEMEKAIQ--LSVPLIAEVGIGD 944 Query: 672 RY 673 + Sbjct: 945 NW 946 >gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202] gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202] Length = 950 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 105/722 (14%), Positives = 210/722 (29%), Gaps = 177/722 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------- 50 + +D ET S ++ ++ + + VH Sbjct: 352 KCIALDTETDSLDSMS----------ANLVGVSLALANGEACYIPLVHKTLVTTSAEQGD 401 Query: 51 ------PVM--------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 + LK LEN ++ + N ++ TV +++ Sbjct: 402 LFANEMETVGYELAKNQLNLTVCLAQLKPILENPEIKKIGQNIKYDLTVFANH-GINVQG 460 Query: 91 HRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 T++ + + + + E G + I E Sbjct: 461 VA-FDTMLESYTLNSTGRHNMDDLAERY--------LGHKTIEF----EAIAGKGKNQLT 507 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGY 197 + EY D VT ++ + L E L + I G Sbjct: 508 FDQIEISTAAEYAAEDADVTMKLHQVLWSQLAQEPALVKLFDEIELPLVSVLSRIERNGV 567 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE- 256 +D A + ++ +L+QE+ S V + ++L+ LF + GL + T Sbjct: 568 LIDPAKLKQQSSEIERRLAELEQEVHSEAGS-VFNLASTKQLQEILFEKLGLPILKKTPK 626 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLG 312 +T + VL + + ++ S+ + L +N GR+ + Sbjct: 627 GAASTNEEVLEELAMMGHRVPKLLIEHRGLSKLKSTYTDKLPLMINAKTGRVHTSYHQAV 686 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P + +R IA + Sbjct: 687 -TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAFIARK 720 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G K+V AD + IE R++A +A ++ LKAF G+D++ +T + F V +VT +QR Sbjct: 721 GYKIVAADYSQIELRIMAHLANDKGMLKAFAEGKDIHRSTASEIFGVPLDEVTGEQRRNA 780 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + L Y + + L ++ + + + F ++ E Sbjct: 781 KAINFGLIYGMS-----EFGLSNQLGISRADAKQYMEAYFNRYPNVLQFMTDIKAKAAEK 835 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + +G R + Sbjct: 836 GYVETLLGR---------RLYLPEIKS--------------------------------- 853 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 + + + + T + + G + ++Q Sbjct: 854 ----------SNAMRRKAAERVAINAPMQGTAADIIKIAMIG---IDRVIQ--------- 891 Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESK 671 +++ VHDE+V E + ++++ M +PL AE Sbjct: 892 -----HSDEIKMIMQVHDELVFEVKEDKVEHYSAVIKAEMEKAIQ--LNVPLIAEVGVGD 944 Query: 672 RY 673 + Sbjct: 945 NW 946 >gi|159028763|emb|CAO89934.1| polA [Microcystis aeruginosa PCC 7806] Length = 956 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 105/701 (14%), Positives = 208/701 (29%), Gaps = 151/701 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD-------PVMPQVL 57 D ET ++ + + H ++ + L Sbjct: 371 DTETTDLNP----------RVAKLVGIGCCWGKELNAMAYIPIGHQNGDNLNLEIVLEKL 420 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115 + L + + V N+ F+ V + + T+V + L+ + + Sbjct: 421 RPILASDNYPKVFQNAKFDIDVF-YHQGITVK-GLVFDTMVASYVLHPELTHNLEDLCDR 478 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L K L K YC D T + ++L Sbjct: 479 Y-LDGITSLSYKSLGIPGGK------------TIADLDITTTANYCGLDAYATYLLREKL 525 Query: 176 EPLSSKEQELWY-----------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + +K L+ + + + G +++ L+Q ++ + ++++ Sbjct: 526 QAELTKIPSLYQLFSEVESPLVMVLWQMENYGIKININYLKNLSQQLERDLADIEKKAYE 585 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNN 279 + ++L LF L+ + T+ +T Q VL + P + + Sbjct: 586 SIG-ETFNLGSPKQLSEILFDRLALNRKKSRKTKTGYSTDQSVLEKLQGDHPLIDYILEH 644 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ ++ L + T + TGR S QN+P S Sbjct: 645 R-TLSKLKSTYVDALPKLAEPKTARVHTDFNQTITSTGRLSSSNPNLQNIPVRSE----- 698 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 S +R I +G LV AD + IE R+LA ++ E L Sbjct: 699 --------------------FSRRIRQAFIPEDGYLLVSADYSQIELRILAHLSQEPVLL 738 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +A+ + +D++ T F ++T ++R++GK + + Y GA+ F + + L Sbjct: 739 EAYRSNQDVHKVTAQLLF--DKGEITPEERSLGKTINFGVIYGMGAQKFARESK-----L 791 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ-KHSRVS 518 + + + ++ + +G + + + + Sbjct: 792 TVEQGRKFIEKYHQRYAQVFQYLENSKKQAIAQGYVETILGR------RRYFNFDNPLLK 845 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 L R L D+ + Sbjct: 846 RL---------------------------------------------RGLSLHDIDLDSL 860 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634 LN QL R +Q S DI+ M+ + ++L VHDE+V Sbjct: 861 KLNNEEAQLLRSAANAP------IQGSSADIIKVAMVKLAEVLQNYRARLLLQVHDELVL 914 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E P + + + M S +PL E + Sbjct: 915 EVPREEWPSLESKIKTTMEEAVS--LTVPLLVEIKAGDNWM 953 >gi|289627990|ref|ZP_06460944.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646458|ref|ZP_06477801.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 2250] gi|330866583|gb|EGH01292.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 921 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 104/689 (15%), Positives = 196/689 (28%), Gaps = 158/689 (22%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ T V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPGKTKVGQHAK 406 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +D+ R T++ + + + + K Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G Y + +T + + E Sbjct: 457 YLTHTPINFQEIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VL+ + +V S+ + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ + A TGR S QN+P + Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + G++ A + Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ V + + Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE- 804 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR L D+ + + R Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 836 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ + M+ ++L VHDE+V E + Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQIS 890 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ A +PL E + Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|255534870|ref|YP_003095241.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10] gi|255341066|gb|ACU07179.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10] Length = 949 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 103/700 (14%), Positives = 211/700 (30%), Gaps = 159/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 + D ET + ++ D ++ +F + D ++ Sbjct: 377 KAVAFDTETTTLNEM----------DAELVGLSFSYRKGLAYYIPLSEDRSEAIQTLEIF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEA 115 +E E DV+ VAHN F+ +L+ + T++ + E Sbjct: 427 REFFEKEDVSKVAHNLKFDYKILQQY-GFSLK-GLLFDTMIAHYLLNPDGKHVIDYLSEI 484 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + K + LI + Y D +T ++++ Sbjct: 485 Y--LNYKPVALESLIGK---------KGKNQLTFRSLTVEEQTNYAAEDADITWQLYEVF 533 Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P KE L + + G +D + ++ + L+ ++ L Sbjct: 534 APQLKKENLEDLFYKVEMPLLRVLAKMELEGVALDEKWLAQESIDLENDLRGLEAKIFEL 593 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +L LF + L + T+T T + VL + R Sbjct: 594 ADV-EFNVNSPRQLGEILFEKLKLDPKAKKTKTGQYATSEDVLQKLSAKHDIIKYILEYR 652 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L ++ D T + TGR + QN+P + Sbjct: 653 -TYQKLKSTYVDALPLQIDKDDNRVHTSFSQTTAATGRLASVNPNLQNIPIRTLRG---- 707 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R +A+EGKK++ AD + IE R++A ++ E+ + Sbjct: 708 ---------------------QQIRGAFVAAEGKKIISADYSQIELRLIAEISNEENMIL 746 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ GED++V+T AR F++ +VTK QR K + G Sbjct: 747 AFQNGEDIHVSTAARLFDIPLEEVTKTQRGQAKTVN--------------FGIIYG---- 788 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + A + T +++ +++ + + R+ + Sbjct: 789 --------------------------QGAFALAEQTGLSRTEAKQMIESYFENYPRLKKY 822 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 E Q ++ + R +D+ + + Sbjct: 823 MGEQVQKAQE--------------------------LGYVETILNRKRHLKDINSANFVV 856 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 + +Q + D++ M+ + ++L VHDE++ Sbjct: 857 KAHAERN---------AVNAPIQGSAADVIKLAMIKIDQKLSELNLKTKMLLQVHDELLF 907 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P + ++ M S +PL E + Sbjct: 908 EAPQEEVEMVMKLIKTEMESAFE--TKVPLLVEVGVGDNW 945 >gi|330986810|gb|EGH84913.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M301315] Length = 921 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 105/689 (15%), Positives = 197/689 (28%), Gaps = 158/689 (22%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +D+ R T++ + + + + K Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G Y + +T + + E Sbjct: 457 YLTHTPINFQEIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VL+ + +V S+ + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ + A TGR S QN+P + Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + G++ A + Sbjct: 730 TAAEVFGVELDNVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ V + + Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE- 804 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR L D+ + + R Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 836 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ + M+ ++L VHDE+V E + Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQIS 890 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ A +PL E + Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|320322196|gb|EFW78292.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. B076] gi|320331847|gb|EFW87785.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4] Length = 921 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 105/689 (15%), Positives = 198/689 (28%), Gaps = 158/689 (22%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +D+ R T++ + + + + K Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G+Y + +T + + E Sbjct: 457 YLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQP 516 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VL+ + +V S+ + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ + A TGR S QN+P + Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + G++ A + Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ V + + Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE- 804 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR L D+ + + R Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 836 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ + M+ ++L VHDE+V E + Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQIS 890 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ A +PL E + Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|298485205|ref|ZP_07003298.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160193|gb|EFI01221.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 921 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 104/686 (15%), Positives = 195/686 (28%), Gaps = 158/686 (23%) Query: 28 VCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSYFER 77 ++ +F H H + + LK LE+ D T V ++ F Sbjct: 350 AQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAKFAI 409 Query: 78 TVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 +L C +D+ R T++ + + + + K L Sbjct: 410 NLLANCALDGDQTQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-KYLT 459 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------- 179 + + + A G Y + +T + + E Sbjct: 460 HTPINFQEIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLN 519 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + I +G VD L + + + T L++E ++ + ++L Sbjct: 520 DIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSPKQL 578 Query: 240 KTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 L+ + G+ + T +T + VL+ + +V S+ + L Sbjct: 579 GVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLP 638 Query: 296 EAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 E +N GR+ + A TGR S QN+P + Sbjct: 639 EQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR---------------- 681 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ T A Sbjct: 682 ---------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAA 732 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 F V VT D R K + G++ A + Sbjct: 733 EVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI-------- 770 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + + ++ V + + Sbjct: 771 ----------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE---- 804 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 + GR L D+ + + R Sbjct: 805 ----------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMAINA 839 Query: 595 GKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA-SML 647 +Q + DI+ + M+ ++L VHDE+V E + + Sbjct: 840 P------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQI 893 Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRY 673 M+ A +PL E + Sbjct: 894 RPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|71736059|ref|YP_272564.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556612|gb|AAZ35823.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A] Length = 921 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 105/689 (15%), Positives = 198/689 (28%), Gaps = 158/689 (22%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +D+ R T++ + + + + K Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G+Y + +T + + E Sbjct: 457 YLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQP 516 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VL+ + +V S+ + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ + A TGR S QN+P + Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + G++ A + Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ V + + Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE- 804 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR L D+ + + R Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 836 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ + M+ ++L VHDE+V E + Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQIS 890 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ A +PL E + Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|300087225|ref|YP_003757747.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526958|gb|ADJ25426.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 915 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 104/703 (14%), Positives = 199/703 (28%), Gaps = 168/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---------DPVMPQ 55 +D ET L+ ++ + H + + Sbjct: 345 ALDTETTGLDALS----------ADLVGLSLAPAAGEGYYLPVGHSGVEGRQWTTDELKR 394 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNG-LPSALKAVG 113 L L + + +AHN+ ++ +L + + T++ A G +LK + Sbjct: 395 YLGPVLADVGIGKIAHNAKYDLHILA---GAGLLVAGLDFDTMLAAHLLGESSLSLKGLA 451 Query: 114 -EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 L + M LI K R +Y D +T ++ Sbjct: 452 FNRLGIE---MTPITALI----------GEGRHQKCISTCGLRETADYACADADMTLRLY 498 Query: 173 KRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L P KE L + + G VDV + ++ + + T+++ + Sbjct: 499 QLLLPELEKENQSRLFDEVEMPLVPVIMDMEAAGIAVDVTILSAMSARLGRQLTEIEAAI 558 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNN 279 + +L LF E L + T + T VL K + Sbjct: 559 YEQ-ANRPFNIASPRQLGEVLFEELKLPVGRKTRSGYRTDAAVLEGLKDEHEIVRLILEY 617 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ ++ L +++ DGRL + + TGR S QN+P + E Sbjct: 618 R-TLAKLKSTYVDILPAMVSARDGRLHTSFNQAR-TATGRLSSSDPNLQNIPVRGQYGRE 675 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G L+ AD + I+ R LA ++G+ Sbjct: 676 -------------------------IRQAFVAPPGHFLLAADYSQIDLRALAHLSGDSAL 710 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF ED++ T + + ++T + R K + G++ Sbjct: 711 IAAFNAEEDIHTATAMSLYGLPRDEITPEMRRFAKTVN--------------FGVIYGMS 756 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + R + + +++ V Sbjct: 757 GYGLEQATEM------------------------------SREESTRFIQTYFERYPGVR 786 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 N + + GR D+ Sbjct: 787 AYLNLTKEQARS--------------------------RGYVETILGRRRYIPDINAAN- 819 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632 R VQ S DI+ M+ + ++L VHDE+ Sbjct: 820 --RQVREAAERMAINMP------VQGTSADIIKVAMLEVRREMDSQGLESRLLLQVHDEL 871 Query: 633 VCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674 + E P + S L M++ +PL+ + + Sbjct: 872 IFEVPQAELMFMSELASRRMSAAVE--LKVPLRVDIKYGANWG 912 >gi|257481814|ref|ZP_05635855.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 921 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 105/689 (15%), Positives = 198/689 (28%), Gaps = 158/689 (22%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 347 AQRAQLVGLSFATQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +D+ R T++ + + + + K Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G+Y + +T + + E Sbjct: 457 YLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQP 516 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VL+ + +V S+ + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ + A TGR S QN+P + Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + G++ A + Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ V + + Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE- 804 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR L D+ + + R Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 836 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ + M+ ++L VHDE+V E + Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQIS 890 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ A +PL E + Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|331007743|ref|ZP_08330869.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989] gi|330418451|gb|EGG92991.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989] Length = 601 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 210/660 (31%), Positives = 310/660 (46%), Gaps = 76/660 (11%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTD-VTIVAHNSYFERTVLKACFNL-DIPI 90 A+ D LW + +P+ + N TI A NS+FE + + PI Sbjct: 1 MAYAIGDEDPILW--LPGDDLPEFV----TNPSEFTIYAWNSFFEWCIWHHVQEWSNAPI 54 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKL--SSQKMEEGKELIARFCKGETHECLYDRNKP 148 W T LA +P AL A +AL L QK + GK LI R K + + Sbjct: 55 FLWTDTAALAAVLAMPRALGACAKALGLPQDQQKDKRGKYLIQRLSKPNRGK------RI 108 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + F EYC+ DV V R + RL PLS++E+++W LDQTIN RG +D Sbjct: 109 QDADLLEEFYEYCRQDVVVERAVLARLRPLSTQERKVWELDQTINIRGVFIDNQSVENAL 168 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268 I+D KL+QE+ LT +++ +++ ++ E G L + + VL + Sbjct: 169 LIIDQVTEKLNQEVAQLTASHLTNVSQRQRVMNYISDELGYSLIKFDKAYLETVLED-ET 227 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 L P A ++ R + +++ K L + + D R G L + GA+ TGRWSG F PQN Sbjct: 228 LPPIARRLIEIRQQLGKTSTAKYAALKKIVTEDNRAHGLLMYHGAT-TGRWSGKHFQPQN 286 Query: 329 LPRPSRSHEELDQIITHL---PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 LPRPS + + DP++ +S +R + A EGK+L+V D + IE Sbjct: 287 LPRPSFKDTDNCIRLFKHADSELLELIYDDPMEALSSSLRGMICAPEGKRLIVVDYSQIE 346 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 ARVL W+AG++ L G ++Y T ++ + V P +V ++QR IGKV LALGYQGGA Sbjct: 347 ARVLPWLAGQEDALTKIRQGVEIYKITASQIYGVPPEKVNEEQRFIGKVATLALGYQGGA 406 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 KAFQ MA G+ ++ + Sbjct: 407 KAFQGMAEVYGVEID---------------------------------------TDLADE 427 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 +K WR + ++ + W + +A K ++ + + N L LPSG Sbjct: 428 IKVDWRVANRKIVKFWWGVEKAALNA-----VTHPGKTFEIRAIKFRFTDNYLFCRLPSG 482 Query: 566 RSLVYRDVGNNRS----------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 R L Y + N+ TR+ R+ TYGGKL ENI QAV+RD++AE M+ Sbjct: 483 RLLAYYQPKTSIGKFDKEQVTFMGTNSLTRKWERQNTYGGKLVENITQAVARDLMAEAML 542 Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 AGY++VL+VHDE++ E + D + LM P WAKGLP+ +EG+E RYRK Sbjct: 543 RVENAGYEVVLSVHDELIAEA-NDDFGSVEEFEQLMCELPVWAKGLPVTSEGFECLRYRK 601 >gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 929 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 101/701 (14%), Positives = 202/701 (28%), Gaps = 160/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----L 57 + D ET S ++ + ++ A ++ H D + + L Sbjct: 356 KEICFDTETTSLNEM----------EAQIVGLALSYEIHKGYYILFPEDFSLAKQWFLLL 405 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K EN + + N ++ +L +++ + T++ + + EA Sbjct: 406 KPFFENESILKIGQNLKYDFKILANY-GIEVK-GEFFDTMIAHYLLNPDMRHNMDLLSEA 463 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + LI + L EY D VT ++ Sbjct: 464 Y--LGYSPISIETLIGK---------KGKGQLTMRAVPAELQKEYAVEDTDVTLQLKHVF 512 Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 PL K+Q L + + G VD L++ + + L++ + S Sbjct: 513 LPLLEKDQMLSLFRKVEAPLVEVLAQMEYEGIRVDTHFLAQLSKEIAADLIGLEKTIFSQ 572 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLTPQAIQVFNNR 280 + ++L LF + L + T + VLS V R Sbjct: 573 -AEESFNLSSPKQLGDILFEKLKLLSKPKKTKTGQYATSEEVLSELASKHEIVANVLEFR 631 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + + L +N T + TGR S QN+P + Sbjct: 632 -ALQKLQSTYIEALPREVNPHTGRIHTTFMQAVTATGRLSSNQPNLQNIPIRTPRG---- 686 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R + E L+ AD + IE R++A ++ E + Sbjct: 687 ---------------------SQIRKAFVPRNEDYTLLSADYSQIELRIIAALSEEDHMI 725 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G+D++ +T A+ F V VTK+QR+ K + + Sbjct: 726 EAFLEGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGII------------------- 766 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + + + + + Q + ++ Sbjct: 767 -------------------------YGVSAIGLSQQTSLSRSQSKELIDTYYQTYPKLKT 801 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + + GR DV + Sbjct: 802 YIEKQIFFARE--------------------------HGYVQTILGRRRYLPDVYSRNQV 835 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGY--DIVLTVHDEIV 633 + + +Q + DI+ M+ K G ++L VHDE++ Sbjct: 836 VRGAAERN---------AVNAPIQGSAADIIKIAMVRIAQRIQKEGLATRMLLQVHDELL 886 Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + P + A ++ M + + +PL E + Sbjct: 887 FDVPKKELEVAKALIREEMENA--YTLIVPLIVEIGTGNNW 925 >gi|330972146|gb|EGH72212.1| DNA polymerase I [Pseudomonas syringae pv. aceris str. M302273PT] Length = 822 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 103/689 (14%), Positives = 195/689 (28%), Gaps = 158/689 (22%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D V ++ Sbjct: 248 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKIKVGQHAK 307 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +D+ R T++ + + + + K Sbjct: 308 FAINLLANCAIDGDQAQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 357 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G Y + +T + + + Sbjct: 358 YLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 417 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 418 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 476 Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VL+ + +V S+ + Sbjct: 477 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 536 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ + A TGR S QN+P + Sbjct: 537 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 582 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 583 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 630 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + G++ A + Sbjct: 631 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 671 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ V + Sbjct: 672 -------------------------GVDRKQSQAYVDRYFARYPGVLNYMERTRAQAAE- 705 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR L D+ + + R Sbjct: 706 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 737 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ + M+ ++L VHDE+V E + Sbjct: 738 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQIS 791 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ A +PL E + Sbjct: 792 EQIRPHMSGAAELA--VPLLVEVGVGNNW 818 >gi|294013310|ref|YP_003546770.1| DNA polymerase I [Sphingobium japonicum UT26S] gi|292676640|dbj|BAI98158.1| DNA polymerase I [Sphingobium japonicum UT26S] Length = 928 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 105/709 (14%), Positives = 196/709 (27%), Gaps = 167/709 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------- 52 + +D ET D+ C C ++ + + H Sbjct: 346 VAVDTET----DMLDCVSCA------LVGVSLAVGPNAACYIPVGHGGKDMFAEKPDQLP 395 Query: 53 ---MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109 + LK LE+ V + N ++ TVL+ I I + T+V++ +L Sbjct: 396 LPLVLAKLKPLLEDDSVLKIGQNLKYDITVLRRH---GIEIAPYDDTIVMSFDLDAGQSL 452 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + L + EY D VT Sbjct: 453 A------GHGMDEAARVH-LNHVCISFKDVCGTGRSQISFAEVPLDKATEYAAEDADVTL 505 Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ + + ++ L + + G VD L+ L+ Sbjct: 506 RLWRLFKSRIANEGATRVYELVDRPLVGVIAKMEHEGIKVDREALSRLSAEFTAGIAALE 565 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQ 275 E+ +L + ++L LF + G ++ T +L K + Sbjct: 566 GEIHALAGQP-FAIGSTQQLGAILFDKMGYKGGRKGKSGAYSTDVTILEQLKAQGAEIAG 624 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + + S+ + L +N D T L ++TGR S QN+P + Sbjct: 625 KVLDWRQLSKLKSTYTDALQAQINKDSGRVHTSYSLSGAQTGRLSSTDPNLQNIPIRTEV 684 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G ++ AD + IE R+ A MA Sbjct: 685 GR-------------------------QIRHAFVAEPGNVILAADYSQIELRLAAHMADV 719 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF GED++ T + F +V +D R K + A+ Y + Sbjct: 720 PALKEAFANGEDIHAATAQQLFG----EVNRDTRGRAKTINFAILYG-----ISRWGLAG 770 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L ++ + + + ++ Sbjct: 771 RLEISA---------------------------------------DEAQDMISRYYERFP 791 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +S + + GR + + Sbjct: 792 GISLYITDTIEKARS--------------------------RGYTETLFGRKTWFPRIKA 825 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTV 628 + R +Q S DI+ M A ++L V Sbjct: 826 PVQHERQ---GAERAAINAP------IQGTSADIIKRAMARMGPALAAEGLHRVKMLLQV 876 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRYR 674 HDE+V E P+ D +A +++ +M P +PL E + Sbjct: 877 HDELVFELPEGDVEHAGAVIRRVMEGAAEPIVKLSVPLGVEIGHGSSWG 925 >gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957] gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957] Length = 960 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 100/701 (14%), Positives = 190/701 (27%), Gaps = 147/701 (20%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 + ID ET S + ++ + H Sbjct: 372 VCIDTETTSIDPML----------AQLVGISLSVQPGRACYIPVAHRGPDVSGLDAAAQL 421 Query: 51 --PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108 + ++ LE+ + V + ++ V + + T++ + Sbjct: 422 SREAVLARMRLWLEDEIRSKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRN 479 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 A ++ K E A EY D +T Sbjct: 480 HGMDALAERVLHLKTIT----------YEEVCGKGAAQIGFDEVALDRATEYAAEDADIT 529 Query: 169 REIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + + L P E + Q + G VD + + Sbjct: 530 LRLHRALYPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLVDAERLARQSAELGHRLLA 589 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273 L+QE +L + +++ F + L + T +T + VL + P Sbjct: 590 LEQEAYALAGQP-FNLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAEDYPLP 648 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + + R ++ + L + +N T + TGR + QN+P + Sbjct: 649 KLLLDYR-GLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRLASTDPNLQNIPVRT 707 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A G +V AD + IE R++A ++ Sbjct: 708 EEGRR-------------------------IREAFVAPAGSVIVSADYSQIELRIMAHLS 742 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G+ ++AF G+D++ T A F V P +VT +QR KV+ L Y A Sbjct: 743 GDDGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSA-----FGL 797 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + L + A + + + + ++ E + G Sbjct: 798 ASNLGIGRDAAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLP-----DI 852 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + +A G A K + + + + Sbjct: 853 NGGNGPRRQAAERAAINAPMQGTAADLIKLSMLAVQDWLEGS---------------PNA 897 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + + + ++Q VHDE+V Sbjct: 898 DKPGTPMRSRL----------------VMQ------------------------VHDELV 917 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P + L LM S +PL AE + Sbjct: 918 LEVPQDELARVRERLPELMCGVAS--LSVPLVAEVGVGSNW 956 >gi|331009449|gb|EGH89505.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 921 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 103/688 (14%), Positives = 194/688 (28%), Gaps = 156/688 (22%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 347 AQRAQLVGLSFATQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +D+ R T++ + + + + K Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G+Y + +T + + E Sbjct: 457 YLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQP 516 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VL+ + +V S+ + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L E +N T TGR S QN+P + Sbjct: 636 RLPEQINPRTGRIHTSYHQAVGVTGRLSSSDPNLQNIPIRTAEGRR-------------- 681 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ T Sbjct: 682 -----------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRAT 730 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 A F V VT D R K + G++ A + Sbjct: 731 AAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI------ 770 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 + + ++ V + + Sbjct: 771 ------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE-- 804 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 + GR L D+ + + R Sbjct: 805 ------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMAI 837 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA-S 645 +Q + DI+ + M+ ++L VHDE+V E + Sbjct: 838 NAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISE 891 Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ A +PL E + Sbjct: 892 QIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165] gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165] Length = 954 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 106/724 (14%), Positives = 199/724 (27%), Gaps = 177/724 (24%) Query: 1 MATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM------ 53 MA L +D ET + A ++ +FG ++ H + Sbjct: 353 MAELVAVDTETDNLD----------AMQANLVGISFGLENGEACYIPLAHKGKIAQPTQV 402 Query: 54 --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 LK LEN ++ + N ++ T+ ++ Sbjct: 403 DLFGESEAELDEVEALLPNQLNKADCLAQLKPILENPNIRKIGQNIKYDLTIFARY-GIE 461 Query: 88 IPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 + T++ + + + + E G + I E Sbjct: 462 LQGVA-FDTMLQSYTLDSTGRHNMDNLAERY--------LGHQTIPF----EELAGKGKH 508 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTIND 194 + EY D +T ++ + L E L + + Sbjct: 509 QLTFDQIELDKATEYAGEDAEITMKLHQLLWSELQKTPELVKLFEQIEMPLVSVLSRVER 568 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250 G +D A + ++ +L+ + V + ++L+ LF + GL Sbjct: 569 NGVLIDPAKLLAHSVEIEQRLKELETLVHQEAG-EVFNLASTKQLQEILFNKLGLPILKK 627 Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 +T + VL ++ Q + S+ + L + +N+ T Sbjct: 628 TPKGAPSTNEEVLEELAQMGHQVPVLLMEHRGLSKLKSTYTDKLPQMINAQTGRVHTSYH 687 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 + TGR S QN+P + +R IA Sbjct: 688 QAVTATGRLSSSDPNLQNIPIRNEQGRR-------------------------IRQAFIA 722 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 +G ++ AD + IE R++A +A + +KAF G+D++ +T A F V VT +QR Sbjct: 723 RDGYVILAADYSQIELRIMAHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSEQRR 782 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + L Y + L ++ + + + F ++E Sbjct: 783 SAKAINFGLIYGMS-----EFGLANQLGISRTDAKKYMELYFQRYPAVQQFMLDIREKAA 837 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 E + +R +P + Sbjct: 838 EKGYVETLF-----------------------------------------GRRLYLPEIN 856 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 R V N T + + N DI Sbjct: 857 SSNQM----------RRKAAERVAINAPMQGTAADIIKVAMIGIDQAVRN-----CEDI- 900 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYE 669 M+ + VHDE+V E ++ M +PL AE Sbjct: 901 --AMI----------MQVHDELVFEVKADRVEHYTQLIKAEMEKAIE--LKVPLIAEVGV 946 Query: 670 SKRY 673 + Sbjct: 947 GSNW 950 >gi|217965857|ref|YP_002351535.1| DNA polymerase [Listeria monocytogenes HCC23] gi|217335127|gb|ACK40921.1| DNA polymerase [Listeria monocytogenes HCC23] Length = 545 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 178/595 (29%), Positives = 270/595 (45%), Gaps = 67/595 (11%) Query: 97 LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-E 152 +V GLP++L + +AL+L+ +K EGK LI FC K RN P H E Sbjct: 1 MVHGTLLGLPASLDMMSKALRLAQEKDNEGKALIRYFCMPCKPTKANGGRTRNYPEHASE 60 Query: 153 AWRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 W F EYC+ DV V R I K++ P EQ W LDQ I D+G +DV L Sbjct: 61 KWAKFIEYCRQDVVVERSIAKKIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAIAC 120 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270 + + L ++ + LT + + +++LK WL + G + L + + +L+ + L Sbjct: 121 QERYQASLSKKAKGLTG--LENPNSVQQLKDWL-ADMGYPVSSLNKDSVSELLAD-EDLD 176 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 ++ R S++++ K + A DGR+RG LQF GA+RTGRW+G + QNLP Sbjct: 177 EDVREMLLLRQEMSKTSIKKYEKMQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLP 236 Query: 331 RPSRSHEEL---DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 R D + ++S +R+ IA +G + D + IEAR Sbjct: 237 RNYIKDIAEVRKDLKAGDYEAFEMMYSNVPDVLSQLIRTAFIAEDGYTFDITDFSAIEAR 296 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 V+AW+AGEQW+L F + +Y + ++ F++ +V K+ R GKV ELALGY GG A Sbjct: 297 VIAWLAGEQWRLDVFNSHGKIYEASASQMFHIPIEEVDKNLRQKGKVSELALGYNGGVNA 356 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 M A+E + + Sbjct: 357 LIAMG----------------------------------------ALEMGLKENELQGIV 376 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 AWR+ ++ LW + + + I K+ + + L + LPSGR+ Sbjct: 377 DAWRKASPAITSLWRGVEKHAKLAISTRKSQ------KYKGLTFYYEAGILFIKLPSGRN 430 Query: 568 LVYR-------DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 L Y G Y T + ++YTYGGKL ENIVQA++RD LA + Sbjct: 431 LAYFRAKLVPGKYGPQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAISLRRIEDT 490 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 G D V+ VHDE + E +++ + L ++ SWA GLPL+ +G+ S Y K Sbjct: 491 GIDTVMHVHDEAITEVQESE-SSVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 544 >gi|114328629|ref|YP_745786.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1] gi|114316803|gb|ABI62863.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1] Length = 933 Score = 386 bits (990), Expect = e-104, Method: Composition-based stats. Identities = 99/708 (13%), Positives = 186/708 (26%), Gaps = 170/708 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK------ 58 +D ET A+ ++ + H + Q ++ Sbjct: 355 AMDTETDGLD----------AQQCRLVGISLAIAPGKACYIPLDHQTTLDQPVRQPAIAE 404 Query: 59 ------EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SAL 109 L + V + N F+ VL+ I T++++ + + Sbjct: 405 IAAALNPILADPTVLKIFQNGKFDLAVLRRHQMPVIAP--IDDTMLISYAQEAGAHGHGM 462 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G I+ P + Y D VT Sbjct: 463 DELS--------VLHLGHSPISYD----QVTGTGRNRLPFPQVPIDKATAYAAEDADVTL 510 Query: 170 EIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 ++ L P E+ L + + G VD A ++ + ++ Sbjct: 511 RLWHALRPRLRETKSLTVYEQMERPLVPVLCAMEAAGIRVDEAELRRMSADFALRMADME 570 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL--TPQA 273 E+ L + ++L LF E GL ++T T L + Sbjct: 571 TEIHQLAGRP-FNLASPKQLGEVLFDEIGLTGSKRSKTGAWGTDAATLQAIADESGHALP 629 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ + LVE +N T + + TGR S QN+P + Sbjct: 630 ARILDWRQ-LAKLKSTYADALVEDVNPRTGRVHTSFQMAITTTGRLSSNEPNLQNIPIRT 688 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R IA G L+ AD + IE R+LA +A Sbjct: 689 EEG-------------------------SRIRRAFIADPGHVLISADYSQIELRLLAHVA 723 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 +F GED++ T + F V + R K + Sbjct: 724 DIPQLKDSFANGEDIHARTASEVFGVPMQGMDSLTRRRAKAINF--------------GI 769 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ A + A+ + Sbjct: 770 IYGIS------------------------------AFGLARSLAISPGEARQYIDAYFAR 799 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + + + N ++ P GR + Sbjct: 800 YPGIRDYMERTKEEAR--------------------------INGFVVTPFGRRCWVPGI 833 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627 + R+ Q + DI+ M+ ++L Sbjct: 834 ADRNPARRGY---AERQAINAPL------QGGAADIIKRAMVRLPAVLADNSFQTRMLLQ 884 Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674 VHDE++ E P+ + + L M +PL E + Sbjct: 885 VHDELLFEAPEAEAEAVARLVTTTMQDAAR--ISVPLVVETGIGTNWG 930 >gi|119713448|gb|ABL97509.1| DNA polymerase A [uncultured marine bacterium HOT0_02H05] Length = 970 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 107/701 (15%), Positives = 212/701 (30%), Gaps = 151/701 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHD-------PVMPQVL 57 D ET + + ++ + + P H + L Sbjct: 385 DTETTALNP----------REAELVGIGCCWGNKPTDIAYIPIAHKQGKQLRKEQVLDRL 434 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115 + LE+ + V N+ F+R + K +++ + T++ + L + E Sbjct: 435 QSILESNNYPKVFQNTKFDRLIFK-HQGINLD-GVVLDTMLASYVLHPEKSHKLSELCEQ 492 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L + + EYC D T + + L Sbjct: 493 Y------------LEGITSLDYKDLGIGKKQ-TIADLDIETVAEYCGMDAYATFLLVEPL 539 Query: 176 EPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + EQ L + + D G +D L++ ++ L++ Sbjct: 540 KNELKTLSTLDKLLLEVEQPLEPVLAIMEDTGIIIDSEYLGKLSKELEQHLLSLEENAYQ 599 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNN 279 + ++L LF + L+ + T+ +T L K P + Sbjct: 600 AAG-EKFNLGSPKQLGHILFEKLELNRKKSRKTKTGYSTDHATLEKLKGDHPIIDYILEY 658 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ ++ L E ++ D R+ + TGR S QN+P + Sbjct: 659 R-TLSKLKSTYIDALPELVDKIDQRIHTNFNQSV-TATGRLSSSNPNLQNIPIRTE---- 712 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 S +R I + LV AD + IE R+LA ++ EQ Sbjct: 713 ---------------------FSRQIRQAFIPQQDWLLVSADYSQIELRILAHLSQEQVL 751 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L A++ +D++ T F ++T +R +GK + + Y G++ F + A Sbjct: 752 LNAYKNADDVHSVTARLLF--DKEEITPQERTLGKTINFGVIYGMGSQRFAREA-----G 804 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++ N + + ++ M++ + +G + + Sbjct: 805 VSAVEGKEFINKYRQRYAKVFDYLESMKKEAIANGYVTTILGR------RRYFN------ 852 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + P ++ N+ Sbjct: 853 -------------------------------FFDDNLYRFRGHDPQ-------NIDLNKI 874 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634 +N QL R +Q S DI+ M+ + +++L VHDE+V Sbjct: 875 NINYNDSQLLRAAANAP------IQGSSADIIKIAMVKIQEILDNYQANLLLQVHDELVF 928 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E P + + M + + +PL E K + Sbjct: 929 EIPHQEWEELEDKIKETMENAVT--LTVPLVVEINTGKNWM 967 >gi|325108005|ref|YP_004269073.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305] gi|324968273|gb|ADY59051.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305] Length = 932 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 111/709 (15%), Positives = 205/709 (28%), Gaps = 169/709 (23%) Query: 1 MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV--------H 49 M ++ID ET S A + ++ +A Sbjct: 353 MKDCEEIYIDLETTSVT----------AMEADIVGWAVAAKPGEAFYIPVRGPAGQQTMD 402 Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106 + + + + LEN + I N ++ V K +++ +V Sbjct: 403 NQEVLDIFRPLLENPRIAISNQNIKYDLLVWKRH-GIELQKIGM-DPMVGHYLLDAGARS 460 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 L ++ + +M ELI K EY D Sbjct: 461 HGLSSLADE--FLKHRMIPISELI----------GTGKNQKRMDEIDIDQVAEYASEDAD 508 Query: 167 VTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVALAHTLNQIVDVERT 216 +I + +++ + + G VD +++V Sbjct: 509 AALQIADIIRDKLHEQELWNLYQDVERPLIGVLAEMEFAGIRVDDEELFRQSELVGRRVE 568 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNKKLTPQA 273 +L +ELE + + ++L+ LF E GL + +T Q VL L P Sbjct: 569 ELLEELEGMADRP-FNPDSPKQLREVLFDEIGLPVQKRTKTGPSTDQSVLEKLAPLHPLP 627 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 ++ R ++ L++L + +N GR+ + + A+ TGR S QN+P Sbjct: 628 AKIIEYRQ-LAKLKGTYLDSLPKLINQQTGRIHASFNQVVAA-TGRLSSSDPNLQNIPIR 685 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAW 391 + VR I G +L+ D + IE RVLA Sbjct: 686 TPEGR-------------------------QVRKAFIPGEPGWELLCCDYSQIELRVLAH 720 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +G+ +AF++G+D++ A F V A V D R + K + + Y Sbjct: 721 FSGDAALQEAFQSGKDIHTAVAAEVFEVDEANVDSDMRRVAKAVNFGVIYGQSP-----Y 775 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 LN+ + + F E Sbjct: 776 GLAAALNIPQEQAAEFIDDYFMRYPGVSQFIEETLEQCARSGYA---------------- 819 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + +RR + + GR+ Sbjct: 820 -------------------------YTMLGRRRPITG-----------IKNTGGRNRNMP 843 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625 + R ++Q + D++ M+N + ++ Sbjct: 844 E----------------RTAI------NTVIQGSAADLIKLAMLNVHRELATSGLSARML 881 Query: 626 LTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 L +HDE+V ETP + L M + +PL + + + Sbjct: 882 LQIHDELVFETPVEELEPLRELVHREMVNAHP--LSVPLVVDMKHGENW 928 >gi|330890984|gb|EGH23645.1| DNA polymerase I [Pseudomonas syringae pv. mori str. 301020] Length = 921 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 105/689 (15%), Positives = 197/689 (28%), Gaps = 158/689 (22%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +D+ R T++ + + + + K Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G Y + +T + + E Sbjct: 457 YLTHTPINFQEIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 517 VLHDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VL+ + +V S+ + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ + A TGR S QN+P + Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + G++ A + Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ V + + Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE- 804 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR L D+ + + R Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAK---TQSLRKGAERMA 836 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ + M+ ++L VHDE+V E + Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQIS 890 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ A +PL E + Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|146299377|ref|YP_001193968.1| DNA polymerase I [Flavobacterium johnsoniae UW101] gi|146153795|gb|ABQ04649.1| DNA polymerase I [Flavobacterium johnsoniae UW101] Length = 949 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 211/700 (30%), Gaps = 161/700 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59 + D ET L ++ +F ++ + Sbjct: 377 VCFDTETTGIDAL----------HAELVGMSFSYEKGKAFYVPFPESQEEAKVLIDKFVP 426 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117 EN ++ + N ++ +L + + + T++ + + E Sbjct: 427 FFENENIEKIGQNLKYDLKILSNY-GVTVK-GKLFDTMIAHYLINPDMRHNMDILAETY- 483 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + + LI + EY D VT ++ + Sbjct: 484 -LKYSPKSIETLIGK---------KGKNQLSMRDVPLEDIKEYAAEDADVTLQLKEIFTA 533 Query: 178 LSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 K + L + + G +DV +++ +DVE L++++ T Sbjct: 534 ELEKTETKKLFDEIEIPLVSVLADMETEGIRLDVEFLKQMSKEMDVEIKSLEEQIYE-TA 592 Query: 228 GLVSSSRCLEKLKTWLFLETGL------HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L LF + + + T + VL+ P Q+ + R Sbjct: 593 GEKFNLASPKQLGDILFDKLKIGGAKQKKTKTGQYATGEEVLTYLANDNPIVKQILDWRQ 652 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L E ++ T + TGR S QN+P + Sbjct: 653 MV-KLQSTYILALPEQVDKKTLRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGR---- 707 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R +A E L+ AD + IE R++A ++GE+ + Sbjct: 708 ---------------------QIRKAFVARDENYTLISADYSQIELRIIAALSGEENMIA 746 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ GED++ T A+ F+VA +V+++QR+ K + G++ Sbjct: 747 AFQNGEDIHRATAAKVFDVALEEVSREQRSNAKTVNF--------------GIIYGVSAF 792 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 ++ + + A+ + + R+ Sbjct: 793 GLSNQ------------------------------TSLSRSESAALIDAYYKTYPRLKSY 822 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 +E + + GR +D+ + + + Sbjct: 823 ISEQVDFARE--------------------------KGYVQTILGRRRYLKDINSANAVV 856 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 + + +Q + D++ M+N K ++L VHDE+V Sbjct: 857 RSAAERN---------AVNAPIQGSAADVIKIAMINIHKKLREENWKSKMLLQVHDELVF 907 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + + M+ H M + +PL+ E K + Sbjct: 908 DVHNDELEKIQPMIKHEMENAFK--MSVPLEVELGLGKDW 945 >gi|172037170|ref|YP_001803671.1| DNA polymerase I [Cyanothece sp. ATCC 51142] gi|171698624|gb|ACB51605.1| DNA polymerase I [Cyanothece sp. ATCC 51142] Length = 970 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 109/700 (15%), Positives = 215/700 (30%), Gaps = 149/700 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHD-------PVMPQVL 57 D ET ++ + ++P H + L Sbjct: 385 DTETTDLNP----------RQANLVGIGCCWGNNPTDIAYIPIGHKQGKQLKKEQVLDSL 434 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115 + LE++D V N+ F+R + K +++ T++ + L + E Sbjct: 435 RTILESSDYPKVFQNTKFDRLIFK-HQAINLD-GVVFDTMLASYVLHPEKSHKLSELCEQ 492 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L C+ + + EYC D T + + L Sbjct: 493 Y------------LEGITCQNYDELGISKKQ-TIADLDIEKVAEYCGMDAYGTFLLVEPL 539 Query: 176 EPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + + EQ L + + D G +D L++ ++ E + L+++ Sbjct: 540 KNELQQVPTLEQLLLEVEQPLEAVLSIMEDTGILIDTEYLGKLSKELEQELSSLEKKAYD 599 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNN 279 + ++L LF + L+ + T+ +T L K P + Sbjct: 600 -AAEEKFNLGSPKQLGEILFEKLELNRKKSRKTKTGYSTDHATLEKLKGDHPIIDYILEY 658 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ ++ L E +N + T + TGR S QN+P + Sbjct: 659 R-TLSKLKSTYIDALPELVNKKTKRIHTNFNQSVTATGRLSSSNPNLQNIPIRTE----- 712 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 S +R I + LV AD + IE R+LA ++ E L Sbjct: 713 --------------------FSRQIRQAFIPQKDWLLVSADYSQIELRILAHLSQESVLL 752 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 A++ ED++ T F ++T +R +GK + + Y G++ F + A + Sbjct: 753 NAYQNAEDVHTVTAKLLF--EKEEITPQERNLGKTINFGVIYGMGSQRFAREA-----GV 805 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + N + + + M++ + +G + + Sbjct: 806 SATEGKEFINKYRQRYAKVFEYLENMKKEAIANGYVTTILGR------RRYFNFFD---- 855 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + + N+ Sbjct: 856 -----DNLYRFRGHDPQT-----------------------------------IDLNKLN 875 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCE 635 +N QL R +Q S DI+ M+ + +++L VHDE+V E Sbjct: 876 INYNDSQLLRAAANAP------IQGSSADIIKIAMVKIQEILNYYQANLLLQVHDELVFE 929 Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 P+ + + + M + +PL E + K + Sbjct: 930 IPEKEWEELNHKIKETMENAVK--LTIPLVVEIHAGKNWM 967 >gi|158335307|ref|YP_001516479.1| DNA polymerase I [Acaryochloris marina MBIC11017] gi|158305548|gb|ABW27165.1| DNA polymerase I [Acaryochloris marina MBIC11017] Length = 957 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 101/699 (14%), Positives = 209/699 (29%), Gaps = 146/699 (20%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVHDP-------VMPQVL 57 D ET S D ++ + + H + L Sbjct: 371 DTETDSLSP----------RDAHLVGIGCCWQGEEQAIAYIPVGHKEGDNLDLETALEGL 420 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 + LE+ V N+ F+R V + + T++ + + Sbjct: 421 RPILESDVYPKVLQNAKFDRLVF-QFQGIQLQ-GVVFDTMLANYVLNPERSHNLTDLSRN 478 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + KEL+ + + + EYC DV T ++ ++LE Sbjct: 479 YLQITAKSYKELVK-------------KGQTIADLSITQVAEYCGLDVFTTYQLREKLEA 525 Query: 178 LS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + + G +D TL+ ++ + +L+ L Sbjct: 526 ELAAIPSLHGLFQEVELPLEAVLAVMETSGVRIDQEYLQTLSTQLEADLQRLEAGAYELA 585 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 + + ++L LF L ++ T+ +T L + P + R Sbjct: 586 G-EIFNLGSPKQLSEILFGRLELDVKKSRKTKLGYSTDAATLEKLQGDHPIIDVLLEYR- 643 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ ++ L + D T + TGR S QN+P + Sbjct: 644 TLAKLKSTYVDALPMLVRDDTHRIHTDFNQAVTATGRLSSSNPNLQNIPIRTE------- 696 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 S +R+ I L+ AD + IE R+LA ++ E L+A Sbjct: 697 ------------------FSRQIRAAFIPESSWILMAADYSQIELRILAHLSQEPRLLEA 738 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 + G+D++ T + Q+ ++R + K++ + Y G F + A + Sbjct: 739 YRNGQDVHTLTAQLL--LEKDQIAAEERRLAKIINFGVIYGMGPHRFAREA-----GVKY 791 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH-SRVSEL 520 + + + + + M+ + +G + + + + + Sbjct: 792 SEAKDFIQRFYDRYPEVFAYLQRMEREAVSQGYVETILGR------RRYFEFDSRGLKKY 845 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + +V + + Sbjct: 846 RGKALEE------------------------------------------LAEVDLSDIKM 863 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCET 636 ++ R L R +Q S D++ M+ A +++ VHDE+V E Sbjct: 864 SSYDRGLLRAAANAP------IQGSSADLIKIAMVQLQAALEPYKSRLLMQVHDELVLEV 917 Query: 637 PDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 P + + S + M + +PL AE + + Sbjct: 918 PVDEVDDVRSQIKTTMETALP--LSIPLVAEVHTGANWM 954 >gi|34610177|ref|NP_919002.1| DNA polymerase I [Burkholderia phage BcepNazgul] gi|34304552|gb|AAQ63369.1| DNA polymerase I [Burkholderia phage BcepNazgul] Length = 693 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 193/730 (26%), Positives = 310/730 (42%), Gaps = 96/730 (13%) Query: 2 ATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59 + +D+E+RS DL CG+ Y+ E +++ ++ F+ V+ W+ P ++E Sbjct: 3 DEIRLDYESRSEEDLPTCGLDIYSAHESTEILMASWSFNGGRVQQWEIRDGK-FPAEVRE 61 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 ALE+ +V A N+ FER + + ++ P W CT+ A L+ VG L L Sbjct: 62 ALEDPNVIKRAWNAQFERVMTRRVLKINTPYKNWRCTMARAYMLSFAGNLEMVGGQLGLP 121 Query: 120 SQK--MEEGKELIARFCKGETHECLY-DRNKPN--HREAWRLFGEYCKGDVTVTREI--F 172 K + GK+LI F K + + + W F Y + DV I + Sbjct: 122 QDKVKLATGKKLINLFSKPQRITKKNPHKWLDWQTNPFEWDDFLIYNQQDVIAEAAIDEW 181 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 P +E EL+ LDQ INDRG VD+ ++ + D + +L +++ ++T + + Sbjct: 182 LAPYPTLDEEWELYELDQLINDRGVPVDLDFCNSATAMADRRKLELVRQMRAITG--LEN 239 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ---AIQVFNNRMRASRSAVL 289 ++LK W+ G +DL + T ++VL+ +K +V RM+++R++V Sbjct: 240 PNSPQQLKPWVKAR-GYRFDDLGKDTVKKVLAEHKDEPVLTGRCDEVLKMRMQSARTSVG 298 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL---PRPSRSHEELDQIITHL 346 K V + RLR LQF GA RT RW+G NL P+ + D + + Sbjct: 299 KYKKFVSLVGPGRRLRFPLQFGGAQRTQRWAGRGVQVHNLGRTPKALEPDGDNDWALCTV 358 Query: 347 PTSITSDP---------DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +I + +P+ ++ CVRS + A EG + V DL+ IE V+AW+A Q Sbjct: 359 TNAIRAGDYDLLGLMMKEPMDGLAGCVRSAIYAPEGYEFVTCDLSSIETVVIAWLADCQP 418 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L F G Y R + V +VT R + K L GY+ G TGL Sbjct: 419 LLNVFREGRCAYREFATRLYGVEYPEVTSQMRTMSKPAVLGAGYRLGGGDLSHEGKRTGL 478 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + K +R+ + V Sbjct: 479 ------------------------------WGYAENMGIDMSRQEAHDSVKMYREAYPEV 508 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---- 573 +LW +L A +TI+ V V + L+ +LPSGR + Y Sbjct: 509 PQLWKDLEAAIIRTIKTKAVT------RVRYVSFEIVGEFLVAILPSGRRMYYHRPRIEK 562 Query: 574 ------------------GNNRSYL---------NTTTRQLTREYTYGGKLTENIVQAVS 606 G+ ++Y N ++ R+ ++GGK+TEN+VQA++ Sbjct: 563 KKFQKKNWKTGELLWNEDGSPQTYEKIGFSYMGFNQDIKKWLRQDSHGGKMTENLVQAIA 622 Query: 607 RDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKA 665 R+IL G+ NA K G +IVL VHDEIV D +L MT+ W + +P+ A Sbjct: 623 REILKYGLFNAHKKGLNIVLHVHDEIVTLRKIGDASKGLHVLKECMTAKRKWYEEMPVGA 682 Query: 666 EGYESKRYRK 675 G+ + YRK Sbjct: 683 AGWSAAFYRK 692 >gi|221135267|ref|ZP_03561570.1| DNA polymerase I [Glaciecola sp. HTCC2999] Length = 931 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 96/705 (13%), Positives = 199/705 (28%), Gaps = 161/705 (22%) Query: 8 FETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54 E S L + + ++ + +HD Sbjct: 345 IEKCSSAPLFGLQTFTSSAHYMEAQIVGISLCVAAGDACYIPLLHDYPDAPEQLNSQWAL 404 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 + L L+N+ V HN F++ VL + + + T++ + ++A Sbjct: 405 EQLTPLLKNSKNQKVGHNLKFDKNVLANH-GITLNGVAY-DTMLESYVLNSVVTKHHIEA 462 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + G I E+ + ++ + + + + Sbjct: 463 LSLHY--------LGHSPITL----ESIAGKGAKQLTFNQIGLAEAAPFAAENADIILRL 510 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E L + + G +D +Q + L++ Sbjct: 511 HQLLWPQLVNAPELANVVSELEVPLSQVLSRMEQTGVLIDSQKLAQQSQSLAERILHLEE 570 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+ LF + L + T +T + VL P + Sbjct: 571 TVHEMAG-EAFNLGSTKQLQHILFEKMNLPVIKKTPKGAPSTGEEVLQELALNYPLPKAI 629 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L + ++ T + TGR S QN+P + Sbjct: 630 MEYR-GLTKLKNTYTDKLPKLIDHRTGRVHTSYQQAITATGRLSSTDPNLQNIPIRTEEG 688 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + VR IA G K+V AD + IE R++A ++ + Sbjct: 689 RK-------------------------VREAFIARPGYKIVAADYSQIELRIMAHLSSDS 723 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G D++ T + F VA VT +QR K + G Sbjct: 724 GLLHAFANGLDVHKATASEVFGVALEHVTSEQRRSSKAINF--------------GLIYG 769 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + + + +++ Sbjct: 770 MS------------------------------AFGLAKQLNIPRGDAQHYMDTYFERYPG 799 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + + + + + GR L ++ ++ Sbjct: 800 VLQYMQDTREEAK--------------------------AQGYVKTVFGRRLYLPEITSS 833 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVH 629 + +Q + DI+ M+ + +++ VH Sbjct: 834 NGARRAGAER---------AAINAPMQGTAADIIKLSMLAVDNWIQTQDQSDICMIMQVH 884 Query: 630 DEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE++ E + S + LM + S A +PL E + + Sbjct: 885 DELIFEIKEQKVDAYSTKIIELMENAVSLA--VPLTVEFDVGENW 927 >gi|288961988|ref|YP_003452298.1| DNA polymerase I [Azospirillum sp. B510] gi|288914268|dbj|BAI75754.1| DNA polymerase I [Azospirillum sp. B510] Length = 972 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 105/708 (14%), Positives = 204/708 (28%), Gaps = 161/708 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------- 52 L +D ET S ++ + + H Sbjct: 384 LAVDTETDSLTP----------ATATLVGVSLSTEPGIACYIPLAHKAEGSAAAGQLDFD 433 Query: 53 ------------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 +LK+ LE+ V + HN F+ + I + +++++ Sbjct: 434 APPPPAQIPAAEAMAILKDVLEDPSVLKIGHNFKFDHQLFGRN---GITVSPVDDSMLIS 490 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 G + ++ E L + R Y Sbjct: 491 YVLE--------GGSHGHGMDELAELH-LAYTPIPFKEVCGTGKNQITFDRVPLDKALAY 541 Query: 161 CKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T ++ L+P + ++ L + + G +D L+Q Sbjct: 542 AAEDADITLRLWTLLKPRLVDSRMVTVYETLDRPLVPVVANMEREGVRIDQQALARLSQD 601 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266 + V ++++E+ +L + ++L LF L + +T VL Sbjct: 602 LSVRLAEIEKEVHALAGQS-FNIGSPKQLGEILFDTLKLGTGKKGKTGAYSTDSSVLEEL 660 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + Q + + ++ + L E ++ T L A+ TGR S Sbjct: 661 AEQGHTIAQRVLDWRQLAKLKSTYTDALQEKISPVTGRVHTAFALAATNTGRLSSTDPNL 720 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P + + +R +AS G KL+ D + IE Sbjct: 721 QNIPVRTEEGRK-------------------------IRRAFVASPGHKLLSVDYSQIEL 755 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A MA Q AF G D++ T A+ F + AQ+T D R K + + Y Sbjct: 756 RLVAEMADIQALKDAFRDGLDIHAATAAQVFGIPLAQMTPDIRRKAKAINFGIIYGISG- 814 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 L + + E + + + + + +H G C Sbjct: 815 ----FGLGRQLGIAPGEANAFIKTYLERFHELKVWMEATKAFARQHGYVATLFGRRC--- 867 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + + A + +AI A + + + Sbjct: 868 ------YMPGIQD-----KNAARRAFAERQAINAPIQGTAADIMKRAMNRM--------- 907 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 D A++ + ++L Sbjct: 908 ----PD-------------------------------ALAA----------AGSNARMLL 922 Query: 627 TVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE++ E P+ + +A+ + +M G+PL AE + Sbjct: 923 QVHDELLFEVPEAEVDDAARIVREVMEGAAH--LGVPLVAEAGIGDNW 968 >gi|119494050|ref|ZP_01624605.1| DNA polymerase I [Lyngbya sp. PCC 8106] gi|119452218|gb|EAW33419.1| DNA polymerase I [Lyngbya sp. PCC 8106] Length = 927 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 146/701 (20%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD-------PVMPQVL 57 D ET + D ++ + + H + + L Sbjct: 337 DTETTALEP----------RDAKLVGIGCCWGSEKTEIAYIPLEHKTGNQLKKETVLEAL 386 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115 + LE+ N+ F+R + K +++ T++ + L + Sbjct: 387 RPILESNKYPKALQNAKFDRLIFK-VQGINLA-GVVFDTMLASYVLNPDDSHNLTELSRK 444 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 S + K+L + + EYC DV T I +L Sbjct: 445 YLDSGILAKSYKQL------------SLSKKQTIADLDIPTAAEYCGLDVYATYLIVPKL 492 Query: 176 EPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 EL + + +G ++V L+ ++ + +++++ Sbjct: 493 RKELQDFPELHKLLLDIEQPLEPVLAEMEYQGIRINVDYLKQLSSQLEKKLEEIEKQAYQ 552 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNN 279 + ++L LF L + T+ +T +VL K P + + Sbjct: 553 EAGT-EFNLGSPKQLSKLLFETLELSTKKSRKTKTGYSTDAKVLEKLKGDHPIIDSILEH 611 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ ++ L E ++ + T + TGR S QN+P + Sbjct: 612 R-TLAKLKSTYVDALPELVHPQTQRIHTDFNQAITTTGRLSSSNPNLQNIPIRTE----- 665 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 S +R + G LV AD + IE R+LA ++ E + Sbjct: 666 --------------------FSRQIRQAFLPEPGWLLVSADYSQIELRILAHLSDEPILV 705 Query: 400 KAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +A++T D++ T F VT ++R GK + + Y GA F + + Sbjct: 706 EAYKTNRDIHTVTAQFLFEKDDIKDVTPEERRFGKTINFGVIYGMGALRFSRE-----MK 760 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 +NT +++E + ++ +G + + Sbjct: 761 VNTNKAKEFIERFNQQYEKLFEYLEEQKKQAISQGYVTTLLGR------RRYFH------ 808 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + P + K+ + L + Sbjct: 809 -------------------------FESPSLKALKESPLEDIPL------------DELK 831 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634 + Q R +Q S DI+ M+ ++L VHDE+V Sbjct: 832 KIGQNDAQFLRAAANAP------IQGSSADIIKIAMVKLRDVLQNYRAKLLLQVHDELVF 885 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E P + + M ++ +PL + + + Sbjct: 886 EVPPEEWEELQPQIKQTMEDA--YSLKVPLLVDIHAGDNWM 924 >gi|218961649|ref|YP_001741424.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans] gi|167730306|emb|CAO81218.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans] Length = 918 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 107/703 (15%), Positives = 207/703 (29%), Gaps = 162/703 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM---PQVLK 58 + +D ET SP + ++ +F D+ H + + Sbjct: 343 KQISLDTETDSPEPMR----------ANLVGISFCMDEKKAYYLPLGHQLAVNLPLPEVL 392 Query: 59 EALEN--TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG 113 LE+ ++ HN F+ VL L++ + T++ A +L+ Sbjct: 393 RHLEDALKGKLLLGHNLKFDLIVLARN-GLELD-NPLFDTMLAAYILDPGTLNYSLETCA 450 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L + KM +LI Y D +++ Sbjct: 451 --LNELNYKMIPISDLI----------GKGKNQSTFDLVEPEKACIYSAEDAWAVYKLYP 498 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 E L + Q + G +D ++ ++ +++E L ++ Sbjct: 499 VYRRKVDFSVMANLFDTIELPLIKVLQQMEMNGVAIDCSVLSEISHQINLELKTLTDKIY 558 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280 + + ++L LF E L T+ +T VL A + R Sbjct: 559 AFAGY-EFNINSTQQLAKLLFEEKKLPYGRKTKTGYSTDNSVLEELAIDYEIAGIIIQYR 617 Query: 281 MRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 S+ ++ L + +N GR+ + + TGR S QN+P + E Sbjct: 618 Q-LSKLQSTYVSALPKMINPQTGRIHSSFNQ-TVTSTGRLSSSNPNLQNIPVRTEIGRE- 674 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWK 398 +R A + ++ AD + IE R+LA M+ ++ Sbjct: 675 ------------------------IRKAFCAKDAEHLILDADYSQIELRLLALMSEDEVL 710 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++AF+ D++ A+ FNV +VT DQR K + G+ Sbjct: 711 IEAFKQDLDIHKRMAAKIFNVDIEKVTPDQRRAAKTINF--------------GILYGMG 756 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + E + + + + + Sbjct: 757 Q------------------------------RKLSRELGISLNEAKDIIDGYYAQFPSIR 786 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 N+ Q GR L ++ + Sbjct: 787 NFINQCVNKARQQH--------------------------YAETLFGRRLYLPNIDSKNQ 820 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGYDIVLTVHDEIV 633 L + + R +Q + D++ M+N K ++L VHDE++ Sbjct: 821 GLKS---EAERIA------VNMPIQGTAADLIKIAMLNIHKQIDKREDIKMILQVHDELL 871 Query: 634 CETPDTDEFNASMLYH-LMTSN--PSWAKGLPLKAEGYESKRY 673 E + M S P +A+ + LK + K + Sbjct: 872 FEVQQEALEETKNIVKTCMESALPPKYAEKVHLKTDVGVGKNW 914 >gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755] gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755] Length = 954 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 107/724 (14%), Positives = 200/724 (27%), Gaps = 177/724 (24%) Query: 1 MATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ---- 55 MA L +D ET + A ++ +FG ++ H + Q Sbjct: 353 MAELVAVDTETDNLD----------AMQANLVGISFGLENGEACYIPLAHKGKITQPTQV 402 Query: 56 ----------------------------VLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 LK LEN ++ + N ++ T+ ++ Sbjct: 403 DLFGESEAELDEVEALLPNQLNKADCLVQLKPILENPNIRKIGQNIKYDLTIFARN-GIE 461 Query: 88 IPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 + T++ + + + + E G + I E Sbjct: 462 LQGVA-FDTMLQSYTLDSTGRHNMDNLAERY--------LGHQTIPF----EELAGKGKH 508 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTIND 194 + EY D +T ++ + L E L + + Sbjct: 509 QLTFDQIELDKATEYAGEDAEITMKLHQLLWSELQKTPELVKLFEQIEMPLVSVLSRVER 568 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250 G +D A + ++ +L+ + V + ++L+ LF + GL Sbjct: 569 NGVLIDPAKLLAHSVEIEQRLKELETLVHQEAG-EVFNLASTKQLQEILFNKLGLPILKK 627 Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 +T + VL ++ Q + S+ + L + +N+ T Sbjct: 628 TPKGAPSTNEEVLEELAQMGHQVPVLLMEHRGLSKLKSTYTDKLPQMINAQTGRVHTSYH 687 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 + TGR S QN+P + +R IA Sbjct: 688 QAVTATGRLSSSDPNLQNIPIRNEQGRR-------------------------IRQAFIA 722 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 +G ++ AD + IE R++A +A + +KAF G+D++ +T A F V VT +QR Sbjct: 723 RDGYVILAADYSQIELRIMAHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSEQRR 782 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + L Y + L ++ + + + F ++E Sbjct: 783 SAKAINFGLIYGMS-----EFGLANQLGISRTDAKKYMELYFQRYPAVQQFMLDIREKAA 837 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 E + +R +P + Sbjct: 838 EKGYVETLF-----------------------------------------GRRLYLPEIN 856 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 R V N T + + N DI Sbjct: 857 SSNQM----------RRKAAERVAINAPMQGTAADIIKVAMIGIDQAVRN-----CEDI- 900 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYE 669 M+ + VHDE+V E ++ M +PL AE Sbjct: 901 --AMI----------MQVHDELVFEVKADRVEHYTQLIKAEMEKAIE--LKVPLIAEVGV 946 Query: 670 SKRY 673 + Sbjct: 947 GSNW 950 >gi|302381367|ref|YP_003817190.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264] gi|302191995|gb|ADK99566.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264] Length = 994 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 103/724 (14%), Positives = 195/724 (26%), Gaps = 184/724 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49 + D ET + A + + + H Sbjct: 398 VVGFDTETDALS----------ATHAGLCGVSLAIGPNDACYVPLTHEHPPVEGAGGLDF 447 Query: 50 --------------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 P + LK LE+ V V N ++ V+ I + Sbjct: 448 GGDTDARPPLDQLDKPTVLARLKGLLEDPGVLKVVQNGKYDLAVMAR---RGIRVAPIDD 504 Query: 96 TLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 T++++ + + + G E I K Sbjct: 505 TMLISYVLEGGLHGHGMDELSR--------LHLGHEPIPFKS----VAGTGKAQKSFKHV 552 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE----------LWYLDQTINDRGYCVDVA 202 + Y D VT +++ L+P + E+ + + + RG VD A Sbjct: 553 ELKPATCYAAEDADVTLRLWRILKPRLATERLATVYETLERGMPAVLADMELRGIRVDPA 612 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----T 258 L+ + +L+ + + + ++ LF E L T + T Sbjct: 613 RLRRLSSEFGLRMAELEAQAHEIAGRP-FNVGSPRQIGEILFGELNLPGGKKTASGQWET 671 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 L + + + R S+ + LV AM+ T L A+ TGR Sbjct: 672 GAATLEGLAETHALPRVLLDWRQ-LSKLKGTYTDALVAAMDPQTDRVHTSYQLAAATTGR 730 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378 + QN+P + + +R IA +G L+ Sbjct: 731 LASSDPNLQNIPIRTETGR-------------------------QIRQAFIAKDGHVLIS 765 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R+LA + +AF+ G D++ T + F V A + + R K + Sbjct: 766 ADYSQIELRLLAHIGDIPELKRAFKAGIDIHTATASEMFGVPVADMDPETRRRAKAINF- 824 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ A+ + + Sbjct: 825 -------------GIVYGISAFGLANQLGIDQG--------------------------- 844 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 K + ++ + + Sbjct: 845 ---EAGAYIKTYFERFPGIRTYMDATRAEVRS--------------------------LG 875 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN-- 616 + GR + + + R +Q + DI+ M+ Sbjct: 876 FVSTVFGRKIHIPAIASKSGAERQF---GERAAINAP------IQGAAADIIRRAMIRMP 926 Query: 617 --ATKAGY--DIVLTVHDEIVC-ETPDTDEFNASMLYHLMTSN--PSWAKGLPLKAEGYE 669 AG ++L VHDE+V E ++ +M P+ A +PL + Sbjct: 927 GALEAAGLETKMLLQVHDELVFEAPEAEVEAAIPLIKRIMEGAAEPAVALSVPLVVDARA 986 Query: 670 SKRY 673 +K + Sbjct: 987 AKNW 990 >gi|241761481|ref|ZP_04759569.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374388|gb|EER63885.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 921 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 101/713 (14%), Positives = 204/713 (28%), Gaps = 175/713 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE--- 59 + +D ET + A ++ + + C H K Sbjct: 340 QVAVDTETDNLD----------ATQAQLVGVSLSTEAGKACYIPCGHGGHDLLDQKPDQM 389 Query: 60 -----------ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-- 106 LE+ + + N ++ VL I + + T++L+ Sbjct: 390 DLLLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRY---GISVQPFDDTMLLSYDLDAGRH 446 Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 + + + I+ + Y D Sbjct: 447 GHGMDELSLLY--------FDHQPISFKS----VCGTGKSAITFNHVPIPAATRYAAEDA 494 Query: 166 TVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 +T ++ L+P ++ L + + G VD H L+ + Sbjct: 495 DITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSRFAHDI 554 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271 ++L++E+ +L ++L LF GL +++ T L Sbjct: 555 SRLEEEIYALAGCR-FLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERLAAEGE 613 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + S+ + L+ +N + T L ++TGR S QN+P Sbjct: 614 VIASKILEWRQLSKLKSTYSDALIGKINPETGRVHTSFSLVGAQTGRLSSTDPNLQNIPI 673 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + E +R+ IA +G L+ AD + IE R+ A Sbjct: 674 RTEIGRE-------------------------IRNAFIAKKGHLLLSADYSQIELRLAAH 708 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +A E+ L+AF+ ED++ T + F V ++ RA K + A+ Y Sbjct: 709 VADEKALLQAFQEKEDIHALTAKQLFGH----VDRESRARAKTINFAILY---------- 754 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ A ++ + + + + Sbjct: 755 ----GISAWGLAARLEIDRFS------------------------------AQEMIDRYF 780 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ + + + + P GR Sbjct: 781 ERFPAIRHYIDRTLDFVR--------------------------LHGYVETPFGRKTHLP 814 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-------I 624 + + + R+ +Q +S DI+ M+ A + Sbjct: 815 AIKSRKVTERQA---AERQAINAP------IQGMSADIIKRAMVRMEPALAKVGLSSVKM 865 Query: 625 VLTVHDEIVCETPDTDEFNAS-MLYHLMTSN--PSWAKGLPLKAEGYESKRYR 674 +L VHDE++ E P+ D A ++ +M P + L+ E + Sbjct: 866 LLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIVQLSVDLEVEIGTGTSWG 918 >gi|295687670|ref|YP_003591363.1| DNA polymerase I [Caulobacter segnis ATCC 21756] gi|295429573|gb|ADG08745.1| DNA polymerase I [Caulobacter segnis ATCC 21756] Length = 966 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 101/715 (14%), Positives = 196/715 (27%), Gaps = 175/715 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51 + D ET + + + H Sbjct: 379 VVAFDTETDALSS----------ATAGLCGVSLAIAPGEACYIPVGHCEKEGLALEAAAD 428 Query: 52 -------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ V VA N+ ++ VL I + T++++ Sbjct: 429 LVQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH---GIQVSPIEDTMLISYVLE 485 Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + E + G + I + A Y Sbjct: 486 AGLHGHGMDELSE--------LWLGHKPIPF----KQVAGTGKAQISFKHVALSEATAYA 533 Query: 162 KGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT +++ L+P ++E + + + + + G VD L+ Sbjct: 534 AEDADVTLRLYETLKPRLAREGLLTVYETLERPMPAVLAAMENDGIKVDPEALRRLSNEF 593 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + + + L + +++ LF E + T +T VL S Sbjct: 594 SLRMAEFEARATELVGRP-FNLGSPKQIGDVLFGEMQIKGGKKTATGQWSTDSDVLESLA 652 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + R S+ LV A+ T L A+ TGR S Q Sbjct: 653 LEHELPRVLLDWRQ-LSKLKGTYTENLVAAIAERTGRVHTSYALAATTTGRLSSSDPNLQ 711 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + + +R IA +GK L+ AD + IE R Sbjct: 712 NIPVRTEEGRK-------------------------IRKAFIAPQGKVLISADYSQIELR 746 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA + +AF+ G D++ T + F+ + R K + Sbjct: 747 LLAHIGDIPQLKRAFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAIN----------- 795 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A + Sbjct: 796 ---FGIVYGIS------------------------------AFGLANQLGIPQGEAGAYI 822 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 K + ++ + + + + + GR Sbjct: 823 KTYFERFPGIQAYMDATKAFVRE--------------------------HGYVTTIFGRK 856 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 + ++ R +Q + D++ M+ +A Sbjct: 857 INIPEIQAKSVGQRQF---AERAAINAP------IQGAAADVMRRAMIRMPEALQAAGLS 907 Query: 622 YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E P+ + A ++ ++M P+ A +PL E + + Sbjct: 908 ARMLLQVHDELVFEAPEAEAETARGVIANVMEKAAEPAVALSVPLTVEVRAAHNW 962 >gi|166364552|ref|YP_001656825.1| DNA polymerase I [Microcystis aeruginosa NIES-843] gi|166086925|dbj|BAG01633.1| DNA polymerase I [Microcystis aeruginosa NIES-843] Length = 956 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 105/701 (14%), Positives = 206/701 (29%), Gaps = 151/701 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD-------PVMPQVL 57 D ET ++ + + H ++ + L Sbjct: 371 DTETTDLNP----------RVAKLVGIGCCWGKELNAMAYIPIGHQSGDNLNLEIVLEKL 420 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115 + L + D V N+ F+ V + + T+V + L+ + + Sbjct: 421 RPILASDDYPKVFQNAKFDIDVF-YHQGITVK-GLVFDTMVASYVLHPELTHNLEDLCDR 478 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L+ K L K YC D T + ++L Sbjct: 479 Y-LTGITSLSYKSLGIPAGK------------TIADLDIPTTANYCGLDAYATYLLREKL 525 Query: 176 EPLSSKEQELWY-----------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + +K L+ + + + G +++ +Q ++ + +++ Sbjct: 526 QAELTKIPPLYQLFSEIESPLVMVLWQMENYGIKININYLKNFSQQLERDLAYIEKNAYE 585 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNN 279 + ++L LF L+ + T+ +T Q VL + P + + Sbjct: 586 SIG-ETFNLSSPKQLSEILFDRLALNRKKSRKTKTGYSTDQSVLEKLQGDHPLVDYILEH 644 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ ++ L + T + TGR S QN+P S Sbjct: 645 R-TLSKLKSTYVDALPKLAEPKTARVHTDFNQTITSTGRLSSSNPNLQNIPIRSE----- 698 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 S +R I G LV AD + IE R+LA ++ E L Sbjct: 699 --------------------FSRRIRQAFIPENGYLLVSADYSQIELRILAHLSQEPVLL 738 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +A+ + +D++ T F ++T ++R++GK + + Y GA+ F + + L Sbjct: 739 EAYRSNQDVHKVTAQLLF--DKREITPEERSLGKTINFGVIYGMGAQKFARESK-----L 791 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ-KHSRVS 518 + + + ++ + +G + + + + Sbjct: 792 TVEQGRKFIEKYHQRYAQVFEYLENSKKQAITQGYVETILGR------RRYFNFDNPLLK 845 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 L R L D+ + Sbjct: 846 RL---------------------------------------------RGLSLHDIDLDSL 860 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634 LN QL R +Q S DI+ M+ + ++L VHDE+V Sbjct: 861 KLNNEEAQLLRSAANAP------IQGSSADIIKVAMVKLAEVLQNYRARLLLQVHDELVL 914 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E P + + + M S +PL E + Sbjct: 915 EVPREEWPSLESKIKTTMEEAVS--LTIPLLVEIKAGDNWM 953 >gi|90426328|ref|YP_534698.1| DNA polymerase I [Rhodopseudomonas palustris BisB18] gi|90108342|gb|ABD90379.1| DNA polymerase I [Rhodopseudomonas palustris BisB18] Length = 1021 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 99/712 (13%), Positives = 200/712 (28%), Gaps = 168/712 (23%) Query: 8 FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------------- 51 E ++ D+ + + A + H Sbjct: 428 LEAKATFDIKSAVVDP--MQAELTGLALALGPNEACYVPLGHRQSGDAAGLFASGLEPDQ 485 Query: 52 ----VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP- 106 + L+ LE+ V + N F VL A + + +++ + Sbjct: 486 IAARDALEALRPILESPGVLKIGFNIKF-TAVLLAQHGITLQNA--DDVQLMSYALDAGR 542 Query: 107 --SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 L A+ E G + ++ + A Y D Sbjct: 543 HAHGLDALAE--------TWLGHKTLSY----GEVIGSGKAKLSFDQVAIDRATCYAAED 590 Query: 165 VTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 V +++ L+P + E+ L + + RG +D A+ L+ Sbjct: 591 ADVALRLWRVLKPRLVAERMTTVYETLERPLIGVLARMERRGISIDRAVLARLSGDFAQT 650 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLT 270 +++ E+ + + ++L LF + L T+ +T +VL + Sbjct: 651 AARIEAEIREIAG-EEINIGSPKQLGDILFGKMQLPGGSKTKTGAWSTSAQVLEELAEQG 709 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 + + + + S+ + L ++ T L A+ TGR S QN+P Sbjct: 710 HEFPRKILDWRQVSKLRSTYTDALPTYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIP 769 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 + + +R IA+ G KLV AD + IE R+LA Sbjct: 770 VRTEDGRK-------------------------IRRAFIAAPGHKLVSADYSQIELRLLA 804 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 +A +AF+ G D++ T + F V + + R K + Sbjct: 805 EIADIPVLKQAFQDGLDIHAMTASEMFGVPIKDMPSEVRRRAKAINF------------- 851 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 G++ A + K + Sbjct: 852 -GIIYGIS------------------------------AFGLANQLGIPREEAGAYIKKY 880 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 ++ + + + + GR Y Sbjct: 881 FERFPGIRAYMDATRDFCR--------------------------AHGFVETLFGRKCHY 914 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDI 624 D+ + + + R Q + DI+ M+ K + Sbjct: 915 PDIKASNA---SVRAFNERAAINARL------QGTAADIIRRAMVRMEDALAEKKLSAQM 965 Query: 625 VLTVHDEIVCETPDTDEFN-ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 +L VHDE++ E D + ++ +M P+ +PL+ + + + Sbjct: 966 LLQVHDELIFEVADDEVAATLPVVQQVMQDAPFPAVLLSVPLQVDARAANNW 1017 >gi|294053806|ref|YP_003547464.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221] gi|293613139|gb|ADE53294.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221] Length = 930 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 106/695 (15%), Positives = 196/695 (28%), Gaps = 159/695 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64 D ET + ++ +F H L+ + Sbjct: 365 AFDSETTALNP----------RQAELVGLSFATKAHSGWWVPASS--EALDALRPLFADN 412 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLP--SALKAVGEALKLSSQ 121 +T + HN F+ +L A P+ T++ L + E Sbjct: 413 SITKIGHNLKFDLAILAAQ---SCPVDGPCYDTMLAHALIEPEQRHNLDTLAEDY--LRY 467 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS- 180 EL+ KG + +Y D VT ++++ +P Sbjct: 468 STIRFSELMPDAKKGSP--------LDYSSVDPQALADYATEDADVTLQLWECFKPKLEE 519 Query: 181 ---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L + + G + ++++ + ++ G Sbjct: 520 SGQASIFYEIETPLLPVLVAMESEGIRLCTETLEETGRVLEGQIA-TLKDAVYAAAGREF 578 Query: 232 SSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L LF E L T+T T ++VLSS P + R S+ Sbjct: 579 NLNSPKQLGEVLFNELKLVDKPKKTKTGQFATNEQVLSSLAPKHPIVADLLEYRQ-LSKL 637 Query: 287 AVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 ++ L A++ GR+ + + TGR S QN+P S E Sbjct: 638 KSTYIDALPNAVDPVSGRVHTHYGQVQ-TATGRLSSNDPNLQNIPVRSAQGRE------- 689 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +R + EG L+ AD + IE R+LA + ++ L AF G Sbjct: 690 ------------------IRKAFVPREGWTLLAADYSQIELRILAALTADEGLLTAFREG 731 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D++ T A+ F V V++DQR+ K++ + Y A + Sbjct: 732 RDIHTATAAKIFEVDADTVSRDQRSTAKMVNFGIPYGISAFGLAQ--------------- 776 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 T + + + + + Sbjct: 777 ----------------------------RLGTVSRTEAQNIIDNYFAQFPGIPGYMQAQQ 808 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 ++ + GR RD+ + T Sbjct: 809 ESAR--------------------------AKGYVATVCGRRRYLRDINSGN---GTIRA 839 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDT 639 R +Q + D++ M+ A ++L VHDE++ + Sbjct: 840 AAERNAINMP------IQGTAADMIKLAMIRVHHAIIDAGLKSRMLLQVHDELIFDLAPG 893 Query: 640 DEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 +E L M A P++ E + Sbjct: 894 EESALRQLVTGGMQDALQLA--CPIEIEIGTGMNW 926 >gi|37524397|ref|NP_927741.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783821|emb|CAE12681.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1] Length = 929 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 106/695 (15%), Positives = 204/695 (29%), Gaps = 147/695 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S LT ++ +F HD V+ Sbjct: 352 AFDTETDSLDTLT----------ANLVGVSFAISAGDAAYLPLGHDYLGAPEQLDREVVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE++++ + N F+R VL +++ + T++ + + + Sbjct: 402 AALKPLLEDSNLLKIGQNIKFDRGVLARY-GIELQGIAY-DTMLESYVLNSVAGMG---- 455 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + E L + E ++ A Y D VT + + Sbjct: 456 --RHDMDSLAERH-LNHKTTTFEEIAGKGKNQLTFNQVAVEQAAMYAAEDADVTLLLHQA 512 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + + G +D + ++ + +L++E Sbjct: 513 MWPQLEKAPTLEKVFLNTEMPLVMVLSRMERTGVLIDANILAEHSKEITARLDELEKEAH 572 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 L V + ++L+T LF + L + T +T + VL + + Sbjct: 573 ELAG-EVFNLASPKQLQTILFEKLQLPVVKKTPNGAPSTNEEVLEELADTHALPKVILEH 631 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L + ++ + T + TGR S QN+P ++ Sbjct: 632 R-GLAKLKSTYTDKLPQMVHPLTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRNKEGRR- 689 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A EG +++ AD + IE R++A ++ +Q L Sbjct: 690 ------------------------IRQAFVAPEGYRIMAADYSQIELRIMAHLSQDQGLL 725 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 KAF G+D++ T A F + QVT +QR K + L Y A + L + Sbjct: 726 KAFAEGKDIHRATAAEVFGLPLEQVTSEQRRSAKAINFGLIYGMSA-----FGLSRQLGI 780 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + E + + ++ E + G R R Sbjct: 781 PRGEAQRYMDLYFERYPGVLAYMERTRKQAEEQGYVETLDGRRLYLSDIKSRNAMRR--- 837 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G A K+ + + + Sbjct: 838 --KAAEREAINAPMQGTAADIIKKAMIAVDDWIVSEEPK--------------------- 874 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 I+Q +V VH ++ Sbjct: 875 ------------------VRMIMQ-------------VHDE---LVFEVH--------ES 892 Query: 640 DEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + A + LM + +PLK + + Sbjct: 893 ELEYAEQKIRELMEKSM--VLDVPLKVDVGIGDNW 925 >gi|67923259|ref|ZP_00516744.1| DNA polymerase A [Crocosphaera watsonii WH 8501] gi|67854885|gb|EAM50159.1| DNA polymerase A [Crocosphaera watsonii WH 8501] Length = 970 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 107/701 (15%), Positives = 212/701 (30%), Gaps = 151/701 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHD-------PVMPQVL 57 D ET + + ++ + + P H + L Sbjct: 385 DTETTALNP----------REAELVGIGCCWGNKPTDIAYIPIAHKQGKQLRKEQVFDRL 434 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115 + LE+ + V N+ F+R + K +++ + T++ + L + E Sbjct: 435 QSILESNNYPKVFQNTKFDRLIFK-HQGINLD-GVVLDTMLASYVLHPEKSHKLSELCEQ 492 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L + + EYC D T + + L Sbjct: 493 Y------------LEGITSLDYKDLGIGKKQ-TIADLDIETVAEYCGMDAYATFLLVEPL 539 Query: 176 EPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + EQ L + + D G +D L++ ++ L++ Sbjct: 540 KNELKPLSTLDKLLLEVEQPLEPVLAIMEDTGIIIDSEYLGKLSKELEQHLLSLEENAYQ 599 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNN 279 + ++L LF + L+ + T+ +T L K P + Sbjct: 600 AAG-EKFNLGSPKQLGHILFEKLELNRKKSRKTKTGYSTDHATLEKLKGDHPIIDYILEY 658 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ ++ L E ++ D R+ + TGR S QN+P + Sbjct: 659 R-TLSKLKSTYIDALPELVDKIDQRIHTNFNQSV-TATGRLSSSNPNLQNIPIRTE---- 712 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 S +R I + LV AD + IE R+LA ++ EQ Sbjct: 713 ---------------------FSRRIRQAFIPQQDWLLVSADYSQIELRILAHLSQEQVL 751 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L A++ +D++ T F ++T +R +GK + + Y G++ F + A Sbjct: 752 LNAYKNADDVHSVTARLLF--DKEEITPQERTLGKTINFGVIYGMGSQRFAREA-----G 804 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++ N + + ++ M++ + +G + + Sbjct: 805 VSAVEGKEFINKYRQRYAKVFDYLESMKKEAIANGYVTTILGR------RRYFN------ 852 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + P ++ N+ Sbjct: 853 -------------------------------FFDDNLYRFRGHDPQ-------NIDLNKI 874 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634 +N QL R +Q S DI+ M+ + +++L VHDE+V Sbjct: 875 NINYNDSQLLRAAANAP------IQGSSADIIKIAMVKIQEILDNYQANLLLQVHDELVF 928 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E P + + M + + +PL E K + Sbjct: 929 EIPHQEWEELEDKIKETMENAVT--LTVPLVVEINTGKNWM 967 >gi|331006814|ref|ZP_08330074.1| DNA polymerase I [gamma proteobacterium IMCC1989] gi|330419366|gb|EGG93772.1| DNA polymerase I [gamma proteobacterium IMCC1989] Length = 782 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 104/699 (14%), Positives = 199/699 (28%), Gaps = 150/699 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + C HD + Sbjct: 200 AFDTETTSLDYM----------QAKIVGVSFAVNAGEAAYVPCGHDYMGAPEQLSLECVL 249 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LEN + V N +++ VL ++D+ + T++ + + + Sbjct: 250 AALKPLLENPNKHKVGQNLKYDKHVLLNH-DIDLQGIAY-DTMLESYVCNSVATRHDMDS 307 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECL-YDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + L E + ++ + Y D VT + Sbjct: 308 LARFY------------LDRSTIHFEDVAGKKGAKQLTFNQIDIEIAAPYAAEDADVTLQ 355 Query: 171 IFKRLEPLSSKEQELWYLD-----------QTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + + P +E L ++ I G VD L + ++ +L+ Sbjct: 356 LHQAIWPTLQQEPTLQHVLESIEIPLLPVISRIERNGALVDATLLGQQSIELEQRLKELE 415 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 +E + + ++L LF + L + T +T + VL P Sbjct: 416 KEAFDIAG-EEFNLSSPKQLGVILFEKLELPIIKKTPKGAPSTAEEVLQELALDYPLPKV 474 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +R S+ + L + +N T + TGR S QN+P + Sbjct: 475 LIEHR-GLSKLKSTYTDKLPQMINPATGRIHTSYHQAVTATGRLSSSDPNLQNIPIRNAE 533 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A +G K++ AD + IE R++A ++G+ Sbjct: 534 GRR-------------------------IRQAFVAPKGYKILAADYSQIELRIMAHLSGD 568 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L+AF G+D++ T A F V QVT++QR K + L Y A Sbjct: 569 EGLLEAFNQGKDVHSATAAEVFGVELDQVTQEQRRRAKAINFGLIYGMSA-----FGLAK 623 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + + E + +++ +++ + G + R Sbjct: 624 QLGVGRNDAQQYIDVYFERYPGVKSYMDGVRQQAAVDGYVETLEGRRLYLPEINARNGMR 683 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + G A KR + + Sbjct: 684 R-----QAAERTAINAPMQGTAADIIKRAMIAVDQWLC---------------------- 716 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 T M +V E Sbjct: 717 -------PTNPKDESAVNA----------------KMIM-QVHDE-----------LVLE 741 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++D L +MT+ +PL + + Sbjct: 742 VKESDLDAVREKLKRVMTTTVE--LSVPLIVDVGVGDNW 778 >gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010] gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010] Length = 894 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 105/703 (14%), Positives = 200/703 (28%), Gaps = 158/703 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 D ET S L + ++ +F HD Sbjct: 315 KLFAFDTETTSLDYL----------EARIVGVSFAVKAGEAAYLPLNHDYPGAPDQLDFD 364 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLP---S 107 + LK LE+ V N ++R VL DI + T++ + Sbjct: 365 AVMADLKPLLEDPTKLKVGQNLKYDRHVLLNH---DINLQGIAHDTMLESYVLDSTATRH 421 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 + ++ + K L E + ++ Y D + Sbjct: 422 DMDSLAK------------KYLDRDTIHFEDIAGKGKKQLTFNQIGLEEAAPYAAEDADI 469 Query: 168 TREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 T ++ + L P E L + T+ G +D+ + + + + + Sbjct: 470 TLQLHETLWPRIQAIPSLVKVYSELEMPLLPVLNTLERNGVNIDIWMLQSQSDNMAHQIA 529 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQ 272 +L+++ + ++L+ L+ + L ++ T +T + VL + Sbjct: 530 ELEKQAHESAGQT-FNLGSPKQLQEILYEKQELPVKKKTPKGQPSTAEEVLQGLADDGYE 588 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 Q+ S+ + L +N T + TGR S QN+P Sbjct: 589 LPQIIMQYRGLSKLKSTYTDKLPLQVNKSSGRVHTSYHQAVTATGRLSSSDPNLQNIPIR 648 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 S + +R +AS G L+ AD + IE R++A + Sbjct: 649 SENGRR-------------------------IREAFVASNGYTLLAADYSQIELRIMAHL 683 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ LKAF GED++ T + F++A V+ DQR K + L Y A Sbjct: 684 SGDESLLKAFAAGEDIHRHTASEIFDIALEDVSSDQRRSAKAINFGLIYGMSAHGL---- 739 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + L + + + + + +E E + Sbjct: 740 -SKQLGIERHQAADYMQTYFDRYPGVRQYMDNTREQAKEQGYVETIF------------- 785 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 +R +P + +G Y + Sbjct: 786 ----------------------------GRRLYLPEINSS-----------NGMRRQYAE 806 Query: 573 VGNNRSYL-NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 + + + + R D M+ + VHDE Sbjct: 807 RTAINAPMQGSAADIIKRAMIAIHSWL------SEAD-TGIRMI----------MQVHDE 849 Query: 632 IVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E P A + M +PL+ + Sbjct: 850 LVFEVPLEQLDMAKDTIEKFMMGAAE--LKVPLEVGIGVGDNW 890 >gi|150021780|ref|YP_001307134.1| DNA polymerase I [Thermosipho melanesiensis BI429] gi|149794301|gb|ABR31749.1| DNA polymerase I [Thermosipho melanesiensis BI429] Length = 890 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 121/702 (17%), Positives = 221/702 (31%), Gaps = 160/702 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMP 54 T ID ET S + ++ + ++ H ++ Sbjct: 318 KTFSIDTETTSLDPFS----------AKLVGVSISTNEGEAYYIPISHVSENNLTKEIVL 367 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 + LKE LE IV N F+ V ++ P T+V A L+ Sbjct: 368 KFLKEILECERYNIVGQNLKFDYKVFM-VNGIE-PQIPHFDTMVAAYLINPEERRYNLEE 425 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + LK KM +EL+ + + EY DV +T + Sbjct: 426 LA--LKYLGYKMISFEELV--------DNNMPLFGNDFSFISIEKAAEYSCEDVDITFRL 475 Query: 172 FKRLEPLSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + L + +EL+Y + + G DV L++ + E KL++++ Sbjct: 476 YSYLSKYIGEMKELFYNIEMPLINVLAQMELNGVYFDVDYLKELSKRYEEEMKKLEEKIF 535 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 ++ + +++ LF + L + T +T VL K A + Sbjct: 536 EISG-EQFNINSSKQVAEILFEKLKLPIVKKTATGRNSTNAEVLEELAKDYEIARLILEY 594 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + + ++++ ++N + + TGR S QNLP S +E Sbjct: 595 R-KFQKLKSTYVDSIPSSVNITTNRVHSSFHQTGTSTGRLSSSAPNLQNLPTRSEEGKE- 652 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398 +R V E +V AD + IE RVLA M+ ++ Sbjct: 653 ------------------------IRHAVKPQFENWYIVGADYSQIELRVLAHMSEDEKL 688 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AFE D++ T ++ FNV+ VT+D R IGK++ A+ G++ Sbjct: 689 LDAFENDYDIHTITASKIFNVSELMVTEDMRRIGKMINFAII--------------YGIS 734 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + +++ + + + V Sbjct: 735 PYGLSRRI------------------------------GLNVNETKKIIDNYFKYYQGVF 764 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E + ++ N + GR + Sbjct: 765 EFIKKTIDFAKK--------------------------NGFVKTLFGRKRFIPQLKLKN- 797 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632 ++ R VQ + DI+ M+ ++L VHDE+ Sbjct: 798 --KNLIQEGERIAINTP------VQGTAADIIKIAMVKVHNELKRNSLKTKLILQVHDEL 849 Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E P + + M + +PLK + YE + + Sbjct: 850 VFEVPFDELQIVKEIIKDKMENAVK--LKVPLKVDLYEGREW 889 >gi|56551123|ref|YP_161962.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4] gi|56542697|gb|AAV88851.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4] Length = 921 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 103/713 (14%), Positives = 204/713 (28%), Gaps = 175/713 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE--- 59 + +D ET + A ++ + + C H K Sbjct: 340 QVAVDTETDNLD----------ATQAQLVGVSLSTEAGKACYIPCGHGGHDLLDQKPDQM 389 Query: 60 -----------ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-- 106 LE+ + + N ++ VL I + + T++L+ Sbjct: 390 DLLLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRY---GISVQPFDDTMLLSYDLDAGRH 446 Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 + + + I+ + Y D Sbjct: 447 GHGMDELSLLY--------FDHQPISFKS----VCGTGKSAITFNHVPIPAATRYAAEDA 494 Query: 166 TVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 +T ++ L+P ++ L + + G VD H L+ + Sbjct: 495 DITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSRFAHDI 554 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271 ++L++E+ L ++L LF GL +++ T L Sbjct: 555 SRLEEEIYVLAGCR-FLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERLAAEGE 613 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + S+ + L+ +N + T L ++TGR S QN+P Sbjct: 614 AIASKILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLVGAQTGRLSSTDPNLQNIPI 673 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + E +R+ IA +G L+ AD + IE R+ A Sbjct: 674 RTEIGRE-------------------------IRNAFIAKKGHLLLSADYSQIELRLAAH 708 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +A E+ L+AF ED++ T + F V ++ RA K + A+ Y Sbjct: 709 VADEKALLQAFREKEDIHALTAKQLFGH----VDRESRARAKTINFAILY---------- 754 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ A ++ + + + + Sbjct: 755 ----GISAWGLAARLEIDRFS------------------------------AQEMIDRYF 780 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ + + + + P GR Sbjct: 781 ERFPAIRHYIDRTLDFVR--------------------------LHGYVETPFGRKTHLP 814 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGY---DI 624 + + + R+ +Q +S DI+ M+ KAG + Sbjct: 815 AIKSRKVTERQA---AERQAINAP------IQGMSADIIKRAMVRMEPALAKAGLSSVKM 865 Query: 625 VLTVHDEIVCETPDTDEFNAS-MLYHLMTSN--PSWAKGLPLKAEGYESKRYR 674 +L VHDE++ E P+ D A ++ +M P + L+ E + Sbjct: 866 LLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIVQLSVDLEVEIGTGTSWG 918 >gi|218247875|ref|YP_002373246.1| DNA polymerase I [Cyanothece sp. PCC 8801] gi|257060804|ref|YP_003138692.1| DNA polymerase I [Cyanothece sp. PCC 8802] gi|218168353|gb|ACK67090.1| DNA polymerase I [Cyanothece sp. PCC 8801] gi|256590970|gb|ACV01857.1| DNA polymerase I [Cyanothece sp. PCC 8802] Length = 972 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 111/700 (15%), Positives = 206/700 (29%), Gaps = 149/700 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVH-------DPVMPQVL 57 D ET S + ++ + + + H + Q L Sbjct: 387 DTETTSLEP----------RNAELVGIGCCWGEKSTDIAYIPTGHNKGNQLKKEAVLQAL 436 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115 K LE+ V N+ F+R + +++ TL+ + L + Sbjct: 437 KPILESDRYPKVFQNTKFDRLIF-YHQGINLK-GVVFDTLLASYVLHPEMSHNLSDLCYR 494 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 LS + KEL + K YC D T + +L Sbjct: 495 Y-LSGITSQSYKEL------------AIPKGKTIASLDIETVANYCGLDAYATFLLVSKL 541 Query: 176 EPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + EQ L + + D G +D L+Q ++ + ++Q+ Sbjct: 542 KQELKSFPSLEKLLLEVEQPLEPVLAAMEDIGIRIDTDYLQQLSQQLEQDLHIIEQQAYQ 601 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L LF + L+ + T+ +T L + P + + Sbjct: 602 EAG-EIFNLGSPKQLGEILFEKLELNRKKSRKTKTGYSTDHATLEKLQGDHPIIDHILDY 660 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ ++ L + D + T + TGR S QN+P + Sbjct: 661 R-TLSKLKSTYVDALPALVRPDTQRVHTNFNQTVTATGRLSSSNPNLQNIPIRTE----- 714 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 S +R I E LV AD + IE R+LA ++ E L Sbjct: 715 --------------------FSRKIRQAFIPQENWLLVSADYSQIELRILAHLSQEVVLL 754 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +A+ +D++ T F +T +R +GK + + Y GA+ F + A + Sbjct: 755 EAYRNNQDVHSVTAKLLF--DKETITPQERNLGKTINFGVIYGMGAQRFAREA-----GV 807 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + N + + ++ M++ Sbjct: 808 SAAEGKTFINKYRQRYAKVFDYLERMKKEAIADGFVTTI--------------------- 846 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 +RR + K + Sbjct: 847 --------------------LGRRRYFNFITESLQKLKGSDP---------EKINLEVLN 877 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCE 635 +N QL R +Q S DI+ M+ + ++L VHDE+V E Sbjct: 878 INYADAQLLRAAANAP------IQGSSADIIKIAMIKMQEILSHYQARLLLQVHDELVFE 931 Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 P + + M + + +PL E + + Sbjct: 932 IPLNEWEELQTKIKETMENAVT--LTVPLVVEIHSGNNWM 969 >gi|83951243|ref|ZP_00959976.1| DNA polymerase I [Roseovarius nubinhibens ISM] gi|83839142|gb|EAP78438.1| DNA polymerase I [Roseovarius nubinhibens ISM] Length = 933 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 94/711 (13%), Positives = 183/711 (25%), Gaps = 168/711 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51 + ID ET S ++ ++ + + H Sbjct: 347 YVAIDTETTSLNEM----------QAELVGISLAVEPGQACYIPLGHREGASDDLFGSDA 396 Query: 52 ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 + L+ LE+ V + N ++ + L + I T++++ + Sbjct: 397 LAEGQLPRDAVLSALRPVLEDAAVLKIGQNMKYDAKIFA---GLGLTIAPIDDTMLMSYA 453 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + A+ E + K L+ + + Sbjct: 454 LNSGIHNHGMDALSERY--LAHNPIPIKTLL----------GTGKSAVTFDKVPIDEAVK 501 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T ++ +P ++Q L + + G VD + ++ Sbjct: 502 YAAEDADITLRLWHMFKPQLHQKQVTTVYETLERPLVPVLARMERHGILVDRDVLSRMSN 561 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265 + L+ E+ L + ++L LF E L +T T VL Sbjct: 562 AFAQKMGGLEAEIHELAG-RSFNVGSPKQLGEILFDEMALEGGKKGKTGAYATGADVLED 620 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 +V + R S+ + L + ++ + T + TGR + Sbjct: 621 LATEHELPARVLDWRQ-LSKLKSTYTDALQDHIDPNTGRVHTSYVQTGASTGRLASTDPN 679 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S +R +A GK+LV D + IE Sbjct: 680 LQNIPVRSEEGRR-------------------------IREAFVADAGKRLVSLDYSQIE 714 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +AG +AF G D++ T + F V ++T D R K + + Y Sbjct: 715 LRILAHVAGIDALKQAFRDGLDIHAMTASEMFGVPLDEMTSDVRRRAKAINFGVIYGISG 774 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 L + + E + + E H G Sbjct: 775 -----FGLARNLRIPRAEAQGFIDRYFERFPGIRAYMDETVEFAKAHGYVQTLFGRRIHT 829 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 ++ A I Sbjct: 830 ---------PEIAAKGPRAGFAKRAAINAPI----------------------------- 851 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 T + R + D+ + ++ Sbjct: 852 --------------QGTAADIIRRAMIRMPEAI--------ADLPCKMLLQVH------- 882 Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673 DE++ E + + +M A +PL + + Sbjct: 883 ----DELLFEAEEDAVDAVITAAREVMEGAADPAVHLDVPLTVDAGSGMNW 929 >gi|217076341|ref|YP_002334057.1| DNA polymerase I [Thermosipho africanus TCF52B] gi|217036194|gb|ACJ74716.1| DNA polymerase I [Thermosipho africanus TCF52B] Length = 892 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 107/704 (15%), Positives = 203/704 (28%), Gaps = 162/704 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMP 54 T ID ET S + ++ + + H ++ Sbjct: 318 KTFSIDTETTSLDPF----------EAKLVGISISTMEGKAYYIPVSHFGAKNISKSLID 367 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 + LK+ L+ D IV N F+ + K+ + T++ A L+ Sbjct: 368 KFLKQILQEKDYNIVGQNLKFDYEIFKS-MGFSPNV-PHFDTMIAAYLLNPDEKRFNLEE 425 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + LK KM EL+ EY D VT I Sbjct: 426 LS--LKYLGYKMISFDELVNE-NVPLFGN-------DFSYVPLERAVEYSCEDADVTYRI 475 Query: 172 FKRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 F++L + E L + + G D L++ + + ++ Sbjct: 476 FRKLGRKIYENEMEKLFYEIEMPLIDVLSEMELNGVYFDEEYLKELSKKYQEKMDGIKEK 535 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + + + ++ LF + + T +T VL K A + Sbjct: 536 VFEIAG-ETFNLNSSTQVAYILFEKLNIAPYKKTATGKFSTNAEVLEELSKEHEIAKLLL 594 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R + + ++++ ++N T + TGR S QNLP S + Sbjct: 595 EYR-KYQKLKSTYIDSIPLSINRKTNRVHTTFHQTGTSTGRLSSSNPNLQNLPTRSEEGK 653 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQ 396 E +R V + ++ AD + IE RVLA ++ ++ Sbjct: 654 E-------------------------IRKAVRPQRQDWWILGADYSQIELRVLAHVSKDE 688 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 LKAF+ D++ T A+ F V+ V++ R A G Sbjct: 689 NLLKAFKDDLDIHTITAAKIFGVSEMFVSEQMRR--------------VGKMVNFAIIYG 734 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + + +++ + + + Sbjct: 735 VSPYGLSKRI------------------------------GLSVSETKKIIDNYFRYYKG 764 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E + + + GR + + Sbjct: 765 VFEYLKRMKDEARK--------------------------KGYVTTLFGRRRYIPQLRSK 798 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 ++ R +Q + DI+ M+N ++L VHD Sbjct: 799 N---GNRVQEGERIA------VNTPIQGTAADIIKIAMINIHNRLKKENLSSKMILQVHD 849 Query: 631 EIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 E+V E PD + + M + +PLK + Y K + Sbjct: 850 ELVFEVPDNELEFVKDIVKDEMENAVK--LDVPLKVDVYCGKEW 891 >gi|262277731|ref|ZP_06055524.1| DNA polymerase I [alpha proteobacterium HIMB114] gi|262224834|gb|EEY75293.1| DNA polymerase I [alpha proteobacterium HIMB114] Length = 925 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 99/710 (13%), Positives = 214/710 (30%), Gaps = 169/710 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 ID ET S + ++ + +++ H Sbjct: 342 YFAIDTETNSLNS----------QKADLVGISLAINENEAYYVPVGHKNKQDPNLKKQIK 391 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--- 106 + +VLK LE+ V V N ++ + I + + T++L+ S Sbjct: 392 IKELVKVLKPYLEDETVKKVGQNIKYDLKIFLKY---GIELKSFEDTMLLSYSLDAGVNR 448 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 L + + L K + Y D Sbjct: 449 HNLDLLAKTH------------LDHDNIKFKDVVGTGKSEVTFDEVLIDNAYRYACEDAD 496 Query: 167 VTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 VT +++ + KE+ L + + + G +D + L+ + Sbjct: 497 VTLKLYNLFKDRIVKEKCFQIYETLEIPLVDVLARMENNGIKIDQVILKKLSNSFSADLK 556 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQ 272 L++++ L+ + ++L L+ + + T+ T VL + Sbjct: 557 TLEKKIYKLSG-EEFNIASTKQLGDILYEKLKISGTKKTKKGNFATNVNVLEDLASKGNE 615 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 ++ + S+ ++L E ++ + + T L A+ TGR + QN+P Sbjct: 616 FPKLVLEWRQKSKLKNTYTDSLPEYIDKNTKRIHTSFLLAATSTGRLASADPNLQNIPIK 675 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 S+ + +RS ++ +G ++ AD + IE RVLA + Sbjct: 676 SKEGK-------------------------LIRSAFVSEKGSSIISADYSQIEMRVLAHV 710 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 A + KAF+ ED++ T ++ F ++ +D R K + Sbjct: 711 ADVKELKKAFKNNEDIHNITASQIFECDIKKINEDMRRKAKAINF--------------G 756 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ A + E+ ++ + Sbjct: 757 IIYGISSYGLAKQIS------------------------------VSNPEAEQFLFSYFK 786 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 K + + E + + N + R + + Sbjct: 787 KFPEIRDYMQETLEFCRK--------------------------NGFVQTMFNRKCHFPN 820 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVL 626 + + +T R +Q + DI+ M+N K +++ Sbjct: 821 INDKN---HTLKSFQERAAINAP------IQGAAADIIRFAMINIDKKILSKKIKSRLLV 871 Query: 627 TVHDEIVCETPD-TDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673 +HDE++ ET D + + + M + + +PL + +K + Sbjct: 872 QIHDELLLETKDMDLKKEIQKIKNEMENAIDGDYNFSVPLIVDANSAKNW 921 >gi|312129432|ref|YP_003996772.1| DNA polymerase i [Leadbetterella byssophila DSM 17132] gi|311905978|gb|ADQ16419.1| DNA polymerase I [Leadbetterella byssophila DSM 17132] Length = 933 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 102/705 (14%), Positives = 202/705 (28%), Gaps = 171/705 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLK 58 + D ET A D ++ +F + + K Sbjct: 362 EICFDTETT----------DIDALDAQIVGLSFAYRPREAFYIPFSPKFEEAKAVLIEFK 411 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 EN ++ VA N ++ T+L +++ T++ + + E Sbjct: 412 PLFENENIRKVAQNIKYDLTILATY-GVEVK-GEIYDTMLAHYILEPDQRHGMDYLAETY 469 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 S K +LI + EY D +T ++ L+ Sbjct: 470 --LSYKPIPISDLI----------GKGKKQLNMRDVPLEQIKEYAAEDADITLQLKHVLD 517 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L ++ + G +DV H L+ + + K +++ L Sbjct: 518 AQIKKTDQGRLLQEVELPLVHVLSDMERTGVKIDVEALHDLSNTLQKDLAKTQEDIFQLA 577 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L LF + T T T + +L + + ++ + R Sbjct: 578 GM-EFNVGSPKQLGEILFEHMKIDEKPKKTPTGQYATGEDILVNYEADHEIVRKILDFR- 635 Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 S+ ++ L ++ GR+ T A+ TGR S QN+P + E Sbjct: 636 ELSKLKSTYVDALPTLISKRTGRIHTTYNQAVAA-TGRLSSTNPNLQNIPIRTERGRE-- 692 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I E ++ AD + IE R++A +G++ L Sbjct: 693 -----------------------IRKAFIPGGEEFTILSADYSQIELRIMADFSGDESML 729 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ G D++ T ++ F V+ +V D R G++ Sbjct: 730 EAFDNGMDIHAATASKVFGVSLEEVNSDMRRKA--------------KMVNFGIIYGIS- 774 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + A+ + +V Sbjct: 775 -----------------------------AFGLAQRLGIPRGEAKNIIDAYFTQFPKVKS 805 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + + + GR RD+ + Sbjct: 806 YMDQTIEKARELE--------------------------YVETILGRRRYLRDINSRNQ- 838 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 T R +Q + D++ M+ ++L VHDE+V Sbjct: 839 --TNRGFAERNAINAP------IQGSAADMIKVAMIQIHDFMKKENLKSKMILQVHDELV 890 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKA----EGYESKRY 673 + ++ + + M + LPLK K + Sbjct: 891 FDAHHSEVEFLKEKIDYYMVNA------LPLKVKIETGIGIGKNW 929 >gi|282879100|ref|ZP_06287860.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310] gi|281298834|gb|EFA91243.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310] Length = 920 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 94/694 (13%), Positives = 196/694 (28%), Gaps = 147/694 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 L +D ET S + + ++ +F + + ++ Sbjct: 348 KILSLDTETTSTNPM----------EAELVGLSFAVEPKKAFYVPVPAKHEDAVNLVKIF 397 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K EN ++ V N ++ VL+ +++ T++ + + E Sbjct: 398 KPLYENEEIVKVGQNIKYDMEVLRNY-GIELK-GPMFDTMIAHYVLQPELRHNMDYMAEV 455 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + ++LI K R+ Y D +T ++ L Sbjct: 456 Y--LNYQTIHIEKLIGERGK----NQKNMRDLSPTDVYL-----YACEDADITLQLKNAL 504 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 EP E L + + G +D ++ L+ ++ L Sbjct: 505 EPKLKEAGVADLFYQMEMPLVNVLAEMEMNGVRIDTEALKETSENFTKRMLDLEHQIHEL 564 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + L + + R Sbjct: 565 AG-ESFNVSSPKQVGDILFGKLQIAEKPKKTKTGQFVTSEEELQKYAAGNEIVTLILDYR 623 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N T + TGR S QN+P +E Sbjct: 624 -GLKKLLGTYVDALPKLINPRTGHIHTSFNQTVTATGRLSSSDPNLQNIPVRGEDGKE-- 680 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R C I +G AD + IE RV+A ++G++ ++ Sbjct: 681 -----------------------IRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHMIE 717 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ G D++ T A+ + VT+D+R K + Y L ++ Sbjct: 718 AFQHGYDIHAATAAKIYGKDMKDVTRDERTKAKRANFGIIYGITV-----FGLAERLGID 772 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + ++ + E + F Sbjct: 773 RNEAKQLIDGYFTTFPQVYDYMEQAKATAREQGYVETFF--------------------- 811 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 +RR +P + + + + Sbjct: 812 --------------------HRRRYLPDINSRNATVRGFAERNA--------INAPIQGS 843 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 ++ Y EN +Q ++L VHDE+ + Sbjct: 844 AADIIKVAMIRIYKRFKREN-IQ------------------SKMILQVHDELNFSVLPEE 884 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + + +PL A+G K + Sbjct: 885 KEQVERIVMEEMQNA--YPLRVPLIADGGWGKNW 916 >gi|239993904|ref|ZP_04714428.1| DNA polymerase I [Alteromonas macleodii ATCC 27126] Length = 930 Score = 382 bits (981), Expect = e-103, Method: Composition-based stats. Identities = 105/703 (14%), Positives = 202/703 (28%), Gaps = 162/703 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + D ET S + D ++ +F ++ HD + Sbjct: 353 IAFDTETTSLNYM----------DAELVGVSFCIEEGEAAYVPVAHDYPDAPAQLSREFV 402 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110 LK LE+ V V + +++ VL ++ + T++ + + Sbjct: 403 LDALKPILESDTVIKVGQHIKYDKNVLANY-DITLNGIG-FDTMLESYVLNSTAQRHDMD 460 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 ++ A G + I E + ++ + G Y D +T Sbjct: 461 SLALAY--------LGHKTIHF----EEIAGKGAKQLTFNQISLEEAGPYAAEDADITLR 508 Query: 171 I----FKRLEPLSSKEQ-------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + +L+ + + L + + G +D +Q + +L+ Sbjct: 509 LHNAIWTKLKEIPELKNLLIDVEVPLACVLSRMEQEGVLIDSQRLRQQSQDLATRIAELE 568 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 E+ + ++L+ LF + L + T +T + VL P + Sbjct: 569 SEVHEEAG-EPFNLGSTKQLQHVLFEKMSLPIIKKTPKGAPSTSEDVLQELALEYPLPKK 627 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R ++ + L + +N T + TGR S QN+P + Sbjct: 628 IMEYR-GLTKLKNTYTDKLPKMINHRTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEE 686 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 VR + EG K V AD + IE R++A ++G+ Sbjct: 687 GRR-------------------------VRQAFVPREGNKFVAADYSQIELRIMAHLSGD 721 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF G+D++ T A F V +VT +QR K + L Y A + Sbjct: 722 KGLLDAFAHGKDIHKATAAEVFGVPLDEVTTEQRRSAKAINFGLIYGMSA-----FGLSK 776 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 LN+ + E + + +E+ E + G R Sbjct: 777 QLNIPRNEAQKYMDLYFERYPGVLEYMDSTRESAKEKGYVETVFGR---------RLYLP 827 Query: 516 RVS----ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + +A G A K + + + + + + Sbjct: 828 DIKASNGARRKGAERAAINAPMQGTAADIIKMAMIKVDDWIRKNASDDVTM--------- 878 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 MM E Sbjct: 879 ------------------------------------------MMQVHD-----------E 885 Query: 632 IVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E + S + LM S + +PL E + + Sbjct: 886 LVFEIREDKVETYVSTITALMESAAT--LNVPLVVEAGVGENW 926 >gi|260220821|emb|CBA28770.1| DNA polymerase I [Curvibacter putative symbiont of Hydra magnipapillata] Length = 542 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 98/651 (15%), Positives = 183/651 (28%), Gaps = 147/651 (22%) Query: 49 HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLP 106 V+ LK LEN + + ++R V +++ + T++ + P Sbjct: 13 DRDVVLAKLKPWLENPQALKLVQHIKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEADKP 70 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 L ++ E L E + EY D Sbjct: 71 HGLASLAERH------------LGRSGISFEDLCGKGANQISFDQVDIAKAAEYACEDSD 118 Query: 167 VTREIFKRLEPLSSKEQE----------LWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 T ++ L P + I G +D + + Sbjct: 119 QTLDVHLVLWPQIEANDKLKFIYELEIASSEALYRIERNGVLIDAPTLAAQSHELGQRIL 178 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQ 272 +L+ E + + ++L F + G+ + T +T + VL + P Sbjct: 179 QLETEAYEIAGQP-FNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPL 237 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ +R ++ + L + GR+ A TGR S QN+P Sbjct: 238 PAKLLEHR-SLAKLKGTYTDKLAQLALPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPI 295 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + VR +A+ G + AD + IE R++A Sbjct: 296 RTAEGRR-------------------------VREAFVAAPGCVIASADYSQIELRIMAH 330 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ + L+AF G D++ T A F V QV+ +QR KV+ Sbjct: 331 ISDDPALLRAFHDGLDVHRATAAEVFGVPVDQVSSEQRRYAKVIN--------------F 376 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ A TA + + + Sbjct: 377 GLIYGMS------------------------------AFGLARNLGIDNTAAKNYIQRYF 406 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 +++ V + ++ + GR L Sbjct: 407 ERYPGVKAYMESTRELAKR--------------------------QGYVETVFGRRLQLA 440 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIV 625 + N + L R +Q + D++ M+ ++ Sbjct: 441 GIKNAKGAQ---LAGLERAAINAP------MQGTAADLIKLSMVKVQQVLDAQNKSTKMI 491 Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + VHDE+V E P + + LM +PL AE + K Sbjct: 492 MQVHDELVFEVPQDEVDWVRTEIPSLMAGVAE--LKVPLLAEVGVGPNWDK 540 >gi|258543756|ref|ZP_05703990.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826] gi|258520992|gb|EEV89851.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826] Length = 881 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 102/696 (14%), Positives = 198/696 (28%), Gaps = 129/696 (18%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVL 57 ID ET S + ++ + H L Sbjct: 284 AIDTETDSLDYMR----------ANLVGISVAPAPGEAYYLPLAHQLSANLPYAETLTRL 333 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 K LE + + ++R + +++ + T++++ + L + + Sbjct: 334 KPLLEASAPPKSGQHHKYDRHIFARA-GIELRGIK-DDTMLMSYTIDSTATRHNLDDLAD 391 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L + E + + Y D +T + Sbjct: 392 YY------------LNHQTTTFEDIAGKGAKQLTFDQIPLETATAYACEDADITLRLKNH 439 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L L I G +D A + + + L+ Sbjct: 440 LAPKLAAVPQLDALYRELEMPLAELLYKIEATGVRIDPAALAAQSAEISGQLAALEHAAH 499 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTP-QAIQVFN 278 +L + ++L+ L+ + GL +T + VL+ + + ++ Sbjct: 500 TLAGSP-FNLGSPKQLQEILYDQLGLPVLRKTPKGQPSTNEEVLAELAESHGAELPRLIL 558 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 ++ + L E +N T + TGR S QN+P S + Sbjct: 559 EHRGLAKLKTTYTDRLPELINPHTGRIHTSYHQAVTSTGRLSSSDPNLQNIPVRSEAGRR 618 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA +G +++ AD + IE R++A ++ + Sbjct: 619 -------------------------IRRAFIAEDGWQILAADYSQIELRIMAHLSADPGL 653 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A F VAP V+++QR K + L Y A LN Sbjct: 654 LAAFARGDDIHRATAAEIFGVAPEAVSREQRRDAKAINFGLIYGMSA-----FGLARQLN 708 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + ++ + ++ +E + + +G K+ Sbjct: 709 IPRGQAADYIDTYFARYPKVRDYMDATREAAHKQGYVETLLGR--RLYLPDINSKNP--- 763 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + G A KR + + R L + Sbjct: 764 QRRQASERLAINAPMQGSAADIIKRAMLAID----------------RELELSPLPGAGG 807 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET-P 637 NT A + + +++ VHDE+V E P Sbjct: 808 THNTNPLPRE---------------ATAA---------KNRDDLRLIMQVHDELVFEIRP 843 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + LM + + +PL E + Sbjct: 844 QAAAELTPRIVALMENAMT--LSVPLIVETGLGANW 877 >gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823] gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823] Length = 951 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 100/702 (14%), Positives = 208/702 (29%), Gaps = 162/702 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 ++ D ET L ++ +F + + D + Sbjct: 378 KSVCFDTETTDINAL----------HADLVGMSFSYKEREAYYVAVPKDKKEIQAIVDEF 427 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K E+ + +AHN ++ VL + T++ + + E Sbjct: 428 KPFFEHKSIEKIAHNMKYDIQVLHRY-GVQFA-GPLFDTMIAHYLIQPESKQGMDFLAEY 485 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + LI + +Y D +T ++ + Sbjct: 486 Y--LNYTPVSIETLIGK---------KGKGQGNMGDLQPEAISDYACEDADITFQLKQLF 534 Query: 176 EPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P E L + + + G +D+ ++ + E L++ ++ L Sbjct: 535 APQIEKDHLKSLFYDMEMPLVSVLAEMEEEGVAIDIPHLEAYSKQLAEETEGLEKRIKEL 594 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + ++L LF + + T+T T + +L +K + + R Sbjct: 595 AGMD-FNVDSPKQLGDVLFEHMKISSKAKKTKTGQYATSEDILQQHKNDHEIIPCILDYR 653 Query: 281 MRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L + DGR+ + + TGR S QN+P S +E Sbjct: 654 Q-MKKLKSTYVDPLPTMKDPVDGRVHTSYMQ-TVTATGRLSSNNPNLQNIPIRSERGKE- 710 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA + +L+ AD + IE R++A +A + Sbjct: 711 ------------------------IRRAFIARSKDFQLMSADYSQIELRIIAALADDTNM 746 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++AF+ D++ T A+ F+V VTKDQR A G + Sbjct: 747 IQAFKDKVDIHRATAAKVFHVELDDVTKDQR--------------SAAKAVNFGIIYGQS 792 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + T +++ ++ ++S + Sbjct: 793 ------------------------------AFGLSQNLGISRTEAKQIIDSYFAQYSTIK 822 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 A + ENG + R D+ + + Sbjct: 823 TYM---DNAVKDARENGYVETIMQ-----------------------RRRYLPDINSANA 856 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632 + + +Q + DI+ M+ KA ++L VHDE+ Sbjct: 857 VVRGFAERN---------AVNAPIQGSAADIVKLAMVAVDKAMKKAKVKSKMILQVHDEL 907 Query: 633 VCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 V + + ++ L M + +P++ E + + Sbjct: 908 VFDVHNDEQEVMKKLVKEAMENAIQLV--VPMEVEMELANNW 947 >gi|48697222|ref|YP_024952.1| putative DNA polymerase protein [Burkholderia phage BcepC6B] gi|47779028|gb|AAT38391.1| putative DNA polymerase protein [Burkholderia phage BcepC6B] Length = 681 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 224/684 (32%), Positives = 333/684 (48%), Gaps = 51/684 (7%) Query: 35 FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS-YFERTVLKACFNL---DIPI 90 + DD PV WD MP L EA+ + N F+R VLK +P Sbjct: 5 WAIDDGPVGTWDVTTGAPMPVELDEAI-DAADEYWWQNGGMFDRVVLKHAAPEIYARMPE 63 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NK 147 H+W T+V A ++GLP L + E + + K +EG +LI FCK R + Sbjct: 64 HKWRDTMVQAYAHGLPGKLALLCEIFNIPTDQAKDKEGAQLIQLFCKPRPANSGLRRATR 123 Query: 148 PNHREAWRLFGEYCKGDVTVTREIF----KRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 H E W F Y D+T R + + P + E LW+ DQ IN RG +DV L Sbjct: 124 ETHPEQWAKFLTYAGADITAERAVHKAMPRWNYPNNVTELALWHQDQRINMRGMQMDVEL 183 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263 A + +D + +L LT G V+ + +KL L E + L D+ ++T +R + Sbjct: 184 AEAAVRAIDRAQKELAARTVELTDGEVAKATQRDKLLAHLLAEYEVDLPDMKKSTLERRI 243 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + L ++ R+ A+ ++ K TL+ +++DGRLRG +QF GA RTGR + + Sbjct: 244 ND-PDLPDALRELLAIRLEATMTSSSKYKTLLRGVSADGRLRGLMQFCGAQRTGRVAHRL 302 Query: 324 FPPQNLPRPS------------------RSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 F P N+PRP + EL + + + + ++ VR Sbjct: 303 FQPGNMPRPDVGLMVGELGVAKFSDGDAERYTELGIGALKTGCADLVFENVIGLTANVVR 362 Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE-----DLYVTTYARSFNVA 420 ++A +GK+L V+DL+ IE R AW+AGE+WKL+AF + DLY YAR+F VA Sbjct: 363 GTIVAPDGKRLYVSDLSNIEGRDAAWLAGEKWKLQAFRDFDAGIGADLYKLAYARAFGVA 422 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT---NSAPEEWED 477 V K R +GKVMELAL Y+GG AF T ++L++ V PE + Sbjct: 423 VEAVDKYMRQLGKVMELALAYEGGVGAFVTFTMTYKMDLDSIRAAVFAALDTVDPEIVRE 482 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 A W + + AC+ +K+ WR+ H + S W EL A I + Sbjct: 483 ARGMWEWAVKKRRTLGLPQDVFI-ACDILKRLWRRAHPQTSSYWPELRDAAILAISSPGK 541 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY----RDVGNNRSYL--NTTTRQLTREY 591 + +R V +++D L + LPS R L Y SY+ N TR+ R Sbjct: 542 TVHARR-----VILRRDGEWLRVQLPSKRQLCYLAPRVSDDGEISYMGVNQYTRKWQRTK 596 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM 651 TYGGK+ EN+ QAV+RD+L AGYDIVL++HDE++ E PD D+++A L L+ Sbjct: 597 TYGGKIFENLCQAVARDVLFYNAPAVEAAGYDIVLSIHDELITEAPDADDYSADELSSLI 656 Query: 652 TSNPSWAKGLPLKAEGYESKRYRK 675 + P+WA+G+PL A G+ + RY+K Sbjct: 657 ATAPAWAEGMPLAAAGFSAYRYKK 680 >gi|209523939|ref|ZP_03272491.1| DNA polymerase I [Arthrospira maxima CS-328] gi|209495611|gb|EDZ95914.1| DNA polymerase I [Arthrospira maxima CS-328] Length = 945 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 109/707 (15%), Positives = 202/707 (28%), Gaps = 166/707 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD-------PV 52 + D ET S D ++ + + H Sbjct: 368 KPVAWDTETTSLEP----------RDANLVGIGCCWGSELSDLAYIPLNHTQGEMLNIEE 417 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALK 110 + L+ LE+ + N+ F+R +L + + T++ + L Sbjct: 418 VLPALRPILESENYPKTLQNAKFDRLIL-RSQGITLK-GVVFDTMLASYVINPESSHNLT 475 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + L +++ L + K YC DV T + Sbjct: 476 DLSLRY------------LPDLGIVAQSYSQLVPKGKTIADLDINTVANYCGLDVFTTFQ 523 Query: 171 IFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 I ++++ + EQ L + + +G +D + L++ + L+ Sbjct: 524 ITQKMQDILKDVPPLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSKQLGETLESLE 583 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAI 274 + G V + ++L LF L + T+ +T VL K P Sbjct: 584 K-ASHQAAGEVFNLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKHDHPVIN 642 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + R S+ ++ L E + SD GR+ + TGR S QN+P + Sbjct: 643 YILEYR-TLSKLKSTYVDALPELVRSDTGRIHTDFNQAI-TSTGRLSSSHPNLQNIPIRT 700 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 S +R I G LV AD + IE R+LA ++ Sbjct: 701 E-------------------------FSRQIRKAFIPESGWLLVSADYSQIELRILAHLS 735 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 E+ ++A+ T +D++ T F+ Sbjct: 736 QEKMLIEAYNTNQDVHSLTAQLLFDKD--------------------------------- 762 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + NF A E TA ++ + + Sbjct: 763 -------------EITADERRLGKIINFGVIYGMGSQRFAREVGVSATAGKQFIDRFNSQ 809 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V E A + GR + + Sbjct: 810 YPGVFEYLESQKLAAIN--------------------------QGYVETILGRRRYFESL 843 Query: 574 GN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTV 628 +R LN Q+ R +Q S DI+ M+ + ++L V Sbjct: 844 KGRDRDRLNYQDEQMLRAAANAP------IQGSSADIIKIAMIKLAEILKNYQARLLLQV 897 Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 HDE+V E P ++ + M + +PL + + + Sbjct: 898 HDELVFEVPLSEWEELQHQIKSTMENC--LFLSVPLVVDIHAGTNWM 942 >gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42] gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CFN 42] Length = 999 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 105/717 (14%), Positives = 199/717 (27%), Gaps = 169/717 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---------PVELWDCVHD---- 50 + D ET S A ++ FA D+ H Sbjct: 401 IAFDTETTSLD----------AMQAELVGFAMAIADNVADPTGTKIRAAYVPLAHKDGVG 450 Query: 51 --------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 LK LE+ V VA N ++ ++K + + T Sbjct: 451 DLLGGGLAENQIPMRDALPRLKALLEDESVLKVAQNLKYDYLLMKRY---GVETKSFDDT 507 Query: 97 LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 ++++ + + E G I + N Sbjct: 508 MLISYVLDAGTGAHGMDPLSEKF--------LGHTPIPY----KDVAGSGKANITFDLVD 555 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVAL 203 Y D VT ++ L+P E+ L + + RG VD + Sbjct: 556 IDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQI 615 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTC 259 L+ + +L+ E+ +L + ++L LF + GL T+ +T Sbjct: 616 LSRLSGELAQGAARLEDEIYTLAG-ERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTS 674 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + + + ++ + L ++ + R T L ++ TGR Sbjct: 675 ASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETRRVHTSYSLASTTTGRL 734 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+P + + +R+ I++ G KL+ A Sbjct: 735 SSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHKLISA 769 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA +A KAFE G D++ T + F V + + R K + + Sbjct: 770 DYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGI 829 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y A L++ E + ++ + + + Sbjct: 830 IYGISA-----FGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF 884 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 G R + V +A G A +R + + + Sbjct: 885 GRRINYP--EIRSSNPSVRAFN---ERAAINAPIQGSAADVIRRAMIKMEPALAEAGL-- 937 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 R ++ Sbjct: 938 ---------------------------AERVRM---------------------LLQVH- 948 Query: 620 AGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 DE++ E + E ++ +M + P+ +PLK + + + Sbjct: 949 ----------DELIFEVEDEDVEKAMPIIVSVMENATMPALEMRVPLKVDARAATNW 995 >gi|16331949|ref|NP_442677.1| DNA polymerase I [Synechocystis sp. PCC 6803] gi|6225285|sp|Q55971|DPO1_SYNY3 RecName: Full=DNA polymerase I; Short=POL I gi|1006595|dbj|BAA10748.1| DNA polymerase I [Synechocystis sp. PCC 6803] Length = 986 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 114/701 (16%), Positives = 213/701 (30%), Gaps = 151/701 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVH--DPV-----MPQVL 57 D ET S L ++ + P V H + +L Sbjct: 401 DTETDSLDPLV----------ANLVGIGCAWGQEPNQVAYIPLKHHQGEQLSLGIIKDLL 450 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115 E L N V N+ F+R VL +++ + T++ + L + Sbjct: 451 GEILGNAIYPKVLQNAKFDRRVLAHH-GIEL-GGVVLDTMLASYVLQPEETHNLTDLCRR 508 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L + K+L +++ G+YC D T + +L Sbjct: 509 YNLGLVAL-SYKDL------------GLKKDQTIADLPLETAGQYCGLDCYATYLLASKL 555 Query: 176 EPLSSKEQELWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + + EL + + + DRG +D TL+Q + ++ Sbjct: 556 QKELDQYPELKEILKEIEQPLEKILAAMEDRGIRIDCDYLQTLSQQLAENLLTIETAAYE 615 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNN 279 + ++L T LF + GL + T+ +T L + P + + Sbjct: 616 AAG-ESFNLSSPKQLGTILFDKLGLDRKKSRKTKTGYSTDHATLEKLQGDHPIIDAILEH 674 Query: 280 RMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ ++ L E +N R+ + TGR S QN+P S Sbjct: 675 R-TLAKLKSTYVDALPELVNGQTQRIHTDFNQAV-TSTGRLSSSNPNLQNIPIRS----- 727 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 S +R + + LV AD + IE R+LA ++ E Sbjct: 728 --------------------DFSRQIRRAFLPQKDWLLVSADYSQIELRILAHLSQEPVL 767 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+A+ +D++ T F +T +R +GK + + Y GA Q+ A TG++ Sbjct: 768 LQAYGDRQDVHGVTAKLLFGK--EDITPAERNLGKTINFGVIYGMGA---QRFARETGIS 822 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + ++ M+ + Sbjct: 823 A--VEGREFIDRYHRTYAQVFDYLETMKLEAIAKGYVTTIV------------------- 861 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 +RR V + + ++ Sbjct: 862 ----------------------GRRRYFNFVTEALRQLRGKTVT---------ELDLVDV 890 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634 +N QL R +Q S DI+ M+ K ++L VHDE++ Sbjct: 891 KMNYNDAQLLRSAANAP------IQGSSADIIKIAMVKLAKLLESYQTRMLLQVHDELIF 944 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E P + + ++ + M + +PL E + + Sbjct: 945 EMPPEEWEELAPLIQNTMEQALT--LSVPLVVEMHRGSNWM 983 >gi|13472868|ref|NP_104435.1| DNA polymerase I [Mesorhizobium loti MAFF303099] gi|14023615|dbj|BAB50221.1| DNA polymerase I [Mesorhizobium loti MAFF303099] Length = 1003 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 105/682 (15%), Positives = 200/682 (29%), Gaps = 145/682 (21%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDP------------------VMPQVLKEALENTDVTI 68 +I A H VLK LE+ V Sbjct: 428 QAELIGMAIATAPGRAGYIPFAHKSGNGDLLGGGALENQIPLREALAVLKPLLEDRSVLK 487 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 +A N ++ ++ I + + T++++ G ++ E K Sbjct: 488 IAQNLKYDLVIMSRY---GIDVAPFDDTMLISYVLDA-------GTPHGHGMDQLAE-KW 536 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--------- 179 L + + + + + D VT ++ L+P Sbjct: 537 LGHTPLQLKDVTGSGKSSVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAAKGLVSVY 596 Query: 180 -SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 E+ L + + RG VD + L+ + +L++E+ L + + ++ Sbjct: 597 ERLERPLVPVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQLIGERI-NIGSPKQ 655 Query: 239 LKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 L LF GL T+ +T ++L + + + + ++ + L Sbjct: 656 LGDILFGRMGLPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTYTDAL 715 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ D R T L A+ TGR S QN+P + + Sbjct: 716 PGFIHPDTRRVHTSYALAATTTGRLSSSDPNLQNIPVRTAEGRK---------------- 759 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R+ IA +G +LV AD + IE RVLA +A +AF G D++ T + Sbjct: 760 ---------IRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHAITAS 810 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 FNV + + R K + + Y A L++ E Sbjct: 811 EMFNVPVEGMPSEVRRRAKAINFGIIYGISA-----FGLANQLSIPREEASNYIKKYFER 865 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + ++ + EH + G R + + +A Sbjct: 866 FPGIRDYIEETKAYAREHGFVETIFGRRIHYP--DIRSSNPSIRAFN---ERASINARLQ 920 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 G A +R + L R Sbjct: 921 GTAADIIRR-----------------------------------AMVRMEEALDRAKL-- 943 Query: 595 GKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTS 653 +R M+ L VHDE++ ET + + + +M + Sbjct: 944 ----------SAR------ML----------LQVHDELIFETVEAEVEATIPVVRHVMEN 977 Query: 654 N--PSWAKGLPLKAEGYESKRY 673 P+ + +PL + + + Sbjct: 978 AAMPAVSMSVPLHVDARAANNW 999 >gi|332967940|gb|EGK07028.1| DNA-directed DNA polymerase I [Kingella kingae ATCC 23330] Length = 925 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 100/702 (14%), Positives = 199/702 (28%), Gaps = 162/702 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMPQ 55 + +D ET S + ++ + H + Sbjct: 350 IGLDTETTSREPM----------QAQLVGISVALAAGEAFYIPVAHRFADAQLDWATVKS 399 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVG 113 L+ LE+ + + N +++ + K ++D+ ++ + L + Sbjct: 400 SLQPFLESESLGKIGQNLKYDQHIFKNQ-DIDLKGI-VGDAMLASYIVESHLTHNLDDLA 457 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 G E I+ E+ + + +Y D I + Sbjct: 458 ARW--------LGLETISY----ESLCGKGAKEISFADVDVQAATQYACQDADFALRIEQ 505 Query: 174 RLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L E + + + G +D A + + E +L+Q+ Sbjct: 506 HLRTQMDAAQLALYQQMELPVAQVLFEMERAGVQIDRAELAQQSATLGAELLQLEQQAYE 565 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTE----TTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+ LF + G+ + T +T + VL P + Sbjct: 566 LAGQP-FNLNSPKQLQEILFDKLGIPTKGVKKTAKGGLSTDESVLEKLADDYPLPKIILQ 624 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ + L E + T + TGR + QN+P + Sbjct: 625 TR-SLSKLKSTYTDKLAEMILPQTGRVHTNYAQAVAITGRLASNNPNLQNIPIRTEQGRR 683 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 VR A + +V AD + IE R++A ++G+ Sbjct: 684 -------------------------VRRAFTAPQNCVIVSADYSQIELRIMAHLSGDTTL 718 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 AF ED++ T A F +AP +T +QR K + G++ Sbjct: 719 QAAFHNNEDVHRRTAAEVFGMAPEHITSEQRRYAKTIN--------------FGLIYGMS 764 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + ++ + + + +++ V+ Sbjct: 765 EYGLAKSLGIDAMS------------------------------AKMFIQRYFARYTGVA 794 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + +Q + GR L D+ + Sbjct: 795 DYMQRTKEQAQQ--------------------------LGYVETLFGRRLYLPDIHAKNA 828 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632 T R +Q + D++ M++ +V+ VHDE+ Sbjct: 829 M---TRAGAERAAINAP------MQGTASDLIKRAMISVQDFLRQSSLHSRLVMQVHDEL 879 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E D++ L LM +PL AE + Sbjct: 880 VLEVHDSELALIREKLPELMAQVGVGVLNVPLLAEVGVGANW 921 >gi|332298700|ref|YP_004440622.1| DNA polymerase I [Treponema brennaborense DSM 12168] gi|332181803|gb|AEE17491.1| DNA polymerase I [Treponema brennaborense DSM 12168] Length = 926 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 113/704 (16%), Positives = 211/704 (29%), Gaps = 169/704 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-------- 56 D ET S + ++ F+ + Sbjct: 355 AFDCETDSLDRI----------HTRIVGFSLSRRAGTGIYVPLSVPDALLTQTLIEKQDA 404 Query: 57 ---LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110 L+ T+ HN F+ VL L P R T+V A +L+ Sbjct: 405 FVQLERLFSVPACTLAMHNGKFDYEVL-RSNGLAEPRCRIADTMVAAWLLDPDRSAYSLE 463 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A+ + G E I Y D +T + Sbjct: 464 ALAA--------DKLGLETIPYTDVVPKGS-------TFADIPLEQAVPYAAEDADLTWQ 508 Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +++ P + E + + + G ++ + + + + E ++ + Sbjct: 509 LYRLFLPRLAAAKLGDLFWNLEMPVLPILAEMELDGIHIEKSELISYGEELTAEIERIRR 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277 E+ L + ++L+ LF E L T+ +T VL + L P ++ Sbjct: 569 EIYELVGH-EFNVASTKQLQDVLFEERKLPPGKKTKTGYSTDTGVLETLAALDPVPRKIL 627 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + R++ ++ ++TL ++ + R+ + G + TGR S QN+P Sbjct: 628 DYRLK-TKLFSSYVDTLPLMVDGNDRIHTSFIQTG-TATGRLSSREPNLQNIPVRDEDGR 685 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R A G +L+ AD + IE +LA ++G+ Sbjct: 686 R-------------------------IRLAFTAEPGCQLISADYSQIELVILAHLSGDPN 720 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 AF G D++ T A F V P VT D R K + G+ Sbjct: 721 LCAAFSGGTDVHRATAALIFGVQPDAVTPDMRRTAKTINF--------------GVMYGM 766 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A T +A+ + ++ V Sbjct: 767 SAFRLAGA------------------------------LGIPRTQAAEFIEAYFKTYAGV 796 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 NE+ A +Q + + GR R + ++ Sbjct: 797 RNFMNEMVNAAQQ--------------------------SGFVETIFGRRRYIRAINSSS 830 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631 + R +Q + DI+ + M++ A ++L VHDE Sbjct: 831 KIEKS---GAERVA------VNTPIQGSAADIVKKAMIDVAAALKKTGSPARLLLQVHDE 881 Query: 632 IVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++ E P ++ AS++ M + S +PLK R+ Sbjct: 882 LILECPQESAAETASLIKQTMENVVS--LRVPLKVSVEIGPRWG 923 >gi|284053371|ref|ZP_06383581.1| DNA polymerase I [Arthrospira platensis str. Paraca] Length = 750 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 110/707 (15%), Positives = 202/707 (28%), Gaps = 166/707 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD-------PV 52 + D ET S D ++ + + H Sbjct: 173 KPVAWDTETTSLEP----------RDANLVGIGCCWGSELSDLAYIPLNHTQGEMLNIEQ 222 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALK 110 + + L+ LE+ + N+ F+R +L + + T++ + L Sbjct: 223 VLEALRPILESEEYPKTLQNAKFDRLIL-RSQGITLK-GVVFDTMLASYIINPESSHNLT 280 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + L +++ L + K YC DV T + Sbjct: 281 DLSLRY------------LPDLGIVAQSYSQLVPKGKTIADLDINTVANYCGLDVFTTFQ 328 Query: 171 IFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 I ++++ + EQ L + + +G +D + L+Q + L+ Sbjct: 329 ITQKMQDILKDLPRLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSQQLGETLDNLE 388 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAI 274 + V + ++L LF L + T+ +T VL K P Sbjct: 389 KTSHQAAG-EVFNLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKHDHPVIN 447 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + R S+ ++ L E + SD GR+ + TGR S QN+P + Sbjct: 448 SILEYR-TLSKLKSTYVDALPELVRSDTGRIHTDFNQAI-TSTGRLSSSHPNLQNIPIRT 505 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 S +R I G LV AD + IE R+LA ++ Sbjct: 506 E-------------------------FSRQIRKAFIPESGWLLVSADYSQIELRILAHLS 540 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 E+ ++A+ T +D++ T F+ Sbjct: 541 QEKVLIEAYNTNQDVHSLTAKLLFDRD--------------------------------- 567 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ NF A E TA ++ + + Sbjct: 568 --GITPEE-----------RRLGKIINFGVIYGMGAQRFAREVGVSATAGKQFIDRFNSQ 614 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V E A + GR + + Sbjct: 615 YPGVFEYLESQKLAAIN--------------------------QGYVETILGRRRYFESL 648 Query: 574 GN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTV 628 +R LN Q+ R +Q S DI+ M+ + ++L V Sbjct: 649 KGRDRDRLNYQDEQMLRAAANAP------IQGSSADIIKIAMIKLAEILKNYQARLLLQV 702 Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 HDE+V E P ++ + M + +PL + + + Sbjct: 703 HDELVFEVPLSEWEELEYQIKSTMENC--LFLSVPLVVDIHAGTNWM 747 >gi|307150628|ref|YP_003886012.1| DNA polymerase I [Cyanothece sp. PCC 7822] gi|306980856|gb|ADN12737.1| DNA polymerase I [Cyanothece sp. PCC 7822] Length = 966 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 106/701 (15%), Positives = 209/701 (29%), Gaps = 151/701 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHDP-------VMPQVL 57 D ET S + + ++ + V H + L Sbjct: 381 DTETTSLDPI----------EATLVGIGCCWGHQSTDVAYIPLNHTEGEQLPQTEVLAAL 430 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115 + LE+ N+ F+R VL + + T++ + L + Sbjct: 431 RSILESDQYPKAFQNTKFDRIVLL-HQGIQLA-GVVFDTMLASYVLRPEDSHKLSDLCHR 488 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L + K K+L + + YC D T ++ +L Sbjct: 489 Y-LENIKSLNYKDL------------EIPKTQTIANLDISRVAHYCGMDAYATFKLVPKL 535 Query: 176 EPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 K +L+ + + + G +D +Q ++ + +++ Sbjct: 536 LAELEKAPDLYNLLIKVEQPLEPVLAEMENTGVRIDSQYLKAFSQKLEQDLAIFEKKAYE 595 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + ++L LF + L +T L + + + Sbjct: 596 AAG-ESFNLGSPKQLSYILFDKLKLSKSKSRKIKTGYSTDHATLEKLQGEDRIIDYILEH 654 Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ ++ L ++ GR+ + TGR S QN+P + Sbjct: 655 R-TLAKLKSTYVDALPALVHPKTGRVHTDFNQTVTT-TGRLSSSNPNLQNIPIKTE---- 708 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 S +R I EG LV AD + IE R+LA + E Sbjct: 709 ---------------------FSRQIRQAFIPEEGWLLVSADYSQIELRILAHLTQEPLL 747 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++A++ +D++ T F A +T ++R+IGK + + Y GA Q+ A GL+ Sbjct: 748 VEAYQNYQDVHRVTAQLLF--DKANITSEERSIGKTINFGVIYGMGA---QRFARAFGLS 802 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + +++ + +++ +G + + + Sbjct: 803 VQEGK--EFIEKYHQKYARVFEYLERVKKEAIAKGFVTTILGR------RRYFE------ 848 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + N L P ++ + Sbjct: 849 -------------------------------FFDDKLNRLRGEKP-------ENLDLKKL 870 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634 LN + QL R +Q S DI+ M+ + ++L VHDE+V Sbjct: 871 ELNFSDAQLLRAAANAP------IQGSSADIIKIAMVQLQEILQQYQARLLLQVHDELVF 924 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E P + + + M + +PL E K + Sbjct: 925 EVPPHEWEELEVKIKNTMENAV--NLTVPLVVEIRSGKNWM 963 >gi|51244939|ref|YP_064823.1| DNA polymerase I [Desulfotalea psychrophila LSv54] gi|50875976|emb|CAG35816.1| probable DNA polymerase I [Desulfotalea psychrophila LSv54] Length = 889 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 111/698 (15%), Positives = 197/698 (28%), Gaps = 170/698 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------ 51 + ID ET S A ++ + + H Sbjct: 316 IVIDTETTSLD----------ARTAGLVGISLCAELDRAWYIPLAHIEATGTPVPGQLPI 365 Query: 52 -VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSA 108 + VL+ L D+ V HN ++ TVLK ++I T+V A G Sbjct: 366 SEVMAVLEPLLTCADILKVGHNLKYDWTVLKMQTGVEI--FPLADTMVAAHLLEKGRTLK 423 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 L + + L R A + Y DV Sbjct: 424 LDDLCAEIGLE-------------LTSFAEVVAEDKRADAFAYVALKEACHYSCEDVYGA 470 Query: 169 REIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ E + + + G C+D + L + + +L Sbjct: 471 LSLWQDFGEKLSDKALDGLFYDVEMPIIPVLAKMEIGGVCLDSTVLVELAAQFEEQIGEL 530 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQ 275 + + ++L LF E GL T+ +T +V+ P Sbjct: 531 AATIYQEVGH-EFNISSPKQLGVILFEELGLPHGRKTKTGFSTDVKVMEKLASQHPVPAL 589 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + R ++ ++ L+ N + GR+ + + TGR S QN+P Sbjct: 590 ILKYR-TIAKLKSTYVDKLLLLKNPETGRIYTSFNQ-TITATGRLSSSNPNMQNIPIRME 647 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R + GK + AD + I+ RVLA +G Sbjct: 648 EGNR-------------------------IRRAFVPEAGKVFLAADYSQIDLRVLAHYSG 682 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + +AF G+D++ T A F+V+ V + R + K + Sbjct: 683 DDALTRAFAAGQDIHARTAAELFSVSTMLVNPEMRRVAKSIN--------------FGIV 728 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ A +R + + Sbjct: 729 YGMSAFGLAQQ------------------------------LGIGRKEAQRFIDRYFHLY 758 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + V + ++ EQT E G A GR D+ Sbjct: 759 AGVKQFMIDI---VEQTRERGYATTLL-----------------------GRRRAVPDID 792 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 + R +Q + DI+ M+ K G ++L + Sbjct: 793 AKNKGMR---EFAERMAINTP------IQGTAADIIKCAMIAVEKKLAAAGLGAKMLLQI 843 Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 HDE+V E + + ++ M S +PL A Sbjct: 844 HDELVFEVSEAELAETRVVVQEAMESALQ--LDVPLVA 879 >gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus 5a2] gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus 5a2] Length = 936 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 99/704 (14%), Positives = 211/704 (29%), Gaps = 165/704 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVL 57 T D ET S ++ +F + + + + Sbjct: 362 DTFCFDTETTSLDP----------YQAQLVGISFAYYPGEAYYVPIPAERKAAQAIIEEF 411 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEA 115 + LE+T V N ++ +L + +++ T+V P + A+ E+ Sbjct: 412 RPLLESTTQCKVGQNLKYDNLIL-RTYGIEVAP-PIFDTMVAHYLVAPDKPHNMNAIAES 469 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDR--NKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + K L EY D +T ++ + Sbjct: 470 Y-------------LNYAPIPIEALIGSRKSTQKSMRMVDVELVKEYACEDADITLQLKR 516 Query: 174 RLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 LE +E L + + +G +D + ++ + E L++E+ Sbjct: 517 LLELNIKQENLSKLFYEIEIPLVQVLTAMEYQGVQIDTQVLREISVTLGTELAALEKEIH 576 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L LF + + + T + VL+ K P A + + Sbjct: 577 RLAGHA-FNISSPKQLGEILFDKLKIAGNNKKTKSGQYATGELVLADLTKDHPIAANILD 635 Query: 279 NRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R + ++ L++ ++ DG++ + + TGR S QN+P + Sbjct: 636 YR-ELQKLKSTYVDALIDLISPFDGKVHTSYNQTVVT-TGRLSSTNPNLQNIPIRTEKGR 693 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQ 396 +R + L+ AD + IE R++A + ++ Sbjct: 694 A-------------------------IRKAFVPSKPDHVLLSADYSQIELRIMASFSQDE 728 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF+ G+D++ T ++ F V QV + R K G Sbjct: 729 HMIEAFKAGKDIHTATASKLFKVPLEQVDESMRRQAKTANF--------------GIIYG 774 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + +A+ Q+ Sbjct: 775 ISGFGLAQR------------------------------LGISRSEAIATIQAYFQEFHA 804 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + + + G GR RD+ + Sbjct: 805 IKAYMDRVIGQARE---QGYVTTL-----------------------MGRKRYLRDINSR 838 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630 S L R +Q + +++ M++ K ++L VHD Sbjct: 839 NSTLRGFD---ERNAINTP------IQGTAAEMIKLAMVHIYEWLQKEKLQSKLILQVHD 889 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+V + P + + + M ++ A G+P++ + K + Sbjct: 890 ELVFDVPQHEIEIMREHVAYFMKNSLPLA-GVPVEVQIGLGKNW 932 >gi|284035476|ref|YP_003385406.1| DNA polymerase I [Spirosoma linguale DSM 74] gi|283814769|gb|ADB36607.1| DNA polymerase I [Spirosoma linguale DSM 74] Length = 1024 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 93/700 (13%), Positives = 204/700 (29%), Gaps = 162/700 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKE 59 L D ET + + + ++ +F + D + K Sbjct: 453 LCFDSETTAIDPV----------EADLVGLSFAYRAGEAFYVPVPADRAEAQAIVDQFKP 502 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117 EN + V N ++ +LK +++ + T++ + + + Sbjct: 503 VFENPTIEKVGQNLKYDLLMLKKY-GVEVQ-GKLFDTMIAHYLIEPEMRHNMDMMA--MT 558 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + E + LI + + +Y D +T ++ P Sbjct: 559 YLNYSPVEIEALIGK---------KGKGQLTMRDVDIQKVVDYAGEDADITLQLKHAFAP 609 Query: 178 LSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 K+ L + + G +D L+ ++V+ ++ QE+ + Sbjct: 610 RLEKDNLHKLFDQVEMPLVQVLTDLELEGIKIDTNALSELSATLEVDMRQVQQEIFEIAG 669 Query: 228 GLVSSSRCLEKLKTWLFLETGLHL-EDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L LF + L T+T T + +LS + A ++ + R Sbjct: 670 -ESFNIGSPKQLGEVLFDKLKLDKNAKKTKTGQYATGEEILSKLEAEHEIARKILDYR-E 727 Query: 283 ASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ L ++ GR+ + A+ TGR S QN+P + +E Sbjct: 728 LIKLKNTYVDALPLLISKRTGRIHTSFNQAVAA-TGRLSSTNPNLQNIPIRTPRGQE--- 783 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R + ++ AD + IE R++A +G+Q L+ Sbjct: 784 ----------------------IRKAFVPRGPEFVIMSADYSQIELRIMAAFSGDQTMLE 821 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ T ++ F+V +VT D R K + + Y L + Sbjct: 822 AFNNGVDIHTQTASKVFHVGLDEVTSDMRRKAKTINFGIIYGIS-----SFGLAQRLKIP 876 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + +++ E + Sbjct: 877 RKEAGQIIEEYFAGFPAVKDYIDQCIEKARGFGYAETI---------------------- 914 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 +RR + + + + + Sbjct: 915 -------------------LGRRRYLRDINSRNQTDRMF--------------------- 934 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVC 634 R +Q + D+L M+ + ++LTVHDE+V Sbjct: 935 ------AERNAVNAP------IQGSAADMLKIAMIQIHEFMQAERLKSKMILTVHDELVF 982 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + + +M + G+ ++ + + Sbjct: 983 DAHRDEIDLLRVRVDEIMKNAIP--MGVKMETGIGTGENW 1020 >gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827] gi|188023732|gb|EDU61772.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827] Length = 930 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 100/697 (14%), Positives = 200/697 (28%), Gaps = 147/697 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52 D ET S ++ ++ +F + HD Sbjct: 351 IFAFDTETDSLD----------TQEARLVGMSFAIEPGYAAYLPLGHDYLDAPVQLPLND 400 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 + +K LEN + + N ++ VL ++++ T++ + + + Sbjct: 401 VLAAMKPILENDKILKIGQNLKYDAEVLLNY-DIELKGIA-FDTMLESYVLNSVAGMG-- 456 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + E L + E + ++ A Y D VT + Sbjct: 457 ----RHDMDSLAERH-LNHKTVSFEEIAGKGKKQLTFNQIALEQAANYAAEDADVTLLLH 511 Query: 173 KRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P E L + + +G +D A+ ++ + +L++E Sbjct: 512 QALYPQLEAEPKLNHVFREIEMPLVPVLVRMERKGVLIDAAVLAAQSKEITARLAELEKE 571 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 L + ++L+T LF + L + T + T + VL + Sbjct: 572 AFELAG-EEFNLASTKQLQTILFEKLQLPVVKKTPSGAPSTNEEVLEELALNHALPKLLL 630 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R ++ + L +++ + T + TGR S QN+P + Sbjct: 631 EHR-SLAKLKSTYTDKLPLMISTKTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRTEEGR 689 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R IA +G K+V AD + IE R++A ++ ++ Sbjct: 690 R-------------------------IRQAFIARKGYKVVAADYSQIELRIMAHLSQDKG 724 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF G+D++ T A F V +VT DQR K + L Y A L Sbjct: 725 LLTAFAEGKDIHRATAAEVFGVPLDEVTSDQRRSAKAINFGLIYGMSA-----FGLARQL 779 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + E + + + E + G + + + Sbjct: 780 GIPRGEAQRYMDLYFERYPGVLRYMENTRHQAAEQGYVETLEGR--RLYLADIKSSN-GM 836 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + G A K+ + + L P Sbjct: 837 RR--KAAEREAINAPMQGTAADIIKKAMIAVD------AWLQTEKPH------------- 875 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 D+L +V E Sbjct: 876 -----------------------------ADMLM----QVHDE-----------LVFEVK 891 Query: 638 DTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++ + + + LM + +PLK + + Sbjct: 892 ESELDSVTTKIRELMEQSMQ--LDVPLKVDVGIGDNW 926 >gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CNPAF512] Length = 997 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 106/717 (14%), Positives = 199/717 (27%), Gaps = 169/717 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---------PVELWDCVHDP--- 51 + D ET S A ++ F+ D+ H Sbjct: 399 VAFDTETTSLD----------AMQAELVGFSMAIADNVADPSGTKIRAAYVPLAHKNGVG 448 Query: 52 ---------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 LK LE+ V VA N ++ +LK I + T Sbjct: 449 DLLGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDT 505 Query: 97 LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 ++++ + + E G I + N Sbjct: 506 MLISYVLDAGTGAHGMDPLSEKF--------LGHTPIPY----KDVAGSGRANVTFDLVD 553 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVAL 203 Y D VT ++ L+P E+ L + + RG VD + Sbjct: 554 IDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQI 613 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTC 259 L+ + +L+ E+ +L + ++L LF + GL T+ +T Sbjct: 614 LSRLSGELAQGAARLEDEIYTLAG-ERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTS 672 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + + + ++ + L ++ + + T L ++ TGR Sbjct: 673 ASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRL 732 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+P + + +R+ I++ G KL+ A Sbjct: 733 SSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHKLISA 767 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA +A KAFE G D++ T + F V + + R K + + Sbjct: 768 DYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGI 827 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y A L++ E + ++ + + + Sbjct: 828 IYGISA-----FGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF 882 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 G R + V +A G A +R + + + Sbjct: 883 GRRINYP--EIRSSNPSVRAFN---ERAAINAPIQGSAADVIRRAMIKIEPALAEAGL-- 935 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 R ++ Sbjct: 936 ---------------------------AERVRM---------------------LLQVH- 946 Query: 620 AGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 DE++ E D D ++ +M + P+ +PLK + + + Sbjct: 947 ----------DELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVDARAATNW 993 >gi|332991521|gb|AEF01576.1| DNA polymerase I [Alteromonas sp. SN2] Length = 935 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 103/703 (14%), Positives = 197/703 (28%), Gaps = 162/703 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + +D ET S Y E ++ +F + HD + Sbjct: 358 IAVDTETTSVN---------YME-AELVGVSFCIEPGAAAYVPVAHDYPDAPTQLSRDYV 407 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110 LK LE+ + V + +++ VL +++ + T++ + + Sbjct: 408 LSALKPILESETIIKVGQHIKYDKNVLA-HYDITLNGIG-FDTMLESYVLNSTAQRHDMD 465 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 ++ A G + I E + ++ G Y D +T Sbjct: 466 SLALAY--------LGHKTIHF----EEIAGKGAKQLTFNQIGLEEAGPYAAEDADITMR 513 Query: 171 IFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + + E + + + +G ++ +Q + +L+ Sbjct: 514 LHQAIWAKLENEPKLKALLVDVEVPVACVLSRMEQQGVLIESQRLRQQSQDLATRIAELE 573 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 +E+ V + ++L+ LF + L + T +T + VL P + Sbjct: 574 KEVHEEAG-EVFNLGSPKQLQHILFEKMSLPVIKKTPKGAPSTSEEVLQELALEFPLPKK 632 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R ++ + L + +N T + TGR S QN+P + Sbjct: 633 LMEYR-GLTKLKNTYTDKLPKMINHRTGRVHTSYHQAITATGRLSSTDPNLQNIPIRNEE 691 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + VR + EG K+V AD + IE R++A ++G+ Sbjct: 692 GRK-------------------------VRQAFVPREGYKIVAADYSQIELRIMAHLSGD 726 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF G D++ T A F V +VT +QR K + L Y A Sbjct: 727 EGLLDAFAHGRDIHKATAAEVFGVTLDEVTTEQRRSAKAINFGLIYGMSA-----FGLAK 781 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 LN+ + E + + +E E + G R Sbjct: 782 QLNIPRHEAQKYMDLYFERYPGVLEYMDSTREGAKEKGYVETVFGR---------RLYLP 832 Query: 516 RVS----ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + +A G A K + + + Sbjct: 833 DIKASNGARRKGAERAAINAPMQGTAADIIKMAMIKVDDWITSLESD------------- 879 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 D+L MM Sbjct: 880 ------------------------------------DVLM--MMQVHDE----------- 890 Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E + E + LM +PL + + Sbjct: 891 LVFEIREEHLEEQVKNIVSLMEQAA--VLNVPLVVDAGVGDNW 931 >gi|219815961|gb|ACL37082.1| DNA polymerase I [uncultured bacterium] Length = 942 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 98/700 (14%), Positives = 202/700 (28%), Gaps = 160/700 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQVL---K 58 D ET S L + ++ +F + + + Sbjct: 370 EFCFDSETTSLNTL----------EAEIVGLSFAVKSFSAYYVPFPANREEAQAKINAFR 419 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 E+ T++ N ++ VLK ++I ++ T+V + + + Sbjct: 420 SLFEDDTKTLIGQNIKYDFQVLKNY-GIEIK-NKLFDTMVAHFLIMPEMRHNMDILAQTY 477 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + LI + EY D VT ++ Sbjct: 478 --LNYSPVSIETLIGK---------KGKEQTSMRDVEIEKIKEYAAEDADVTFQLKTAFA 526 Query: 177 PLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P + + L + I G +DV + + + +++E++ Sbjct: 527 PKLIENEVEKLFTEVEVPLIKVLANIEREGINLDVPALKEFSGQLQNDIIIVEKEIQDFA 586 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF + T+T T + VLS + P ++ + R Sbjct: 587 GTK-FNVSSPKQVGEILFDYLKIVDKPKKTKTGQYATGEDVLSKLENAHPIVSKILDYR- 644 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++TL E +N + T + TGR S QN+P + Sbjct: 645 ELVKLKNTYVDTLPELVNEKTKRIHTSFNQVVAVTGRLSSDNPNLQNIPIRTERGR---- 700 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I + L+ AD + IE R++A ++G++ + Sbjct: 701 ---------------------QIRKAFIPRDSDHVLLSADYSQIELRIVASISGDKNMCE 739 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ G+D++ T A+ F VA A VTK+ R K + G Sbjct: 740 AFQLGKDIHTATAAKVFGVAEADVTKEMRYKSKSVN--------------FGIIYG---- 781 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + T + + + +++ + Sbjct: 782 --------------------------QGAFGLSENLNISRTEAKELIDNYFKEYGAIKSY 815 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + N + GR RD+ + + Sbjct: 816 MDRTINFARE--------------------------NGYVKTLLGRKRWLRDITSANA-- 847 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 T R +Q + D++ M+N ++L VHDE+V Sbjct: 848 -TVRSYAERNAINAP------IQGSAADMIKVAMINIYNELEKQNFKTKMLLQVHDELVF 900 Query: 635 ETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + + + LM +P++ + Sbjct: 901 DVYKPELEKVKPIIEKLMREALP--LDVPVEVGLGTGDNW 938 >gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3] Length = 732 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 105/717 (14%), Positives = 198/717 (27%), Gaps = 169/717 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---------PVELWDCVHDP--- 51 + D ET S A ++ + D+ H Sbjct: 134 VAFDTETTSLD----------AMQAELVGISMAIADNVADPSGTKIRAAYVPLSHKNGVG 183 Query: 52 ---------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 LK LE+ V VA N ++ +LK I + T Sbjct: 184 DLLGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDT 240 Query: 97 LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 ++++ + + E G I + N Sbjct: 241 MLISYVLDAGTGAHGMDPLSEKF--------LGHTPIPY----KDVAGSGRANVTFDLVD 288 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVAL 203 Y D VT ++ L+P E+ L + + RG VD + Sbjct: 289 IDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQI 348 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTC 259 L+ + +L+ E+ +L + ++L LF + GL T+ +T Sbjct: 349 LSRLSGELAQGAARLEDEIYTLAG-ERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTS 407 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + + + ++ + L ++ + + T L ++ TGR Sbjct: 408 ASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRL 467 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+P + + +R+ I++ G KL+ A Sbjct: 468 SSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHKLISA 502 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA +A KAFE G D++ T + F V + + R K + + Sbjct: 503 DYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGI 562 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y A L++ E + ++ + + + Sbjct: 563 IYGISA-----FGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF 617 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 G R + V +A G A +R + + + Sbjct: 618 GRRINYP--EIRSSNPSVRAFN---ERAAINAPIQGSAADVIRRAMIKIEPALAEAGL-- 670 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 R ++ Sbjct: 671 ---------------------------AERVRM---------------------LLQVH- 681 Query: 620 AGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 DE++ E D D ++ +M + P+ +PLK + + + Sbjct: 682 ----------DELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVDARAATNW 728 >gi|81299005|ref|YP_399213.1| DNA polymerase I [Synechococcus elongatus PCC 7942] gi|81167886|gb|ABB56226.1| DNA polymerase I [Synechococcus elongatus PCC 7942] Length = 953 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 112/701 (15%), Positives = 222/701 (31%), Gaps = 154/701 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDP-------VMPQVL 57 D ET ++ + + P + H+ + L Sbjct: 371 DTETTDLDP----------RLAQLVGIGCAWGEEPDQLAYIPLGHEEGEQLPLQTVLTAL 420 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 + LE+ N+ F+R +L +++ T++ + +L A+ + Sbjct: 421 RPILESDRHPKALQNAKFDRLIL-RHQGIELA-GVVFDTMLASYLLNPSLGHSLDALADR 478 Query: 116 -LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 LKL ++ + + K + A +YC DV V + + Sbjct: 479 WLKLQTRSYSDL----------------VPKGKTIAQVAIAAVAQYCGSDVHVVQRLIPL 522 Query: 175 LE------PLSSKEQELWY-----LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+ P E + + DRG +D L++ + E +L+ Sbjct: 523 LKAGIAESPALQFLLETVELPLEAVLAEMEDRGIRIDEGYLAELSEHLKGELDRLEGAAH 582 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFN 278 +L + ++L LF + GL+++ T+ +T VL + P + Sbjct: 583 TLAGDR-FNLGSPKQLSELLFEKLGLNVKKSRKTKTGYSTDAAVLEKLQGDHPIIDLILE 641 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R ++ ++ L + +DGR+ + TGR S QN+P + Sbjct: 642 HR-TLAKLKSTYVDALPSLVAADGRIHTDFNQAV-TATGRLSSSNPNLQNIPIRTE---- 695 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 S +R + EG L AD + IE R+LA ++ E Sbjct: 696 ---------------------FSRQIRKAFLPREGWLLAAADYSQIELRILAHLSQEPVL 734 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+A+ G+D++ T + F ++T ++R IGK++ + Y GA+ F Sbjct: 735 LEAYRQGDDVHRLTASLLF--DREEITSEERRIGKIINFGVIYGMGAQRF-----ARETG 787 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 +T + + + + + ++ + +G + + Sbjct: 788 SSTKEAQGFIDRFYDRYPRVFTYLQSLERQAIARGYVETVLGR------RRYFD------ 835 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 +D L S+ + +R Sbjct: 836 ---------------------------------FEDTGLQKLRGSDPESIDLDKIRPSRF 862 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634 QL R +Q S DI+ M+ ++L VHDE+V Sbjct: 863 -----EAQLLRAAANAP------IQGSSADIIKVAMVQLQALLQSYQARMLLQVHDELVL 911 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E P + + + + M +PL E + + Sbjct: 912 ELPPEEWDSLAPQIQQTMEQAVQ--LTVPLAVELHAGHNWM 950 >gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP] gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP] Length = 962 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 100/724 (13%), Positives = 207/724 (28%), Gaps = 179/724 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53 + +D ET A ++ +F + H + Sbjct: 362 KLVAVDTETD----------NVDAMSAHLVGISFSLSNGEACYIPLAHTQQISVQPQQED 411 Query: 54 -------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 LK LEN ++ V N ++ TV +++ Sbjct: 412 LFAETDNDAITQFQLASNQLNLTACLAQLKPLLENVEIKKVGQNIKYDLTVFANH-GIEL 470 Query: 89 PIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 T++ + + + + E L + E Sbjct: 471 QGVA-FDTMLESYTLNSTGRHNMDELAERY------------LDHKTIAFEDIAGKGKNQ 517 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFK-----------RLEPLSSKEQELWYLDQTINDR 195 + A EY D +T ++ + ++ + E L + + Sbjct: 518 LTFDKIAIETATEYAAEDADITMKLHQQLITSLAKTPSLIKLFNEIEMPLVNVLARVEQN 577 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G +D ++ ++ +++ + + + ++L+ LF + L + T Sbjct: 578 GVLIDSDKLLAQSKEMEQRLAEVEIAVHTAAGQA-FNLASTKQLQEILFEKLALPVLKKT 636 Query: 256 E----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQF 310 +T + VL + ++ + S+ + L + +N GR+ + Sbjct: 637 PKGAPSTNEEVLEQLAQQGHLVPKLLSEHRALSKLKSTYTDKLPKMINQHTGRVHTSYHQ 696 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 + TGR S QN+P + + +R IA Sbjct: 697 AVTT-TGRLSSSDPNLQNIPIRTEAGRR-------------------------IRQAFIA 730 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 +G K+V AD + IE R++A +A ++ + AF G+D++ T A F ++ A+VT +QR Sbjct: 731 RDGYKIVAADYSQIELRIMAHLANDEGMITAFANGQDIHQATAAEIFGLSLAEVTSEQRR 790 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + L Y L ++ + + + + F R ++E+ Sbjct: 791 SAKAINFGLIYGMS-----DFGLANQLAISRDEAKEYMARYFQRYPNVQQFMRDIRESAS 845 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + G R + + A + AI A + + Sbjct: 846 VKGYVETLFGR---------RLYLPEIKS-----NNAIRRKAAERLAINAPMQGTAADII 891 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + + +Q+ R + Sbjct: 892 KI--------------------------AMISIDKQI-RADQN----------------I 908 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYE 669 M VHDE++ E ++ M A +PL AE Sbjct: 909 KMIM------------QVHDELIFEVKQECIEYYTGLIKTEMEKAI--AMKVPLIAEVGV 954 Query: 670 SKRY 673 + Sbjct: 955 GANW 958 >gi|319781431|ref|YP_004140907.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167319|gb|ADV10857.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 997 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 101/686 (14%), Positives = 201/686 (29%), Gaps = 153/686 (22%) Query: 27 DVCVILFAFGFDDHPVELWDCVH-------------DPVMP-----QVLKEALENTDVTI 68 +I A H + +P VLK LE+ V Sbjct: 422 QAELIGMAIATAPGRAAYIPFAHMSGNGDLLGGGALENQIPLREALAVLKPLLEDRSVLK 481 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALKAVGEALKLSSQKME 124 +A N ++ ++ + + + T++++ + A+ E Sbjct: 482 IAQNLKYDLVIMSRY---GVDVAPFDDTMLISYVLDAGTPHGHGMDALAE---------- 528 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----- 179 K L + + + + + D VT ++ L+P Sbjct: 529 --KWLGHTPLQLKDVTGSGKSSVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAAKGL 586 Query: 180 -----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E+ L + + RG VD + L+ + +L++E+ L + + Sbjct: 587 VSVYERLERPLVPVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQLIGERI-NIG 645 Query: 235 CLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF GL T+ +T ++L + + + + ++ Sbjct: 646 SPKQLGDILFGRMGLPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTY 705 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L ++ D + T L A+ TGR S QN+P + + Sbjct: 706 TDALPGFIHPDTKRVHTSYALAATTTGRLSSSDPNLQNIPVRTAEGRK------------ 753 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R+ I + +LV AD + IE RVLA +A +AF G D++ Sbjct: 754 -------------IRTAFITDKSHRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHA 800 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + FNV + + R K + + Y A L++ Sbjct: 801 ITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISA-----FGLANQLSIPREEAGNYIKK 855 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 E + ++ + EH + G R + + +A Sbjct: 856 YFERFPGIRDYIEETKAYAREHGFVETIFGRRIHYP--DIRSSNPSLRAFN---ERASIN 910 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 G A +R + L R Sbjct: 911 ARLQGTAADIIRR-----------------------------------AMIRMEEALERA 935 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH- 649 +S ++L VHDE++ ET + + + Sbjct: 936 -------------GLSA---------------RMLLQVHDELIFETVEAEVEATIPVVRH 967 Query: 650 LMTSN--PSWAKGLPLKAEGYESKRY 673 +M + P+ + +PL + + + Sbjct: 968 VMENAAMPAVSMSVPLHVDARAANNW 993 >gi|254469004|ref|ZP_05082410.1| DNA polymerase I [beta proteobacterium KB13] gi|207087814|gb|EDZ65097.1| DNA polymerase I [beta proteobacterium KB13] Length = 901 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 94/701 (13%), Positives = 207/701 (29%), Gaps = 165/701 (23%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---------MPQV 56 +D ET S + + ++ + + H + + Sbjct: 329 LDTETDSLNFM----------EARLVGVSLAYQAGKACYIPLQHQDMSIPQLPLNLVLNK 378 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGE 114 +K EN ++T V N ++ VLK ++ T++++ + + + Sbjct: 379 IKSITENENITKVGQNIKYDMHVLKNY-DVTFK-GPIEDTMIMSYVIDSTESHGMDKLAK 436 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + I+ E+ + + + Y D VT ++++ Sbjct: 437 KY--------LDHDCISF----ESVVGKGVKQLTFDQVSIDDAYLYASEDADVTLQLYEH 484 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L E I G + + H NQ + ++ L+ E Sbjct: 485 LNKKIIADSKLNYIYKEIEIPSLLTLFCIERNGVLISEKILHDQNQDLGLKILNLENEAY 544 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+ LF + + T +T + VL + + Sbjct: 545 QIAEQP-FNLSSPKQLREILFDKMKIIPTKKTPTGTPSTSEDVLEELSHDHALPKVILEH 603 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L + +N + + T + TGR + QN+P ++ + Sbjct: 604 R-SLSKLKNTYTDKLPKMINLNTKRIHTSYNQAVAITGRLASSEPNLQNIPIKTKEGRK- 661 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 VR IA+ ++V D + IE R++A ++ + L Sbjct: 662 ------------------------VREAFIANTDSQIVSCDYSQIELRIMAHLSKDPGLL 697 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF ED++ +T + FN A V+ +QR KV+ G++ Sbjct: 698 DAFNQNEDIHRSTASAIFNTNDASVSSEQRRFAKVIN--------------FGLIYGMS- 742 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + + +K+ V Sbjct: 743 -----------------------------AFGLSQTLNIDRNSAKNFIDQYFEKYPGVKN 773 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ ++ + GR L + ++ Sbjct: 774 YMDQGKLVAKE--------------------------QGYVETVFGRRLWVPLINSSNGI 807 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633 + +Q + D++ M N K +++ VHDE+V Sbjct: 808 QRAAAER---------AAINAPMQGTAADLIKMAMNNVQQWIGDNKLETLMIMQVHDELV 858 Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P+ + + +M++ + +PL A+ + Sbjct: 859 LEVPNAELDIIKTEIPKIMSNVAT--LDVPLIADLGSGINW 897 >gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23] gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23] Length = 921 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 98/694 (14%), Positives = 192/694 (27%), Gaps = 147/694 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQV---L 57 L +D ET S + D ++ +F + + Q+ Sbjct: 349 KILSLDTETTSTSAI----------DAELVGLSFAVKEFEAFYVPVPANREEALQIVNIF 398 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115 K A EN ++ V N ++ VL+ +++ W T++ + + E Sbjct: 399 KPAYENPEILKVGQNLKYDLEVLRNY-GIELKGKMW-DTMIAHYLIQPELHHNMDYMAEI 456 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + +ELI K EY D +T + +L Sbjct: 457 Y--LNYQTIHIEELIG---------PKGKNQKSMRSLPPSQVYEYAAEDADITLRLKNKL 505 Query: 176 EPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 EP E L + + G C+D A ++ +++ + L Sbjct: 506 EPELKKAECEDLFYNIEMPLMPVLAEMELNGVCLDTASLAETSKQFTNRMNEIEARIYEL 565 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL + + +R Sbjct: 566 AG-EQFNIASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLQQLRNKHEIVADILEHR 624 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N T + TGR S QN+P +E Sbjct: 625 -GLKKLIGTYIDALPKLINPKTGHIHTSFNQTITATGRLSSSDPNLQNIPIRGEDGKE-- 681 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I G AD + IE RV+A ++ + +K Sbjct: 682 -----------------------IRKAFIPEPGCLFFSADYSQIELRVMAHLSQDAEMIK 718 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F G+DL+ T A + +VT+D+R K + Y L++ Sbjct: 719 VFSEGKDLHAATAANIYKKPIEEVTRDERTKSKRANFGIIYGITV-----FGLAERLDIP 773 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + ++ +E E Sbjct: 774 RDEAKMLIDGYFDTFPQVHDYMEKSKEVAREKGYVTTLF--------------------- 812 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 +RR +P + + + Sbjct: 813 --------------------GRRRYLPDINSHNATVRGFAERNA--------INAPIQGT 844 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 ++ Y E I ++L VHDE+ + Sbjct: 845 AADIIKVAMIRIYNRFKAEGI-------------------RSKMILQVHDELNFSVYPDE 885 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PL A+ K + Sbjct: 886 KEKVEGIVLQEMQNA--LNLSVPLVADSGFGKNW 917 >gi|190889822|ref|YP_001976364.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CIAT 652] gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CIAT 652] Length = 997 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 106/717 (14%), Positives = 199/717 (27%), Gaps = 169/717 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---------PVELWDCVHDP--- 51 + D ET S A ++ F+ D+ H Sbjct: 399 VAFDTETTSLD----------AMQAELVGFSMAIADNVADPTGTKIRAAYLPLAHKNGVG 448 Query: 52 ---------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 LK LE+ V VA N ++ +LK I + T Sbjct: 449 DLLGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDT 505 Query: 97 LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 ++++ + + E G I + N Sbjct: 506 MLISYVLDAGTGAHGMDPLSEKF--------LGHTPIPY----KDVAGSGRANVTFDLVD 553 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVAL 203 Y D VT ++ L+P E+ L + + RG VD + Sbjct: 554 IDRATHYAAEDADVTLRLWLVLKPRLVAAGLTSVYERLERPLLPVLARMEARGITVDRQI 613 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTC 259 L+ + +L+ E+ +L + ++L LF + GL T+ +T Sbjct: 614 LSRLSGELAQGAARLEDEIYTLAG-ERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTS 672 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + + + ++ + L ++ + + T L ++ TGR Sbjct: 673 ASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRL 732 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+P + + +R+ I++ G KL+ A Sbjct: 733 SSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHKLISA 767 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA +A KAFE G D++ T + F V + + R K + + Sbjct: 768 DYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGI 827 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y A L++ E + ++ + + + Sbjct: 828 IYGISA-----FGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF 882 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 G R + V +A G A +R + + + Sbjct: 883 GRRINYP--EIRSSNPSVRAFN---ERAAINAPIQGSAADVIRRAMIKIEPALAEAGL-- 935 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 R ++ Sbjct: 936 ---------------------------AERVRM---------------------LLQVH- 946 Query: 620 AGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 DE++ E D D ++ +M + P+ +PLK + + + Sbjct: 947 ----------DELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVDARAATNW 993 >gi|91070002|gb|ABE10928.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC3046] Length = 976 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 110/712 (15%), Positives = 201/712 (28%), Gaps = 160/712 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD---------- 50 + +D ET S + + ++ + + H Sbjct: 382 IVSLDTETNSLNPI----------NAELVGIGLCLGEENDDLFYIPLGHQTKKGTSNQLS 431 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPS 107 + L+ +E+ NS F+R + LD+ TL+ Sbjct: 432 IEDVFSKLRNWIEDPKKEKALQNSKFDRQIFFNH-GLDLK-GVTFDTLLADYLLNNQEKH 489 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L + L K + +NK YC DV + Sbjct: 490 GLSEISFRL---------------FGFKPPLFKETVGKNKDFSFVDIDEASIYCGYDVFL 534 Query: 168 TREIFKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 T +I K + E L + + G +D+ L++ + Sbjct: 535 TFKIVKIFKESFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTL 594 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270 ++ ++ L + ++L LF + L + T+ +T VL Sbjct: 595 EDIESKVYELAG-ENFNLSSPKQLGEILFDKLNLDKKKSRKTKTGWSTDAVVLERLVDEH 653 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 + +R S+ ++ L +N GR+ A+ TGR S QN+ Sbjct: 654 EIIQHLIKHR-TLSKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNI 711 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P + S +R + + KL+ AD + IE R+L Sbjct: 712 PVRTE-------------------------FSRRIRKAFLPEKNWKLLSADYSQIELRIL 746 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A E+ + AF +D++ T F +++ ++R +GK + + Y G K Sbjct: 747 AHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSEERRVGKTINFGVIYGMGIKK-- 802 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 A +TG++ E + F + G E Sbjct: 803 -FARSTGVSTPE--AKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK 859 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + K+ + L S R Sbjct: 860 -------------------------------------NGLGRLIGKDPYEIDLQSARR-- 880 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623 Q R +Q S DI+ M+ K Sbjct: 881 -----------AGMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKFIEMNIPAK 923 Query: 624 IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE++ E PD+ E ++ M +PL + + Sbjct: 924 MLLQVHDELLFEVEPDSLEITTKLVKKTMEDCVK--LNVPLLVDIGIGDNWM 973 >gi|307299338|ref|ZP_07579139.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2] gi|306915134|gb|EFN45520.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2] Length = 896 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 205/705 (29%), Gaps = 167/705 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMP 54 ID ET S ++ + D+ H+ + Sbjct: 324 IFAIDLETSSLDP----------HCAKIVGVSISIDEGSGYYIPIAHESDGWQADRDYVL 373 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKA 111 + LK+ LE+ I+ N F+ +VL + P+ T++ A + L Sbjct: 374 KNLKKLLEDRSTKIIGQNLKFDYSVLA-VNGIH-PVVPDFDTMLAAYLLSPDAKRFNLDE 431 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + +K K + ++L+ + Y D ++ + Sbjct: 432 LA--MKFLGYKTIKFEDLMK----------KNQLGDDFTKVPLEEAARYSVEDADISLRL 479 Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 L ++ L + + G DV L++ K+ +E Sbjct: 480 SSVLRKKIYEQELEEIFRKVELALIPVLADLELNGVYFDVPSLKNLSEKYGKILDKILEE 539 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 L LT + ++ LF GL T+ +T L P ++ Sbjct: 540 LFDLTG-EQFNPNSPSQVGKVLFERLGLTPSKKTKGGSYSTSADALEEIADEHPAVQKLL 598 Query: 278 NNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + R + + L++L E +N GR+ + G + TGR S QNLP Sbjct: 599 DYR-KYQKLKSTYLDSLPELVNKVTGRIHTSYHQTG-TGTGRLSSSNPNMQNLPIRDEEG 656 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGE 395 +E +R CVI +G K+V AD + IE R+LA ++ + Sbjct: 657 KE-------------------------IRKCVIPQKKGWKIVSADYSQIELRILAHLSQD 691 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF+ +D++ T + + + ++V+++QR I + Sbjct: 692 KQLLDAFKNDKDVHSLTASNLYGIKESEVSEEQRRI--------------GKMINFSIIY 737 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A E + + + Sbjct: 738 GISSYGLASR------------------------------LRIPTNVAEEMISNYFKAFP 767 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + ++ + GR Sbjct: 768 EVRAFIRDTISEAKE--------------------------KCFVRTMFGRKREIPQFKT 801 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629 ++ R +Q + DI+ M+ + +L VH Sbjct: 802 KN---RNVIQEGERIAINTP------IQGTAADIMKMAMIKIYNLLKEKEMESFAILQVH 852 Query: 630 DEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+V E P+ + + M+ +PL E + Sbjct: 853 DEMVYEAPEKEIEKLKEILKEGMSEVVE--LSVPLDIEISVGDYW 895 >gi|39937781|ref|NP_950057.1| DNA polymerase I [Rhodopseudomonas palustris CGA009] gi|39651641|emb|CAE30163.1| DNA polymerase I [Rhodopseudomonas palustris CGA009] Length = 1025 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 100/710 (14%), Positives = 198/710 (27%), Gaps = 168/710 (23%) Query: 11 RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------------- 51 + L +I A + +H Sbjct: 433 TGIVALETVATSIDPMQAELIGLALALGPNDACYIPLLHKQSGDGDGLFAAGLAPDQIGP 492 Query: 52 -VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PS 107 LK LE+ V V F +L + + +++ + Sbjct: 493 RDALDALKPILESAGVAKVGFAIKFAAVLLAQH---GLTLRNIDDPQLMSYALDAGRGSH 549 Query: 108 ALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 AL A+ E+ L + + E + Y Sbjct: 550 ALDALSESNLGHTLHTLTEL-------------TGTGKNKIGFDQVPVDRATAYAAERAD 596 Query: 167 VTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 V+ + + L+P + E+ L + + RG +D + L+ Sbjct: 597 VSLRLARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLSADFAQTAA 656 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQ 272 +++ E+ L + + ++L LF + GL T+ +T +VL + + Sbjct: 657 RIEAEIRELAGEDI-NIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHE 715 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + + + S+ + L ++ T L A+ TGR S QN+P Sbjct: 716 FPRKILDWRQVSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVR 775 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + + +R +A+ G KLV AD + IE R+L+ + Sbjct: 776 TEDGRK-------------------------IRRAFVATPGNKLVSADYSQIELRLLSEV 810 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 A KAF+ G D++ T + F V + + R K + Sbjct: 811 ADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINF--------------G 856 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ A+ + K + + Sbjct: 857 IIYGISAFGLANQLSI------------------------------PREEAGAYIKRYFE 886 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + +E +G GR Y D Sbjct: 887 RFPGIRAYMDETRDF---CRNHGYVTTL-----------------------FGRKCHYPD 920 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVL 626 + + + R Q + DI+ M+ K ++L Sbjct: 921 IKASNP---SIRAFNERAAINARL------QGSAADIIRRAMVRMEDALAEKKLSAQMLL 971 Query: 627 TVHDEIVCETPDTDEFN-ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 VHDE++ E P+ + ++ +M P+ +PL+ + + + Sbjct: 972 QVHDELIFEVPEAEVEATLPVVRAVMQDAPFPAVILNVPLQVDARAADNW 1021 >gi|115526809|ref|YP_783720.1| DNA polymerase I [Rhodopseudomonas palustris BisA53] gi|115520756|gb|ABJ08740.1| DNA polymerase I [Rhodopseudomonas palustris BisA53] Length = 1012 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 94/693 (13%), Positives = 193/693 (27%), Gaps = 166/693 (23%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDP--------------------VMPQVLKEALENTDV 66 + A + H + L+ LE+ V Sbjct: 436 QAELCGLALALTPNEACYIPLGHKQSGDGDGLFAAGLAPDQIGTRDALEALRPLLESPGV 495 Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKM 123 + N F +L + + +++ + L A+ E Sbjct: 496 LKIGFNIKFTAVLLAQH---GLTLQNHDDVQLMSYALDAGRHAHGLDALAE--------N 544 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 G + ++ + A Y D V +++ L+P + E+ Sbjct: 545 WLGHKALSY----GEVIGSGKAKLGFDQVAIDRATCYAAEDADVALRLWRILKPRLTAER 600 Query: 184 ELWY----------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + + + RG +D + L+ +++ E+ + + Sbjct: 601 MMTVYETLERPLIGVLARMERRGISIDRQVLARLSSDFAQTAARIEAEIREIAG-EELNI 659 Query: 234 RCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + GL T+ +T +L + Q + + + S+ Sbjct: 660 GSPKQLGDVLFGKMGLPGGKKTKTGAWSTSASILDELAEEGHQFPRKILDWRQVSKLRST 719 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L ++ T L A+ TGR S QN+P + + Sbjct: 720 YTDALPTYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRK----------- 768 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R IA+ G KLV AD + IE R+L+ +A AF+ G D++ Sbjct: 769 --------------IRRAFIAAPGHKLVSADYSQIELRLLSEVAEVPALRTAFQDGIDIH 814 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + F V + + R K + G++ Sbjct: 815 AMTASEMFGVPVKDMPGEVRRRAKAINF--------------GIIYGIS----------- 849 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A + K + ++ + + + + Sbjct: 850 -------------------AFGLANQLGIPREEAGAYIKKYFERFPGIRDYMDATKEFCR 890 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + + GR Y D+ + + R Sbjct: 891 --------------------------AHGYVETLFGRKCHYPDIKASNP---SIRAFNER 921 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN 643 Q + DI+ M+ A ++L VHDE++ E PD + Sbjct: 922 AAINARL------QGTAADIIRRAMVRMEDALAAKQLSAQMLLQVHDELIFEVPDDEVAA 975 Query: 644 -ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++ +M P+ +PL+ + + + Sbjct: 976 TLPVVQQVMQDAPFPAVLLSVPLQVDARAADNW 1008 >gi|149177359|ref|ZP_01855964.1| DNA polymerase I [Planctomyces maris DSM 8797] gi|148843884|gb|EDL58242.1| DNA polymerase I [Planctomyces maris DSM 8797] Length = 900 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 107/706 (15%), Positives = 210/706 (29%), Gaps = 168/706 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV--------HDPVM 53 +D ET + ++ +A ++ H + Sbjct: 318 DEFCVDLETTGLKP----------AEAEIVGWAISWEKHRGFYIPVEGPSGQLALDPQYV 367 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110 + LK LE+ ++ I N ++ VL + + +V + +L Sbjct: 368 LEHLKPILEDPEILITNQNIKYDMVVLMR-VGVFLQGVSI-DPMVASYLISAGERGHSLD 425 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + E + M ELI + K EY D + + Sbjct: 426 KLSERY--LNHTMIPISELI----------GSGKQQKKMFEVDVDKVAEYAVEDAEIAWQ 473 Query: 171 IFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + + L+ E+ L + + G VD A +Q+++ T L Sbjct: 474 LSRILQDELKHAGLWELYWELERPLISILAEMEFTGIKVDTAELKQQSQLLEKRLTTLIS 533 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277 E+ + + +L+T LF E L + T+ +T Q VL L ++ Sbjct: 534 EIHEIAGH-EFNIASPLQLRTVLFEELNLPVFKKTKTGPSTDQSVLEKLAPLHALPARIT 592 Query: 278 NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R S+ L+ L +N + GR+ + + A+ TGR S QN+P ++ Sbjct: 593 EHRH-LSKLKSTYLDALPGLVNPETGRIHASFNQVVAA-TGRLSSSDPNLQNIPVRTQEG 650 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGE 395 +R I E +L+ AD + IE R+LA ++ + Sbjct: 651 R-------------------------QIRKAFIPQDENWRLLCADYSQIELRILAHLSQD 685 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF G D++ + F V QV D R K + Sbjct: 686 VALSQAFREGADIHTAVASDIFRVPHDQVDSDMRRTAKAVN--------------FGVIY 731 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G + + + + + + ++ Sbjct: 732 GQSPFGLSEAI------------------------------GIPQSEAAGFIEDYFVRYQ 761 Query: 516 RVSELWNEL-HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V E +++ +Q + GR ++ Sbjct: 762 GVREFLDQILEDCAKQ---------------------------KFVETICGRKR---EIQ 791 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 R + R ++Q + D++ + M+N + +++ + Sbjct: 792 GVRGGVQKQLNMPERTAI------NTVIQGSAADLIKQAMLNVSDRIKQEQHPGRMLMQI 845 Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E P T ++ M S +PL + + Sbjct: 846 HDELVFEVPLTALDTLGLIVREEMESAMD--LEVPLIVDMSSGLNW 889 >gi|219815948|gb|ACL37073.1| DNA polymerase I [uncultured bacterium] Length = 944 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 220/705 (31%), Gaps = 168/705 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58 D ET S + + + ++ A + D + + + Sbjct: 370 EFCFDTETTSLVAI----------EAELVGLALSYYAGEAYYVPFPADKAQTQAILEEFR 419 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE-A 115 LE+ ++ + N ++ TVLK N++I T++ + ++ A+ E Sbjct: 420 GVLESENIKKIGQNLKYDITVLKKY-NIEIK-GECFDTMLASYLLDPDNRHSMDAMAEKY 477 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L S K++ LI + EY D +T ++ + Sbjct: 478 LNYSPVKIDT---LI------GKKSTKNTTQGNMRDVEVQKVVEYAGEDADITLQLKEYF 528 Query: 176 EP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 P + E L ++ I G +D ++I+D + L+Q + + Sbjct: 529 APKVAERPILEKLFKTVEMPLMHVLAHIEATGVRIDTQALAESSEILDKDIKILEQTIYT 588 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L+ V + ++L LF + L + T + VL+ Q+ Sbjct: 589 LSG-EVFNIASPQQLGKVLFEKLNLMKNPPKTKTGQYATGEEVLTKL-TDNEIVQQILEI 646 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R + ++ L ++ DGRL + + TGR S QN+P + E Sbjct: 647 R-ELQKLKSTYVDALPALVSKIDGRLHTSYNQAVVA-TGRLSSTNPNLQNIPIKTAKGRE 704 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397 +R I + ++ AD + IE R++A + ++ Sbjct: 705 -------------------------IRKAFIPTDDDFVILSADYSQIELRLIAAFSQDET 739 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF G D++ T ++ + + +VT D R + K A G Sbjct: 740 MMEAFNNGTDIHTATASKIYKIDIQEVTADMRRMAKTANF--------------AILYGS 785 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + +K +++ +++ ++ + S V Sbjct: 786 SAFNLSAQLKISTS------------------------------EAKKLIDSYYGEFSAV 815 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + +E+ Q Q GR + Sbjct: 816 KKFKDEMIQKARQ--------------------------FEYAETFLGRRRYLAGINGGA 849 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631 R + +Q + D++ M++ K ++L VHDE Sbjct: 850 MVSGQ----AERNA------VNSPIQGTAADMIKLAMIDIHRFMMREKMQSKMILQVHDE 899 Query: 632 IVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLK--AEGYESKRY 673 +V + ++ + LM + A LP++ E K + Sbjct: 900 LVFDAHKSEIDFLKENVIKLMEN----ALLLPVRIGVEAGVGKNW 940 >gi|298489723|ref|YP_003719900.1| DNA polymerase I ['Nostoc azollae' 0708] gi|298231641|gb|ADI62777.1| DNA polymerase I ['Nostoc azollae' 0708] Length = 982 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 104/709 (14%), Positives = 207/709 (29%), Gaps = 150/709 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD-------PV 52 + D ET + D ++ + H + Sbjct: 385 KPVAWDTETTALEP----------RDAALVGIGCCWGTGSDEAAYIPVGHKIGHNLQLDL 434 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALK 110 + L+ LEN + N+ F+R + K C +++ + T++ + L Sbjct: 435 VVSALRPILENANYPKTFQNAKFDRLIFK-CQGINL-VGVVFDTMLASYLINPDTTHNLS 492 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + G +L + K + YC V T + Sbjct: 493 DLSLR--------NLGLQLTEYNDIVTK-TGKKELQKNIADIGIDIVAYYCGTQVYATFQ 543 Query: 171 IFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + +L EQ L + + G ++ + L+Q ++ E KL+ Sbjct: 544 LVDKLRCELNKTPDLAKLLVEVEQPLEAVLAEMEYTGVRINSSYLQELSQQLESELAKLE 603 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLT--PQ 272 + + + ++L LF + GL + +T L +++ Sbjct: 604 IQATEI-ASEKFNLDSPKQLSYILFDKLGLSTKYSRKIQTGYSTDAATLEKLQEVDNTGF 662 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + R +S+ ++ L ++ RL A+ TGR S QN+P Sbjct: 663 VDAIIEYR-TSSKLKSTYVDALPALVHPQSQRLHTDFNQ-TATSTGRLSSSNPNLQNIPI 720 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + S +R + G +V AD + IE R+LA Sbjct: 721 RTA-------------------------FSRQIRKAFLPESGWLMVAADYSQIELRILAH 755 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ E ++A++ ED++ T F +VT ++R K + + Y G+ Sbjct: 756 LSQEPVLVQAYKQNEDIHTVTAKLVF--EKDEVTSEERRFAKTINFGVIYGMGSLK---F 810 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A +TG++ E + + +++ + Sbjct: 811 ARSTGVD--KANANEFIRRFNERYPQVFAYLEKVKKEAISQGYVETI------------- 855 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 +RR + + Sbjct: 856 ----------------------------LGRRRYFDFTSKSLKELKG---------ISLE 878 Query: 572 DVGNNRSY-LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVL 626 D+ +R L L R +Q S DI+ M+ + ++L Sbjct: 879 DIDLSRLKNLGAYNAGLLRSAANAP------IQGSSADIIKIAMVQLHEVLRNYQARLLL 932 Query: 627 TVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 VHDE+V E P + + +M + S +PL + + Sbjct: 933 QVHDELVFEVPPQEWGELQLQIKSVMENAMS--LSVPLVVDVRAGDNWM 979 >gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134] gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134] Length = 941 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 104/703 (14%), Positives = 193/703 (27%), Gaps = 161/703 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------------- 50 ID ET S + ++ + + H Sbjct: 362 AIDTETTSLDPML----------AQLVGISLSVEPGEACYIPVGHRGPDVAGMENNGQLS 411 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--S 107 + ++ LE+ + N ++ V + + T++ + Sbjct: 412 RDTVLARMRAWLEDDSKPKLGQNIKYDIHVFANH-GVTLCGVA-QDTMLESYVLASHRNH 469 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 + ++ E L L + E + EY D V Sbjct: 470 GMDSLAERL------------LNLKTITYEEVCGKGASQIGFDQIDLARATEYAAEDADV 517 Query: 168 TREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 T + +++ P E + + Q I G +D + + Sbjct: 518 TLRLHRKMFPQVSAAAGLRRVYEEIEIPVSVVLQKIERNGVLIDAERLAAQSAELGQRML 577 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQ 272 L+Q + +++ LF + L + T +T + VL + P Sbjct: 578 SLEQAAYDAAGQP-FNLGSPKQIGEILFNQMKLPVVKKTASGAPSTDEEVLQKLAEDYPL 636 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + + R ++ + L + +N + T + TGR + QN+P Sbjct: 637 PKLLLDYR-GLAKLKSTYTDKLPKMVNPNTGRVHTSYGQATAVTGRLASTEPNLQNIPVR 695 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +R IAS G +V AD + IE R++A + Sbjct: 696 TEEGRR-------------------------IREAFIASPGSVIVSADYSQIELRIMAHI 730 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ L+AF GED++ T + F V V+ +QR KV+ L Y A Sbjct: 731 SGDENLLRAFANGEDIHRATASEIFGVDREAVSSEQRRYAKVINFGLIYGMSA-----FG 785 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + L + A + + + ++ E + G Sbjct: 786 LASNLGIEREAAKHYIDRYFMRYPGVAQYMEDTRQTAREQGYVETVFGR----------- 834 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 LW + SG + Sbjct: 835 ------RLW-----------------------------------LPDINGGSGPRRQAAE 853 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQA-VSRDILAEGMMNATKAGYDIVLTVHDE 631 + + T L KL+ VQ + RD + ++VL Sbjct: 854 RAAINAPMQGTAADLI-------KLSMIAVQGWLERD--KLQTRQIMQVHDELVL----- 899 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P + L LM S +PL AE + Sbjct: 900 ---EVPQDELDVVKTRLPELMCSVAQ--LRVPLVAEVGSGANW 937 >gi|291615288|ref|YP_003525445.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1] gi|291585400|gb|ADE13058.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1] Length = 929 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 105/697 (15%), Positives = 204/697 (29%), Gaps = 154/697 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53 + +D ET +T ++ +F + H H Sbjct: 356 VSLDTETTGLDGMT----------AQLVGISFSIEAHQAAYLPLAHHYPGAPDQLGREHA 405 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKA 111 Q LK LE+ + N +++ + + TL+ + P + Sbjct: 406 LQKLKHWLESPAHKKLGQNLKYDQHIFANH-GIAFAGIA-EDTLLQSYVLESHKPHEMGN 463 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + G ++ + + Y D +T ++ Sbjct: 464 LALRH--------LGLSTVSY----ADVVGKGAKQIGFDQVDLETATRYAAEDADITLQL 511 Query: 172 FKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L P E + + + G +D A+ + + ++ +++++ Sbjct: 512 HQTLSPQLQGRLDAVYRQIELPVREVLFKMERNGVLIDSAMLGRQSHELGLKLNEIEKQA 571 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 + ++L LF + L ++ T + T + VL P + Sbjct: 572 FEAAGQP-FNLNSPKQLSEILFDKLQLPVKKKTPSGTPSTDEEVLQELALDYPLPKLLLE 630 Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R ++ + L + +N GR+ + A TGR + QN+P + Sbjct: 631 YR-GMAKLKSTYTDKLPQMVNAKTGRVHTSYAQAVA-VTGRLASSDPNLQNIPIRTPEGR 688 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R I G ++V AD + IE R++A ++G++ Sbjct: 689 R-------------------------IREAFITPAGSRIVSADYSQIELRIMAHLSGDEG 723 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 LKAF GED++ T A F+VA V+ +QR KV+ L Y A L Sbjct: 724 LLKAFAAGEDIHRATAAEVFSVALDAVSSEQRRYAKVINFGLIYGMSA-----YGLAAQL 778 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 N+ T A + + + + +E + + G Sbjct: 779 NIETSAAKQYIDLYFARYPGVKRYMDSTREQAKAQGFVETWFGR---------------- 822 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 LW +G + Sbjct: 823 -RLWLPEINGA-----------------------------------NGMRRQAAERAAIN 846 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 + + T L + VQ D + K +++ VHDE+V E P Sbjct: 847 APMQGTAADLIKLAMIA-------VQ----DW-----LETEKLATKLIMQVHDELVLEVP 890 Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + LM + +PL+ E + Sbjct: 891 QGELARVKDKVRELMCNVAE--LKVPLEVGMGEGGNW 925 >gi|316936191|ref|YP_004111173.1| DNA polymerase I [Rhodopseudomonas palustris DX-1] gi|315603905|gb|ADU46440.1| DNA polymerase I [Rhodopseudomonas palustris DX-1] Length = 1027 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 97/707 (13%), Positives = 193/707 (27%), Gaps = 168/707 (23%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--------------------VM 53 + L + A + H Sbjct: 438 VALEAVATSIDPMQAELTGVALALGPNDACYIPLGHKQAGDGDGLFAAGLAPDQLGTRDA 497 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALK 110 LK LE+ + V F +L + + +++ + L Sbjct: 498 LDALKPVLESAGIAKVGFAIKFAAVLLAQH---GLTLRNIDDPQLMSYALDAGRGSHGLD 554 Query: 111 AVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 A+ E+ L + + E + Y V+ Sbjct: 555 ALSESNLGHTLHTLTEL-------------TGTGKNKIGLDQVGIDRATAYAAERADVSL 601 Query: 170 EIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L+P + E+ L + + RG +D + L+ +++ Sbjct: 602 RLARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLSSDFAQTAARIE 661 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 E+ L + + ++L LF + GL T+ +T +VL + + + Sbjct: 662 AEIRELAGEDI-NIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPK 720 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + S+ + L ++ T L A+ TGR S QN+P + Sbjct: 721 KILEWRQVSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTED 780 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + +R +A+ G KLV AD + IE R+L+ +A Sbjct: 781 GRK-------------------------IRRAFVATPGHKLVSADYSQIELRLLSEVADV 815 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 KAF+ G D++ T + F V + + R K + Sbjct: 816 PALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINF--------------GIIY 861 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + K + ++ Sbjct: 862 GIS------------------------------AFGLANQLGIPREEAGAYIKRYFERFP 891 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + +E +G GR Y D+ Sbjct: 892 GIRAYMDETRDF---CRAHGYVTTL-----------------------FGRKCHYPDIKA 925 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629 + + R Q + DI+ M+ K ++L VH Sbjct: 926 SNP---SIRAFNERAAINARL------QGSAADIIRRAMVRMEDALAEKKLSAQMLLQVH 976 Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 DE++ E P+ + ++ +M P+ +PL+ + + + Sbjct: 977 DELIFEVPEAEVEATLPVVRSVMQDAPFPAVILNVPLQVDARAADNW 1023 >gi|90415433|ref|ZP_01223367.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207] gi|90332756|gb|EAS47926.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207] Length = 926 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 114/701 (16%), Positives = 194/701 (27%), Gaps = 155/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 + +D ET S + ++ + HD Sbjct: 348 DLVAVDTETTSLDYMR----------AKLVGISLSTAPGEACYIPFAHDYMGAPEQLQPE 397 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LK 110 + LK LE+ V N ++ +VL + + T++ + ++ Sbjct: 398 FALEKLKPYLEDPAFPKVGQNLKYDMSVLAQH-GISLRGIT-FDTMLESYVLDSVASRHD 455 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 AL G+E I K ++ A G Y D +T Sbjct: 456 MDSLALNY------LGEETI----KFADVAGKGAAQLTFNQVALDQAGPYAAEDADITLR 505 Query: 171 IFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L P E L + I G VD L +Q + +L+ Sbjct: 506 LHQTLWPRVAAEPTLTKVFEEIELPLVPVLSRIERTGALVDDTLLFQQSQELSARLGELE 565 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQ 275 E L + ++L LF + + + T +T + VL P Sbjct: 566 TEAWELAGQQ-FNLASPKQLGEILFEKLQIPVLKKTAKGAPSTKEEVLQELALDYPLPKV 624 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R ++ + L +NS GR+ + G + TGR S QN+P S Sbjct: 625 LLEHR-GLAKLKSTYTDKLPTMINSVTGRIHTSYHQSG-TATGRLSSSDPNLQNIPIRSA 682 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 VR +A+ G KLV AD + IE R++A ++ Sbjct: 683 EGRR-------------------------VRQAFVAAPGCKLVAADYSQIELRIMAHLSE 717 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L AF G+D++ T A F V +VT DQR K + L Y A Sbjct: 718 DPSLLAAFSAGQDIHRATAAEVFGVENEEVTIDQRRSAKAINFGLIYGMSA-----FGLA 772 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L +N + +N+ ++ + E + Sbjct: 773 RQLGINRKQAAEYIELYFTRYPGVQNYMNNIRHSAAEQGFVETVF--------------- 817 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +R +P + R Sbjct: 818 --------------------------GRRLYLPEINASNGM----------RRQAAERTA 841 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL-AEGMMNATKAGYDIVLTVHDEIV 633 N T + E D+ M +V Sbjct: 842 INAPMQGTAADIIKLAMINVHNWLET------SDLTSKIIM-QVHDE-----------LV 883 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P+++ L LM S +PL + + Sbjct: 884 LEVPESEMEEVQKGLNDLMESAAELL--VPLVVDIGVGDNW 922 >gi|56751326|ref|YP_172027.1| DNA polymerase I [Synechococcus elongatus PCC 6301] gi|56686285|dbj|BAD79507.1| DNA polymerase I [Synechococcus elongatus PCC 6301] Length = 964 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 111/701 (15%), Positives = 221/701 (31%), Gaps = 154/701 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDP-------VMPQVL 57 D ET ++ + + P + H+ + L Sbjct: 382 DTETTDLDP----------RLAQLVGIGCAWGEEPDQLAYIPLGHEEGEQLPLQTVLTAL 431 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 + LE+ N+ F+R +L +++ T++ + +L A+ + Sbjct: 432 RPILESDRHPKALQNAKFDRLIL-RHQGIELA-GVVFDTMLASYLLNPSLGHSLDALADR 489 Query: 116 -LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 LKL ++ + + K + A +YC DV V + + Sbjct: 490 WLKLQTRSYSDL----------------VPKGKTIAQVAIAAVAQYCGSDVHVVQRLIPL 533 Query: 175 LE------PLSSKEQELWY-----LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+ P E + + DRG +D L++ + E +L+ Sbjct: 534 LKAGIAESPALQFLLETVELPLEAVLAEMEDRGIRIDEGYLAELSEHLKGELDRLEGAAH 593 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFN 278 +L + ++L LF + GL+++ T+ +T VL + P + Sbjct: 594 TLAGDR-FNLGSPKQLSELLFEKLGLNVKKSRKTKTGYSTDAAVLEKLQGDHPIIDLILE 652 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + ++ ++ L + +DGR+ + TGR S QN+P + Sbjct: 653 H-CTLAKLKSTYVDALPSLVAADGRIHTDFNQAV-TATGRLSSSNPNLQNIPIRTE---- 706 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 S +R + EG L AD + IE R+LA ++ E Sbjct: 707 ---------------------FSRQIRKAFLPREGWLLAAADYSQIELRILAHLSQEPVL 745 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+A+ G+D++ T + F ++T ++R IGK++ + Y GA+ F Sbjct: 746 LEAYRQGDDVHRLTASLLF--DREEITSEERRIGKIINFGVIYGMGAQRF-----ARETG 798 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 +T + + + + + ++ + +G + + Sbjct: 799 SSTKEAQGFIDRFYDRYPRVFTYLQSLERQAIARGYVETVLGR------RRYFD------ 846 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 +D L S+ + +R Sbjct: 847 ---------------------------------FEDTGLQKLRGSDPESIDLDKIRPSRF 873 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634 QL R +Q S DI+ M+ ++L VHDE+V Sbjct: 874 -----EAQLLRAAANAP------IQGSSADIIKVAMVQLQALLQSYQARMLLQVHDELVL 922 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E P + + + + M +PL E + + Sbjct: 923 ELPPEEWDSLAPQIQQTMEQAVQ--LTVPLAVELHAGHNWM 961 >gi|78213483|ref|YP_382262.1| DNA polymerase I [Synechococcus sp. CC9605] gi|78197942|gb|ABB35707.1| DNA polymerase I [Synechococcus sp. CC9605] Length = 986 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 107/712 (15%), Positives = 206/712 (28%), Gaps = 161/712 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD----------- 50 + D ET ++ + + + H Sbjct: 392 VAFDTETTDLNPFR----------AELVGIGICWGEDLDALAYIPLGHKGSEDSIPEQLS 441 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--S 107 + L L +++ N+ ++R +L + + I TL+ Sbjct: 442 LETVLTALAPWLASSNHPKTLQNAKYDRLILLRH-GIALE-GVVIDTLLADYLRDASAKH 499 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L+ + E + + L + + YC DV V Sbjct: 500 GLELMAER---------------EFGFQPTSFTDLVGKKQTFADVPLEPASLYCGMDVHV 544 Query: 168 TREIFKRLEPLSSKE------------QELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 TR + L Q L + + G +DV L++ + Sbjct: 545 TRRLALLLRHQLETMGPQLLPLLEQVEQPLEPVLARMESTGIRIDVPYLQGLSEEMGSTL 604 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270 +L+ + ++ + ++L LF GL + T+ +T VL Sbjct: 605 QQLESDAKAAAGVD-FNLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVLEKLGNDH 663 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P V ++R+ S+ ++ L + + GR+ + TGR S QN+ Sbjct: 664 PVVPLVLDHRV-LSKLKSTYIDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQNI 721 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P + S +R + EG L+ AD + IE R+L Sbjct: 722 PVRTE-------------------------YSRRIRKAFLPQEGWTLLSADYSQIELRIL 756 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 ++GE+ +A+ G+D++ T + +V+ D+R +GK + + Y GA Q Sbjct: 757 THLSGEKVLQEAYRGGDDVHALTARLL--LDKDEVSPDERRLGKTINFGVIYGMGA---Q 811 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 + A TG++ + + + F + + +G Sbjct: 812 RFARETGVSQSE--AKEFLVKYKQRYPKVFAFLELQERLALSRGYVETILG--------- 860 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 R P + + L+ P Sbjct: 861 ----------------------------------RRRPFHFDRNGLGRLLGKDPL----- 881 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------ 623 ++ + + Q R +Q S DI+ M+ A Sbjct: 882 --EIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQDALLRQGLPAQ 933 Query: 624 IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE+V E ++ M +PL E + Sbjct: 934 LLLQVHDELVLEVAPDALETTRDLVVRTMEQAFE--LSVPLVVETGVGANWM 983 >gi|170077895|ref|YP_001734533.1| DNA polymerase I [Synechococcus sp. PCC 7002] gi|169885564|gb|ACA99277.1| DNA-directed DNA polymerase I [Synechococcus sp. PCC 7002] Length = 973 Score = 375 bits (964), Expect = e-101, Method: Composition-based stats. Identities = 116/700 (16%), Positives = 209/700 (29%), Gaps = 148/700 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGF--DDHPVELWDCVH-------DPVMPQVL 57 D ET +V ++ + D + H + Q L Sbjct: 385 DTETTGLDP----------REVDLVGIGCCWGRDPGNIAYIPIAHHNGNQLEKTQIFQAL 434 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K LE V N+ F+R + + + T++ + L + Sbjct: 435 KPILETEKYPKVFQNAKFDRAIFA-HQGISLA-GVVFDTMLASYVLHPEMKHNLTDLSLR 492 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L K L + + EYC DV T + ++L Sbjct: 493 Y------------LGNIIAKSYKDLGLTKKQ-TIADLEISVAAEYCGLDVYTTYLVCQKL 539 Query: 176 E------PLSSKEQELWY-----LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + P K E + + + G +D L + + + T L+ + + Sbjct: 540 KVELKDYPDLEKLLEKVETPLEPVLCAMENTGIRIDQDYLQQLAEELGADLTDLEIKAYN 599 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTPQAIQVFNN 279 + ++L LF + GL+ + +T VL + P + Sbjct: 600 -AADERFNLNSPKQLGEILFEKLGLNTKKTRKTKTGYSTNHAVLEKLQGDHPIIDYILEY 658 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ ++ L ++ T + TGR S QN+P + Sbjct: 659 R-TLAKLKSTYIDALPTLVSPKTDRIHTDFNQTLTSTGRLSSSNPNLQNIPVRTE----- 712 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 S +R I E LV AD + IE R+L ++ E L Sbjct: 713 --------------------FSQRIRRAFIPKENWVLVAADYSQIELRILTHLSQEPILL 752 Query: 400 KAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +A++ GED++ T F+ P VT +R IGK++ + Y GA Q+ A G++ Sbjct: 753 QAYQAGEDVHRVTAQMIFDRDSPQAVTAAERRIGKIINFGVIYGMGA---QRFAREAGVS 809 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + E + + +++ + R+ +S Sbjct: 810 KEEGRA--FIDRYHERYAKVFEYLELVKKQAIAQGYVSTILQR---------RRNFDFIS 858 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 EL + + I D+ + Sbjct: 859 NCLIELKGSDPKAI---------------------------------------DLDSLDY 879 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634 N QL R +Q S DI+ M+ + ++L VHDE+V Sbjct: 880 AYN--DAQLLRAAANAP------IQGSSADIIKVAMIQIHELLKDYQARLLLQVHDELVF 931 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P + S + M +PL + + K + Sbjct: 932 EMPPEEWEELGSKIKTTMEQAVP--LSIPLVVDIHCGKNW 969 >gi|123968848|ref|YP_001009706.1| DNA polymerase I [Prochlorococcus marinus str. AS9601] gi|123198958|gb|ABM70599.1| DNA polymerase I [Prochlorococcus marinus str. AS9601] Length = 976 Score = 375 bits (964), Expect = e-101, Method: Composition-based stats. Identities = 111/712 (15%), Positives = 202/712 (28%), Gaps = 160/712 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD---------- 50 + +D ET S + D ++ + + H Sbjct: 382 IVSLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQTKKETPDQLS 431 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPS 107 + L+ +E+ NS F+R + LD+ TL+ Sbjct: 432 IEDVFSKLRNWIEDPKKEKALQNSKFDRQIFFNH-GLDLK-GVTFDTLLADYLLNNQEKH 489 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L + L K + + +NK YC DV + Sbjct: 490 GLSEISFRL---------------FGFKPPSFKETVGKNKDFSFVDIDEASIYCGYDVFL 534 Query: 168 TREIFKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 T +I K + E L + + G +D+ L++ + Sbjct: 535 TFKIVKIFKESFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTL 594 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270 ++ ++ L + ++L LF + L + T+ +T VL Sbjct: 595 EDIESKVYEL-ADESFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEH 653 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 + +R S+ ++ L +N GR+ A+ TGR S QN+ Sbjct: 654 EIIQHLIKHR-TLSKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNI 711 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P + S +R + + KL+ AD + IE R+L Sbjct: 712 PVRTE-------------------------FSRRIRKAFLPEKNWKLLSADYSQIELRIL 746 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A E+ + AF +D++ T F +++ D+R +GK + + Y G K Sbjct: 747 AHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMGIKK-- 802 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 A +TG++ E + F + G E Sbjct: 803 -FARSTGVSTPE--AKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFD- 858 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 K L+ P Sbjct: 859 ------------------------------------------KNGLGRLLGKDPY----- 871 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623 ++ + Q R +Q S DI+ M+ K Sbjct: 872 --EIDLQAARRAGMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKFTEMNVPAK 923 Query: 624 IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE++ E PD+ E ++ M +PL + + Sbjct: 924 MLLQVHDELLFEVEPDSLEITTKLVKKTMEDCVK--LNVPLLVDVGIGDNWM 973 >gi|318042056|ref|ZP_07974012.1| DNA polymerase I [Synechococcus sp. CB0101] Length = 1020 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 109/721 (15%), Positives = 202/721 (28%), Gaps = 171/721 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHD----------- 50 + +D ET S ++ + + P H Sbjct: 418 VALDTETTSLNPFR----------AELVGVGVAWGEGPADLAYIPIGHRVGSSGETPDLL 467 Query: 51 ---------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLA 100 + L L + N+ ++R +L +P+ + TL+ Sbjct: 468 SPPPAQLPLDQVLTALAPWLGSAQHPKALQNAKYDRLILLRH---GLPLEGVVMDTLLAD 524 Query: 101 RSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 L+ + + ++ L + Sbjct: 525 YLRDANAKHGLELLAQR---------------NFGFLPTSYSELVPKGADFSAVPIEQAA 569 Query: 159 EYCKGDVTVTREIFKRLEPLSSK------------EQELWYLDQTINDRGYCVDVALAHT 206 YC DV VTR + L + E L + + G +D A Sbjct: 570 LYCGMDVHVTRRLAPLLRAQLEELGPQLPQLLDRVELPLEPVLALMEATGIRIDTAYLAE 629 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQR 261 L+ + +L+ + ++ + ++L LF GL + T+ +T Sbjct: 630 LSSELGQTLQRLEADAKAAAGTD-FNLASPKQLGELLFDTLGLDRKKSRKTKTGWSTDAA 688 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWS 320 VL + P V +R S+ ++ L M + GR+ + TGR S Sbjct: 689 VLEKLEDAHPVVSLVLEHR-TLSKLKSTYVDALPALMEPETGRVHTDFNQAV-TATGRLS 746 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380 QN+P + S +R + G +L+ AD Sbjct: 747 SSNPNLQNIPIRTE-------------------------FSRRIRKAFLPEAGWQLISAD 781 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA ++GE+ ++A++ G+D++ T + +V+ D+R +GK + + Sbjct: 782 YSQIELRILAHLSGEEVLVQAYQQGDDVHALTARLL--LEKDEVSADERRLGKTINFGVI 839 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y GA Q+ A TG++ + + + F + + +G Sbjct: 840 YGMGA---QRFARETGVS--QTQAKEFLSKYKQRYPKVFAFLELQERLALSRGYVETILG 894 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + K+ L + Sbjct: 895 RRRPFAFD-------------------------------------PSGLGRHLGKDPLEI 917 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK- 619 L R Q R +Q S DI+ M+ Sbjct: 918 DLDIARR-------------GGMEAQQLRAAANAP------IQGSSADIIKLAMVQLHHQ 958 Query: 620 -----AGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E L M +PL E + Sbjct: 959 LAASGLPARLLLQVHDELVLEAAPEALEAVRTLTRETMERAVE--LSVPLLVETGVGPNW 1016 Query: 674 R 674 Sbjct: 1017 M 1017 >gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA] Length = 933 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 105/700 (15%), Positives = 202/700 (28%), Gaps = 151/700 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 D ET S LT ++ +F HD Sbjct: 353 KIFAFDTETDSLDVLTTN----------LVGLSFATAPSVAAYIPVGHDYLDAPDQLDRD 402 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + LK LE+ ++ V N +++ V+ +++ T++ + Sbjct: 403 DVLAKLKPVLEDANLLKVGQNLKYDQGVMARY-GIELQGIA-FDTMLESYDLDSVAGRHD 460 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + ++ E L + E ++ A Y D VT Sbjct: 461 MDSLAERH------------LNHKTITFEEIAGKGKSQLTFNQIALEQATPYAAEDADVT 508 Query: 169 REIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 ++ +L P + L + + G +D + +Q + + + Sbjct: 509 LQLHLKLWPQLEKEAGLKKVFTDIDMPLVPVLSRMERTGVLIDSNILGKHSQELAIRLDE 568 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+++ + ++L+ LF + L + T +T + VL+ + + Sbjct: 569 LEKKAHEAAG-EPFNLSSPKQLQAILFEKQKLPVVKKTPGGAPSTNEEVLAELSEQGFEL 627 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + ++ + L + +N T + TGR S QN+P + Sbjct: 628 PTIILEHRGLAKLKSTYTDKLPQMINPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRN 687 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R IA +G K+V AD + IE R++A ++ Sbjct: 688 DEGRR-------------------------IRQAFIAPQGYKIVAADYSQIELRIMAHLS 722 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ L AF G+D++ T A F + VT +QR K + L Y A Sbjct: 723 GDKGLLTAFAAGKDIHRATAAEVFGLKLEDVTSEQRRSAKAINFGLIYGMSA-----FGL 777 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 LN+ + E + + ++ E + G + R Sbjct: 778 ARQLNIARGEAQRYMDLYFERYPGVLEYMERTRQQAAEQGYVETLDGRRLYLPEIHSRNG 837 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 R +A G A KR + + + ++ + Sbjct: 838 MRR-----KGAERAAINAPMQGTAADIIKRAMISVDAWLLQQKEPLVRM----------- 881 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 I+Q +V VH E V Sbjct: 882 ---------------------------IMQ-------------VHDE---LVFEVH-ESV 897 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + LM + A +PLK + + + Sbjct: 898 IE------QTVEKVRELMEQSLELA--VPLKVDVGTGENW 929 >gi|325267196|ref|ZP_08133863.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394] gi|324981359|gb|EGC17004.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394] Length = 984 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 199/703 (28%), Gaps = 164/703 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQ 55 + +D ET S + ++ + F H + Sbjct: 410 VIGLDTETTSLEPMK----------AQLVGISIAFGAGDAAYIPVAHTFAEQLDWTDIKS 459 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVG 113 L+ LEN + + N +++ V + + ++ + L + Sbjct: 460 SLQPFLENPQLGKIGQNMKYDQHVFANH-GIALQGIS-GDAMLASYIVESHLGHGLDELS 517 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 E L E+ + P EY D I + Sbjct: 518 ER------------WLQLPTITYESLCGKGAKQIPFADVPLDKAAEYACQDADFALRIEQ 565 Query: 174 RLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L +Q + + + G +D + + E +L+ E + Sbjct: 566 HLRTQMDDKQLAMYQELELPVAQVLFAMERNGVFIDSNELAQQSAQLGKELWQLENEAFA 625 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTE----TTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+ LF + GL + T +T + VL P + Sbjct: 626 LAG-KPFNLNSPKQLQDILFNQMGLPTKGIKKTAGGSYSTDESVLEKLADDFPLPKLILQ 684 Query: 279 NRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R ++ + L E + GR+ A TGR + QN+P + Sbjct: 685 HR-SLAKLKSTYTDKLPEMILPATGRVHTNYAQAVA-ITGRLASNNPNLQNIPIRTEQGR 742 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 VR A EG+ +V AD + IE R++A ++G+ Sbjct: 743 R-------------------------VRRAFCAPEGQMMVSADYSQIELRIMAHLSGDPT 777 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 AF+ ED++ T A F V P +T +QR K + G+ Sbjct: 778 LQAAFQNNEDVHRRTAAEVFGVPPEHITAEQRRYAKTIN--------------FGLIYGM 823 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A + ++ E K + +++ V Sbjct: 824 SSFGLAKALGIDNMS------------------------------AEMFIKRYFARYTGV 853 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +E + + GR L D+ + Sbjct: 854 AEYMERTKEQARS--------------------------LGYVETLFGRRLYLPDIHGSA 887 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631 R +Q + D++ M+ A +V+ VHDE Sbjct: 888 IRRAAAERAAINA----------PMQGTASDLIKRAMIKVQAALAAEQSSAQLVMQVHDE 937 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V + P+ + + L M+ +PL AE K + Sbjct: 938 LVLQVPEDELAHIKAQLPQWMSDVGEGVLAVPLLAEVGAGKNW 980 >gi|297537593|ref|YP_003673362.1| DNA polymerase I [Methylotenera sp. 301] gi|297256940|gb|ADI28785.1| DNA polymerase I [Methylotenera sp. 301] Length = 928 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 110/703 (15%), Positives = 201/703 (28%), Gaps = 160/703 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51 + D ET S +T ++ +F + HD Sbjct: 351 KLMCFDTETTSLDPMT----------AKIVGMSFSVEAGSAAYLPLKHDYFDAPEQLDFV 400 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 +K LEN + V N +++ VL + + T++ + + Sbjct: 401 ETLAKIKPILENAAIKKVGQNFKYDQHVLANH-GIALNGIA-HDTMLESYVFESHKTHGM 458 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 A+ E G + I+ E + ++ + EY D +T Sbjct: 459 DALAERH--------LGIQTISF----EEVAGKGAKQVTFNQVTVEVASEYAAEDADITL 506 Query: 170 EIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + + P E + TI G +D + + + + + L Sbjct: 507 QLHQAMYPQISTDAKLDFIYSQIEMPSSQILFTIERNGVLIDRDMLNIQSNEIGAKLVAL 566 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAI 274 + + L + ++L+ LF + G+ T + T + VL P Sbjct: 567 ENQAYELAGQP-FNLGSPKQLQEILFDKLGIKPTKKTPSGAPSTDEDVLQELALDHPLPK 625 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + R ++ + L + +N+ GR+ + A TGR + QN+P S Sbjct: 626 VLLEYR-GLAKLKSTYTDKLPKMINAQTGRVHTSYNQAVA-ITGRLASSDPNLQNIPVRS 683 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R IA +G +V AD + IE R++A ++ Sbjct: 684 AEGRR-------------------------IREAFIAPKGSHIVSADYSQIELRIMAHLS 718 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ L AF ED++ T A F V V +QR KV+ L Y A Sbjct: 719 KDEGMLAAFANNEDIHRHTAAEIFGVERENVDSEQRRYAKVINFGLIYGMSA-----FGL 773 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 LN+ A + + + +E + + + G Sbjct: 774 AQNLNIERGAAASYIERYFARYPGVREYMQNTREIAKQKGYVETYFGR------------ 821 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 LW + P+G + Sbjct: 822 -----RLW-----------------------------------VPEINSPNGTRRAGAER 841 Query: 574 GNNRSYLNTTTRQLTREYTYG--GKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 + + T L + L +Q M +VL Sbjct: 842 AAINAPMQGTAADLIKLAMIAVDKWLRHEKLQ------TKLIM-QVHDE---LVL----- 886 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E PD + L LM + +PL AE + Sbjct: 887 ---EVPDNELELVKQKLPELMQNVAK--LDVPLLAEVGVGSNW 924 >gi|126658596|ref|ZP_01729743.1| DNA polymerase I [Cyanothece sp. CCY0110] gi|126620183|gb|EAZ90905.1| DNA polymerase I [Cyanothece sp. CCY0110] Length = 583 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 103/681 (15%), Positives = 207/681 (30%), Gaps = 139/681 (20%) Query: 26 EDVCVILFAFGFDDHPV--ELWDCVHDP-------VMPQVLKEALENTDVTIVAHNSYFE 76 ++ + + P H + L+ LE+ + V N+ F+ Sbjct: 7 RQADLVGIGCCWGNQPTDIAYIPIGHKQGNQLKKQKVLDSLRTILESKNYPKVFQNTKFD 66 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIARFC 134 R + K +++ T++ + L + E L Sbjct: 67 RLIFK-HQGINLD-GVVFDTMLASYVLHPEKSHKLSELCEQY------------LEGITS 112 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQ 183 + + + EYC D T + + L+ EQ Sbjct: 113 QNYKELGIGKKQ-TIADLEIDKVAEYCGMDAYATFLLVEPLKNELKQVSSLEKLLLEVEQ 171 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 L + + D G +D L++ ++ + L+++ + G + ++L L Sbjct: 172 PLEAVLSIMEDTGILIDTEYLGELSKQLEKDLLILEEKAYEVAGGK-FNLGSPKQLGEIL 230 Query: 244 FLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 F + L+ + T+ +T L K P + R S+ ++ L E + Sbjct: 231 FEKLELNRKKSRKTKTGYSTDHATLDKLKGDHPIIDYILEYR-TLSKLKSTYIDALPELV 289 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 ++ + T + TGR S QN+P + Sbjct: 290 DTKTKRIHTNFNQSVTATGRLSSSNPNLQNIPIRTE------------------------ 325 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 S +R I + LV AD + IE R+LA ++ E L A++ ED++ T F Sbjct: 326 -FSRQIRQAFIPQKDWLLVSADYSQIELRILAHLSQEPVLLNAYQNTEDVHTVTAKLLF- 383 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 ++T +R +GK + + Y G++ F + A + N + + Sbjct: 384 -EKEKITSQERNLGKTINFGVIYGMGSQRFAREA-----GVTAAEGKEFINKYRQRYAKV 437 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 + M++ + +G + + + + + Sbjct: 438 FEYLESMKKEAIANGYVTTILGR------RRYFNFFD---------DNLYRFRGHDPQT- 481 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 + N+ +N QL R Sbjct: 482 ----------------------------------IDLNQLNINYNDSQLLRAAANAP--- 504 Query: 599 ENIVQAVSRDILAEGMMNATK----AGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTS 653 +Q S DI+ M+ + +++L VHDE+V E P + + M + Sbjct: 505 ---IQGSSADIIKIAMVKIQEILNHCQANLLLQVHDELVFEIPVKEWEKLENKIKETMEN 561 Query: 654 NPSWAKGLPLKAEGYESKRYR 674 +PL E + K + Sbjct: 562 AVK--LTIPLVVEIHAGKNWM 580 >gi|307295121|ref|ZP_07574963.1| DNA polymerase I [Sphingobium chlorophenolicum L-1] gi|306879595|gb|EFN10813.1| DNA polymerase I [Sphingobium chlorophenolicum L-1] Length = 928 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 107/710 (15%), Positives = 196/710 (27%), Gaps = 169/710 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------- 52 + +D ET D+ C C ++ + + H Sbjct: 346 VAVDTET----DMLDCVSCA------LVGVSLAVGPNAACYVPVGHGGKDMFAEKPDQLP 395 Query: 53 ---MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109 + LK LE+ V + N ++ TVL+ I I + T+V++ +L Sbjct: 396 LALVLAKLKPLLEDDSVLKIGQNLKYDITVLRRH---GIEIAPYDDTIVMSFDLDAGQSL 452 Query: 110 KAVGEALKLSSQ-KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + K I+ + EY D VT Sbjct: 453 AG----HGMDEAAKTHLNHICISF----KDVCGTGKSQISFAEVPLDKATEYAAEDADVT 504 Query: 169 REIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++K + + ++ L + + G VD L+ L Sbjct: 505 LRLWKLFKTRIANEGATRVYELVDRPLVSVIAKMEHEGIKVDREALSRLSAEFTAGIAAL 564 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKKLTPQAI 274 + E+ L + ++L LF + G +T +L K + Sbjct: 565 ETEIHGLAGQP-FAIGSTQQLGAILFDKMGYKGGKKGKSGAYSTDVTILEQLKVQGAEIA 623 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + S+ + L +N D T L ++TGR S QN+P + Sbjct: 624 GKVLDWRQLSKLKSTYTDALQAQINRDTSRVHTSYSLSGAQTGRLSSTDPNLQNIPIRTE 683 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R +A G ++ AD + IE R+ A MA Sbjct: 684 VGR-------------------------QIRHAFVAEPGNVILAADYSQIELRLAAHMAD 718 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +AF GED++ T + F +V +D R K + A+ Y + Sbjct: 719 VPALKEAFANGEDIHAATAQQLFG----EVNRDTRGRAKTINFAILYG-----ISRWGLA 769 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L ++ + + + ++ Sbjct: 770 GRLEISA---------------------------------------DEAQDMISRYYERF 790 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +S + + GR + + Sbjct: 791 PGISLYITDTIEKARS--------------------------KGYTETLFGRKTWFPRIK 824 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLT 627 + + R +Q S DI+ M A ++L Sbjct: 825 ASVQHERQ---GAERAAINAP------IQGTSADIIKRAMARMGPALAAEGLHDVKMLLQ 875 Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRYR 674 VHDE+V E P+ D A +++ +M P +PL E + Sbjct: 876 VHDELVFELPEGDVEQASAVIRRVMEGAAEPIVKLSVPLGVEIGHGPSWG 925 >gi|126696667|ref|YP_001091553.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301] gi|126543710|gb|ABO17952.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301] Length = 976 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 112/712 (15%), Positives = 203/712 (28%), Gaps = 160/712 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD---------- 50 + +D ET S + D ++ + + H Sbjct: 382 IVSLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQIKKETPNQLS 431 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPS 107 + L+ +E+ NS F+R + LD+ TL+ Sbjct: 432 IEDVFSKLRTWIEDPKKEKALQNSKFDRQIFFNH-GLDLK-GVTFDTLLADYLLNNQEKH 489 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L + L K + + +NK YC DV + Sbjct: 490 GLSEISFRL---------------FGFKPPSFKETVGKNKDFSFVDINEASIYCGYDVFL 534 Query: 168 TREIFKRLEPLS------------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 T +I K + E L + + G +D+ L++ + Sbjct: 535 TFKIVKIFKERFSKEKDELIKLFKEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTL 594 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270 ++ ++ L + ++L LF + L + T+ +T VL Sbjct: 595 EDIENKVFEL-ADENFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDALVLERLVDEH 653 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 + +R S+ ++ L +N GR+ A+ TGR S QN+ Sbjct: 654 EIIQHLIKHR-TISKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNI 711 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P + S +R + + KL+ AD + IE R+L Sbjct: 712 PVRTE-------------------------FSRRIRKAFLPEKNWKLLSADYSQIELRIL 746 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A E+ + AF +D++ T F +++ D+R +GK + + Y G K Sbjct: 747 AHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMGIKK-- 802 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 A +TG++ E + F + G E Sbjct: 803 -FARSTGVSTPE--AKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK 859 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + K+ + L S R Sbjct: 860 -------------------------------------NGLGRLIGKDPYEIDLQSARR-- 880 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623 Q R +Q S DI+ M+ K Sbjct: 881 -----------AGMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKFIEMNFPAK 923 Query: 624 IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE++ E PD+ E ++ M + +PL + + Sbjct: 924 MLLQVHDELLFEVEPDSLEITTKLVKKTMENCVK--LNVPLLVDIGIGDNWM 973 >gi|330501084|ref|YP_004377953.1| DNA polymerase I [Pseudomonas mendocina NK-01] gi|328915370|gb|AEB56201.1| DNA polymerase I [Pseudomonas mendocina NK-01] Length = 960 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 103/697 (14%), Positives = 193/697 (27%), Gaps = 148/697 (21%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53 + D ET S A+ ++ +F H + Sbjct: 381 IAFDSETTS----------IDAQQAQLVGLSFAVKAGEAAYIPLAHSYMGVPQQLDRDAV 430 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 LK LE+ V ++ ++ VL + T++ + + Sbjct: 431 LNALKPILEDPAKAKVGQHAKYDINVLANASTPIMVQGVAFDTMLESYVLDSTAT----- 485 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + K L + E + + A G Y D VT + + Sbjct: 486 ---RHDMDSLAL-KYLNHSTIRFEDIAGKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQ 541 Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L E L + I G VD L + + + +L+++ Sbjct: 542 ELWGRLEAIPSLAKVLRDIEIPLVPVLARIERNGALVDAKLLGEQSVELGEKLVELERKA 601 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278 + + ++L L+ + G + T +T + VL+ + + +V Sbjct: 602 FEIAG-EEFNLASPKQLGVILYEKLGYPVISKTAKGQPSTAEAVLAELAEQDYELPKVLM 660 Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 S+ + L E +N GR+ + A+ TGR S QN+P + Sbjct: 661 QYRSLSKLKSTYTDKLPEQINPRTGRIHTSYHQAVAA-TGRLSSSDPNLQNIPIRTAEGR 719 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R +A +G KL+ AD + IE R++A +A ++ Sbjct: 720 R-------------------------IRQAFVAPKGYKLMAADYSQIELRIMAHLAKDEG 754 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF D++ T A F V QVT DQR K + L Y A + Sbjct: 755 LLDAFRYDLDVHKATAAEVFGVPLDQVTSDQRRKAKAINFGLIYGMSA-----FGLAKQI 809 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 ++ + + + + E + G ++ + Sbjct: 810 DVERKEAQAYIDRYFARYPGVLTYMESTRAQAAEQGYVETVYGR--RLYLPEIHAQNQAM 867 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + +A G A KR + + +D Sbjct: 868 RK---GAERAAINAPMQGTAADIIKRAMIAVDGWLQDSGID------------------- 905 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 +R I + +VL E Sbjct: 906 ----------------------------ARII-----LQVHDE---LVL--------EVR 921 Query: 638 DTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + L LM+ +P+ E + Sbjct: 922 EELINEVSAKLKSLMSGAAD--LDVPMLVEVGVGANW 956 >gi|253987782|ref|YP_003039138.1| DNA polymerase I [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638660|emb|CAR67279.1| dna polymerase I polA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779232|emb|CAQ82392.1| dna polymerase I polA [Photorhabdus asymbiotica] Length = 929 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 106/695 (15%), Positives = 204/695 (29%), Gaps = 147/695 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S LT ++ +F HD + Sbjct: 352 AFDTETDSLDTLT----------ANLVGMSFAITAGDAAYLPLGHDYLGAPEQLDRDAVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE++++ + N F+ VL +++ + T++ + + + Sbjct: 402 AALKPLLEDSNLLKIGQNIKFDCGVLVRY-GIELQGIAY-DTMLESYVLNSVAGMG---- 455 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + E L + E ++ Y D VT ++ + Sbjct: 456 --RHDMDSLAERH-LNYKTTTFEEIAGKGKNQLTFNQVPVEQAAMYAAEDADVTLQLHQV 512 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P E L + + G ++ + ++ + V +L++E Sbjct: 513 IWPQLEKVPALEKVFLETEMPLIMVLSRMERAGVLINSDILAEHSKEIAVRLDELEKEAH 572 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 L V + ++L+T LF + L + T +T + VL + + Sbjct: 573 ELAG-EVFNLASPKQLQTILFEKLNLPVVKKTPGGAPSTNEEVLEELVDHHELPKVILEH 631 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L + ++ + T + TGR S QN+P + Sbjct: 632 R-GLAKLKSTYTDKLPQMVHPLTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRR- 689 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IASEG +++ AD + IE R++A ++ +Q L Sbjct: 690 ------------------------IRQAFIASEGYRIMAADYSQIELRIMAHLSQDQGLL 725 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 KAF G+D++ T A F+V QVT +QR K + L Y A + L + Sbjct: 726 KAFAEGQDIHRATAAEVFDVPLEQVTSEQRRSAKAINFGLIYGMSA-----FGLSRQLGI 780 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + E + + +E E + G R R Sbjct: 781 PRGEAQRYMDLYFERYPGVLAYMERTREQAEEQGYVETLAGRRLYLPDIKSRNGTRR--- 837 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G A K+ + + + Sbjct: 838 --KAAEREAINAPMQGTAADIIKKAMIAVDDWIISE------------------------ 871 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 K I+Q +V VH ++ Sbjct: 872 --------------APK-VRMIMQ-------------VHDE---LVFEVH--------ES 892 Query: 640 DEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + N + LM + +PL+ + + Sbjct: 893 ELENTEQKIRELMEKSV--VLDVPLQVDVGIGDNW 925 >gi|237507804|ref|ZP_04520519.1| DNA polymerase I [Burkholderia pseudomallei MSHR346] gi|235000009|gb|EEP49433.1| DNA polymerase I [Burkholderia pseudomallei MSHR346] Length = 923 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 349 AFDTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 506 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + L+QE Sbjct: 507 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 566 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F L + T + T + VL + P + + Sbjct: 567 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N D T + TGR + QN+P + Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 683 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A G K+V AD + IE R++A ++ ++ L Sbjct: 684 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 719 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 825 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 867 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL E Sbjct: 868 -------------RARM--------IMQ-------------VHDE---LVL--------E 882 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|224536944|ref|ZP_03677483.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus DSM 14838] gi|224521431|gb|EEF90536.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus DSM 14838] Length = 941 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 95/695 (13%), Positives = 196/695 (28%), Gaps = 149/695 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 L ID ET S + + ++ +F ++ + + Sbjct: 369 KILSIDTETTSAEPM----------EAELVGMSFSDTENQAYYVPVPAEREEALKIVNEF 418 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 + EN V N ++ VL+ +++ T++ + + E Sbjct: 419 RPLYENETSMKVGQNIKYDILVLQNY-GMEVK-GELFDTMIAHYVLQPELRHNMDYLAEI 476 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + ELI K +Y D VT ++ L Sbjct: 477 YLH--YQTIHIDELIG---------PRGKNQKNMRDLPPEEVYKYACEDADVTLKLKNVL 525 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E E L + + G +D ++ V ++++E+ L Sbjct: 526 EEELKKQGVEHLFYEIEMPLVRVLANLESNGVRIDTEALKQTSEHFTVRLQEIEKEIYEL 585 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + + T+T T + VL S + ++ R Sbjct: 586 -AEETFNIASPKQVGEILFDKLKITDKAKKTKTGQYVTSEEVLESLRNKHEIIGKILEYR 644 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L +N GR+ + + TGR S QN+P +E Sbjct: 645 -GLKKLLGTYIDALPLLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIPIRDEDGKE- 701 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I +G + AD + IE R++A ++ ++ + Sbjct: 702 ------------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNMI 737 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF +G D++ T A+ + V VT D R K + Y +N+ Sbjct: 738 DAFLSGYDIHAATAAKIYKVDIKDVTSDMRRKAKTANFGIIYGISI-----FGLAERMNV 792 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + E + + + E + +R +++ V Sbjct: 793 DRKEAKELIDGYFETYPQVREYMDKSIQIAREQGYVETIFHR--KRFLPDINSRNATVRG 850 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G A Sbjct: 851 Y---AERNAINAPIQGSAADII-------------------------------------- 869 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 ++ Y + N+ ++L VHDE+ P+ Sbjct: 870 ------KVAMARIYKRFQSNNL-------------------KAKMILQVHDELNFSVPEA 904 Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + M + +PL+A+ K + Sbjct: 905 EKEFVQQIVIEEMERA--YRMHVPLRADCGWGKNW 937 >gi|167566520|ref|ZP_02359436.1| DNA polymerase I [Burkholderia oklahomensis EO147] Length = 923 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 103/699 (14%), Positives = 189/699 (27%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 349 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPVAHRGPDLPAQLPRDEVL 398 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ + + ++ VL + + TL+ + Sbjct: 399 AKLKPWLEDASRKKLGQHLKYDAQVLVNH-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLDKASEYAAEDADITLQLHHA 506 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + +L+QE Sbjct: 507 LYPQIAREPGLTRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVELEQEAY 566 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F L + T + T + VL + P + + Sbjct: 567 VLAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N + T + TGR + QN+P + Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 683 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA+ G K+V AD + IE R++A ++ ++ L Sbjct: 684 ------------------------IREAFIAAPGCKIVSADYSQIELRIMAHISEDESLL 719 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRTRAKEKGYVETVFGR---------RLWLPEING 825 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERG-------------------- 865 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 + ++ +VL E Sbjct: 866 ----------------------------GFAARMIM----QVHDE---LVL--------E 882 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 883 VPENELSVVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|330837291|ref|YP_004411932.1| DNA polymerase I [Spirochaeta coccoides DSM 17374] gi|329749194|gb|AEC02550.1| DNA polymerase I [Spirochaeta coccoides DSM 17374] Length = 946 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 108/702 (15%), Positives = 215/702 (30%), Gaps = 165/702 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-------VHDPVMPQ 55 + D ET ID+ K + F+ + ++ M Sbjct: 377 QVAFDVETT-DIDVMKAVP---------VGFSLSWKAGEAWYVPLVAGGKTVSNEKAMKA 426 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112 V+K+ LEN + ++ N ++ V+ + I + T+V A + + Sbjct: 427 VVKKHLENPALGVIGQNLKYDYKVMARW-GVRIA-NPVFDTMVAAWLLDSASGIYNMDKL 484 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + G I + + + +Y D VT ++ Sbjct: 485 ADKY--------LGYVTITY-------DQVVPKGALFSDVPLDKAVQYAAEDADVTWRLY 529 Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + P+ E L + + G +DV + +D K+ +E+ Sbjct: 530 ETFAPMLAERKMTSLMDDLEMPLLRVLADMELEGVRLDVDRLIMFGEEIDGRVEKITREI 589 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ETTCQRVLSSNKKLTPQAIQVFNN 279 L + ++L+T LF E GL + T +T L L P + + Sbjct: 590 YELCGH-EFNINSPKQLQTVLFGERGLPVGRKTASGPSTAVETLEKLVGLDPVPALILDY 648 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + ++ L E ++ + T + TGR + QN+P + Sbjct: 649 R-GLVKLKNTYIDALPEQVDVNTGRVHTTFIQTGTATGRLASRNPNLQNIPIRNDDGRR- 706 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +RS + G + AD A IE VLA + G++ Sbjct: 707 ------------------------IRSAFVPERGYVFLSADYAQIELVVLAHVTGDEGLR 742 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G+D++ T + FNV P VT DQR I K + + G++ Sbjct: 743 EAFLAGQDVHRHTASLIFNVKPEDVTPDQRRIAKTINFGVM--------------YGMST 788 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 ++ + + + ++ +++ V Sbjct: 789 FRLSNELAISHSQ------------------------------AAEFIDSYFKRYHGVKT 818 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 +E + E+T + G ++ ++ Sbjct: 819 FVDETRKKAEET--------------------------GFVSTMFGHERHVPEIRSSNRM 852 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + + + I+Q + DI+ M+ +++ ++L VHDE++ Sbjct: 853 EKSGAER---------VVVNTIIQGTAADIMKLAMLRISRSLKDSGINARLLLQVHDELI 903 Query: 634 CETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 E E S+L M +PL++ + Sbjct: 904 FEVASGQEEKLSVLVKDAMEKAVK--LSVPLRSSVETGASWG 943 >gi|167573600|ref|ZP_02366474.1| DNA polymerase I [Burkholderia oklahomensis C6786] Length = 923 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 103/699 (14%), Positives = 189/699 (27%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 349 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPVAHRGPDLPAQLPRDEVL 398 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ + + ++ VL + + TL+ + Sbjct: 399 AKLKPWLEDASRKKLGQHLKYDAQVLVNH-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLDKASEYAAEDADITLQLHHA 506 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + +L+QE Sbjct: 507 LYPQIAREPGLTRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVELEQEAY 566 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F L + T + T + VL + P + + Sbjct: 567 VLAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N + T + TGR + QN+P + Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 683 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA+ G K+V AD + IE R++A ++ ++ L Sbjct: 684 ------------------------IREAFIAAPGCKIVSADYSQIELRIMAHISEDESLL 719 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRTRAKEKGYVETVFGR---------RLWLPEING 825 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERG-------------------- 865 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 + ++ +VL E Sbjct: 866 ----------------------------GFAARMIM----QVHDE---LVL--------E 882 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 883 VPENELSVVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|254483343|ref|ZP_05096574.1| DNA polymerase I superfamily protein [marine gamma proteobacterium HTCC2148] gi|214036438|gb|EEB77114.1| DNA polymerase I superfamily protein [marine gamma proteobacterium HTCC2148] Length = 896 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 108/697 (15%), Positives = 195/697 (27%), Gaps = 153/697 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S Y E V+ +F + HD + Sbjct: 321 AFDTETTSLN---------YME-AKVVGVSFAIEAGKAAYVPLAHDYLGAPEQLDRDAVL 370 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 +K LE+ + V N ++ +VL + + + T++ + + Sbjct: 371 AQMKPLLEDPNQAKVGQNLKYDASVLANH-GIALKGIDY-DTMLESYVLDSTAT------ 422 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + K L E + ++ G Y D +T + + Sbjct: 423 --RHDMDSLAL-KYLGQNTIHFEDIAGKGAKQLTFNQVKVEEAGPYAAEDADITLRLHQA 479 Query: 175 LEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + I +G + + H + + + +L Sbjct: 480 LWPKLEELSSLLPVFRDIELPLVPVLSKIERQGALLSCEMLHQQSTELGLRLEELKSAAY 539 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 L + ++L LF + L + T +T + VL P + Sbjct: 540 ELAGQ-EFNLGSPKQLGEILFEKLELPIIKKTPKGAPSTAEEVLVELALDYPLPKLLLEY 598 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ + L +N GR+ + A+ TGR S QN+P + Sbjct: 599 R-SLSKLKSTYTDKLPGMVNPQTGRVHTSYHQAVAA-TGRLSSSDPNLQNIPIRTEEGRR 656 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA +G ++V AD + IE R++A ++ + Sbjct: 657 -------------------------IRQAFIAPQGFRIVAADYSQIELRIMAHLSDDPSL 691 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF+ G+D++ T A F V+ +V+ DQR K + L Y A L+ Sbjct: 692 LTAFKEGQDVHRATAAEVFEVSLDEVSGDQRRKAKAINFGLIYGMSA-----FGLAKQLH 746 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 L + E + + + E + G + R K Sbjct: 747 LGRHEAQEYIDRYFERYPGVAQYMDRTRAIAKEQGFVETLFGRRLYLPEINARNKMR--- 803 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + G A KR Sbjct: 804 --VQAAERTAINAPMQGSAADIIKR----------------------------------- 826 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDEIVCETP 637 + + + L + M+ +VL E Sbjct: 827 AMLSVDQWLEQGDANAR------------------MIMQVHDE---LVL--------EVA 857 Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + S + LM+ A +PL E + Sbjct: 858 NDEVDAVSNQVCRLMSGAAELA--VPLLVEAGVGDNW 892 >gi|33865236|ref|NP_896795.1| DNA polymerase I [Synechococcus sp. WH 8102] gi|33638920|emb|CAE07217.1| DNA polymerase I [Synechococcus sp. WH 8102] Length = 981 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 115/712 (16%), Positives = 210/712 (29%), Gaps = 161/712 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD----------- 50 + +D ET ++ + + + H+ Sbjct: 387 VALDTETTDLNPFK----------AELVGIGVCWGEELDALAYIPLGHNGSADSQPVQLP 436 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--S 107 + L L + D N+ F+R +L L + I TL+ Sbjct: 437 LETVVTALAPWLGSEDHPKALQNAKFDRLILMRH-GLALD-GVVIDTLLADYLRDAAAKH 494 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L+ + E + + L + + +YC DV V Sbjct: 495 GLELMAER---------------EFGFQPTAYSDLVGKKQTFADVPLEAASQYCAMDVHV 539 Query: 168 TREIFKRLEPLS------------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 TR + L EQ L + + G +DV L+ + Sbjct: 540 TRRLALLLRNQLAAMGAQVLTLLEQVEQPLEPVLAEMEATGIRIDVPYLQELSTEMGTTL 599 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLT 270 +L+ E + + ++L LF GL + +T VL Sbjct: 600 ERLETEAKEAAGVD-FNLASPKQLGELLFDTLGLDRKKSRRTKTGYSTDATVLEKLGDDH 658 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P V +R+ S+ ++ L + + GR+ + TGR S QN+ Sbjct: 659 PVVPLVLEHRV-LSKLKSTYIDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQNI 716 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P + S +R + G L+ AD + IE R+L Sbjct: 717 PVRTE-------------------------YSRRIRKAFLPQAGWTLLSADYSQIELRIL 751 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 ++GE+ +A+ +G+D++ T + +V+ D+R +GK + + Y GA Q Sbjct: 752 THLSGEEVLQEAYRSGDDVHALTARLL--LDKDEVSADERRLGKTINFGVIYGMGA---Q 806 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 + A TG++ + + + + F + + +G Sbjct: 807 RFARETGVSQSE--AKDFLSKYKQRYPKVFAFLELQERLALSRGYVETILG--------- 855 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 R P + + L+ P Sbjct: 856 ----------------------------------RRRPFHFDRNGLGRLLGKEPL----- 876 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623 ++ + + Q R +Q S DI+ M+ A Sbjct: 877 --EIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQAALTSQGLPAR 928 Query: 624 IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE+V E PD E M+ M + +PL AE + Sbjct: 929 LLLQVHDELVLEVEPDALETTRDMVVRTMENAVK--LTVPLVAETGVGANWM 978 >gi|260435580|ref|ZP_05789550.1| DNA polymerase I [Synechococcus sp. WH 8109] gi|260413454|gb|EEX06750.1| DNA polymerase I [Synechococcus sp. WH 8109] Length = 986 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 109/712 (15%), Positives = 206/712 (28%), Gaps = 161/712 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD--HPVELWDCVHD----------- 50 + D ET ++ + + + H Sbjct: 392 VAFDTETTDLNPFR----------AELVGIGICWGETLDALAYIPLGHKGNEDSSPEQLP 441 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--S 107 + L L +++ N+ ++R +L + + I TL+ Sbjct: 442 LETVLTALAPWLASSNHPKTLQNAKYDRLILLRH-GVALE-GVVIDTLLADYLRDAAAKH 499 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L+ + E + L + + YC DV V Sbjct: 500 GLELMAER---------------EFGFQPTAFTDLVGKKQTFADVPLEPASLYCGMDVHV 544 Query: 168 TREIFKRLEPLSSKE------------QELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 TR + L Q L + + G +DV L++ + Sbjct: 545 TRRLALLLRHQLEAMGPQLMPLLEQVEQPLEPVLARMESTGIRIDVPYLQGLSEEMGSTL 604 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270 +L+ + ++ + ++L LF GL + T+ +T VL Sbjct: 605 QQLESDAKAAAGVD-FNLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVLEKLGNDH 663 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P V +R+ S+ ++ L + + GR+ + TGR S QN+ Sbjct: 664 PVVPLVLEHRV-LSKLKSTYIDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQNI 721 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P + S +R + EG L+ AD + IE R+L Sbjct: 722 PVRTE-------------------------YSRRIRKAFLPQEGWTLLSADYSQIELRIL 756 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 ++GE+ +A+ +G+D++ T + +V+ D+R +GK + + Y GA Q Sbjct: 757 THLSGEEVLQEAYRSGDDVHALTARLL--LDKNEVSPDERRLGKTINFGVIYGMGA---Q 811 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 + A TG++ + + + F + + +G Sbjct: 812 RFARETGVSQSE--AKEFLARYKQRYPKVFAFLELQERLALSRGYVETILG--------- 860 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 R P + + L+ P Sbjct: 861 ----------------------------------RRRPFHFDRNGLGRLLGKAPL----- 881 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623 ++ N + Q R +Q S DI+ M+ A Sbjct: 882 --EIDLNVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQDALQRQGLPAQ 933 Query: 624 IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE+V E ++ M A +PL E + Sbjct: 934 LLLQVHDELVLEVAPNALDATRELVVQTMEQAV--ALSVPLVVETGVGANWM 983 >gi|53722791|ref|YP_111776.1| DNA polymerase I [Burkholderia pseudomallei K96243] gi|134278161|ref|ZP_01764875.1| DNA polymerase I [Burkholderia pseudomallei 305] gi|52213205|emb|CAH39245.1| DNA polymerase I [Burkholderia pseudomallei K96243] gi|134249945|gb|EBA50025.1| DNA polymerase I [Burkholderia pseudomallei 305] Length = 923 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 349 AFDTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 506 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + L+QE Sbjct: 507 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 566 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F L + T + T + VL + P + + Sbjct: 567 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N D T + TGR + QN+P + Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 683 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A G K+V AD + IE R++A ++ ++ L Sbjct: 684 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 719 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 825 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 867 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL E Sbjct: 868 -------------RARM--------IMQ-------------VHDE---LVL--------E 882 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|192293562|ref|YP_001994167.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1] gi|192287311|gb|ACF03692.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1] Length = 1025 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 100/710 (14%), Positives = 197/710 (27%), Gaps = 168/710 (23%) Query: 11 RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------------- 51 + L +I A + H Sbjct: 433 TGIVALEAAATSIDPMQAELIGLALALGPNDACYIPLPHKQSGDGDGLFAAGLAPDQIGP 492 Query: 52 -VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PS 107 LK LE+ V V F +L + + +++ + Sbjct: 493 RDALDALKPILESAGVAKVGFAIKFAAVLLAQH---GLTLRNIDDPQLMSYALDAGRGSH 549 Query: 108 ALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 AL A+ E+ L + + E + Y Sbjct: 550 ALDALSESNLGHTLHTLTEL-------------TGTGKNKIGFDQVPVDRATAYAAERAD 596 Query: 167 VTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 V+ + + L+P + E+ L + + RG +D + L+ Sbjct: 597 VSLRLARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLSADFAQTAA 656 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQ 272 +++ E+ L + + ++L LF + GL T+ +T +VL + + Sbjct: 657 RIEAEIRELAGEDI-NIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHE 715 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + + + S+ + L ++ T L A+ TGR S QN+P Sbjct: 716 FPRKILDWRQVSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVR 775 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + + +R +A+ G KLV AD + IE R+L+ + Sbjct: 776 TEDGRK-------------------------IRRAFVATPGNKLVSADYSQIELRLLSEV 810 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 A KAF+ G D++ T + F V + + R K + Sbjct: 811 ADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINF--------------G 856 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ A+ + K + + Sbjct: 857 IIYGISAFGLANQLSI------------------------------PREEAGAYIKRYFE 886 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + +E +G GR Y D Sbjct: 887 RFPGIRAYMDETRDFCRT---HGYVTTL-----------------------FGRKCHYPD 920 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVL 626 + + + R Q + DI+ M+ K ++L Sbjct: 921 IKASNP---SIRAFNERAAINARL------QGSAADIIRRAMVRMEDALAEKKLSAQMLL 971 Query: 627 TVHDEIVCETPDTDEFN-ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 VHDE++ E P+ + ++ +M P+ +PL+ + + + Sbjct: 972 QVHDELIFEVPEAEVEATLPVVRSVMQDAPFPAVILNVPLQVDARAADNW 1021 >gi|154249057|ref|YP_001409882.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1] gi|154152993|gb|ABS60225.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1] Length = 898 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 107/703 (15%), Positives = 205/703 (29%), Gaps = 163/703 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMP----Q 55 + +D ET S + ++ + D+ H +P + Sbjct: 325 KKIALDLETTSLDPF----------EGKIVGISIAVDEGKAFYIPIAHVGAKNIPIESVK 374 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112 L N+ T+ HN F+ + ++ I +++ A L + Sbjct: 375 KFLRDLFNSGKTVGGHNIKFDLKFISR-LGIEPQIPS-FDSMIEAYLLNPNEKKFNLDEL 432 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 LKL KM ++L+ +Y D ++ I Sbjct: 433 S--LKLLGHKMISYEDLVKDTIPLFAG--------DFSYIPVDTAVKYSCEDADMSLRIH 482 Query: 173 KRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E + + + G D+ + L+Q +D + L + Sbjct: 483 NLLHPLIYSNEMNELYEKIELPMILVLANLELNGVYFDIQYLNNLSQEMDKKLLALSNRI 542 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278 +T + ++L LF + L T +T VL A + Sbjct: 543 FEITG-EAFNLNSPKQLGYILFEKLKLPSVKSTSTGAYSTDVEVLEYLANEYEIAKLILE 601 Query: 279 NRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R + + ++ + +N + R+ + G + TGR S QNLP S + Sbjct: 602 YR-KIQKLKSTYVDAIPNMVNKNTKRVHASFNQTG-TATGRLSSSDPNLQNLPGRSDEGK 659 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQ 396 E +R V +G ++ AD + IE RVLA + + Sbjct: 660 E-------------------------IRMAVKPQKDGWYILGADYSQIELRVLAHITEDP 694 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF+ +D+++ T + F V+ +T++ R I A G Sbjct: 695 NLINAFKENKDIHLETAKKLFGVSEEFITENMRRI--------------GKMVNFAIVYG 740 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A +++ +A+ + Sbjct: 741 VSPYGLAKR------------------------------TGLDVKDTKKMIEAYLDYYKN 770 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E + + ++ N + GR + + Sbjct: 771 VQEYMANIKEFAKK--------------------------NGYVRTMFGRKRDIPQINSK 804 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630 + R +Q + DI+ M+ K ++L VHD Sbjct: 805 DQ---NIRAEGERIAINTP------IQGSAADIMKIAMIRIYERLKDEKLQSMMILQVHD 855 Query: 631 EIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672 E+V E P+ + L M + +PL + Y K Sbjct: 856 ELVFEVPENEVEYVKKLVKEEMENAVK--LRVPLLVDIYVEKY 896 >gi|78779619|ref|YP_397731.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312] gi|78713118|gb|ABB50295.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312] Length = 976 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 111/712 (15%), Positives = 202/712 (28%), Gaps = 160/712 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD---------- 50 + +D ET S + D ++ + + H Sbjct: 382 IVSLDTETNSLNPI----------DAELVGIGLCLGEETDDLFYIPLGHQTKKETTNQLS 431 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPS 107 + ++ +E+ NS F+R + LD+ TL+ Sbjct: 432 IEEVFSKIRTWIEDPKKEKALQNSKFDRQIFFNH-GLDLK-GVTFDTLLADYLLNNQEKH 489 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L + L K + + +NK YC DV + Sbjct: 490 GLSEISFRL---------------FGFKPPSFKETVGKNKDFSFVDIDEASVYCGYDVFL 534 Query: 168 TREIFKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 T +I K + E L + + G +D+ L++ + Sbjct: 535 TFKIVKIFKERFSMEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTL 594 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270 ++ ++ L + ++L LF + L + T+ +T VL Sbjct: 595 EDIESKVYEL-AEGNFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEH 653 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 + +R S+ ++ L +N GR+ A+ TGR S QN+ Sbjct: 654 EIIQYLIKHR-TLSKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNI 711 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P + S +R + + KL+ AD + IE R+L Sbjct: 712 PVRTE-------------------------FSRRIRKAFLPEKNWKLLSADYSQIELRIL 746 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A E+ + AF +D++ T F +++ D+R +GK + + Y G K Sbjct: 747 AHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMGIKK-- 802 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 A +TG++ E + F + G E Sbjct: 803 -FARSTGVSTPE--AKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK 859 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + K+ + L S R Sbjct: 860 -------------------------------------NGLGRLIGKDPYEIDLQSARR-- 880 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623 Q R +Q S DI+ M+ K Sbjct: 881 -----------AGMEAQSLRAAANAP------IQGSSADIIKIAMVQINKKFIEMNVPAK 923 Query: 624 IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE++ E PD+ E ++ M +PL + + Sbjct: 924 MLLQVHDELLFEVEPDSLEITTKLVKKTMEDCVK--LNVPLLVDIGIGDNWM 973 >gi|148242768|ref|YP_001227925.1| DNA polymerase I [Synechococcus sp. RCC307] gi|147851078|emb|CAK28572.1| DNA polymerase I [Synechococcus sp. RCC307] Length = 986 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 107/708 (15%), Positives = 211/708 (29%), Gaps = 157/708 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVHDP--------VM 53 + ID ET ++ F + D+ + H + Sbjct: 396 VAIDTETTDLNPFR----------AQLVGLGFCWGEADNDLAYIPIGHSGAEGQLPLAEV 445 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKA 111 + L L + N+ ++R VL L++ TL+ L+ Sbjct: 446 LEALAPWLASPTQRKCLQNAKYDRLVLLRH-GLELNGVAV-DTLLADYLRDASARHNLEE 503 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + + + L + + +YC DV +T + Sbjct: 504 LAQRH---------------YGFRPTSFSDLVGKGQTFADVPIEAAAQYCGMDVHLTYRL 548 Query: 172 FKRLEPLSSKEQELWY------------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 L + E + + G +DV L Q + + +L+ Sbjct: 549 AIDLVQQLEQLGEALPQLLSELELPLEPVLAQMEATGIRIDVPYLQELGQSMGDKLQQLE 608 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAI 274 Q+ + + ++L LF GL + T+ +T VL + P Sbjct: 609 QQAIAAAG-EEFNLASPKQLGELLFNTLGLDRKKSRKTKTGWSTDAAVLEKLEDAHPVVP 667 Query: 275 QVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 V +R S+ ++ L + + + GR+ + TGR S QN+P + Sbjct: 668 LVLEHR-TLSKLKSTYVDALPQLVESETGRVHTDFNQAV-TATGRLSSSNPNLQNIPVRT 725 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 S +R + + L+ AD + IE R+L + Sbjct: 726 A-------------------------YSRQIRKAFLPQKDWTLLSADYSQIELRILTHLC 760 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 GE+ ++A+ +G+D++ T + ++V+ ++R +GK + + Y GA Q+ A Sbjct: 761 GEEALVEAYNSGDDVHALTARLL--LDKSEVSDEERRLGKTINFGVIYGMGA---QRFAR 815 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 TG++ + + + F W + + +G Sbjct: 816 ATGVS--QAEAKEFLSRYKQRYPKVFAFLEWQERLALSRGYVETLMG------------- 860 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 R P + + L P ++ Sbjct: 861 ------------------------------RRRPFHFDPQGLGRLKGTDP-------AEI 883 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLT 627 + + Q R +Q S DI+ + M++ + ++L Sbjct: 884 DLDVARRGGMEAQQLRAAANAP------IQGSSADIIKKAMVDLQQLLLDQQLPARLLLQ 937 Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 VHDE+V E + M S +PL E + Sbjct: 938 VHDELVLECAPNALATVQSSVQRTMEQAVS--LSVPLVVEIGSGPNWM 983 >gi|298242591|ref|ZP_06966398.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963] gi|297555645|gb|EFH89509.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963] Length = 1041 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 102/708 (14%), Positives = 195/708 (27%), Gaps = 165/708 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 D ET S ++ +F H Sbjct: 455 HFAFDTETTSED----------QRKADLVGLSFAMAPGEAYYIPVGHTTTVDGQEPGTQL 504 Query: 51 --PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108 + LK E+ + HN+ ++ V+ + + +++ A Sbjct: 505 PLSHVLVQLKPIFEDASIGKYMHNAKYDIAVMLRY-GIQVEGLS-FDSMLAAYLIEPGR- 561 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 L L Q + L+ + + R +Y D +T Sbjct: 562 -----RGLGLKEQAFQRLSILMTPI---TELIGSGSKIISMAQVPIRRAADYAGSDADMT 613 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + L K L + + G +D H + ++ + K Sbjct: 614 LRLVVPLHKDLQKHNLLDLFYRLEMPLIKVLMQMELYGVALDAEFLHEFGEQLNEQLRKA 673 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQ 275 +Q + + ++L LF+E L T+ + V+ + + + P Sbjct: 674 EQTIYDAVGHH-FNVNSPKQLGEVLFVELKLPAGKKTKTGYSVSADVIENLRGMHPAIDS 732 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + R S+ ++ L M+ GR+ + A +GR S QN+P + Sbjct: 733 LLEYRQ-LSKLKSTYIDGLQTLMDRQTGRVYTSFNQTIA-SSGRLSSSNPNLQNIPVRTE 790 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA L+ AD + IE R+LA + Sbjct: 791 LGR-------------------------QIRRAFIADPSYVLLTADYSQIELRILANITN 825 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 E ++AF GED++ T A F+V +VT+DQR + K + Sbjct: 826 EPRLVEAFNQGEDIHTITAASLFSVPVEEVTRDQRRLAKTVV------------------ 867 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + ++ + K + + Sbjct: 868 --------------------------YAVLYGQSAYGLSQVTGMRPGDAADFIKRYHETF 901 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + EQ G GR D+ Sbjct: 902 PNIKVY---VESTLEQARRQGYVNTC-----------------------FGRKRFIPDMR 935 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 + R+ + +Q + D++ M+ A ++L V Sbjct: 936 --------VLSHVERQAL-EREAVNMPIQGSNADLIKVAMLRLQHAFLQNGMKTRMILQV 986 Query: 629 HDEIVCETPDTDEFNASMLYH-LMT--SNPSWAKGLPLKAEGYESKRY 673 HDE+V E P + A + +M + +P+K + K + Sbjct: 987 HDELVFEVPVEELERAKRIVKAVMEGIGALLVPQKVPIKVDMKSGKNW 1034 >gi|53716619|ref|YP_105127.1| DNA polymerase I [Burkholderia mallei ATCC 23344] gi|121597404|ref|YP_991095.1| DNA polymerase I [Burkholderia mallei SAVP1] gi|124381759|ref|YP_001025495.1| DNA polymerase I [Burkholderia mallei NCTC 10229] gi|126446346|ref|YP_001077557.1| DNA polymerase I [Burkholderia mallei NCTC 10247] gi|167000295|ref|ZP_02266114.1| DNA polymerase I [Burkholderia mallei PRL-20] gi|238561508|ref|ZP_00441953.2| DNA polymerase I [Burkholderia mallei GB8 horse 4] gi|254177233|ref|ZP_04883889.1| DNA polymerase I [Burkholderia mallei ATCC 10399] gi|254203066|ref|ZP_04909428.1| DNA polymerase I [Burkholderia mallei FMH] gi|254208399|ref|ZP_04914748.1| DNA polymerase I [Burkholderia mallei JHU] gi|254359414|ref|ZP_04975686.1| DNA polymerase I [Burkholderia mallei 2002721280] gi|52422589|gb|AAU46159.1| DNA polymerase I [Burkholderia mallei ATCC 23344] gi|121225202|gb|ABM48733.1| DNA polymerase I [Burkholderia mallei SAVP1] gi|126239200|gb|ABO02312.1| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10247] gi|147746111|gb|EDK53189.1| DNA polymerase I [Burkholderia mallei FMH] gi|147751086|gb|EDK58154.1| DNA polymerase I [Burkholderia mallei JHU] gi|148028601|gb|EDK86561.1| DNA polymerase I [Burkholderia mallei 2002721280] gi|160698273|gb|EDP88243.1| DNA polymerase I [Burkholderia mallei ATCC 10399] gi|238524488|gb|EEP87921.1| DNA polymerase I [Burkholderia mallei GB8 horse 4] gi|243063777|gb|EES45963.1| DNA polymerase I [Burkholderia mallei PRL-20] gi|261826488|gb|ABN00542.2| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10229] Length = 926 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 352 AFDTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 402 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 459 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 460 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 509 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + L+QE Sbjct: 510 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 569 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F L + T + T + VL + P + + Sbjct: 570 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 628 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N D T + TGR + QN+P + Sbjct: 629 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTTEGRR- 686 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A G K+V AD + IE R++A ++ ++ L Sbjct: 687 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 722 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 723 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 777 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 778 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 828 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 829 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 870 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL E Sbjct: 871 -------------RARM--------IMQ-------------VHDE---LVL--------E 885 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 886 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 922 >gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07] gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07] Length = 944 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 97/701 (13%), Positives = 186/701 (26%), Gaps = 147/701 (20%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 + ID ET S + ++ + H Sbjct: 356 VCIDTETTSIDPML----------AQLVGISLSVQPGQACYIPVAHRGPDVSGLDNAAQL 405 Query: 51 --PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108 + +K LE+ V + ++ V + + T++ + Sbjct: 406 SREAVLARMKLWLEDETRKKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRN 463 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 A ++ K E A EY D +T Sbjct: 464 HGMDALAERVLHLKTIT----------YEEVCGKGAAQIGFDEVALDRATEYAAEDADIT 513 Query: 169 REIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + + L P E + Q + G VD + + + Sbjct: 514 LRLHRALYPKVTEDDKLRYVYEQIEMPTSIVLQKMERNGVLVDAERLARQSAELGQRLLE 573 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273 L+Q+ +L + +++ F + L + T +T + VL + P Sbjct: 574 LEQQAFALAGQP-FNLNSPKQIGELFFTQLKLPVVKKTASGAPSTDEEVLQKLAEDYPLP 632 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + + R ++ + L + +N T + TGR + QN+P + Sbjct: 633 KLLLDFR-GLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRLASTDPNLQNIPVRT 691 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A G +V AD + IE R++A ++ Sbjct: 692 EEGRR-------------------------IREAFVAPAGSVIVSADYSQIELRIMAHLS 726 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ ++AF G+D++ T A F V P +VT +QR KV+ L Y A Sbjct: 727 EDEGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSA-----FGL 781 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + L + A + + + + ++ E + G Sbjct: 782 ASNLGIGRDAAKLYIDRYFARYPGVARYMDETRQVAHERGYVETVFGRRLWLP-----DI 836 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + +A G A K + + + + Sbjct: 837 NGGNGPRRQAAERAAINAPMQGTAADLIKLSMLAVQDWLEGS---------------PNA 881 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 G + T ++Q +V Sbjct: 882 GKPGVPMRTRL----------------VMQ-------------VHDE-----------LV 901 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P + L LM S +PL AE + Sbjct: 902 LEVPQDELARVRERLPELMCDVAS--LRVPLVAEVGVGSNW 940 >gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170] gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170] Length = 923 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 94/693 (13%), Positives = 189/693 (27%), Gaps = 147/693 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLK 58 L +D ET + ++ +F + ++ D + K Sbjct: 352 ILSLDTETTGTDPIR----------AELVGMSFAYAENQAFYVPVPADRTEAQRIVDKFK 401 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116 EN V N ++ VL ++I T++ + + E Sbjct: 402 PVFENPQTLKVGQNIKYDMLVLANY-GVEIQ-GPMFDTMIAHYVLQPELHHGMDYLAEIY 459 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + +ELI K Y D VT ++ LE Sbjct: 460 LH--YETIKIEELIG---------PKGKNQKNMRDLDPANIYRYACEDADVTLKLKNVLE 508 Query: 177 PLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + L + + G +D ++ ++++E+ L Sbjct: 509 KELKQNDAEALFCDIEMPLVPVLAYMERNGVRIDTEALKETSRHFTARMNQIEEEVHRLA 568 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF + T+T T + VL S K ++ +R Sbjct: 569 GV-EFNIASPKQVGEVLFDRLKIVDKPKKTKTGQYVTSEEVLESLKGKHEIVEKILEHR- 626 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ L + +N + T + TGR S QN+P + +E Sbjct: 627 GLKKLLGTYIDALPQLINPETGHIHTSFNQTVTATGRLSSSNPNLQNIPVRNEDGKE--- 683 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R I EG + AD + IE R++A ++G+ ++A Sbjct: 684 ----------------------IRKAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIEA 721 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F +D++ T A+ + VT++QR+ K + Y L ++ Sbjct: 722 FRANQDIHAATAAKIYKEKLEDVTREQRSKAKTANFGIIYGISV-----FGLAERLGIDR 776 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + E + + + + + + R V Sbjct: 777 KEAKELIDGYFENYPHVKEYMDSSIQAARQKGYIETVFRRRRYLPDINSRNAV--VRGY- 833 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + G A K + + R + + Sbjct: 834 --AERNAINAPIQGSAADIIKVAMIRIY----------------RRFREEGIRSK----- 870 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 M+ L VHDE+ ++ Sbjct: 871 --------------------------------MI----------LQVHDELNFSVVPEEK 888 Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + M S + +PL A+ K + Sbjct: 889 EKVQQIVIAEMESA--YKMKVPLLADCGWGKNW 919 >gi|213610185|ref|ZP_03370011.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 870 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 91/640 (14%), Positives = 185/640 (28%), Gaps = 152/640 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ V V N ++R VL+ +++ T++ + +V Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H ++ + + +L+++ Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT +QR K + G++ Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + ++ + +++ V E Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + GR L D+ ++ + Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + +Q + DI+ M+ Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDA 865 >gi|86607628|ref|YP_476390.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556170|gb|ABD01127.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)] Length = 931 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 90/698 (12%), Positives = 191/698 (27%), Gaps = 166/698 (23%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKE 59 D ET S D ++ + + + H ++ Q L+ Sbjct: 367 DTETTSLDP----------RDAQLVGIGCCWSEGDIAYLPIGHRQGSNLDWELVKQSLQP 416 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 E+ + N ++ ++ + + + ++ + ++ A Sbjct: 417 LWEDPNRPKSLQNCKYDLSIF-RAHGIRLQGIQ-FDPMLASYVLDPEASHNLADLAATHL 474 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + K+L+ + + EYC D + L Sbjct: 475 NLPTTSYKKLLG-------------KEQSIADIPISKVAEYCGTDAYCAYRLVPILTEKL 521 Query: 180 SKEQELWY------------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 K + + + + G VD +Q ++ E L+Q+ + Sbjct: 522 QKTDPRLWDLFIQVELPLAQVLEEMEWIGIRVDTEFLRQFSQELEQELQSLEQKAYAQAG 581 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L + LF + L + + +T VL + P + R Sbjct: 582 -ETFNLNSPKQLGSLLFEKLKLDIRKTRKTATGYSTDASVLEKLEGDHPLIETIVQYR-T 639 Query: 283 ASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ ++ L + SD GR+ + TGR S QN+P + Sbjct: 640 LAKLKSTYVDALPALVRSDTGRVHTDFNQ-TVTATGRLSSSNPNLQNIPIRTE------- 691 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 S +R I EG L AD + IE R+LA ++ E L+ Sbjct: 692 ------------------FSRRIRQAFIPQEGWLLTAADYSQIELRILAHLSQEPALLEG 733 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F +GED++ L Sbjct: 734 FRSGEDVHT----------------------------------------------LTARL 747 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + S N+ A + ++ + + ++++ + Sbjct: 748 LLEKQEITSEERRLAKTINYGVIYGMGAQRFARTAGVSLSEAKQFLQRFNERYAGIFAYL 807 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 E+ + + GR + ++ S L Sbjct: 808 RSTEAFVEK--------------------------HGYVETILGRRRYFPNL----SRLT 837 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETP 637 +Q +Q + DI+ M+ + ++L VHDE+V E Sbjct: 838 GHRKQAELRA-----AVNAPIQGSASDIIKVAMVRLRQKLQNFRSRLLLQVHDELVFEVD 892 Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++ ++ M +PL + ++ Sbjct: 893 PSEWQALKPLIQREMEGAVP--LSIPLVVDIQIGHNWK 928 >gi|85709565|ref|ZP_01040630.1| DNA polymerase I [Erythrobacter sp. NAP1] gi|85688275|gb|EAQ28279.1| DNA polymerase I [Erythrobacter sp. NAP1] Length = 946 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 113/721 (15%), Positives = 204/721 (28%), Gaps = 184/721 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-----PQV 56 + +D ET S A + ++ + + H P+ Sbjct: 357 RLVAVDTETSSLD----------AMEADLVGVSLALAPNDACYIPLAHGGTDMFSDKPEQ 406 Query: 57 LK---------EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107 + LE+ V V N ++ VL + I + T+V++ Sbjct: 407 VAMEDALAALKLLLEDDSVLKVFQNGKYDLNVLAR---VGIDVSPIEDTMVMSFDLDAGR 463 Query: 108 A--------LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + + E L+ + + + P E Sbjct: 464 GEGMGGGHGMDELSERH------------LLHKPLAFKDVCGTGKKAIPFGEVPLDRATE 511 Query: 160 YCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D VT +++ L+P ++ L + + G VD A L++ Sbjct: 512 YAAEDADVTLRLYRMLKPRLSEEGGTKIYERVDRPLIPVVAGMEREGIKVDRARLAKLSE 571 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSS 265 L++E+ + + ++L LF + G +T Q VL + Sbjct: 572 EFATTTASLEKEIHEIAGQQ-FAVGSPKQLGEILFDKMGFKGGKKGKSGAYSTDQSVLEN 630 Query: 266 NKKLT---PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 K P A +V S+ + L +N + T L ++TGR S Sbjct: 631 LAKDEAAKPIADKVL-EWRHLSKLKSTYTDALQAQINPETGRVHTSYSLVGAQTGRLSST 689 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 QN+P + +R + +G L+ AD + Sbjct: 690 DPNLQNIPIRTEIGRT-------------------------IREAFVPEDGNVLLAADYS 724 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R+ A MA +AF GED++ T F +VT+D RA K + A+ Y Sbjct: 725 QIELRLAAHMADVDTLKEAFANGEDIHARTATEMFG----EVTRDTRARAKTINFAILYG 780 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + L + Sbjct: 781 IS-----RWGLAGRLEVEP---------------------------------------DE 796 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + + + Q+ + E + + Sbjct: 797 AQDMIDTYFQRFPGIQRYIMETLETVRE--------------------------RGYSET 830 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----AT 618 GR + + + + R +Q S DI+ M Sbjct: 831 LFGRKTWFPRITSKNQAERQGS---ERAAINAP------IQGTSADIIKRAMARMLPALR 881 Query: 619 KAGY---DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN--PSWAKGLPLKAEGYESKR 672 G ++L VHDE+V E PD D AS + +M P+ + +PL + + Sbjct: 882 DEGLGNVRMLLQVHDELVFELPDGDVEKASPIIERVMAEAALPAVSLDVPLAVDIGTGQS 941 Query: 673 Y 673 + Sbjct: 942 W 942 >gi|282896895|ref|ZP_06304901.1| DNA polymerase A [Raphidiopsis brookii D9] gi|281198304|gb|EFA73194.1| DNA polymerase A [Raphidiopsis brookii D9] Length = 988 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 101/704 (14%), Positives = 210/704 (29%), Gaps = 146/704 (20%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVHD-----------PVM 53 D ET + ++ + V H+ + Sbjct: 392 DTETTDLDP----------RNANLVGIGCCWGTGENDVAYIPLGHNITSNLEKNLPLNTV 441 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 L++ L + D N+ F+R + K + + ++ + Sbjct: 442 LSTLEKILVSGDYPKTFQNAKFDRLIFK-YQGITLD-GVVFDPMLASYVLNPDRTHNLTD 499 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ ++ E +++ +R K + YC V T ++ Sbjct: 500 LALRYLGLQLTEYDDIVQ-------KSGKKERQKTIADISIHTVANYCGKQVYATWQLVG 552 Query: 174 RLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 +L EQ L + + RG ++ A L+Q ++ + L+ + Sbjct: 553 KLREELNEIPALFKLLVDVEQPLEVVLAEMEHRGVIINSAYLQQLSQHIESDLATLEIKA 612 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKK--LTPQAIQ 275 + + ++L LF + GL + +T L ++ T Sbjct: 613 TKIAG-EKFNLGSPKQLSYILFEKLGLSTKYSRKISTGYSTDAATLEKLQEVDQTGFVDA 671 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R ++ ++ L E +N + T A+ TGR S QN+P + Sbjct: 672 IIEYR-TLAKLKSTYVDALPELVNHKTQRIHTNFNQTATATGRLSSSNPNLQNIPIRTA- 729 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 S +R + G +V AD + IE R+LA ++ E Sbjct: 730 ------------------------FSRQIRKAFLPESGWLMVAADYSQIELRILAHLSQE 765 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 ++A+ +D++ T F VT ++R K + + Y G F + Sbjct: 766 PMLIQAYSNNQDIHTLTAKLLF--DKEDVTSEERRFAKTINFGVIYGMGVLKFSR----- 818 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 ++ + + + +++ + +G + + Sbjct: 819 STGVDKNIANEFIQKFNQRYPLVFTYLETIKKQAISQGYVETILGR------RRYFD--- 869 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 K + K +D+ + + K KN Sbjct: 870 -----------------FTNKTLQQLKGKDLQEIELNKLKN------------------- 893 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDE 631 L L R +Q S DI+ M+ + ++L VHDE Sbjct: 894 ----LGPYDAGLLRSAANAP------IQGSSADIIKIAMVRLHEVLRRYQAKLLLQVHDE 943 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 +V E P ++ + +M + +PL + + + + Sbjct: 944 LVFEVPPSEWDELQLQIKSVMENAMK--LSVPLVVDIHVGENWM 985 >gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609] gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609] Length = 944 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 95/701 (13%), Positives = 184/701 (26%), Gaps = 147/701 (20%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 + ID ET S + ++ + H Sbjct: 356 VCIDTETTSIDPML----------AQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQL 405 Query: 51 --PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108 + ++ LE+ V + ++ V + + T++ + Sbjct: 406 SREAVLARMRLWLEDETRGKVGQHLKYDAHVFANH-GIALRGIT-HDTMLQSYVLASHRN 463 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 A ++ K E A EY D +T Sbjct: 464 HGMDALAERVLHLKTIT----------YEEVCGKGAAQIGFDEVALDRATEYAAEDADIT 513 Query: 169 REIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + + L P E + Q + G VD + + Sbjct: 514 LRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERTGVLVDAERLARQSAELGQRLLA 573 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273 L+QE +L + +++ F + L + T +T + VL + P Sbjct: 574 LEQEAYALAGQP-FNLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAEDYPLP 632 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + + R ++ + L + +N T + TGR + QN+P + Sbjct: 633 KLLLDYR-GLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRLASTDPNLQNIPVRT 691 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A G +V AD + IE R++A ++ Sbjct: 692 EEGRR-------------------------IREAFVAPAGSVIVSADYSQIELRIMAHLS 726 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G+ ++AF G+D++ T A F V P +VT +QR KV+ L Y A Sbjct: 727 GDDGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSA-----FGL 781 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + L + A + + + + ++ E + G Sbjct: 782 ASNLGIGRDAAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLP-----DI 836 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + +A G A K + + + + Sbjct: 837 NGGNGPRRQAAERAAINAPMQGTAADLIKLSMLAVQDWLEGS---------------PNA 881 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + + + ++Q +V Sbjct: 882 DKPGTPMRSRL----------------VMQ-------------VHDE-----------LV 901 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P + L LM +PL AE + Sbjct: 902 LEVPQDELARVRERLPELMCGVA--LLSVPLVAEVGVGSNW 940 >gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551] gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551] Length = 946 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 95/701 (13%), Positives = 184/701 (26%), Gaps = 147/701 (20%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 + ID ET S + ++ + H Sbjct: 358 VCIDTETTSIDPML----------AQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQL 407 Query: 51 --PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108 + ++ LE+ V + ++ V + + T++ + Sbjct: 408 SREAVLARMRLWLEDETRGKVGQHLKYDAHVFANH-GIALRGIT-HDTMLQSYVLASHRN 465 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 A ++ K E A EY D +T Sbjct: 466 HGMDALAERVLHLKTIT----------YEEVCGKGAAQIGFDEVALDRATEYAAEDADIT 515 Query: 169 REIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + + L P E + Q + G VD + + Sbjct: 516 LRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERTGVLVDAERLARQSAELGQRLLA 575 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273 L+QE +L + +++ F + L + T +T + VL + P Sbjct: 576 LEQEAYALAGQP-FNLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAEDYPLP 634 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + + R ++ + L + +N T + TGR + QN+P + Sbjct: 635 KLLLDYR-GLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRLASTDPNLQNIPVRT 693 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A G +V AD + IE R++A ++ Sbjct: 694 EEGRR-------------------------IREAFVAPAGSVIVSADYSQIELRIMAHLS 728 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G+ ++AF G+D++ T A F V P +VT +QR KV+ L Y A Sbjct: 729 GDDGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSA-----FGL 783 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + L + A + + + + ++ E + G Sbjct: 784 ASNLGIGRDAAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLP-----DI 838 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + +A G A K + + + + Sbjct: 839 NGGNGPRRQAAERAAINAPMQGTAADLIKLSMLAVQDWLEGS---------------PNA 883 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + + + ++Q +V Sbjct: 884 DKPGTPMRSRL----------------VMQ-------------VHDE-----------LV 903 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P + L LM +PL AE + Sbjct: 904 LEVPQDELARVRERLPELMCGVA--LLSVPLVAEVGVGSNW 942 >gi|76818134|ref|YP_336009.1| DNA polymerase I [Burkholderia pseudomallei 1710b] gi|254186142|ref|ZP_04892660.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237] gi|254264752|ref|ZP_04955617.1| DNA polymerase I [Burkholderia pseudomallei 1710a] gi|76582607|gb|ABA52081.1| DNA polymerase I [Burkholderia pseudomallei 1710b] gi|157933828|gb|EDO89498.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237] gi|254215754|gb|EET05139.1| DNA polymerase I [Burkholderia pseudomallei 1710a] Length = 923 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVL 398 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 506 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + L+QE Sbjct: 507 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVALEQEAY 566 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F L + T + T + VL + P + + Sbjct: 567 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N D T + TGR + QN+P + Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 683 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A G K+V AD + IE R++A ++ ++ L Sbjct: 684 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 719 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 825 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 867 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL E Sbjct: 868 -------------RARM--------IMQ-------------VHDE---LVL--------E 882 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|86747974|ref|YP_484470.1| DNA polymerase I [Rhodopseudomonas palustris HaA2] gi|86571002|gb|ABD05559.1| DNA polymerase I [Rhodopseudomonas palustris HaA2] Length = 1032 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 92/694 (13%), Positives = 194/694 (27%), Gaps = 168/694 (24%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDP--------------------VMPQVLKEALENTDV 66 + A + H + L+ L++ + Sbjct: 456 QAELCGIALSLGPNDACYIPLGHRQTGDGSGLFAAGLAPDQLGARDVLDALRPLLDSAGL 515 Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEA-LKLSSQK 122 + N F +L + + +++ L A+ E+ L + Sbjct: 516 AKIGFNIKFTAVLLAQH---GVTLRNIDDVQLISYVLDAGRGSHGLDALSESNLGHTLHV 572 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--S 180 + + EY V +++ L+P Sbjct: 573 LGAL-------------TGSGKAKIAFDQVPIDRATEYGGERSDVALRLWRVLKPRLVAE 619 Query: 181 KEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + ++ + + RG +D + L+ +++ E+ L + + Sbjct: 620 RMMAVYETLERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEAEIRELAGEDI-N 678 Query: 233 SRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 ++L LF + GL T+ +T +VL + + + + + S+ Sbjct: 679 IGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRS 738 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + L ++ + T L A+ TGR S QN+P + + Sbjct: 739 TYTDALPTYVHPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRK---------- 788 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 +R +A+ G +LV AD + IE R+L+ +A KAF+ G D+ Sbjct: 789 ---------------IRRAFVATPGHRLVSADYSQIELRLLSEVADVPALRKAFQDGIDI 833 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + T + F V + D R K + G++ Sbjct: 834 HAMTASEMFGVPVEGMPSDIRRRAKAINF--------------GIIYGIS---------- 869 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 A + K + ++ + +E Sbjct: 870 --------------------AFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDETRDFC 909 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 + + GR Y D+ + + Sbjct: 910 RT--------------------------HGYVETLFGRKCHYPDIKASNP---SIRAFNE 940 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDE- 641 R Q + DI+ M+ K ++L VHDE++ E P+ + Sbjct: 941 RAAINARL------QGSAADIIRRAMVRMEDALAEKKLAAQMLLQVHDELIFEVPEDEVT 994 Query: 642 FNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++ H+M P+ +PL+ + + + Sbjct: 995 ATLPVVSHVMQDAPFPAVILNVPLQVDARAADNW 1028 >gi|254193866|ref|ZP_04900298.1| DNA polymerase I [Burkholderia pseudomallei S13] gi|169650617|gb|EDS83310.1| DNA polymerase I [Burkholderia pseudomallei S13] Length = 923 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 506 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + L+QE Sbjct: 507 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTLEQEAY 566 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F L + T + T + VL + P + + Sbjct: 567 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N D T + TGR + QN+P + Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 683 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A G K+V AD + IE R++A ++ ++ L Sbjct: 684 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 719 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 825 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 867 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL E Sbjct: 868 -------------RARM--------IMQ-------------VHDE---LVL--------E 882 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|167829103|ref|ZP_02460574.1| DNA polymerase I [Burkholderia pseudomallei 9] Length = 923 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 506 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + L+QE Sbjct: 507 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 566 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F L + T + T + VL + P + + Sbjct: 567 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N D T + TGR + QN+P + Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 683 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A G K+V AD + IE R++A ++ ++ L Sbjct: 684 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 719 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 825 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 867 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL E Sbjct: 868 -------------RARM--------IMQ-------------VHDE---LVL--------E 882 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|91975436|ref|YP_568095.1| DNA polymerase I [Rhodopseudomonas palustris BisB5] gi|91681892|gb|ABE38194.1| DNA polymerase I [Rhodopseudomonas palustris BisB5] Length = 1033 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 99/694 (14%), Positives = 195/694 (28%), Gaps = 168/694 (24%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDP--------------------VMPQVLKEALENTDV 66 + A + H LK LE+ + Sbjct: 457 QAELCGIALALAPNDAAYIPLGHRQTGDGSGLFAAGLAPDQLGAREALDALKPLLESAGL 516 Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEA-LKLSSQK 122 + N F +L I + +++ + L A+ E+ L + Sbjct: 517 AKIGFNIKFTAVLLAQH---GITLRNIDDLQLMSYALDAGRGSHGLDALSESNLGHTLHA 573 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--S 180 + E + EY V +++ L+P Sbjct: 574 LGEL-------------TGSGKAKIGFDQVPIERATEYAGERADVALRLWRVLKPRLVAE 620 Query: 181 KEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + ++ + + RG +D ++ L+ +++ E+ L + + Sbjct: 621 RMMAVYETLERPLVGVLARMERRGISIDRSVLSRLSADFAQTAARIEAEIRELAGEDI-N 679 Query: 233 SRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 ++L LF + GL T+ +T +VL + + + + + S+ Sbjct: 680 IGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRS 739 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + L ++ + T L A+ TGR S QN+P + + Sbjct: 740 TYTDALPNYVHPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRK---------- 789 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 +R IAS G KLV AD + IE R+L+ +A KAF+ G D+ Sbjct: 790 ---------------IRRAFIASPGYKLVSADYSQIELRLLSEVAEVPALRKAFQDGIDI 834 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + T + F V + + R K + G++ Sbjct: 835 HAMTASEMFGVPVEGMPSEIRRRAKAINF--------------GIIYGIS---------- 870 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 A + K + ++ + +E Sbjct: 871 --------------------AFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDETRDFC 910 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 + + GR Y D+ + + Sbjct: 911 R--------------------------AHGYVETLFGRKCHYPDIKASNP---SIRAFNE 941 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEF 642 R Q + DI+ M K ++L VHDE++ E PD + Sbjct: 942 RAAINARL------QGSAADIIRRAMGRMEDALAEKKLSAQMLLQVHDELIFEVPDDEVA 995 Query: 643 N-ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++ H+M P+ +PL+ + + + Sbjct: 996 ATLPVVRHVMQDAPFPAVLLNVPLQVDARAADNW 1029 >gi|238898050|ref|YP_002923731.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465809|gb|ACQ67583.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 963 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 107/699 (15%), Positives = 209/699 (29%), Gaps = 150/699 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 ID ET + +I +F HD + Sbjct: 381 AIDTETDGLD----------TKTAHLIGISFAVAPGKAAYLPLGHDYPEAPAQLNRDKVL 430 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 + K LE+ V N F++++L + + T++ + + + Sbjct: 431 ALFKPLLEDPQALKVGQNLKFDQSLLANY-GIKLQGIA-FDTMLESYVFNSVAGRHDMDS 488 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ Y D VT + Sbjct: 489 LSERH------------LNHKTLSFEDIAGKGKNQLTFNQIPLEQAAIYAAEDADVTLRL 536 Query: 172 FKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQ 220 L P + +L + Q I G +D + ++ + + T+L++ Sbjct: 537 HLALWPKLKENPDLMKVLQEIEMPLLSVLSRMERTGVMIDPDILLNHSKELQLRLTELEK 596 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T L+ + L + T +T + VL+ P + Sbjct: 597 KAHDIAG-ETFNLNSTQQLQTILYEKQTLPVLKKTPKGAPSTNEAVLAELALDYPLPKII 655 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 +R ++ + L ++ GR+ + + TGR S QN+P + Sbjct: 656 LEHR-SLTKLKTTYTDKLPLMIHPLSGRVHTSYHQAV-TSTGRLSSRDPNLQNIPVRNEE 713 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA G ++V AD + IE R++A ++ + Sbjct: 714 GRR-------------------------IRHAFIAPRGYQIVAADYSQIELRIMAHLSQD 748 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 Q L AF G+D+++ T A F + +QV+ QR K + L Y A Sbjct: 749 QGLLNAFSEGQDIHLITAAEVFGLPVSQVSAQQRRSAKAINFGLIYGMSA-----FGLAR 803 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 LN++ F N + ++ + +E ++ G + + Sbjct: 804 QLNVSRFEAERYMNLYFTHYPKVLDYMQRTREEAVKNGYVTTLEGRRLYLADIHSKNANR 863 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + G A KR + + + + + + R Sbjct: 864 R-----KAAEREAINAPMQGTAADIIKRAMIHIDFWLQQEEQKLAPKQKSR--------- 909 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 I+Q VHDE+V E Sbjct: 910 ----------------------VNLIMQ------------------------VHDELVFE 923 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 D+ +A + LM + + L LK + + Sbjct: 924 VHDSVLKSATDKIRELMEKS---TQNLLLKVDIGFGNNW 959 >gi|148239953|ref|YP_001225340.1| DNA polymerase I [Synechococcus sp. WH 7803] gi|147848492|emb|CAK24043.1| DNA polymerase I [Synechococcus sp. WH 7803] Length = 996 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 107/710 (15%), Positives = 207/710 (29%), Gaps = 155/710 (21%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHDPV--------- 52 + +D ET ++ + + H Sbjct: 400 VAVDTETTDLNPFK----------AQLVGIGVCWGAGLSDLAYIPVGHTDPALTQLPLEV 449 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110 + + L L + N+ ++R +L L + + TL+ +L Sbjct: 450 VLEQLAPWLSSPSHPKALQNAKYDRLILLRH-GLVL-GGVVMDTLLADYLRDAAAKHSLD 507 Query: 111 AVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E ++ +L+ + + YC DV +TR Sbjct: 508 GMAERDYGITP---TLFSDLV--------GKAKDGKASCFAEVPSDQAALYCAMDVHLTR 556 Query: 170 EIFKRLEPLSS------------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + L E L + + G +D++ TL++ + T+ Sbjct: 557 RLAIDLRQQLQASGEQLTNLLDQVELPLEPVLALMEATGIRIDLSYLDTLSKEMGETLTR 616 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLTPQ 272 L+ + + + ++L LF GL + +T VL P Sbjct: 617 LEADAKQAAGVD-FNLASPKQLGELLFETLGLDRKKSRRTKTGYSTDATVLDKLADDHPV 675 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 V +R+ S+ ++ L + + GR+ + TGR S QN+P Sbjct: 676 VPLVLEHRV-LSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQNIPV 733 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + S +R + E L+ AD + IE R+L Sbjct: 734 RTE-------------------------YSRRIRKAFLPQEHWTLLSADYSQIELRILTH 768 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++GE+ +A+ G+D++ T + V+ D+R +GK + + Y GA Q+ Sbjct: 769 LSGEEVLQQAYRDGDDVHALTARLL--LEKDDVSADERRLGKTINFGVIYGMGA---QRF 823 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A TG++ + E + F + + +G Sbjct: 824 ARETGVS--QTDAKEFLSKYRERYPKVFAFLELQERLALSRGYVETIMG----------- 870 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 R P + + L+ P Sbjct: 871 --------------------------------RRRPFHFDRNGLGRLLGKDPF------- 891 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625 ++ + + Q R +Q S DI+ M+ A ++ Sbjct: 892 EIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKLAMIQLQAALQQHSLPARLL 945 Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 L VHDE+V E + + ++ M +PL AE + Sbjct: 946 LQVHDELVLEVEPSALDDVKALVVSTMEKAVE--LSVPLVAETGVGSNWM 993 >gi|238797621|ref|ZP_04641117.1| DNA polymerase I [Yersinia mollaretii ATCC 43969] gi|238718485|gb|EEQ10305.1| DNA polymerase I [Yersinia mollaretii ATCC 43969] Length = 932 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 105/701 (14%), Positives = 203/701 (28%), Gaps = 154/701 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 D ET L+ +I +F HD Sbjct: 353 DVFAFDTETDGLDTLSNN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRD 402 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + LK LE+ V N F++++L +++ T++ + Sbjct: 403 WVLATLKPLLEDDKALKVGQNLKFDQSMLARY-GIELRGIA-FDTMLESYVLNSVAGRHD 460 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + ++ E L + E ++ A G Y D VT Sbjct: 461 MDSLAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYASEDADVT 508 Query: 169 REIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 ++ L P E L + I G +D + ++ + + + Sbjct: 509 LQLHLVLWPKLQESEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDE 568 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+++ L + ++L+ L+ + L + T +T + VL+ P Sbjct: 569 LEKQAHEL-AEEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLP 627 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + R ++ + L +N GR+ + + TGR S QN+P Sbjct: 628 KVILEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVR 685 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +R IA +G +++ AD + IE R++A + Sbjct: 686 NEEGRR-------------------------IRQAFIAPQGYRIMAADYSQIELRIMAHL 720 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + +VT +QR K + L Y A Sbjct: 721 SQDEGLLTAFAAGKDIHRATAAEVFGLPLEKVTSEQRRSAKAINFGLIYGMSA-----FG 775 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 LN+ + E + + ++ + G R Sbjct: 776 LARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRN 835 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + R + G A KR + + + + ++ + Sbjct: 836 ANRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRV---------- 880 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 I+Q +V VH E Sbjct: 881 ----------------------------IMQ-------------VHDE---LVFEVH-ES 895 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E+ + + LM + A +PLK + + Sbjct: 896 VLESAE------QKIRELMEQSMQLA--VPLKVDVGVGDNW 928 >gi|167907515|ref|ZP_02494720.1| DNA polymerase I [Burkholderia pseudomallei NCTC 13177] gi|217422462|ref|ZP_03453965.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576] gi|254184913|ref|ZP_04891502.1| DNA polymerase I [Burkholderia pseudomallei 1655] gi|184215505|gb|EDU12486.1| DNA polymerase I [Burkholderia pseudomallei 1655] gi|217394693|gb|EEC34712.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576] Length = 923 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 506 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + L+QE Sbjct: 507 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 566 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F L + T + T + VL + P + + Sbjct: 567 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N D T + TGR + QN+P + Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 683 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A G K+V AD + IE R++A ++ ++ L Sbjct: 684 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 719 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 825 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 867 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL E Sbjct: 868 -------------RARM--------IMQ-------------VHDE---LVL--------E 882 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|126456399|ref|YP_001076435.1| DNA polymerase I [Burkholderia pseudomallei 1106a] gi|242312260|ref|ZP_04811277.1| DNA polymerase I [Burkholderia pseudomallei 1106b] gi|126230167|gb|ABN93580.1| DNA polymerase I [Burkholderia pseudomallei 1106a] gi|242135499|gb|EES21902.1| DNA polymerase I [Burkholderia pseudomallei 1106b] Length = 923 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVL 398 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 506 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + L+QE Sbjct: 507 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 566 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F L + T + T + VL + P + + Sbjct: 567 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N D T + TGR + QN+P + Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 683 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A G K+V AD + IE R++A ++ ++ L Sbjct: 684 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 719 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 825 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 867 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL E Sbjct: 868 -------------RARM--------IMQ-------------VHDE---LVL--------E 882 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|269103720|ref|ZP_06156417.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP 102761] gi|268163618|gb|EEZ42114.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP 102761] Length = 923 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 102/697 (14%), Positives = 194/697 (27%), Gaps = 152/697 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F ++ HD + Sbjct: 347 AFDTETDSLDYMV----------ANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRDWVL 396 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ + + N ++ +V+ +++ ++ T++ + + + Sbjct: 397 AQLKPLLEDPNQAKIGQNLKYDASVIARY-GIEMQGIKY-DTMLESYVYNSVVGRHDMDS 454 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L + E ++ G Y D +T + Sbjct: 455 LALRY------------LEHKNISFEEIAGKGKGQLTFNQIDLEQAGPYAAEDADITLRL 502 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + + G +D +Q + +L++ Sbjct: 503 HNALYPKVSADEKLLHVFSDIEMPLVPVLSRMERTGVLIDSMKLSAQSQEIAQRLDELEK 562 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + + ++L+ LF + GL T +T + VL P + Sbjct: 563 RAFEIADQ-EFNLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDYPLPKLI 621 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L + +N T + TGR S QN+P + Sbjct: 622 LEYR-GLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEG 680 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA +G K++ D + IE R++A ++G++ Sbjct: 681 RR-------------------------IRQAFIAPQGYKVLAIDYSQIELRIMAHLSGDK 715 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A + QV+ +QR K + L Y A Sbjct: 716 ALLDAFCHGKDIHAATAAEILGLPLDQVSSEQRRRAKAINFGLIYGMSA-----FGLAKQ 770 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L++ N+ E + + + E + G R R Sbjct: 771 LDMGRGEAQEYMNTYFERYPGVLEYMETTRTVASEQGYVETLFGRRLYLPDIKSRNGLRR 830 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 +A G A KR V + + SGR + V + Sbjct: 831 -----KAAERAAINAPMQGTAADIIKRAMVLVDEWIGQQE-------SGRVRLLMQVHDE 878 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 + + EI Sbjct: 879 LVFEVQES----------------------------------------------EI---- 888 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E A + LM S +PL A+ + + Sbjct: 889 ----ESVAQEIKTLMESAAQ--LDVPLIADIGYGENW 919 >gi|332886111|gb|EGK06355.1| hypothetical protein HMPREF9456_00229 [Dysgonomonas mossii DSM 22836] Length = 933 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 98/690 (14%), Positives = 196/690 (28%), Gaps = 145/690 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEA 60 D ET + ++ +F F + D + + Sbjct: 364 CFDTETTGLDPIVS----------ELVGMSFAFKEGEAYYVPVPADFDEAKKLIDKFRPF 413 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 EN + + N ++ VLK ++ + + T++ L+ + Sbjct: 414 FENEKILKIGQNIKYDIIVLKKY-DIHVR-GKLFDTMIAHYLINP---------ELRHNM 462 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 M E E +Y D VT ++ + LE Sbjct: 463 DYMAETYLKYRTIHIDELIGAKGKNQLNMRSLRPDQISDYACEDADVTLKLKRILEKAIE 522 Query: 181 KE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 K+ L Y+ + G +D ++ + +E ++ E+ L Sbjct: 523 KQDLSKLFYEIELPLIYVLADMEFTGVRLDTVALGEYSKTLTIELQNIESEIFKL-GETE 581 Query: 231 SSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + +++ LF + + T+T T + L S K P ++ R + Sbjct: 582 FNINSAKQVGEVLFDKLKIIDKPKKTKTGQYVTSEETLESIKNTHPIVNKILEYR-GLKK 640 Query: 286 SAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 ++ L + DG++ + + TGR S QN+P E Sbjct: 641 LLSTYIDALPLLVEPKDGKIHTSFNQ-TVTATGRLSSTNPNLQNIPIRDAQGRE------ 693 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +R IA EG AD + IE R++A ++ + ++AF + Sbjct: 694 -------------------IRKSFIADEGCLFFSADYSQIELRIMAHLSQDPSMVEAFNS 734 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GED++ T A+ + + +VT D R K + Y L + Sbjct: 735 GEDIHAATAAKIYKLKIDEVTSDMRRKAKTANFGIIYGISV-----FGLAERLTIPRGEA 789 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + E + + + + E + G +R +++ V Sbjct: 790 KELIDGYFETYPKVKEYMDKCITDAREKTYVETVFGR--KRYLPDINSRNATVRGY---A 844 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 + G A K +N Sbjct: 845 ERNAINAPIQGSAADIIK-----------------------------------VAMNNIF 869 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644 ++ +E ++L VHDE+ + + Sbjct: 870 KRFEKENI----------------------------KSKMILQVHDELNFNVLENEIDKV 901 Query: 645 SMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + M + A +PL+A+ + K + Sbjct: 902 QKIVIEEMENAYKLA--VPLRADCGKGKNW 929 >gi|238750767|ref|ZP_04612265.1| DNA polymerase I [Yersinia rohdei ATCC 43380] gi|238710911|gb|EEQ03131.1| DNA polymerase I [Yersinia rohdei ATCC 43380] Length = 932 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 106/698 (15%), Positives = 204/698 (29%), Gaps = 154/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET L+ +I +F HD + Sbjct: 356 AFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRQWVL 405 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ V N F++++L +D+ T++ + + + Sbjct: 406 DTLKPLLEDEKALKVGQNLKFDQSMLARY-GIDLRGIA-FDTMLESYVLDSVAGRHDMDS 463 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511 Query: 172 FKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P + E L + I G +D + ++ + + +L++ Sbjct: 512 HLVLWPKLQQSEGLKRVFQDIEMPLLPILSRIERTGVLIDQNILAAHSKELAIRLDELEK 571 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 572 QAHELAG-EPFNLASPKQLQVILYEKQQLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + + TGR S QN+P + Sbjct: 631 IEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA +G +++ AD + IE R++A ++ + Sbjct: 689 GRR-------------------------IRQAFIAPKGYRIMAADYSQIELRIMAHLSQD 723 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF G+D++ T A F + VT +QR K + L Y A Sbjct: 724 KGLLAAFAAGKDIHRATAAEVFGLPLEGVTTEQRRSAKAINFGLIYGMSA-----FGLAR 778 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 LN+ + E + + ++ + G R + Sbjct: 779 QLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDINSRNANR 838 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + G A KR + + + ++ ++ + Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQESAPLVRV------------- 880 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 I+Q +V VH E V E Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH-ETVLE 898 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + + LM + A +PLK + + Sbjct: 899 SAE------QKIRELMEQSMQLA--VPLKVDVGVGDNW 928 >gi|226195875|ref|ZP_03791462.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9] gi|225932360|gb|EEH28360.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9] Length = 876 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 302 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 351 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 352 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 409 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 410 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 459 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + L+QE Sbjct: 460 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 519 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F L + T + T + VL + P + + Sbjct: 520 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 578 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N D T + TGR + QN+P + Sbjct: 579 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 636 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A G K+V AD + IE R++A ++ ++ L Sbjct: 637 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 672 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 673 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 727 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 728 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 778 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 779 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 820 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL E Sbjct: 821 -------------RARM--------IMQ-------------VHDE---LVL--------E 835 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 836 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 872 >gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21] gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII] gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21] gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII] gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866] Length = 935 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 101/700 (14%), Positives = 200/700 (28%), Gaps = 155/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51 + +D ET S ++ ++ +F ++ + Sbjct: 359 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 408 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 +K LEN ++ + N F+ ++ +++ T++L+ + + Sbjct: 409 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 466 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G E IA E+ ++ EY D VT Sbjct: 467 DDLAKRY--------LGHETIAF----ESIAGKGKSQLTFNQIPLEQATEYAAEDADVTM 514 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L E L ++ + G +D + + T L Sbjct: 515 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSNALFMQSNEIATRLTAL 574 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 +++ +L + ++L+ LF + GL +T + VL Sbjct: 575 EEQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 632 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ S+ + L + +NS T + TGR S QN+P + Sbjct: 633 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 692 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA EG +V AD + IE R++A ++G Sbjct: 693 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 727 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF G+D++ +T A F V+ ++T +QR K + L Y A + Sbjct: 728 DQGLINAFSQGKDIHRSTAAEIFGVSLDEITSEQRRNAKAINFGLIYGMSA-----FGLS 782 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L ++ + + + + F ++E + G Sbjct: 783 RQLGISRADAQKYMDLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAM 842 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R + G A KR + L + D+ Sbjct: 843 RR-----KGAERVAINAPMQGTAADIIKRAMIKLDEVI---------------RHDPDI- 881 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 E I+Q +V Sbjct: 882 ------------------------EMIMQ-------------VHDE-----------LVF 893 Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + F + M + +PL E + + Sbjct: 894 EVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 931 >gi|238794563|ref|ZP_04638171.1| DNA polymerase I [Yersinia intermedia ATCC 29909] gi|238726143|gb|EEQ17689.1| DNA polymerase I [Yersinia intermedia ATCC 29909] Length = 932 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 104/698 (14%), Positives = 201/698 (28%), Gaps = 154/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET L+ +I +F HD + Sbjct: 356 AFDTETDGLDTLSSN----------LIGISFAVAPGEAAYLPLAHDYLDSPAQLDRDWVL 405 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ V N F++++L +++ T++ + + + Sbjct: 406 ATLKPLLEDDKALKVGQNLKFDQSMLARY-GIELRGIA-FDTMLESYVLDSVAGRHDMDS 463 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + I G +D + ++ + + +L++ Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 571 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 572 QAHEL-AEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + + TGR S QN+P + Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA +G +++ AD + IE R++A ++ + Sbjct: 689 GRR-------------------------IRQAFIAPKGYRIMAADYSQIELRIMAHLSQD 723 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF G+D++ T A F +VT +QR K + L Y A Sbjct: 724 KGLLAAFAAGKDIHRATAAEVFGTPLEKVTTEQRRSAKAINFGLIYGMSA-----FGLAR 778 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L++ + E + + ++ + G R Sbjct: 779 QLSIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNATR 838 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + G A KR + + + + ++ + Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRV------------- 880 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 I+Q +V VH E V E Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH-ESVLE 898 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + + LM + A +PLK + + Sbjct: 899 SAE------QKIRELMEQSMQLA--VPLKVDVGVGDNW 928 >gi|126443368|ref|YP_001063539.1| DNA polymerase I [Burkholderia pseudomallei 668] gi|126222859|gb|ABN86364.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 668] Length = 923 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 506 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + L+QE Sbjct: 507 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 566 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F L + T + T + VL + P + + Sbjct: 567 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N D T + TGR + QN+P + Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTTEGRR- 683 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A G K+V AD + IE R++A ++ ++ L Sbjct: 684 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 719 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 825 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 867 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL E Sbjct: 868 -------------RARM--------IMQ-------------VHDE---LVL--------E 882 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 928 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 104/695 (14%), Positives = 201/695 (28%), Gaps = 149/695 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ V V N ++R VL+ +++ T++ + +V Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S K + E ++ A G Y D VT ++ + Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + L + + G +D A+ H ++ + + +L+++ Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L+T LF + G+ T +T + VL P + Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L +N T + TGR S QN+P + Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA E +V AD + IE R++A ++ ++ L Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F + VT++QR K + L Y A + LN+ Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTREQRRSAKAINFGLIYGMSA-----FGLSRQLNI 779 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + E + + + E + G R + Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGR---------RLYLPDIKS 830 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + P+ Sbjct: 831 ---------------------------SNAARRAGAERAAINAPT--------------- 848 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDEIVCETPD 638 T + R + +Q + M+ +V VH D Sbjct: 849 QGTAADIIKRAMI----AVDAWIQ---AEQPRVRMIMQVHDE---LVFEVH-------KD 891 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + A ++ LM + +PL E + + Sbjct: 892 DLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|238785638|ref|ZP_04629616.1| DNA polymerase I [Yersinia bercovieri ATCC 43970] gi|238713473|gb|EEQ05507.1| DNA polymerase I [Yersinia bercovieri ATCC 43970] Length = 932 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 105/698 (15%), Positives = 204/698 (29%), Gaps = 154/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET L+ +I +F HD + Sbjct: 356 AFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVL 405 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ V N F++++L +++ T++ + + + Sbjct: 406 ATLKPLLEDEKALKVGQNLKFDQSMLARY-GIELRGIA-FDTMLESYVLNSVAGRHDMDS 463 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEEAGPYASEDADVTLQL 511 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + I G +D + ++ + + +L++ Sbjct: 512 HLVLWPKLQESEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 571 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 572 QAHEL-AEEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + + TGR S QN+P + Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA +G +++ AD + IE R++A ++ + Sbjct: 689 GRR-------------------------IRQAFIAPKGYRIMAADYSQIELRIMAHLSQD 723 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF G+D++ T A F + +VT +QR K + L Y A Sbjct: 724 EGLLAAFAAGKDIHRATAAEVFGLPLEKVTTEQRRSAKAINFGLIYGMSA-----FGLAR 778 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 LN+ + E + + ++ + G R + Sbjct: 779 QLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNANR 838 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + G A KR + + + ++ ++ + Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQESEPLVRV------------- 880 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 I+Q +V VH E V E Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH-ESVLE 898 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + + LM + A +PLK + + Sbjct: 899 SAE------QKIRELMEQSMQLA--VPLKVDVGVGDNW 928 >gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638] gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638] Length = 932 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 109/698 (15%), Positives = 204/698 (29%), Gaps = 154/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET L+ +I F+F HD + Sbjct: 356 AFDTETDGLDTLSSN----------LIGFSFAVAPGEAAYLPVAHDYLDAPTQLDRNWVL 405 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ V N F++++L ++++ T++ + + + Sbjct: 406 AQLKPLLEDEKALKVGQNLKFDQSMLARY-DIELRGIA-FDTMLESYVLDSVAGRHDMDS 463 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + I G +D + ++ + + +L++ Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 571 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 572 QAHEL-AEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + + TGR S QN+P + Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPISGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA +G +++ AD + IE R++A ++ + Sbjct: 689 GRR-------------------------IRQAFIAPKGYRIMAADYSQIELRIMAHLSQD 723 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 Q L AF G+D++ T A F + +VT DQR K + L Y A Sbjct: 724 QGLLTAFAAGKDIHRATAAEVFGLPLEKVTNDQRRSAKAINFGLIYGMSA-----FGLAR 778 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 LN+ + E + + ++ E G R Sbjct: 779 QLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATR 838 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + G A KR + + + + ++ + Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRV------------- 880 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 I+Q +V VH E V E Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH-ESVLE 898 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + + LM + A +PLK + + Sbjct: 899 SAE------QKIRELMEQSMQLA--VPLKVDVGVGDNW 928 >gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT] gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT] Length = 910 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 113/699 (16%), Positives = 204/699 (29%), Gaps = 156/699 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------M 53 + +D ET S + ++ +F + HD Sbjct: 335 VALDTETTSLDPM----------QAKLVGMSFSVEAGKAAYVPLAHDYTGAPQQLDFTAA 384 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKA 111 + L+ LE+ + + N +++ VL + + TL+ + + Sbjct: 385 LRQLRPMLEDASIPKLGQNLKYDKHVLANH-GIALNGIT-HDTLLQSYVLESHRTHGMDD 442 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L + E + P + + EY D +T ++ Sbjct: 443 LAMRH------------LGVQTVTYEQIAGKGAKQVPFSQISIETAAEYAAEDADITLQL 490 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E L + TI G +D A+ + + + L+Q Sbjct: 491 HQALYPQIEADDKLAFVYREIEMPLLDILYTIERNGVLIDQAMLQAQSHEIGQKLIDLEQ 550 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276 + + + ++L+ LF + G+ T + T + VL P + Sbjct: 551 QAYDIAGQP-FNLGSPKQLQEILFGKLGIKPLKKTPSGAPSTDEDVLQELALDYPLPKVL 609 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + A TGR + QN+P + Sbjct: 610 LEYR-GLAKLKSTYTDKLPRMINPATGRVHTSYSQAVA-ITGRLASSDPNLQNIPVRTAE 667 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA G ++ AD + IE R++A ++ + Sbjct: 668 GRR-------------------------IREAFIAPPGASIISADYSQIELRIMAHLSQD 702 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF GED++ T A F V +V+ +QR KV+ L Y A Sbjct: 703 EGLLSAFAKGEDIHRATAAEIFGVPRDEVSSEQRRYAKVINFGLIYGMSA-----FGLAQ 757 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 LN+ A + + + + + E + F G + Sbjct: 758 NLNIERGAAQNYIDRYFARYPGVREYMQNTRMLAKEQGYVETFFGRRLWVPEINSPNGMR 817 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R +A G A K + + R L ++ + Sbjct: 818 R-----AGAERAAINAPMQGTAADLIKLAMIAVD----------------RWLREHNLNS 856 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 I+Q VHDE+V E Sbjct: 857 KI-----------------------IMQ------------------------VHDELVLE 869 Query: 636 TPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 PD + L LM +PL AE K + Sbjct: 870 VPDAELELVQQTLPQLMQGVAK--LDVPLLAEVGVGKNW 906 >gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Magnetospirillum magnetotacticum MS-1] Length = 926 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 104/709 (14%), Positives = 188/709 (26%), Gaps = 168/709 (23%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DP------------ 51 D ET L ++ + +H Sbjct: 341 FDTETTGLDPLR----------AKLVGVSLALAPGRACYIPVMHSSGEAQGDLLGGPSAD 390 Query: 52 --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 + LK L + V V HN ++ V+ L + I + T++L+ Sbjct: 391 APKLIPAADILARLKPLLADPAVLKVGHNIKYDMQVMA---GLGLAIQSFDDTMLLSYVL 447 Query: 104 GL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 L + + G I+ R Y Sbjct: 448 DGASHGHGLDELCL--------LHLGHRNISF----AEVCGSGRNQVTFDRVPLDKACAY 495 Query: 161 CKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T + L+P + E+ L + + G VD L++ Sbjct: 496 AAEDADMTLRLHGLLKPRLLLERMVSVYETLERPLVPVIAAMERDGIKVDRPQLMALSED 555 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266 T+L+ E+ +L G + ++L LF L T+T T VL Sbjct: 556 FGRRLTELETEVVALNNGEAFNLGSPQQLGKVLFETLNLPGGKKTKTGQWATGADVLEDL 615 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 L P ++ + R S+ + LV +N T L A+ TGR S Sbjct: 616 AHLHPLPARLLDWRQ-LSKLKGTYTDALVAQINPATGRVHTSYALAATTTGRLSSSDPNL 674 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P + + +R +A GK+L+ AD + IE Sbjct: 675 QNIPIRTEEGRK-------------------------IRHAFVAEPGKRLISADYSQIEL 709 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A +A + AF G D++ T ++ F V + R K + + Y Sbjct: 710 RLVAHVAEIEGLRDAFADGADIHAITASQVFGVPLDGMDSALRRRAKAINFGIIYGISP- 768 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 L + + + + F +E E G Sbjct: 769 ----FGLAAQLGIPQGEAKAYIEAYFARYPEIRTFMERTKEEAREKGFVTTLFGRKVFT- 823 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + + + E+ NG Sbjct: 824 --------PGIKDKNGAMRAFAERAAING------------------------------- 844 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG-MMNATKAGYDIV 625 + R + L ++ +V Sbjct: 845 -----------PIQGGAADIIKRAMIRLPAALV-------AEGLKARLLLQVHDE---LV 883 Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 L E P+ + E ++ +M + + +PL E + + Sbjct: 884 L--------EAPEDETEATVRVVKRVMEAAAT--LSVPLLVEAGIADSW 922 >gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000] gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000] Length = 946 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 97/701 (13%), Positives = 186/701 (26%), Gaps = 147/701 (20%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 + ID ET S + ++ + + H Sbjct: 358 VCIDTETTSIDPML----------AQLVGLSLSVEPGQACYIPVAHRGPDVSGLDAAGQL 407 Query: 51 --PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108 + +K LE+ V + ++ V + + T++ + Sbjct: 408 SREAVLARMKPWLEDAARKKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRN 465 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 A ++ K E EY D +T Sbjct: 466 HGMDALAERVLHLKTIT----------YEEVCGKGASQIGFDEVPLDRATEYAAEDADIT 515 Query: 169 REIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + + L P E + Q + G +D + + + Sbjct: 516 LRLHRALYPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDAERLARQSTGLGQRLLE 575 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273 L+Q+ +L + +++ F + L + T +T + VL + P Sbjct: 576 LEQQAYALAGQP-FNLNSPKQIGEIFFTQLKLPVIKKTASGAPSTDEEVLQKLAEDYPLP 634 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + + R ++ + L + +N T + TGR + QN+P + Sbjct: 635 KLLLDFR-GLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRLASTDPNLQNIPVRT 693 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A G +V AD + IE R++A ++ Sbjct: 694 EEGRR-------------------------IREAFVAPAGSVIVSADYSQIELRIMAHLS 728 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ L+AF G+D++ T A F V P +VT +QR KV+ L Y A Sbjct: 729 EDEGLLRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSA-----FGL 783 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + L + A + + + + + E + G Sbjct: 784 ASNLGIGRDAAKLYIDRYFARYPGVARYMDETRLVAHERGYVETVFGRRLWLP-----DI 838 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + +A G A K + + + Sbjct: 839 NGGNGPRRQAAERAAINAPMQGTAADLIKLSMLAVQDW---------------------L 877 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + S TR+ ++Q +V Sbjct: 878 DGSPSAGKPGAPMRTRQ----------VMQ-------------VHDE-----------LV 903 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P + L LM S +PL AE + Sbjct: 904 LEVPQEELSLVRERLPELMCGVAS--LRVPLVAEVGVGANW 942 >gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405] gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405] Length = 936 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 112/707 (15%), Positives = 212/707 (29%), Gaps = 172/707 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQ--VL 57 D ET S L + V F+ + + P+ Sbjct: 362 SYDCETTSEDPL----------NAEVCGFSLALKEGEAYYFPLKAPCPELGEEAPKLIAF 411 Query: 58 KEA------LENTDVTIVAHNSYFERTV-LKACFNLDIPIHRWICTLVLARSNGL---PS 107 K+A L ++ +T++ HN F+ L + I T++ A Sbjct: 412 KDAKKAVTKLFDSKMTLIMHNGKFDIQAALSSKLASGIS-ANLFDTMIAAWLLDPARSSY 470 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 + + E+ + K K+L+ + + + Y D + Sbjct: 471 GMDKLAES--ILGVKTIRFKDLVK-------------QGQNFSDIPLKEACPYAAEDADI 515 Query: 168 TREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 T +K+ PL K + L + +G + ++ + E Sbjct: 516 TFRFYKKFLPLLKKNNLEKLFFDLEMPITKLLTEMEIKGIFLKGEELTAYSKELGKELED 575 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI 274 ++++ L + ++L+ LF E L T+ +T VL + P Sbjct: 576 CEKDIYRLVGH-EFNIASPKQLQEVLFEERKLTPGKKTKTGYSTDTSVLENLASEDPVPA 634 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ + R ++ +TL + + +GR+ + G + TGR S QN+P Sbjct: 635 KILDYR-ALAKLKSTYTDTLPKMTDKNGRIHTSFIQTG-TATGRLSSRDPNLQNIPIRGN 692 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 + +R A +G+ L+ AD + IE +LA ++ Sbjct: 693 EGRK-------------------------IREAFQAEKGRVLISADYSQIELVILAHLSK 727 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q ++AF TG D++ T + F V V++D R I K + Sbjct: 728 DQNLVEAFNTGIDVHAKTASLIFAVDIKDVSQDMRRIAKTIN--------------FGVM 773 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ A + KA+ + Sbjct: 774 YGMS------------------------------AFRLASSLRIPRKRADEFIKAYFATY 803 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 S VS + Q EQ + GR + Sbjct: 804 SGVSGFMANVCQEAEQ--------------------------RGYVETLMGRRRYLPAIN 837 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 + R +Q + DI+ M+ KA I+L V Sbjct: 838 SKNKVEK---AGAERIA------VNTPIQGTAADIVKLAMLEVDKALKKQKLDASILLQV 888 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 HDE++ E +++ E S++ M +PL+ + Sbjct: 889 HDELIIEAAESEREKVMSLVKEKMEGVIK--LSVPLRVSIESGMSWG 933 >gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004] gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Xenorhabdus bovienii SS-2004] Length = 932 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 106/700 (15%), Positives = 196/700 (28%), Gaps = 155/700 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHD----------PV 52 D ET LT + + FA + VE HD Sbjct: 353 SFDTETDGLDTLTVNLVG--------MSFAIAVGESEVEAAYLPLGHDYLDAPEQLDLHE 404 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL-PSALK 110 + LK LE+ ++ + N F+R VL D+ ++ T++ + Sbjct: 405 VLAALKPLLEDANLPKIGQNLKFDRGVLARY---DVALNGIVFDTMLESYVLNSVSGRHD 461 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A + K +E + ++ +Y D VT Sbjct: 462 MDSLADRHLGYKTTTFEE----------IAGKGKKQLTFNQIPLEEAAKYAAEDADVTLR 511 Query: 171 IFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + + P E L + I G +D + + +L+ Sbjct: 512 LHQVMYPQIDSVPTLKSVFQNIEMPLVPVLSRIERTGVLIDAQTLAEHSTEITARLGELE 571 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 + L + ++L+ LF + L + T +T + VL Sbjct: 572 KAAYELAG-EEFNLASPKQLQVILFEKLNLPVLKKTPNGAPSTNEEVLEELADNHELPRV 630 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +R ++ + L + +N + T + TGR S QN+P + Sbjct: 631 ILEHR-GLAKLKSTYTDKLPQMVNPLTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRNDE 689 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA EG ++ AD + IE R++A ++ + Sbjct: 690 GRR-------------------------IRQAFIAPEGYCIMAADYSQIELRIMAHLSQD 724 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L+AF G+D++ T A F V +VT +QR K + L Y A + Sbjct: 725 KGLLEAFAQGKDIHSATAAEVFGVPLEEVTSEQRRSAKAINFGLIYGMSA-----FGLSR 779 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L++ + E + + ++ EH + G R Sbjct: 780 QLSIPRGEAQRYMDLYFERYPGVLAYMERTRQQAAEHGFVETLEGRRLYLPDIKSRNAMR 839 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + G A K + + P+ R Sbjct: 840 R-----KASEREAINAPMQGTAADIIKLAMIAVDNWIVS------EQPNVR--------- 879 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDEIVC 634 M+ +V VH Sbjct: 880 --------------------------------------MIMQVHDE---LVFEVH----- 893 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++ A + LM + +PLK + + Sbjct: 894 ---ESELATAEQKISELMEKSMQ--LDVPLKVDVGIGINW 928 >gi|282880586|ref|ZP_06289293.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1] gi|281305689|gb|EFA97742.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1] Length = 920 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 99/694 (14%), Positives = 198/694 (28%), Gaps = 147/694 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPV---MPQVL 57 L +D ET S A + ++ +F H + + + Sbjct: 348 KILSLDTETTSTN----------AMEAELVGLSFSVAPHQAFYVPIPANREQTIKIVNLF 397 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K A EN + V N ++ VL +++ T++ + + E Sbjct: 398 KPAYENEAILKVGQNIKYDMEVLSRY-GIELK-GNLFDTMIAHYLLQPELRHNMDYMAEV 455 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + +ELI KG K A EY D +T ++ L Sbjct: 456 Y--LRYQTVHIEELIGPRGKG---------QKNMRDLAPNDIYEYACEDADITLQLKNIL 504 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 EP E L + + G +D +++ L+ ++ L Sbjct: 505 EPKLKEREVDQLFYQMEMPLVRVLTQMEMNGVRIDTKALQEVSESFTKRMNDLEAQIHQL 564 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + L + + R Sbjct: 565 AG-ESFNVSSPKQVGDILFEKLQIAEKPKKTKTGQFVTSEEELQKYATGNEIVTLILDYR 623 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N T + TGR S QN+P +E Sbjct: 624 -GLKKLLGTYVDALPKLINPQTGHIHTSFNQTVTATGRLSSSDPNLQNIPVRGEDGKE-- 680 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R C I +G AD + IE RV+A ++G++ ++ Sbjct: 681 -----------------------IRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHMIE 717 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ G D++ T A+ + VT+D+R K + Y L ++ Sbjct: 718 AFQEGYDIHAATAAKMYGKEMKDVTRDERTKAKRANFGIIYGITV-----FGLAERLGID 772 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + +++ ++ E + F Sbjct: 773 RGEAKQLIDGYFTTFPQVQSYMEQAKDMAREKGYVETFF--------------------- 811 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 +RR +P + + + + Sbjct: 812 --------------------HRRRYLPDINSQNATVRGFAERNA--------INAPIQGS 843 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 ++ Y EN +Q ++L VHDE+ ++ Sbjct: 844 AADIIKVAMIRIYERFKREN-IQ------------------SKMILQVHDELNFSVLPSE 884 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + + +PL A+ + Sbjct: 885 KEQVERIVLEEMQNA--YQLKVPLVADAGWGHNW 916 >gi|282901618|ref|ZP_06309536.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505] gi|281193494|gb|EFA68473.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505] Length = 988 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 98/705 (13%), Positives = 204/705 (28%), Gaps = 148/705 (20%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVHD-----------PVM 53 D ET + ++ + V H+ + Sbjct: 392 DTETTDLDP----------RNANLVGIGCCWGMGENDVAYIPLGHNITTNLEKNLQLNTV 441 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 L + L + D N+ F+R + K + + ++ + Sbjct: 442 LSTLDKILASRDYPKTFQNAKFDRLIFK-YQGVTLD-GVIFDPMLASYLLNPDHTHNLTD 499 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ ++ E + + K + YC V T ++ Sbjct: 500 LALRYLGLQLTE-------YDHIVQKSGKKEPQKTIADISIHTVANYCGKQVYATWQLVG 552 Query: 174 RLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 +L EQ L + + RG ++ A L+Q ++ + L+ + Sbjct: 553 KLREELNKIPALFKLLVDVEQPLEVVLAEMEHRGVIINSAYLQQLSQYIESDLATLEIKA 612 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLTP--QAIQ 275 + + ++L LF + GL + +T L +++ Sbjct: 613 TKIAG-EKFNLGSPKQLSYILFEKLGLSTKYSRKISTGYSTDAATLEKLQEVDETGFVDA 671 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R ++ ++ L E +N + T A+ TGR S QN+P + Sbjct: 672 IIEYR-TLAKLKSTYVDALPELVNHKTQRIHTSFNQTATATGRLSSSNPNLQNIPIRTA- 729 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 S +R + G +V AD + IE R+LA ++ E Sbjct: 730 ------------------------FSRQIRKAFLPESGWLMVAADYSQIELRILAHLSQE 765 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 ++A+ +D++ T F VT ++R K + + Y G F + Sbjct: 766 PMLIQAYSNNQDIHTLTAKLLF--DKEDVTSEERRFAKTINFGVIYGMGVLKFSR----- 818 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ-KH 514 ++ + + + +++ + +G + + + Sbjct: 819 STGVDKNIANEFIQKFNQRYPLVFTYLETIKKQAISQGYVETILGR------RRYFDFTN 872 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + E K K+ + L Sbjct: 873 KTLREF--------------------------------KGKDLQEIEL------------ 888 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHD 630 N L L R +Q S DI+ M+ + ++L VHD Sbjct: 889 NKLKNLGPYDAGLLRSAANAP------IQGSSADIIKIAMVRLHQVLRPYQTKLLLQVHD 942 Query: 631 EIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+V E P ++ + +M + +PL + + + + Sbjct: 943 ELVFEVPPSEWDELQLQIKSVMENAMK--LSVPLVVDVHVGENWM 985 >gi|319897650|ref|YP_004135847.1| DNA polymerase i [Haemophilus influenzae F3031] gi|317433156|emb|CBY81530.1| DNA polymerase I [Haemophilus influenzae F3031] Length = 935 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 102/700 (14%), Positives = 199/700 (28%), Gaps = 155/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51 + +D ET S ++ ++ +F ++ + Sbjct: 359 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 408 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 +K LEN D+ + N F+ ++ +++ T++L+ + + Sbjct: 409 TALAAIKPILENPDIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 466 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G E IA E+ ++ EY D VT Sbjct: 467 DDLAKRY--------LGHETIAF----ESIAGKGKGQLTFNQIPLEQATEYAAEDADVTM 514 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L E L ++ + G +D + + T L Sbjct: 515 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTAL 574 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 +++ +L + ++L+ LF + GL +T + VL Sbjct: 575 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 632 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ S+ + L + +NS T + TGR S QN+P + Sbjct: 633 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 692 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA EG +V AD + IE R++A ++G Sbjct: 693 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 727 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF G+D++ +T A F V+ +VT +QR K + L Y A + Sbjct: 728 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSA-----FGLS 782 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L ++ N + + + F ++ + G Sbjct: 783 RQLGISRADAQKYMNLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAM 842 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R + G A KR + + + D+ Sbjct: 843 RR-----KGAERVAINAPMQGTAADIIKRAMIKIDEVI---------------RHDPDI- 881 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 E I+Q +V Sbjct: 882 ------------------------EMIMQ-------------VHDE-----------LVF 893 Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + F + M + +PL E + + Sbjct: 894 EVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 931 >gi|220933279|ref|YP_002512178.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7] gi|219994589|gb|ACL71191.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7] Length = 903 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 104/707 (14%), Positives = 198/707 (28%), Gaps = 159/707 (22%) Query: 1 MATL------FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---- 50 M L D ET S + V+ +F HD Sbjct: 318 MKRLETAELFAFDTETTSLDYM----------QAQVVGVSFAVKTGEAAYLPLAHDYADA 367 Query: 51 ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 + LK LE+ + H+ ++R VL +++ T++ + Sbjct: 368 PQQLDRDETLKRLKPLLESARHKKLGHHLKYDRNVLLNH-GIELNGIE-HDTMLESYVLN 425 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 ++ + + + K L R E + P + Y D Sbjct: 426 STAS--------RHDMDSLAQ-KYLDYRTTHYEEVAGKGAKQIPFSQVRIEDATPYAAED 476 Query: 165 VTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 +T + + L P E L + + G VD + + Sbjct: 477 ADITLRLHEHLWPQLSAAEGQCRVYREIEMPLVPVLSRMERTGVKVDAERLFAQSHELAE 536 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKL 269 ++++E + G + ++++ L+ L +T + VL Sbjct: 537 RMGQIEREAHEVAGGA-FNLGSPKQIQEILYERQKLPVLRKTPKGQPSTAEDVLEQLALD 595 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQN 328 P + +R S+ + L E ++ D GR+ + A TGR S QN Sbjct: 596 YPLPKLILEHR-SLSKLKSTYTDKLPERIDPDTGRVHTSYHQAVA-STGRLSSSDPNLQN 653 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +P + +R +A G++LV AD + IE R+ Sbjct: 654 IPIRTEEGRR-------------------------IRQAFVAPSGRRLVAADYSQIELRI 688 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G+ L+AF G+D++ T A F V QV+ +QR K + L Y A Sbjct: 689 MAHLSGDAGLLRAFAEGQDIHRATAAEVFGVGLDQVSGEQRRAAKAINFGLIYGMSA--- 745 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 L + + + +++ +E + + G Sbjct: 746 --FGLARQLGIERGDAQDYVDRYFARYPGVKDYMESTREKARDLGYVETLFGR--RLYLP 801 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 ++ ++ + + G A KR + + ++ + Sbjct: 802 DINARNGQIRA---QAERVAINAPMQGTAADIIKRAMIQVDQWIRESRIPAV-------- 850 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLT 627 M+ +VL Sbjct: 851 ---------------------------------------------MILQVHDE---LVLE 862 Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V DE L M+ +PL E + Sbjct: 863 V-DE-------DAVDKVREELCVRMSQAAE--LKVPLVVEAGVGDNW 899 >gi|318603742|emb|CBY25240.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11] Length = 932 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 108/698 (15%), Positives = 203/698 (29%), Gaps = 154/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET L+ +I +F HD + Sbjct: 356 AFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVL 405 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ V N F++++L +D+ T++ + + + Sbjct: 406 AQLKPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIA-FDTMLESYVLDSVAGRHDMDS 463 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + I G +D + ++ + + +L++ Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 571 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 572 QAHEL-AEEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + + TGR S QN+P + Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA EG +++ AD + IE R++A ++ + Sbjct: 689 GRR-------------------------IRQAFIAPEGYRIMAADYSQIELRIMAHLSQD 723 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF G+D++ T A F ++ +VT +QR K + L Y A Sbjct: 724 KGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSA-----FGLAR 778 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 LN+ + E + + ++ E G R Sbjct: 779 QLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATR 838 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + G A KR + + + + ++ + Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRV------------- 880 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 I+Q +V VH E V E Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH-ESVLE 898 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + + LM + A +PLK + + Sbjct: 899 SAE------QKIRELMEQSMQLA--VPLKVDVGVGYNW 928 >gi|254301196|ref|ZP_04968640.1| DNA polymerase I [Burkholderia pseudomallei 406e] gi|157811158|gb|EDO88328.1| DNA polymerase I [Burkholderia pseudomallei 406e] Length = 923 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 104/699 (14%), Positives = 188/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 506 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + L++E Sbjct: 507 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEREAY 566 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F L + T + T + VL + P + + Sbjct: 567 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N D T + TGR + QN+P + Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTTEGRR- 683 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A G K+V AD + IE R++A ++ ++ L Sbjct: 684 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 719 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 825 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 867 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL E Sbjct: 868 -------------RARM--------IMQ-------------VHDE---LVL--------E 882 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|145630606|ref|ZP_01786386.1| DNA polymerase I [Haemophilus influenzae R3021] gi|144983996|gb|EDJ91438.1| DNA polymerase I [Haemophilus influenzae R3021] Length = 743 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 101/700 (14%), Positives = 199/700 (28%), Gaps = 155/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51 + +D ET S ++ ++ +F ++ + Sbjct: 167 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 216 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 +K LEN ++ + N F+ ++ +++ T++L+ + + Sbjct: 217 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 274 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G E IA E+ ++ EY D VT Sbjct: 275 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLEQATEYAAEDADVTM 322 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L E L ++ + G +D + + T L Sbjct: 323 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTAL 382 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 +++ +L + ++L+ LF + GL +T + VL Sbjct: 383 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 440 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ S+ + L + +NS T + TGR S QN+P + Sbjct: 441 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 500 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA EG +V AD + IE R++A ++G Sbjct: 501 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 535 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF G+D++ +T A F V+ +VT +QR K + L Y A + Sbjct: 536 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSA-----FGLS 590 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L ++ + + + + F ++ + G Sbjct: 591 RQLGISRPDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAM 650 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R + G A KR + + + D+ Sbjct: 651 RR-----KGAERVAINAPMQGTAADIIKRAMIKIDEVI---------------RHDPDI- 689 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 E I+Q +V Sbjct: 690 ------------------------EMIMQ-------------VHDE-----------LVF 701 Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + F + M + +PL E K + Sbjct: 702 EVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGKNW 739 >gi|123440424|ref|YP_001004418.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087385|emb|CAL10166.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 932 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 108/698 (15%), Positives = 203/698 (29%), Gaps = 154/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET L+ +I +F HD + Sbjct: 356 AFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVL 405 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ V N F++++L +D+ T++ + + + Sbjct: 406 AQLKPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIA-FDTMLESYVLDSVAGRHDMDS 463 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + I G +D + ++ + + +L++ Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 571 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 572 QAHEL-AEEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + + TGR S QN+P + Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA EG +++ AD + IE R++A ++ + Sbjct: 689 GRR-------------------------IRQAFIAPEGYRIMAADYSQIELRIMAHLSQD 723 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF G+D++ T A F ++ +VT +QR K + L Y A Sbjct: 724 KGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSA-----FGLAR 778 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 LN+ + E + + ++ E G R Sbjct: 779 QLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATR 838 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + G A KR + + + + ++ + Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRV------------- 880 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 I+Q +V VH E V E Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH-ESVLE 898 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + + LM + A +PLK + + Sbjct: 899 SAE------QKIRELMEQSMQLA--VPLKVDVGVGYNW 928 >gi|186686230|ref|YP_001869426.1| DNA polymerase I [Nostoc punctiforme PCC 73102] gi|186468682|gb|ACC84483.1| DNA polymerase I [Nostoc punctiforme PCC 73102] Length = 978 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 105/706 (14%), Positives = 206/706 (29%), Gaps = 160/706 (22%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVHD-------PVMPQVL 57 D ET + D ++ + V H ++ + L Sbjct: 392 DTETTALEP----------RDADLVGIGCCWGMQPDEVAYIPLGHKTGENLHKDLVLEGL 441 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115 + LE+ D N+ F+R VLK C +++ ++ + L +G+ Sbjct: 442 RPILESADYPKALQNAKFDRLVLK-CQGINLA-GVVFDPMLASYILNPDSSHNLMDLGQR 499 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 LIA+ + +YC D T + +L Sbjct: 500 YL----------GLIAKSYLDLVPKGK-----TIADIDIPSVADYCGMDAYSTFGLVPKL 544 Query: 176 EPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 EQ L + + G ++ A L+Q ++ E +L +E Sbjct: 545 REELDKIPTLSKLLVEVEQPLEAVLAQMEYTGVRINSAYLKELSQHLETELARLKEEATK 604 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLT--PQAIQVF 277 + + ++L LF + GL + + +T L ++ + Sbjct: 605 IAG-ENFNLGSPKQLSQILFEKLGLSTKHSRKIQTGFSTDAATLEKLQEDDKSGFVEAII 663 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R S+ ++ L + D + T A+ TGR S QN+P + Sbjct: 664 EYR-TLSKLKSTYVDALPALVRPDTQRVHTDFNQAATSTGRLSSSNPNLQNIPIRTA--- 719 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 S +R + G +V AD + IE R+LA ++ E Sbjct: 720 ----------------------FSRQIRKAFLPEAGWLMVAADYSQIELRILAHLSQEPI 757 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++A++ ED++ T F ++T ++R I K + + Y G+ F + Sbjct: 758 LVQAYQQNEDVHTVTGRLVF--EKEKITSEERGIAKTINFGVIYGMGSLRFSR-----ST 810 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 ++ E + + +++ + +G + + Sbjct: 811 GIDKNIANEFIKRFNERYPKVFAYLEQVKKEAIALGYVETILGR------RRYFD----- 859 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--- 574 S R L + Sbjct: 860 ------------------------------------------FTNNSLRRLKGSNPEDID 877 Query: 575 -NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVH 629 + L L R +Q + DI+ M+ + ++L VH Sbjct: 878 LSKLKNLGPYDAGLLRSAANAP------IQGSNADIIKIAMVRLHEVLKNYQARLLLQVH 931 Query: 630 DEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 DE+V E P + + +M + +PL E + + Sbjct: 932 DELVFEIPPDEWEELQPQIKSVMENAVQ--LSVPLLVEARVGENWM 975 >gi|254526888|ref|ZP_05138940.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str. MIT 9202] gi|221538312|gb|EEE40765.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str. MIT 9202] Length = 976 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 109/712 (15%), Positives = 198/712 (27%), Gaps = 160/712 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD---------- 50 + +D ET S + D ++ + + H Sbjct: 382 IVSLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQTKKETPNQLS 431 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPS 107 + L+ +E+ NS F+R + LD+ TL+ Sbjct: 432 IEDVFSKLRNWIEDPRKEKALQNSKFDRQIFFNH-GLDLK-GVTFDTLLADYLLNNQEKH 489 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L + L K + + +NK YC DV + Sbjct: 490 GLSEISFRL---------------FGFKPPSFKETVGKNKDFSFVDIGEASIYCGYDVFL 534 Query: 168 TREIFKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 T +I K + E L + + G +D+ L++ + Sbjct: 535 TFKIVKIFKERFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTL 594 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270 ++ ++ L + ++L LF + L + T+ +T VL Sbjct: 595 EDIESKVYEL-AEENFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEH 653 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 + +R S+ ++ L +N GR+ A+ TGR S QN+ Sbjct: 654 EIIQHLIKHR-TLSKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNI 711 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P + S +R + + KL+ AD + IE R+L Sbjct: 712 PVRTE-------------------------FSRRIRKAFLPEKNWKLLSADYSQIELRIL 746 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A E+ + AF +D++ T F Q++ ++R +GK + + Y G K Sbjct: 747 AHLADEEILINAFHKNDDIHSLTARLIF--EKEQISSEERRVGKTINFGVIYGMGIKK-- 802 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 A +TG++ E + F + G E Sbjct: 803 -FARSTGVSTPE--AKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK 859 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + K+ + L S R Sbjct: 860 -------------------------------------NGLGRLIGKDPYEIDLQSARR-- 880 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623 Q R +Q S DI+ M+ K Sbjct: 881 -----------AGMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKFIEMNVPAK 923 Query: 624 IVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE++ E ++ M +PL + + Sbjct: 924 MLLQVHDELLFEVEQDSLEITTKLVKKTMEDCVK--LNVPLLVDIGTGDNWM 973 >gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450] gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450] Length = 931 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 102/698 (14%), Positives = 193/698 (27%), Gaps = 148/698 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 D ET S + ++ +F ++ HD Sbjct: 352 DVFAFDTETDSLDYMV----------ANLVGVSFATEEGVAAYVPVAHDYLDAPEQLDRD 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALK 110 + + LK LE+ V N ++ +VL +++ + T++ + Sbjct: 402 WVLEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHD 459 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 AL+ E + ++ Y D VT Sbjct: 460 MDSLALRFLQHS----------CISFEQIAGKGKKQLTFNQIELEQASPYAAEDADVTLR 509 Query: 171 IFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + RL +++ L + I G +D +Q + + +L+ Sbjct: 510 LHNRLLANIEQDEKLKTIYEEVEVPLVPVLSRIERTGVLIDDMKLAAQSQEIALRLDELE 569 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQ 275 Q+ + + ++L+ LF + GL T +T + VL P Sbjct: 570 QQAFEI-AEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPLPKL 628 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R ++ + L + +N + T + TGR S QN+P + Sbjct: 629 ILEYR-GLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNDE 687 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA G K++ D + IE R++A ++G+ Sbjct: 688 GRR-------------------------IRQAFIAPHGYKIMAVDYSQIELRIMAHLSGD 722 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF+ G+D++ T A V QV+ +QR K + L Y A Sbjct: 723 KALLDAFQQGKDIHAATAAEIIGVDIEQVSAEQRRRAKAVNFGLIYGMSA-----FGLAK 777 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + ++ E + + + E + G + R Sbjct: 778 QLGIPRGEAQQYMDTYFERYPGVMQYMEDTRSAAAEQGYVETIFGRRLHLPEIKSRNGMR 837 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R +A G A K+ + + + + + L V + Sbjct: 838 R-----KAAERAAINAPMQGTAADIIKKAMLLVDEWIESQGQGRVKLLM-------QVHD 885 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 + + E+ VQ Sbjct: 886 ELVFEVQESALAE---------IESKVQ-------------------------------- 904 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 LM S +PL AE + Sbjct: 905 -------------ELMESAAQ--LDVPLIAEAGHGDNW 927 >gi|301062352|ref|ZP_07203015.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2] gi|300443556|gb|EFK07658.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2] Length = 893 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 105/712 (14%), Positives = 204/712 (28%), Gaps = 181/712 (25%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 L ID ET + ++ +F + H P Sbjct: 317 LAIDTETTGTDPMR----------ADLVGVSFCLKEGKAFYLPVGHHYLGVPAQVSWPDA 366 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110 VLK+ LE+ V V N ++ VLK + + T++ + L Sbjct: 367 RDVLKDVLEDDAVLKVGQNIKYDACVLKRH-GVSLSGIS-FDTMIASYVINPGLRQHNLD 424 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A+ + ++I+ + + + EY D +T Sbjct: 425 ALAQRY--------LNHKMISY----KDVVGKGKNARGFEEVSLEKACEYSCEDADMTFR 472 Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + + L E +L + + G +D AL T++ E ++++ Sbjct: 473 LRRILAKQIRDEKNEALFNELEMKLLPVLLDMEMTGIKIDTALFETMSADFAEEMKQVEK 532 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQ 275 ++++ + ++L LF L T +T +VL + A + Sbjct: 533 KIQADAGM-EFNLNSPQQLGKVLFEVLKLPGGRKTAKTKRYSTDVKVLQKLAESHRIARE 591 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R ++ L+ LV +N + + T + TGR S QN+P + Sbjct: 592 ILRFR-SLAKLKSTYLDALVRMVNPETKRVHTSFNQTVAATGRLSSSDPNLQNIPIRGDA 650 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + +R +A GK LV AD + IE RV A + + Sbjct: 651 GK-------------------------NIRKGFMAGSGKILVAADYSQIELRVFAHYSQD 685 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AF+ +D++ T +VT + R I K + Sbjct: 686 AAFMAAFKENQDIHARTALEVLGKEKGEVTPEMRRIAKAINF--------------GIIY 731 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + + A + A+ ++ Sbjct: 732 GMGPQKLSEELSI------------------------------SKEAAQDYINAYYDRYK 761 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V +A E +E G R D+ + Sbjct: 762 GVKRFK---EKAIETALEKGYVTTLFN-----------------------RRRYLPDISH 795 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629 N N + R +Q + D++ + M+ ++L VH Sbjct: 796 NN---NRIRSEAERMA------VNTPIQGTAADLIKKAMIEIHNRLTEAAFQSKMLLQVH 846 Query: 630 D--------EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 D + + +M+ M + +PLK + + + Sbjct: 847 DELLLEVPE-------EEADDLINMIREEMEGV--YPLRVPLKVDIGKGLNW 889 >gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15] Length = 959 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 94/701 (13%), Positives = 183/701 (26%), Gaps = 147/701 (20%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 + +D ET S + ++ + + H Sbjct: 371 VCLDTETTSIDPM----------QAQLVGLSLSVEPGQACYIPVAHRGPDVSGLEAAGQL 420 Query: 51 --PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108 + +K LE+ V + ++ V + + T++ + Sbjct: 421 AREAVLARMKPWLEDASRKKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRN 478 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 A ++ K E EY D +T Sbjct: 479 HGMDALAERVLHLKTIT----------YEEVCGKGASQIGFDEVPLDRATEYAAEDADIT 528 Query: 169 REIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + + + P E + Q + G +D + + + Sbjct: 529 LRLHRAMYPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDAERLARQSTGLGQRLLE 588 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273 L+Q+ +L + +++ F + L + T +T + VL + P Sbjct: 589 LEQQAYALAGQP-FNLNSPKQIGEIFFTQLKLPVIKKTASGAPSTDEEVLQKLAEDYPLP 647 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + + R ++ + L + +N T + TGR + QN+P + Sbjct: 648 KLLLDFR-GLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRLASTDPNLQNIPVRT 706 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A G +V AD + IE R++A ++ Sbjct: 707 EEGRR-------------------------IREAFVAPAGSVIVSADYSQIELRIMAHLS 741 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ L+AF G+D++ T A F V P +VT +QR KV+ L Y A Sbjct: 742 EDEGLLRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSA-----FGL 796 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + L + A + + + + + E + G Sbjct: 797 ASNLGIGRDAAKLYIDRYFARYPGVARYMDETRLVAHERGYVETVFGRRLWLP-----DI 851 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + +A G A K + + + R+ V Sbjct: 852 NGGNGPRRQAAERAAINAPMQGTAADLIKLSMLAVQDWLDGSPSTGKPGAPMRTRQVMQV 911 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + +VL Sbjct: 912 HDE-----------------------------------------------LVL------- 917 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P + L LM A +PL AE + Sbjct: 918 -EVPQEELSLVRERLPELMCGVA--ALRVPLVAEVGVGANW 955 >gi|167842181|ref|ZP_02468865.1| DNA polymerase I [Burkholderia thailandensis MSMB43] Length = 926 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 106/699 (15%), Positives = 191/699 (27%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 352 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPLAHRGPDLPAQLPRDEVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 402 AKLTPWLEDASRKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 459 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ + Sbjct: 460 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLDKASEYAAEDADITLQLHRA 509 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + +L+QE Sbjct: 510 LYPQVAREPGLMRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVELEQEAY 569 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F L + T + T + VL + P + + Sbjct: 570 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 628 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N + T + TGR + QN+P + Sbjct: 629 R-GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 686 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA G K+V AD + IE R++A ++ ++ L Sbjct: 687 ------------------------IREAFIAPPGSKIVSADYSQIELRIMAHISEDESLL 722 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 723 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 777 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + ++ + E + G R ++ Sbjct: 778 TRDAAKLYIDRYFLRYPGVAHYMEETRARAKERGYVETVFGR---------RLWLPEING 828 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 829 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 870 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL E Sbjct: 871 -------------RARM--------IMQ-------------VHDE---LVL--------E 885 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 PD + L +M +PL AE + + Sbjct: 886 VPDGELSVVREKLPEMMCGVAK--LKVPLVAEVGVGENW 922 >gi|83594843|ref|YP_428595.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170] gi|83577757|gb|ABC24308.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170] Length = 924 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 99/719 (13%), Positives = 192/719 (26%), Gaps = 175/719 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL------ 57 + ID ET S A ++ + H + L Sbjct: 328 VAIDTETDSLK----------ARRATLVGVSLAITPGRACYIPFAHGLRKAEGLDFDGAA 377 Query: 58 ----------------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101 + L + V V HN F+ VL D+ T+VL+ Sbjct: 378 PPVANIEDKAAALALLGDLLRDPGVLKVGHNLKFDLHVLANAGLSDVAP--VDDTMVLSY 435 Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 G ++ L R E + Y Sbjct: 436 VLD--------GTLHGHGMDELAGLH-LGRRTITFEEVCGKGKGQITFDQVPLDKAVAYA 486 Query: 162 KGDVTVTREIF----------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT ++ + + ++ + + + G VD L+ Sbjct: 487 AEDADVTLRLYLLLRDRLLKEHMVRVHETLDRPMVRILTDMEAAGVRVDALRLKALSGDF 546 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT-----ETTCQRVLSSN 266 L+ ++ +L + ++L LF E L + +T +VL Sbjct: 547 AKRMGDLEDQIHALAGHA-FNVASPKQLGEVLFEEMSLTGGKKSRKTGAWSTDAQVLDQL 605 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + + ++ + LV ++ T L + TGR S Sbjct: 606 AAEGHDLPARVLDWRQYAKLKGTYTDALVAEIDERTGRVHTTYGLTVTATGRLSSNDPNL 665 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P S + + +R IA+ G L+ AD + IE Sbjct: 666 QNIPVRSEAGRK-------------------------IREAFIAAPGHLLISADYSQIEL 700 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A +AG +AF G+D++ T ++ F V + R K + Sbjct: 701 RLVAHVAGITALRQAFAEGKDIHAITASQVFGVPVEGMDPMVRRQAKAINF--------- 751 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ A + Sbjct: 752 -----GIIYGIS------------------------------AHGLAQQLGVGRPEAAAF 776 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 A+ + + + + + P GR Sbjct: 777 ITAYFARFPEIRSYMETVKEEART--------------------------VGWVATPFGR 810 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGY 622 + + + R+ +Q + DI+ M+ +AG Sbjct: 811 RIPIPGIQDKNPA---ARAFAERQAINAP------IQGGAADIIKRAMIALPPALEQAGL 861 Query: 623 --DIVLTVHDEIVC-ETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673 ++L VHDE++ E A+++ +M + + +PL+ + + + Sbjct: 862 ATRMLLQVHDELIFEAPEAEAETAAALVKRVMETAVTLTDDQGERTVPLEVDTGIAASW 920 >gi|317969181|ref|ZP_07970571.1| DNA polymerase I [Synechococcus sp. CB0205] Length = 985 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 108/712 (15%), Positives = 199/712 (27%), Gaps = 162/712 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD----------- 50 + +D ET S ++ + + + H Sbjct: 392 VALDTETTSLNPF----------QAELVGLGVCWGEGLDQLAYIPLGHQAELSDPAQLPL 441 Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP--S 107 + L L + N+ ++R +L +P+ + TL+ Sbjct: 442 DQVLGALAPWLSSAAHPKTLQNAKYDRLILLRH---GLPLAGVVMDTLLADYLRDANAKH 498 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L+ + + ++ L + YC DV V Sbjct: 499 GLELLAQR---------------NFGFLPTSYSELVPKGANFSAVPMAQAALYCGMDVHV 543 Query: 168 TREIFKRLEPLSS------------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 T + L E L + + G +D L++ + Sbjct: 544 TYRLTPLLRGQLEALGEPLTALLDQVELPLEPVLALMEATGIRIDTDYLGELSRELKATL 603 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270 +L+ + + + ++L LF GL + T+ +T VL + Sbjct: 604 ERLESDAKEAAGTD-FNLASPKQLGELLFDTLGLDRKKSRKTKTGWSTDATVLEKLEDAH 662 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P V +R S+ ++ L M GR+ + TGR S QN+ Sbjct: 663 PVVPLVLEHR-TLSKLKSTYVDALPALMEAETGRVHTDFNQAV-TATGRLSSSNPNLQNI 720 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P + S +R + G L+ AD + IE R+L Sbjct: 721 PVRTE-------------------------FSRRIRKAFLPEAGWTLISADYSQIELRIL 755 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++GE+ +KA+++G+D++ T F +VT D+R +GK + + Y G Q Sbjct: 756 AHLSGEEVLVKAYQSGDDVHALTARLLF--DKDEVTSDERRLGKTINFGVIYGMGV---Q 810 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 + A TG++ + + + F + + +G Sbjct: 811 RFARETGVS--QAEAKEFLSKYKQRYPKVFAFLELQERLALSRGYVETILGRRRPFAFD- 867 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + K+ L + L R Sbjct: 868 ------------------------------------PSGLGRHLGKDPLEIELEVARR-- 889 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623 Q R +Q S DI+ M+ + Sbjct: 890 -----------GGMEAQQLRAAANAP------IQGSSADIIKLAMVQLQQRLTESALPAR 932 Query: 624 IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE+V E L M + +PL E + Sbjct: 933 LLLQVHDELVLEAAPEALETVLNLTRETMERAVT--LSVPLVVETGVGPNWM 982 >gi|148826499|ref|YP_001291252.1| DNA polymerase I [Haemophilus influenzae PittEE] gi|148716659|gb|ABQ98869.1| DNA polymerase I [Haemophilus influenzae PittEE] Length = 930 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 100/700 (14%), Positives = 199/700 (28%), Gaps = 155/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51 + +D ET S ++ ++ +F ++ + Sbjct: 354 KLIAVDTETDSLDYIS----------ANLVGISFALENGEATYLPLQLDYLDAPKTLEKS 403 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 +K LEN ++ + N F+ ++ +++ T++L+ + + Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 461 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G E IA E+ ++ EY D VT Sbjct: 462 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLEQATEYAAEDADVTM 509 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L E L ++ + G +D + + T L Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTAL 569 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 +++ +L + ++L+ LF + GL +T + VL Sbjct: 570 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 627 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ S+ + L + +NS T + TGR S QN+P + Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA EG +V AD + IE R++A ++G Sbjct: 688 EGRR-------------------------IRQAFIAHEGYSIVAADYSQIELRIMAHLSG 722 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF G+D++ +T A F V+ +VT +QR K + L Y A + Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSA-----FGLS 777 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L ++ + + + + F ++ + G Sbjct: 778 RQLGISRLDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAM 837 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R + G A KR + + + D+ Sbjct: 838 RR-----KGAERVAINAPMQGTAADIIKRAMIKIDEVI---------------RHDPDI- 876 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 E I+Q +V Sbjct: 877 ------------------------EMIMQ-------------VHDE-----------LVF 888 Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + F + M + +PL E + + Sbjct: 889 EVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 926 >gi|259906706|ref|YP_002647062.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96] gi|224962328|emb|CAX53783.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96] gi|283476488|emb|CAY72303.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163] Length = 929 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 110/701 (15%), Positives = 204/701 (29%), Gaps = 160/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S L+ +I +F HD + Sbjct: 353 AFDLETDSLDTLS----------ANIIGLSFATAPGEAAYLPVAHDYLDAPEQLDRSDVL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ V N F+R VLK ++++ R T++ + + + Sbjct: 403 ARLKPLLEDPQAQKVGQNLKFDRGVLKRY-DIELQGIR-FDTMLESYALNSVAGRHDMDT 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L + E ++ A Y D VT ++ Sbjct: 461 LASR------------WLNHKTVTFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P KEQ L + I G +D + T +Q + +L+ Sbjct: 509 HVKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDPGILATHSQELGSRLAELEL 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+T LF + G+ T +T + VL+ P + Sbjct: 569 KAHELAG-EPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEHR-GLAKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA +G ++V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPQGHRIVAADYSQIELRIMAHLSQDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF + +D++ T A F V+ +V+ +QR K + L Y A + Sbjct: 722 GLLSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSA-----FGLSRQ 776 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 LN+ + E + + +E + G R Sbjct: 777 LNIGAGEAKKYMDLYFERYPGVLQYMESTRELAAQKGYVSTLDGR---------RLYLPD 827 Query: 517 VSE----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + +A G A KR + + + + + + + Sbjct: 828 IKASNAMRRKAAERAAINAPMQGTAADIIKRAMIAVDRWLEQQPSPEVKM---------- 877 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 I+Q +V VH Sbjct: 878 ----------------------------IMQ-------------VHDE---LVFEVH--- 890 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 D E + + LM + +PL+ + + Sbjct: 891 ----ADAVEAACAQIRALMEGSMK--LDVPLRVDIGVGDNW 925 >gi|148828039|ref|YP_001292792.1| DNA polymerase I [Haemophilus influenzae PittGG] gi|148719281|gb|ABR00409.1| DNA polymerase I [Haemophilus influenzae PittGG] Length = 930 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 100/700 (14%), Positives = 199/700 (28%), Gaps = 155/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51 + +D ET S ++ ++ +F ++ + Sbjct: 354 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 +K LEN ++ + N F+ ++ +++ T++L+ + + Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 461 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G E IA E+ ++ EY D VT Sbjct: 462 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLEQATEYAAEDADVTM 509 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L E L ++ + G +D + + T L Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTAL 569 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 +++ +L + ++L+ LF + GL +T + VL Sbjct: 570 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 627 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ S+ + L + +NS T + TGR S QN+P + Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA +G +V AD + IE R++A ++G Sbjct: 688 EGRR-------------------------IRQAFIARKGYSIVAADYSQIELRIMAHLSG 722 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF G+D++ +T A F V+ +VT +QR K + L Y A + Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSA-----FGLS 777 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L ++ N + + + F ++ + G Sbjct: 778 RQLGISRADAQKYMNLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAM 837 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R + G A KR + + + D+ Sbjct: 838 RR-----KGAERVAINAPMQGTAADIIKRAMIKIDEVI---------------RHDPDI- 876 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 E I+Q +V Sbjct: 877 ------------------------EMIMQ-------------VHDE-----------LVF 888 Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + F + M + +PL E + + Sbjct: 889 EVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 926 >gi|153948148|ref|YP_001399022.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758] gi|152959643|gb|ABS47104.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758] Length = 932 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 104/699 (14%), Positives = 198/699 (28%), Gaps = 156/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET L+ +I +F HD + Sbjct: 356 AFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVL 405 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ V N F++++L +D+ T++ + + + Sbjct: 406 ATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIA-FDTMLESYVLDSVAGRHDMDS 463 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + I G +D + ++ + + +L++ Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 571 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 572 QAHEL-AEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + + TGR S QN+P + Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA +G ++ AD + IE R++A ++ + Sbjct: 689 GRR-------------------------IRQAFIAPKGYCIMAADYSQIELRIMAHLSQD 723 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF G+D++ T A F +VT +QR K + L Y A Sbjct: 724 NGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSA-----FGLAR 778 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + + E + + ++ E G R + Sbjct: 779 QLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANR 838 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + G A KR + + + + ++ + Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRV------------- 880 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 I+Q +V VH Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH------ 893 Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ +A + LM + A +PLK + + Sbjct: 894 --ESVLQSAEQKIRELMEQSMQLA--VPLKVDVGVGANW 928 >gi|167923694|ref|ZP_02510785.1| DNA polymerase I [Burkholderia pseudomallei BCC215] Length = 923 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 104/699 (14%), Positives = 187/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L L + + + ++ VL + + TL+ + Sbjct: 399 AKLTPWLGDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 506 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + L+QE Sbjct: 507 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTLEQEAY 566 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F L + T + T + VL + P + + Sbjct: 567 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N D T + TGR + QN+P + Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 683 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A G K+V AD + IE R++A ++ ++ L Sbjct: 684 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 719 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 825 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 867 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL E Sbjct: 868 -------------RARM--------IMQ-------------VHDE---LVL--------E 882 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973] gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973] Length = 920 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 100/692 (14%), Positives = 194/692 (28%), Gaps = 145/692 (20%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLK 58 T+ ID ET S YA D ++ +F ++ D + + K Sbjct: 349 TVSIDTETTSL----------YAMDAELVGLSFAVEERQAFYVPVPADRKEAEKIVNIFK 398 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 E+ + V N ++ VL+ + + T++ L+ Sbjct: 399 PLYESEAIMKVGQNMKYDLEVLRNY-GVCLR-GALFDTMIAHYLIQP---------ELRH 447 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 + M E K + EY D +T ++ LEP Sbjct: 448 NMDYMAEVYLNYQTIHIDTLIGAKGKHQKSMRELSPAQVYEYAAEDADITLQLKNVLEPK 507 Query: 179 S----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E L + + G +D + I+ L+ + L G Sbjct: 508 LREVEAEELFYQIEMPLVPVLAEMEMNGVRIDTQSLKETSDILTRRMHDLEARIYELAGG 567 Query: 229 LVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + +++ LF + T+T T + VL + + + R Sbjct: 568 -EFNIASPKQVGDMLFGRMKIIDKPKKTKTGQYVTSEEVLQQLRGKHEIVGDILDYR-GL 625 Query: 284 SRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + ++ L + +N+ GR+ + + TGR S QN+P +E Sbjct: 626 KKLLGTYVDALPKLINTRTGRIHTSFNQ-TVTATGRLSSSEPNLQNIPVRGEDGKE---- 680 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R I EG AD + IE RV+A ++G+ ++AF Sbjct: 681 ---------------------IRKAFIPEEGCLFFSADYSQIELRVMAHLSGDAHMIEAF 719 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ T A+ + A VT+D+R K + Y L+++ Sbjct: 720 REGYDIHAATAAKIYGRAVEDVTRDERTKAKRANFGIIYGITV-----FGLAERLDIDRN 774 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + + +++ +E H + Sbjct: 775 EAKQLIDGYFMMFPQVKDYMEHSKEVARTHGYVETIF----------------------- 811 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 +RR +P + + + Sbjct: 812 ------------------HRRRYLPDINSHNATVRGFAERNA--------INAPIQGSAA 845 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 ++ Y + E I ++L VHDE+ ++ Sbjct: 846 DIIKVAMIRIYRRFMKEGI-------------------RSKMILQVHDELNFSVFPEEKE 886 Query: 643 NASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + M + +PL A+ + Sbjct: 887 RVERIVMEEMQQA--YPLRVPLVADSGWGTNW 916 >gi|271502639|ref|YP_003335665.1| DNA polymerase I [Dickeya dadantii Ech586] gi|270346194|gb|ACZ78959.1| DNA polymerase I [Dickeya dadantii Ech586] Length = 929 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 196/701 (27%), Gaps = 161/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET LT ++ + HD + Sbjct: 354 SFDTETDGLDTLT----------ANLVGISLAIKPGEAAYLPLGHDYLDAPTQLDRDTVL 403 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LEN + + N F++ V+ +D+ T++ + + + Sbjct: 404 AQLKPLLENEAIGKIGQNLKFDKGVMARY-GIDLRGI-VFDTMLESYVLDSVAGRHDMDS 461 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ Y D VT + Sbjct: 462 LSERY------------LQHKTITFEEIAGKGKNQLTFNQIPLEQAAVYAAEDADVTLRL 509 Query: 172 FKRLEPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L +QEL + + G +D + +Q + +L+ Sbjct: 510 HETLWAKLEPQQELCQVFKNIDMPLVPVLSRMERTGVLIDTTILAEHSQELTQRLAELEV 569 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 L + ++L L+ + L + T +T + VL+ P + Sbjct: 570 RAHELAG-EAFNLASPKQLGAILYEKLQLPVIKKTPKGAPSTNEEVLAELALDHPLPKLI 628 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R ++ + L + +N + T + TGR S QN+P + Sbjct: 629 LEHR-ELAKLKSTYTDKLPQMINPLTKRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEG 687 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA +G +++ AD + IE R++A ++ + Sbjct: 688 RR-------------------------IRQAFIAPQGYQILAADYSQIELRIMAHLSRDA 722 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 LKAF G D++ T A F + +VT +QR K + L Y A + Sbjct: 723 GLLKAFSDGLDIHRATAAEVFGLPLDKVTTEQRRSAKAINFGLIYGMSA-----FGLSRQ 777 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L + N E + + + ++ + G R SR Sbjct: 778 LGIARNEAQKYMNLYFERYPGVQEYMERTRQQAADQGYVSTLDGRRLYLPDIHSRNAMSR 837 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 +A G A K+ + + + + L ML Sbjct: 838 -----KAAERAAINAPMQGTAADIIKKAMIAIDDWLQQEKPLATML-------------- 878 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH----DEI 632 +Q +V VH DE+ Sbjct: 879 -------------------------MQ-------------VHDE---LVFEVHHSVLDEV 897 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + +LM +PL+ + + Sbjct: 898 -----------SAKIRNLMEGCMQ--LDVPLQVDIGTGSNW 925 >gi|238759874|ref|ZP_04621030.1| DNA polymerase I [Yersinia aldovae ATCC 35236] gi|238701935|gb|EEP94496.1| DNA polymerase I [Yersinia aldovae ATCC 35236] Length = 932 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 107/698 (15%), Positives = 202/698 (28%), Gaps = 154/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET L+ +I +F HD + Sbjct: 356 AFDTETDGLDTLSSN----------LIGMSFAVAPGEAAYLPLAHDYLDAPAQLDRNWVL 405 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LEN V N F++++L +++ T++ + + + Sbjct: 406 ATLKPLLENEKALKVGQNLKFDQSMLARY-GIELRGIA-FDTMLESYVLDSVAGRHDMDS 463 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + I G +D + ++ + + +L++ Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 571 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 572 QAHEL-AEEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + + TGR S QN+P + Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA +G +++ AD + IE R++A ++ + Sbjct: 689 GRR-------------------------IRQAFIAPKGYRIMAADYSQIELRIMAHLSQD 723 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF G+D++ T A F + VT +QR K + L Y A Sbjct: 724 KGLLAAFAAGKDIHRATAAEVFGMPLESVTNEQRRSAKAINFGLIYGMSA-----FGLAR 778 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 LN+ + E + + ++ E G R + Sbjct: 779 QLNIPRGEAQRYMDLYFERYPGGLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANR 838 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + G A KR + + + + ++ + Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRV------------- 880 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 I+Q +V VH E V E Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH-ESVLE 898 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + + LM + A +PLK + + Sbjct: 899 SAE------QKIRDLMEQSMQLA--VPLKVDVGVGYNW 928 >gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM 10] gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua] gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516] gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125] gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016] gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275] gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001] gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004] gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92] gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195] gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516] gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27] gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003] gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM 10] gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516] gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua] gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92] gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125] gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275] gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016] gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001] gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004] gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516] gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195] gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004] gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27] gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003] gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 932 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 104/699 (14%), Positives = 198/699 (28%), Gaps = 156/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET L+ +I +F HD + Sbjct: 356 AFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVL 405 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ V N F++++L +D+ T++ + + + Sbjct: 406 ATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIA-FDTMLESYVLDSVAGRHDMDS 463 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + I G +D + ++ + + +L++ Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 571 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 572 QAHEL-AEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + + TGR S QN+P + Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA +G ++ AD + IE R++A ++ + Sbjct: 689 GRR-------------------------IRQAFIAPKGYCIMAADYSQIELRIMAHLSQD 723 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF G+D++ T A F +VT +QR K + L Y A Sbjct: 724 NGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSA-----FGLAR 778 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + + E + + ++ E G R + Sbjct: 779 QLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANR 838 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + G A KR + + + + ++ + Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRV------------- 880 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 I+Q +V VH Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH------ 893 Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ +A + LM + A +PLK + + Sbjct: 894 --ESVLQSAEQKIRELMEQSMQLA--VPLKVDVGVGANW 928 >gi|212637750|ref|YP_002314275.1| DNA polymerase A [Shewanella piezotolerans WP3] gi|212559234|gb|ACJ31688.1| DNA polymerase A [Shewanella piezotolerans WP3] Length = 916 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 105/701 (14%), Positives = 205/701 (29%), Gaps = 154/701 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMP-- 54 + ID ET S Y E ++ +F + HD + Sbjct: 337 DLIAIDTETTSLN---------YME-AELVGISFAVEAGKAAYLPLSHDYVDAPEQLDKA 386 Query: 55 ---QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + L LEN + V N ++ ++ + + + T++ + Sbjct: 387 LVFEKLTPLLENEAIKKVGQNLKYDISIFANA-GIKLKGVQ-FDTMLESYVFNSVASKHN 444 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + + G + I+ E + ++ Y D +T Sbjct: 445 MDDLALKY--------LGHKNISF----EEIAGKGAKQLTFNQIPLETAAPYAAEDADIT 492 Query: 169 REIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + + L P E L + TI +G +D L ++ + + Sbjct: 493 LRLHQHLWPRLEKLPQLASVFTDIELPLIDILSTIERQGVLIDSMLLGQQSEELARKIDD 552 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L + + + ++L+ F + G + T +T + VL P Sbjct: 553 LQTKAHEIAGQP-FNLASPKQLQELFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPLP 611 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + +R ++ + L +N GR+ + A+ TGR S QN+P Sbjct: 612 KIILEHR-SLAKLKSTYTDKLPLMVNAKSGRVHTSYHQANAA-TGRLSSSEPNLQNIPIR 669 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +R IA EG+K++ AD + IE R++A + Sbjct: 670 TEEGRR-------------------------IRHAFIAPEGRKILAADYSQIELRIMAHL 704 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F+V ++VT DQR K + L Y A Sbjct: 705 SQDKGLLTAFAEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMSA-----FG 759 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 L++ ++ + + N+ + + G R Sbjct: 760 LAKQLDIPRAEAQRYIDTYFKRYPGVLNYMEETRAIATDLGYVSTLFGRRLYLPAIKDRN 819 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 R +A G A K+ + + + + N + + Sbjct: 820 AMRR-----QAAERAAINAPMQGTAADIIKKAMINVAKWIETETNGEITMIM-------Q 867 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 V + + ++A KA L V Sbjct: 868 VHDELVFE----------------------------------VDADKADS---LQV---- 886 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + LM + + + L AE + Sbjct: 887 -------------KICELMAAAAT--LDVELLAEAGIGDNW 912 >gi|167764029|ref|ZP_02436156.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC 43183] gi|167698145|gb|EDS14724.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC 43183] Length = 952 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 101/694 (14%), Positives = 201/694 (28%), Gaps = 148/694 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58 L ID ET + + ++ +F ++ + + + Sbjct: 380 ILSIDTETTGTEPM----------EAELVGMSFSDAENQAYYVPVPANRDEALKIVNEFR 429 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 EN + V N ++ VL+ + + + T++ + + E Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVK-GKLFDTMLAHYVLQPELRHNMDYLAEIY 487 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + ELI K Y D VT ++ LE Sbjct: 488 LH--YQTIHIDELIG---------AKGKNQKNMRDLPPEDVYRYACEDADVTLKLKNVLE 536 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + I G +D ++ + ++++E+ +L Sbjct: 537 KELKEHAAEHLFYEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYALA 596 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ LF + T+T T + VL S + ++ R Sbjct: 597 GGETFNIGSPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILEYR- 655 Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N GR+ + + TGR S QN+P +E Sbjct: 656 GLKKLLSTYIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIPIRDEDGKE-- 712 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I +G + AD + IE R++A ++ ++ + Sbjct: 713 -----------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKNMID 749 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +G D++ T A+ + V VT D R K + Y +N+ Sbjct: 750 AFLSGYDIHAATAAKIYKVDINDVTADMRRKAKTANFGIIYGISV-----FGLAERMNVP 804 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + E + + + + E+ + +R +++ V Sbjct: 805 RQEAKELIDGYFETYPQVKEYMDRSIQVARENGYVETIFHR--KRFLPDINSRNAVVRGY 862 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + G A K SL+Y+ + +N Sbjct: 863 ---AERNAINAPIQGSAADIIKV---------------------AMSLIYQRLQSNN--- 895 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 L M+ L VHDE+ P+ + Sbjct: 896 -----------------------------LKAKMI----------LQVHDELNFSVPEAE 916 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PLKA+ K + Sbjct: 917 KEIIQKIVIEEMERA--YRMLVPLKADFGWGKNW 948 >gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1] gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1] gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846] Length = 930 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 100/700 (14%), Positives = 199/700 (28%), Gaps = 155/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51 + +D ET S ++ ++ +F ++ + Sbjct: 354 KLIAVDTETDSLDYIS----------ANLVGISFALENGEATYLPLQLDYLDAPKTLEKS 403 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 +K LEN ++ + N F+ ++ +++ T++L+ + + Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 461 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G E IA E+ ++ EY D VT Sbjct: 462 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLEQATEYAAEDADVTM 509 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L E L ++ + G +D + + T L Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTAL 569 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 +++ +L + ++L+ LF + GL +T + VL Sbjct: 570 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 627 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ S+ + L + +NS T + TGR S QN+P + Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA EG +V AD + IE R++A ++G Sbjct: 688 EGRR-------------------------IRQAFIAHEGYSIVAADYSQIELRIMAHLSG 722 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF G+D++ +T A F V+ +VT +QR K + L Y A + Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSA-----FGLS 777 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L ++ + + + + F ++ + G Sbjct: 778 RQLGISRPDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAM 837 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R + G A KR + + + D+ Sbjct: 838 RR-----KGAERVAINAPMQGTAADIIKRAMIKIDEVI---------------RHDPDI- 876 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 E I+Q +V Sbjct: 877 ------------------------EMIMQ-------------VHDE-----------LVF 888 Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + F + M + +PL E + + Sbjct: 889 EVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 926 >gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574] gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574] Length = 920 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 97/695 (13%), Positives = 199/695 (28%), Gaps = 149/695 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPV---MPQVL 57 L +D ET S + + ++ +F ++ + + + Sbjct: 348 KILSLDTETTSTNAI----------EAELVGLSFAVEERKAFYVAIPANREEALKIVAIF 397 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K E+ ++ V N ++ VL + +++ T++ + + E Sbjct: 398 KPLYEDPEILKVGQNIKYDIEVL-RHYGVEVA-GPMFDTMIAHYLLQPELRHNMDYMAEV 455 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + +ELI R+ EY D +T + L Sbjct: 456 Y--LGYRTVHIEELI----GPRGRNQKNMRDLSPTDI-----YEYACEDADITLRLKNVL 504 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 EP E L + + G C+D H +++ + T ++Q + L Sbjct: 505 EPKLDEAGVARLFHDIEMPLVGVLADMELNGVCLDTEALHETSEVFNKRMTTIEQHIYEL 564 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + ++ LF + + T+T T + VL + +P ++ N R Sbjct: 565 AG-EQFNISSPRQVGDILFGKMKIVDKPKKTKTGQFVTSEEVLQQLRSKSPIIDEILNYR 623 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L + +N GR+ + + TGR S QN+P +E Sbjct: 624 -GLKKLLSTYVDALPKLINPRTGRIHTSFNQ-TVTATGRLSSSDPNLQNIPVRDDDGKE- 680 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R C I G AD + IE R++A ++ ++ + Sbjct: 681 ------------------------IRKCFIPEPGCLFFSADYSQIELRIMAHLSEDENMI 716 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G D++ T AR ++ +VT +R K + Y +++ Sbjct: 717 EAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIYG-----ITTYGLAQRMDI 771 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + E + +E + + R ++ V Sbjct: 772 SNGEARDLIDGYFLTFPRVEAYMEQAKETARKQGYAETLFHR--RRYLPDINSHNATVRG 829 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G K V + R + + Sbjct: 830 F---AERNAINAPIQGSEADIIKVAMVRIH----------------RRFKAEGIRSK--- 867 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 M+ L VHDE+ Sbjct: 868 ----------------------------------MI----------LQVHDELNFSVFPE 883 Query: 640 DEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + M + +PL A+ K + Sbjct: 884 EKEQVERIVVEEMQGA--YKLRVPLVADAGWGKNW 916 >gi|45439883|ref|NP_991422.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001] gi|145601126|ref|YP_001165202.1| DNA polymerase I [Yersinia pestis Pestoides F] gi|162418335|ref|YP_001604664.1| DNA polymerase I [Yersinia pestis Angola] gi|170026402|ref|YP_001722907.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII] gi|229836126|ref|ZP_04456294.1| DNA polymerase I [Yersinia pestis Pestoides A] gi|45434738|gb|AAS60299.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001] gi|145212822|gb|ABP42229.1| DNA polymerase I [Yersinia pestis Pestoides F] gi|162351150|gb|ABX85098.1| DNA polymerase I [Yersinia pestis Angola] gi|169752936|gb|ACA70454.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII] gi|229706574|gb|EEO92580.1| DNA polymerase I [Yersinia pestis Pestoides A] Length = 932 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 104/699 (14%), Positives = 198/699 (28%), Gaps = 156/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET L+ +I +F HD + Sbjct: 356 AFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVL 405 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ V N F++++L +D+ T++ + + + Sbjct: 406 ATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIA-FDTMLESYVLDSVAGRHDMDS 463 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + I G +D + ++ + + +L++ Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 571 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 572 QAHEL-AEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + + TGR S QN+P + Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA +G ++ AD + IE R++A ++ + Sbjct: 689 GRR-------------------------IRQAFIAPKGYCIMAADYSQIELRIMAHLSQD 723 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF G+D++ T A F +VT +QR K + L Y A Sbjct: 724 NGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSA-----FGLAR 778 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + + E + + ++ E G R + Sbjct: 779 QLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANR 838 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + G A KR + + + + ++ + Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRV------------- 880 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 I+Q +V VH Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH------ 893 Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ +A + LM + A +PLK + + Sbjct: 894 --ESVLQSAEQKIRELMEQSMQLA--VPLKVDVGVGANW 928 >gi|189464890|ref|ZP_03013675.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM 17393] gi|189437164|gb|EDV06149.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM 17393] Length = 941 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 97/697 (13%), Positives = 196/697 (28%), Gaps = 149/697 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 L ID ET S + + ++ +F ++ + + Sbjct: 369 KILSIDTETTSAEPM----------EAELVGMSFSDTENQAYYVPVPPEREEALKIVNEF 418 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 + EN + V N ++ VL+ +++ T++ + + E Sbjct: 419 RPLYENENSMKVGQNIKYDILVLQNY-GVEVK-GELFDTMLAHYVLQPELRHNMDYLAEI 476 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + ELI K +Y D +T ++ L Sbjct: 477 YLH--YQTIHIDELIG---------PKGKNQKNMRDLPPEEVYKYACEDADITLKLKNVL 525 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E E L + + G +D ++ V ++++E+ L Sbjct: 526 EEELKKQGVEHLFYEIEMPLVRVLANMESNGVRIDTETLKQTSEHFTVRLQEIEKEIYEL 585 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL S + ++ R Sbjct: 586 AG-ETFNIASPKQVGEILFDKLKIIDKAKKTKTGQYVTSEEVLESLRNKHEVIGKILEYR 644 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L +N GR+ + + TGR S QN+P +E Sbjct: 645 -GLKKLLGTYVDALPLLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIPIRDEDGKE- 701 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I + + AD + IE R++A ++ ++ + Sbjct: 702 ------------------------IRKAFIPDDDCEFFSADYSQIELRIMAHLSEDKNMI 737 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF +G D++ T A+ + + VT D R K + Y +N+ Sbjct: 738 DAFLSGYDIHAATAAKIYKIDIKDVTPDMRRKAKTANFGIIYGISI-----FGLAERMNV 792 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + E + + + E + +R +++ V Sbjct: 793 DRKEAKELIDGYFETYPQVREYMDKSIQVAREQGYVETIFHR--KRFLPDINSRNATVRG 850 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G A K Sbjct: 851 Y---AERNAINAPIQGSAADIIKV------------------------------------ 871 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 R R +Y K M+ L VHDE+ P+ Sbjct: 872 --AMARIYERFQSYKLKAK---------------MI----------LQVHDELNFSVPEA 904 Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++ + M + +PL+A+ K + K Sbjct: 905 EKEFVQQIVIEEMERA--YRMHVPLRADCGWGKNWLK 939 >gi|9858145|gb|AAG01015.1|AF288383_1 DNA polymerase I [Burkholderia pseudomallei] Length = 615 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 104/699 (14%), Positives = 187/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 41 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 90 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 91 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 148 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 149 ALRHLGVKTI----------KYEDVAGQGAQQIGFDEVPLAQAFEYAAEDADITLQLHHA 198 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + L+QE Sbjct: 199 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 258 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F L + T + T + VL + P + + Sbjct: 259 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 317 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N D T + TGR + QN+P + Sbjct: 318 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 375 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A G K+V AD + IE R++ ++ ++ L Sbjct: 376 ------------------------IREAFVAPPGSKIVSADYSQIELRIMLHISEDESLL 411 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 412 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 466 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 467 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 517 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 518 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 559 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL E Sbjct: 560 -------------RARM--------IMQ-------------VHDE---LVL--------E 574 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 575 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 611 >gi|33863427|ref|NP_894987.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313] gi|33640876|emb|CAE21332.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313] Length = 986 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 112/716 (15%), Positives = 207/716 (28%), Gaps = 161/716 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD--------- 50 + ID ET + ++ + + + H Sbjct: 386 KPVAIDTETTALNPFC----------AELVGLGVCWGEGLQDLAYIPIGHHPPAALLDAD 435 Query: 51 -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 + + + L + D N+ ++R +L L + + TL+ Sbjct: 436 AACQLPLEAVLKAIAPWLASNDHPKALQNAKYDRLILLRH-GLALE-GVVMDTLLADY-- 491 Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 L+ L E K L + + A YC Sbjct: 492 -----LRDAAAKHGLEVMAEREFK------ITPTGFSELVGKGQTFADVAIPTASLYCGM 540 Query: 164 DVTVTREIFKRLEPLSSKE------------QELWYLDQTINDRGYCVDVALAHTLNQIV 211 DV +TR + RL Q L + + G +D+ L+ + Sbjct: 541 DVHLTRRLAIRLRAQLENMGAQLLPLLEQVEQPLEPVLALMEATGIRIDLPYLKELSIEL 600 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTETTCQRVLSSN 266 KL+Q+ + + ++L LF GL+ + +T VL Sbjct: 601 GNTLEKLEQQAQEAAGV-NFNLASPKQLGELLFETLGLNRKKSRRTKTGWSTDANVLEKL 659 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFP 325 + P V +R+ S+ ++ L + + + GR+ + TGR S Sbjct: 660 EADHPVVPLVLEHRV-LSKLRSTYVDALPQLVESETGRVHTDFNQAV-TATGRLSSSNPN 717 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P + S +R + E KL+ AD + IE Sbjct: 718 LQNIPIRTE-------------------------FSRRIRKAFLPQENWKLLSADYSQIE 752 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+L ++GE+ +AF G+D++ T + +V++D+R +GK + + Y GA Sbjct: 753 LRILTHLSGEEVLQEAFRNGDDVHALTARLL--LDKDEVSEDERRLGKTINFGVIYGMGA 810 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + F + L+ + + + F + + +G Sbjct: 811 QRFSR-----STGLSQAEAKDFLSRYKQRYAKVFTFLELQERLALSKGYVETLLG----- 860 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 R P + + L+ P Sbjct: 861 --------------------------------------RRRPFHFDRNGLGRLLGKDPM- 881 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------K 619 D+ + + Q R +Q S DI+ M+ Sbjct: 882 ------DIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQQQLTAAD 929 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE+V E T + L M +PL E + Sbjct: 930 LPARLLLQVHDELVLEVDPTALEDVQQLVMQTMEKAVE--LSVPLVVETGTGDNWM 983 >gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17] gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17] Length = 920 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 97/695 (13%), Positives = 199/695 (28%), Gaps = 149/695 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPV---MPQVL 57 L +D ET S + + ++ +F ++ + + + Sbjct: 348 KILSLDTETTSTNAI----------EAELVGLSFAVEERKAFYVVIPANREEALKIVAIF 397 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K E+ ++ V N ++ VL + +++ T++ + + E Sbjct: 398 KPLYEDPEILKVGQNIKYDIEVL-RHYGVEVA-GPMFDTMIAHYLLQPELRHNMDYMAEV 455 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + +ELI R+ EY D +T + L Sbjct: 456 Y--LGYRTVHIEELI----GPRGRNQKNMRDLSPTDI-----YEYACEDADITLRLKNVL 504 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 EP E L + + G C+D H +++ + T ++Q + L Sbjct: 505 EPKLDEAGVARLFRDIEMPLVGVLADMELNGVCLDTEALHETSEVFNKRMTAIEQHIYEL 564 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + ++ LF + + T+T T + VL + +P ++ N R Sbjct: 565 AG-EQFNISSPRQVGDILFGKMKIVDKPKKTKTGQFVTSEEVLQQLRSKSPIIDEILNYR 623 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L + +N GR+ + + TGR S QN+P +E Sbjct: 624 -GLKKLLSTYVDALPKLINPRTGRIHTSFNQ-TVTATGRLSSSDPNLQNIPVRDDDGKE- 680 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R C I G AD + IE R++A ++ ++ + Sbjct: 681 ------------------------IRKCFIPEPGCLFFSADYSQIELRIMAHLSEDENMI 716 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G D++ T AR ++ +VT +R K + Y +++ Sbjct: 717 EAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIYG-----ITTYGLAQRMDI 771 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + E + +E + + R ++ V Sbjct: 772 SNGEARDLIDGYFLTFPRVEAYMEQAKETARKQGYAETLFHR--RRYLPDINSHNATVRG 829 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G K V + R + + Sbjct: 830 F---AERNAINAPIQGSEADIIKVAMVRIH----------------RRFKAEGIRSK--- 867 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 M+ L VHDE+ Sbjct: 868 ----------------------------------MI----------LQVHDELNFSVFPE 883 Query: 640 DEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + M + +PL A+ K + Sbjct: 884 EKEQVERIVVEEMQGA--YKLRVPLVADAGWGKNW 916 >gi|325474189|gb|EGC77377.1| DNA polymerase I [Treponema denticola F0402] Length = 944 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 111/707 (15%), Positives = 210/707 (29%), Gaps = 172/707 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQ--VL 57 D ET S L + V F+ + + P+ Sbjct: 370 AYDCETTSEDPL----------NAEVCGFSLALKEGEAYYFPLKAPCPELGEEAPKLIAF 419 Query: 58 KEA------LENTDVTIVAHNSYFERTV-LKACFNLDIPIHRWICTLVLARSNGL---PS 107 K+A L ++ +T++ HN F+ L + I T++ A Sbjct: 420 KDAQRAVTKLFDSKMTLIMHNGKFDIQAALSSKLASGIS-ANLFDTMIAAWLLDPARSSY 478 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 + + E+ + K K+L+ + Y D + Sbjct: 479 GMDKLAES--ILGVKTIRFKDLVKTG-------------QNFSDIPLNEACPYAAEDADI 523 Query: 168 TREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 T +K+ PL K + L + +G + ++ + E Sbjct: 524 TFRFYKKFLPLLKKNNLEKLFFDLEMPITKLLTEMEIKGIFLKGEELTAYSKELGKELED 583 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI 274 ++++ L + ++L+ LF E L T+ +T VL + P Sbjct: 584 CEKDIYRLVGH-EFNIASPKQLQEVLFEERKLTPGKKTKTGYSTDTSVLENLASEDPVPA 642 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ + R ++ +TL + + +GR+ + G + TGR S QN+P Sbjct: 643 KILDYR-ALAKLKSTYTDTLPKMTDKNGRIHTSFIQTG-TATGRLSSRDPNLQNIPIRGN 700 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 + +R A +G+ L+ AD + IE +LA ++ Sbjct: 701 EGRK-------------------------IREAFQAEKGRVLISADYSQIELVILAHLSK 735 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q ++AF G D++ T + F V V++D R I K + Sbjct: 736 DQNLVEAFNKGIDVHAKTASLIFAVDIKDVSQDMRRIAKTIN--------------FGVM 781 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ A + KA+ + Sbjct: 782 YGMS------------------------------AFRLASSLRIPRKRADEFIKAYFATY 811 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 S VS ++ Q EQ + GR + Sbjct: 812 SGVSGFMAQVCQEAEQ--------------------------RGYVETLMGRRRYLPAIN 845 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 + R +Q + DI+ M+ KA I+L V Sbjct: 846 SKNKVEK---AGAERIA------VNTPIQGTAADIVKLAMLEVDKALKKQKLDASILLQV 896 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 HDE++ E +++ E S++ M +PL+ + Sbjct: 897 HDELIIEAAESEREKVMSLVKEKMEGVIK--LSVPLRVSIESGMSWG 941 >gi|222147240|ref|YP_002548197.1| DNA polymerase I [Agrobacterium vitis S4] gi|221734230|gb|ACM35193.1| DNA polymerase I [Agrobacterium vitis S4] Length = 992 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 100/718 (13%), Positives = 194/718 (27%), Gaps = 169/718 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---------PVELWDCVHD---- 50 + D ET S + ++ + D+ H Sbjct: 392 VAFDTETTSLDPM----------QADLVGVSLALQDNAASPGAATIRAAYVPLGHKTGRD 441 Query: 51 ----------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94 LK LE+ V VA N ++ V+K I I + Sbjct: 442 DLFSDGLKLAENQIPMDAALTALKGLLEDASVLKVAQNLKYDYLVMKRH---GIVIRGFD 498 Query: 95 CTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 T++L+ + ++ E G I + Sbjct: 499 DTMLLSYVLEAGVGAHGMDSLSERW--------LGHTPIPY----KEVAGSGKSLVTFDL 546 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDV 201 Y D VT ++ L+P E+ L + + +RG +D Sbjct: 547 VDIDKATAYAAEDADVTLRLWLVLKPRLAAVGLARVYERLERPLVPVLADMEERGITIDR 606 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----T 257 + L+ + + + E+ L + ++L LF L T+ + Sbjct: 607 QILSRLSGELAQKAAAFEDEIYELAG-ERFNVGSPKQLGDILFGRMNLPGGSKTKTGQWS 665 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T +VL + + + ++ + L ++ + T + A+ TG Sbjct: 666 TSAQVLEDLAAQGEPLPRKIVDWRQLTKLKSTYTDALPGYVHPQTKRVHTSYSMAATTTG 725 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P + + +R+ I++ G KL+ Sbjct: 726 RLSSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHKLL 760 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA +A +AF G D++ T + F V + + R K + Sbjct: 761 SADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEVRRRAKAINF 820 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y A L++ E + +++ + EH + Sbjct: 821 GIIYGISA-----FGLANQLSIERAEAGEYIKKYFERFPGIKDYMESTKAFVREHGYVET 875 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 G + + + +A G A +R V + Sbjct: 876 IFGRRAHYP--EIKSSNPSMRAFN---ERAAINAPIQGSAADVIRRAMVQVEPALAKAGL 930 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 ++ Sbjct: 931 GEKT--------------------------------------------------RMLLQV 940 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++ V DE + E ++ M + P+ A +PLK + + + Sbjct: 941 HDE---LIFEVEDEAI-------EAALPVIVSTMENAAMPAIAMRVPLKVDARAADNW 988 >gi|116071085|ref|ZP_01468354.1| DNA polymerase I [Synechococcus sp. BL107] gi|116066490|gb|EAU72247.1| DNA polymerase I [Synechococcus sp. BL107] Length = 998 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 114/714 (15%), Positives = 210/714 (29%), Gaps = 161/714 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVHD----------- 50 + ID ET ++ + + + H Sbjct: 400 IAIDTETTDLNPFK----------AELVGVGVCWGEANDALAYIPIGHKPPSELTEATPP 449 Query: 51 -----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 + L L + N+ ++R +L L + I TL+ Sbjct: 450 QQLPLETVLMALSPWLASPQHPKALQNAKYDRLILLRH-GLTLN-GVVIDTLLADY---- 503 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 L+ L E + T+ L + + YC DV Sbjct: 504 ---LRDAAAKHGLDVMSERE------FGFRPTTYGDLVGKKQTFADVEIEPASLYCGMDV 554 Query: 166 TVTREIFKRLEPLSSKE------------QELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 VTR + +L Q L + + G +DV TL+ + Sbjct: 555 HVTRRLALQLRQTLQAMGPQLLPLLEGVEQPLEPVLAQMEATGIRIDVPYLKTLSDELGS 614 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKK 268 +L+ E + + + ++L LF GL + T+ +T VL + Sbjct: 615 TLNRLETEAKQVAEVD-FNLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVLEKLEH 673 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 P V +R+ S+ ++ L + + GR+ + TGR S Q Sbjct: 674 DHPVVPLVLEHRV-LSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQ 731 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + S +R + EG L+ AD + IE R Sbjct: 732 NIPVRTE-------------------------YSRRIRKAFLPQEGWTLLSADYSQIELR 766 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +L ++GE+ +A+ TG+D++ T + +V+ DQR +GK + + Y GA Sbjct: 767 ILTHLSGEEVLQEAYRTGDDVHALTARLL--LDKDEVSADQRRLGKTINFGVIYGMGA-- 822 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 Q+ A TG++ + + + F + + +G Sbjct: 823 -QRFARETGVS--SAEAKEFLTKYKQRYPKVFAFLELQERLALSRGYVETILG------- 872 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 R P + + L+ P Sbjct: 873 ------------------------------------RRRPFHFDRNGLGRLLGKDPL--- 893 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 ++ + + Q R +Q S DI+ M+ Sbjct: 894 ----EIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQAMLLSQGIP 943 Query: 622 YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE+V E ++ + M + +PL E + + Sbjct: 944 ARLLLQVHDELVLEVAPDALDTTRNLVVNTMENAIK--LSVPLVVETGVGRDWM 995 >gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116] gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116] Length = 930 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 102/700 (14%), Positives = 198/700 (28%), Gaps = 155/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51 + +D ET S ++ ++ +F ++ + Sbjct: 354 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 +K LEN + + N F+ ++ +++ T++L+ + + Sbjct: 404 TALAAIKPILENPNSHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 461 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G E IA E+ ++ EY D VT Sbjct: 462 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLEQATEYAAEDADVTM 509 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L E L ++ + G +D + + T L Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTAL 569 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 +++ +L + ++L+ LF + GL +T + VL Sbjct: 570 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 627 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ S+ + L + +NS T + TGR S QN+P + Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA EG +V AD + IE R++A ++G Sbjct: 688 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 722 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF G+D++ +T A F V+ +VT +QR K + L Y A + Sbjct: 723 DQGLISAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSA-----FGLS 777 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L ++ N + + + F ++ + G Sbjct: 778 RQLGISRADAQKYMNLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAM 837 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R + G A KR + + + D+ Sbjct: 838 RR-----KGAERVAINAPMQGTAADIIKRAMIKIDEVI---------------RHDPDI- 876 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 E I+Q +V Sbjct: 877 ------------------------EMIMQ-------------VHDE-----------LVF 888 Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + F + M + +PL E K + Sbjct: 889 EVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGKNW 926 >gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2] gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2] Length = 932 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 104/699 (14%), Positives = 198/699 (28%), Gaps = 156/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET L+ +I +F HD + Sbjct: 356 AFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVL 405 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ V N F++++L +D+ T++ + + + Sbjct: 406 ATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIA-FDTMLESYVLDSVAGRHDMDS 463 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + I G +D + ++ + + +L++ Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERAGVLIDQNILAAHSKELTIRLDELEK 571 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 572 QAHEL-AEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + + TGR S QN+P + Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA +G ++ AD + IE R++A ++ + Sbjct: 689 GRR-------------------------IRQAFIAPKGYCIMAADYSQIELRIMAHLSQD 723 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF G+D++ T A F +VT +QR K + L Y A Sbjct: 724 NGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSA-----FGLAR 778 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + + E + + ++ E G R + Sbjct: 779 QLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANR 838 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + G A KR + + + + ++ + Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRV------------- 880 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 I+Q +V VH Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH------ 893 Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ +A + LM + A +PLK + + Sbjct: 894 --ESVLQSAEQKIRELMEQSMQLA--VPLKVDVGVGANW 928 >gi|148657518|ref|YP_001277723.1| DNA polymerase I [Roseiflexus sp. RS-1] gi|148569628|gb|ABQ91773.1| DNA polymerase I [Roseiflexus sp. RS-1] Length = 965 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 115/711 (16%), Positives = 206/711 (28%), Gaps = 175/711 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVMPQV 56 D ETR L ++ A H + Sbjct: 381 AFDTETRGTNPLRD----------DLVGIALATIPGSGWYVPLGHTTGEAQLPRERVIAA 430 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEA 115 L+ + + +AHN+ F+ VL+ IP+ T++ A LK + Sbjct: 431 LRPFFADPARSRIAHNAKFDIEVLERA---GIPVAGVAFDTMLAAALLDKRRNLKDLAFY 487 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + +E + LI Y D +T + L Sbjct: 488 ELNLAAPLESIEALI----------GKGKNQVTFADVPIARATPYAAADADMTLRLKPAL 537 Query: 176 EPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E E L + + G +DV L + + E +++Q++ + Sbjct: 538 EAKLRAAGSVADVFYRLEMPLVPVLVRMEQAGILLDVPYMRALGERMGRELEQIEQQIYA 597 Query: 225 LTYGLVSSSRCLEKLKTWLFL-ETGLHLE------DLTETTCQRVLSSN--KKLTPQAIQ 275 + + ++L LF + L + + L T Sbjct: 598 IAGQT-FNINSGDQLSEVLFGPKINLPTTGLDRTRTGRYSLTAQALEELQASDTTGIIEL 656 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R S+ ++ L +N + GR+ LGA+ TGR S QN+P + Sbjct: 657 ILRHRR-LSKLKSTYVDELPALVNPETGRVHTDYNQLGAA-TGRLSSNSPNLQNIPTRTE 714 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 E VR IA+ G L+ AD + IE RVLA M G Sbjct: 715 EGRE-------------------------VRRGFIAAPGHLLIAADYSQIELRVLAHMTG 749 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + ++ F G D++ T AR F V + V K+QR I K + + Y Sbjct: 750 DPNLIQTFIEGRDIHAATAARLFGVGFSAVDKNQRRIAKTVVFGVIY-----GISPFGLA 804 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L + + + Sbjct: 805 QRL---------------------------------------GISREQARGLIDSLFDQF 825 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R+ + + + + G + GR D+ Sbjct: 826 PRIRDY---IDRTLDIGRSEGY-----------------------VQSLFGRRRPMFDLR 859 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 + + RE +Q+ + DI+ M+ ++L V Sbjct: 860 VS----GPRRQAAEREAINHP------IQSTAADIMKLAMIAVDAELQRRQMRTRMLLQV 909 Query: 629 HDEIVCETPDTDEFN-ASMLYHLMTSN-----PSWAKGLPLKAEGYESKRY 673 HDE++ E P+ + + +++ M P +A +PL+ E + Sbjct: 910 HDELIFEAPEAEVDDVVALVRERMEGVLHGMEPPFA--VPLRVEIETGPNW 958 >gi|37520205|ref|NP_923582.1| DNA polymerase I [Gloeobacter violaceus PCC 7421] gi|35211198|dbj|BAC88577.1| DNA polymerase [Gloeobacter violaceus PCC 7421] Length = 938 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 101/696 (14%), Positives = 189/696 (27%), Gaps = 165/696 (23%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKE 59 D ET + ++ ++ H + L Sbjct: 375 DTETNNLDP----------RHARLVGIGCAWEPGVAYYLPLAHQQGSNLETDAVVAALTP 424 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 ++ + V N+ ++ VL+ + + ++ + + A Sbjct: 425 YWQDRERPKVLQNAKYDWLVLRNY-GVALAGIA-FDPMLASYVLDPEGKHNLMTLAQNHL 482 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 M + L+ + + YC D VT + L+ Sbjct: 483 QITMGSYEALVP-------------KGQTIDAVEIAAVSRYCGEDAAVTLRLVPVLQAKL 529 Query: 180 SKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 ++ L + + +RG +D A L Q +D + L+QE +L Sbjct: 530 DEDPRLAGIFKEIEVPLEPVLARMEERGIRIDKAYLGELAQELDRDLESLEQEAYTLAGS 589 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + ++L LF + GL + + +T VL + P + + R Sbjct: 590 K-FNLGSPKQLSDLLFNKLGLSAKKSRKTSLGYSTDAAVLEKLRDDHPIVEAILSYR-TL 647 Query: 284 SRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ ++ L ++ R+ + TGR S QN+P + Sbjct: 648 AKLKSTYVDALPLLVDPRTDRVHTDFNQTVTT-TGRLSSSNPNLQNIPVRT--------- 697 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 S +R + G LV AD + IE R+LA + E L+AF Sbjct: 698 ----------------SFSRRIRRAFVPEPGWLLVAADYSQIELRILAHLTQEPVLLEAF 741 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 +TG D++ T Sbjct: 742 QTGGDVHTLTARLLLG-------------------------------------------- 757 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + S N+ A E T E KA+ +++ V Sbjct: 758 --REEVTSEERRLAKIINYGVVYGMGARRFARETGVSATEAEDFIKAFYRRYPAVFGFME 815 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + + + + GR +R +G Sbjct: 816 QTRRMAVE--------------------------QGYVETLLGRRRYFRGLGQLNQ---R 846 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDIVLTVHDEIVCETPD 638 R +Q + DI+ M+ + ++L VHDE+V E P Sbjct: 847 DREGALRAAFNAP------IQGTAADIIKIAMVRLEQTLAGRRTRLLLQVHDELVFEMPP 900 Query: 639 TDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 + L M + +PLK E + Sbjct: 901 EERPEVEPLIRSGMENALDLL--VPLKVELNAGPNW 934 >gi|299142040|ref|ZP_07035174.1| DNA polymerase type I [Prevotella oris C735] gi|298576502|gb|EFI48374.1| DNA polymerase type I [Prevotella oris C735] Length = 920 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 101/694 (14%), Positives = 196/694 (28%), Gaps = 147/694 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQ---VL 57 L +D ET S + D ++ F ++H +D Q + Sbjct: 348 RILSLDTETTSTNAI----------DAELVGLCFAVEEHKAFYVAIPNDREEALQYVNIF 397 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115 K E+ + + N ++ VLK + + + T++ + + E Sbjct: 398 KPVYEDPSILKIGQNLKYDYEVLKNY-GVTL-GGKMFDTMLAHYVIQPELHHNMDYMAET 455 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L K ELI K K + EY D +T ++ L Sbjct: 456 LLH--YKTIHIDELIGPRGKH---------QKSMRDLDPKDVYEYAAEDADITLQLKNVL 504 Query: 176 EPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 EP E L + + G +D H + I +L+Q++ Sbjct: 505 EPKLKETGTENLFWNIEMPLVPVLADMELNGVRLDTDALHDTSMIFTERMNRLEQQIYEK 564 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL S + P + + R Sbjct: 565 AG-ETFNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTSEEVLQSLRAKHPIVADILDYR 623 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + + L + +N T + TGR S QN+P S +E Sbjct: 624 -GLKKLLGTYVEALPKLINKRTGHIHTSFNQALTATGRLSSSDPNLQNIPVRSEDGKE-- 680 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R C + + AD + IE R++A ++G++ ++ Sbjct: 681 -----------------------IRKCFVPEQDCMFFSADYSQIELRIMAHLSGDENMIE 717 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ T A+ ++ A VT ++R K + Y + ++ Sbjct: 718 AFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYG-----ITTYGLAQRMEID 772 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + +E + Sbjct: 773 NREARELIEGYFATFPKVRAYMEQAKEEARRKGYAETLF--------------------- 811 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 +RR +P + K + + Sbjct: 812 --------------------GRRRYLPDITSKNGTVRGFAERNA--------INAPIQGS 843 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 ++ + ENI ++L VHDE+ + Sbjct: 844 EADIIKIAMIRIWQRFKAENI-------------------RSKMILQVHDELNFSVYPDE 884 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PL A+ K + Sbjct: 885 KERVEKIVLEEMQGA--YQLQVPLIADAGWGKNW 916 >gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302] gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302] Length = 920 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 101/694 (14%), Positives = 196/694 (28%), Gaps = 147/694 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQ---VL 57 L +D ET S + D ++ F ++H +D Q + Sbjct: 348 RILSLDTETTSTNAI----------DAELVGLCFAVEEHKAFYVAIPNDREEALQYVNIF 397 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115 K E+ + + N ++ VLK + + + T++ + + E Sbjct: 398 KPVYEDPSILKIGQNLKYDYEVLKNY-GVTL-GGKMFDTMLAHYVIQPELHHNMDYMAET 455 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L K ELI K K + EY D +T ++ L Sbjct: 456 LLH--YKTIHIDELIGPRGKH---------QKSMRDLDPKDVYEYAAEDADITLQLKNVL 504 Query: 176 EPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 EP E L + + G +D H + I +L+Q++ Sbjct: 505 EPKLKETGTENLFWNIEMPLVPVLADMELNGVRLDTDALHDTSMIFTERMNRLEQQIYEK 564 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL S + P + + R Sbjct: 565 AG-ETFNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTNEEVLQSLRAKHPIVADILDYR 623 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + + L + +N T + TGR S QN+P S +E Sbjct: 624 -GLKKLLGTYVEALPKLINKRTGHIHTSFNQALTATGRLSSSDPNLQNIPVRSEDGKE-- 680 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R C + + AD + IE R++A ++G++ ++ Sbjct: 681 -----------------------IRKCFVPEQDCMFFSADYSQIELRIMAHLSGDENMIE 717 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ T A+ ++ A VT ++R K + Y + ++ Sbjct: 718 AFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYG-----ITTYGLAQRMEID 772 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + +E + Sbjct: 773 NREARELIEGYFATFPKVRAYMEQAKEEARRKGYAETLF--------------------- 811 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 +RR +P + K + + Sbjct: 812 --------------------GRRRYLPDITSKNGTVRGFAERNA--------INAPIQGS 843 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 ++ + ENI ++L VHDE+ + Sbjct: 844 EADIIKIAMIRIWQRFRAENI-------------------RSKMILQVHDELNFSVYPDE 884 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PL A+ K + Sbjct: 885 KERVEKIVLEEMQGA--YQLQVPLIADAGWGKNW 916 >gi|89070699|ref|ZP_01157968.1| DNA polymerase I [Oceanicola granulosus HTCC2516] gi|89043720|gb|EAR49924.1| DNA polymerase I [Oceanicola granulosus HTCC2516] Length = 933 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 93/689 (13%), Positives = 190/689 (27%), Gaps = 168/689 (24%) Query: 30 VILFAFGFDDHPVELWDCVHD--------------------PVMPQVLKEALENTDVTIV 69 ++ A + H +L+ LE+ + V Sbjct: 364 LVGLALAVEPGQAGYLPLRHVGDSEQGLFGSSDLAEGQMDFDAALALLRPMLEDDSIMKV 423 Query: 70 AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEG 126 A ++ +L I + T +L+ + L + + L G Sbjct: 424 AQDAKAAMKLLGRH---GIALAPVDDTHLLSYALNSGLHGHTLDTLSDRL--------LG 472 Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ--- 183 I + R Y + + +++ L+ ++Q Sbjct: 473 HRPIELKS----VVGTGKSARTFDRVPVEAVTPYAAEEADIVLRLWQALKQQLFRKQVTR 528 Query: 184 -------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L + + G VD ++ + L+ E+ L + Sbjct: 529 VYETLERPLIPVLAGMERAGIRVDRDTLSRMSNAFSQKMAGLEAEVYELAG-REFNLGSP 587 Query: 237 EKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L LF E GL +T T VL ++ + R S+ + Sbjct: 588 KQLGEILFDELGLPGGKKGKTGAYGTGADVLEDLATEHDLPGRILDWRQ-ISKLKSTYTD 646 Query: 293 TLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 +L + + R+ + GA+ TGR + QN+P + Sbjct: 647 SLQGYIQPETSRVHTSYSQAGAA-TGRLASTEPNLQNIPVRTEEGRR------------- 692 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A GK LV D + IE R+LA +AG +AF +G+D++ Sbjct: 693 ------------IREAFVADLGKVLVSLDYSQIELRILAHVAGLDALREAFRSGQDIHAA 740 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + FNV ++T D R K + G++ Sbjct: 741 TASEMFNVPLEEMTPDVRRQAKAIN--------------FGVIYGIS------------- 773 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 A + + ++ + + +E ++ Sbjct: 774 -----------------GFGLARSLRIPREEAQGFINRYFERFPGIRDYMDETVAFAKE- 815 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + + GR + ++ R Sbjct: 816 -------------------------HGFVQTLFGRKIHTPEINAK----GPGAGFARRAA 846 Query: 592 TYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDIVLTVHDEIVCETPDTDEFN-ASM 646 +Q + D++ M+ ++L VHDE++ E + + Sbjct: 847 INAP------IQGTAADVIRRAMVRMPAAIEGLPATMLLQVHDELLFEVEEGAVEALVAA 900 Query: 647 LYHLMTSN--PSWAKGLPLKAEGYESKRY 673 +M + P +PL + + + Sbjct: 901 AREVMEAAAMPVVQFTVPLVVDAGQGTNW 929 >gi|157413679|ref|YP_001484545.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215] gi|157388254|gb|ABV50959.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215] Length = 976 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 109/712 (15%), Positives = 197/712 (27%), Gaps = 160/712 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD---------- 50 + +D ET S + D ++ + + H Sbjct: 382 IVSLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQTKKETPNQLS 431 Query: 51 -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPS 107 + L+ +E+ NS F+R + L + TL+ Sbjct: 432 IEYVFSKLRNWIEDPKKEKALQNSKFDRQIFFNH-GLILK-GVTFDTLLADYLLNNQEKH 489 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L + L K + + +NK YC DV + Sbjct: 490 GLSEISFRL---------------FGFKPPSFKETVGKNKDFSFVDIDEASIYCGYDVFL 534 Query: 168 TREIFKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 T +I K + E L + + G +D+ L++ + Sbjct: 535 TFKIVKIFKERFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTL 594 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270 ++ ++ L + ++L LF + L + T+ +T VL Sbjct: 595 EDIESKVYEL-AEENFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEH 653 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 + +R S+ ++ L +N GR+ A+ TGR S QN+ Sbjct: 654 EIIQHLIKHR-TLSKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNI 711 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P + S +R + + KL+ AD + IE R+L Sbjct: 712 PVRTE-------------------------FSRRIRKAFLPEKNCKLLSADYSQIELRIL 746 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A E+ + AF +D++ T F Q++ D+R +GK + + Y G K Sbjct: 747 AHLADEEILINAFHKNDDIHSLTARLIF--EKEQISSDERRVGKTINFGVIYGMGIKK-- 802 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 A +TG++ E + F + G E Sbjct: 803 -FARSTGVSTPE--AKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK 859 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + K+ + L S R Sbjct: 860 -------------------------------------NGLGRLIGKDPYEIDLQSARR-- 880 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623 Q R +Q S DI+ M+ K Sbjct: 881 -----------AGMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKFIEMNVPAK 923 Query: 624 IVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE++ E ++ M +PL + + Sbjct: 924 MLLQVHDELLFEVEQDSLEITTKLVKKTMEDCVK--LNVPLLVDIGIGDNWM 973 >gi|332159647|ref|YP_004296224.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325663877|gb|ADZ40521.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 932 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 107/698 (15%), Positives = 204/698 (29%), Gaps = 154/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET L+ +I +F HD + Sbjct: 356 AFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVL 405 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ V N F++++L +D+ T++ + + + Sbjct: 406 AQLKPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIA-FDTMLESYVLDSVAGRHDMDS 463 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511 Query: 172 FKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P + + L + I G +D + ++ + + +L++ Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEIPLLPILSRIERTGVLIDQNILVAHSKELTIRLDELEK 571 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 572 QAHEL-AEEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + + TGR S QN+P + Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA EG +++ AD + IE R++A ++ + Sbjct: 689 GRR-------------------------IRQAFIAPEGYRIMAADYSQIELRIMAHLSQD 723 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF G+D++ T A F ++ +VT +QR K + L Y A Sbjct: 724 KGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSA-----FGLAR 778 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 LN+ + E + + ++ E G R Sbjct: 779 QLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATR 838 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + G A KR + + + + ++ + Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRV------------- 880 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 I+Q +V VH E V E Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH-ESVLE 898 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + + LM + A +PLK + + Sbjct: 899 SAE------QKIRELMEQSMQLA--VPLKVDVGVGYNW 928 >gi|87124844|ref|ZP_01080692.1| DNA polymerase I [Synechococcus sp. RS9917] gi|86167723|gb|EAQ68982.1| DNA polymerase I [Synechococcus sp. RS9917] Length = 996 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 108/720 (15%), Positives = 200/720 (27%), Gaps = 166/720 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD----------- 50 + +D ET ++ + + H Sbjct: 391 VALDTETSDLNPFK----------AQLVGVGVCWGPELDDLAYIPVGHRPSAEPSLEDSS 440 Query: 51 -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARS 102 + L L + + N+ ++R +L +P+ + TL+ Sbjct: 441 AIQQLPLDTVLAQLAPWLASAEHPKALQNAKYDRLILLRH---GLPLGGVVMDTLLADYL 497 Query: 103 NGLP--SALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 L A+ E + +L+ + + Sbjct: 498 RDAAAKHGLDAMAERDYGIQP---TLFSDLV--------GKAKDGKASCFAEVEINQAAL 546 Query: 160 YCKGDVTVTREIFKRLEPLS------------SKEQELWYLDQTINDRGYCVDVALAHTL 207 YC DV +TR + L E L + + G +D L Sbjct: 547 YCGMDVHLTRRLALDLRQQLAAMGPRLLPLLDQVELPLEPVLALMEATGIRIDHPYLAAL 606 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTETTCQRV 262 + + +L+ E + + ++L LF GL + +T V Sbjct: 607 STEMAQTLERLETEAKQAAGM-EFNLASPKQLGELLFDTLGLDRKKSRRTKTGYSTDATV 665 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSG 321 L ++ P V +R S+ ++ L + + GR+ + TGR S Sbjct: 666 LEKLEQDHPVVPLVLEHR-TLSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSS 723 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 QN+P + S +R + G +L+ AD Sbjct: 724 SNPNLQNIPVRTE-------------------------FSRRIRKAFLPQAGWQLLSADY 758 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R+L ++GE+ +A+ G+D++ T + VT D+R +GK + + Y Sbjct: 759 SQIELRILTHLSGEEVLQQAYRDGDDVHALTARLL--LEKKAVTADERRLGKTINFGVIY 816 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 GA Q+ A TG++ + E + F + + +G Sbjct: 817 GMGA---QRFARETGVS--QAQAKEFLSKYKERYPKVFAFLELQERLALSRGYVETILG- 870 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 R P + + L+ Sbjct: 871 ------------------------------------------RRRPFHFDRNGLGRLLGK 888 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620 P ++ + Q R +Q S DI+ M+ A Sbjct: 889 DPL-------EIDLEVARRGGMEAQQLRAAANAP------IQGSSADIIKLAMIQLQAAL 935 Query: 621 -----GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE+V E T + M +PL E + Sbjct: 936 EQQSLPARLLLQVHDELVLEVDPTALERVRQLVVTTMEQAIQ--LSVPLVVETGVGANWM 993 >gi|33861696|ref|NP_893257.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640064|emb|CAE19599.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 976 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 114/712 (16%), Positives = 204/712 (28%), Gaps = 157/712 (22%) Query: 2 ATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHDPVMPQ--- 55 + +D ET S L D ++ F + + H + Sbjct: 380 KEIVALDTETNSLNPL----------DAELVGIGFCLGEEINDLFYIPLSHQSQKKEMNQ 429 Query: 56 --------VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107 L+ +E+ + N F+R + L++ TL+ Sbjct: 430 LAIEDVFFNLRSWIESPEKEKTLQNCKFDRQIFYNH-GLNLR-GVTFDTLLADYILNN-- 485 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 E LS E K T + +NK YC DV + Sbjct: 486 -----QEKHGLSEISFRE------FGFKPPTFKETVGKNKDFSFVDINDASTYCGYDVLL 534 Query: 168 TREIFKRLEPLS------------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 T +I K + E L + + G +D + L+ + Sbjct: 535 TFKIAKIFKERFNNENKDLTKLFKEIELPLEPVLSEMEMNGIRIDTTYLNELSGELKSTL 594 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270 +++ + + + ++L LF + L + T+ +T VL + Sbjct: 595 ENIEENVFEI-AKQEFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVEEH 653 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 + +R S+ ++ L ++ GR+ A+ TGR S QN+ Sbjct: 654 EIIPFLIKHR-TLSKLLSTYIDALPNLISEKTGRVHTNFNQA-ATATGRLSSSNPNLQNI 711 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P + S +R + +G KL+ AD + IE R+L Sbjct: 712 PVRTE-------------------------FSRRIRKAFLPEKGWKLLSADYSQIELRIL 746 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A E+ + AF +D++ T F + D+R +GK + + Y G K Sbjct: 747 AHLANEEILINAFHKNDDIHSLTARLIF--EKEDINSDERRVGKTINFGVIYGMGIKK-- 802 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 A +TG++ E + F + + + G E Sbjct: 803 -FARSTGVSTTE--AKEFLIKYKERYAKIFKFLEFQERLALSKGYVETIFGRKREFKFD- 858 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 K LI P Sbjct: 859 ------------------------------------------KNGLGRLIGKDPY----- 871 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------D 623 ++ + Q R +Q S DI+ M+ K Sbjct: 872 --EIDLQTARKAGMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKLLEMNIPVK 923 Query: 624 IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE++ E PD E ++ M +PL + + Sbjct: 924 MLLQVHDELLFEVQPDFLEITKDLVKETMEDCVK--LNVPLLVDIGVGNNWM 973 >gi|159903755|ref|YP_001551099.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211] gi|159888931|gb|ABX09145.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211] Length = 985 Score = 369 bits (947), Expect = e-99, Method: Composition-based stats. Identities = 109/716 (15%), Positives = 214/716 (29%), Gaps = 165/716 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVHDPV--------- 52 + ID ET S ++ + + P + H Sbjct: 387 VAIDTETTSLNPFQS----------ELVGIGLCWGERPEQIAYIPLGHITEDLFEDQSSN 436 Query: 53 -------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 + + L L +++ V N+ ++R + + + + TL+ + Sbjct: 437 LQLPLIDVIKGLSPWLGSSEHPKVLQNAKYDRLIFLQY-GIPLE-GVIMDTLLADYLCDV 494 Query: 106 PS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 +L+A+ + + +++ + YC Sbjct: 495 THRHSLEAMAKR---------------EFGFTPTNFNEIVGKDETFKNVSISTASLYCGM 539 Query: 164 DVTVTREIFKRLEPLSSKE------------QELWYLDQTINDRGYCVDVALAHTLNQIV 211 DV +TR+++ + + Q L + + RG +D+ L+ + Sbjct: 540 DVYLTRKLYFLKKSNLEEMGQKLIELLEKVEQPLEPILADMEARGIRIDIPYLKELSIEL 599 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTETTCQRVLSSN 266 + +++ + + ++L LF + GL + +T VL Sbjct: 600 NKALKNIEKSAYKIAKTD-FNLSSPKQLGEVLFEQLGLDKKKSRRTKTGWSTDANVLERL 658 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFP 325 + P V +R S+ + L + + GR+ + TGR S Sbjct: 659 QGDNPIVPLVIEHR-TLSKLLSTYVEALPQLVEAQTGRVHTDFNQAV-TATGRLSSSNPN 716 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P + S +R + EG +L+ AD + IE Sbjct: 717 LQNIPIRTE-------------------------FSRRIRKAFLPREGWQLLSADYSQIE 751 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA ++GE +A+ G+D++ T + +T ++R +GK + + Y G Sbjct: 752 LRILAHLSGEASLQEAYRNGDDVHALTAKIL--LDKESITSNERRLGKTINFGVIYGMGV 809 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 Q+ A +TG++ + N E + + ++ + + +G Sbjct: 810 ---QRFARSTGVSQSE--AKDFLNRYKERYTNVFSYLELQERLALSKGFVETILGRRRHF 864 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + KN L + L Sbjct: 865 HFDK-------------------------------------NGLGRLLGKNPLEIDLKLA 887 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620 R Q R +Q S DI+ M+ K Sbjct: 888 RR-------------AGMEAQQLRAAANAP------IQGSSADIIKVAMVKLDKELKNEG 928 Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674 +++L VHDE+V E T L H M +PL E K + Sbjct: 929 LPANLLLQVHDELVLEVDPTATEQVKALVIHTMEKAV--LLNVPLVVEASVGKNWM 982 >gi|167724604|ref|ZP_02407840.1| DNA polymerase I [Burkholderia pseudomallei DM98] Length = 620 Score = 369 bits (947), Expect = e-99, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 46 AFDTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 95 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 96 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 153 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 154 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 203 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + L+QE Sbjct: 204 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 263 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F L + T + T + VL + P + + Sbjct: 264 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 322 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N D T + TGR + QN+P + Sbjct: 323 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 380 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A G K+V AD + IE R++A ++ ++ L Sbjct: 381 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 416 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 417 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 471 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 472 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 522 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 523 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 564 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL V Sbjct: 565 -------------RARM--------IMQ-------------VHDE---LVLEV------- 580 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 581 -PEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 616 >gi|51594376|ref|YP_068567.1| DNA polymerase I [Yersinia pseudotuberculosis IP 32953] gi|186893363|ref|YP_001870475.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+] gi|51587658|emb|CAH19258.1| DNA polymerase A [Yersinia pseudotuberculosis IP 32953] gi|186696389|gb|ACC87018.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+] Length = 932 Score = 369 bits (947), Expect = 1e-99, Method: Composition-based stats. Identities = 104/699 (14%), Positives = 198/699 (28%), Gaps = 156/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET L+ +I +F HD + Sbjct: 356 AFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVL 405 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ V N F++++L +D+ T++ + + + Sbjct: 406 ATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIA-FDTMLESYVLDSVAGRHDMDS 463 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + I G +D + ++ + + +L++ Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 571 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 572 QAHEL-AEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + + TGR S QN+P + Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA +G ++ AD + IE R++A ++ + Sbjct: 689 GRR-------------------------IRQAFIAPKGYCIMAADYSQIELRIMAHLSQD 723 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF G+D++ T A F +VT +QR K + L Y A Sbjct: 724 NGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSA-----FGLAR 778 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + + E + + ++ E G R + Sbjct: 779 QLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANR 838 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + G A KR + + + + ++ + Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRV------------- 880 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 I+Q +V VH Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH------ 893 Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ +A + LM + A +PLK + + Sbjct: 894 --ESVLQSAEQKIRELMEKSMQLA--VPLKVDVGVGANW 928 >gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2] gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2] Length = 914 Score = 369 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 105/720 (14%), Positives = 195/720 (27%), Gaps = 192/720 (26%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAF------------------GFDDHPVELW 45 L ID ET S L ++ + ++ Sbjct: 317 LVIDTETTSLDPL----------QAELVGISLTLAAPGSDESEAKASRTAAGENGACWYL 366 Query: 46 DCVHDPV-------------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 H + + L L + + HN ++ VL D+P+ Sbjct: 367 PIAHRREDGSAAANQLPLAEVRRALAPLLADDRRLKLGHNLKYDLQVLHRH---DLPLAP 423 Query: 93 -WICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 T++ + L + E L L R R + Sbjct: 424 PLADTMIASYLIDPSRRSHGLDVLSEEL------------LQRRLTSFAEVTDRDRRPEA 471 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYC 198 A Y DV TR +++ +P E L + + G Sbjct: 472 FAHVAPAAAAAYSCEDVAATRLLWQLFQPKLAELELAELFYQVEITLLPILARMERVGIL 531 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256 +D + L E +L ++ L + +L LF L T+ Sbjct: 532 LDGQVLKELAAEFSQELERLSSKIYQLAGV-EFNINSPRQLGEVLFERLKLPHGRKTKGK 590 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLG 312 +T R L + R S+ ++ L +N DGR+ + Sbjct: 591 TGYSTDIRELERLAAYHDLPAAIIAQRN-LSKLKSTYVDKLSTLINPADGRIHTSFNQ-T 648 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P ++ +R IA+ Sbjct: 649 VTATGRLSSSNPNLQNIPVRTQEGRR-------------------------IRGAFIAAP 683 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G + + AD + I+ RVLA + + L+AF+ +D++ T A F V PA VT D R + Sbjct: 684 GHRFLAADYSQIDLRVLAHYSADPMLLEAFQQDQDIHRRTAAEIFRVNPAMVTADMRRVA 743 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ Sbjct: 744 KTINF--------------GIIYGMS------------------------------AFGL 759 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 A + + + + + V E+ + + Sbjct: 760 AEQLRCSRKEAQVFIDRYFELYRGVKTFMEEIVEQARR---------------------- 797 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 + + R ++ ++ R +Q + DI+ Sbjct: 798 ----DGFVRTLLKRRRQLPEINSSNKLRR---EFAERTAINTP------IQGTAADIIKL 844 Query: 613 GMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665 + + +L +HDE++ E P+ ++ L M + +PL+ Sbjct: 845 AAIACDRELRRKNFNTEALLQIHDELIFEVPEDEQAAVGKLVQQAMENVME--LTVPLRV 902 >gi|83716432|ref|YP_438805.1| DNA polymerase I [Burkholderia thailandensis E264] gi|257141887|ref|ZP_05590149.1| DNA polymerase I [Burkholderia thailandensis E264] gi|83650257|gb|ABC34321.1| DNA polymerase I [Burkholderia thailandensis E264] Length = 926 Score = 369 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 190/699 (27%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 352 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 402 AKLTPWLEDASKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 459 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ L R K E + EY D +T ++ Sbjct: 460 ALRH----------LGVRTIKYEDVAGKGAQQIGFDEVPLEQASEYAAEDADITLQLHHA 509 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + +L+Q+ Sbjct: 510 LYPQIAREPGLSRVYRDIEMPVSLVLRKMERTGVLIDSDRLGRQSSEIATRLIELEQQAY 569 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F L + T + T + VL + P + + Sbjct: 570 GLAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 628 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N + T + TGR + QN+P + Sbjct: 629 R-GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 686 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA G K+V AD + IE R++A ++ ++ L Sbjct: 687 ------------------------IREAFIAPPGSKIVSADYSQIELRIMAHISEDESLL 722 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 723 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 777 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 778 TRDAAKLYIDRYFLRYPGVARYMEETRARAKEKGYVETVFGR---------RLWLPEING 828 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 829 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 870 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL E Sbjct: 871 -------------RARM--------IMQ-------------VHDE---LVL--------E 885 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+++ L +M +PL AE + + Sbjct: 886 VPESELSIVREKLPEMMCGVAK--LKVPLVAEVGAGENW 922 >gi|113955418|ref|YP_730141.1| DNA polymerase I [Synechococcus sp. CC9311] gi|113882769|gb|ABI47727.1| DNA polymerase I [Synechococcus sp. CC9311] Length = 994 Score = 369 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 107/712 (15%), Positives = 208/712 (29%), Gaps = 158/712 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD----------P 51 + +D ET ++ + + H Sbjct: 397 VALDTETTDLNPFR----------AQLVGIGMCWGPGSDDLAYIPVSHQGDPIPDQLPLE 446 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP--SA 108 + Q L L + + N+ ++R +L +P+ + TL+ Sbjct: 447 TVLQALAPWLASGEHPKALQNAKYDRLILLRH---GLPLAGVVMDTLLADYLRDAAAKHG 503 Query: 109 LKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L A+ + +S +L+ + + +YC DV + Sbjct: 504 LDAMAQRDYGISP---TLFSDLV--------GKAKEGKASNFSEVPLESAAQYCGMDVHL 552 Query: 168 TREIFKRLEPLSS------------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 TR++ L E L + + G +DV L+ + Sbjct: 553 TRKLAIDLNQQLEALGPQLPNLLSKVELPLEPVLAVMEATGIRIDVPYLEALSCEIGTNL 612 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLT 270 +L+ + + + ++L LF GL + +T VL + Sbjct: 613 ERLEASAKE-AAEIDFNLASPKQLGDLLFNTLGLDRKKSRRTKTGYSTDATVLEKLEHDH 671 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P V +R+ S+ ++ L + + GR+ + TGR S QN+ Sbjct: 672 PVVPLVLEHRV-LSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQNI 729 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P + S +R + +G L+ AD + IE R+L Sbjct: 730 PVRTE-------------------------YSRRIRKAFLPQDGWTLLSADYSQIELRIL 764 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 ++GE+ +A+ G+D++ T + +V+ D+R +GK + + Y GA Q Sbjct: 765 THLSGEEVLQQAYRDGDDVHALTARLL--LDKDEVSPDERRLGKTINFGVIYGMGA---Q 819 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 + A TG++ + + + + F + + +G Sbjct: 820 RFARETGVSQSE--AKDFLSKYKQRYPKVFAFLELQERLALSQGYVETILG--------- 868 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 R P + + L M P Sbjct: 869 ----------------------------------RRRPFHFDRNGLGRLNGMDPL----- 889 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623 ++ + Q R +Q S DI+ M+ Sbjct: 890 --EINLEVARRGGMEAQQLRAAANAP------IQGSSADIIKLAMVQLQAKLESKNLPAR 941 Query: 624 IVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE+V ET + M + +PL+ E + Sbjct: 942 LLLQVHDELVLETEPEALAVVEELVVQTMKNAID--LSVPLEVETGNGANWM 991 >gi|167577153|ref|ZP_02370027.1| DNA polymerase I [Burkholderia thailandensis TXDOH] Length = 926 Score = 369 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 189/699 (27%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 352 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 402 AKLTPWLEDASKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 459 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ L R K E + EY D +T ++ Sbjct: 460 ALRH----------LGVRTIKYEDVAGKGAQQIGFDEVPLEQASEYAAEDADITLQLHHA 509 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + +L+Q+ Sbjct: 510 LYPQIAREPGLARVYRDIEMPVSLVLRKMERTGVLIDTDRLGRQSSEIATRLIELEQQAY 569 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F L + T + T + VL + P + + Sbjct: 570 GLAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 628 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N + T + TGR + QN+P + Sbjct: 629 R-GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 686 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA G K+V AD + IE R++A ++ ++ L Sbjct: 687 ------------------------IREAFIAPPGSKIVSADYSQIELRIMAHISEDESLL 722 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 723 RAFANGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 777 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 778 TRDAAKLYIDRYFLRYPGVARYMEETRARAKEKGYVETVFGR---------RLWLPEING 828 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 829 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 870 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL E Sbjct: 871 -------------RARM--------IMQ-------------VHDE---LVL--------E 885 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 886 VPEGELSIVREKLPEMMCGVAK--LKVPLVAEVGAGENW 922 >gi|167615322|ref|ZP_02383957.1| DNA polymerase I [Burkholderia thailandensis Bt4] Length = 926 Score = 369 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 190/699 (27%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 352 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 402 AKLTPWLEDASKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 459 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ L R K E + EY D +T ++ Sbjct: 460 ALRH----------LGVRTIKYEDVAGKGAQQIGFDEVPLEQASEYAAEDADITLQLHHA 509 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + +L+Q+ Sbjct: 510 LYPQIAREPGLARVYRDIEMPVSLVLRKMERTGVLIDSDRLGRQSSEIATRLIELEQQAY 569 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F L + T + T + VL + P + + Sbjct: 570 GLAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 628 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N + T + TGR + QN+P + Sbjct: 629 R-GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 686 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA G K+V AD + IE R++A ++ ++ L Sbjct: 687 ------------------------IREAFIAPPGSKIVSADYSQIELRIMAHISEDESLL 722 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 723 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 777 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 778 TRDAAKLYIDRYFLRYPGVARYMEETRARAKEKGYVETVFGR---------RLWLPEING 828 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 829 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 870 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL E Sbjct: 871 -------------RARM--------IMQ-------------VHDE---LVL--------E 885 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+++ L +M +PL AE + + Sbjct: 886 VPESELSIVREKLPEMMCGVAK--LKVPLVAEVGAGENW 922 >gi|33240684|ref|NP_875626.1| DNA polymerase I [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238212|gb|AAQ00279.1| DNA polymerase I 3'-5' exonuclease and polymerase domains [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 985 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 109/716 (15%), Positives = 216/716 (30%), Gaps = 165/716 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD--HPVELWDCVHD----------- 50 + ID ET S ++ F + + + H+ Sbjct: 387 VAIDTETTSLNPFK----------AELVGLGFCWGENLDDIAYIPLGHNSQGELKDQSIR 436 Query: 51 -----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 + Q L L ++ V N+ ++R + + + + TL+ + Sbjct: 437 QQLPIQNVIQSLTPWLSSSYHPKVLQNAKYDRLIFL-HNGIPLE-GVVMDTLLADYLSNS 494 Query: 106 P--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 +L + + + L + + YC Sbjct: 495 TNKHSLDEIAKR---------------EYGFTPINFKELVGKGETFKDVDIDTASIYCGM 539 Query: 164 DVTVTREIFKRLEPLSSKE------------QELWYLDQTINDRGYCVDVALAHTLNQIV 211 DV +TR++ R+ + Q L + + RG C+D+ L++ + Sbjct: 540 DVYLTRKLSFRIRSQLQTKGSELIQLLEKVEQPLEPILAEMEARGICIDIPYLKELSKEL 599 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSN 266 + L+++ + ++L LF + L + T+ +T VL Sbjct: 600 NQTLKGLEEQAYKSAGF-EFNLNSPKQLGEILFDKLALDKKKSRKTKTGWSTDANVLERL 658 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFP 325 + P + +R S+ ++ L + + GR+ + TGR S Sbjct: 659 EADHPLVPLLVEHR-TLSKLVSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPN 716 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P + S +R + E KL+ AD + IE Sbjct: 717 LQNIPIRTE-------------------------FSRRIRKAFLPQENWKLISADYSQIE 751 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA ++GE+ +A++ G+D++ T + + ++R +GK + + Y GA Sbjct: 752 LRILAHLSGEEILQEAYKNGDDVHTLTAKIL--LEKESINSNERRLGKTINFGVIYGMGA 809 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 Q+ A +TGLN + N E + +F + +G Sbjct: 810 ---QRFARSTGLNQSE--AKDFLNRFKERYPKVFSFLELQERLALSKGYVQTLLGR---- 860 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + + + K L+ P Sbjct: 861 --RRYFN-------------------------------------FDKNGLGRLLGSDPM- 880 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620 ++ R+ Q R +Q S DI+ M+ Sbjct: 881 ------NIDLKRARRAGMEAQQLRAAANAP------IQGSSADIIKIAMVQLATKLKVSG 928 Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674 +++L VHDE+V E + + M + A +PL + Sbjct: 929 VAANLLLQVHDELVLEVEPSVIEEVKNIVVSTMENAVHLA--VPLVVHASIGDNWM 982 >gi|319775212|ref|YP_004137700.1| DNA polymerase I [Haemophilus influenzae F3047] gi|317449803|emb|CBY86011.1| DNA polymerase I [Haemophilus influenzae F3047] Length = 610 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 102/700 (14%), Positives = 198/700 (28%), Gaps = 155/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51 + +D ET S ++ ++ +F ++ + Sbjct: 34 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 83 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 +K LEN + + N F+ ++ +++ T++L+ + + Sbjct: 84 TALAAIKPILENPNSHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 141 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G E IA E+ ++ EY D VT Sbjct: 142 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLEQATEYAAEDADVTM 189 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L E L ++ + G +D + + T L Sbjct: 190 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTAL 249 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 +++ +L + ++L+ LF + GL +T + VL Sbjct: 250 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 307 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ S+ + L + +NS T + TGR S QN+P + Sbjct: 308 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 367 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA EG +V AD + IE R++A ++G Sbjct: 368 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 402 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF G+D++ +T A F V+ +VT +QR K + L Y A + Sbjct: 403 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSA-----FGLS 457 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L ++ N + + + F ++ + G Sbjct: 458 RQLGISRADAQKYMNLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAM 517 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R + G A KR + + + D+ Sbjct: 518 RR-----KGAERVAINAPMQGTAADIIKRAMIKIDEVI---------------RHDPDI- 556 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 E I+Q +V Sbjct: 557 ------------------------EMIMQ-------------VHDE-----------LVF 568 Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + F + M + +PL E K + Sbjct: 569 EVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGKNW 606 >gi|253690587|ref|YP_003019777.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757165|gb|ACT15241.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 929 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 104/697 (14%), Positives = 199/697 (28%), Gaps = 153/697 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54 D ET LT +I +F HD + Sbjct: 354 AFDTETDGLDTLT----------ANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRAKVL 403 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 + K LE+ + + N F++ V++ ++D+ T++ + + + Sbjct: 404 ALFKPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIA-FDTMLESYVLDSVAGRHDMDS 461 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT + Sbjct: 462 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLHL 509 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++L L + I G +D A+ ++ + +L+ Sbjct: 510 HQKLWGKLQPHADLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKELTTRLAELET 569 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L +T + VL+ P + Sbjct: 570 QAYELAG-EEFNLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPLPKLI 628 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N + T + TGR S QN+P + Sbjct: 629 LEYR-GLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEG 687 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA +G +V AD + IE R++A ++G++ Sbjct: 688 RR-------------------------IRQAFIAPKGYSIVAADYSQIELRIMAHLSGDK 722 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G D++ T + F A +VT +QR K + L Y A + Sbjct: 723 GLLNAFANGLDIHRATASEVFGTALDKVTSEQRRSAKAINFGLIYGMSA-----FGLSRQ 777 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 LN+ N E + +++ ++ EH G R +R Sbjct: 778 LNIPRSESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMAR 837 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 +A G A K+ + + + Sbjct: 838 -----KGAERAAINAPMQGTAADIIKKAMIAIDDWLQKDAPQ------------------ 874 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 + I+Q +V +HD ++ Sbjct: 875 ---------------------VKMIMQ-------------VHDE---LVFEIHDSVI--- 894 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + S + LM +PL+ + + Sbjct: 895 ----EESISKIKTLMEGCME--LNVPLQVDIGTGMNW 925 >gi|167820743|ref|ZP_02452423.1| DNA polymerase I [Burkholderia pseudomallei 91] Length = 622 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 48 AFDTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 97 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 98 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 155 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 156 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 205 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + L+QE Sbjct: 206 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 265 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F L + T + T + VL + P + + Sbjct: 266 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 324 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N D T + TGR + QN+P + Sbjct: 325 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 382 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A G K+V AD + IE R++A ++ ++ L Sbjct: 383 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 418 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 419 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 473 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 474 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 524 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 525 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 566 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL V Sbjct: 567 -------------RARM--------IMQ-------------VHDE---LVLEV------- 582 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 583 -PEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 618 >gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473] gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473] Length = 934 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 107/698 (15%), Positives = 200/698 (28%), Gaps = 154/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54 D ET L+ +I +F HD + + Sbjct: 358 AFDTETDGLDTLS----------ANLIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRSWVL 407 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ V N F++++L +++ T++ + + + Sbjct: 408 TTLKPLLEDEQALKVGQNLKFDKSLLARY-GIELRGIA-FDTMLESYVLNSVAGRHDMDS 465 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A Y D VT ++ Sbjct: 466 LSERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQASPYAAEDADVTLQL 513 Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + P E L + I G +D ++ T +Q + + T+L++ Sbjct: 514 HLAMWPKLQESEDLLRVFQQIEMPLLPILSRIERTGVLIDQSILATHSQELTIRLTELEK 573 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 574 QAHEL-AEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVL 632 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + + TGR S QN+P + Sbjct: 633 LEYR-GLAKLKSTYTDKLPLMINPISGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 690 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA G ++ AD + IE R++A ++ + Sbjct: 691 GRR-------------------------IRQAFIAPAGYCILAADYSQIELRIMAHLSQD 725 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF G+D++ T A F + VT +QR K + L Y A Sbjct: 726 KGLLAAFAEGKDIHRATAAEVFGLPLENVTTEQRRSAKAINFGLIYGMSA-----FGLAR 780 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 LN+ + E + + ++ + G R + Sbjct: 781 QLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNANR 840 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + G A KR + + + + Sbjct: 841 R-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQ-------------------- 875 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 L I+Q +V VH+ +V Sbjct: 876 ------------------AEPLVRVIMQ-------------VHDE---LVFEVHESVV-- 899 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + LM + +PLK E K + Sbjct: 900 -----ESATQTICDLMEQSMQ--LDVPLKVEVGVGKNW 930 >gi|296135724|ref|YP_003642966.1| DNA polymerase I [Thiomonas intermedia K12] gi|295795846|gb|ADG30636.1| DNA polymerase I [Thiomonas intermedia K12] Length = 934 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 109/702 (15%), Positives = 205/702 (29%), Gaps = 165/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54 ID ET S + ++ + H + Sbjct: 361 AIDTETDSLDPMR----------ARLVGISLSVAPGEAAYLPLAHAYPGAPEQLPMAEVL 410 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112 + L+ LEN D + N+ ++R V + I + TL+ + P +L ++ Sbjct: 411 ERLRPWLENADKPKLGQNAKYDRHVFANA-GVTIRGYA-HDTLLESYVIEAHKPHSLDSL 468 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + E + + A + Y D +T ++ Sbjct: 469 VSRHLGRDDTLS-----------YEQVCGKGTKAITFDQVALDVATRYSGEDADLTLQVH 517 Query: 173 KRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 +RL P + ++ + Q I G VD L + + + L+ + Sbjct: 518 QRLWPQIQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLLRAQSGELGAKMQTLEAQA 577 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278 L G + +++ LF L ++ T +T + VL + P + + Sbjct: 578 FELAGGA-FNLGSPKQIGEILFDRLQLPVQKKTASGAPSTDEEVLEKLAEDYPLPRVILD 636 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R S+ L + +N D T + TGR + QN+P + Sbjct: 637 HR-SLSKLKSTYTEKLPQMINPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR 695 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA +G + +D + IE R++A ++ + Sbjct: 696 -------------------------IREAFIAPKGWLIASSDYSQIELRIMAHLSQDAGL 730 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF GED++ T A F V P +V+ DQR + KV+ G++ Sbjct: 731 LAAFAAGEDIHRATAAEIFGVTPLEVSSDQRRMAKVINF--------------GLIYGMS 776 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A +A + + ++ V+ Sbjct: 777 ------------------------------AFGLARNLGLERSAAQLYIDRYFARYPGVA 806 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + GR L D+ + Sbjct: 807 AYMERTRKLAAE--------------------------QGYVETVFGRRLWLPDIHASGP 840 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEI 632 R +Q + D++ M+ K +V+ VHDE+ Sbjct: 841 RRAAAERA----------AINAPMQGTAADLIKMAMIAVDAALMREKLRSRVVMQVHDEL 890 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E P+ + + LM +PL AE + Sbjct: 891 VLEVPEEETHWVREHIPRLMAGVAQ--LDVPLLAEMGLGANW 930 >gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influenzae Rd KW20] gi|260579947|ref|ZP_05847777.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW] gi|1169402|sp|P43741|DPO1_HAEIN RecName: Full=DNA polymerase I; Short=POL I gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd KW20] gi|260093231|gb|EEW77164.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW] Length = 930 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 101/700 (14%), Positives = 199/700 (28%), Gaps = 155/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51 + +D ET S ++ ++ +F ++ + Sbjct: 354 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 +K LEN ++ + N F+ ++ +++ T++L+ + + Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 461 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G E IA E+ ++ EY D VT Sbjct: 462 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLEQATEYAAEDADVTM 509 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L E L ++ + G +D + + T L Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTAL 569 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 +++ +L + ++L+ LF + L +T + VL Sbjct: 570 EKQAYALAGQP-FNLASTKQLQEILFDKLELPVLQKTPKGAPSTNEEVLEELSYSHELP- 627 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ S+ + L + +NS T + TGR S QN+P + Sbjct: 628 KILVKHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA EG +V AD + IE R++A ++G Sbjct: 688 EGRH-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 722 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF G+D++ +T A F V+ +VT +QR K + L Y A + Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSA-----FGLS 777 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L ++ + + + + F ++E + G Sbjct: 778 RQLGISRADAQKYMDLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAM 837 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R + G A KR + L + D+ Sbjct: 838 RR-----KGAERVAINAPMQGTAADIIKRAMIKLDEVI---------------RHDPDI- 876 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 E I+Q +V Sbjct: 877 ------------------------EMIMQ-------------VHDE-----------LVF 888 Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + F + M + +PL E + + Sbjct: 889 EVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 926 >gi|167899173|ref|ZP_02486574.1| DNA polymerase I [Burkholderia pseudomallei 7894] Length = 625 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 51 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 100 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 101 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 158 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 159 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 208 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + L+QE Sbjct: 209 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTLEQEAY 268 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F L + T + T + VL + P + + Sbjct: 269 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 327 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N D T + TGR + QN+P + Sbjct: 328 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 385 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A G K+V AD + IE R++A ++ ++ L Sbjct: 386 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 421 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 422 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 476 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 477 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 527 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 528 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 569 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL V Sbjct: 570 -------------RARM--------IMQ-------------VHDE---LVLEV------- 585 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 586 -PEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 621 >gi|167743555|ref|ZP_02416329.1| DNA polymerase I [Burkholderia pseudomallei 14] Length = 619 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 45 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 94 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 95 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 152 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 153 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 202 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + L+QE Sbjct: 203 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 262 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F L + T + T + VL + P + + Sbjct: 263 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 321 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N D T + TGR + QN+P + Sbjct: 322 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 379 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A G K+V AD + IE R++A ++ ++ L Sbjct: 380 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 415 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 416 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 470 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 471 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 521 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 522 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 563 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL V Sbjct: 564 -------------RARM--------IMQ-------------VHDE---LVLEV------- 579 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 580 -PEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 615 >gi|167915856|ref|ZP_02502947.1| DNA polymerase I [Burkholderia pseudomallei 112] Length = 618 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 44 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 93 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 94 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 151 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 152 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 201 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + L+QE Sbjct: 202 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 261 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F L + T + T + VL + P + + Sbjct: 262 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 320 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N D T + TGR + QN+P + Sbjct: 321 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 378 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A G K+V AD + IE R++A ++ ++ L Sbjct: 379 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 414 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 415 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 469 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 470 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 520 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 521 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 562 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL V Sbjct: 563 -------------RARM--------IMQ-------------VHDE---LVLEV------- 578 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 579 -PEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 614 >gi|167850580|ref|ZP_02476088.1| DNA polymerase I [Burkholderia pseudomallei B7210] Length = 622 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H + Sbjct: 48 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVL 97 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L LE+ + + ++ VL + + TL+ + Sbjct: 98 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 155 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + EY D +T ++ Sbjct: 156 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 205 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D + + L+QE Sbjct: 206 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 265 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F L + T + T + VL + P + + Sbjct: 266 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 324 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L +N D T + TGR + QN+P + Sbjct: 325 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 382 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A G K+V AD + IE R++A ++ ++ L Sbjct: 383 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 418 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F V P +VT DQR I KV+ L Y + L + Sbjct: 419 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 473 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + + + E + G R ++ Sbjct: 474 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 524 Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + + Sbjct: 525 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 566 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R I+Q +VL V Sbjct: 567 -------------RARM--------IMQ-------------VHDE---LVLEV------- 582 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + + Sbjct: 583 -PEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 618 >gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34] gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Cupriavidus metallidurans CH34] Length = 934 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 95/704 (13%), Positives = 190/704 (26%), Gaps = 159/704 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + ID ET S + ++ + + H Sbjct: 353 IVAIDTETTSLDPML----------AQLVGISLSVEPGAAAYIPVAHRGPDVAGLENHGQ 402 Query: 51 ---PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-- 105 + + ++ LE+ + + ++ V + + T++ + Sbjct: 403 LSREYVLERMRGWLEDPARPKLGQHLKYDSHVFANH-GVALRGIA-HDTMLESYVLASYR 460 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 + ++ E L L + E + EY D Sbjct: 461 NHGMDSLAERL------------LSLKTITYEEVCGKGANQIGFDQIDLPRATEYAAEDA 508 Query: 166 TVTREIFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 VT + ++++P + + + Q I G +D + + + Sbjct: 509 DVTLRLHRKMQPQLEASEGLKYVYEQIEIPVSVVLQKIERNGVLIDADRLAAQSAELGLR 568 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLT 270 L++ + +++ LF + L + T +T + VL Sbjct: 569 MMDLERAAHDAAGQP-FNLGSPKQIGEILFNQMKLPVVKKTASGAPSTDEEVLQKLADDY 627 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 P + + R S+ + L + +N + T + TGR + QN+P Sbjct: 628 PLPKLLLDYR-GLSKLKSTYTDKLPKMVNPNTGRVHTSYGQATAVTGRLASTDPNLQNIP 686 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 + +R IA+ G +V AD + IE R++A Sbjct: 687 VRTEEGRR-------------------------IREAFIAAPGNVIVSADYSQIELRIMA 721 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++G++ L+AF GED++ T F V V+ +QR KV+ L Y A Sbjct: 722 HISGDENLLRAFANGEDIHRATAGEIFGVEREAVSSEQRRYAKVINFGLIYGMSA----- 776 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 + L + A + + ++ ++ E + G Sbjct: 777 FGLASNLGIEREAAKHYIDRYFMRYPGVAHYMEQTRQTAREQGYVETVFGRRLWLP---- 832 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + +A G A K + + Sbjct: 833 -DINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVQDW------------------- 872 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + R I+Q +VL Sbjct: 873 --LEGERLGTRQ------------------IMQ-------------VHDE---LVL---- 892 Query: 631 EIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P + L LM + + +PL AE + Sbjct: 893 ----EVPQAELELVRVKLPELMCAVAT--LNVPLVAEVGSGANW 930 >gi|163857439|ref|YP_001631736.1| DNA polymerase I [Bordetella petrii DSM 12804] gi|163261167|emb|CAP43469.1| DNA polymerase I [Bordetella petrii] Length = 948 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 104/702 (14%), Positives = 193/702 (27%), Gaps = 164/702 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53 + +D ET S ++ ++ + H + Sbjct: 375 VALDTETTSLDEM----------QASLVGISMALAPGVACYIPLAHRGPDSAEQLPKREV 424 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111 + ++ L++ + H++ ++ V + + + T++ A L Sbjct: 425 LERMRAWLQDPARPKLLHHAKYDAHVFAN-EGVALAGIQ-DDTMLQAYVLESHRGVGLND 482 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + L E + A G Y D T ++ Sbjct: 483 LAQRY------------LGRGGITYEELCGKGAKQIGFDEVAVEQAGHYACEDADFTLQL 530 Query: 172 FKRLEPL----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 L P E ++ + + G VD A + + E +L+Q Sbjct: 531 HHALRPRVAADAGLERIYQLEIQVSRVLTVVERNGVKVDAAELGRQSHRLGQEMLQLEQR 590 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277 L + ++L LF L + T +T + VL+ + P + Sbjct: 591 AYELAGQP-FNLNSPKQLGEILFGRMQLPVVRKTAGGAPSTDEEVLTRLAQDYPLPQVLL 649 Query: 278 NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R S+ + L +N+ GR+ A TGR + QN+P + + Sbjct: 650 EYR-GLSKLKSTYTDKLPRMINARTGRVHTHYSQA-AVVTGRLASSDPNLQNIPVRTEAG 707 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 VR +A G LV AD + IE R++A ++ + Sbjct: 708 RR-------------------------VREAFVAEHG-VLVSADYSQIELRIMAHVSDDA 741 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF G+D++ T + F VA +V DQR K + L Y G + Sbjct: 742 NLQQAFAAGKDIHRATASEIFGVALDEVGADQRRAAKAINFGLIYGMGV-----FGLASN 796 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L + A + + + ++ + + G + Sbjct: 797 LGITRDAAQAYIDRYFARYPGVAQYMEHTRQLARQQGYVETVFGRRLQL---------PD 847 Query: 517 VSEL----WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + +A G A K V + Sbjct: 848 IRAASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQDWLD------------------- 888 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 R T M+ + VHDE+ Sbjct: 889 --------------AERLATR--------------------MI----------MQVHDEL 904 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + E PD + + L LM +PL AE + Sbjct: 905 ILEVPDGELDAVRARLPELMCGVAR--LRVPLVAEVGVGPNW 944 >gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798] gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798] Length = 930 Score = 367 bits (942), Expect = 4e-99, Method: Composition-based stats. Identities = 108/710 (15%), Positives = 203/710 (28%), Gaps = 173/710 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDPVMPQVL 57 + D ET + ++ +F + L Sbjct: 340 YIAFDTETSGKNVMES----------DLVGVSFSPKAGIAYYVPINGFSDDGTKDLLDEL 389 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVG-EA 115 LE +AHN+ F+ L + + + T + A S LK + Sbjct: 390 SPLLE-GGPKKIAHNAKFDYMALYKH-GIRVSPL-YFDTSIAAFLLNETSVGLKDLAATR 446 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L + M LI K + Y D +T +F L Sbjct: 447 LGIQ---MTTIDSLI----------GKGKNQKTMLEVSVDECARYACADADMTFRLFTML 493 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E + E L + + G +D +L+ + + ++ ++ + Sbjct: 494 EKEIVERKLQDLFYTLEMPLVPVLADMEMTGVAIDADALKSLSTKLYEQIRDIESQIYEI 553 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + + ++L +LF + GL +T L + P + + R Sbjct: 554 AGY-EFNLKSPQQLSKFLFQDLGLKGIRKTSKGYSTDAATLEALSGQHPVIDLILSYRQ- 611 Query: 283 ASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ ++ L + S GRL ++ TGR + QN+P S +E Sbjct: 612 LTKLKDTYVDALPLMVSRSTGRLHTNFSQ-TSAVTGRLASSDPNLQNIPIRSSLGKE--- 667 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIA----------SEGKKLVVADLAGIEARVLAW 391 VR +A E L+ AD + IE RVLA Sbjct: 668 ----------------------VRKAFVAGSPEKNNAIFDEPSVLLSADYSQIELRVLAH 705 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 + E +AF D++ T +R F V V + R +GK + Sbjct: 706 VTDEPKLKEAFSRDIDIHALTASRLFGVPIESVDDNMRRMGKTINF-------------- 751 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ A + K + Sbjct: 752 GIIYGMSGFRL------------------------------ARDTGLEQREANLFVKRYM 781 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + RV + +L + E+ + P GR Sbjct: 782 DQFPRVKAYFEQLIKEAEK--------------------------KGYVETPLGRRRYLP 815 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625 D+ ++ R+ +Q ++ DI+ + M++ A ++ Sbjct: 816 DITSSNPQRREAARR---------AAINMPIQGMAADIIKQAMIDVHSALEREGIKAKMI 866 Query: 626 LTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674 L VHDE++ E ++ A+ + M++ +PL E + Sbjct: 867 LQVHDELLFEVAESQLDRAAEVIVREMSTAFD--LSVPLVVEAEYGPNWG 914 >gi|296123254|ref|YP_003631032.1| DNA polymerase I [Planctomyces limnophilus DSM 3776] gi|296015594|gb|ADG68833.1| DNA polymerase I [Planctomyces limnophilus DSM 3776] Length = 957 Score = 367 bits (942), Expect = 4e-99, Method: Composition-based stats. Identities = 112/710 (15%), Positives = 205/710 (28%), Gaps = 171/710 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF-----DDHPVELWD--------CVH 49 + ID ET L ++ +A + + Sbjct: 376 QICIDLETTGLDPLRD----------EIVGWAIAWAAQHGQPGRAVYLPVLGPPGSVLLD 425 Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL--- 105 + Q LK LEN ++ N F+ ++ + I + T+V Sbjct: 426 GTAVVQTLKPILENPQCQLINQNVKFDLLAMRK---VGIRPATIGLDTMVGDYLLDAGAR 482 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 L+ +G+ K L A K ++ EY D Sbjct: 483 SHNLEVLGQ------------KYLSAATIPISDLLGSGKNQKTMNQIEIERVAEYATEDA 530 Query: 166 TVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 + + +E E+ L + + +G VDV +Q + + Sbjct: 531 ELVVRMAPIIESQLQEAGLWKLYDEVEKPLIPVLADMEFKGIKVDVPELERQSQELSITL 590 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272 +L E+ L + +L+ LF E L ++ T+ +T Q VL L P Sbjct: 591 ARLMSEIHELAG-REFNIDSPMQLRKILFEELKLPVQKKTKTGPSTDQEVLELLAPLHPL 649 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ +R ++ L+ L ++ GR+ + + A+ TGR S QN+P Sbjct: 650 PAKITEHRH-LTKLKGTYLDALPLLVHPQSGRIHTSFNQVVAA-TGRLSSSDPNLQNIPI 707 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLA 390 + +R ++ +LV AD + IE R+LA Sbjct: 708 RTPEG-------------------------SRIRRAFVSCDPEWRLVCADYSQIELRMLA 742 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 + + + AFE GED++ A+ VA VT D R I K + Sbjct: 743 HFSQDPALVSAFEHGEDIHRLVAAQVHQVALEDVTSDMRRIAKAVN-------------- 788 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 G + + A + Sbjct: 789 FGVMYGQSPYGLSAA------------------------------LGISREAATTFIDEY 818 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 +++ V+ ++ + G A GR Sbjct: 819 FTRYAGVTTFM---ENVLDECLATGYARTIL-----------------------GRRRPI 852 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------I 624 V R N R ++Q + D++ M+ + Sbjct: 853 EGVRGPR-ERNRNRNMAERTGI------NTVIQGSAADLIKMAMIRVHHRLERENHPGQL 905 Query: 625 VLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +L +HDE+V E P +++ MT +PL+ + + Sbjct: 906 LLQIHDELVLEAPAHLAEELGALVSEEMTKALP--LDVPLEVDVAIGTNW 953 >gi|251791718|ref|YP_003006439.1| DNA polymerase I [Dickeya zeae Ech1591] gi|247540339|gb|ACT08960.1| DNA polymerase I [Dickeya zeae Ech1591] Length = 928 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 105/698 (15%), Positives = 197/698 (28%), Gaps = 155/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET LT ++ + HD + Sbjct: 353 SFDTETDGLDTLT----------ANLVGISLAIKPGEAAYLPLGHDYLDAPMQLDRDKVL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 VLK LE+ V + N F++ V+ +D+ T++ + L +V Sbjct: 403 AVLKPLLEDESVAKIGQNLKFDKGVMARY-GIDLRGIA-FDTMLESYV------LDSVAG 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S L + E ++ Y D VT + + Sbjct: 455 RHDMDSLSDRY---LQHKTITFEEIAGKGKNQLTFNQIPLEQAAVYAAEDADVTLRLHET 511 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L + L + + G +D + +Q + +L+ + Sbjct: 512 LWAKLEPQPELCKVFQNIDMPLVPVLSRMERTGVLIDTTILGEHSQELTQRLAELEVQAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 L + ++L T L+ + L + T +T + VL+ P + + Sbjct: 572 ELAG-EAFNLSSPKQLGTILYEKLQLPVIKKTPKGAPSTNEEVLAELALDHPLPKLILEH 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L + +N + T + TGR S QN+P + Sbjct: 631 R-ELAKLKSTYTDKLPQMINPLTKRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEQGRR- 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA EG ++ AD + IE R++A ++ + L Sbjct: 689 ------------------------IRQAFIAPEGYHILAADYSQIELRIMAHLSRDAGLL 724 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G D++ T A F + +VT +QR K + L Y A + L + Sbjct: 725 RAFSNGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFGLIYGMSA-----FGLSRQLAI 779 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 N E + + + ++ + G R SR Sbjct: 780 PRNEAQKYMNLYFERYPGVQEYMERTRQQAADQGYVSTLDGRRLYLPDIHSRNAMSR--- 836 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 +A G A K+ + + + + L+ ML Sbjct: 837 --KAAERAAINAPMQGTAADIIKKAMIAIDGWLQQEKPLVTML----------------- 877 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH----DEIVCE 635 +Q +V VH DE Sbjct: 878 ----------------------MQ-------------VHDE---LVFEVHHSVLDE---- 895 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + +LM +PL+ + + Sbjct: 896 -------ASAKIRNLMEGCMQ--LDVPLQVDIGTGSNW 924 >gi|87302855|ref|ZP_01085666.1| DNA polymerase I [Synechococcus sp. WH 5701] gi|87282738|gb|EAQ74696.1| DNA polymerase I [Synechococcus sp. WH 5701] Length = 997 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 109/731 (14%), Positives = 205/731 (28%), Gaps = 180/731 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD----------- 50 + +D ET S ++ + + + H Sbjct: 384 IALDTETTSLNPF----------QAELVGVGLCWGEGSSDLAYIPIGHQPPSPAPSADLL 433 Query: 51 --------------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 + L LE+ N+ ++R +L L + Sbjct: 434 TPASAEPPADSAVLSQQLPLDQVLTALAPWLESARHPKTLQNAKYDRLILLRH-GLSLE- 491 Query: 91 HRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 + TL+ L+ + E + L + + Sbjct: 492 GVVMDTLLADYLRDANAKHGLEVLAER---------------NFGFTPTSFSELVAKGET 536 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------------EQELWYLDQTINDRG 196 YC DV VT + L + E L + + G Sbjct: 537 FAAVPIAAAARYCAMDVHVTWRLTPLLRGQLQQLGEALPKLLDQVELPLEPVLARMEATG 596 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--L 254 +D TL++ + L+ + ++L LF GL + Sbjct: 597 IRIDKPYLATLSEELAGTLASLEAGAREAAGV-EFNLASPKQLGELLFETLGLERKKSRK 655 Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQF 310 T+ +T VL P V +R S+ ++ L + + GR+ Sbjct: 656 TKTGWSTDAAVLEKLAGDHPVVPLVLEHR-TLSKLKSTYVDALPALVEPETGRVHTDFNQ 714 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 + TGR S QN+P + S +R + Sbjct: 715 AV-TATGRLSSSNPNLQNIPIRTE-------------------------FSRRIRKAFLP 748 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 EG +L+ AD + IE R+L ++GE+ ++A+ G+D++ T + +VT D+R Sbjct: 749 QEGWQLISADYSQIELRILTHLSGEEVLVEAYANGDDVHALTARLL--LDKDEVTADERR 806 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 +GK + + Y GA Q+ A TG++ + + + + F + Sbjct: 807 LGKTINFGVIYGMGA---QRFARETGVSQS--QAKEFLSKYKQRYPKVFAFLELQERLAL 861 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + +G R P + Sbjct: 862 SRGYVETILG-------------------------------------------RRRPFAF 878 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 L P ++ + Q R +Q S DI+ Sbjct: 879 DPGGLGRLRGKPP-------EEIELEVARRAGMEAQQLRAAANAP------IQGSSADII 925 Query: 611 AEGMMNATK------AGYDIVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPL 663 M+ + ++L VHDE+V E P+ E + + +M + +PL Sbjct: 926 KLAMVQLDQQLRASGLPARLLLQVHDELVLEAAPEALEPVLAAVKQVMENAVRLL--VPL 983 Query: 664 KAEGYESKRYR 674 + + Sbjct: 984 LVDTGVGPNWM 994 >gi|297621859|ref|YP_003709996.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044] gi|297377160|gb|ADI38990.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044] Length = 883 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 108/701 (15%), Positives = 203/701 (28%), Gaps = 161/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---PVMPQVLK 58 + D ET + ++ F + L Sbjct: 314 KEICFDTETT----------HWHPLKAELVGIGFCIKQGAAWYIPMNGKLGLEKALKKLA 363 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA 115 EN+ + AH+ ++ +LK + + T++ + +L A+ Sbjct: 364 PLFENSRIGFYAHHLKYDLHILKNY-GISLANIS-FDTILASYILTPHLRQHSLDALTLE 421 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 GK I YC DV T + + Sbjct: 422 H--------FGKTKIPT----SDLIGKGKNQITMLEVPIEKVCAYCCEDVDYTYRLKQIF 469 Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 K + L + + G +D + TL + V+ + +L+ E+ ++ Sbjct: 470 ASELKKRKLEPLLFDLELPLLKVLSKMEREGIFLDAPILKTLEKAVNTDLQRLENEIHAI 529 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMR 282 + + ++L LF + + T +T VL + + A ++ R Sbjct: 530 -ADEPFNLKSPKQLSGILFEKMKIPPPKKTATGYSTSAEVLETLQNEYAIAKKMLEFR-S 587 Query: 283 ASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + TL + +N GR+ T A+ TGR S Q +P + E Sbjct: 588 LEKLRSSYIETLPKEINPKTGRIHPTFNQSVAA-TGRLSCQDPNLQQIPIRTPLGRE--- 643 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLK 400 VR + G + AD + IE R+LA + + + Sbjct: 644 ----------------------VRKAFRPEKQGWSYLSADYSQIELRLLAHFSEDPTLIS 681 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE ED++ T A N+ QVTK+QR Sbjct: 682 AFENNEDIHTHTAATVLNIPLEQVTKEQRRQA---------------------------- 713 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A NF + + E K + Q++ RV + Sbjct: 714 ----------------KAVNFGILYGQQAWGLSKELGISLEEASAFIKTYFQRYQRVKDF 757 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + E+T + G+A+ GR ++ + Sbjct: 758 ---VESCKEKTRKTGRAMTII-----------------------GRERPIPEIDSKNP-- 789 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVC 634 R +Q + D++ + M+ + ++L +HDE++ Sbjct: 790 -QIRGAAERLA------VNTPLQGTAADLIKKAMIVIDEKLMRGQHLGFMILQIHDELIF 842 Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674 E PD + L M + +PL + K ++ Sbjct: 843 EIPDFEITAIEQLVISSMEGV--YQLRVPLTVDVSIGKNWK 881 >gi|262364151|gb|ACY60708.1| DNA polymerase I [Yersinia pestis D182038] Length = 750 Score = 367 bits (941), Expect = 5e-99, Method: Composition-based stats. Identities = 104/699 (14%), Positives = 198/699 (28%), Gaps = 156/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET L+ +I +F HD + Sbjct: 174 AFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVL 223 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ V N F++++L +D+ T++ + + + Sbjct: 224 ATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIA-FDTMLESYVLDSVAGRHDMDS 281 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 282 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 329 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + I G +D + ++ + + +L++ Sbjct: 330 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 389 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 390 QAHEL-AEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 448 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + + TGR S QN+P + Sbjct: 449 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 506 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA +G ++ AD + IE R++A ++ + Sbjct: 507 GRR-------------------------IRQAFIAPKGYCIMAADYSQIELRIMAHLSQD 541 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF G+D++ T A F +VT +QR K + L Y A Sbjct: 542 NGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSA-----FGLAR 596 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + + E + + ++ E G R + Sbjct: 597 QLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANR 656 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + G A KR + + + + ++ + Sbjct: 657 R-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRV------------- 698 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 I+Q +V VH Sbjct: 699 -------------------------IMQ-------------VHDE---LVFEVH------ 711 Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ +A + LM + A +PLK + + Sbjct: 712 --ESVLQSAEQKIRELMEQSMQLA--VPLKVDVGVGANW 746 >gi|217977571|ref|YP_002361718.1| DNA polymerase I [Methylocella silvestris BL2] gi|217502947|gb|ACK50356.1| DNA polymerase I [Methylocella silvestris BL2] Length = 1013 Score = 367 bits (941), Expect = 5e-99, Method: Composition-based stats. Identities = 106/711 (14%), Positives = 192/711 (27%), Gaps = 164/711 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + ID ET S + ++ + H Sbjct: 423 IIAIDTETSSLDPM----------QAELVGLSLCLAPGRAAYVPLRHRGEGAGDLFGGAD 472 Query: 51 --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 LK LE DV +A N+ F++ VL I + TL+L+ Sbjct: 473 LVPGQLDSDETLARLKPMLEAPDVLKIAQNAKFDQLVLAQ---RGIRLAPVDDTLLLSYV 529 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + + E G I R A E Sbjct: 530 LDAGRTDHGMDVLAEKY--------FGHRPIQFGA----VAGSGRTFIGFARVALDKATE 577 Query: 160 YCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D VT +++ L+P + E+ + + RG +D A+ L+ Sbjct: 578 YSAEDADVTLRLWRVLKPRLAAERMSAVYETLERPMVETLARMERRGVSIDRAILSRLSG 637 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSS 265 + +L+ + L + ++L LF + GL T +T VL Sbjct: 638 EFAQDMARLEAVIFELAG-ESFNLGSPKQLGDILFGKMGLAGARKTATGAWSTAAGVLDD 696 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + + + S+ + L +N + T L A+ TGR S Sbjct: 697 LAEQGVPLAARILDWRQLSKLKSTYTDALPSYVNPETGRVHTSYALAATTTGRLSSSEPN 756 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P + + + +R IA G+KL+ AD + IE Sbjct: 757 LQNIPVRNEAGRK-------------------------IRKAFIAPPGRKLISADYSQIE 791 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A AF D++ T + F V + + R K + + Y A Sbjct: 792 LRLLAHIADISQLRAAFAENLDIHAMTASEMFGVPVEGMPPEVRRRAKAINFGIIYGISA 851 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 L + E + + ++ E+ G C Sbjct: 852 -----FGLANQLAIPREEAGAYIKRYFERFPGIRAYMDATKQFARENGYVTTIFGRKCHY 906 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + + +A G A +R Sbjct: 907 PRIT--ASNPSERAFN---ERAAINAPIQGSAADIIRR---------------------- 939 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 + L + +S + ++ Sbjct: 940 -------------AMVRMDEALEKA-------------GLSA----QMLLQVHDE----- 964 Query: 626 LTVHDEIVCETPDTDEFN-ASMLYHLMTSNPS--WAKGLPLKAEGYESKRY 673 +V E PD + ++ +M P +PL+ + ++ + Sbjct: 965 ------LVFEAPDEEIDATIDVVRKVMVDAPHPFLQLAVPLQVDAKAAQNW 1009 >gi|310765929|gb|ADP10879.1| DNA polymerase I [Erwinia sp. Ejp617] Length = 929 Score = 367 bits (941), Expect = 5e-99, Method: Composition-based stats. Identities = 109/701 (15%), Positives = 203/701 (28%), Gaps = 160/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S L+ +I +F HD + Sbjct: 353 AFDLETDSLDTLS----------ANIIGLSFATAPGEAAYLPVAHDYLDAPEQLDRSDVL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ V N F+R VLK ++++ R T++ + + + Sbjct: 403 ARLKPLLEDPQAQKVGQNLKFDRGVLKRY-DIELQGIR-FDTMLESYALNSVAGRHDMDT 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L + E ++ A Y D VT ++ Sbjct: 461 LASR------------WLNHKTVTFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P KEQ L + I G + + T +Q + +L+ Sbjct: 509 HVKMWPELEKEQGPKNVFEHVEMPLVPVISRIERNGVLIAPGILATHSQELGSRLAELEL 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+T LF + G+ T +T + VL+ P + Sbjct: 569 KAHELAG-EPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R ++ + L +N T + TGR S QN+P + Sbjct: 628 LEHR-GLAKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEG 686 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA +G ++V AD + IE R++A ++ ++ Sbjct: 687 RR-------------------------IRQAFIAPQGHRIVAADYSQIELRIMAHLSQDK 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF + +D++ T A F V+ +V+ +QR K + L Y A + Sbjct: 722 GLLSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSA-----FGLSRQ 776 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 LN+ + E + + +E + G R Sbjct: 777 LNIGAGEAKKYMDLYFERYPGVLQYMESTRELAAQKGYVSTLDGR---------RLYLPD 827 Query: 517 VSE----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + +A G A KR + + + + + + + Sbjct: 828 IKASNAMRRKAAERAAINAPMQGTAADIIKRAMIAVDRWLEQQPSPEVKM---------- 877 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 I+Q +V VH Sbjct: 878 ----------------------------IMQ-------------VHDE---LVFEVH--- 890 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 D E + + LM + +PL+ + + Sbjct: 891 ----ADAVEAACAQIRALMEGSMK--LDVPLRVDIGVGDNW 925 >gi|227113276|ref|ZP_03826932.1| DNA polymerase I [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 929 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 104/697 (14%), Positives = 200/697 (28%), Gaps = 153/697 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54 D ET LT +I +F HD + Sbjct: 354 AFDTETDGLDTLT----------ANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRTKVL 403 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 + K LE+ + + N F++ V++ ++D+ T++ + + + Sbjct: 404 ALFKPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIA-FDTMLESYVLDSVAGRHDMDS 461 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT + Sbjct: 462 LAERY------------LSHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLHL 509 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++L L + I G +D A+ ++ + + +L+ Sbjct: 510 HQKLWGKLQPHADLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKELTIRLAELET 569 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L +T + VL+ P + Sbjct: 570 QAYELAG-EEFNLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPLPKLI 628 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N + T + TGR S QN+P + Sbjct: 629 LEYR-GLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEG 687 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA +G +V AD + IE R++A ++G++ Sbjct: 688 RR-------------------------IRQAFIAPKGYSIVAADYSQIELRIMAHLSGDK 722 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G D++ T + F +A +VT +QR K + L Y A + Sbjct: 723 GLLNAFANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSA-----FGLSRQ 777 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 LN+ N E + +++ ++ EH G R +R Sbjct: 778 LNIPRSESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMAR 837 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 +A G A K+ + + + Sbjct: 838 -----KGAERAAINAPMQGTAADIIKKAMIAIDDWLQKD--------------------- 871 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 K+ M +V +HD ++ Sbjct: 872 -----------------TPKV-------------KMIM-QVHDE---LVFEIHDSVI--- 894 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + S + LM +PL+ + + Sbjct: 895 ----EESISKIKALMEGCMQ--LNVPLQVDIGTGMNW 925 >gi|110677750|ref|YP_680757.1| DNA polymerase I [Roseobacter denitrificans OCh 114] gi|109453866|gb|ABG30071.1| DNA polymerase I [Roseobacter denitrificans OCh 114] Length = 933 Score = 366 bits (940), Expect = 6e-99, Method: Composition-based stats. Identities = 93/711 (13%), Positives = 189/711 (26%), Gaps = 168/711 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET ++T ++ + + +H Sbjct: 347 YVAVDTETTGLNEMT----------AELVGISLCVEPGTACYIPLIHKAAGSDDLFGSDD 396 Query: 51 --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 ++LK LE+ + + N ++ V + I + T++++ + Sbjct: 397 LAEGQMPLETALEMLKPVLEDESILKIGQNMKYDAKVFAQ---VGITVAPIDDTMLMSYA 453 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + A+ E L + + Sbjct: 454 MHGGLHGHGMDALSERY------------LGHTPLPIKPLLGSGKSAITFDKVPLSEAVP 501 Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D VT ++++ +P + E+ + + + G VD ++ Sbjct: 502 YAAEDADVTLRLWQQFKPALHRAQVTKVYETLERPMVAVLADMERAGIKVDRDTLSRMSN 561 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265 + L+ E+ +L + ++L LF E GL +T T VL Sbjct: 562 AFSQKMAALEDEVYTLVGRK-FNVGSPKQLGEILFDEMGLQGGKKGKTGAYATGADVLED 620 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 ++ + R S+ + L + +N D T + + TGR + Sbjct: 621 LATEHELPRRILDWRQ-LSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTGRLASTDPN 679 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S +R +A EGK LV D + IE Sbjct: 680 LQNIPIRSEEGRR-------------------------IREAFVAEEGKTLVALDYSQIE 714 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A AF+ G+D++ T + F+V ++T + R K + + Y Sbjct: 715 LRILAHIADIPALKTAFDDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISG 774 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 L + + E + + + EH + G Sbjct: 775 -----FGLARNLRIPRSEAQGFIDRYFERFPGIRAYMDDTKAFAKEHGYVETLFGRRIHT 829 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + + A I Sbjct: 830 ---------PNIGAKGPQAGFAARAAINAPI----------------------------- 851 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 T + R ++ A+ ++ Sbjct: 852 --------------QGTAADVIRRAMIRMPAAI--------AELPAKMLLQVH------- 882 Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 DE++ E + +M S P + L + + + Sbjct: 883 ----DELLFEVDQGAQDALIEAARSVMESAADPVVHLDVKLTVDAGQGPNW 929 >gi|317474651|ref|ZP_07933925.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA] gi|316909332|gb|EFV31012.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA] Length = 952 Score = 366 bits (940), Expect = 6e-99, Method: Composition-based stats. Identities = 101/694 (14%), Positives = 205/694 (29%), Gaps = 148/694 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58 L ID ET + + ++ +F ++ + + + Sbjct: 380 ILSIDTETTGTEPM----------EAELVGMSFSNAENRAYYVPVPANRDEALKIVNEFR 429 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 EN + V N ++ VL+ + + + T++ + + E Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVK-GKLFDTMLAHYVLQPELRHNMDYLAEIY 487 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + ELI K Y D VT ++ LE Sbjct: 488 --LRYRTIHIDELIG---------SRGKNQKSMRDLPPEDVYRYACEDADVTLKLKNVLE 536 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + I G +D ++ + ++++E+ +L Sbjct: 537 KELKKQSAEHLFYEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYALA 596 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ LF + + T+T T + VL S + ++ R Sbjct: 597 NGETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILEYR- 655 Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N GR+ + + TGR S QN+P +E Sbjct: 656 GLKKLLSTYIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIPIRDEDGKE-- 712 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I +G + AD + IE R++A ++ ++ + Sbjct: 713 -----------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSQDRNMID 749 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +G D++ T A+ + V ++VT D R K + Y +N++ Sbjct: 750 AFLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIYGISV-----FGLAERMNVS 804 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + E + + + + E+ + +R +++ V Sbjct: 805 RQEAKELIDGYFETYPQIKEYMDKSIQVARENGYVETIFHR--KRFLPDINSRNAVVRGY 862 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + G A K SL+Y+ + +N Sbjct: 863 ---AERNAINAPIQGSAADIIKV---------------------AMSLIYQRIQSNN--- 895 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 L M+ L VHDE+ P+ + Sbjct: 896 -----------------------------LKAKMI----------LQVHDELNFSVPEAE 916 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PLKA+ K + Sbjct: 917 KEIIQKIVIEEMERA--YRMLVPLKADFGWGKNW 948 >gi|163733043|ref|ZP_02140487.1| DNA polymerase I [Roseobacter litoralis Och 149] gi|161393578|gb|EDQ17903.1| DNA polymerase I [Roseobacter litoralis Och 149] Length = 933 Score = 366 bits (940), Expect = 6e-99, Method: Composition-based stats. Identities = 95/711 (13%), Positives = 189/711 (26%), Gaps = 168/711 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET D+T ++ + + +H Sbjct: 347 YVAVDTETTGLNDMT----------ADLVGVSLCVEPGKACYIPLIHKAASSDDLFGSDD 396 Query: 51 --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 ++LK LE+ + + N ++ + + I + T++++ + Sbjct: 397 LAEGQMPLETALEMLKPVLEDESILKIGQNMKYDAKIFAQ---VGITVAPIDDTMLMSYA 453 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + A+ E L + + Sbjct: 454 MHGGLHGHGMDALSERY------------LGHTPLPIKPLLGSGKSAITFDKVPLNDAVP 501 Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D VT ++++ +P + E+ + + + G VD ++ Sbjct: 502 YAAEDADVTLRLWQQFKPALHRAQVTRVYETLERPMVAVLADMERAGIKVDRDTLSRMSN 561 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265 + L+ E+ +L + ++L LF E GL +T T VL Sbjct: 562 AFSQKMAALEDEIYTLVGRK-FNVGSPKQLGEILFDEMGLQGGKKGKTGAYATGADVLED 620 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 ++ + R S+ + L + +N D T + + TGR + Sbjct: 621 LATEHELPRRILDWRQ-LSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTGRLASTDPN 679 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S +R +A EGK LV D + IE Sbjct: 680 LQNIPIRSEEGRR-------------------------IREAFVAEEGKTLVALDYSQIE 714 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A AF+ G+D++ T + F+V ++T + R K + + Y Sbjct: 715 LRILAHIADIPALKAAFDDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISG 774 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 L + + E + + + EH + G Sbjct: 775 -----FGLARNLRIPRSEAQGFIDRYFERFPGIRTYMDDTKAFAKEHGYVETLFGRRIHT 829 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + + A I Sbjct: 830 ---------PNIGAKGPQAGFAARAAINAPI----------------------------- 851 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 T + R D+ A+ ++ Sbjct: 852 --------------QGTAADVIRRAMIRMPAAIV--------DLPAKMLLQVH------- 882 Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 DE++ E + +M S P + L + E + Sbjct: 883 ----DELLFEVDQGSQGALIDAARSVMESAADPVVHLDVKLTVDAGEGPNW 929 >gi|114330791|ref|YP_747013.1| DNA polymerase I [Nitrosomonas eutropha C91] gi|114307805|gb|ABI59048.1| DNA polymerase I [Nitrosomonas eutropha C91] Length = 906 Score = 366 bits (939), Expect = 7e-99, Method: Composition-based stats. Identities = 104/696 (14%), Positives = 206/696 (29%), Gaps = 150/696 (21%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53 + ID ET S + + ++ + + H + Sbjct: 331 VSIDTETTSLNPM----------EAELVGLSLCTEPGHAAYIPLAHHYQGVPSQLNREQV 380 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 Q LK LEN+D+ V N ++R V + + TL+ + + Sbjct: 381 LQRLKPWLENSDIPKVGQNLKYDRHVFANH-GVMLNGIA-HDTLLQSYVLESHLSHDLDS 438 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + + + + + + G Y D + + Sbjct: 439 LARRHLDIQTISYDD----------VTGKGAKRIGFEQVEIQQAGIYAAEDADIPLRLHH 488 Query: 174 RLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P+ E L + I G +D L + + + L+Q+ Sbjct: 489 FLYPIISKDAHLGHIYQQIEMPLLEVLFRIERNGVLLDTDLLREQSGELARQLVILEQQA 548 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 SL + ++++ LF + L + T +T + VL P + + Sbjct: 549 HSLAGRA-FNLNSTKQIQEILFGQHKLPVIKKTPKGAPSTDEEVLQQLALDYPLPKILLD 607 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ ++ L + +N T + TGR + QN+P + Sbjct: 608 YR-SLAKLRSTYIDKLPQMVNRQTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTPEGRR 666 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA G ++ AD + IE R++A ++ + Sbjct: 667 -------------------------IREAFIAPSGWYIISADYSQIELRIMAHISQDAGL 701 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++AF G+D++ T A F ++ QV +QR KV+ L Y + T L Sbjct: 702 IRAFLGGQDIHSATAAEVFGISVGQVNAEQRRYAKVINFGLIYGMS-----EFGLATQLG 756 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++ A + + ++ + +E ++ + +G + Q + R+ Sbjct: 757 IDRSAARAFIDRYFARYPGVADYMQRTRELARQNGYVETVLGRRLQLPDIRSSQHNRRM- 815 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 +A G A K + + Sbjct: 816 ----GAERAAINAPMQGTAADIIKLAMISVHQW--------------------------- 844 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 L + +Q+ M +VL E++ + Sbjct: 845 ------------------LVKAPLQS------KLIM-QVHDE---LVL----EVI----E 868 Query: 639 TDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + F L LM + +PLK E K + Sbjct: 869 DELFVVKENLIILMENTFK--LDVPLKVEVGVGKNW 902 >gi|295096879|emb|CBK85969.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 591 Score = 366 bits (939), Expect = 8e-99, Method: Composition-based stats. Identities = 206/548 (37%), Positives = 296/548 (54%), Gaps = 16/548 (2%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L+ D ET I + G YAE V V+LFA+ D PV +WD +P L++A+ Sbjct: 3 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPGRLQKAI 61 Query: 62 ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + D + HNS+F+RTVL+ L + RW T+V A ++GLP AL A+ E L + Sbjct: 62 ADPDTLLYFHNSHFDRTVLRHAIPRLAPDVTRWRDTMVQALAHGLPGALGALCEVLGVPQ 121 Query: 121 Q--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K +EGK LI FCK R H E WR F Y D+ RE+ KRL Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVHKRLPK 181 Query: 178 LSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + K E LW+ DQ INDRG C+DV LA + VD E+ +L + + +T G V ++ Sbjct: 182 WNYKGTELALWHRDQQINDRGVCMDVQLAQAAIEAVDQEQKRLAKRTQVMTDGEVQAATQ 241 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + L + G+ L D+ +T +R ++ L ++ R++AS ++ K +L+ Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRMAD-PDLPSAVKELLAIRLQASTTSTSKYKSLM 300 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353 + ++SDGRLRGTLQF GASRTGRW+G +F PQNLPRPS +++D+ I L Sbjct: 301 KGVSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLEQDQIDEGIEALKAGCADLLF 360 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDL 408 + +++ S +R C++A EGKKLVV+DL+ IE R LAW+AGEQWKL AF DL Sbjct: 361 DNIMELTSSALRGCIMAPEGKKLVVSDLSNIEGRKLAWLAGEQWKLHAFREYDEGTGPDL 420 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 Y YAR+FN++P V K QR IGKVMEL LG+ GG AF A GL+L+ A+ Sbjct: 421 YKLAYARAFNISPDDVDKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALP 480 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 N + +A+N+ + + + + AC+ +K+ WR+ H + W EL + Sbjct: 481 NIPRDVIREAKNWYDESVKRKATYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTV 539 Query: 529 EQTIENGK 536 I Sbjct: 540 RAAIATPT 547 >gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16] gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16] Length = 931 Score = 365 bits (938), Expect = 9e-99, Method: Composition-based stats. Identities = 93/589 (15%), Positives = 175/589 (29%), Gaps = 85/589 (14%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 D ET S + ++ +F ++ HD Sbjct: 352 DVFAFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRD 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALK 110 + LK LE+ V N ++ +VL N+++ + T++ + Sbjct: 402 WVLAQLKPILEDDTQAKVGQNLKYDASVLARY-NIEMKGIK-HDTMLASYVYNSVGGKHD 459 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 AL+ E + ++ Y D VT Sbjct: 460 MDSLALRFLQHS----------CISFEQIAGKGKKQLTFNQIELDQASPYAAEDADVTLR 509 Query: 171 IFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + RL K++ L + I G +D +Q + +L+ Sbjct: 510 LHNRLMANIEKDEQLKAIYEEIEVPLVPVLSRIERTGVLIDDMKLAAQSQEIAQRLDELE 569 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQ 275 Q+ + + ++L+ LF + GL T +T + VL P Sbjct: 570 QKAYEI-AEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKL 628 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R ++ + L + +N + T + TGR S QN+P + Sbjct: 629 ILEYR-GLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNDE 687 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA G K++ D + IE R++A ++G+ Sbjct: 688 GRR-------------------------IRQAFIAPHGYKIMAVDYSQIELRIMAHLSGD 722 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF+ G+D++ T A QV+ +QR K + L Y A Sbjct: 723 KALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSA-----FGLAK 777 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + N+ E + + + E + G + R Sbjct: 778 QLGIPRGEAQDYMNTYFERYPGVMQYMEDTRSAAAEQGYVETIFGRRLHLPEIKSRNGMR 837 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 R +A G A K+ + + + + + + L Sbjct: 838 R-----KAAERAAINAPMQGTAADIIKKAMLLVDEWIQAEGDGRVKLLM 881 >gi|238790750|ref|ZP_04634510.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641] gi|238721148|gb|EEQ12828.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641] Length = 932 Score = 365 bits (938), Expect = 9e-99, Method: Composition-based stats. Identities = 106/699 (15%), Positives = 202/699 (28%), Gaps = 156/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET L+ +I +F HD + Sbjct: 356 AFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRDWVL 405 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL---PSALK 110 LK LE+ V N F++++L DI + T++ + + Sbjct: 406 AQLKPLLEDDKALKVGQNLKFDQSMLARY---DINLRGIAFDTMLESYVLNSVAGRHDMD 462 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 ++ E L + E ++ A G Y D VT + Sbjct: 463 SLAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQ 510 Query: 171 IFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + L P E L + I G +D + ++ + + +L+ Sbjct: 511 LHLVLWPKLQQSEGLKQVFQEIEMPLLPVLSRIERTGVLIDQNILAAHSKELTIRLDELE 570 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 ++ L + ++L+ L+ + L + T +T + VL+ P Sbjct: 571 KQAHEL-AEEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKV 629 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + R ++ + L ++ GR+ + + TGR S QN+P + Sbjct: 630 ILEYR-GLAKLKSTYTDKLPLMISPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNE 687 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA +G +++ AD + IE R++A ++ Sbjct: 688 EGRR-------------------------IRQAFIAPKGYRIMAADYSQIELRIMAHLSQ 722 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + +VT +QR K + L Y A Sbjct: 723 DKGLLAAFAAGKDIHRATAAEVFGLPLEKVTHEQRRSAKAINFGLIYGMSA-----FGLA 777 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 LN+ + E + + ++ + G + R Sbjct: 778 RQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPEIHSRNAT 837 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R + G A KR + + + + + + Sbjct: 838 RR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQEPEPKVRV------------ 880 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 I+Q +V VH E V Sbjct: 881 --------------------------IMQ-------------VHDE---LVFEVH-ESVL 897 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+ + + LM + A +PLK + + Sbjct: 898 ESTE------QKVRELMEQSMQLA--VPLKVDIGVGDNW 928 >gi|319788387|ref|YP_004147862.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1] gi|317466899|gb|ADV28631.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1] Length = 927 Score = 365 bits (938), Expect = 9e-99, Method: Composition-based stats. Identities = 101/699 (14%), Positives = 187/699 (26%), Gaps = 157/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 +D ET S + ++ +F + HD Sbjct: 352 ALDTETDSLDPMR----------ARLVGLSFAAEPGRAAYLPLGHDYPGAPAQLGYEQAL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 +L+ L + V + + ++ VL+ + + + TL+ + + + Sbjct: 402 DLLRPLLADPAVRKIGQHGKYDLHVLRRH-GVAVAGYA-DDTLLESFVLDSGNARHDMDS 459 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L K E R P + A Y D +T + Sbjct: 460 LALRH------------LGYTTVKYEDICGKGVRQIPFSQCALDDATRYAAEDADITLRL 507 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E L + + I G VD+ + + + Sbjct: 508 HRVLSARLQAEPQLQAVYRDIEMPLVQVLERIEANGVLVDMDELRRQGADLSRRMLEAQE 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 +L + ++L LF E L +T + L + L + Sbjct: 568 RATALAG-RSFNLDSPKQLCALLFDELKLPALVKTPKGQPSTNEEALEAIADLHELPRII 626 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L E +N + GR+ + GA+ TGR S QN+P + Sbjct: 627 LEYR-GLAKLRSTYTDKLPEMVNPETGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTDD 684 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G+KLV D + IE R++A ++ + Sbjct: 685 GRR-------------------------IRRAFVAPPGRKLVACDYSQIELRIMAHLSQD 719 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF +G D++ T A F +VT ++R K + L Y GA Sbjct: 720 PGLLGAFASGADIHRATAAEVFGRPLEEVTVNERRAAKAINFGLMYGMGA-----FGLAR 774 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L ++ + ++ +E E + G R Sbjct: 775 QLGIDRGQAQDYIALYFSRYPGVRDYMERTREQARERGYVETVFGRRLHLEYINARNAAQ 834 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R +A G A KR + + D Sbjct: 835 R-----AGAERAAINAPMQGTAADIIKRAMIAVDAWIAD--------------------- 868 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R ++ +V E Sbjct: 869 ----------HAQRARM---------------------LLQVHDE-----------LVFE 886 Query: 636 TPDTDE-FNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + S + LM++ +PL + + Sbjct: 887 ADEEFVPELVSRVPELMSAAGD--LSVPLVVDTGIGNNW 923 >gi|218131732|ref|ZP_03460536.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697] gi|217986035|gb|EEC52374.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697] Length = 952 Score = 365 bits (938), Expect = 9e-99, Method: Composition-based stats. Identities = 101/694 (14%), Positives = 205/694 (29%), Gaps = 148/694 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58 L ID ET + + ++ +F ++ + + + Sbjct: 380 ILSIDTETTGTEPM----------EAELVGMSFSNAENRAYYVPVPANRDEALKIVNEFR 429 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 EN + V N ++ VL+ + + + T++ + + E Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVK-GKLFDTMLAHYVLQPELRHNMDYLAEIY 487 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + ELI K Y D VT ++ LE Sbjct: 488 --LRYRTIHIDELIG---------SRGKNQKSMRDLPPEDVYRYACEDADVTLKLKNVLE 536 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + I G +D ++ + ++++E+ +L Sbjct: 537 KELKKQSAEHLFYEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYALA 596 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ LF + + T+T T + VL S + ++ R Sbjct: 597 NGETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILEYR- 655 Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N GR+ + + TGR S QN+P +E Sbjct: 656 GLKKLLSTYIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIPIRDEDGKE-- 712 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I +G + AD + IE R++A ++ ++ + Sbjct: 713 -----------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSQDRNMID 749 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +G D++ T A+ + V ++VT D R K + Y +N++ Sbjct: 750 AFLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIYGISV-----FGLAERMNVS 804 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + E + + + + E+ + +R +++ V Sbjct: 805 RQEAKELIDGYFETYPQIKEYMDKSIQVARENGYVETIFHR--KRFLPDINSRNAVVRGY 862 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + G A K SL+Y+ + +N Sbjct: 863 ---AERNAINAPIQGSAADIIKV---------------------AMSLIYQRIQSNN--- 895 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 L M+ L VHDE+ P+ + Sbjct: 896 -----------------------------LKAKMI----------LQVHDELNFSVPEAE 916 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PLKA+ K + Sbjct: 917 KEIIQKIVIEEMERA--YRMLVPLKADFGWGKNW 948 >gi|270295031|ref|ZP_06201232.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274278|gb|EFA20139.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 951 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 95/697 (13%), Positives = 197/697 (28%), Gaps = 155/697 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQ---VLK 58 L ID ET + D ++ +F ++ + + + Sbjct: 380 ILSIDTETTGTEPM----------DAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFR 429 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 EN V N ++ +L+ + + + T++ + + E Sbjct: 430 PLFENEKSMKVGQNIKYDMIILQNY-GVQVK-GKLFDTMLAHYVLQPELRHNMDYLAEIY 487 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + ELI K Y D VT ++ LE Sbjct: 488 LH--YQTIHIDELIG---------ARGKNQKNMRDLPPEDVYRYACEDADVTLKLKNVLE 536 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + I G +D +Q V ++++E+ + Sbjct: 537 KELKEQGAEHLFYEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMA 596 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF + + T+T T + VL S + ++ R Sbjct: 597 G-ETFNISSAKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLQSYRSKHDIIGKILEYR- 654 Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N GR+ + + TGR S QN+P +E Sbjct: 655 GLKKLLSTYIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIPIRDEDGKE-- 711 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I G + AD + IE R++A ++ ++ + Sbjct: 712 -----------------------IRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMID 748 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +G D++ T A+ + + VT D R K + Y + ++ Sbjct: 749 AFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISV-----FGLAERMGVS 803 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + E + + + + E+ + Sbjct: 804 RQEAKELIDGYFETYPQVKEYMDKSIQVARENGYVETIF--------------------- 842 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 ++R +P + + +G Y + + + Sbjct: 843 --------------------HRKRFLPDINSR-----------NGVVRGYAERNAINAPI 871 Query: 581 NTTTRQLTREY---TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 + + + Y N L M+ L VHDE+ P Sbjct: 872 QGSAADIIKVAMAHIYQRFQAYN---------LKAKMI----------LQVHDELNFSVP 912 Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + ++ + M + +PLKA+ + Sbjct: 913 EAEKELVQKIVIEEMEQA--YHMHVPLKADCGWGNNW 947 >gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA] gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA] Length = 971 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 96/695 (13%), Positives = 200/695 (28%), Gaps = 148/695 (21%) Query: 2 ATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQV 56 + +D ET +T ++ +F + ++ D + Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRTEAQKIVNE 447 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE 114 + A E V N ++ VL ++ T+V + + E Sbjct: 448 FRPAFEKEGALKVGQNIKYDMLVLGNY-GTEVR-GPLFDTMVAHYVLQPELRHNMDYLAE 505 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + +ELI K + +Y D VT ++ Sbjct: 506 IYLH--YQTIHIEELIG---------PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNI 554 Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 LE E L + I G VD ++ ++++E+ Sbjct: 555 LEQELKTNDAEKLFYEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQ 614 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L + +++ LF + + T+T T + VL S + ++ + Sbjct: 615 LAGTD-FNIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEH 673 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + ++ L +N + T + TGR S QN+P + +E Sbjct: 674 R-GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKE- 731 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I +G + AD + IE R++A ++G+ + Sbjct: 732 ------------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMI 767 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ G+D++ T A+ + ++ +VT++QR+ K + Y +N+ Sbjct: 768 EAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISV-----FGLAERMNV 822 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + E + + + + + G +R ++S V Sbjct: 823 DRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFGR--KRYLPDINSRNSVVRG 880 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G A Sbjct: 881 Y---AERNAINAPIQGSAADII-------------------------------------- 899 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + Y +ENI ++L VHDE+ Sbjct: 900 ------KAAMVRIYQRFQSENI-------------------KSKMILQVHDELNFSVLPE 934 Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + M + + +PL+A+ + Sbjct: 935 EKEKVQKIVIEEMENA--YHMQVPLRADCGWGSNW 967 >gi|294339888|emb|CAZ88251.1| DNA polymerase I (POL I) [Thiomonas sp. 3As] Length = 922 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 108/702 (15%), Positives = 204/702 (29%), Gaps = 165/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54 ID ET S + +I + H + Sbjct: 349 AIDTETDSLDPMR----------ARLIGISLSVTPGEAAYLPLAHAYPGAPEQLPMAEVL 398 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112 + L+ LEN D + N+ ++R V + I + TL+ + P +L ++ Sbjct: 399 ERLRPWLENADKPKLGQNAKYDRHVFANA-GVTIRGYA-HDTLLESYVIEAHKPHSLDSL 456 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + E + + A + Y D +T ++ Sbjct: 457 VSRHLGRDDTLS-----------YEQVCGKGAKAITFDQVALDVATRYSGEDADLTLQVH 505 Query: 173 KRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 +RL P + ++ + Q I G VD L + + + L+ + Sbjct: 506 QRLWPQIQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLLRAQSGELGAKMQTLEAQA 565 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278 L G + +++ LF L ++ T +T + VL + P + + Sbjct: 566 FELAGGA-FNLGSPKQIGEILFDRLQLPVQKKTASGAPSTDEEVLEKLAEDYPLPRVILD 624 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R S+ L + +N D T + TGR + QN+P + Sbjct: 625 HR-SLSKLKSTYTEKLPQMINPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR 683 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A +G + +D + IE R++A ++ + Sbjct: 684 -------------------------IREAFVAPKGWLIASSDYSQIELRIMAHLSQDAGL 718 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF GED++ T A F V +V+ DQR + KV+ G++ Sbjct: 719 LAAFAAGEDIHRATAAEIFGVTSLEVSSDQRRMAKVINF--------------GLIYGMS 764 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A +A + + ++ V+ Sbjct: 765 ------------------------------AFGLARNLGLERSAAQLYIDRYFARYPGVA 794 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + GR L D+ + Sbjct: 795 AYMERTRKLAAE--------------------------QGYVETVFGRRLWLPDIHASGP 828 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEI 632 R +Q + D++ M+ K +V+ VHDE+ Sbjct: 829 RRAAAERA----------AINAPMQGTAADLIKMAMIAVDAALVREKLRSRVVMQVHDEL 878 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E P+ + + LM +PL AE + Sbjct: 879 VLEVPEEETHWVREHIPRLMAGVAQ--LDVPLLAEMGLGANW 918 >gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36] gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36] Length = 951 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 94/697 (13%), Positives = 198/697 (28%), Gaps = 155/697 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQ---VLK 58 L ID ET + D ++ +F ++ + + + Sbjct: 380 ILSIDTETTGTEPM----------DAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFR 429 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 EN V N ++ +L+ + + + T++ + + E Sbjct: 430 PLFENEKSMKVGQNIKYDMIILQNY-GVQVK-GKLFDTMLAHYVLQPELRHNMDYLAEIY 487 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + +LI K + Y D VT ++ LE Sbjct: 488 LH--YQTIHIDKLIG---------ARGKNQKNMRDLSPEDVYRYACEDADVTLKLKNVLE 536 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + I G +D +Q V ++++E+ + Sbjct: 537 KELKEQGAEHLFYEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMA 596 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF + + T+T T + VL S + ++ R Sbjct: 597 G-ETFNISSAKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLQSYRSKHDIIGKILEYR- 654 Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N GR+ + + TGR S QN+P +E Sbjct: 655 GLKKLLSTYIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIPIRDEDGKE-- 711 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I G + AD + IE R++A ++ ++ ++ Sbjct: 712 -----------------------IRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIE 748 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +G D++ T A+ + + VT D R K + Y + ++ Sbjct: 749 AFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISV-----FGLAERMGVS 803 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + E + + + + E + Sbjct: 804 RQEAKELIDGYFETYPQVKEYMDKSIQVAREQGYVETIF--------------------- 842 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 ++R +P + + +G Y + + + Sbjct: 843 --------------------HRKRFLPDINSR-----------NGVVRGYAERNAINAPI 871 Query: 581 NTTTRQLTREY---TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 + + + Y N L M+ L VHDE+ P Sbjct: 872 QGSAADIIKVAMAHIYQRFQAYN---------LKAKMI----------LQVHDELNFSVP 912 Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + ++ + M + +PLKA+ + Sbjct: 913 EAEKELVQKIVIEEMEQA--YRMQVPLKADCGWGNNW 947 >gi|26986868|ref|NP_742293.1| DNA polymerase I [Pseudomonas putida KT2440] gi|24981469|gb|AAN65757.1|AE016201_9 DNA polymerase I [Pseudomonas putida KT2440] Length = 915 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 104/695 (14%), Positives = 190/695 (27%), Gaps = 146/695 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET A+ ++ +F + H HD + Sbjct: 337 AFDTETTGLD----------AQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVL 386 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG 113 LK LE+ V N+ ++ +L +++ + T++ + + Sbjct: 387 LALKPLLEDPAKAKVGQNAKYDINILANGSPAIEMRGVAY-DTMLESYVLNSTAT----- 440 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + K L E + ++ G Y D +T + Sbjct: 441 ---RHDMDSLAQ-KYLDHTTIAFEDIAGKGAKQLTFNQINLDKAGPYAAEDADITLRLHH 496 Query: 174 RLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQEL 222 L+ ++ + + I G VD L + + V+ +L+ Sbjct: 497 ALQARLAQTPSVQPVLMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKMAELELRA 556 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L T L+ + G+ + T +T + VL +V Sbjct: 557 YELAG-ETFNLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVLDELALQGYPLPEVLM 615 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 S+ + L +N T + TGR S QN+P + Sbjct: 616 QYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAEGRR 675 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IAS G KL+ AD + IE R++A +A ++ Sbjct: 676 -------------------------IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF D++ T A F VA VT DQR K + L Y A + Sbjct: 711 LHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSA-----FGLAKQIG 765 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++ + + + + E + G K+ + Sbjct: 766 VDRKQSQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGR--RLYLPDINAKNPALR 823 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + G A KR V + + V V + Sbjct: 824 K---GAERTAINAPMQGTAADIIKRAMVKVDNWLSESGLDA--------RVILQVHDELV 872 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 + E++VQ V DE Sbjct: 873 LE----------------VREDLVQ-----------------------QVKDE------- 886 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ +PL E + Sbjct: 887 --------IRQHMSQAAQ--LDVPLLVEAGVGANW 911 >gi|237724388|ref|ZP_04554869.1| DNA polymerase I [Bacteroides sp. D4] gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4] Length = 971 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 95/695 (13%), Positives = 200/695 (28%), Gaps = 148/695 (21%) Query: 2 ATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQV 56 + +D ET +T ++ +F + ++ D + Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRTEAQKIVNE 447 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE 114 + A E V N ++ VL ++ T+V + + E Sbjct: 448 FRPAFEKEGALKVGQNIKYDMLVLGNY-GTEVR-GPLFDTMVAHYVLQPELRHNMDYLAE 505 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + +ELI K + +Y D +T ++ Sbjct: 506 IYLH--YQTIHIEELIG---------PKGKGQKNMRDLSPEAIYKYACEDADITLKLKNI 554 Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 LE E L + I G VD ++ ++++E+ Sbjct: 555 LEQELKTNDAEKLFYEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQ 614 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L + +++ LF + + T+T T + VL S + ++ + Sbjct: 615 LAGTD-FNIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEH 673 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + ++ L +N + T + TGR S QN+P + +E Sbjct: 674 R-GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKE- 731 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I +G + AD + IE R++A ++G+ + Sbjct: 732 ------------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMI 767 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ G+D++ T A+ + ++ +VT++QR+ K + Y +N+ Sbjct: 768 EAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISV-----FGLAERMNV 822 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + E + + + + + G +R ++S V Sbjct: 823 DRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFGR--KRYLPDINSRNSVVRG 880 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G A Sbjct: 881 Y---AERNAINAPIQGSAADII-------------------------------------- 899 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + Y +ENI ++L VHDE+ Sbjct: 900 ------KAAMVRIYQRFQSENI-------------------KSKMILQVHDELNFSVLPE 934 Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + M + + +PL+A+ + Sbjct: 935 EKEKVQKIVIEEMENA--YHMQVPLRADCGWGSNW 967 >gi|227544664|ref|ZP_03974713.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|227185389|gb|EEI65460.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] Length = 449 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 145/455 (31%), Positives = 223/455 (49%), Gaps = 19/455 (4%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +L + G +YA+ D ++LF + D PV++ D +P + Sbjct: 1 MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL++ + A N+ FER L + W C+ V + + GLP +L+ VG L L Sbjct: 61 QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK+ GKEL+ F CK RN P H + W+ F +Y + DV V EI ++ Sbjct: 121 PRQKITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 P+ E E +++DQ INDRG +D L + + + Q + LT + Sbjct: 181 FSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQLTGLA--N 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + G+ + L + + ++L + T QV R S+S+V K Sbjct: 239 PNSPLQLKNWLHQQ-GVETDSLAKASVAQLLQT---TTGTVHQVLALRQLLSKSSVKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP---TS 349 + +AM DG + G LQF GA+RTGRW+G + QNLPR S E + + Sbjct: 295 AMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTAL 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S +R+ I S+G VAD + +EARV+AW++GE+W+ AF ED+Y Sbjct: 355 AMLYESVPDVLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNEDIY 414 Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQ 442 + ++ F V + + R GK+ ELALGY Sbjct: 415 CASASQMFGVPVVKHGINGELRQKGKIAELALGYG 449 >gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855] gi|212664838|gb|EEB25410.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855] Length = 971 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 96/695 (13%), Positives = 200/695 (28%), Gaps = 148/695 (21%) Query: 2 ATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQV 56 + +D ET +T ++ +F + ++ D + Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRTEAQKIVNE 447 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE 114 + A E V N ++ VL ++ T+V + + E Sbjct: 448 FRPAFEKEGALKVGQNIKYDMLVLGNY-GTEVR-GPLFDTMVAHYVLQPELRHNMDYLAE 505 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + +ELI K + +Y D VT ++ Sbjct: 506 IYLH--YQTIHIEELIG---------PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNI 554 Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 LE E L + I G VD ++ ++++E+ Sbjct: 555 LEQELKTNDAEKLFYEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQ 614 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L + +++ LF + + T+T T + VL S + ++ + Sbjct: 615 LAGTD-FNIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEH 673 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + ++ L +N + T + TGR S QN+P + +E Sbjct: 674 R-GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKE- 731 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I +G + AD + IE R++A ++G+ + Sbjct: 732 ------------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMI 767 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ G+D++ T A+ + ++ +VT++QR+ K + Y +N+ Sbjct: 768 EAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISV-----FGLAERMNV 822 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + E + + + + + G +R ++S V Sbjct: 823 DRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFGR--KRYLPDINSRNSVVRG 880 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G A Sbjct: 881 Y---AERNAINAPIQGSAADII-------------------------------------- 899 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + Y +ENI ++L VHDE+ Sbjct: 900 ------KAAMVRIYQRFQSENI-------------------KSKMILQVHDELNFSVLPE 934 Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + M + + +PL+A+ + Sbjct: 935 EKEKVQKIVIEEMENA--YHMQVPLRADCGWGSNW 967 >gi|119512517|ref|ZP_01631596.1| DNA polymerase I [Nodularia spumigena CCY9414] gi|119462824|gb|EAW43782.1| DNA polymerase I [Nodularia spumigena CCY9414] Length = 970 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 105/705 (14%), Positives = 213/705 (30%), Gaps = 146/705 (20%) Query: 8 FETRSPIDLT----KCGICKYAEDVCVILFAFGFD--DHPVELWDCVHD-------PVMP 54 ET + D+ D ++ + H V+ Sbjct: 371 LETFTNPDIPVAWDTETSDLEPRDATLVGIGCCWGTQPDESAYIPIAHKFGENLSQDVVF 430 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112 L L + D N F+R V C + + T++ + P L + Sbjct: 431 AELSPILTSADYPKTFQNGKFDRLVF-RCQGIKLAGI-VFDTMLASYVLNPDTPHNLNDI 488 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 L+ ++ ++L+ + + + G YC V T ++ Sbjct: 489 S--LRYLGLILKSYEDLVP-------------KGQTIADISIASVGYYCCLQVHATFQLV 533 Query: 173 KRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++L K Q L + + G C++ A H L+Q ++++ KL++ Sbjct: 534 QKLREELEKFPALHKLLLEVEQPLEAVLAEMEYTGVCINSAYLHELSQQLEIDLAKLEET 593 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLTPQ-AIQ 275 S+ + ++L LF + GL + +T L +++ + Sbjct: 594 ATSIAG-ETFNLGSPKQLSVILFDKLGLSTKYSRKIKTGYSTDVATLEKLQEVDETGFVD 652 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 S+ ++ L + D RL + TGR S QN+P + Sbjct: 653 AMMEYRTLSKLKSTYVDALPALVRPDTQRLHTNFNQ-TVTATGRLSSSNPNLQNIPIRTA 711 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 S +R + G + AD + IE R+LA ++ Sbjct: 712 -------------------------FSRQIRKAFLPESGYLMAAADYSQIELRILAHLSQ 746 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 E L+A++ ED++ T F + +T D+R I K + + Y G+ F + Sbjct: 747 EPILLQAYQQNEDIHTVTARLVF--EKSDITSDERRIAKTINFGVIYGMGSLRFSR---- 800 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 ++ E + + +++ + +G R+++ Sbjct: 801 -STGIDKSIANEFIKRFNERYPQVFAYLEGVKKQAISQGYVETILG----------RRRY 849 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + N+ + + + + Sbjct: 850 ---VDFKNDSLRKLKNSKPEDIDL------------------------------------ 870 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHD 630 + L L R +Q S DI+ M+ K ++L VHD Sbjct: 871 SKLKNLGPEDAGLLRSAANAP------IQGSSADIIKIAMIRMHEVLQKYQARLLLQVHD 924 Query: 631 EIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+V E P + + +M + + +PL + + Sbjct: 925 ELVFEVPPQEWEELQPQIKSVMENAVT--LSVPLLVDVRAGDNWM 967 >gi|303237984|ref|ZP_07324527.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN] gi|302481774|gb|EFL44826.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN] Length = 920 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 94/693 (13%), Positives = 193/693 (27%), Gaps = 147/693 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58 L +D ET S + D ++ +F ++ + M + K Sbjct: 349 ILSLDTETTSVDAI----------DAELVGLSFSVEEKEAFYVAISPNREEALNMVNIFK 398 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116 EN ++ V N ++ VLK + + + T++ + + E L Sbjct: 399 PLYENEEILKVGQNIKYDYEVLKKY-GITLK-GKLFDTMIAHYLIQPELHHNMDYMAETL 456 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + +++I + K A +Y D +T + LE Sbjct: 457 --LNYQTVHIEDIIG---------PKGKKQKNMRDLAPAEVSDYACEDADITLRLKNALE 505 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P E L + + G +D ++I K + E+ L Sbjct: 506 PKLKEVNAESLFWEIEMPLVRVLADMELHGIRLDTEALEETSRIFTERMNKYEAEIYELA 565 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF + + T+T T + VL S + P ++ R Sbjct: 566 G-ETFNISSPKQVGEILFGKLQIMEKPKKTKTGQFVTSEEVLISLQSKHPIVEKILEYR- 623 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ L + + T + TGR S QN+P + +E Sbjct: 624 GIKKLLSTYIDALPKLVKPQTGHIHTSFNQALTATGRLSSSDPNLQNIPVRTDDGKE--- 680 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R C I AD + IE R++A ++ ++ ++A Sbjct: 681 ----------------------IRKCFIPEPDCLFFSADYSQIELRIMAHLSEDENMMEA 718 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G D++ T A+ ++ VT QR K + Y +++ Sbjct: 719 FRKGHDIHRATAAKIWHEDMENVTDAQRKKAKQANFGIIYG-----ITTYGLAQRMDIPN 773 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + + + +E + R +++ V Sbjct: 774 GEAKELIADYFKTFPKVQAYMEEAKEVARRKGYAETIFHR--RRYLADINSRNATVRGF- 830 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + G K + Sbjct: 831 --AERNAINAPIQGSEADIIK-----------------------------------VAMV 853 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 ++ RE ++L VHDE+ ++ Sbjct: 854 NIHQRFEREQI----------------------------RSKMILQVHDELNFSVYPEEK 885 Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + M + + +PL A+ K + Sbjct: 886 ELVERIVLEEMQNA--YQLRVPLIADAGWGKNW 916 >gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA] gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA] Length = 971 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 96/695 (13%), Positives = 200/695 (28%), Gaps = 148/695 (21%) Query: 2 ATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQV 56 + +D ET +T ++ +F + ++ D + Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRTEAQKIVNE 447 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE 114 + A E V N ++ VL ++ T+V + + E Sbjct: 448 FRPAFEKEGALKVGQNIKYDMLVLGNY-GTEVR-GPLFDTMVAHYVLQPELRHNMDYLAE 505 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + +ELI K + +Y D VT ++ Sbjct: 506 IYLH--YQTIHIEELIG---------PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNI 554 Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 LE E L + I G VD ++ ++++E+ Sbjct: 555 LEQELKTNDAEKLFYEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQ 614 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L + +++ LF + + T+T T + VL S + ++ + Sbjct: 615 LAGTD-FNIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEH 673 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + ++ L +N + T + TGR S QN+P + +E Sbjct: 674 R-GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKE- 731 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I +G + AD + IE R++A ++G+ + Sbjct: 732 ------------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMI 767 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ G+D++ T A+ + ++ +VT++QR+ K + Y +N+ Sbjct: 768 EAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISV-----FGLAERMNV 822 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + E + + + + + G +R ++S V Sbjct: 823 DRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFGR--KRYLPDINSRNSVVRG 880 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G A Sbjct: 881 Y---AERNAINAPIQGSAADII-------------------------------------- 899 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + Y +ENI ++L VHDE+ Sbjct: 900 ------KAAMVRIYQRFQSENI-------------------KSKMILQVHDELNFSVLPE 934 Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + M + + +PL+A+ + Sbjct: 935 EKEKVQKIVIEEMENA--YHMQVPLRADCGWGSNW 967 >gi|313496494|gb|ADR57860.1| PolA [Pseudomonas putida BIRD-1] Length = 915 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 104/695 (14%), Positives = 190/695 (27%), Gaps = 146/695 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET A+ ++ +F + H HD + Sbjct: 337 AFDTETTGLD----------AQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPAQLDREAVL 386 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG 113 LK LE+ V N+ ++ +L +++ + T++ + + Sbjct: 387 LALKPLLEDPAKAKVGQNAKYDINILANGSPAIEMRGVAY-DTMLESYVLNSTAT----- 440 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + K L E + ++ G Y D +T + Sbjct: 441 ---RHDMDSLAQ-KYLDHTTIAFEDIAGKGAKQLTFNQINLDKAGPYAAEDADITLRLHD 496 Query: 174 RLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQEL 222 L+ ++ + + I G VD L + + V+ +L+ Sbjct: 497 ALQARLAQTPSVQPVLMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKMAELELRA 556 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L T L+ + G+ + T +T + VL +V Sbjct: 557 YELAG-ETFNLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVLDELALQGYPLPEVLM 615 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 S+ + L +N T + TGR S QN+P + Sbjct: 616 QYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAEGRR 675 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IAS G KL+ AD + IE R++A +A ++ Sbjct: 676 -------------------------IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF D++ T A F VA VT DQR K + L Y A + Sbjct: 711 LHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSA-----FGLAKQIG 765 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++ + + + + E + G K+ + Sbjct: 766 VDRKQSQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGR--RLYLPDINAKNPALR 823 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + G A KR V + + V V + Sbjct: 824 K---GAERTAINAPMQGTAADIIKRAMVKVDNWLSESGLDA--------RVILQVHDELV 872 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 + E++VQ V DE Sbjct: 873 LE----------------VREDLVQ-----------------------QVKDE------- 886 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ +PL E + Sbjct: 887 --------IRQHMSQAAQ--LDVPLLVEAGVGANW 911 >gi|284048438|ref|YP_003398777.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] gi|283952659|gb|ADB47462.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] Length = 971 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 146/473 (30%), Positives = 223/473 (47%), Gaps = 39/473 (8%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL +D ET S ++L KCG+ KYAE ++LF + D V++ D +P+ + Sbjct: 1 MKTLSLDLETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGAVQVIDLAQGETIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKAC---FNLDIP-----------------IHRWICTLV 98 +AL + VT A N+ FER L + W C++V Sbjct: 61 DALTDDTVTKWAFNANFERVCLSRYLTDLGRSVDPFQDQHPLSQECARFLSPAGWKCSMV 120 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAW 154 + GLP +L+ VG L L +QKM+EG+ELI F CK RN P H + W Sbjct: 121 WSAYMGLPLSLEGVGAVLNLDNQKMKEGRELIRYFCVPCKETRTNGGRTRNLPQHALDKW 180 Query: 155 RLFGEYCKGDVTVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 F Y K DV V I +R P+ + E ++LDQ INDRG +D+ LA + Sbjct: 181 NQFKSYNKRDVEVEMAIQQRLQKYPVPEQVWEEYHLDQEINDRGIAIDLELAKQAVAMDA 240 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 R L L+ T + + + ++ WL + GL + L + + +L + ++ Sbjct: 241 KSRESLMAALKEKTG--LENPNSVLQMLGWL-EDHGLKTDSLGKKQVKELLKTAQEP--- 294 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 V R + ++S+V K + A+ DGR RG QF GA+RTGR +G QNLP+ Sbjct: 295 LRSVLQLRQKLAKSSVKKYQAMENAVCEDGRARGMFQFYGANRTGRVAGRHIQLQNLPQN 354 Query: 333 SRSHEELDQIIT---HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 + + + ++S +R+ + G K VV+D + IEARV+ Sbjct: 355 HLPDLSEARELVRQGNYEALDLLYDSIPDVLSQLIRTAFVPRAGMKFVVSDFSAIEARVI 414 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALG 440 +WMAGE+WK AF G+D+Y +T ++ F V + + R GK+ ELA Sbjct: 415 SWMAGEKWKSAAFAAGKDIYCSTASQMFGVPVVKHGVNGELRQKGKIAELACI 467 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 85/204 (41%), Gaps = 19/204 (9%) Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + + A++ + ++WR + + + W ++ A + I+ + Sbjct: 777 YGGSVGALKAMGALDMGIPEEELGSLVQSWRSANPHIVDFWWQVDGAVKTAIKQRIPV-- 834 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNT-------TTRQLTREY 591 V + L + LPSGR L Y +G N+ + T++ R Sbjct: 835 ----WVNNIRFVCQSGMLFIELPSGRQLSYVKPRIGENKFGGESVTYEGIGATKKWERLE 890 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM 651 +YG K ENIVQ +RDIL M IV VHDE++ E + + M Sbjct: 891 SYGPKFVENIVQGTARDILCYAMQTL--RCCAIVGHVHDELIIECSKE--VSVDAICEQM 946 Query: 652 TSNPSWAKGLPLKAEGYESKRYRK 675 + P WA+GL L+A+GYE Y+K Sbjct: 947 SRTPPWAEGLVLRADGYECAFYQK 970 >gi|330991543|ref|ZP_08315494.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1] gi|329761562|gb|EGG78055.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1] Length = 924 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 95/701 (13%), Positives = 173/701 (24%), Gaps = 157/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------------- 50 +D ET LT ++ + H Sbjct: 345 AVDTETDGLDPLT----------APLVGISLAPQCGRACYIPLGHQVDLMDSLGTPQMPV 394 Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--- 107 ++L+ + V V N+ F+ VL + T++++ + Sbjct: 395 GTALEILEPLFADPSVLKVFQNAKFDLLVLTQAG--SVQPAPIDDTMLISYAQSAGQHGQ 452 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 + + + I + Y D V Sbjct: 453 GMDELSR--------LTLDHSPIPYD----EVTGTGRNRVVFSQVDIARATPYAAEDADV 500 Query: 168 TREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 T +++ L P E+ L + + G VD ++ Sbjct: 501 TLRLWQVLRPRLRTSRALALYEEMERPLIPILADMERAGIAVDADDLRAMSIEFAQRMGV 560 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQA 273 ++ E+ L + ++L LF E GL T+ T VL Sbjct: 561 IEAEIHKLAG-REFNVGSPKQLGEILFDEMGLPGGKRTKAGAWGTDSSVLQDLADQGHDL 619 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + ++ + L+ +N T + + TGR S QN+P + Sbjct: 620 PARILAWRQLAKLKSTYADALLNQINPATGRVHTSFQMAVTTTGRLSSNDPNLQNIPIRT 679 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A+ G LV AD + IE R+LA +A Sbjct: 680 EEG-------------------------GRIRRAFVAAPGHLLVSADYSQIELRLLADVA 714 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 +AF G+D++ T + F + + R K + + Y A Sbjct: 715 NIPALREAFALGQDIHARTASEVFGIPLEGMDPLTRRRAKAINFGIIYGISA-----FGL 769 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L + ++ + ++ ++ G C A + Sbjct: 770 GRQLGIPPGEARGYIDAYFARYPGIRDYMERVKAEARAKGYVTTPFGRRCWVPGIADKSA 829 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 R N + G A KR V + D GR L Sbjct: 830 VRR-----NYAERQAINAPLQGGAADIIKRAMVRIPAALSDAG------LDGRML----- 873 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + +V Sbjct: 874 -----------------------------------------LQVHDE-----------LV 881 Query: 634 CETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 E D + L +M S + +PL E + Sbjct: 882 FEVRKDDADRLAALVRQVMESAAT--LSVPLVVETGTGTNW 920 >gi|109896347|ref|YP_659602.1| DNA polymerase I [Pseudoalteromonas atlantica T6c] gi|109698628|gb|ABG38548.1| DNA polymerase I [Pseudoalteromonas atlantica T6c] Length = 928 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 102/702 (14%), Positives = 199/702 (28%), Gaps = 162/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F ++ HD + Sbjct: 352 AFDTETTSLNYM----------QAELVGMSFSIEEGDAAYLPLAHDYVDAPQQLDRSAVL 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 + K LE+ + V + +++ VL ++++ + T++ + + + Sbjct: 402 ALFKPLLEDKNKAKVGQHLKYDKNVLANY-DINLQGIAY-DTMLESYVLNSVATRHDMDS 459 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + L E + ++ +Y D +T + Sbjct: 460 LAQYY------------LGLSTVHFEDIAGKGAKQLTFNQIPLDQAAQYAAEDADITLRL 507 Query: 172 FKRLEPLSSKEQELWYLD-----------QTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + + EL + + G +D +Q + +L++ Sbjct: 508 HNHIWQKLHQTPELASVLTEIEVPLATVLAKMEQFGVLIDSQKLSQQSQDLATRIMQLER 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 E+ L + ++L+ LF + L + T +T + VL P ++ Sbjct: 568 EVHELAG-EEFNLGSTKQLQEILFNKLSLPVLKKTPKGAPSTSEEVLQELALTYPLP-KL 625 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 S+ + L + +N T + TGR S QN+P + Sbjct: 626 LMEFRVLSKLKNTYTDKLPKMINPRSGRVHTSYHQAITATGRLSSTEPNLQNIPIRTEQG 685 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 VR IA G K+V AD + IE R++A ++ ++ Sbjct: 686 RR-------------------------VRQAFIARPGYKIVAADYSQIELRIMAHLSQDE 720 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 LKAF G+D++ T A FNV+ +VT +QR K + L Y A + Sbjct: 721 GLLKAFSQGKDIHTATAAEVFNVSLTEVTTEQRRNAKAINFGLIYGMSA-----FGLSKQ 775 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 LN++ + E + + + E+ G R Sbjct: 776 LNVSRHDAQHYMDLYFERYPGVLKYMEDSRIVAKENGYVSTVFGR---------RLYLPD 826 Query: 517 VSE----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ +A G A K+ + + LPS Sbjct: 827 INASNGLRRKGAERAAINAPMQGTAADIIKKAMLKVDAWID-------TLPS-------- 871 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 D M + Sbjct: 872 -----------------------------------DQTRMIM-QVHDE-----------L 884 Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + E + + N + LM S +PL E + + Sbjct: 885 IFEIKEQNVENDKNTIVDLMEKAVS--LDVPLIVEAGVGENW 924 >gi|300725095|ref|YP_003714423.1| 3' exonuclease [Xenorhabdus nematophila ATCC 19061] gi|297631640|emb|CBJ92353.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Xenorhabdus nematophila ATCC 19061] Length = 930 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 102/703 (14%), Positives = 194/703 (27%), Gaps = 161/703 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP----VELWDCVHD---------- 50 D ET LT ++ +F HD Sbjct: 351 SFDTETDGLDTLT----------ANLVGMSFAIAAGESEVEAAYLPLAHDYLDAPQQLDL 400 Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PS 107 + LK LE+ ++ + N F+R VL + T++ + Sbjct: 401 HEVLTALKPLLEDANLPKIGQNLKFDRGVLARYD--VVLEGIVFDTMLESYVLNSVAGRH 458 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 + ++ E L + E + ++ +Y D V Sbjct: 459 DMDSLAERH------------LSYKTTTFEDIAGKGKKQLTFNQIPLEEAAKYAAEDADV 506 Query: 168 TREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 T + + + P E L + + G +D ++ + V Sbjct: 507 TLRLHQAMYPQLASAEVLKKVFQKIEMPLVPVLSRMERTGVLIDARTLAEHSREITVRLD 566 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQ 272 +L++ +L + ++L+ LF + L + T +T + VL + Sbjct: 567 ELEKSAYAL-ADEEFNLASPKQLQVILFEKMKLPVLKKTPNGAPSTNEEVLEELAENHEL 625 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + +R ++ + L + +N T + TGR S QN+P Sbjct: 626 PRVILEHR-GLAKLKSTYTDKLPQMVNPLTNRVHTSYHQAVTATGRLSSRDPNLQNIPVR 684 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +R IA G +++ AD + IE R++A + Sbjct: 685 NEEGRR-------------------------IRQAFIAPTGYRIMAADYSQIELRIMAHL 719 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F V VT +QR K + L Y A Sbjct: 720 SQDKGLLAAFAQGKDIHRATAAEVFGVPLEHVTGEQRRSAKAINFGLIYGMSA-----FG 774 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + L + + E + N+ ++ EH + G + R Sbjct: 775 LSRQLGIPRGEAQRYMDLYFERYPGVLNYMERTRQQAAEHGFVETLEGRRLYLPEIKSRN 834 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 R + G A K + + P+ R Sbjct: 835 AMRR-----KASEREAINAPMQGTAADIIKLAMIAVDDWIVS------EKPNVR------ 877 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDE 631 M+ +V VH Sbjct: 878 -----------------------------------------MIMQVHDE---LVFEVH-- 891 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++ A + LM + +PLK + + Sbjct: 892 ------ESELAMAEQKIRALMEQSM--LLDVPLKVDVGIGDNW 926 >gi|160888685|ref|ZP_02069688.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492] gi|156861999|gb|EDO55430.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492] Length = 958 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 95/697 (13%), Positives = 197/697 (28%), Gaps = 155/697 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQ---VLK 58 L ID ET + D ++ +F ++ + + + Sbjct: 387 ILSIDTETTGTEPM----------DAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFR 436 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 EN V N ++ +L+ + + + T++ + + E Sbjct: 437 PLFENEKSMKVGQNIKYDMIILQNY-GVQVK-GKLFDTMLAHYVLQPELRHNMDYLAEIY 494 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + ELI K Y D VT ++ LE Sbjct: 495 LH--YQTIHIDELIG---------ARGKNQKNMRDLPPEDVYRYACEDADVTLKLKNVLE 543 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + I G +D +Q V ++++E+ + Sbjct: 544 KELKEQGAEHLFYEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMA 603 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF + + T+T T + VL S + ++ R Sbjct: 604 G-ETFNISSAKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLQSYRSKHDIIGKILEYR- 661 Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N GR+ + + TGR S QN+P +E Sbjct: 662 GLKKLLSTYIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIPIRDEDGKE-- 718 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I G + AD + IE R++A ++ ++ + Sbjct: 719 -----------------------IRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMID 755 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +G D++ T A+ + + VT D R K + Y + ++ Sbjct: 756 AFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISV-----FGLAERMGVS 810 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + E + + + + E+ + Sbjct: 811 RQEAKELIDGYFETYPQVKEYMDKSIQVARENGYVETIF--------------------- 849 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 ++R +P + + +G Y + + + Sbjct: 850 --------------------HRKRFLPDINSR-----------NGVVRGYAERNAINAPI 878 Query: 581 NTTTRQLTREY---TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 + + + Y N L M+ L VHDE+ P Sbjct: 879 QGSAADIIKVAMAHIYQRFQAYN---------LKAKMI----------LQVHDELNFSVP 919 Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + ++ + M + +PLKA+ + Sbjct: 920 EAEKELVQKIVIEEMEQA--YRMYVPLKADCGWGNNW 954 >gi|167031159|ref|YP_001666390.1| DNA polymerase I [Pseudomonas putida GB-1] gi|166857647|gb|ABY96054.1| DNA polymerase I [Pseudomonas putida GB-1] Length = 915 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 107/695 (15%), Positives = 193/695 (27%), Gaps = 146/695 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET A+ ++ +F H HD + Sbjct: 337 AFDTETTGLD----------AQKAQLVGLSFAVAPHEAAYVPLAHDYEGAPAQLDRDAVL 386 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG 113 LK LE+ V N+ ++ +L +++ + T++ + + Sbjct: 387 LALKPLLEDPAKAKVGQNAKYDINILANGSPAIEMRGVAY-DTMLESYVLNSTAT----- 440 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + K L E + ++ G Y D +T + + Sbjct: 441 ---RHDMDSLAQ-KYLDHTTIAFEDIAGKGAKQLTFNQINLDKAGPYAAEDADITLRLHQ 496 Query: 174 RLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQEL 222 L+ ++ + + I G VD AL H + + V+ +L+Q Sbjct: 497 ALQARLAQTPSVQPVLMDIEMPLVPVLAKIERQGALVDAALLHVQSGELGVKMGELEQRA 556 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L L+ + G+ + T +T + VL L +V Sbjct: 557 YELAG-EEFNLGSPKQLGAILYDKLGMPVLSKTAKGQPSTAEAVLDELALLGYPLPEVLM 615 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 S+ + L +N T + TGR S QN+P + Sbjct: 616 QYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAEGRR 675 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IAS G KL+ AD + IE R++A +A ++ Sbjct: 676 -------------------------IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF D++ T A F VA VT DQR K + L Y A + Sbjct: 711 LHAFRNDLDVHRATAAEVFGVALQDVTTDQRRKAKAINFGLIYGMSA-----FGLAKQIG 765 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++ + + + + E + G K+ + Sbjct: 766 VDRKQSQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGR--RLYLPDINAKNPALR 823 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + G A KR V + + V V + Sbjct: 824 K---GAERTAINAPMQGTAADIIKRAMVNVDNWLSESGLDA--------RVILQVHDELV 872 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 + E++VQ V DE Sbjct: 873 LE----------------VREDLVQ-----------------------QVKDE------- 886 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ +PL E + Sbjct: 887 --------IRQHMSQAAQ--LDVPLLVEAGIGANW 911 >gi|330858980|emb|CBX69339.1| DNA polymerase I [Yersinia enterocolitica W22703] Length = 612 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 107/697 (15%), Positives = 200/697 (28%), Gaps = 152/697 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET L+ +I +F HD + Sbjct: 36 AFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVL 85 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ V N F++++L +D+ T++ + + + Sbjct: 86 AQLKPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIA-FDTMLESYVLDSVAGRHDMDS 143 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 144 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 191 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + I G +D + ++ + + +L++ Sbjct: 192 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILVAHSKELTIRLDELEK 251 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 252 QAHEL-AEEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 310 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 311 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEG 369 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA EG +++ AD + IE R++A ++ ++ Sbjct: 370 RR-------------------------IRQAFIAPEGYRIMAADYSQIELRIMAHLSQDK 404 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F ++ +VT +QR K + L Y A Sbjct: 405 GLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSA-----FGLARQ 459 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 LN+ + E + + ++ E G R R Sbjct: 460 LNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRR 519 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + G A KR + + + + ++ + Sbjct: 520 -----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRV-------------- 560 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 I+Q +V VH E V E+ Sbjct: 561 ------------------------IMQ-------------VHDE---LVFEVH-ESVLES 579 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + LM + A +PLK + + Sbjct: 580 AE------QKIRELMEQSMQLA--VPLKVDVGVGYNW 608 >gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01] gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01] Length = 937 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 105/695 (15%), Positives = 199/695 (28%), Gaps = 148/695 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F ++ HD + Sbjct: 361 AFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWVL 410 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 + LK LE+ V N ++ +VL +++ + T++ + Sbjct: 411 EQLKPILEDDTQAKVGQNLKYDMSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMDS 468 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ E + ++ Y D VT + Sbjct: 469 LALRFLQHS----------CISFEQIAGKGKKQLTFNQIELGEASPYAAEDADVTLRLHN 518 Query: 174 RLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL +++ L + I G +D L +Q + V +L+Q+ Sbjct: 519 RLMENIEQDEKLKTIYEEIEVPLIPVMSRIERTGVFIDDMLLGAQSQEIAVRLDELEQKA 578 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + GL + T + T + VL P + Sbjct: 579 YEI-AEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPLPKLIIE 637 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N++ T + TGR S QN+P + Sbjct: 638 YR-GLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 696 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G K++ D + IE R++A ++G++ Sbjct: 697 -------------------------IRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKAL 731 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF+ G+D++ T A VA QVT +QR K + L Y A L Sbjct: 732 LEAFQQGKDIHAATAAEIIGVAIDQVTTEQRRRAKAVNFGLIYGMSA-----FGLAKQLG 786 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + ++ E + + + E + G + R R Sbjct: 787 IPRGEAQHYMDTYFERYPGVMQYMEDTRSAASEQGFVETIYGRRLHLPEIQSRNGMRR-- 844 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 +A G A K+ + + + + + + L V + Sbjct: 845 ---KAAERAAINAPMQGTAADIIKKAMLLVDEWIQAEGDGRVKLLM-------QVHDELV 894 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 + + E+ VQ Sbjct: 895 FEVQESALAE---------IESKVQ----------------------------------- 910 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 LM S +PL AE + Sbjct: 911 ----------QLMESAAD--LEVPLVAEAGHGDNW 933 >gi|222099813|ref|YP_002534381.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359] gi|221572203|gb|ACM23015.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359] Length = 893 Score = 364 bits (933), Expect = 4e-98, Method: Composition-based stats. Identities = 115/697 (16%), Positives = 215/697 (30%), Gaps = 153/697 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------MPQVL 57 +D ET S + ++ + F H + L Sbjct: 321 ALDLETSSLDPF----------NCEIVGISVSFKPKTAYYIPLHHRNAQNLDETLVLSKL 370 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 KE LE+ IV N ++ VL + P++ T++ A L+ + Sbjct: 371 KEILEDPSSKIVGQNLKYDYKVLM-VKGIS-PVYPHFDTMIAAYLLEPNEKKFNLEDLS- 427 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 LK KM +EL++ Y D +T ++K Sbjct: 428 -LKFLGYKMTSYQELMSFSSP--------LFGFSFADVPVDKAANYSCEDADITYRLYKI 478 Query: 175 LEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L E L + + G VD L++ + +L +++ Sbjct: 479 LSMKLHEAELENVFYRIEMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEKIYQ 538 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKLTPQAIQVFNN 279 + + +++ LF + G+ T T + VL + Sbjct: 539 IAG-EPFNINSPKQVSKILFEKLGIKPRGKTTKTGEYSTRIEVLEEIANEHEIVPLILEY 597 Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R + + ++TL + +N GR+ + G + TGR S QNLP S +E Sbjct: 598 R-KIQKLKSTYIDTLPKLVNPKTGRIHASFHQTG-TATGRLSSSDPNLQNLPTKSEEGKE 655 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397 +R ++ +V AD + IE R+LA ++G++ Sbjct: 656 -------------------------IRKAIVPQDPDWWIVSADYSQIELRILAHLSGDEN 690 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +KAFE G D++ T +R +NV P +V ++ R +GK++ ++ Y + L Sbjct: 691 LVKAFEEGIDVHTLTASRIYNVKPEEVNEEMRRVGKMVNFSIIYGVTP-----YGLSVRL 745 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + S + ++ + + E G + + R K+ Sbjct: 746 GIPVKEAEKMIISYFTLYPKVRSYIQQVVAEAKEKGYVRTLFGRKRDIPQLMARDKN--- 802 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +E + T G A L D+ Sbjct: 803 --TQSEGERIAINTPIQGTAADII-------------------------KLAMIDIDEEL 835 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 N + M+ + VHDE+V E P Sbjct: 836 RKRN----------------------------MKSRMI----------IQVHDELVFEVP 857 Query: 638 DTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 D ++ ++ + MT+ +PL+ + K + Sbjct: 858 DEEKEELVDLVKNKMTNVVK--LSVPLEVDISIGKSW 892 >gi|118602134|ref|YP_903349.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567073|gb|ABL01878.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 906 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 94/710 (13%), Positives = 200/710 (28%), Gaps = 172/710 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T D ET S + + ++ + F D + HD Sbjct: 332 KTFVFDLETTSLDYM----------NATIVGWVFLVDKNS-FYVPVGHDYLNAPKQLDFK 380 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + LK LE+ + V N ++ +L +D+ T+V + Sbjct: 381 DVLDQLKLILEDVSIGKVGQNLKYDAHILANYQ-IDLQGIS-DDTMVKSYCLNSVATRHN 438 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + + E L + + + ++ Y V VT Sbjct: 439 IDDLSEYY------------LNHKTIHFDDIAGKGKKQITFNQVDLETAFPYACEYVIVT 486 Query: 169 REIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + L+ + L + + G +D+ T + + Sbjct: 487 DLLNHVLDEEIVQYPKLVKLYQNLELPLIKVLLCMERNGIELDMNELSTQQIDIVQQMKD 546 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGL------HLEDLTETTCQRVLSSNKKLTP 271 + ++ L + + ++++ LF GL +T + L P Sbjct: 547 IQAQVFELAG-DIFNLESPKQIQQILFEPEGLGLTPLKKTPKGAPSTNEEALKLL--DHP 603 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + + R ++ L L + ++ + T + TGR S QN+P Sbjct: 604 LVDLILSYR-TLTKLNSTYLEALPKQIDLNTHRLHTSYHQAVTVTGRLSSSNPNLQNIPI 662 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 S+ +R +A + ++ AD + IE R++A Sbjct: 663 RSKQG-------------------------ARIRGAFVAGKDNVIIAADYSQIELRIMAQ 697 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ ++ L AF +D++ T + FN+ +VTK R K + L Sbjct: 698 LSQDKNLLDAFNHDKDVHSVTASTMFNMPINEVTKKHRRRSKAINFGLI----------- 746 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ + ++ + Sbjct: 747 ---YGMSAFGLTKQID------------------------------VSIIEAKQYIDTYF 773 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + V + + ++ + + GR L Sbjct: 774 DNYPGVLHYMDSIKESAK--------------------------VWGYVETVMGRRLYLP 807 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIV 625 + + L R +Q S DI+ + M++ ++ Sbjct: 808 QINSKNKILQQH---ALRTAINAP------MQGSSADIIKKSMLDIHAWIGENNPDIRMI 858 Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 + VHDE+V E ++ + + LM + + +PLK ++ Sbjct: 859 MQVHDELVFEVSESKADEFAHKIQGLMANV--YLLDIPLKVNVGIGTSWQ 906 >gi|227544275|ref|ZP_03974324.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|227185735|gb|EEI65806.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] Length = 449 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 144/455 (31%), Positives = 228/455 (50%), Gaps = 19/455 (4%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S +L + G+ +YA+ D ++LF + D PV++ D +P + Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 E L+N ++ A N+ FER L + W C+ V + + GLP +L+ +G L L Sbjct: 61 EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK+ GKEL+ F CK RN P H + W+ F +Y + DV V EI ++ Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180 Query: 175 --LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 P+ E E +++DQ INDRG +D L + + +V + Q + LT + Sbjct: 181 LECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTGLA--N 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + G+ L++ + ++L + T QV R S+S+V K Sbjct: 239 PNSPLQLKDWLQQQ-GIKTNSLSKASVAQLLQT---TTGTVHQVLALRQLLSKSSVKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LPTS 349 + +AM DGR+ G LQF GA+RTGRW+G + QNLPR S E + + +P Sbjct: 295 AMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPAL 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S +R+ I S+ VAD + +EARV+AW++ E+W+ ++F ED+Y Sbjct: 355 AMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDIY 414 Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQ 442 + ++ F V + + R GK+ ELALGY Sbjct: 415 CASASQMFGVPVVKHGINGELRQKGKIAELALGYG 449 >gi|22298882|ref|NP_682129.1| DNA polymerase I [Thermosynechococcus elongatus BP-1] gi|22295063|dbj|BAC08891.1| DNA polymerase I [Thermosynechococcus elongatus BP-1] Length = 945 Score = 363 bits (932), Expect = 5e-98, Method: Composition-based stats. Identities = 108/699 (15%), Positives = 210/699 (30%), Gaps = 150/699 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVHDP-------VMPQVL 57 D ET + D ++ + V H L Sbjct: 361 DTETTALNP----------RDAALVGLGCCWGAAPDQVAYLPLGHKEGQNLPLEETLAAL 410 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG-E 114 + LE V N+ F+R VL + + T++ + LK + Sbjct: 411 RPILEGDRYPKVLQNAKFDRLVL-RFQGIQLR-GVVFDTMLASYVINPEASHNLKDLCQR 468 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L L +Q +++ + +YC DV T + ++ Sbjct: 469 YLPLQAQSYRTL----------------VGKDQTLADLSPATVAQYCGLDVHTTYLLKEK 512 Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 LE + + + G +D L+Q ++ + L Q+ Sbjct: 513 LEADLTPRLRQLLLEVELPLEPILAEMEATGIRIDSDYLRQLSQELEQQLAALQQQAWDA 572 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNNR 280 + ++L LF GL + T+ +T L + P + ++R Sbjct: 573 VGQP-FNLASPKQLSELLFGTLGLDTKKTHKTKLGYSTDAATLEKLRGDHPVIDLILSHR 631 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 ++ ++ L + D GR+ + TGR S QN+P + Sbjct: 632 -TLAKLKSTYVDVLPTLVRPDTGRVHTEFNQAV-TATGRLSSSSPNLQNIPIRTE----- 684 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 S +R I G LV AD + IE R+LA ++ E L Sbjct: 685 --------------------FSRQIRRAFIPEAGWLLVAADYSQIELRILAHLSQEPALL 724 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 A++ G D++ T + ++ +R +GK++ + Y G + F + A + Sbjct: 725 AAYQEGADVHRLTAQFL--LEKTDISSSERRLGKMINFGVIYGMGPQRFAREA-----GV 777 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + V + ++ R M+ + +G + + Sbjct: 778 SVAEAKVFIQRFYNRYPRVFDYLRQMERLALSQGYVETILGR------RRYFA------- 824 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + ++ +L V DV ++ Sbjct: 825 ------------------------------FESRELQSLRGKPLD----VLADVDPSKLK 850 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHDEIVCE 635 ++ R L R +Q S DI+ M+ ++L VHDE+V E Sbjct: 851 MSNYERGLLRAAANAP------IQGSSADIIKCAMVKLAPLLPPEKARLLLQVHDELVLE 904 Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + +M++ +PL + Y + + Sbjct: 905 MTPEAWEHLQTTIPEVMSTAVP--LSVPLAVDIYAAANW 941 >gi|227327116|ref|ZP_03831140.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 929 Score = 363 bits (932), Expect = 5e-98, Method: Composition-based stats. Identities = 104/697 (14%), Positives = 199/697 (28%), Gaps = 153/697 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54 D ET LT +I +F HD + Sbjct: 354 AFDTETDGLDTLT----------ANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRTKVL 403 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 + K LE+ + + N F++ V++ ++D+ T++ + + + Sbjct: 404 ALFKPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIA-FDTMLESYVLDSVAGRHDMDS 461 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT + Sbjct: 462 LAERY------------LSHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLHL 509 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++L L + I G +D A+ ++ + + +L+ Sbjct: 510 HQKLWGKLQPHTDLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKRLTIRLAELET 569 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L +T + VL+ P + Sbjct: 570 QAYELAG-EEFNLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALGYPLPKLI 628 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N + T + TGR S QN+P + Sbjct: 629 LEYR-GLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEG 687 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA +G +V AD + IE R++A ++G++ Sbjct: 688 RR-------------------------IRQAFIAPQGYSIVAADYSQIELRIMAHLSGDK 722 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G D++ T + F A +VT +QR K + L Y A + Sbjct: 723 GLLNAFANGLDIHRATASEVFGTALDKVTSEQRRSAKAINFGLIYGMSA-----FGLSRQ 777 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 LN+ N E + +++ ++ EH G R +R Sbjct: 778 LNIPRSESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMAR 837 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 +A G A K+ + + + Sbjct: 838 -----KGAERAAINAPMQGTAADIIKKAMIAIDDWLRKD--------------------- 871 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 K+ M +V +HD ++ Sbjct: 872 -----------------TPKV-------------KMIM-QVHDE---LVFEIHDSVI--- 894 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + S + LM +PL+ + + Sbjct: 895 ----EESISKIKVLMEGCMQ--LNVPLQVDIGTGMNW 925 >gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 7120] gi|17130601|dbj|BAB73211.1| DNA polymerase I [Nostoc sp. PCC 7120] Length = 977 Score = 363 bits (932), Expect = 5e-98, Method: Composition-based stats. Identities = 104/704 (14%), Positives = 199/704 (28%), Gaps = 156/704 (22%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVH-------DPVMPQVL 57 D ET + D ++ + H ++ L Sbjct: 391 DTETSALEP----------RDAALVGIGCCWGTETDASAYIPLAHTKGENLNQDIVLAAL 440 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG-E 114 + LE+ D N+ F+R V +++ ++ + L + Sbjct: 441 RPILESADYPKTFQNAKFDRLVFL-VQGINL-TGVVFDPMLASYVLNPDTSHNLTDLTQR 498 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L L+ Q + + K YC V T ++ + Sbjct: 499 YLGLTIQNYVDL----------------VPKGKTIADINISAVANYCCLQVYATFQLVAK 542 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L EQ L + T+ G ++ A H L+Q ++++ KL ++ Sbjct: 543 LREELAKTPNLDKLLREVEQPLESVLATVEYTGVRINSAYLHELSQQLEIDLAKLQEQAT 602 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLTP--QAIQV 276 L + ++L LF + GL + +T L +++ + Sbjct: 603 ELAG-EKFNLGSPKQLSYILFEKLGLSTKYSRKIQTGYSTDAATLEKLQEVDDTGFVNAI 661 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R S+ ++ L + D + T A+ TGR S QN+P + Sbjct: 662 IEYR-TLSKLKSTYVDALPALVRPDTQRVHTDFNQTATSTGRLSSSNPNLQNIPIRTA-- 718 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 S +R + G + AD + IE R+LA ++ E Sbjct: 719 -----------------------FSRQIRKAFLPESGWLMAAADYSQIELRILAHLSQEP 755 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++A++ ED++ T F V D+R I K + + Y G+ F + Sbjct: 756 LLVQAYQQNEDIHTVTAKLVF--EKEDVNSDERRIAKTINFGVIYGMGSLKFSR-----S 808 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ E + + +++ + Sbjct: 809 TGIDKNVANEFIKRFNERYAKIFAYLEGVKKQAISLGYVETI------------------ 850 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-N 575 +RR K D+ + Sbjct: 851 -----------------------LGRRRYFDFTNNSLRKLKGSKP---------EDIDLS 878 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHDE 631 L L R +Q S DI+ M+ K ++L VHDE Sbjct: 879 KLKNLGPYDAGLLRSAANAP------IQGSSADIIKIAMVQIHEVLKKYQARLLLQVHDE 932 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 +V E P + + +M + +PL + + + Sbjct: 933 LVFEVPPQEWAELQPQIKSVMENAVK--LSVPLVVDVRAGENWM 974 >gi|294507650|ref|YP_003571708.1| DNA polymerase I [Salinibacter ruber M8] gi|294343979|emb|CBH24757.1| DNA polymerase I [Salinibacter ruber M8] Length = 949 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 110/698 (15%), Positives = 202/698 (28%), Gaps = 162/698 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDPVMPQVLKE 59 D E S +T ++ +F + + VL Sbjct: 381 AFDAEATSRDPMT----------ADLVGLSFSSEAERATYVPTPLPDDTPTDAVLDVLGP 430 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALK 117 L D + HN ++ +LK +++ T+V L V + Sbjct: 431 VLAR-DTEKLGHNLKYDLLLLKQH-GVEV-GGTLFDTMVAHYLVAPEENHNLDDVARS-- 485 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + + KM +LI Y D ++ + LE Sbjct: 486 VLNYKMVPIADLI----------GDETDRDSMREVDVETAAPYACEDADISYRLADELEA 535 Query: 178 LSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 L ++ T+ G +D + + ++ + +++E+ L Sbjct: 536 QLEDGNVLDVAHDIEFPLVHVLATMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFELAG 595 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + ++L LF + L + T +T + VL V + Sbjct: 596 -EEFNINSTQQLGEILFEKLDLPVVSKTPTGKPSTKESVLQELSTEHEIPGLVL-DWRST 653 Query: 284 SRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + L++L E ++ + GRL + + TGR S QN+P + Sbjct: 654 YKLKSTYLDSLGELVHPETGRLHTSFNQTR-TATGRLSSSDPNLQNIPIRTEMGR----- 707 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R + +G L+ AD A IE R+LA M+G+ F Sbjct: 708 --------------------QIRRAFVPKDGWALLSADYAQIELRILAAMSGDDAMRATF 747 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + G D++ AR + + P VT +QR+ K + G++ Sbjct: 748 QEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNY--------------GIPYGISPWGL 793 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + + K +R+ + VS+L N Sbjct: 794 AQR------------------------------MRMPVDEAQDIIKQYRKSYPGVSQLLN 823 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 EL E+ + G A GR D+ ++ S Sbjct: 824 EL---VEKAQDKGYAETLL-----------------------GRRRYLPDIDSSNS---N 854 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCET 636 R +Q D++ M ++L VHDE+V E Sbjct: 855 ARSAAERVA------VNMPIQGTQADMIKIAMNRIHDRLAGDDWATQMLLQVHDELVFEV 908 Query: 637 PDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P + A M+ M +P+ + + Sbjct: 909 PPDELDAAQTMIDDEMRDALPL-DDVPVTVDMDTGDNW 945 >gi|295114046|emb|CBL32683.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Enterococcus sp. 7L76] Length = 545 Score = 363 bits (931), Expect = 7e-98, Method: Composition-based stats. Identities = 139/438 (31%), Positives = 216/438 (49%), Gaps = 18/438 (4%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L +D ET S +DL+KCG+ KY+E D ++LFA+ D PVE+ D D +P + Sbjct: 1 MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 +L + V A N+ FER L LD + W CT+V + GLP +L VG L Sbjct: 61 TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120 Query: 117 KLSSQKMEEGKELIARFCK---GETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 L+ QK+ EGK+LI FC RN P+H W F Y DV V I Sbjct: 121 GLNKQKLTEGKDLIRYFCVPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRDVEVEIAIQ 180 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +L P+ + ++LDQ INDRG +D Q+ ++ + L+Q+L+ LT + Sbjct: 181 GKLSNFPVLDSVWKEYWLDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQELTG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + + +++ WL GL E L + +L + QV R + ++S+V K Sbjct: 239 ENPNSVLQMRGWLLDH-GLETESLGKKAVDELLEQ--PIDENLKQVLVLRQQLAKSSVKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL---P 347 + SD R RG QF GA+RTGR++G QNLP+ S + + Sbjct: 296 YQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIHLQNLPQNHMSDLSEARSLVKQSNFE 355 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + ++S+ +R+ + EG K +V+D + IEARV+AW++GE+W+ + F+ G D Sbjct: 356 MLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQEVFKNGGD 415 Query: 408 LYVTTYARSFNVAPAQVT 425 +Y + ++ F V + Sbjct: 416 IYCASASQMFGVPVEKHG 433 >gi|124022578|ref|YP_001016885.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303] gi|123962864|gb|ABM77620.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303] Length = 986 Score = 363 bits (931), Expect = 7e-98, Method: Composition-based stats. Identities = 112/716 (15%), Positives = 214/716 (29%), Gaps = 161/716 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD--------- 50 + +D ET + ++ + + + H Sbjct: 386 KPVALDTETTALNPFC----------AELVGLGVCWGEGLQDLAYIPIGHHPPAELLEAE 435 Query: 51 -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 + + + L + D N+ ++R +L L + + TL+ Sbjct: 436 AACQLPLEAVLKAIAPWLASNDHPKALQNAKYDRLILLRH-GLALE-GVVMDTLLADY-- 491 Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 L+ L E K L + + A YC Sbjct: 492 -----LRDAAAKHGLEVMAEREFK------ITPTGFSELVGKGQTFADVAIPTASLYCGM 540 Query: 164 DVTVTRE-----------IFKRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIV 211 DV +TR + +L PL + EQ L + + G +D+ TL+ + Sbjct: 541 DVHLTRRLALRLRAQLEDMGAKLLPLLEQVEQPLEPVLALMEATGIRIDLPYLQTLSVEL 600 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTETTCQRVLSSN 266 +L+++ + ++L LF GL+ + +T VL Sbjct: 601 GETLERLEEQAREAAGVD-FNLASPKQLGELLFETLGLNRKKSRRTKTGWSTDANVLEKL 659 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFP 325 + P V +R+ S+ ++ L + + + GR+ + TGR S Sbjct: 660 EADHPVVPLVLEHRV-LSKLRSTYVDALPQLVESETGRVHTDFNQAV-TATGRLSSSNPN 717 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P + S +R + E +L+ AD + IE Sbjct: 718 LQNIPIRTE-------------------------FSRRIRKAFLPQENWQLLSADYSQIE 752 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+L ++GE+ +AF G+D++ T + +V+ D+R +GK + + Y GA Sbjct: 753 LRILTHLSGEEVLQEAFRNGDDVHALTARLL--LDKDEVSSDERRLGKTINFGVIYGMGA 810 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 Q+ A +TG++ + + + F + + +G Sbjct: 811 ---QRFARSTGVS--QAEAKDFLSRYKQRYAKVFTFLELQERLALSEGYVETLLG----- 860 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 R P + + L+ P Sbjct: 861 --------------------------------------RRRPFHFDRNGLGRLLGKDPM- 881 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620 D+ + + Q R +Q S DI+ M+ + Sbjct: 882 ------DIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQEKLTAAD 929 Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE+V E T + + M +PL E + Sbjct: 930 LPARLLLQVHDELVLEVDPTALEDVQQLVVQTMEKAVE--LSVPLVVETGIGDNWM 983 >gi|111115375|ref|YP_709993.1| DNA polymerase I [Borrelia afzelii PKo] gi|110890649|gb|ABH01817.1| DNA polymerase I [Borrelia afzelii PKo] Length = 889 Score = 362 bits (930), Expect = 8e-98, Method: Composition-based stats. Identities = 100/700 (14%), Positives = 202/700 (28%), Gaps = 162/700 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54 + ID ET S + Y +I + F + + Sbjct: 322 KYISIDTETSS--------LDIYT--ARLIGISISFKEFEGYYIPIEAKGKIYIEKHYII 371 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112 Q E+ + I+ N F+ +LK IP + T++ A +L + Sbjct: 372 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFL 428 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K K + +++I +N + + Y D +T +F Sbjct: 429 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 473 Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 E + + + G +D + + E ++ E+ Sbjct: 474 NIFTKKLKEDGLDKLMHEVEMPFNNVIIEMEENGIYLDREYLKEYGKELGQELELIENEI 533 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + L L + + +T +VL S + +R Sbjct: 534 IKSIGI-NFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLIGQHESIENIIKHR 592 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L+E +N T + TGR + QN+P + Sbjct: 593 Q-IAKLKSTYTDNLIELINHKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 649 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R G + AD + IE +LA ++ ++ +K Sbjct: 650 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIK 686 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE +D++ T ++ F + ++T D R I K + ++ Sbjct: 687 AFENNKDIHTETASKLFKIEEKEITPDLRRIAKSIN--------------FGIIYRMSDF 732 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A E + ++ + ++ E Sbjct: 733 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 762 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 T R +++ +N Sbjct: 763 ITNQINFVRNT--------------------------GYSETILKRRRYIKEINSNNYLE 796 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 + R +I+Q + DI+ M+ K I+L VHDE++ Sbjct: 797 RSA---AERIAI------NSIIQGSAADIMKIAMVRVFNEFKSKKMESKILLQVHDEMLI 847 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+P ++ + +M ++ LPL+A K + Sbjct: 848 ESPIKEKNEVEKILKIMMET-AYTLNLPLRANIETGKSWG 886 >gi|332828281|gb|EGK00993.1| hypothetical protein HMPREF9455_02782 [Dysgonomonas gadei ATCC BAA-286] Length = 931 Score = 362 bits (930), Expect = 8e-98, Method: Composition-based stats. Identities = 96/701 (13%), Positives = 191/701 (27%), Gaps = 155/701 (22%) Query: 2 ATLF------IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----P 51 T+ D ET ++ +F F + D Sbjct: 353 KTIASQQSCCFDTETTGLDPNVS----------ELVGMSFAFREGEAYYVPVPADFEKAK 402 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + + + EN + + N ++ VLK + + R T++ + Sbjct: 403 AIVEQFRPFFENGETEKIGQNIKYDIIVLKKY-GIHVR-GRLFDTMIAHYLINPELRHNM 460 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E K ELI +Y D +T Sbjct: 461 DYMAETY--LKYKTIHIDELIG---------SRGKNQLNMRSLRPDQIKDYACEDADITL 509 Query: 170 EIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 ++ LE K+ L Y+ + G +D ++ + +E ++ Sbjct: 510 KLKAILEKAIEKQDLGKLLYDIELPLIYVLADMEYTGVRLDKTALAEYSKTLTLELQGIE 569 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAI 274 E+ + +++ LF + + T+T T + L S K Sbjct: 570 SEIYK-AAEQEFNINSAKQVGEVLFDKLKIVEKPKKTKTGQYVTSEETLESMKDAHSIVG 628 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ R + ++ L ++ D +L + + TGR S QN+P Sbjct: 629 KILEYR-GLKKLLSTYIDALPLLVSPLDDKLHTSYNQ-TVTATGRLSSSNPNLQNIPIRD 686 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +E +R IA E AD + IE R++A ++ Sbjct: 687 AQGKE-------------------------IRKAFIADEACIFFSADYSQIELRIMAHLS 721 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + + AF +GED++ T A+ + + ++VT D R K + Y Sbjct: 722 QDPTMIDAFNSGEDIHAATAAKIYKIPISEVTGDMRRKAKTANFGIIYGISV-----FGL 776 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L++ + + + + + + G +R + Sbjct: 777 AERLSIPRGEAKELIDGYFATYPKVKEYMDKSISVARTNNYVETVFGR--KRYLPDINSR 834 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ V + G A K Sbjct: 835 NTTVRGY---AERNAINAPIQGSAADIIK------------------------------- 860 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 +N + RE ++L VHDE+ Sbjct: 861 ----VAMNRIFDRFERENI----------------------------KSKMILQVHDELN 888 Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PLKA+ + K + Sbjct: 889 FNVESNELDKVQKIVIEEMENAYKLV--VPLKADCGKGKNW 927 >gi|216264622|ref|ZP_03436614.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a] gi|215981095|gb|EEC21902.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a] Length = 908 Score = 362 bits (930), Expect = 8e-98, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 203/700 (29%), Gaps = 162/700 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54 + ID ET S T +I + F + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112 Q E+ + I+ N F+ +LK IP + T++ A +L + Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K K + +++I +N + + Y D +T +F Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492 Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + E + + + G +D + + E ++ E+ Sbjct: 493 NLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEI 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + L L + + +T +VL S ++ + R Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKIKKDSTDIKVLESLREQHESIENLIKYR 611 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L+E +N T + TGR + QN+P + Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R G + AD + IE +LA ++ ++ +K Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE +D++ T ++ F + ++T + R I K + ++ Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A E + ++ + ++ E Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 R +++ +N Sbjct: 782 IINQINFVRNA--------------------------GYSETILKRRRYIKEINSNNYLE 815 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 + R +I+Q + DI+ M+ K I+L VHDE++ Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+P +E + +M ++ LPL+A K + Sbjct: 867 ESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905 >gi|254432862|ref|ZP_05046565.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001] gi|197627315|gb|EDY39874.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001] Length = 990 Score = 362 bits (930), Expect = 8e-98, Method: Composition-based stats. Identities = 110/722 (15%), Positives = 203/722 (28%), Gaps = 173/722 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHDPVMPQVLK--- 58 + +D ET + ++ + + + H P + L Sbjct: 388 VALDTETTALNPF----------QAELVGLGVAWGEGLTELAYIPIGHQPPVADDLLSET 437 Query: 59 -----------------EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLA 100 L + + N+ ++R +L +P+ + TL+ Sbjct: 438 PTPPRQLPLDEVLTALAPWLASAEHPKALQNAKYDRLILLRH---GLPLGGVVMDTLLAD 494 Query: 101 RSNGLP--SALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 L+ + + L + E + Sbjct: 495 YLRDANAKHGLEVLAQRNLGFTPTSYGEL----------------VPKGASFAAVPVEAA 538 Query: 158 GEYCKGDVTVTREIFKRLEPLSSK------------EQELWYLDQTINDRGYCVDVALAH 205 YC DV VTR + L + E L + + G +D A Sbjct: 539 ALYCGMDVHVTRRLSPLLRRQLEELGPSLPALLDGVELPLEPVLAQMEATGIRIDTAYLQ 598 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQ 260 L++ + +L+ E + + ++L LF GL + +T Sbjct: 599 ELSEELGATLARLEAEARAAAGV-EFNLASPKQLGELLFDTLGLDRKKSRRTKTGWSTDA 657 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRW 319 VL + P V +R S+ ++ L M + GR+ + TGR Sbjct: 658 NVLEKLEDDHPVVPLVLEHR-TLSKLKSTYVDALPSLMEPETGRVHTDFNQAV-TATGRL 715 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+P + S +R + EG L+ A Sbjct: 716 SSSNPNLQNIPIRTE-------------------------FSRRIRKAFLPQEGWSLISA 750 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R+L + GE+ ++A+ G+D++ T + VT D+R +GK + + Sbjct: 751 DYSQIELRILTHLCGEEVLVEAYRNGDDVHALTARLL--LDKEAVTPDERRLGKTINFGV 808 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y GA Q+ A TG++ + + + + F + + + Sbjct: 809 IYGMGA---QRFARETGVSQS--QAKDFLSRYKQRYPKVFAFLELQERLALSRGYVETIL 863 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 G R P + + Sbjct: 864 G-------------------------------------------RRRPFAFDPSGLGRHL 880 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 P ++ + Q R +Q S DI+ M++ + Sbjct: 881 GKDPM-------EIDLEVARRGGLEAQQLRAAANAP------IQGSSADIIKLAMVHLQQ 927 Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKR 672 A ++L VHDE+V E L M +PL E Sbjct: 928 ALSQQALPARLLLQVHDELVLEAAPEALDQVCDLTRQTMERAVQ--LTVPLVVETGVGPN 985 Query: 673 YR 674 + Sbjct: 986 WM 987 >gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421] gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421] Length = 942 Score = 362 bits (930), Expect = 9e-98, Method: Composition-based stats. Identities = 98/704 (13%), Positives = 190/704 (26%), Gaps = 165/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV--------------HD 50 D ET L + + F+ Sbjct: 367 AFDCETTGLNPL----------EAELAGFSLALKAEEAFYIPVKLPPPELQSQAPQPMPL 416 Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110 L + ++TI+ HN F+ ++ + T++ A Sbjct: 417 EKAVSELARLWQQKNLTIIMHNGKFDYQAMRTAGVFEKTPCAIFDTMIAAWLLDPDRT-- 474 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 S + IA + + Y D +T + Sbjct: 475 ---SFSLDSLASSLLKLQTIAYKDVVPKGKI-------FSDVPYEQAVAYAAEDADITLQ 524 Query: 171 IFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ L P + L L + G + ++ + E ++ Sbjct: 525 FYEFLLPKLKEYGLFDLFQTLEMPLLPLLAEMEIAGIFLKKEELAEFSEELGKEIIVHER 584 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277 E+ + + ++L+ LF E L T+ +T VL ++ Sbjct: 585 EIFDIVGH-EFNIASPKQLQEVLFTELKLPTGKKTKTGYSTDTSVLEVLASEHVIPAKIL 643 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R ++ + L + +GR+ + G + TGR S QN+P + Sbjct: 644 EYR-ALTKLKSTYTDALPALADKNGRVHTSFIQTG-TATGRLSSRDPNLQNIPIRDEAGR 701 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R A +GK L+ AD A IE +LA ++ ++ Sbjct: 702 R-------------------------IRKAFQAEKGKNLISADYAQIELVILAHLSQDKN 736 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF+ G D++ T A F + +V D R I K + G+ Sbjct: 737 LVQAFQEGTDVHAATAALIFGMPIGEVLPDMRRIAKTINF--------------GVMYGM 782 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + ++ + + + +S V Sbjct: 783 SAFRLSNA------------------------------LRIPRRQAADFIETYFKTYSGV 812 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 EL ++ + + GR + + Sbjct: 813 HIFMEELKESARR--------------------------KGYVETLMGRRRYIYAINSAN 846 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631 R +Q + DI+ M+ K ++L VHDE Sbjct: 847 KLE---QAGAERVAINTP------IQGSAADIVKTAMLKVQNALQAHKLQAKLLLQVHDE 897 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++CE P+ + +L M S +PL+ K + Sbjct: 898 LICEAPEKETETVKTLLRQEMESVVKLL--VPLRVNIESGKTWG 939 >gi|56477692|ref|YP_159281.1| DNA polymerase I [Aromatoleum aromaticum EbN1] gi|56313735|emb|CAI08380.1| DNA polymerase I [Aromatoleum aromaticum EbN1] Length = 908 Score = 362 bits (930), Expect = 9e-98, Method: Composition-based stats. Identities = 106/706 (15%), Positives = 193/706 (27%), Gaps = 166/706 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51 + D ET S + ++ +F + H Sbjct: 331 DLVAFDTETTSLDQMA----------AKLVGMSFAIVEGEAAYLPLAHIYPAAPAQLPLA 380 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSN--GLPSA 108 + LK LE+ + N ++ VL + + TL+ + P Sbjct: 381 EVLAKLKPWLESDAHPKLGQNLKYDAHVLANH---GLRLGGIAHDTLLQSYVLESDRPHD 437 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + ++ + G + I + A EY D +T Sbjct: 438 MDSLAKRH--------LGIDTIPY----TAVCGKGVGQICFDQVAIERATEYAAEDADIT 485 Query: 169 REIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + ++L P E + + G +D L ++ + Sbjct: 486 LRLHRKLWPQLEAAPALAALYRDIEMPAMAVLFDMERTGVLIDAFLLAQQSEELGRRLMT 545 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273 L++E L + ++L LF + GL + T +T + VL+ P Sbjct: 546 LEREAHDLAGQP-FNLGSPKQLGEILFGKLGLPVVKKTATGQPSTDEEVLAQLADDYPLP 604 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + +R S+ + L +N GR+ + A TGR + QN+P Sbjct: 605 KLLLEHR-GLSKLKSTYTDKLPRMVNAKTGRVHTSFSQAVA-VTGRLASSEPNLQNIPIR 662 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +R+ IA +V AD + IE R++A + Sbjct: 663 TAEGRR-------------------------IRAAFIAPRDHVIVSADYSQIELRIMAHL 697 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + L++F GED++ T A F + P +VT +QR KV+ L Y A Sbjct: 698 SSDARLLQSFAEGEDVHRATAAEIFGMTPGEVTSEQRRYAKVINFGLIYGMSAHGL---- 753 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 L L A + + + + + G R Sbjct: 754 -AKNLGLERAAAAAYIDRYFARYPGVAAYMERTRSEARARGYVETVYGR---------RL 803 Query: 513 KHSRVSE----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +A G A K+ + Sbjct: 804 YLPEIRASQAGRRQAAERAAINAPMQGTAADLIKKAMI---------------------- 841 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 TR+ + +L + +VL Sbjct: 842 --------------ATRRWLADAALRSRLV----------------LQVHDE---LVL-- 866 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P + + L LMT +PL E + + Sbjct: 867 ------EVPRDELETVRATLPGLMTGIAD--LSVPLLVEVGHGENW 904 >gi|223888854|ref|ZP_03623445.1| DNA polymerase I family protein [Borrelia burgdorferi 64b] gi|223885670|gb|EEF56769.1| DNA polymerase I family protein [Borrelia burgdorferi 64b] Length = 908 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 203/700 (29%), Gaps = 162/700 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54 + ID ET S T +I + F + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112 Q E+ + I+ N F+ +LK IP + T++ A +L + Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K K + +++I +N + + Y D +T +F Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492 Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + E + + + G +D + + E ++ E+ Sbjct: 493 NIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEI 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + L L + + +T +VL S ++ + R Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L+E +N T + TGR + QN+P + Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R G + AD + IE +LA ++ ++ +K Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE +D++ T ++ F + ++T + R I K + ++ Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A E + ++ + ++ E Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 R +++ +N Sbjct: 782 IINQINFVRNA--------------------------GYSETILKRRRYIKEINSNNYLE 815 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 + R +I+Q + DI+ M+ K I+L VHDE++ Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+P +E + +M ++ LPL+A K + Sbjct: 867 ESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905 >gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A] gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A] Length = 955 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 212/704 (30%), Gaps = 151/704 (21%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHDP-------VMP 54 + D ET + ++ + + + + H + Sbjct: 367 IAWDTETTGLNP----------QTAKLVGISCCWGEEVNNIAYIPIEHKEGEQLSKEKVL 416 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112 + L+ LEN V N+ F+R VL + + T++ + L ++ Sbjct: 417 EKLRPILENKCYPKVFQNAKFDRLVLLNQ-GIQLN-GVVFDTMLASYVINPDKSHKLSSL 474 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + + + I + + YC D T + Sbjct: 475 CKQYLTNISSQDYLELKIN-------------KQQTIADLDITQVANYCGMDAYSTFLLV 521 Query: 173 KRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 K L+ EQ L + + ++G +D+ + L++ V L+++ Sbjct: 522 KPLKKRLAEIPILEKLFLEVEQSLEKVLSKMENQGILIDIEYLNNLSEQNKVNLLCLEEK 581 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQV 276 + + ++L LF L + + +T +L K P + Sbjct: 582 IYE-EAKEKFNLESPKQLSKILFENLQLSTKKSKKITTGYSTNHAILEKLKGDHPIIDYL 640 Query: 277 FNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R S+ ++ L + N R+ + + TGR S QN+P + Sbjct: 641 LKYR-TLSKLQSTYIDNLPTLVSNQTHRIHTSFNQSV-TSTGRLSSSKPNLQNIPIRTE- 697 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +S +R I+ + LV AD + IE R+LA ++ E Sbjct: 698 ------------------------LSRKIRKAFISPKKWLLVSADYSQIELRILAHLSQE 733 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +KA+ +D++ + F ++T ++R +GK + + Y G++ F + A Sbjct: 734 PLLVKAYCDCQDIHTLSAQLLF--DKEEITIEERNLGKTINFGVIYGMGSQRFAREA--- 788 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + + ++ F ++ +G + + + Sbjct: 789 --GVTPTKGKDFIKKYHQRYKKVFQFLENLKIEAITKGYVTTILGR------RRYFNFY- 839 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 NL P ++ Sbjct: 840 ------------------------------------SDSLRNLYGCNPD-------EINL 856 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDE 631 + + + QL R +Q S DI+ M+ K ++L VHDE Sbjct: 857 DELKYSYSDSQLLRSAANAP------IQGSSADIIKVAMIKIEKLLRNYQAKLLLQVHDE 910 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 +V E P + + +M ++ +PL E + Sbjct: 911 LVFEIPLEELEELQSEIKQIMENSVK--LTIPLLVEINSGINWM 952 >gi|149198195|ref|ZP_01875242.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera araneosa HTCC2155] gi|149138797|gb|EDM27203.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera araneosa HTCC2155] Length = 1036 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 99/691 (14%), Positives = 207/691 (29%), Gaps = 148/691 (21%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---PVMPQVLKEA 60 + D ET ++ DH D + + +K Sbjct: 469 VSFDTETTGLD----------VRSATIVGLGLAIRDHHAWYIPFNSDLDKEEILKEIKPF 518 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-GEALKLS 119 ++ + A N+ F+ +L +++ TLV + + +L Sbjct: 519 FADSSLKFFAQNAKFDLQML-HYAGIEVKNID-FDTLVASFICNPSRQFHDLDSLSLHYL 576 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + + + LI + YC DV +T + LE Sbjct: 577 NYRKISTESLI----------GKGKKQISMADLPVERVATYCCEDVDITLRLRNELEAEL 626 Query: 180 ----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + L + + + G +++ ++ E K ++++ +L Sbjct: 627 HRRDLRNLFDEMDIPLIPVLSKMENNGISINLGTLEKISSDFSAELKKCEEQIHALAGH- 685 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + +++ LF E GL T +T VL + + + +R S+ Sbjct: 686 EFNINSPKQVGVVLFEEMGLKAGKKTATGYSTSAEVLENLAAESEIVRAILRHR-TLSKL 744 Query: 287 AVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + L + ++ D R+ A+ TGR + QN+P + + Sbjct: 745 ISTYADALPKEVSELDQRIHTRFSQTTAA-TGRLASTQPNLQNIPTRTAEGK-------- 795 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +RS A EG + D + IE R++A ++ + L+AF Sbjct: 796 -----------------SIRSAFQAPEGHHFISCDYSQIELRIMAELSQDPGLLEAFNND 838 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D++ T + F ++VTK QR K + + + G + ++ Sbjct: 839 FDVHTHTASLVFETELSEVTKQQRYAAKAVNFGIMFGQGP-----YGLAKEIGVSADEAK 893 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 ++ + + D + F E+ + + Sbjct: 894 QFISNYFKRYPDVQKFMAKCVEDARDKGYSET---------------------------- 925 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 +RR +P + +GR + + S + T Sbjct: 926 -------------SFGRRRYLPEMLSS-----------NGRIRSGAERISVNSPIQGTAA 961 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--GYDIVLTVHDEIVCETPDTDEFN 643 + + ++ K ++L +HDE++ E PD + Sbjct: 962 DIIKIA-----------------MIKVA-DELEKRQLKSKMLLQIHDELLFEVPDDELEI 1003 Query: 644 ASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 L +MT P +PLK + +K + Sbjct: 1004 MKELIPQIMTDIPQ--IKVPLKVDCAAAKSW 1032 >gi|224532705|ref|ZP_03673322.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23] gi|224512323|gb|EEF82707.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23] Length = 908 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 203/700 (29%), Gaps = 162/700 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54 + ID ET S T +I + F + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112 Q E+ + I+ N F+ +LK IP + T++ A +L + Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K K + +++I +N + + Y D +T +F Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492 Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + E + + + G +D + + E ++ E+ Sbjct: 493 NIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEI 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + L L + + +T +VL S ++ + R Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L+E +N T + TGR + QN+P + Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R G + AD + IE +LA ++ ++ +K Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE +D++ T ++ F + ++T + R I K + ++ Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A E + ++ + ++ E Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 R +++ +N Sbjct: 782 IINQINFVRNA--------------------------GYSETILKRRRYIKEINSNNYLE 815 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 + R +I+Q + DI+ M+ K I+L VHDE++ Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+P +E + +M ++ LPL+A K + Sbjct: 867 ESPIEEENEVKKILKIMMET-AYILNLPLRANIETGKSWG 905 >gi|312148136|gb|ADQ30795.1| DNA polymerase I superfamily [Borrelia burgdorferi JD1] Length = 908 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 204/700 (29%), Gaps = 162/700 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54 + ID ET S T +I + F + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112 Q E+ + I+ N F+ +LK IP + T++ A +L + Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K K + +++I +N + + Y D +T +F Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492 Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + E + + + G +D + + E ++ E+ Sbjct: 493 NLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEI 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + L L + + +T +VL S ++ + R Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L+E +N T + TGR + QN+P + Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R G + AD + IE +LA ++ ++ +K Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE +D++ T ++ F + ++T + R I K + ++ Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A E + ++ + ++ E Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + R +++ +N Sbjct: 782 IINQINFVKNA--------------------------GYSETILKRRRYIKEINSNNYLE 815 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 + R +I+Q + DI+ M+ K I+L VHDE++ Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+P +E + +M ++ LPL+A K + Sbjct: 867 ESPIEEENEVKKILKIMMET-AYILNLPLRANIETGKSWG 905 >gi|50118986|ref|YP_048153.1| DNA polymerase I [Pectobacterium atrosepticum SCRI1043] gi|49609512|emb|CAG72945.1| putative DNA polymerase I [Pectobacterium atrosepticum SCRI1043] Length = 929 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 106/697 (15%), Positives = 200/697 (28%), Gaps = 153/697 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54 D ET LT +I +F HD + Sbjct: 354 AFDTETDGLDTLT----------ANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRAQVL 403 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 + K LE+ + + N F++ V++ ++D+ T++ + + + Sbjct: 404 ALFKPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIA-FDTMLESYVLDSVAGRHDMDS 461 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT + Sbjct: 462 LAERY------------LKHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLHL 509 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L L + I G +D A+ ++ + L+ Sbjct: 510 HQTLWGKLQPHADLCQVFQAIDMPLVPVLSRIERTGVLIDPAILAEHSKELTTRLAGLET 569 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L +T + VL+ P + Sbjct: 570 QAYELAG-EEFNLASTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPLPKLI 628 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N + T + TGR S QN+P + Sbjct: 629 LEYR-GLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEG 687 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IAS+G +V AD + IE R++A ++G++ Sbjct: 688 RR-------------------------IRQAFIASKGYSIVAADYSQIELRIMAHLSGDK 722 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G D++ T + F +A +VT +QR K + L Y A + Sbjct: 723 GLLNAFANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSA-----FGLSRQ 777 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 LN+ N E + +++ ++ EH G R +R Sbjct: 778 LNIPRSESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMAR 837 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 +A G A K+ + + + L Sbjct: 838 -----KGAERAAINAPMQGTAADIIKKAMISIDDWLQKDTPL------------------ 874 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 + I+Q +V +HD ++ Sbjct: 875 ---------------------VKMIMQ-------------VHDE---LVFEIHDSVI--- 894 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + S + LM +PL+ + + Sbjct: 895 ----EESISKIKILMEGCMQ--LNVPLQVDIGTGMNW 925 >gi|195941682|ref|ZP_03087064.1| DNA polymerase I (polA) [Borrelia burgdorferi 80a] Length = 908 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 201/700 (28%), Gaps = 162/700 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54 + ID ET S T +I + F + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112 Q E+ + I+ N F+ +LK IP + T++ A +L + Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K K + +++I +N + + Y D +T +F Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492 Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 E + + + G +D + + E ++ E+ Sbjct: 493 NLFTKKLKEDKLDRLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELIENEI 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + L L + + +T +VL S ++ + R Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKIKKDSTDIKVLESLREQHESIENLIKYR 611 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L+E +N T + TGR + QN+P + Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R G + AD + IE +LA ++ ++ +K Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE +D++ T ++ F + ++T + R I K + ++ Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A E + ++ + ++ E Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 R +++ +N Sbjct: 782 IINQINFVRNA--------------------------GYSETILKRRRYIKEINSNNYLE 815 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 + R +I+Q + DI+ M+ K I+L VHDE++ Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+P +E + +M ++ LPL+A K + Sbjct: 867 ESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905 >gi|171321673|ref|ZP_02910595.1| DNA polymerase I [Burkholderia ambifaria MEX-5] gi|171093053|gb|EDT38279.1| DNA polymerase I [Burkholderia ambifaria MEX-5] Length = 917 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 115/700 (16%), Positives = 199/700 (28%), Gaps = 160/700 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + +T ++ +F + H + Sbjct: 343 AFDTETTALDPMT----------ARLVGLSFSIEPGKAAYLPVAHRGPDLPEQLPIDDVL 392 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L+ LE+ D V + ++ VL + + TL+ + Sbjct: 393 ARLRPWLESADRKKVGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 450 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + A Y D +T ++ + Sbjct: 451 ALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALEQAAAYAAEDADITLQLHQA 500 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D AL + + +L+ + Sbjct: 501 LYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAY 560 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + T + T + VL + P + + Sbjct: 561 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 619 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ + L +N GR+ A TGR + QN+P + Sbjct: 620 R-GLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTAEGRR 677 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IAS G ++V AD + IE R++A ++G+ Sbjct: 678 -------------------------IREAFIASPGHRIVSADYSQIELRIMAHISGDASL 712 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF GED++ T A F V P +V DQR I KV+ L Y A + L Sbjct: 713 LRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSA-----FGLASNLG 767 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + A + + + + + E + G R ++ Sbjct: 768 ITRDAAKLYIDRYFTRYPGVAQYMEDTRTTAKEKGYVETVFGR---------RLWLPEIN 818 Query: 519 E----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +A G A K + + Sbjct: 819 GGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLTR-------------------- 858 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 D LA M+ + VHDE+V Sbjct: 859 ---------------------------------DQLASRMI----------MQVHDELVL 875 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E PD + L +M +PL AE + Sbjct: 876 EVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913 >gi|221218069|ref|ZP_03589535.1| DNA polymerase I family protein [Borrelia burgdorferi 72a] gi|224533585|ref|ZP_03674174.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a] gi|221192017|gb|EEE18238.1| DNA polymerase I family protein [Borrelia burgdorferi 72a] gi|224513258|gb|EEF83620.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a] Length = 908 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 204/700 (29%), Gaps = 162/700 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54 + ID ET S T +I + F + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112 Q E+ + I+ N F+ +LK IP + T++ A +L + Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K K + +++I +N + + Y D +T +F Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492 Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + E + + + G +D + + E ++ E+ Sbjct: 493 NIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEI 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + L L + + +T +VL S ++ + R Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L+E +N T + TGR + QN+P + Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R G + AD + IE +LA ++ ++ +K Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE +D++ T ++ F + ++T + R I K + ++ Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A E + ++ + ++ E Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + R +++ +N Sbjct: 782 IINQINFVKNA--------------------------GYSETILKRRRYIKEINSNNYLE 815 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 + R +I+Q + DI+ M+ K I+L VHDE++ Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+P +E + +M ++ LPL+A K + Sbjct: 867 ESPIEEENEVKKILKIMMET-AYILNLPLRANIETGKSWG 905 >gi|225549672|ref|ZP_03770638.1| DNA polymerase I family protein [Borrelia burgdorferi 118a] gi|225369949|gb|EEG99396.1| DNA polymerase I family protein [Borrelia burgdorferi 118a] Length = 908 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 204/700 (29%), Gaps = 162/700 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54 + ID ET S T +I + F + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112 Q E+ + I+ N F+ +LK IP + T++ A +L + Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K K + +++I +N + + Y D +T +F Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492 Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + E + + + G +D + + E ++ E+ Sbjct: 493 NIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEI 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + L L + + +T +VL S ++ + R Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L+E +N T + TGR + QN+P + Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R G + AD + IE +LA ++ ++ +K Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE +D++ T ++ F + ++T + R I K + ++ Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A E + ++ + ++ E Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + R +++ +N Sbjct: 782 IINQINFVKNA--------------------------GYSETILKRRRYIKEINSNNYLE 815 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 + R +I+Q + DI+ M+ K I+L VHDE++ Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+P +E + +M ++ LPL+A K + Sbjct: 867 ESPIEEENEVKKILKIMMET-AYILNLPLRANIETGKSWG 905 >gi|216263573|ref|ZP_03435568.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1] gi|215980417|gb|EEC21238.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1] Length = 908 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 100/700 (14%), Positives = 202/700 (28%), Gaps = 162/700 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54 + ID ET S + Y +I + F + + Sbjct: 341 KYISIDTETSS--------LDIYT--ARLIGISISFKEFEGYYIPIEAKGKIYIEKHYII 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112 Q E+ + I+ N F+ +LK IP + T++ A +L + Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFL 447 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K K + +++I +N + + Y D +T +F Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492 Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 E + + + G +D + + E ++ E+ Sbjct: 493 NIFTKKLKEDGLDKLMHEVEMPFNNVIIEMEENGIYLDREYLKEYGKELGQELELIENEI 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + L L + + +T +VL S + +R Sbjct: 553 IKSIGI-NFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLIGQHESIENIIKHR 611 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L+E +N T + TGR + QN+P + Sbjct: 612 Q-IAKLKSTYTDNLIELINHKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R G + AD + IE +LA ++ ++ +K Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIK 705 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE +D++ T ++ F + ++T D R I K + ++ Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPDLRRIAKSIN--------------FGIIYRMSDF 751 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A E + ++ + ++ E Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 T R +++ +N Sbjct: 782 ITNQINFVRNT--------------------------GYSETILKRRRYIKEINSNNYLE 815 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 + R +I+Q + DI+ M+ K I+L VHDE++ Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVRVFNEFKSKKMESKILLQVHDEMLI 866 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+P ++ + +M ++ LPL+A K + Sbjct: 867 ESPIKEKNEVEKILKIMMET-AYTLNLPLRANIETGKSWG 905 >gi|312149051|gb|ADQ29122.1| DNA polymerase I superfamily [Borrelia burgdorferi N40] Length = 908 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 204/700 (29%), Gaps = 162/700 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54 + ID ET S T +I + F + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112 Q E+ + I+ N F+ +LK IP + T++ A +L + Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K K + +++I +N + + Y D +T +F Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492 Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + E + + + G +D + + E ++ E+ Sbjct: 493 NIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEI 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + L L + + +T +VL S ++ + R Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L+E +N T + TGR + QN+P + Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R G + AD + IE +LA ++ ++ +K Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE +D++ T ++ F + ++T + R I K + ++ Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A E + ++ + ++ E Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + R +++ +N Sbjct: 782 IINQINFVKNA--------------------------GYSETILKRRRYIKEINSNNYLE 815 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 + R +I+Q + DI+ M+ K I+L VHDE++ Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+P +E + +M ++ LPL+A K + Sbjct: 867 ESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905 >gi|226320515|ref|ZP_03796080.1| DNA polymerase I family protein [Borrelia burgdorferi 29805] gi|226234079|gb|EEH32795.1| DNA polymerase I family protein [Borrelia burgdorferi 29805] Length = 908 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 202/700 (28%), Gaps = 162/700 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54 + ID ET S T +I + F + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGCYIPIEAKGKIYIEKNYII 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112 Q E+ + I+ N F+ +LK IP + T++ A +L + Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K K + +++I +N + + Y D +T +F Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492 Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 E + + + G +D + + E ++ E+ Sbjct: 493 NLFTKKLKEDKLDRLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELIENEI 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + L L + + +T +VL S ++ + R Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L+E +N T + TGR + QN+P + Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R G + AD + IE +LA ++ ++ +K Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE +D++ T ++ F + ++T + R I K + ++ Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A E + ++ + ++ E Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + R +++ +N Sbjct: 782 IINQINFVKNA--------------------------GYSETILKRRRYIKEINSNNYLE 815 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 + R +I+Q + DI+ M+ K I+L VHDE++ Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+P +E + +M ++ LPL+A K + Sbjct: 867 ESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905 >gi|15594893|ref|NP_212682.1| DNA polymerase I (polA) [Borrelia burgdorferi B31] gi|6225284|sp|O51498|DPO1_BORBU RecName: Full=DNA polymerase I; Short=POL I gi|2688462|gb|AAC66909.1| DNA polymerase I (polA) [Borrelia burgdorferi B31] Length = 908 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 203/700 (29%), Gaps = 162/700 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54 + ID ET S T +I + F + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112 Q E+ + I+ N F+ +LK IP + T++ A +L + Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K K + +++I +N + + Y D +T +F Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492 Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + E + + + G +D + + E ++ E+ Sbjct: 493 NIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEI 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + L L + + +T +VL S ++ + R Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L+E +N T + TGR + QN+P + Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R G + AD + IE +LA ++ ++ +K Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE +D++ T ++ F + ++T + R I K + ++ Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A E + ++ + ++ E Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 R +++ +N Sbjct: 782 IINQINFVRNA--------------------------GYSETILKRRRYIKEINSNNYLE 815 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 + R +I+Q + DI+ M+ K I+L VHDE++ Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+P +E + +M ++ LPL+A K + Sbjct: 867 ESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905 >gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841] gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841] Length = 1016 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 103/716 (14%), Positives = 200/716 (27%), Gaps = 167/716 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---------VELWDCVHDP--- 51 + D ET S A ++ F+ D+ VH Sbjct: 418 VAFDTETTSLD----------AMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVG 467 Query: 52 ---------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 LK LE+ + VA N ++ ++K I + T Sbjct: 468 DLLGGGLAENQIPMGDALARLKALLEDESILKVAQNLKYDYLLMKRY---GIETRSFDDT 524 Query: 97 LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 ++++ + + E G I + N Sbjct: 525 MLISYVLDAGTGAHGMDPLSEKF--------LGHTPIPY----KDVAGSGKANVTFDLVD 572 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVAL 203 Y D VT ++ L+P E+ L + + RG VD + Sbjct: 573 IDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQI 632 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTC 259 L+ + +L+ E+ L + ++L LF + GL T+ +T Sbjct: 633 LSRLSGELAQSAARLEDEIYVLAG-ERFNIGSPKQLGDILFGKMGLSGGSKTKTGQWSTS 691 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 +VL + + + + ++ + L ++ + + T L ++ TGR Sbjct: 692 AQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRL 751 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+P + + +R+ I++ G KL+ A Sbjct: 752 SSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHKLISA 786 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA +A KAFE G D++ T + F V + + R K + + Sbjct: 787 DYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGI 846 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y A L++ E + ++ + + + Sbjct: 847 IYGISA-----FGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF 901 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 G R + V +A G A +R + + + Sbjct: 902 GRRINYP--EIRSSNPSVRAFN---ERAAINAPIQGSAADVIRRAMIKIEPALVEVGL-- 954 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 D + ++ Sbjct: 955 -----------------------------------------------ADRVRM-LLQVHD 966 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++ V DE E ++ +M + P+ +PL+ + + + Sbjct: 967 E---LIFEVEDE-------DVEKAMPVIVSVMENATMPALEMRVPLRVDARAATNW 1012 >gi|75906804|ref|YP_321100.1| DNA polymerase I [Anabaena variabilis ATCC 29413] gi|75700529|gb|ABA20205.1| DNA polymerase A [Anabaena variabilis ATCC 29413] Length = 977 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 104/702 (14%), Positives = 201/702 (28%), Gaps = 152/702 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVH-------DPVMPQVL 57 D ET D ++ + H ++ L Sbjct: 391 DTETSGLEP----------RDAALVGIGCCWGTEADASAYIPLAHTKGENLSQDIVLTAL 440 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG-E 114 + LE+ D N+ F+R V +++ ++ + L + Sbjct: 441 RPILESADYPKTFQNAKFDRLVFL-VQGINL-TGVVFDPMLASYVLNPDTSHNLTDLTQR 498 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L L+ Q + + K YC V T ++ + Sbjct: 499 YLGLTIQNYVDL----------------VPKGKTIADINISAVANYCCLQVYATFQLVAK 542 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L EQ L + T+ G +D A H L+Q ++++ KL ++ Sbjct: 543 LREELAKTPNLDKLLREVEQPLESVLATVEYTGVRIDSAYLHELSQQLEIDLAKLQEQAT 602 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLTPQ-AIQVF 277 L + ++L LF + GL + +T L +++ + Sbjct: 603 ELAG-EKFNLGSPKQLSYILFEKLGLSTKYSRKIQTGYSTDAATLEKLQEVDETGFVNAI 661 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 S+ ++ L + D + T A+ TGR S QN+P + Sbjct: 662 TEYRTLSKLKSTYVDALPALVRPDTQRVHTDFNQTATSTGRLSSSNPNLQNIPIRTA--- 718 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 S +R + G + AD + IE R+LA ++ E Sbjct: 719 ----------------------FSRQIRKAFLPKSGWLMAAADYSQIELRILAHLSQEPL 756 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++A++ ED++ T F + D+R I K + + Y G+ F + Sbjct: 757 LVQAYQQNEDIHTVTAKLVF--EKDDINSDERRIAKTINFGVIYGMGSLKFSR-----ST 809 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 ++ E + + +++ + +G + + Sbjct: 810 GIDKNVANEFIKRFNERYAKIFAYLEGVKKQAISLGYVETILGR------RRYFN----- 858 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 D + K N + L + Sbjct: 859 --------------------------FDSTSLLNLKGSNPEDIDL------------SKL 880 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHDEIV 633 L L R +Q S DI+ M+ K ++L VHDE+V Sbjct: 881 KNLGAKDAGLLRSAANAP------IQGSSADIIKIAMVQIHEVLKKYQARLLLQVHDELV 934 Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E P + + +M + +PL + + + Sbjct: 935 FEVPPQEWAELQPQIKSVMENAVK--LSVPLVVDVRAGENWM 974 >gi|83814085|ref|YP_445755.1| DNA polymerase I [Salinibacter ruber DSM 13855] gi|83755479|gb|ABC43592.1| DNA polymerase I [Salinibacter ruber DSM 13855] Length = 926 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 110/698 (15%), Positives = 202/698 (28%), Gaps = 162/698 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDPVMPQVLKE 59 D E S +T ++ +F + + VL Sbjct: 358 AFDAEATSRDPMT----------ADLVGLSFSSEAERATYVPTPLPDDTPTDAVLDVLGP 407 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALK 117 L D + HN ++ +LK +++ T+V L V + Sbjct: 408 VLAR-DTEKLGHNLKYDLLLLKQH-GVEV-GGTLFDTMVAHYLVAPEENHNLDDVARS-- 462 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + + KM +LI Y D ++ + LE Sbjct: 463 VLNYKMVPIADLI----------GDETDRDSMREVEVETAAPYACEDADISYRLADELEA 512 Query: 178 LSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 L ++ T+ G +D + + ++ + +++E+ L Sbjct: 513 QLEDGNVLDVAHDIEFPLVHVLATMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFELAG 572 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + ++L LF + L + T +T + VL V + Sbjct: 573 -EEFNINSTQQLGEILFEKLDLPVVSKTPTGKPSTKESVLQELSTEHEIPGLVL-DWRST 630 Query: 284 SRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + L++L E ++ + GRL + + TGR S QN+P + Sbjct: 631 YKLKSTYLDSLGELVHPETGRLHTSFNQTR-TATGRLSSSDPNLQNIPIRTEMGR----- 684 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R + +G L+ AD A IE R+LA M+G+ F Sbjct: 685 --------------------QIRRAFVPKDGWALLSADYAQIELRILAAMSGDDAMRATF 724 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + G D++ AR + + P VT +QR+ K + G++ Sbjct: 725 QEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNY--------------GIPYGISPWGL 770 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + + K +R+ + VS+L N Sbjct: 771 AQR------------------------------MRMPVDEAQDIIKQYRKSYPGVSQLLN 800 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 EL E+ + G A GR D+ ++ S Sbjct: 801 EL---VEKAQDKGYAETLL-----------------------GRRRYLPDIDSSNS---N 831 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCET 636 R +Q D++ M ++L VHDE+V E Sbjct: 832 ARSAAERVA------VNMPIQGTQADMIKIAMNRIHDRLAGDDWATQMLLQVHDELVFEV 885 Query: 637 PDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P + A M+ M +P+ + + Sbjct: 886 PPDELDAAQTMIDDEMRDALPL-DDVPVTVDMDTGDNW 922 >gi|87308014|ref|ZP_01090156.1| DNA polymerase I [Blastopirellula marina DSM 3645] gi|87289096|gb|EAQ80988.1| DNA polymerase I [Blastopirellula marina DSM 3645] Length = 880 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 100/699 (14%), Positives = 195/699 (27%), Gaps = 149/699 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--------M 53 L D ET S ++ +F +D + Sbjct: 297 KRLSFDTETTSTNP----------RWADLVGISFSWDQGEGVYIPIRSPEGDVKLDESLV 346 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALK 110 + L+ LEN+ + V N ++ VL +++ T+V L Sbjct: 347 LEKLRPILENSAIEKVGQNLKYDLVVL-RGVGVNVRGAS-FDTMVAHYLLEAGARSHGLD 404 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + L+ + + ELI + G Y D + Sbjct: 405 ELS--LRYLQHETVKISELI----------GTGKNQIRMDQVPVDKVGYYAAEDADIPLR 452 Query: 171 IFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E L + + G VDV + L++ L++ Sbjct: 453 LDPILSERIEAEGLGDLLTDVELPLIDVLVEMEFNGIRVDVERLNELSRQYGERMEVLER 512 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277 E+ L + ++L T LF E L + T+ +T VL K ++ Sbjct: 513 EIYQLAGRD-FNINSPKQLGTVLFDELNLPVIKKTKTGPSTDAEVLEQLAKQHDMPAKIV 571 Query: 278 NNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ ++ L + R+ + + A+ TGR S QN+P ++ Sbjct: 572 QFRQY-AKLKGTYVDALPVLICSKTDRVHTSFNQVVAA-TGRLSSNDPNLQNIPIRTQES 629 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395 E +RS I KL+ AD + IE RVLA +G+ Sbjct: 630 RE-------------------------IRSAFIPGTPDWKLLCADYSQIELRVLAHFSGD 664 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +++++ ED++ + + V QVT R K + + Y Sbjct: 665 PALMESYQKNEDIHARVASEVYGVPLDQVTSTHRRSAKAINFGVVYGQSP-----FGLAK 719 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L+++ ++ + + + + + +G R R Sbjct: 720 SLDIDKDEAYGFIDAYFKRYPGVDVLMEQILVDCQRDGYVRTILGR--RRAIDGVRTAD- 776 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ + + + ++ + ML R L Sbjct: 777 -------------KRDRLKRQLTMPERTAINTVIQGSAADIIKLAMLRVHRRL------- 816 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 + + ++ +V E Sbjct: 817 --EKEGSPAKL---------------------------LLQIHDE-----------LVFE 836 Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 TP + L M S + A +PL + + Sbjct: 837 TPPEYLEQLAQLVREEMESARNLA--IPLVVDIKSGDNW 873 >gi|226321854|ref|ZP_03797380.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26] gi|226233043|gb|EEH31796.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26] Length = 908 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 203/700 (29%), Gaps = 162/700 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54 + ID ET S T +I + F + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112 Q E+ + I+ N F+ +LK IP + T++ A +L + Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K K + +++I +N + + Y D +T +F Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492 Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + E + + + G +D + + E ++ E+ Sbjct: 493 NLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEI 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + L L + + +T +VL S ++ + R Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L+E +N T + TGR + QN+P + Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R G + AD + IE +LA ++ ++ +K Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE +D++ T ++ F + ++T + R I K + ++ Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A E + ++ + ++ E Sbjct: 752 RL------------------------------AKELRITKEEAKGFINSYFDSYPKIKEF 781 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 R +++ +N Sbjct: 782 IINQINFVRNA--------------------------GYSETILKRRRYIKEINSNNYLE 815 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 + R +I+Q + DI+ M+ K I+L VHDE++ Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+P +E + +M ++ LPL+A K + Sbjct: 867 ESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905 >gi|317504364|ref|ZP_07962348.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606] gi|315664486|gb|EFV04169.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606] Length = 920 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 99/693 (14%), Positives = 197/693 (28%), Gaps = 147/693 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLK 58 L +D ET S + + ++ F ++H +D + K Sbjct: 349 ILSLDTETTSTDAI----------EAELVGLCFAVEEHKAFYVAIPNDRKQALQYVNIFK 398 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 E+ + + N ++ VLK + + + T++ + + E L Sbjct: 399 SVYEDPSILKIGQNIKYDYEVLKNY-GVTLQ-GKMFDTMLAHYVLQPELRHNMDYMAETL 456 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K +ELI K A EY D +T ++ LE Sbjct: 457 --LNYKTIHIEELIG---------APGKHQKSMRDIAPEDAYEYGAEDADITLQLRNVLE 505 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P E L + + G VD A H +I +L++ + Sbjct: 506 PKLKEVAMEALFWDIETPLIPVLADMELNGVRVDTATLHDTAEIFTERMNRLERHIYEEA 565 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF + + T+T T + VL S + P + +R Sbjct: 566 G-ETFNIASPKQVGDILFGKLQIMEKPKKTKTGQYVTNEEVLQSLRAKNPIVEDILAHR- 623 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L + ++ + T + TGR S QN+P S +E Sbjct: 624 GLKKLLGTYVEALPKLIHKRTQHIHTSFNQALTATGRLSSSDPNLQNIPVRSEDGKE--- 680 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R C + G AD + IE R++A ++G++ ++A Sbjct: 681 ----------------------IRKCFVPEPGCLFFSADYSQIELRIMAHLSGDENMIEA 718 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G D++ T A+ ++ A VT ++R K + Y + ++ Sbjct: 719 FREGFDIHAATAAKIWHKQIADVTPEERKKAKQANFGIIYG-----ITTYGLAQRMGIDN 773 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + + + +E + Sbjct: 774 KEARMLIEDYFTTFPKVKAYMEQAKEEARQKGYAVTLF---------------------- 811 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 +RR +P + K + + Sbjct: 812 -------------------GRRRYLPDINSKNGTVRGFAERNA--------INAPIQGSE 844 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 ++ + ENI ++L VHDE+ ++ Sbjct: 845 ADIIKIAMIRIWQRFKAENI-------------------RSKMILQVHDELNFSVYPEEK 885 Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + M +PL A+ + Sbjct: 886 ERVEKIVLEEMQGACQ--LKVPLTADAGWGNNW 916 >gi|325970645|ref|YP_004246836.1| DNA polymerase I [Spirochaeta sp. Buddy] gi|324025883|gb|ADY12642.1| DNA polymerase I [Spirochaeta sp. Buddy] Length = 948 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 102/699 (14%), Positives = 206/699 (29%), Gaps = 164/699 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVL 57 D ET ++ VI F+F +++ VH+ + +L Sbjct: 382 AFDLETTGLDEML----------AQVIGFSFCWEEGKSYYVPLVHETKELVDREQVRSLL 431 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEA 115 +E L + +++V N ++ VL + + +P + + T+V A S + + E Sbjct: 432 EEYLGSGRLSLVGQNIKYDYKVL-RQWGI-MPKNIYFDTMVAAWLLDSTSVFNMDYLAEK 489 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + T D+ Y D VT ++K Sbjct: 490 Y-------------LDYKTVHYTDIVPKDKLLS--DIPLEQAVFYGAEDADVTFRLYKLF 534 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L E L + + G ++ L L+ + + ++ ++ Sbjct: 535 SELLGARNLRSLLDEVEMPLLVIIANMELAGIYLERKLIEPLSAEFEGRIDAIRNQIFAI 594 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L+ LF+E + T + T VL + P+ + R Sbjct: 595 CGHA-FNLNSPQQLQEVLFVERNIPTGAKTRSGFSTSTDVLEPLRDDYPEVELILQYR-T 652 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ ++ L +N + TGR S QN+P + Sbjct: 653 LNKLKTTYIDKLPLQINEKTHRIHPSFAQTGTETGRLSCKDPNLQNIPVRTEEGRR---- 708 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +RS + G + AD + IE VLA MA + AF Sbjct: 709 ---------------------IRSAFVPQAGHVFLSADYSQIELVVLAHMADDPGLKGAF 747 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ +T + F+V QVT QR I K + G+ Sbjct: 748 AAGIDVHSSTASLIFDVPLDQVTPVQRRIAKTIN--------------FGVMYGMG---- 789 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A++ + ++ + +++S V Sbjct: 790 --------------------------THSLAMDLKIPHSEAKQFIDQYFERYSSVRSFVE 823 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 +Q + G ++ + + Sbjct: 824 ATKTMSQQ--------------------------VGSVSTLLGHVRTITEINSRSAVER- 856 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCET 636 + R ++Q + DI+ M+ K G ++L +HDE++ E Sbjct: 857 --AKAERIA------VNTVIQGSAADIVKLAMLRVDSLLKQKKLGARLLLQIHDELIFEV 908 Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 P+ + E +++ + +PL+ + Sbjct: 909 PEAEIEETKAVVKEALEHAVK--LSVPLRTSIEVGSNWG 945 >gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400] gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400] Length = 918 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 109/698 (15%), Positives = 200/698 (28%), Gaps = 152/698 (21%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VM 53 + ID ET S Y E ++ +F + HD Sbjct: 341 IAIDTETTSLN---------YME-AELVGLSFATEAGKAAYLPLAHDYLDAPLQIDKASA 390 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAV 112 + L+ LE V N ++ ++L + + R T++ + ++ Sbjct: 391 LEKLRPILEGDTPQKVGQNLKYDMSILANA-GISLKGIR-FDTMLESYVFNSIASRHDMD 448 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 G ALK K +E + ++ + G Y D +T + Sbjct: 449 GLALKYLGHKNISFEE----------VAGKGAKQLTFNQVHLDIAGPYAAEDADITLRLH 498 Query: 173 KRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P KE L + + +G +D L + + + L+ + Sbjct: 499 QHLWPRLEKEPELASVFNELELPLIKVLSDVERQGVLIDSMLLSQQSGELAKKLDDLENK 558 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + + ++L+T F + G ++ T +T + VL P + Sbjct: 559 AYEI-AEEKFNLASPKQLQTLFFEKLGYPIKKKTPKGAPSTAEDVLIELALDYPLPKVIL 617 Query: 278 NNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R ++ + L +N + GR+ + A+ TGR S QN+P + Sbjct: 618 EHR-SLAKLKSTYTDKLPLMVNATTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEG 675 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA G+K++ AD + IE R++A ++ + Sbjct: 676 RR-------------------------IRQAFIAPAGRKILAADYSQIELRIMAHLSQDA 710 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G+D++ T A F V +VT +QR K + L Y A Sbjct: 711 GLLTAFAEGKDIHKATAAEVFGVHFEEVTTEQRRRAKAVNFGLIYGMSA-----FGLAKQ 765 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L++ ++ + + + E G + R R Sbjct: 766 LDIPRNEAQKYIDTYFARYPGVLKYMEETRAIAAELGYVSTLFGRRLYLPEINDRNAMRR 825 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 +A G A K+ + + + L Sbjct: 826 -----QAAERAAINAPMQGTAADIIKKAMIAIHQWINQDTQGEITL-------------- 866 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 I+Q +V V DE Sbjct: 867 ------------------------IMQ-------------VHDE---LVFEV-DE----- 880 Query: 637 PDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + LM S + L AE + Sbjct: 881 --AQAETLKTKVCDLMAQAAS--LDVTLLAEAGIGDNW 914 >gi|218249427|ref|YP_002375054.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7] gi|218164615|gb|ACK74676.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7] Length = 908 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 203/700 (29%), Gaps = 162/700 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54 + ID ET S T +I + F + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112 Q E+ + I+ N F+ +LK IP + T++ A +L + Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K K + +++I +N + + Y D +T +F Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492 Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + E + + + G +D + + E ++ E+ Sbjct: 493 NLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEI 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + L L + + +T +VL S ++ + R Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L+E +N T + TGR + QN+P + Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R G + AD + IE +LA ++ ++ +K Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEILIK 705 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE +D++ T ++ F + ++T + R I K + ++ Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A E + ++ + ++ E Sbjct: 752 RL------------------------------AKELRITKEEAKGFINSYFDSYPKIKEF 781 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 R +++ +N Sbjct: 782 IINQINFVRNA--------------------------GYSETILKRRRYIKEINSNNYLE 815 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 + R +I+Q + DI+ M+ K I+L VHDE++ Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+P +E + +M ++ LPL+A K + Sbjct: 867 ESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905 >gi|325577646|ref|ZP_08147921.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC 33392] gi|325160391|gb|EGC72517.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC 33392] Length = 932 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 107/701 (15%), Positives = 202/701 (28%), Gaps = 157/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51 +D ET + + ++ +F ++ + Sbjct: 356 KLFALDTETNNLDYMA----------ANLVGISFALENGEAAYLPLQLDYLGAPKTLEKT 405 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 +LK LEN + V N ++ T+ +D+ T++ + + Sbjct: 406 TALALLKPVLENPAIQKVGQNFKYDLTIFARN-GIDVQGVA-FDTMLESYVLNSTGRHNM 463 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G + I E ++ EY D VT Sbjct: 464 DDLAKRY--------LGHQTITF----EEIAGKGKNQLTFNQIPLEKAAEYAAEDADVTM 511 Query: 170 EIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L E L + + RG +D + + ++L Sbjct: 512 KLQQVLWEKLSKEPTLEKLFKEMELPLLGVLSRMERRGVLIDSDALFLQSNEIANRLSEL 571 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 +++ L + ++L+ LF + GL +T + VL Sbjct: 572 EEQAYVLAGQP-FNLASTKQLQEILFDKLGLPVIQKTPKGAPSTNEEVLEELAFSHELPK 630 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R S+ + L + +N T + TGR S QN+P + Sbjct: 631 VLVEHR-GLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 689 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA EG +V AD + IE R++A ++ Sbjct: 690 EGRR-------------------------IRQAFIAREGFTVVAADYSQIELRIMAHLSQ 724 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF G+D++ +T A F VA +VT +QR K + L Y A + Sbjct: 725 DQGLINAFTQGKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMSA-----FGLS 779 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L + + + + + F ++E + Sbjct: 780 RQLGIGRADAQSYMDLYFKRYPGVQTFMHDIREKAKAQGYVETLF--------------- 824 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +R +P + R V Sbjct: 825 --------------------------GRRLYLPDINSSNGM----------RRKAAERVA 848 Query: 575 NNRSYLNTTTRQLTREYTY-GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 N T + R KL + DI M+ + VHDE+V Sbjct: 849 INAPMQGTAADIIKRAMIQLDQKLQNDP------DI---AMI----------MQVHDELV 889 Query: 634 CETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + EF + ++ M S +PL + + + Sbjct: 890 FEVRSEKVEFYSKLIKTHMESAADLV--VPLIVDVGQGTNW 928 >gi|301154826|emb|CBW14289.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Haemophilus parainfluenzae T3T1] Length = 932 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 107/701 (15%), Positives = 204/701 (29%), Gaps = 157/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51 +D ET + + ++ +F ++ + Sbjct: 356 KLFALDTETDNLDYMA----------ANLVGISFALENGEAAYLPLQLDYLGAPKTLEKT 405 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 +LK LEN + V N ++ T+ +D+ T++ + + Sbjct: 406 TALTLLKPILENPTIQKVGQNFKYDLTIFARN-GIDVQGVA-FDTMLESYVLNSTGRHNM 463 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G + I+ E ++ EY D VT Sbjct: 464 DDLAKRY--------LGHQTISF----EEIAGKGKNQLTFNQIQLEQAAEYAAEDADVTM 511 Query: 170 EIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L E L + + RG +D + + ++L Sbjct: 512 KLQQVLWEKLSKEPTLEKLFKEMELPLLGVLSRMERRGVLIDSDALFLQSNEIANRLSEL 571 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274 +++ L + ++L+ LF + GL +T + VL Sbjct: 572 EEQAYVLAGQP-FNLASTKQLQEILFDKLGLPVIQKTPKGAPSTNEEVLEELAFSHELPK 630 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R S+ + L + +N T + TGR S QN+P + Sbjct: 631 VLVEHR-GLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 689 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA EG +V AD + IE R++A ++ Sbjct: 690 EGRR-------------------------IRQAFIAREGFTVVAADYSQIELRIMAHLSQ 724 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF G+D++ +T A F VA +VT +QR K + L Y A + Sbjct: 725 DQGLINAFTQGKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMSA-----FGLS 779 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L++ + + + + F ++E + Sbjct: 780 RQLSIGRADAQSYMDLYFKRYPGVQTFMHDIREKAKAQGYVETLF--------------- 824 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +R +P + R V Sbjct: 825 --------------------------GRRLYLPDINSSNGM----------RRKAAERVA 848 Query: 575 NNRSYLNTTTRQLTREYTY-GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 N T + R KL + DI M+ + VHDE+V Sbjct: 849 INAPMQGTAADIIKRAMIQLDQKLQNDP------DI---AMI----------MQVHDELV 889 Query: 634 CETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + EF + ++ M S +PL + + + Sbjct: 890 FEVRSEKVEFYSKLIKTHMESAADLV--VPLIVDVGQGTNW 928 >gi|78184270|ref|YP_376705.1| DNA polymerase I [Synechococcus sp. CC9902] gi|78168564|gb|ABB25661.1| DNA polymerase A [Synechococcus sp. CC9902] Length = 998 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 111/716 (15%), Positives = 209/716 (29%), Gaps = 165/716 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVHD----------- 50 + +D ET ++ + + + H Sbjct: 400 IAVDTETTDLNPFK----------AELVGVGVCWGEANDALAYIPIGHKPPSELSEATPP 449 Query: 51 -----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 + L L + N+ ++R +L L + I TL+ Sbjct: 450 QQLPLETVLMALSPWLASPQHPKALQNAKYDRLILLRH-GLTLN-GVVIDTLLADYLRDA 507 Query: 106 P--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 L + E + T+ L + + A YC Sbjct: 508 AAKHGLDLMSER---------------EFGFRPTTYGDLVGKKQTFADVAIEPASLYCGM 552 Query: 164 DVTVTREIFKRLEPLSSKE------------QELWYLDQTINDRGYCVDVALAHTLNQIV 211 DV VTR + +L Q L + + G +DV TL+ + Sbjct: 553 DVHVTRRLALQLRQTLQAMGPQLLPLLEGVEQPLEPVLAQMEATGIRIDVPYLKTLSDEL 612 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSN 266 +L+ + + + + ++L LF GL + T+ +T VL Sbjct: 613 GSTLNRLETDAKQVAEVD-FNLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVLEKL 671 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFP 325 + P V +R+ S+ ++ L + + GR+ + TGR S Sbjct: 672 ENDHPVVPLVLEHRV-LSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPN 729 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P + S +R + EG L+ AD + IE Sbjct: 730 LQNIPVRTE-------------------------YSRRIRKAFLPQEGWTLLSADYSQIE 764 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+L ++GE+ +A+ TG+D++ T + V+ D+R +GK + + Y GA Sbjct: 765 LRILTHLSGEEVLQEAYSTGDDVHALTARLL--LDKDDVSADERRLGKTINFGVIYGMGA 822 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 Q+ A TG++ + + + F + + +G Sbjct: 823 ---QRFARETGVS--SAEAKEFLTKYKQRYPKVFAFLELQERLALSRGYVETILG----- 872 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 R P + + L+ P Sbjct: 873 --------------------------------------RRRPFHFDRNGLGRLLGKDPL- 893 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620 ++ + + Q R +Q S DI+ M+ Sbjct: 894 ------EIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQAVLLSQG 941 Query: 621 -GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE+V E ++ + M + +PL E + + Sbjct: 942 IPARLLLQVHDELVLEVAPDALDTTRNLVVNTMENAVK--LSVPLVVETGVGRDWM 995 >gi|270265261|ref|ZP_06193523.1| DNA polymerase I [Serratia odorifera 4Rx13] gi|270040895|gb|EFA13997.1| DNA polymerase I [Serratia odorifera 4Rx13] Length = 933 Score = 361 bits (926), Expect = 3e-97, Method: Composition-based stats. Identities = 108/701 (15%), Positives = 203/701 (28%), Gaps = 160/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54 D ET LT +I +F HD + Sbjct: 357 AFDTETDGLDTLT----------ANLIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRAYVL 406 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 + LK LE+ V N F+ +L ++ + T++ + + + Sbjct: 407 ETLKPLLEDEKALKVGQNLKFDMGLLARY-DITLRGIA-FDTMLESYVLDSVGGRHDMDS 464 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + G + + E + ++ A Y D VT ++ Sbjct: 465 LSDRY--------LGHKTVTF----EEIAGKGKKQLTFNQIALEQAAPYAAEDADVTLQL 512 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + P E L + I G +D ++ T + + +L+ Sbjct: 513 HLAMWPQLKESAELLTVFNEIEMPLVPVLSHIERTGVLIDQSILATHSIELTKRLAELEI 572 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 573 QAHEL-AEEPFNLASTKQLQAILYEKQKLPVLKKTPGGAPSTNEEVLAELALDYPLPKVI 631 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ + L +N T + TGR S QN+P + Sbjct: 632 LEYR-GLAKLKTTYTDKLPLMINPFSGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEG 690 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA EG ++V AD + IE R++A ++ ++ Sbjct: 691 RR-------------------------IRQAFIAPEGYRIVAADYSQIELRIMAHLSQDE 725 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 LKAF G+D++ T A F V +VT +QR K + L Y A Sbjct: 726 GLLKAFAEGKDIHRATAAEVFGVQLDKVTGEQRRSAKAINFGLIYGMSA-----FGLARQ 780 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L + + E + + ++ E G R Sbjct: 781 LGIPRGEAQRYMDLYFERYPGVLEYMERTRQQAAEQGYVSTLDGR---------RLYLPD 831 Query: 517 VSE----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 VS +A G A KR + + + ++ ++ + Sbjct: 832 VSSSNGMRRKAAERAAINAPMQGTAADIIKRAMIEVDAWLQGQDEPLVRM---------- 881 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 I+Q +V +H E Sbjct: 882 ----------------------------IMQ-------------VHDE---LVFEIH-ES 896 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E ++ + LM ++ + A +PLK + + Sbjct: 897 VIEA------SSQRIRELMENSMTLA--VPLKVDVGVGANW 929 >gi|257092739|ref|YP_003166380.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045263|gb|ACV34451.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 922 Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 115/703 (16%), Positives = 200/703 (28%), Gaps = 162/703 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 +D ET S L ++ + HD + Sbjct: 344 ALDTETTSLDPLA----------ARIVGISLAVAPGEAAYLPLAHDYPGVPAQLPCDEVL 393 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP------SA 108 LK LE+ + + +++ VL + + R TL+ + Sbjct: 394 ARLKSWLESPGHAKIGQHLKYDQHVLANH-GIALAGVR-HDTLLQSYVLESGKDGVRGHD 451 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 L + G I E + A EY D + Sbjct: 452 LGQLATRH--------LGLATIPY----EALCGKGANQIGFEQVAIGQAAEYAAEDADLC 499 Query: 169 REIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + + L P E + + + +G +D L + + Sbjct: 500 QRLHAVLYPQIVADAGLARVYAEIEIPVRDILFRMERQGVLIDGELLTRQSHEIGKRLLD 559 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQA 273 L+ + + ++L LF + GL ++ T + T + VLS P Sbjct: 560 LEARAHAAAGQP-FNVNSPKQLAEILFDKLGLPVKKKTPSGTPSTDEEVLSELALDYPLP 618 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 ++ + ++ + L + +N+ GR+ + A TGR + QN+P Sbjct: 619 -KILLESRQLAKLKGTYTDKLPKMVNAGTGRVHTSYAQAVA-VTGRLASSDPNLQNIPVR 676 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +R+ IA G LV AD + IE R++A + Sbjct: 677 TAEGRR-------------------------IRAAFIAPPGSSLVSADYSQIELRIMAHL 711 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + L+AF GED++ T A F V P V DQR + KV+ L Y A Sbjct: 712 SEDARLLEAFAQGEDVHRATAAEIFGVRPVDVGPDQRRVAKVINFGLIYGMSA-----FG 766 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 L+L A + + +E + G R Sbjct: 767 LARELDLERGAAQAYIERYFARYPGVARYMATTREAARTQGYVETVFGR---------RL 817 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + GR Sbjct: 818 WLPEIRSSQA------------------------------------------GRRQ---- 831 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 G R+ +N + K VQ ++A + +++ VHDE+ Sbjct: 832 -GAERAAINAPMQG---SAADLIKSAMIAVQG---------WLDAERLQTRLLMQVHDEL 878 Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWA-KGLPLKAEGYESKRY 673 V E PD + L LMT +A +PL + + Sbjct: 879 VLEVPDDELARVRGELPRLMT---DFASLRVPLVVDVGVGANW 918 >gi|107026837|ref|YP_624348.1| DNA polymerase I [Burkholderia cenocepacia AU 1054] gi|116691969|ref|YP_837502.1| DNA polymerase I [Burkholderia cenocepacia HI2424] gi|170736037|ref|YP_001777297.1| DNA polymerase I [Burkholderia cenocepacia MC0-3] gi|105896211|gb|ABF79375.1| DNA polymerase I [Burkholderia cenocepacia AU 1054] gi|116649969|gb|ABK10609.1| DNA polymerase I [Burkholderia cenocepacia HI2424] gi|169818225|gb|ACA92807.1| DNA polymerase I [Burkholderia cenocepacia MC0-3] Length = 917 Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 116/700 (16%), Positives = 198/700 (28%), Gaps = 160/700 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + H + Sbjct: 343 AFDTETTALDPML----------ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVL 392 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113 LK LE+ D V + ++ VL DI ++ TL+ + Sbjct: 393 ARLKPWLESADRKKVGQHLKYDAQVLANY---DIALNGIEHDTLLESYVVESHRTHDMDS 449 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ K K E + A EY D +T ++ Sbjct: 450 LALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITLQLHH 499 Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E + + + + G +D A H + + +L+ E Sbjct: 500 ALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIELEGEA 559 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + +++ F + L + T + T + VL + P + Sbjct: 560 YELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLE 618 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R S+ + L +N T + TGR + QN+P + Sbjct: 619 HR-GLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR 677 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IAS G ++V AD + IE R++A ++G+ Sbjct: 678 -------------------------IREAFIASPGHRIVSADYSQIELRIMAHISGDASL 712 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF GED++ T A F V P +V DQR I KV+ L Y A + L Sbjct: 713 LRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSA-----FGLASNLG 767 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + A + + + + + E + G R ++ Sbjct: 768 ITRDAAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVETVFGR---------RLWLPEIN 818 Query: 519 E----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +A G A K + + Sbjct: 819 GGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDGWLTR-------------------- 858 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 D LA M+ + VHDE+V Sbjct: 859 ---------------------------------DQLASRMI----------MQVHDELVL 875 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P+ + L +M +PL AE + Sbjct: 876 EVPEGELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913 >gi|115357994|ref|YP_775132.1| DNA polymerase I [Burkholderia ambifaria AMMD] gi|115283282|gb|ABI88798.1| DNA polymerase I [Burkholderia ambifaria AMMD] Length = 917 Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 114/700 (16%), Positives = 199/700 (28%), Gaps = 160/700 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + +T ++ +F + H + Sbjct: 343 AFDTETTALDPMT----------ARLVGLSFSIEPGKAAYLPVAHRGPDLPEQLPIDDVL 392 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L+ LE+ D V + ++ VL + + TL+ + Sbjct: 393 ARLRPWLESADRKKVGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 450 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + A Y D +T ++ + Sbjct: 451 ALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALEQAAAYAAEDADITLQLHQA 500 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D AL + + +L+ + Sbjct: 501 LYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAY 560 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + T + T + VL + P + + Sbjct: 561 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 619 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ + L +N GR+ A TGR + QN+P + Sbjct: 620 R-GLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTAEGRR 677 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IAS G ++V AD + IE R++A ++G+ Sbjct: 678 -------------------------IREAFIASPGHRIVSADYSQIELRIMAHISGDASL 712 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF GED++ T A F V P +V DQR I KV+ L Y A + L Sbjct: 713 LRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSA-----FGLASNLG 767 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + A + + + + + + + G R ++ Sbjct: 768 ITRDAAKLYIDRYFTRYPGVAQYMEDTRTAAKDKGYVETVFGR---------RLWLPEIN 818 Query: 519 E----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +A G A K + + Sbjct: 819 GGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLTR-------------------- 858 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 D LA M+ + VHDE+V Sbjct: 859 ---------------------------------DQLASRMI----------MQVHDELVL 875 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E PD + L +M +PL AE + Sbjct: 876 EVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913 >gi|170701220|ref|ZP_02892190.1| DNA polymerase I [Burkholderia ambifaria IOP40-10] gi|170133887|gb|EDT02245.1| DNA polymerase I [Burkholderia ambifaria IOP40-10] Length = 917 Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 115/700 (16%), Positives = 200/700 (28%), Gaps = 160/700 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + +T ++ +F + H + Sbjct: 343 AFDTETTALDPMT----------ARLVGLSFSIEPGKAAYLPVAHRGPDMPEQLPIDDVL 392 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ D V + ++ VL + + TL+ + Sbjct: 393 ARLKPWLESADRKKVGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 450 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + A Y D +T ++ + Sbjct: 451 ALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALEQAAAYAAEDADITLQLHQA 500 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + + + + G +D AL + + +L+ + Sbjct: 501 LYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAY 560 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + T + T + VL + P + + Sbjct: 561 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 619 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ + L +N GR+ A TGR + QN+P + Sbjct: 620 R-GLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTAEGRR 677 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IAS G ++V AD + IE R++A ++G+ Sbjct: 678 -------------------------IREAFIASPGHRIVSADYSQIELRIMAHISGDASL 712 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF GED++ T A F V P +V DQR I KV+ L Y A + L Sbjct: 713 LRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSA-----FGLASNLG 767 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + A + + + ++ + + + G R ++ Sbjct: 768 ITRDAAKLYIDRYFTRYPGVAHYMEDTRTTAKDKGYVETVFGR---------RLWLPEIN 818 Query: 519 E----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +A G A K + + Sbjct: 819 GGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLTR-------------------- 858 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 D LA M+ + VHDE+V Sbjct: 859 ---------------------------------DQLASRMI----------MQVHDELVL 875 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E PD + L +M +PL AE + Sbjct: 876 EVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913 >gi|307128781|ref|YP_003880797.1| DNA polymerase I [Dickeya dadantii 3937] gi|306526310|gb|ADM96240.1| DNA polymerase I [Dickeya dadantii 3937] Length = 944 Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 102/717 (14%), Positives = 197/717 (27%), Gaps = 177/717 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------------- 49 D ET LT ++ + H Sbjct: 353 SFDTETDGLDTLT----------ANLVGVSLAIKPGEAAYLPLGHITSRVYSSNIYSSTV 402 Query: 50 -----------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 + +LK LE+ + + N F++ V+ +D+ T++ Sbjct: 403 SPATRMSTQLDRDRVLALLKPLLEDDGIRKIGQNLKFDKGVMARY-GIDLRGIA-FDTML 460 Query: 99 LARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 + + ++ E L + E + Sbjct: 461 ESYVLDSVAGRHDMDSLSERY------------LQHKTITFEEIAGKGKNQLTFDQIPLA 508 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQEL-----------WYLDQTINDRGYCVDVALA 204 Y D VT + + L +QEL + I G +D + Sbjct: 509 QASVYAAEDADVTLRLHETLWAKLEPQQELRKVFQNIDMPLVPVLSRIERTGVLIDTTIL 568 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQ 260 ++ + +L+ + L + ++L L+ + L + T +T + Sbjct: 569 AEHSRELTQRLAELEVQAHELAG-EAFNLSSPKQLGAILYEKLQLPVIKKTPKGAPSTNE 627 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL+ P + +R ++ + L + +N R T + TGR S Sbjct: 628 EVLAELALDYPLPKLILEHR-GLAKLKSTYTDKLPQMINPLTRRVHTSYHQAVTATGRLS 686 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380 QN+P + +R IA EG +++ AD Sbjct: 687 SSDPNLQNIPVRNEEGRR-------------------------IRQAFIAPEGYRILAAD 721 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R++A ++ + L+AF G D++ T A F + +VT +QR K + L Sbjct: 722 YSQIELRIMAHLSRDAGLLRAFSHGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFGLI 781 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y A + L + N E + + + ++ + G Sbjct: 782 YGMSA-----FGLSRQLAIPRSEAQKYMNLYFERYPGVQEYMERTRQQAVDQGYVSTLDG 836 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R +SR +A G A K+ + + + + L+ Sbjct: 837 RRLYLPDIHSRNVNSR-----KAAERAAINAPMQGTAADIIKKAMIAIDAWLRQEKPLVT 891 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 ML +Q Sbjct: 892 ML---------------------------------------MQ-------------VHDE 899 Query: 621 GYDIVLTVH----DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V VH DE ++ + +LM +PL+ + + Sbjct: 900 ---LVFEVHHSVLDE-----------ASAKIRNLMEGCMQ--LDVPLQVDIGTGSNW 940 >gi|30249439|ref|NP_841509.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718] gi|30138802|emb|CAD85379.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718] Length = 912 Score = 360 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 107/699 (15%), Positives = 208/699 (29%), Gaps = 156/699 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53 + ID ET S + + ++ +F + H + Sbjct: 337 VSIDTETTSLNPM----------EAKLVGLSFCMELGQAAYIPLAHHYPGVPSQLNREQV 386 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111 Q LK LE+ + + N ++R V + + TL+ + + L + Sbjct: 387 LQRLKPWLESDEKLKIGQNLKYDRHVFANH-GVMLNGI-VHDTLLQSYVLESHLSHDLDS 444 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + G + I+ + + G Y D + + Sbjct: 445 LASRH--------LGIQTISYD----EVTGKGAKRIGFEQVEIHRAGIYAAEDADIPLRL 492 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P+ E L + I G +D L + + + L+Q Sbjct: 493 HRVLYPVISQDAHLEYIYQQIEIPLLEVLFRIERNGVLLDTDLLRVQSGELTQQLVALEQ 552 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + SL + ++++ LF + L + T +T + VL P + Sbjct: 553 QAHSLAGHA-FNLNSTKQIQEILFGQHKLPVIKKTPKGVPSTDEEVLQRLASDYPLPKVL 611 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R ++ ++ L + +N GR+ A TGR + QN+P + Sbjct: 612 LDYR-GLAKLKSTYIDKLPQMVNKQTGRVHTHYAQAVA-VTGRLASNDPNLQNIPVRTPE 669 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA +G ++ AD + IE R++A ++G+ Sbjct: 670 GRR-------------------------IREAFIAPDGWLIMSADYSQIELRIMAHISGD 704 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AF G+D++ T A F V QV +QR KV+ L Y + T Sbjct: 705 AGLIHAFSEGQDIHRATAAEVFGVPVEQVNPEQRRYAKVINFGLIYGMS-----EFGLAT 759 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + A + + ++ + +E +H + +G + Q++ Sbjct: 760 QLGIERTAARTFIDRYFARYPGVADYMQRTRELAKQHGYVETVLGRRLQLSDIRSNQRNR 819 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ +A G A K + + Sbjct: 820 QM-----GAERAAINAPMQGTAADIIKLAMISVHRW------------------------ 850 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 L E +Q+ M +VL E++ Sbjct: 851 ---------------------LAEAQLQS------KLIM-QVHDE---LVL----EVLV- 874 Query: 636 TPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + L LM + +PLK + K + Sbjct: 875 ---DELPVIKENLPRLMENVLK--LDVPLKVQTGIGKNW 908 >gi|291059523|gb|ADD72258.1| DNA polymerase I (POL I) [Treponema pallidum subsp. pallidum str. Chicago] Length = 1015 Score = 360 bits (924), Expect = 5e-97, Method: Composition-based stats. Identities = 103/724 (14%), Positives = 194/724 (26%), Gaps = 193/724 (26%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC--------------- 47 + D ET D ++ F+ F + Sbjct: 410 VVAFDCETDGLHP----------HDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCT 459 Query: 48 ---------------------------VHDPVMPQVLKEALENTDVTIVAHNSYFERTVL 80 + + L+ + +T+V HN F+ V+ Sbjct: 460 CARSTNVETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVM 519 Query: 81 KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 + T+V A + I E Sbjct: 520 HRAGVFEHCACNIFDTMVAAWLLDPDRG--------TYGMDVLAASFFQIRTITFEEVVA 571 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQ 190 + + + Y D +T ++ L+ E L + Sbjct: 572 ----KGQTFAHVPYECAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILA 627 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + + G + + L + + + ++ SL + ++L+T LF E L Sbjct: 628 RMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIFSLAGH-EFNIGSPKQLQTVLFQELHLP 686 Query: 251 LEDL---TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 +T VL + P A ++ R S+ +L + + GR+ + Sbjct: 687 PGKKNTQGYSTDHSVLKKLARKHPIAEKILLFR-DLSKLRSTYTESLAKLADQTGRVHTS 745 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 +G + TGR S QN+P S + +R Sbjct: 746 FVQIG-TATGRLSSRNPNLQNIPIKSTEGRK-------------------------IRQA 779 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 A+ G +L+ AD IE VLA ++ ++ L AF D++ T A FNV+ V Sbjct: 780 FQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDVQPA 839 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R I K + G++ + Sbjct: 840 MRRIAKTINF--------------GIVYGMSAFRLSD----------------------- 862 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 E + + + + V ++ EQT + G Sbjct: 863 -------ELKISQKEAQSFIYRYFETYPGVYAFSTQV---AEQTRKTGYVTSLA------ 906 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 GR R + + + + R +Q+ + Sbjct: 907 -----------------GRRRYIRTIDSRNTLER---ARAERMA------LNTQIQSSAA 940 Query: 608 DILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKG 660 DI+ M+ +A ++L VHDE++ E P + + M Sbjct: 941 DIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVE--LS 998 Query: 661 LPLK 664 +PL+ Sbjct: 999 IPLR 1002 >gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025339|ref|YP_001933111.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14] gi|6166143|sp|P74933|DPO1_TREPA RecName: Full=DNA polymerase I; Short=POL I gi|3322368|gb|AAC26553.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017914|gb|ACD70532.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14] Length = 997 Score = 360 bits (924), Expect = 5e-97, Method: Composition-based stats. Identities = 103/724 (14%), Positives = 194/724 (26%), Gaps = 193/724 (26%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC--------------- 47 + D ET D ++ F+ F + Sbjct: 392 VVAFDCETDGLHP----------HDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCT 441 Query: 48 ---------------------------VHDPVMPQVLKEALENTDVTIVAHNSYFERTVL 80 + + L+ + +T+V HN F+ V+ Sbjct: 442 CARSTNVETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVM 501 Query: 81 KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 + T+V A + I E Sbjct: 502 HRAGVFEHCACNIFDTMVAAWLLDPDRG--------TYGMDVLAASFFQIRTITFEEVVA 553 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQ 190 + + + Y D +T ++ L+ E L + Sbjct: 554 ----KGQTFAHVPYECAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILA 609 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + + G + + L + + + ++ SL + ++L+T LF E L Sbjct: 610 RMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIFSLAGH-EFNIGSPKQLQTVLFQELHLP 668 Query: 251 LEDL---TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 +T VL + P A ++ R S+ +L + + GR+ + Sbjct: 669 PGKKNTQGYSTDHSVLKKLARKHPIAEKILLFR-DLSKLRSTYTESLAKLADQTGRVHTS 727 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 +G + TGR S QN+P S + +R Sbjct: 728 FVQIG-TATGRLSSRNPNLQNIPIKSTEGRK-------------------------IRQA 761 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 A+ G +L+ AD IE VLA ++ ++ L AF D++ T A FNV+ V Sbjct: 762 FQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDVQPA 821 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R I K + G++ + Sbjct: 822 MRRIAKTINF--------------GIVYGMSAFRLSD----------------------- 844 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 E + + + + V ++ EQT + G Sbjct: 845 -------ELKISQKEAQSFIYRYFETYPGVYAFSTQV---AEQTRKTGYVTSLA------ 888 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 GR R + + + + R +Q+ + Sbjct: 889 -----------------GRRRYIRTIDSRNTLER---ARAERMA------LNTQIQSSAA 922 Query: 608 DILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKG 660 DI+ M+ +A ++L VHDE++ E P + + M Sbjct: 923 DIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVE--LS 980 Query: 661 LPLK 664 +PL+ Sbjct: 981 IPLR 984 >gi|289664670|ref|ZP_06486251.1| DNA polymerase I [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670794|ref|ZP_06491869.1| DNA polymerase I [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 933 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 96/700 (13%), Positives = 178/700 (25%), Gaps = 159/700 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 D ET S L +I + + H Sbjct: 358 AFDTETDSLDPL----------QADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTQAL 407 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 L L + V + + ++ V++ +++ + TL+ + + + Sbjct: 408 AQLVPLLTDPAVRKLGQHGKYDLHVMRRH-GVELAGYA-HDTLLESFVLNSGSARHDMDS 465 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + G + + E + P + + Y D +T + Sbjct: 466 LAKRY--------LGYDTVKY----EDVCGKGAKQIPFAQISLEDATRYAAEDADITLRL 513 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + I G CVD A + + Q Sbjct: 514 HHVLGPKLAAEPGLERVYREIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQ 573 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF E L +T + L + + Sbjct: 574 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 632 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L E ++ GR+ + GA+ TGR S QN+P + Sbjct: 633 LEYR-GLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 690 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G+KL+ D + IE R++A ++G+ Sbjct: 691 GRR-------------------------IRRAFVAPAGRKLIACDYSQIELRIMAHLSGD 725 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+G D++ T A F V+ D+R K + L Y A Sbjct: 726 PGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSA-----FGLAR 780 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE-RVKKAWRQKH 514 L + + +F ++ + + G A Sbjct: 781 QLGIGRGEAQDYIALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINA----- 835 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +A G A KR V + Sbjct: 836 -GSQGQRAGAERAAINAPMQGTAADIIKRAMVSVDGW----------------------- 871 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 R ++ +V Sbjct: 872 --------IAGHAQRAKM---------------------ILQVHDE-----------LVF 891 Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E S + M S +PL + + Sbjct: 892 EADTDFVDTLLSEVTTRMASAAE--LRVPLVVDSGIGDNW 929 >gi|1633576|gb|AAB17467.1| similar to proofreading 3'-5' exonuclease and polymerase [Treponema pallidum] Length = 997 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 102/724 (14%), Positives = 193/724 (26%), Gaps = 193/724 (26%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC--------------- 47 + D ET D ++ F+ F + Sbjct: 392 VVAFDCETDGLHP----------HDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCT 441 Query: 48 ---------------------------VHDPVMPQVLKEALENTDVTIVAHNSYFERTVL 80 + + L+ + +T+V HN F+ V+ Sbjct: 442 CARSTNVETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVM 501 Query: 81 KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 + T+V A + I E Sbjct: 502 HRAGVFEHCACNIFDTMVAAWLLDPDRG--------TYGMDVLAASFFQIRTITFEEVVA 553 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQ 190 + + + Y D +T ++ L+ E L + Sbjct: 554 ----KGQTFAHVPYECAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILA 609 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + + G + + L + + + ++ SL + ++L+T LF E L Sbjct: 610 RMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIFSLAGH-EFNIGSPKQLQTVLFQELHLP 668 Query: 251 LEDL---TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 +T VL + P A ++ R S+ +L + + GR+ + Sbjct: 669 PGKKNTQGYSTDHSVLKKLARKHPIAEKILLFR-DLSKLRSTYTESLAKLADQTGRVHTS 727 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 +G + TGR S QN+P S + +R Sbjct: 728 FVQIG-TATGRLSSRNPNLQNIPIKSTEGRK-------------------------IRQA 761 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 A+ G +L+ AD IE LA ++ ++ L AF D++ T A FNV+ V Sbjct: 762 FQATVGHELISADYTQIELVALAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDVQPA 821 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R I K + G++ + Sbjct: 822 MRRIAKTINF--------------GIVYGMSAFRLSD----------------------- 844 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 E + + + + V ++ EQT + G Sbjct: 845 -------ELKISQKEAQSFIYRYFETYPGVYAFSTQV---AEQTRKTGYVTSLA------ 888 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 GR R + + + + R +Q+ + Sbjct: 889 -----------------GRRRYIRTIDSRNTLER---ARAERMA------LNTQIQSSAA 922 Query: 608 DILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKG 660 DI+ M+ +A ++L VHDE++ E P + + M Sbjct: 923 DIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVE--LS 980 Query: 661 LPLK 664 +PL+ Sbjct: 981 IPLR 984 >gi|255067522|ref|ZP_05319377.1| DNA polymerase I [Neisseria sicca ATCC 29256] gi|255048317|gb|EET43781.1| DNA polymerase I [Neisseria sicca ATCC 29256] Length = 952 Score = 360 bits (923), Expect = 6e-97, Method: Composition-based stats. Identities = 115/701 (16%), Positives = 205/701 (29%), Gaps = 154/701 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 373 DTIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 422 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V + + ++ + L Sbjct: 423 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 480 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 481 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIEQATEYAAQDADFAL 528 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 529 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 588 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E ++ + ++L+ LF + G+ + L + +T + VL P Sbjct: 589 EAYAVAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 647 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 648 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 705 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 VR A +G +V AD + IE R++A ++ Sbjct: 706 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 740 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G + Sbjct: 741 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 795 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + +E + G R K Sbjct: 796 AKSLGIDNLSAKTFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRNK 853 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + R LV D+ Sbjct: 854 NANARA---GAERAAINAPMQGTASDLIKRAMIDVS----------------RWLVSDDL 894 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + I+Q +VL Sbjct: 895 KSKL-----------------------IMQ-------------VHDE---LVL------- 908 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P+ + L +M +PL AE + Sbjct: 909 -EVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 948 >gi|72382587|ref|YP_291942.1| DNA polymerase I [Prochlorococcus marinus str. NATL2A] gi|72002437|gb|AAZ58239.1| DNA polymerase A [Prochlorococcus marinus str. NATL2A] Length = 986 Score = 360 bits (923), Expect = 6e-97, Method: Composition-based stats. Identities = 113/719 (15%), Positives = 213/719 (29%), Gaps = 166/719 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD--------- 50 + ID ET S ++ F F + + H Sbjct: 385 KPIAIDTETTSLNPFK----------AELVGLGFCFGESLKDIVYIPIGHQNKEGDLIKI 434 Query: 51 --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 + L++ + + N+ ++R +L + + I TL+ Sbjct: 435 NQINQLKIEEVIFALQDWFSSNENHKTLQNAKYDRLILLRH-GIILN-GVVIDTLLADYI 492 Query: 103 NGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 +L + K ++ + + + + Y Sbjct: 493 FDATLKHSLDEIAYR---------------EFGFKPKSFSDVVKKGEDFSYVDIKSASMY 537 Query: 161 CKGDVTVTREIFKRLEPLS------------SKEQELWYLDQTINDRGYCVDVALAHTLN 208 C DV +TR++ EQ L + I G +D L+ Sbjct: 538 CGMDVYLTRKLAIIYINRLKETSTKLINLLKEVEQPLEQVLAEIESTGIIIDTPYLKDLS 597 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVL 263 + + +++E+ ++ + ++L LF + L + T+ +T VL Sbjct: 598 LELTKKLNTIEKEVYNIAGS-EFNLSSPKQLGELLFEKLDLDRKKSRKTKTGWSTDVAVL 656 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGC 322 + P + +R S+ ++ L + + + GR+ + TGR S Sbjct: 657 EKLESDHPIVKMIIEHR-TISKLLNTYVDALPKLIEKETGRVHTDFNQAV-TATGRLSSS 714 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 QN+P + S +R + + KL+ AD + Sbjct: 715 NPNLQNIPVRTE-------------------------FSRRIRKAFLPQKDWKLLSADYS 749 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R+L ++GE+ A+ ED++ T F + D+R IGK + + Y Sbjct: 750 QIELRILTHLSGEEVLKNAYLKNEDVHSLTAKLLF--EKDAIDADERRIGKTINFGVIYG 807 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 GA Q+ A +TG++L + E + NF + + + +G Sbjct: 808 MGA---QRFARSTGVSL--IEAKYFLSKFKERYPAVFNFLEYQERLALSQGFVETLLGR- 861 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + + + Sbjct: 862 -----RRYFHFNKN---------------------------------------------- 870 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 GR L TT R+ E +Q S DI+ M+ A Sbjct: 871 GLGRLLGTP----PNEIDLTTARRAGMEAQQLRAAANAPIQGSSADIIKLAMIQLHSALR 926 Query: 621 ----GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 I+L VHDE+V E P E ++ + M + +PL E + Sbjct: 927 ETGLAAKILLQVHDELVLEVNPKDLEETKLLVKNTMENAVK--LSVPLIVETGVGVNWM 983 >gi|225548643|ref|ZP_03769690.1| DNA polymerase I family protein [Borrelia burgdorferi 94a] gi|225370673|gb|EEH00109.1| DNA polymerase I family protein [Borrelia burgdorferi 94a] Length = 908 Score = 360 bits (923), Expect = 6e-97, Method: Composition-based stats. Identities = 98/699 (14%), Positives = 205/699 (29%), Gaps = 160/699 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LK 58 + ID ET S T +I + F + + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 59 EALEN---TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVG 113 + N ++ I+ N F+ +LK IP + T++ A +L + Sbjct: 391 QKFNNLFKSNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLA 448 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 E K K + +++I +N + + Y D +T +F Sbjct: 449 E--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFN 493 Query: 174 RL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + + E + + + G +D + + E ++ E+ Sbjct: 494 IFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEII 553 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF + L L + + +T +VL S ++ + R Sbjct: 554 KSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQ 612 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ + L+E +N T + TGR + QN+P + Sbjct: 613 -IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK--- 668 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R G + AD + IE +LA ++ ++ +KA Sbjct: 669 ----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE +D++ T ++ F + ++T + R I K + ++ Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDFR 752 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 A E + ++ + ++ E Sbjct: 753 L------------------------------AKELGITKEEAKGFINSYFDSYPKIKEFI 782 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + R +++ +N Sbjct: 783 INQINFVKNA--------------------------GYSETILKRRRYIKEINSNNYLER 816 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635 + R +I+Q + DI+ M+ K I+L VHDE++ E Sbjct: 817 SA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 +P +E + +M ++ LPL+A K + Sbjct: 868 SPIEEENEVKKILKIMMET-AYILNLPLRANIETGKSWG 905 >gi|219684305|ref|ZP_03539249.1| DNA polymerase I family protein [Borrelia garinii PBr] gi|219672294|gb|EED29347.1| DNA polymerase I family protein [Borrelia garinii PBr] Length = 908 Score = 359 bits (922), Expect = 6e-97, Method: Composition-based stats. Identities = 98/700 (14%), Positives = 203/700 (29%), Gaps = 162/700 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------MP 54 + ID ET S T +I + F + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKFYIEKHYII 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112 Q ++ I+ N F+ +LK IP + T++ A +L + Sbjct: 391 QKFNNLF-KSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFL 447 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K K + +++I +N + + Y D +T +F Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSCEDADITFRLF 492 Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 E + + + G +D + + E ++ E+ Sbjct: 493 NIFTEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKEYGKELGKELELIENEI 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + L L + + +T +VL S ++ + +R Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKHR 611 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L+E +N T + TGR + QN+P + Sbjct: 612 R-IAKLKSTYTDNLIELINYKTNRLHTSFIQTRTATGRITSINPNLQNIPIKDEKGRK-- 668 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R G + AD + IE +LA ++ ++ +K Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIK 705 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE +D+++ T ++ F + ++T + R I K + ++ Sbjct: 706 AFENNKDIHIETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A E + ++ + ++ E Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + T R +++ +N Sbjct: 782 IINQINFVKNT--------------------------GYSETILKRRRYIKEINSNNYLE 815 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 + R + +Q + DI+ M+ K I+L VHDE++ Sbjct: 816 RSA---AERIAI------NSAIQGSAADIMKIAMIKVFNEFKSKKMESKILLQVHDEMLI 866 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+P +E + +M ++ LPL+A K + Sbjct: 867 ESPIKEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905 >gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b] gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b] Length = 928 Score = 359 bits (922), Expect = 6e-97, Method: Composition-based stats. Identities = 110/700 (15%), Positives = 206/700 (29%), Gaps = 152/700 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51 D ET S L+ ++ AF HD Sbjct: 349 DVFAFDLETDSLDTLS----------ANIVGLAFAVAPGEAAYLPVAHDYLDAPDQLDRA 398 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALK 110 + LK LE++ V N ++R VLK ++++ ++ T++ + Sbjct: 399 AVLAQLKPLLEDSKAAKVGQNLKYDRGVLKNY-DIELNGIKY-DTMLESYCLNSVGGKHD 456 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A + + K +E ++ A G Y D VT + Sbjct: 457 MDSLAARWLNHKTVTFEE----------IAGKGKNQLTFNQIAIEQAGHYAAEDADVTLQ 506 Query: 171 IFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + ++ P E L + + G +D + +Q + +L+ Sbjct: 507 LHLKMWPELEKEAGPKKVFTEIEMPLLKVISRVERNGVLIDQNILAKHSQELTTRLAELE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 Q+ L + ++L+T LF + G+ T +T + VL+ P Sbjct: 567 QQAHDLAG-EPFNLSSTKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKV 625 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R S+ + L +N GR+ + + TGR S QN+P + Sbjct: 626 ILEHR-GLSKLKSTYTDKLPLMINPVTGRVHTSYHQAV-TATGRLSSTDPNLQNIPVRND 683 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA K++V AD + IE R++A ++ Sbjct: 684 EGRR-------------------------IRQAFIAGPDKRIVAADYSQIELRIMAHLSQ 718 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF GED++ T + F VA ++V+ +QR K + L Y A + Sbjct: 719 DKGLLAAFAQGEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIYGMSA-----FGLS 773 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 LN+ + E + + +E + G Sbjct: 774 RQLNIGAGEAKKYMDLYFERYPGVLRYMEETREQAAAKGYVETLDGRRLWLPDITSSNAI 833 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R +A G A KR + + ++ + + + Sbjct: 834 RR-----KAAERAAINAPMQGTAADIIKRAMIAVDGWLLEQKDDKVKM------------ 876 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 I+Q +V +H Sbjct: 877 --------------------------IMQ-------------VHDE---LVFEIH----- 889 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +A + LM + +PL E + + Sbjct: 890 ---QDAVASASDKIRQLMEGSMK--LDVPLLVEVGTGENW 924 >gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont] Length = 929 Score = 359 bits (922), Expect = 8e-97, Method: Composition-based stats. Identities = 108/699 (15%), Positives = 208/699 (29%), Gaps = 150/699 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51 D ET S L+ ++ AF HD Sbjct: 350 DVFAFDLETDSLDTLS----------ANIVGIAFAVAPGKAAYLPVAHDYLDAPPQLDRA 399 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALK 110 + + LK LE++ V N ++R VLK ++++ + T++ + Sbjct: 400 AVLKQLKPLLEDSKAAKVGQNLKYDRGVLKNY-DIELNGIK-FDTMLESYCLNSVGGKHD 457 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A + + K +E ++ A Y D VT + Sbjct: 458 MDSLAARWLNHKTVTFEE----------IAGKGKYQLTFNQIALEQAAHYAAEDADVTLQ 507 Query: 171 IFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + ++ P +E L + + G +D + +Q + +L+ Sbjct: 508 LHLQMWPKLEQEAGPKQVFEAIEMPLVTVISRVERNGVLIDQNILAKHSQELTTRLAELE 567 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 Q+ L + ++L+T LF + + T +T ++VL+ P Sbjct: 568 QKAHELAG-EPFNLSSTKQLQTILFEKQEIKPTKKTPGGAPSTSEKVLAELALDYPLPKV 626 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R S+ + L + +N GR+ + + TGR S QN+P + Sbjct: 627 ILEHR-GLSKLKSTYTDKLPQMINPITGRVHTSYHQAV-TATGRLSSNDPNLQNIPVRNE 684 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA K++V AD + IE R++A ++ Sbjct: 685 EGRR-------------------------IRQAFIAGADKRIVAADYSQIELRIMAHLSQ 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF GED++ T + F VA ++V+ +QR K + L Y A + Sbjct: 720 DKGLLDAFAQGEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIYGMSA-----FGLS 774 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 LN+ + E + + + + + G Sbjct: 775 RQLNIGAGEAKKYMDLYFERYPGVLRYMEATRAQAADKGYVETLDGRRLWLPDINSSNAI 834 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R +A G A KR + + +N+ + + Sbjct: 835 RR-----KAAERAAINAPMQGTAADIIKRAMIAVDGWLLQQNSDEVKM------------ 877 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 I+Q +V +H Sbjct: 878 --------------------------IMQ-------------VHDE---LVFEIH----- 890 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 D + + LM ++ +PL+ E + Sbjct: 891 --KDAVAGASQTIRELMENSMK--LDVPLQVEVGTGDNW 925 >gi|123966537|ref|YP_001011618.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515] gi|123200903|gb|ABM72511.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515] Length = 976 Score = 359 bits (921), Expect = 8e-97, Method: Composition-based stats. Identities = 111/712 (15%), Positives = 201/712 (28%), Gaps = 157/712 (22%) Query: 2 ATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHDPVMPQ--- 55 + +D ET S L D ++ F + + H + Sbjct: 380 KEIVALDTETNSLNPL----------DAELVGIGFCLGEESNDLFYIPLGHQSQKDEMNQ 429 Query: 56 --------VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107 L+ +E+ + N F+R + L++ TL+ Sbjct: 430 LAIEDVFLNLRTWIESPEKEKTLQNCKFDRQIFYNH-GLNLS-GVTFDTLLADYILNN-- 485 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 E LS E K + + +NK YC DV + Sbjct: 486 -----QEKHGLSEICFRE------FGFKPPSFKETVGKNKDFSFVDINHASIYCGYDVFL 534 Query: 168 TREIFKRLEPLS------------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 T +I K + E L + + G +D+ + L++ + Sbjct: 535 TYKIAKIFKERFRKEKKELTKLFKEIELPLEQVLSGMEMSGISIDITYLNELSRELKSTL 594 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270 +++ + + + ++L LF + L + T+ +T VL + Sbjct: 595 ANIEENVFEI-AKQEFNLSSPKQLGEILFDKLNLDKKKSRKTKTGWSTDAVVLERLVEEH 653 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNL 329 + +R S+ ++ L +N GR+ A+ TGR S QN+ Sbjct: 654 EIIPYLIKHR-TLSKLLSTYIDALPNLINKKTGRVHTNFNQA-ATATGRLSSSNPNLQNI 711 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P + S +R + +G KL+ AD + IE R+L Sbjct: 712 PVRTE-------------------------FSRRIRKAFLPEKGWKLLSADYSQIELRIL 746 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A E+ + AF +D++ T F + D+R +GK + + Y G K Sbjct: 747 AHLANEEILITAFHQNDDIHSLTARLIF--EKKDINSDERRVGKTINFGVIYGMGIKK-- 802 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 A +TG++ + + F + + G E Sbjct: 803 -FARSTGVSTTE--AKEFLIKYKKRYAKIFKFLELQERLALSKGYVETIFGRKREFKFD- 858 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 K LI P Sbjct: 859 ------------------------------------------KNGLGRLIGKEPY----- 871 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------D 623 ++ + Q R +Q S DI+ M+ K Sbjct: 872 --EIDLQTARKAGMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKLLEMNIPVK 923 Query: 624 IVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE++ E L M +PL + + Sbjct: 924 MLLQVHDELLFEVKPDFLEITKQLVKETMEDCVK--LKVPLLVDIGVGNNWM 973 >gi|219685277|ref|ZP_03540097.1| DNA polymerase I superfamily protein [Borrelia garinii Far04] gi|219673373|gb|EED30392.1| DNA polymerase I superfamily protein [Borrelia garinii Far04] Length = 908 Score = 359 bits (921), Expect = 8e-97, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 202/700 (28%), Gaps = 162/700 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------MP 54 + ID ET S T +I + F + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKFYIEKHYII 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112 Q ++ I+ N F+ +LK IP + T++ A +L + Sbjct: 391 QKFNNLF-KSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFL 447 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K K + +++I +N + + Y D +T +F Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSCEDADITFRLF 492 Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 E + + + G +D + + E ++ E+ Sbjct: 493 NIFTEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKEYGKELGKELELIENEI 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + L L + + +T +VL S ++ + +R Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKHR 611 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L+E +N T + TGR + QN+P + Sbjct: 612 R-IAKLKSTYTDNLIELINYKTNRLHTSFIQTRTATGRITSINPNLQNIPIKDEKGRK-- 668 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R G + AD + IE +LA ++ ++ +K Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIK 705 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE +D++V T ++ F ++T + R I K + ++ Sbjct: 706 AFENNKDIHVETASKLFKTEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A E + ++ + ++ E Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + T R +++ +N Sbjct: 782 IINQINFVKNT--------------------------GYSETILKRRRYIKEINSNNYLE 815 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 + R + +Q + DI+ M+ K I+L VHDE++ Sbjct: 816 RSA---AERIAI------NSAIQGSAADIMKIAMIKVFNEFKSKKMESKILLQVHDEMLI 866 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+P +E + +M ++ LPL+A K + Sbjct: 867 ESPIKEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905 >gi|260460455|ref|ZP_05808706.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075] gi|259033560|gb|EEW34820.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075] Length = 997 Score = 359 bits (921), Expect = 9e-97, Method: Composition-based stats. Identities = 97/686 (14%), Positives = 196/686 (28%), Gaps = 153/686 (22%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDP------------------VMPQVLKEALENTDVTI 68 +I A H VLK LE+ V Sbjct: 422 QAELIGMAMATAPGRAAYIPFAHKSGNGDLLGGGTLENQIPLREALAVLKPLLEDKSVLK 481 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALKAVGEALKLSSQKME 124 +A N ++ ++ I + + T++++ + A+ + Sbjct: 482 IAQNLKYDLVIMSRY---GIDVAPFDDTMLISYVLDAGTPHGHGMDALAD---------- 528 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----- 179 K L + + + + + D VT ++ L+P Sbjct: 529 --KWLGHTPLQLKDVIGSGKNSVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAATGL 586 Query: 180 -----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E+ L + + RG VD + L+ + +L++E+ L + + Sbjct: 587 VSVYERLERPLVSVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQLVGERI-NIG 645 Query: 235 CLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF GL T+ +T ++L + + + + ++ Sbjct: 646 SPKQLGDILFGRMGLPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTY 705 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L ++ + + T L A+ TGR S QN+P + + Sbjct: 706 TDALPGFIHPETKRVHTSYALAATTTGRLSSSDPNLQNIPVRTAEGRK------------ 753 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R+ IA +G +LV AD + IE RVLA +A +AF G D++ Sbjct: 754 -------------IRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHA 800 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + FNV + + R K + + Y A L++ Sbjct: 801 ITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISA-----FGLANQLSIPREEASNYIKK 855 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 E + ++ + EH + G R + + +A Sbjct: 856 YFERFPGIRDYIEETKAYAREHGFVETIFGRRIHYP--DIRSSNPSIRAFN---ERASIN 910 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 G A +R + L + Sbjct: 911 ARLQGTAADIIRR-----------------------------------AMVRMDEALEKA 935 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE-TPDTDEFNASMLYH 649 +R ++ E++ E E ++ H Sbjct: 936 KL------------SAR-----MLLQVHD-----------ELIFETVDAEVEATIPIVRH 967 Query: 650 LMTSN--PSWAKGLPLKAEGYESKRY 673 +M + P+ + +PL + + + Sbjct: 968 VMENAAMPAVSMSVPLHVDARAANNW 993 >gi|114568570|ref|YP_755250.1| DNA polymerase I [Maricaulis maris MCS10] gi|114339032|gb|ABI64312.1| DNA polymerase I [Maricaulis maris MCS10] Length = 928 Score = 359 bits (921), Expect = 9e-97, Method: Composition-based stats. Identities = 95/712 (13%), Positives = 192/712 (26%), Gaps = 164/712 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49 + +D ET + ++ + H Sbjct: 338 QIAVDTETDALSSTASG----------LVGISLATAPGRACYIPLAHVDPQGTGDMFDTG 387 Query: 50 --DPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +P +VLK LE+ V + N ++ VL I + + T++++ Sbjct: 388 AAPEQIPMDQALKVLKPLLEDPAVLKIGQNFKYDLGVLSRY---GIDVAPYDDTMLISYV 444 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + A+ E + G I + + Sbjct: 445 MEAGLHGHGMDALAE--------LHLGHTCIPF----KEICGTGKNQITFDKVPLDKATL 492 Query: 160 YCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T +++ L+P + E+ + + + G VD + L+ Sbjct: 493 YAAEDADITLRLWEILKPALVAKKMATVYETLERPMADVLSKMERVGIKVDPDQLNRLSS 552 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSS 265 + + E + +++ LF E GL T+ +T VL Sbjct: 553 DFGQKMMAAEAEAHEAAGRD-FNVASPKQIGEILFGEMGLPGGKKTKTGAWSTDAAVLDQ 611 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + ++ ++L +N D + T L A+ TGR S Sbjct: 612 LAAEGHALPVALLEYRQFAKLKSTYSDSLFAHINRDTKRVHTSFSLAATTTGRLSSTEPN 671 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P + + +R IA G LV AD + +E Sbjct: 672 LQNIPIRTEAGR-------------------------QIREVFIAEPGHVLVAADYSQVE 706 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A + +AF G D++ T + F V + R K + + Y A Sbjct: 707 LRLLAHIANVESLKQAFRDGTDIHAMTASEVFGVPIEGMDPMVRRKAKAINFGVIYGISA 766 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + + ++ E++ + M+ E + G Sbjct: 767 -----FGLANQIGVKRDEAKAFIDAYFEKFPGIRAYMDEMKAKAAETGYVETIFGRRAHF 821 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 R K+ + + G A +R + + Sbjct: 822 P--GIRDKNPNMRMF---AERQAINAPIQGSAADVIRRAMIRMDDALN------------ 864 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 + ++ A+ ++ Sbjct: 865 ----------------------------------------AANLDAKMLLQVHDE----- 879 Query: 626 LTVHDEIVCETPDTDEFNASML-YHLMTSN--PSWAKGLPLKAEGYESKRYR 674 +V E P+ + L +M P+ +PL + + + Sbjct: 880 ------LVFEVPENQAADLIALTAKVMGEACSPALELSVPLVVDAKAGRTWG 925 >gi|260172660|ref|ZP_05759072.1| DNA polymerase I [Bacteroides sp. D2] gi|315920953|ref|ZP_07917193.1| DNA polymerase I [Bacteroides sp. D2] gi|313694828|gb|EFS31663.1| DNA polymerase I [Bacteroides sp. D2] Length = 949 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 98/694 (14%), Positives = 195/694 (28%), Gaps = 147/694 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 L +D ET + D ++ +F ++ D + Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 + EN + V N ++ VL+ + T++ + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GATVK-GPLFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + ELI K + Y D VT ++ L Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDVYLYACEDADVTLKLKNVL 533 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E E L + I G +D + + ++++E+ L Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIYEL 593 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL S + P ++ +R Sbjct: 594 AG-ETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 652 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L + +N GR+ + + TGR S QN+P + +E Sbjct: 653 -GLKKLLGTYIDALPQLINPRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE- 709 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I EG AD + IE R++A ++ ++ + Sbjct: 710 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF + D++ T A+ + + V D R K + Y +N+ Sbjct: 746 DAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISV-----FGLAERMNV 800 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + E + + + + E + +R +++ V Sbjct: 801 DRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHR--KRFLPDINSRNAVVRG 858 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G A Sbjct: 859 Y---AERNAINAPIQGSAADII-------------------------------------- 877 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 ++ Y TE +QA M+ L VHDE+ P Sbjct: 878 ------KVAMARIYQRFQTEG-IQA------K--MI----------LQVHDELNFSVPVN 912 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + ++ +PLKA+ K + Sbjct: 913 EKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 945 >gi|315637294|ref|ZP_07892513.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22] gi|315478458|gb|EFU69172.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22] Length = 896 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 102/702 (14%), Positives = 218/702 (31%), Gaps = 167/702 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56 + D ET S +D+ + ++ F+F ++++ H + + Sbjct: 329 IVSFDTET-SDLDVK---------NAKLVGFSFAYEENKAYYVPIGHVYLGVGNQISLEA 378 Query: 57 LKEALENTDVTI-VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 K A+ + V N ++ ++K F++++ + + T++L+ + VG Sbjct: 379 AKNAIIQLNRYKLVLQNFKYDYEIIKNNFDIELRL--YADTMILSWLLN---TNEKVGLD 433 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 ++ ++I+ + + + EY D +T +FK+ Sbjct: 434 YQIDKYFD---HKMISF-------TDVVKKGENFSNVDIERACEYAAEDALMTLRLFKKQ 483 Query: 176 EPL-------------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + E + Y+ + G VDV L ++ + +L ++ Sbjct: 484 LEIFKEKEEEEILNLAFEVEFDFIYVLANMEMNGIKVDVNLLKEYKELSNKNINELTAKI 543 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L LF GL T+ +T + VL+ + Sbjct: 544 YQTSG-AEFNINSPKQLGALLFETLGLPTAKKTKTGYSTDEAVLNGLINEHEVIPLLLQY 602 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R A + + L+E + D T + TGR S QN+P S S+ Sbjct: 603 R-EAYKLQSTYIEPLLELGSKSDDNRIHTSFLHTGTATGRLSSKNPNLQNIPTKSDSN-- 659 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R I +G KLV D + IE R+LA + ++ Sbjct: 660 -----------------------IQIRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKAL 696 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++AFE D++ T + F + K++R I K + L Y G+ Sbjct: 697 VEAFENDLDIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGS------------- 740 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + ++ ++ + V Sbjct: 741 -------------------------------KKLGETLGIPSKEAKQYIDSYFEAFKSVK 769 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + I + ++R D + + Sbjct: 770 DYLKSIEDFAN--INGYVKTLLNRKR-------------------------LFDFNSANA 802 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIV 633 + Y + + Q + D++ M+N ++L +HDE+V Sbjct: 803 MMK---------AAYLREAVNTLFQGSAADLIKLAMINIYQKYKDNENIKLLLQIHDELV 853 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E D + + ++M + + +PLK ++ Sbjct: 854 FEVKDEFVEEITFSIKNIMENI--YKLNVPLKVSLSVGSSWK 893 >gi|225551906|ref|ZP_03772846.1| DNA polymerase I family protein [Borrelia sp. SV1] gi|225370904|gb|EEH00334.1| DNA polymerase I family protein [Borrelia sp. SV1] Length = 908 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 202/700 (28%), Gaps = 162/700 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54 ID ET S T +I + F + + Sbjct: 341 KYTSIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112 Q E+ + I+ N F+ +LK IP + T++ A +L + Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFL 447 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K K + +++I +N + + Y D +T +F Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492 Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + E + + + G +D + + E ++ E+ Sbjct: 493 NLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELIENEI 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + L L + + +T +VL S ++ + R Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L+E +N T + TGR + QN+P + Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R G + AD + IE +LA ++ ++ +K Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIK 705 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE +D++ T ++ F + ++T + R I K + ++ Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A E + ++ + ++ E Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 R +++ +N Sbjct: 782 IINQINFVRNA--------------------------GYSETILKRRRYIKEINSNNYLE 815 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 + R +I+Q + DI+ M+ K I+L VHDE++ Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+P +E + +M ++ LPL+A K + Sbjct: 867 ESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905 >gi|160883388|ref|ZP_02064391.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483] gi|156111108|gb|EDO12853.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483] Length = 949 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 98/694 (14%), Positives = 195/694 (28%), Gaps = 147/694 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 L +D ET + D ++ +F ++ D + Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDKALKIVNEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 + EN + V N ++ VL+ + T++ + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GATVK-GPLFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + ELI K + Y D VT ++ L Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDVYLYACEDADVTLKLKNVL 533 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E E L + I G +D + + ++++E+ L Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIYEL 593 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL S + P ++ +R Sbjct: 594 AG-ETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 652 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L + +N GR+ + + TGR S QN+P + +E Sbjct: 653 -GLKKLLGTYIDALPQLINPRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE- 709 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I EG AD + IE R++A ++ ++ + Sbjct: 710 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF + D++ T A+ + + V D R K + Y +N+ Sbjct: 746 DAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISV-----FGLAERMNV 800 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + E + + + + E + +R +++ V Sbjct: 801 DRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHR--KRFLPDINSRNAVVRG 858 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G A Sbjct: 859 Y---AERNAINAPIQGSAADII-------------------------------------- 877 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 ++ Y TE +QA M+ L VHDE+ P Sbjct: 878 ------KVAMARIYQRFQTEG-IQA------K--MI----------LQVHDELNFSVPVN 912 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + ++ +PLKA+ K + Sbjct: 913 EKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 945 >gi|237720620|ref|ZP_04551101.1| DNA polymerase I [Bacteroides sp. 2_2_4] gi|229450371|gb|EEO56162.1| DNA polymerase I [Bacteroides sp. 2_2_4] Length = 949 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 97/694 (13%), Positives = 194/694 (27%), Gaps = 147/694 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 L +D ET + D ++ +F ++ D + Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 + EN + V N ++ VL+ + T++ + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GATVK-GPLFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + ELI K + Y D VT ++ L Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDVYLYACEDADVTLKLKNVL 533 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E E L + I G +D + + ++++E+ L Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIYEL 593 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL S + P ++ +R Sbjct: 594 AG-ETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 652 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L + +N GR+ + + TGR S QN+P + +E Sbjct: 653 -GLKKLLGTYIDALPQLINPRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE- 709 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I EG AD + IE R++A ++ ++ + Sbjct: 710 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF + D++ T A+ + + V D R K + Y +N+ Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVGSDMRRKAKTANFGIIYGISV-----FGLAERMNV 800 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + E + + + + E + +R +++ V Sbjct: 801 DRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHR--KRFLPDINSRNAVVRG 858 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G A Sbjct: 859 Y---AERNAINAPIQGSAADII-------------------------------------- 877 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 ++ Y E +QA M+ L VHDE+ P Sbjct: 878 ------KVAMARIYQRFQAEG-IQA------K--MI----------LQVHDELNFSVPVN 912 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + ++ +PLKA+ K + Sbjct: 913 EKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 945 >gi|157737513|ref|YP_001490196.1| DNA polymerase I [Arcobacter butzleri RM4018] gi|157699367|gb|ABV67527.1| DNA polymerase I [Arcobacter butzleri RM4018] Length = 896 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 102/702 (14%), Positives = 218/702 (31%), Gaps = 167/702 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56 + D ET S +D+ + ++ F+F ++++ H + + Sbjct: 329 IVSFDTET-SDLDVK---------NAKLVGFSFAYEENKAYYVPIGHVYLGVGNQISLEA 378 Query: 57 LKEALENTDVTI-VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 K A+ + V N ++ ++K F++++ + + T++L+ + VG Sbjct: 379 AKNAIIQLNRYKLVLQNFKYDYEIIKNNFDIELRL--YADTMILSWLLN---TNEKVGLD 433 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 ++ ++I+ + + + EY D +T +FK+ Sbjct: 434 YQIDKYFD---HKMISF-------TDVVKKGENFSNVDIERACEYAAEDALMTLRLFKKQ 483 Query: 176 EPL-------------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + E + Y+ + G VDV L ++ + +L ++ Sbjct: 484 LEIFKEKEEEEILNLAFEVEFDFIYVLANMEMNGIKVDVNLLKEYKELSNKNINELTAKI 543 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L LF GL T+ +T + VL+ + Sbjct: 544 YQTSGV-EFNINSPKQLGALLFETLGLPTAKKTKTGYSTDEAVLNGLINEHEVIPLLLQY 602 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R A + + L+E + D T + TGR S QN+P S S Sbjct: 603 R-EAYKLQSTYIEPLLELGSKSDDNRIHTSFLHTGTATGRLSSKNPNLQNIPTKSDS--- 658 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 + +R I +G KLV D + IE R+LA + ++ Sbjct: 659 ----------------------TIQIRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKAL 696 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++AFE D++ T + F + K++R I K + L Y G+ Sbjct: 697 VEAFENDLDIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGS------------- 740 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + ++ ++ + V Sbjct: 741 -------------------------------KKLGETLGIPSKEAKQYIDSYFEAFKSVK 769 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + I + ++R D + + Sbjct: 770 DYLKSIEDFAH--INGYVKTLLNRKR-------------------------LFDFNSANA 802 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIV 633 + Y + + Q + D++ M+N ++L +HDE+V Sbjct: 803 MMK---------AAYLREAVNTLFQGSAADLIKLAMINIYQKYKDNENIKLLLQIHDELV 853 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E D + + ++M + + +PLK ++ Sbjct: 854 FEVKDEFVEEITFSIKNIMENI--YKLNVPLKVSLSVGSSWK 893 >gi|299145218|ref|ZP_07038286.1| DNA polymerase type I [Bacteroides sp. 3_1_23] gi|298515709|gb|EFI39590.1| DNA polymerase type I [Bacteroides sp. 3_1_23] Length = 949 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 98/694 (14%), Positives = 195/694 (28%), Gaps = 147/694 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 L +D ET + D ++ +F ++ D + Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 + EN + V N ++ VL+ + T++ + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GATVK-GPLFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + ELI K + Y D VT ++ L Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDVYLYACEDADVTLKLKNVL 533 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E E L + I G +D + + ++++E+ L Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIYEL 593 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL S + P ++ +R Sbjct: 594 AG-ETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 652 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L + +N GR+ + + TGR S QN+P + +E Sbjct: 653 -GLKKLLGTYIDALPQLINPRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE- 709 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I EG AD + IE R++A ++ ++ + Sbjct: 710 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF + D++ T A+ + + V D R K + Y +N+ Sbjct: 746 DAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISV-----FGLAERMNV 800 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + E + + + + E + +R +++ V Sbjct: 801 DRKEAKELIDGYFETYPGVKVYMDKSIQVAQEKGYVETIFHR--KRFLPDINSRNAVVRG 858 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G A Sbjct: 859 Y---AERNAINAPIQGSAADII-------------------------------------- 877 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 ++ Y TE +QA M+ L VHDE+ P Sbjct: 878 ------KVAMARIYQRFQTEG-IQA------K--MI----------LQVHDELNFSVPVN 912 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + ++ +PLKA+ K + Sbjct: 913 EKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 945 >gi|146276256|ref|YP_001166415.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025] gi|145554497|gb|ABP69110.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025] Length = 937 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 98/711 (13%), Positives = 187/711 (26%), Gaps = 168/711 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + ID ET S ++ ++ + + H Sbjct: 351 HVAIDTETTSLDEMR----------AELVGISLCVEAGSACYIPLGHRAGGGDLFGSLDL 400 Query: 51 --PVMPQVL-----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 +P L K LE+ + + N ++ + I + T++++ + Sbjct: 401 VADQIPLDLALSMLKPVLEDDAILKIGQNMKYDAKIFARH---GIRVAPIDDTMLMSYAM 457 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + + K K L+ R Y Sbjct: 458 HAGRHGHGMDELCDTY--LGHKPIAIKTLL----------GSGKSQITFDRVPVDQAVCY 505 Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D VT +++ +P + E+ L + + G VD ++ Sbjct: 506 AAEDADVTLRLWRLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMSNA 565 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET----GLHLEDLTETTCQRVLSSN 266 + L+ E+ L G + ++L LF G+ ++ T VL Sbjct: 566 FAQKMAALEAEIHGLAGGP-FNVGSPKQLGEILFERMSLQGGVKGKNGAWGTGADVLEDL 624 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFP 325 + + S+ + L E ++ + GR+ + GA+ TGR + Sbjct: 625 AAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPN 683 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P + +R +A +GK LV D + IE Sbjct: 684 LQNIPVRTEEGRR-------------------------IREAFVAPKGKLLVSVDYSQIE 718 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A +AF G D++ T A FNV + R K + + Y Sbjct: 719 LRILAHIADIPALKQAFREGHDIHAMTAAEMFNVPLEGMDPMVRRQAKAINFGVIYGISG 778 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 L + + E + + H G Sbjct: 779 -----FGLARNLRIPRADAQGFIDRYFERFPGIRAYMDETVAFAKAHGFVQTLFGR---- 829 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 R ++ P + Sbjct: 830 -----RINTPEINA-------------------------KGPGAGFARRAAI-------- 851 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL-AEGMMNATKAGYDI 624 N T + R K D L A+ ++ + Sbjct: 852 ----------NAPIQGTAADVIRRAMIRMPKAL---------DGLPAKMLLQVHDE---L 889 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 + V DE + + + +M S P+ +PL + + Sbjct: 890 LFEV-DE------AAADPVIARVREVMESASEPAVKLSVPLTVDAGRGANW 933 >gi|297171385|gb|ADI22388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [uncultured Planctomycetales bacterium HF0500_02G17] Length = 987 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 106/719 (14%), Positives = 202/719 (28%), Gaps = 163/719 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQ 55 + +D ET + + ++ +F + + Sbjct: 379 IAVDTETTAIRPMR----------ADLVGLSFAVEPGSGWYVPVRSPEPETHLDEATVLG 428 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-------HRW--ICTLVLARSNG-- 104 L+ LE+ + HN ++ VL+ +++ W +++ + Sbjct: 429 ALRPVLEDATKPKLGHNLKYDILVLRRA-GVELRGHVSTVGAGDWPGGDSMIASYLVDAS 487 Query: 105 -LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 ++ A+ AL L R + K Y Sbjct: 488 RSSHSMDALAMAL------------LERRNIPISELIGTGKKQKTFDTVPLDRATPYAAE 535 Query: 164 DVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 D VT ++ +RL P + L + + G VD ++ Sbjct: 536 DADVTLQLCQRLLPELQEMELGALFGGLEMPLVDVLAELEWNGIRVDPDELDRQRGRIEG 595 Query: 214 ERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETG----------LHLEDLTETTCQ 260 L ++ G + ++L LF + + +T Sbjct: 596 RVKDLRNQIADEAMGAVGREFDADSPKQLAGVLFNKPDAADPGLGLRVIKRGKTGPSTDA 655 Query: 261 RVLSSNKKL----TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASR 315 VL + TP + R ++ L LVE ++ R+ + A+ Sbjct: 656 EVLEKLSQDASVKTPIPDLILEYRQ-LTKLVNTYLVNLVEEIDPRTKRIHASFNQTVAA- 713 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P + E +R +A G Sbjct: 714 TGRLSSSDPNLQNIPIRTELGRE-------------------------IRKAFVAEPGHL 748 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 LV AD + IE R+LA ++ + ++AF G+D++ A+ +V A+V+++QR K++ Sbjct: 749 LVAADYSQIELRLLAHLSRDPALIEAFREGQDIHAAVAAQIHDVPLAEVSREQRNGAKMV 808 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + Y A L ++ + + F Sbjct: 809 NFGIVYGVTA-----FGLARRLGVSNSEAGEIIDGYKRRFAGITTFLEECIAQAHAQGYV 863 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + + R ++ R + ++ G A K V L Sbjct: 864 ETMMKRRRPIPDIDSRDQNRR-----ALAERMAINSVVQGSAADLIKIAMVDLH------ 912 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 R L R + I Sbjct: 913 ----------RRLS------------------PRAAAWREGAGPEI-------------- 930 Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L +HDE+V E P ++ M + A +PL A+ S + Sbjct: 931 ----EGVRMLLQIHDELVFEAPKDRAEAVRDLIVARMEAAM--ALDVPLVADASVSGDW 983 >gi|209886676|ref|YP_002290533.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5] gi|209874872|gb|ACI94668.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5] Length = 1003 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 97/693 (13%), Positives = 194/693 (27%), Gaps = 166/693 (23%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDP--------------------VMPQVLKEALENTDV 66 + A + H + + L LE+ V Sbjct: 427 QADICGIALALSPNEAAYIPLGHKKAGGGDDLFASGLADGQIEAAKVLETLTALLESEAV 486 Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKM 123 + F +L +I + +++ + + ++A+ E Sbjct: 487 LKTGFDIKFAAVLLAQH---NITLRTVDDVQLMSYALDAGRSSHDIEALAEQW------- 536 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 G E+IA + EY V ++ + E+ Sbjct: 537 -LGHEMIA----HADIVGSGRNRISLDQVEIPRAAEYGAESADVIMRLWLVFKARLISER 591 Query: 184 ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L + + RG +D + L+ +L+ E+ + + + Sbjct: 592 MNNVYESLERPLIDVLARMERRGIMIDRQVLARLSGEFAQSAARLEAEIREIAGEDI-NP 650 Query: 234 RCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L +F + GL T+ +T +L + + + + S+ Sbjct: 651 GSPKQLGDVMFGKMGLPGGQKTKTGAWSTTASILEDLAEAGHDFPRKILDWRQVSKLKST 710 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L + + T L A+ TGR S QN+P + + Sbjct: 711 YTDALPTHLLPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRK----------- 759 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R IA++G KLV AD + IE R+LA +A +AF+ G D++ Sbjct: 760 --------------IRRAFIAAKGHKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIH 805 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + F V + + R K + G++ Sbjct: 806 AMTASEMFGVPIKDMPGEVRRRAKAINF--------------GIIYGIS----------- 840 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A + K + ++ + + Sbjct: 841 -------------------AFGLANQLGIPREEAGAYIKKYFERFPGIRAYMDATRDFCR 881 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + +G GR Y D+ + + R Sbjct: 882 E---HGYVTTL-----------------------FGRKCHYPDIKASNP---SLRAFNER 912 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEF- 642 Q + DI+ M+ K ++L VHDE+V E PD++ Sbjct: 913 AAINARL------QGTAADIIRRAMIRMEDALTQKKLAARMLLQVHDELVFEVPDSEVDK 966 Query: 643 NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++ +M P+ A +PL+ + + + Sbjct: 967 TLPVIREVMEQAPFPATALSVPLRVDARAADNW 999 >gi|254673763|emb|CBA09444.1| DNA polymerase I [Neisseria meningitidis alpha275] Length = 931 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 110/700 (15%), Positives = 199/700 (28%), Gaps = 152/700 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V + + ++ + L Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 460 DELSERW--------LGLETITY----ESLCGKGAKQISFADVAIGQATEYAAQDADFAL 507 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 508 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL P Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + NR ++ + L + ++ T + TGR + QN+P + Sbjct: 627 IILQNR-SLAKLKSTYTDKLPDMISPRDNRVHTTYAQAVAITGRLASNNPNLQNIPIRTA 685 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 VR A G +V AD + IE R++A ++G Sbjct: 686 EGRR-------------------------VRRAFTAPPGSVIVSADYSQIELRIMAHLSG 720 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ + AF+ GED++ T A F AP V+ +QR K + L Y G + Sbjct: 721 DKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGLA 775 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L ++ + + + + + +E + G R K+ Sbjct: 776 KSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRNKN 833 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + +A G A KR + + R LV D+ Sbjct: 834 ANARA---GAERAAINAPMQGTASDLIKRAMIDVS----------------RWLVSDDLK 874 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + I+Q +VL Sbjct: 875 SKL-----------------------IMQ-------------VHDE---LVL-------- 887 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E +T+ L +M +PL AE + + Sbjct: 888 EVVETELDFVKEKLPQIMAKVGGGLLDVPLVAEVGVGENW 927 >gi|194333337|ref|YP_002015197.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271] gi|194311155|gb|ACF45550.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271] Length = 950 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 115/693 (16%), Positives = 204/693 (29%), Gaps = 150/693 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEA 60 +D ET S + ++ + C + +LK Sbjct: 380 ALDTETTSLN----------TFEAELVGISISVKPQEAVFIYCSPEGLKPEKALSILKPV 429 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALKL 118 LEN + N ++ VLK + + T++ + L + + Sbjct: 430 LENPAIEKWGQNLKYDILVLKNY-GIQLAPTG-FDTMLASYVINPEETHNLDDLAQRH-- 485 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 L R + P + Y D + + LE Sbjct: 486 ----------LQYRTTTYSELCGTGKKAVPLRQVPLEALKNYACQDADIALRLQNTLEKQ 535 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV-------- 230 QEL +L + I V VA+ + + K ++ SLT L Sbjct: 536 LKDNQELEWLCRNIEFPLVNVLVAMEYRGISLDTKHLEKTATKVASLTADLKERIYATAG 595 Query: 231 --SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF GL + T+ +T +VL + P A + R + Sbjct: 596 STFNIDSPKQLGEILFTRLGLPAKKTTKTGYSTNVQVLEELAMIHPIAQDILEYR-SLQK 654 Query: 286 SAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + L + +N G+L + + TGR S QN+P + +E Sbjct: 655 LRSTYIEALPKILNPATGKLHTSFNQHI-TATGRLSSSNPNLQNIPIRTELGKE------ 707 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +R IAS L+ AD + IE R+ A ++G++ ++AF Sbjct: 708 -------------------IRKAFIASTNRNFLLSADYSQIELRIAAELSGDKKLIEAFR 748 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 ED++ T F+ VT D R K + + Y Q + LN++ Sbjct: 749 NQEDIHAATAKAIFDT--EDVTSDMRRKAKEVNFGVLYG-----IQPYGLSMRLNISQKE 801 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 ++ ++ + E+ +G R A ++ + + Sbjct: 802 AKAIIDTYKSKYPGLFEALDALVRQAAENGFVTTLLGR--RRYIAALNSRNGNIRK---A 856 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 +A T G A K Sbjct: 857 AERAAMNTPVQGTAADIIK----------------------------------------- 875 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 Y L EN +Q K ++L VHDE+V ET + + Sbjct: 876 ---------YAMCLIENTMQ-------------EHKMHSTMLLQVHDELVFETNEEEHEK 913 Query: 644 AS-MLYHLMTSNPSWA--KGLPLKAEGYESKRY 673 M+ M K +P++ + K + Sbjct: 914 LETMVVASMKEAALVCGLKQVPVEVDTGIGKNW 946 >gi|325133441|gb|EGC56105.1| DNA polymerase I [Neisseria meningitidis M13399] Length = 931 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 113/701 (16%), Positives = 204/701 (29%), Gaps = 154/701 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V + + +++ + L Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDSMLASYIIESHLGHGL 459 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + G+ L E+ + A EY D Sbjct: 460 DELS------------GRWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFAL 507 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 508 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL P Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 684 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 VR A +G +V AD + IE R++A ++ Sbjct: 685 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 719 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F AP V+ +QR K + L Y G + Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 774 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + +E + G R K Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRNK 832 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + R LV D+ Sbjct: 833 NANARA---GAERAAINAPMQGTASDLIKRAMIDVS----------------RWLVSDDL 873 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + I+Q +VL Sbjct: 874 KSKL-----------------------IMQ-------------VHDE---LVL------- 887 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E +T+ L +M +PL AE + + Sbjct: 888 -EVVETELDFVKEKLPQIMAKVGGGLLDVPLVAEVGVGENW 927 >gi|225075916|ref|ZP_03719115.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens NRL30031/H210] gi|224952772|gb|EEG33981.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens NRL30031/H210] Length = 937 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 106/701 (15%), Positives = 193/701 (27%), Gaps = 148/701 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51 T+ ID ET S A + ++ + F H Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSQTAAPEQLDLQ 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V + + ++ + L Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 460 DELSERW--------LGLETITY----ESLCGKGAKQISFADVAIGQATEYAAQDADFAL 507 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 508 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL P Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + NR ++ + L E ++ T + TGR + QN+P + Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVAITGRLASNNPNLQNIPIRTA 685 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 VR A G +V AD + IE R++A ++G Sbjct: 686 EGRR-------------------------VRRAFTAPPGSVIVSADYSQIELRIMAHLSG 720 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ + AF+ GED++ T A F AP V+ +QR K + L Y G + Sbjct: 721 DKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGLA 775 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L ++ + + + + + +E + G K+ Sbjct: 776 KSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIHNKN 833 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + +A G A KR + + + Sbjct: 834 ANARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECE------------------ 872 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDEIV 633 D L ++ +VL Sbjct: 873 ---------ASLW--------------------DCLKSKLIMQVHDE---LVL------- 893 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P+ + L +M +PL AE + Sbjct: 894 -EVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGAGMNW 933 >gi|186473237|ref|YP_001860579.1| DNA polymerase I [Burkholderia phymatum STM815] gi|184195569|gb|ACC73533.1| DNA polymerase I [Burkholderia phymatum STM815] Length = 915 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 108/701 (15%), Positives = 194/701 (27%), Gaps = 162/701 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 D ET S + ++ + + H + Sbjct: 341 SFDTETTSLDPMV----------AQIVGISIAVEAGKAAYIPVAHHGPDAPVQLPRDEVL 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ D V + ++ VL + + TL+ + Sbjct: 391 AKLKPWLESRDKKKVGQHLKYDEQVLANY-GITMDGIE-HDTLLQSYVLESHRPHDMDNL 448 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E A EY D +T + + Sbjct: 449 ALRHLGLKTI----------KYEDVAGKGASQIGFDEVALDKASEYAAEDADITLRLHQT 498 Query: 175 LEPL------SSKEQELWYL-----DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P + + + G +DV + + +L+++ Sbjct: 499 LYPQIASEVPLDHVYRNIEVPTSRVLRKMERNGVLIDVEKLRVQSNEIATRLVELERQAY 558 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + T + T + VL + P + + Sbjct: 559 DLAGG-EFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKTILEH 617 Query: 280 RMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ + L +N S GR+ A TGR + QN+P + Sbjct: 618 R-GLSKLKSTYTDKLPRMVNASTGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTGEGRR 675 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA G KLV AD + IE R++A ++G++ Sbjct: 676 -------------------------IREAFIAPPGHKLVSADYSQIELRIMAHISGDEAL 710 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF+ GED++ T + F+V P +V+ DQR I KV+ L Y + L Sbjct: 711 LRAFKQGEDIHRATASEVFSVTPLEVSNDQRRIAKVINFGLIYGMS-----SFGLASNLG 765 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + A + + + + + + + G R ++ Sbjct: 766 ITRDAAKLYIDRYFARYPGVAAYMENTRTSAKMKGYVETVFGR---------RLWLPEIN 816 Query: 519 E----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +A G A K + + ++ Sbjct: 817 GGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVQKWIEESG------------------ 858 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDEIV 633 + M+ +VL V Sbjct: 859 -----------------------------------IRTRMIMQVHDE---LVLEV----- 875 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 PD + + L LM +PL AE + Sbjct: 876 ---PDDELSDVRKRLPELMCGVAQ--LKVPLVAEVGAGANW 911 >gi|218662905|ref|ZP_03518835.1| DNA polymerase I [Rhizobium etli IE4771] Length = 564 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 97/642 (15%), Positives = 185/642 (28%), Gaps = 132/642 (20%) Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SA 108 LK LE+ V VA N ++ +LK I + T++++ Sbjct: 31 DALPRLKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLDAGTGAHG 87 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + + E G I + N Y D VT Sbjct: 88 MDPLSEKF--------LGHTPIPY----KDVAGSGKANVTFDLVDIDRATHYAAEDADVT 135 Query: 169 REIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ L+P E+ L + + RG VD + L+ + +L Sbjct: 136 LRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGVTVDRQILSRLSGELAQGAARL 195 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274 + E+ +L + ++L LF + GL T+ +T VL + Sbjct: 196 EDEIYTLAG-ERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDLAAAGFELP 254 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + + ++ + L ++ + + T L ++ TGR S QN+P + Sbjct: 255 RKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTA 314 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 + +R+ I++ G KL+ AD + IE RVLA +A Sbjct: 315 EGRK-------------------------IRTAFISTPGHKLISADYSQIELRVLAHVAE 349 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 KAFE G D++ T + F V + + R K + + Y A Sbjct: 350 IPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISA-----FGLA 404 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L++ E + ++ + + + G R + Sbjct: 405 NQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYP--EIRSSN 462 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V +A G A +R + + Sbjct: 463 PSVRAFN---ERAAINAPIQGSAADVIRRAMIKMEPALAQAGL----------------- 502 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 R ++ DE++ Sbjct: 503 ------------AERVRM---------------------LLQVH-----------DELIF 518 Query: 635 ETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 E D D ++ +M + P+ +PL+ + + + Sbjct: 519 EVEDEDVDKAMPIIVSVMENATMPALEMRVPLRVDARAATNW 560 >gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 999 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 102/716 (14%), Positives = 201/716 (28%), Gaps = 167/716 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---------VELWDCVHDP--- 51 + D ET S A ++ F+ D+ H Sbjct: 401 VAFDTETTSLD----------AMQAELVGFSLAIADNTADPTGTKIRAAYIPLAHKNGVG 450 Query: 52 ---------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 LK LE+ V VA N ++ +++ I + T Sbjct: 451 DLLGGGLADNQISMRDALPRLKSLLEDAAVLKVAQNLKYDYLLMQRY---GIETRSFDDT 507 Query: 97 LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 ++++ + + E G I + N Sbjct: 508 MLISYVLDAGTGAHGMDPLSEKF--------LGHTPIPY----KDVAGSGKANVTFDLVD 555 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVAL 203 Y D VT ++ L+P E+ L + + RG VD + Sbjct: 556 IDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQI 615 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTC 259 L+ + +L+ E+ L + ++L LF + GL T+ +T Sbjct: 616 LSRLSGELAQGAARLEDEIYVLAG-ERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTS 674 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 +VL + + + + ++ + L ++++ + T L ++ TGR Sbjct: 675 AQVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHAETKRVHTSYSLASTTTGRL 734 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+P + + +R+ I++ G KL+ A Sbjct: 735 SSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHKLISA 769 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA +A KAFE G D++ T + F V + + R K + + Sbjct: 770 DYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGI 829 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y A L++ E + ++ + + + Sbjct: 830 IYGISA-----FGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF 884 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 G R + V +A G A +R + + + Sbjct: 885 GRRINYP--EIRSSNPSVRAFN---ERAAINAPIQGSAADVIRRAMIRMEPALAEVGL-- 937 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 +R + ++ Sbjct: 938 ---------------GDRVRM---------------------------------LLQVHD 949 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++ V DE E ++ +M + P+ +PL+ + + + Sbjct: 950 E---LIFEVEDE-------DVEKAMPIIVSVMENATMPALEMRVPLRVDARAASNW 995 >gi|163845937|ref|YP_001633981.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|222523662|ref|YP_002568132.1| DNA polymerase I [Chloroflexus sp. Y-400-fl] gi|6015002|sp|O08307|DPO1_CHLAA RecName: Full=DNA polymerase I; Short=POL I gi|1913934|emb|CAA72997.1| DNA-directed DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|163667226|gb|ABY33592.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|222447541|gb|ACM51807.1| DNA polymerase I [Chloroflexus sp. Y-400-fl] Length = 942 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 114/704 (16%), Positives = 206/704 (29%), Gaps = 167/704 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVL 57 D E S + ++ + V H + L Sbjct: 362 AFDTECTSLQPVAS----------DLVGISIAIAPDTVCYIPVGHQSETQVPCGEVVTAL 411 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEAL 116 N AHN+ F+ VL I + T++ A G LK + Sbjct: 412 APFFANPQQPKFAHNAKFDMEVLA---GAGIKVSGLAFDTMIAAAMLGKRQGLKDLAFYE 468 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + ++LI ++ Y D T + +RL+ Sbjct: 469 LKLPEPPTTIEDLI----------GRGNKQISFAEVPVEQAAPYAAADALYTLRLTERLQ 518 Query: 177 PLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E L + + G +D L + L + + Sbjct: 519 RQLEAEPALHDLYYRVELPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQQ 578 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL--------EDLTETTCQRVLSSNKKLTPQAIQVF 277 G + ++L LF G+ + + VL +L P A + Sbjct: 579 AGGP-FNINSGQQLNDVLFGRLGIDPRAHGLSKLKSGGYSITAEVLEELSQLYPIAADIL 637 Query: 278 NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ ++ L + +N GR+ + LGA+ TGR S QN+P + Sbjct: 638 TYRQ-LTKLKSTYIDALPDLVNPRTGRIHTSYNQLGAA-TGRLSSNNPNLQNIPVRTEEG 695 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 E +R +A G + V AD + IE RVLA M+G++ Sbjct: 696 RE-------------------------IRRAFVAEPGWRFVAADYSQIELRVLAHMSGDE 730 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF+ G D++ T +R F V P V K+QR + K + + G Sbjct: 731 NLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVI--------------YG 776 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A + ++ + Sbjct: 777 ISAFGLAQRLGIE------------------------------RDLARQLIDNLFAQFPG 806 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + Q E ++G + GR V D+ + Sbjct: 807 IRRY---IDQTLEFGRQHGY-----------------------VQTLFGRRRVMEDLRAS 840 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + R+ +Q + D++ M+N +A ++L VHD Sbjct: 841 GARRAAAERE----------AINAPIQGTAADLMKMAMVNVHRALREQGLRTRLLLQVHD 890 Query: 631 EIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E++ E P+ + A +L +M+S +PL + Sbjct: 891 ELIAEAPEDEVEPAARLLRDVMSS-VYRDLVVPLSVNLEVGPNW 933 >gi|124026294|ref|YP_001015410.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A] gi|123961362|gb|ABM76145.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A] Length = 986 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 111/719 (15%), Positives = 211/719 (29%), Gaps = 166/719 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD--------- 50 + ID ET S ++ F F + + H Sbjct: 385 KPIAIDTETTSLNPFK----------AELVGLGFCFGESLKDIVYIPIGHKNKEDDLIEI 434 Query: 51 --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 + L++ + + N+ ++R +L + + + TL+ Sbjct: 435 NQINQLKIEEVIFALQDWFSSNENPKTLQNAKYDRLILLRH-GIILN-GVVMDTLLADYI 492 Query: 103 NGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 +L + K ++ + + + + Y Sbjct: 493 CDATLKHSLDEIAYR---------------EFGFKPKSFSDIVKKGEDFSYVDIKSASMY 537 Query: 161 CKGDVTVTREIFKRLEPLS------------SKEQELWYLDQTINDRGYCVDVALAHTLN 208 C DV +TR++ EQ L + I G +D L+ Sbjct: 538 CGMDVYLTRKLAIIYINRLKETSIKLINLLKEVEQPLEQVLAEIESTGIIIDTPYLKDLS 597 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVL 263 + +++E+ ++ + ++L LF + L + T+ +T VL Sbjct: 598 LELTKRLNTIEKEVYNIAGS-EFNLSSPKQLGELLFEKLDLDRKKSRKTKTGWSTDVAVL 656 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGC 322 + P + +R S+ ++ L + + + GR+ + TGR S Sbjct: 657 EKLESDHPIVKIIIEHR-TISKLLNTYVDALPKLIEKETGRVHTDFNQAV-TATGRLSSS 714 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 QN+P + S +R + + KL+ AD + Sbjct: 715 NPNLQNIPVRTE-------------------------FSRRIRKAFLPQKDWKLLSADYS 749 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R+L ++GE+ A+ ED++ T F + D+R IGK + + Y Sbjct: 750 QIELRILTHLSGEEVLKNAYLKNEDVHSLTAKILF--EKDAIDADERRIGKTINFGVIYG 807 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 GA Q+ A +TG++L + E + F + + + +G Sbjct: 808 MGA---QRFARSTGVSL--IEAKYFLSKFKERYPAVFKFLEYQERLALSQGFVETLLGR- 861 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + + + Sbjct: 862 -----RRYFHFNKN---------------------------------------------- 870 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 GR L TT R+ E +Q S DI+ M+ A Sbjct: 871 GLGRLLGTP----PNEIDLTTARRAGMEAQQLRAAANAPIQGSSADIIKLAMIQLHSALR 926 Query: 621 ----GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 I+L VHDE+V E P E ++ + M + +PL E + Sbjct: 927 ETGLAAKILLQVHDELVLEVNPKDLEETKLLVQNTMENAVK--LSVPLIVETGVGVNWM 983 >gi|293397866|ref|ZP_06642072.1| DNA polymerase I [Neisseria gonorrhoeae F62] gi|291611812|gb|EFF40881.1| DNA polymerase I [Neisseria gonorrhoeae F62] Length = 930 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 107/700 (15%), Positives = 195/700 (27%), Gaps = 153/700 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 352 DTIGIDTETTSLD----------AMNAELVGISIAFQAGEAVYIPVGHSLTAVPEQLDLQ 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V + + ++ + L Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNNIA-GDAMLASYIIESHLGHGL 459 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + G+ L E+ + A EY D Sbjct: 460 DELS------------GRWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFAL 507 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + RL E + + + G +D A + + E KL+Q Sbjct: 508 RLEARLRAQMDDKQLEMYEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQ 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL P Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + NR ++ + L E ++ T + TGR + QN+P + Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVAITGRLASNNPNLQNIPIRTA 685 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 VR A G +V AD + IE R++A ++G Sbjct: 686 EGRR-------------------------VRRAFTAPPGSVIVSADYSQIELRIMAHLSG 720 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ + AF++GED++ T A F AP V+ +QR K + L Y G + Sbjct: 721 DKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGLA 775 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L ++ + + + + + +E + G R K+ Sbjct: 776 KSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNKN 833 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + +A G A KR + + D Sbjct: 834 ANARA---GAERAAINAPMQGTASDLIKRAMINVRNWLSDGI------------------ 872 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 M +VL E+V Sbjct: 873 -----------------------------GS-----KLVM-QVHDE---LVL----EVV- 889 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +T+ L +M +PL AE + + Sbjct: 890 ---ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926 >gi|261823708|ref|YP_003261814.1| DNA polymerase I [Pectobacterium wasabiae WPP163] gi|261607721|gb|ACX90207.1| DNA polymerase I [Pectobacterium wasabiae WPP163] Length = 929 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 106/700 (15%), Positives = 198/700 (28%), Gaps = 153/700 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51 D ET LT +I +F HD Sbjct: 351 DVFAFDTETDGLDTLT----------ANLIGLSFAIKPGEAAYLPLAHDYLDAPDQLDRA 400 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + +LK LE+ + + N F++ V++ ++D+ T++ + Sbjct: 401 TVLALLKPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIA-FDTMLESYVLDSVAGRHD 458 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + ++ E L + E ++ A G Y D VT Sbjct: 459 MDSLAERY------------LKHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVT 506 Query: 169 REIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + + L L + I G +D A+ ++ + + Sbjct: 507 LHLHQTLWGKLQPHADLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKELTTRLAE 566 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQA 273 L+ + L + ++L+ L+ + L +T + VL+ P Sbjct: 567 LEIQAYELAG-EEFNLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPLP 625 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + R ++ + L +N + T + TGR S QN+P + Sbjct: 626 KLILEYR-GLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIPVRN 684 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R IA +G +V AD + IE R++A ++ Sbjct: 685 DEGRR-------------------------IRQAFIAPKGYSIVAADYSQIELRIMAHLS 719 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ L AF G D++ T + F +A +VT +QR K + L Y A Sbjct: 720 GDEGLLNAFANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSA-----FGL 774 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + LN+ N E + +++ ++ EH G R Sbjct: 775 SRQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNA 834 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 +R +A G A K+ + + + Sbjct: 835 MAR-----KGAERAAINAPMQGTAADIIKKAMIAIDDWLQKD------------------ 871 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 K+ M +V + D IV Sbjct: 872 --------------------APKV-------------KMIM-QVHDE---LVFEIDDSIV 894 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + S + LM +PL+ + + Sbjct: 895 -------EESISKIKVLMEGCMQ--LNVPLQVDIGTGMNW 925 >gi|298484257|ref|ZP_07002421.1| DNA polymerase type I [Bacteroides sp. D22] gi|295085932|emb|CBK67455.1| DNA polymerase I [Bacteroides xylanisolvens XB1A] gi|298269582|gb|EFI11179.1| DNA polymerase type I [Bacteroides sp. D22] Length = 949 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 94/694 (13%), Positives = 194/694 (27%), Gaps = 147/694 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 L +D ET + D ++ +F ++ D + + Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 + EN + V N ++ VL+ + T++ + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNYGAVV--KGPLFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + ELI K + Y D +T ++ L Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDVYLYACEDADITLKLKNVL 533 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E E L + I G +D + + ++++E+ L Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKEIYEL 593 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL S + P ++ +R Sbjct: 594 AG-ETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 652 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L +N GR+ + + TGR S QN+P + +E Sbjct: 653 -GLKKLLGTYIDALPLLINPRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE- 709 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I EG AD + IE R++A ++ ++ + Sbjct: 710 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF + D++ T A+ + + V D R K + Y +N+ Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISV-----FGLAERMNV 800 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + E + + + + E + Sbjct: 801 DRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIF-------------------- 840 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++R +P + + + + Sbjct: 841 ---------------------HRKRFLPDINSRNAVVRGYAERNA--------INAPIQG 871 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 ++ Y E +QA M+ L VHDE+ P Sbjct: 872 SAADIIKVAMARIYQRFQAEG-IQA------K--MI----------LQVHDELNFSVPVN 912 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + ++ +PLKA+ K + Sbjct: 913 EKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 945 >gi|59802404|ref|YP_209116.1| hypothetical protein NGO2103 [Neisseria gonorrhoeae FA 1090] gi|254492832|ref|ZP_05106003.1| DNA polymerase I [Neisseria gonorrhoeae 1291] gi|260441414|ref|ZP_05795230.1| hypothetical protein NgonDG_10092 [Neisseria gonorrhoeae DGI2] gi|268593903|ref|ZP_06128070.1| DNA polymerase I [Neisseria gonorrhoeae 35/02] gi|268595960|ref|ZP_06130127.1| DNA polymerase I [Neisseria gonorrhoeae FA19] gi|268598080|ref|ZP_06132247.1| DNA polymerase I [Neisseria gonorrhoeae MS11] gi|268600421|ref|ZP_06134588.1| DNA polymerase I [Neisseria gonorrhoeae PID18] gi|268602653|ref|ZP_06136820.1| DNA polymerase I [Neisseria gonorrhoeae PID1] gi|268681202|ref|ZP_06148064.1| DNA polymerase I [Neisseria gonorrhoeae PID332] gi|268683373|ref|ZP_06150235.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679] gi|268685682|ref|ZP_06152544.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035] gi|291044776|ref|ZP_06570485.1| DNA polymerase I [Neisseria gonorrhoeae DGI2] gi|59719299|gb|AAW90704.1| putative DNA polymerase I [Neisseria gonorrhoeae FA 1090] gi|226511872|gb|EEH61217.1| DNA polymerase I [Neisseria gonorrhoeae 1291] gi|268547292|gb|EEZ42710.1| DNA polymerase I [Neisseria gonorrhoeae 35/02] gi|268549748|gb|EEZ44767.1| DNA polymerase I [Neisseria gonorrhoeae FA19] gi|268582211|gb|EEZ46887.1| DNA polymerase I [Neisseria gonorrhoeae MS11] gi|268584552|gb|EEZ49228.1| DNA polymerase I [Neisseria gonorrhoeae PID18] gi|268586784|gb|EEZ51460.1| DNA polymerase I [Neisseria gonorrhoeae PID1] gi|268621486|gb|EEZ53886.1| DNA polymerase I [Neisseria gonorrhoeae PID332] gi|268623657|gb|EEZ56057.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679] gi|268625966|gb|EEZ58366.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035] gi|291011670|gb|EFE03666.1| DNA polymerase I [Neisseria gonorrhoeae DGI2] Length = 930 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 107/700 (15%), Positives = 195/700 (27%), Gaps = 153/700 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 352 DTIGIDTETTSLD----------AMNAELVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V + + ++ + L Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNNIA-GDAMLASYIIESHLGHGL 459 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + G+ L E+ + A EY D Sbjct: 460 DELS------------GRWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFAL 507 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + RL E + + + G +D A + + E KL+Q Sbjct: 508 RLEARLRAQMDDKQLEMYEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQ 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL P Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + NR ++ + L E ++ T + TGR + QN+P + Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVAITGRLASNNPNLQNIPIRTA 685 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 VR A G +V AD + IE R++A ++G Sbjct: 686 EGRR-------------------------VRRAFTAPPGSVIVSADYSQIELRIMAHLSG 720 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ + AF++GED++ T A F AP V+ +QR K + L Y G + Sbjct: 721 DKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGLA 775 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L ++ + + + + + +E + G R K+ Sbjct: 776 KSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNKN 833 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + +A G A KR + + D Sbjct: 834 ANARA---GAERAAINAPMQGTASDLIKRAMINVRNWLSDGI------------------ 872 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 M +VL E+V Sbjct: 873 -----------------------------GS-----KLVM-QVHDE---LVL----EVV- 889 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +T+ L +M +PL AE + + Sbjct: 890 ---ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926 >gi|255693278|ref|ZP_05416953.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565] gi|260620957|gb|EEX43828.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565] Length = 930 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 93/694 (13%), Positives = 193/694 (27%), Gaps = 147/694 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 L +D ET + D ++ +F ++ + + Sbjct: 358 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPANQEETLKIVNEF 407 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 + EN V N ++ VL+ +++ T++ + + E Sbjct: 408 RPVFENESSLKVGQNIKYDMIVLQNY-GVEVK-GPLFDTMIAHYVLQPELRHGMDYLAEI 465 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + ELI K A + Y D VT ++ L Sbjct: 466 YLH--YQTIHIDELIG---------PKGKNQKNMRDLAPKDVYRYACEDADVTLKLKNVL 514 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E E L + I G +D + + ++++E+ L Sbjct: 515 EKELKENGTERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTEQMERIEKEIYDL 574 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL S + P ++ +R Sbjct: 575 AG-ETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 633 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L + +N GR+ + + TGR S QN+P + +E Sbjct: 634 -GLKKLLGTYIDALPQLINPRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE- 690 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I EG AD + IE R++A ++ ++ + Sbjct: 691 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 726 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF + D++ T A+ + + +V D R K + Y +N+ Sbjct: 727 DAFLSNHDIHAATAAKIYKIGLKEVDSDMRRKAKTANFGIIYGISV-----FGLAERMNV 781 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + E + + + E + Sbjct: 782 ERKEAKELIDGYFETYPGVKAYMDQSIRVAQEKGYVETIF-------------------- 821 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++R +P + + + + Sbjct: 822 ---------------------HRKRFLPDINSRNAVVRGYAERNA--------INAPIQG 852 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 ++ Y E + M+ L VHDE+ P Sbjct: 853 SAADIIKVAMARIYQRFRAEG---------IKTKMI----------LQVHDELNFSVPID 893 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + ++ +PLKA+ K + Sbjct: 894 EKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 926 >gi|254804208|ref|YP_003082429.1| DNA polymerase I [Neisseria meningitidis alpha14] gi|254667750|emb|CBA03667.1| DNA polymerase I [Neisseria meningitidis alpha14] Length = 937 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 106/701 (15%), Positives = 195/701 (27%), Gaps = 148/701 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK L N + + N +++ V + + ++ + L Sbjct: 402 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 460 DELSERW--------LGLETITY----ESLCGKGAKQISFADVAIGQATEYAAQDADFAL 507 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 508 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL P Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + NR ++ + L E ++ T + TGR + QN+P + Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVAITGRLASNNPNLQNIPIRTA 685 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 VR A +G +V AD + IE R++A ++G Sbjct: 686 EGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLSG 720 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ + AF+ GED++ T A F AP V+ +QR K + L Y G + Sbjct: 721 DKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGLA 775 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L ++ + + + + + +E + G R K+ Sbjct: 776 KSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRNKN 833 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + +A G A KR + + + Sbjct: 834 ANARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECE------------------ 872 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDEIV 633 D L ++ +VL Sbjct: 873 ---------ASLW--------------------DCLKSKLIMQVHDE---LVL------- 893 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P+ + L +M +PL AE + + Sbjct: 894 -EVPEAELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 933 >gi|194100055|ref|YP_002003195.1| PolA [Neisseria gonorrhoeae NCCP11945] gi|239998054|ref|ZP_04717978.1| hypothetical protein Ngon3_01018 [Neisseria gonorrhoeae 35/02] gi|240013236|ref|ZP_04720149.1| hypothetical protein NgonD_01055 [Neisseria gonorrhoeae DGI18] gi|240015682|ref|ZP_04722222.1| hypothetical protein NgonFA_00693 [Neisseria gonorrhoeae FA6140] gi|240079818|ref|ZP_04724361.1| hypothetical protein NgonF_00666 [Neisseria gonorrhoeae FA19] gi|240112026|ref|ZP_04726516.1| hypothetical protein NgonM_00295 [Neisseria gonorrhoeae MS11] gi|240114773|ref|ZP_04728835.1| hypothetical protein NgonPID1_00698 [Neisseria gonorrhoeae PID18] gi|240116973|ref|ZP_04731035.1| hypothetical protein NgonPID_00683 [Neisseria gonorrhoeae PID1] gi|240120307|ref|ZP_04733269.1| hypothetical protein NgonPI_00730 [Neisseria gonorrhoeae PID24-1] gi|240122611|ref|ZP_04735567.1| hypothetical protein NgonP_01466 [Neisseria gonorrhoeae PID332] gi|240124799|ref|ZP_04737685.1| hypothetical protein NgonSK_00995 [Neisseria gonorrhoeae SK-92-679] gi|240127317|ref|ZP_04739978.1| hypothetical protein NgonS_01450 [Neisseria gonorrhoeae SK-93-1035] gi|193935345|gb|ACF31169.1| PolA [Neisseria gonorrhoeae NCCP11945] gi|317165496|gb|ADV09037.1| hypothetical protein NGTW08_2086 [Neisseria gonorrhoeae TCDC-NG08107] Length = 908 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 107/700 (15%), Positives = 195/700 (27%), Gaps = 153/700 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 330 DTIGIDTETTSLD----------AMNAELVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 379 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V + + ++ + L Sbjct: 380 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNNIA-GDAMLASYIIESHLGHGL 437 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + G+ L E+ + A EY D Sbjct: 438 DELS------------GRWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFAL 485 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + RL E + + + G +D A + + E KL+Q Sbjct: 486 RLEARLRAQMDDKQLEMYEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQ 545 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL P Sbjct: 546 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 604 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + NR ++ + L E ++ T + TGR + QN+P + Sbjct: 605 IILQNR-SLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVAITGRLASNNPNLQNIPIRTA 663 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 VR A G +V AD + IE R++A ++G Sbjct: 664 EGRR-------------------------VRRAFTAPPGSVIVSADYSQIELRIMAHLSG 698 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ + AF++GED++ T A F AP V+ +QR K + L Y G + Sbjct: 699 DKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGLA 753 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L ++ + + + + + +E + G R K+ Sbjct: 754 KSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNKN 811 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + +A G A KR + + D Sbjct: 812 ANARA---GAERAAINAPMQGTASDLIKRAMINVRNWLSDGI------------------ 850 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 M +VL E+V Sbjct: 851 -----------------------------GS-----KLVM-QVHDE---LVL----EVV- 867 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +T+ L +M +PL AE + + Sbjct: 868 ---ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 904 >gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1016 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 104/716 (14%), Positives = 199/716 (27%), Gaps = 167/716 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---------VELWDCVHDP--- 51 + D ET S A ++ F+ D+ VH Sbjct: 418 VAFDTETTSLD----------AMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVG 467 Query: 52 ---------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 LK LE+ V VA N ++ +LK I + T Sbjct: 468 DLLGGGLAENQIPMRDALPRLKALLEDEAVLKVAQNLKYDYLLLKRY---GIETRSFDDT 524 Query: 97 LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 ++++ + + E G I + N Sbjct: 525 MLISYVLDAGTGAHGMDPLSEKF--------LGHTPIPY----KDVAGSGKANVTFDLVD 572 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVAL 203 Y D VT ++ L+P E+ L + + RG VD + Sbjct: 573 IDRATHYAAEDAEVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQI 632 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTC 259 L+ + +L+ E+ L + ++L LF + GL T+ +T Sbjct: 633 LSRLSGELAQSAARLEDEIYVLAG-ERFNIGSPKQLGDILFGKMGLSGGSKTKTGQWSTS 691 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 +VL + + + + ++ + L ++ + + T L ++ TGR Sbjct: 692 AQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRL 751 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+P + + +R+ I++ KL+ A Sbjct: 752 SSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPRHKLISA 786 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA +A KAFE G D++ T + F V + + R K + + Sbjct: 787 DYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGI 846 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y A L++ E + ++ + + + Sbjct: 847 IYGISA-----FGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF 901 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 G R + V +A G A +R + + + Sbjct: 902 GRRINYP--EIRSSNPSVRAFN---ERAAINAPIQGSAADVIRRAMIKIEPALVEVGL-- 954 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 D + ++ Sbjct: 955 -----------------------------------------------ADRVRM-LLQVHD 966 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++ V DE E ++ +M + P+ +PL+ + + + Sbjct: 967 E---LIFEVEDE-------DVEKAMPVIVSVMENATMPALEMRVPLRVDARAATNW 1012 >gi|320539310|ref|ZP_08038980.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Serratia symbiotica str. Tucson] gi|320030702|gb|EFW12711.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Serratia symbiotica str. Tucson] Length = 933 Score = 357 bits (915), Expect = 5e-96, Method: Composition-based stats. Identities = 107/698 (15%), Positives = 205/698 (29%), Gaps = 154/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54 D ET L+ +I +F HD + Sbjct: 357 AFDTETDGLDTLS----------ANLIGLSFAIAPGEAAYLPVAHDYLDAPAQLDRASVL 406 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 + LK LE+ V V N F+ VL +++ + T++ + + Sbjct: 407 ERLKLLLEDEKVLKVGQNLKFDMGVLARY-GINLRGIAY-DTMLESYVLDSVGGRHDMDN 464 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + G + I E ++ A Y D VT + Sbjct: 465 LADRY--------LGHKTITF----EEIAGKGKNQLTFNQIALAQAALYAAEDADVTLRL 512 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + P + L + I G +D A+ +Q + +L+ Sbjct: 513 HLAMWPQLKQSAELLRVFNEIDMPLVPVLSHIERTGVLIDPAILSVHSQELTKRLGELEI 572 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + L++L+ L+ + L + T +T + VL+ P + Sbjct: 573 QAHELAG-EPFNLVSLKQLQAILYEKQKLPVLKKTPGGAPSTNEEVLAELALDYPLPKVI 631 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + + TGR S QN+P + Sbjct: 632 LEYR-GLAKLKTTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSSDPNLQNIPVRNDE 689 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA EG ++V AD + IE R++A ++ + Sbjct: 690 DRR-------------------------IRQAFIAPEGYRIVAADYSQIELRIMAHLSQD 724 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 LKAF G+D++ T A F V +V +QR K + L Y A Sbjct: 725 AGLLKAFAEGKDIHRATAAEVFGVPLDKVASEQRRSAKAINFGLIYGMSA-----FGLAR 779 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + + E + ++ ++ E G R + Sbjct: 780 QLGVPRGEAQRYMDRYFERYPGVLDYMERTRQQAAEQGYVTTLDGR--RLYLPDARSSN- 836 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + +A G A KR + + +++ ++ + Sbjct: 837 GMRR--KAAERAAINAPMQGTAADIIKRAMIEVDAWIQEQGQPLVRM------------- 881 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 I+Q +V VH+ ++ Sbjct: 882 -------------------------IMQ-------------VHDE---LVFEVHESVI-- 898 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + ++ + LM + + A +PLK + + Sbjct: 899 -----DASSQRIRELMEGSMALA--VPLKVDVGVGANW 929 >gi|293368661|ref|ZP_06615268.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f] gi|292636303|gb|EFF54788.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f] Length = 949 Score = 357 bits (915), Expect = 5e-96, Method: Composition-based stats. Identities = 96/694 (13%), Positives = 193/694 (27%), Gaps = 147/694 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 L +D ET + D ++ +F ++ D + Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 + EN + V N ++ VL+ + T++ + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GATVK-GPLFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + ELI K + Y D VT ++ L Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDVYLYACEDADVTLKLKNVL 533 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E E L + I G +D + + ++++E+ L Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIYEL 593 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL S + P ++ +R Sbjct: 594 AG-ETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 652 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L + +N GR+ + + TGR S QN+P + +E Sbjct: 653 -GLKKLLGTYIDALPQLINPRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE- 709 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I EG AD + IE R++A ++ ++ + Sbjct: 710 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF + D++ T A+ + V D R K + Y +N+ Sbjct: 746 DAFLSNHDIHAATAAKIYKTDLKDVGSDMRRKAKTANFGIIYGISV-----FGLAERMNV 800 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + E + + + + E + +R +++ V Sbjct: 801 DRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHR--KRFLPDINSRNAVVRG 858 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G A Sbjct: 859 Y---AERNAINAPIQGSAADII-------------------------------------- 877 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 ++ Y E +QA M+ L VHDE+ P Sbjct: 878 ------KVAMARIYQRFQAEG-IQA------K--MI----------LQVHDELNFSVPVN 912 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + ++ +PLKA+ + + Sbjct: 913 EKERVEEIVIE-EMEKAYRMHVPLKADCGWGRNW 945 >gi|226225416|ref|YP_002759522.1| DNA polymerase I [Gemmatimonas aurantiaca T-27] gi|226088607|dbj|BAH37052.1| DNA polymerase I [Gemmatimonas aurantiaca T-27] Length = 984 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 104/727 (14%), Positives = 192/727 (26%), Gaps = 175/727 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49 + ID ET A ++ + H Sbjct: 372 YIAIDTETVIEP---GAPFDVDALRSRLVGLSIAVAPGEAYYLPFAHRRDDGSGNLALLA 428 Query: 50 -------------------------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84 D L+ LE+ VT +A N+ ++ VL Sbjct: 429 GDTGTGIVGRRINAGAPEPVNLPPFDSDACAPLRAMLEDPSVTKIAQNAKYDLLVL-RSS 487 Query: 85 NLDIPIHRWICTLVLARSNGL---PSALKAVG-EALKLSSQKMEEGKELIARFCKGETHE 140 + + T++ + L + E L + + Sbjct: 488 GVRVAGVG-FDTMLASYVLDPGRRSHGLDLLALEQLGHTMTAYDTL-------------V 533 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQ 190 P +Y DV +T + +LEP+ E L + Sbjct: 534 GKGKTQLPFDVAPVDTARDYSCEDVDITMRLRAKLEPMLAEHALLSLFQEIEVPLVSVLA 593 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G +D+ +L ER +++Q + + + KL+ LF + GL Sbjct: 594 EMEWEGIAIDLDWFASLKARFAAERGRVEQAIYAEAG-EEFNINSNPKLRAILFEKLGLP 652 Query: 251 LEDLT---ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 ++ T +T VL + + + ++ L ++ R T Sbjct: 653 VKKKTATGPSTDASVLQELAEEGHVLPTLLMEYREIFKLEGTYIDALPRLVHPRDRRLHT 712 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 S TGR S QN+P + +R Sbjct: 713 SYSQTVSATGRLSSHDPNLQNIPIRRELGRD-------------------------IRRG 747 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + EG +L+ AD + IE RVLA ++ + + AF+ G D++ T A F V VT + Sbjct: 748 FVPREGWRLLSADYSQIELRVLAHLSADPAFVSAFKAGGDIHRQTAAIIFGVPLEDVTSE 807 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 RA K + A Y GA A + L + + E + F Sbjct: 808 MRARAKTINFATIYGQGAHALSR-----QLRITNAEAKAFIETYFERFAGVRGFLDQCVV 862 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + + R ++++ + + + G A K + Sbjct: 863 DARARGYVETLFKR--RRYIPELKERNFNIRAFG---ERVAQNAPIQGSAADLIKIAMIN 917 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + R ++ Sbjct: 918 V----------------------------------------RNAIDAE--------GLAS 929 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 ++ DE+V E P + +++ M +PL E Sbjct: 930 ----RMLLQVH-----------DELVFELPVEEADTLSALVKREMEGAA--VLNVPLLVE 972 Query: 667 GYESKRY 673 + Sbjct: 973 MGLGTDW 979 >gi|153807182|ref|ZP_01959850.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185] gi|149130302|gb|EDM21512.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185] Length = 949 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 96/692 (13%), Positives = 193/692 (27%), Gaps = 143/692 (20%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 L +D ET + D ++ +F ++ D + Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPADQEEALKIVNEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 + EN + V N ++ VL+ + + T++ L+ Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GVQVK-GPLFDTMIAHYVLQP---------ELR 475 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + E E K A + Y D VT ++ LE Sbjct: 476 HGMDYLAEIYLRYQTIHIDELIGPKGKNQKNMRDLAPKDVYRYACEDADVTLKLKNVLEK 535 Query: 178 LS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E L + I G +D + + +++E+ L Sbjct: 536 ELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMENIEKEIYELAG 595 Query: 228 GLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 + +++ LF + + T+T T + VL S + P ++ +R Sbjct: 596 -ETFNIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR-G 653 Query: 283 ASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ L + +N GR+ + + TGR S QN+P + +E Sbjct: 654 LKKLLGTYIDALPQLINPRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE--- 709 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R I EG AD + IE R++A ++ ++ + A Sbjct: 710 ----------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDA 747 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F + D++ T A+ + + V D R K + Y +N+ Sbjct: 748 FLSNHDIHAATAAKIYKIDLQDVGSDMRRKAKTANFGIIYGISV-----FGLAERMNVER 802 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + E + + + + E + Sbjct: 803 KEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIF---------------------- 840 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 ++R +P + + + + Sbjct: 841 -------------------HRKRFLPDINSRNAVVRGYAERNA--------INAPIQGSA 873 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 ++ Y TE +QA M+ L VHDE+ P ++ Sbjct: 874 ADIIKVAMARIYQRFQTEG-IQA------K--MI----------LQVHDELNFSVPVEEK 914 Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + ++ +PLKA+ K + Sbjct: 915 ERVEEIVIE-EMEHAYRMHVPLKADCGWGKNW 945 >gi|319900544|ref|YP_004160272.1| DNA polymerase I [Bacteroides helcogenes P 36-108] gi|319415575|gb|ADV42686.1| DNA polymerase I [Bacteroides helcogenes P 36-108] Length = 952 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 96/693 (13%), Positives = 195/693 (28%), Gaps = 147/693 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58 L ID ET + + ++ +F ++ + L+ Sbjct: 381 ILSIDTETTGTEPM----------EAELVGMSFSDAENQAYYVPVPPIREEALKIVNELR 430 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 EN V N ++ VL+ + + T++ + + E Sbjct: 431 PLYENEKSLKVGQNIKYDMIVLQNYE-IQVK-GPLFDTMLAHYVLQPELRHNMDYLAEIY 488 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + ELI K + Y D VT ++ LE Sbjct: 489 LH--YQTIHIDELIG---------PRGKNQKNMRDLSPEEVYRYACEDADVTLKLKNILE 537 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + I G +D ++ + ++++E+ +L Sbjct: 538 KELKEQGGEHLFHEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTIRLQEIEKEIYAL- 596 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF + + T+T T + VL S + ++ R Sbjct: 597 ADETFNIASPKQVGEILFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHGIIGKILEYR- 655 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + +++L + +N T + TGR S QN+P +E Sbjct: 656 GLKKLLSTYIDSLPQLINPRTGHIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKE--- 712 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R I +G + AD + IE R++A ++ ++ + A Sbjct: 713 ----------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSEDRNMIDA 750 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F +G D++ T A+ + + VT D R K + Y +N++ Sbjct: 751 FRSGYDIHAATAAKIYKTDISDVTADMRRKAKTANFGIIYGISV-----FGLAERMNVSR 805 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + E + + + E+ + +R +++ V Sbjct: 806 QEAKELIDGYFETYPQVKEYMDRSIRIARENGYVETIFHR--KRFLPDINSRNAVVRGY- 862 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + G A K Sbjct: 863 --AERNAINAPIQGSAADIIKVAMAH---------------------------------- 886 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 + ++ N L M+ L VHDE+ P +++ Sbjct: 887 ----------IHRRFVSNN---------LKAKMI----------LQVHDELNFSVPASEK 917 Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + M ++ +PLKA+ K + Sbjct: 918 EIVQKIVIEEMEHA--YSMHVPLKADCGWGKNW 948 >gi|158426088|ref|YP_001527380.1| DNA polymerase A [Azorhizobium caulinodans ORS 571] gi|158332977|dbj|BAF90462.1| DNA polymerase A [Azorhizobium caulinodans ORS 571] Length = 1020 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 103/705 (14%), Positives = 187/705 (26%), Gaps = 156/705 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50 + D ET S + ++ + + H Sbjct: 433 VAFDTETTSLDPM----------QADLVGVSLALAPNEACYIPLAHVGAGDGLFTEGLLP 482 Query: 51 -----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 LK LE+ + HN ++ VL I + + CT+ ++ + Sbjct: 483 GQIPFNDALAALKGMLEDGGTLKIGHNVKYDAAVLARH---GITVAPYDCTMCMSYALDA 539 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 ++ K L R Y D Sbjct: 540 GRG--------GHGMDEL-SIKYLGHTPIAFTEVAGKGKSQITFDRVPLEAATAYAAEDA 590 Query: 166 TVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 VT +++ L+P E + L + + RG +D A L+ Sbjct: 591 DVTLRLWRVLKPRLPSEGMTTVYETLERPLIAVLARMEARGISIDRATLARLSSEFAQGA 650 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTP 271 +L+ E+ L + + +++ LF + L T +T VL + Sbjct: 651 ARLEDEISGLAGEKI-NVGSPKQIGDLLFGKMQLPGATKTPTGAWSTKANVLDELAEAGH 709 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + Q + S+ + L +N T L A+ TGR S QN+P Sbjct: 710 ELPQKILAWRQLSKLRSTYTDALPNYVNPTTHRVHTSYALAATTTGRLSSSEPNLQNIPI 769 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + +R +A G KLV AD + IE R+LA Sbjct: 770 RTEEGRR-------------------------IRRAFVAVPGTKLVSADYSQIELRLLAE 804 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +A +AF G D++ T + F V + + R K + + Y A Sbjct: 805 IAEIPALRQAFRDGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA-----F 859 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 L + E + + + EH + G C A Sbjct: 860 GLANQLGIPRDEAGQYIKRYFERFPGIRAYMDETRAYCREHGYVETLFGRRCHYPDIA-- 917 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + + +A G A +R + + D Sbjct: 918 ASNPSIRAFN---ERAAINARLQGTAADIIRRAMIRMEGALADAGL-------------- 960 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 +R ++ Sbjct: 961 ---------------------------------SAR-----MLLQVHDE----------- 971 Query: 632 IVCETPDTDEFN-ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 +V E PD + ++ +M + P+ +PL+ E + + Sbjct: 972 LVFEVPDAEVEATLPVVRRVMETAARPAVELAVPLQVEARAADNW 1016 >gi|304388549|ref|ZP_07370650.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091] gi|304337469|gb|EFM03637.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091] Length = 975 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 112/701 (15%), Positives = 204/701 (29%), Gaps = 155/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 397 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 446 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V + + ++ + L Sbjct: 447 DVLGHLKPYLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 504 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 505 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 552 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 553 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 612 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 + + + ++L+ LF + G+ + L + +T + VL P Sbjct: 613 QAYA-AADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 671 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 672 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 729 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 VR A +G +V AD + IE R++A ++ Sbjct: 730 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 764 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F AP V+ +QR K + L Y G + Sbjct: 765 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 819 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + +E + G R K Sbjct: 820 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 877 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + R+ + + Sbjct: 878 NTNARA---GAERAAINAPMQGTASDLIKRAMIDV-----------------RNCLSDGI 917 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 G+ M +VL E+V Sbjct: 918 GS-----------------------------------KLVM-QVHDE---LVL----EVV 934 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +T+ L +M +PL AE + + Sbjct: 935 ----ETELDFVKEKLPQIMAKVGGGLLDVPLVAEVGVGENW 971 >gi|162149305|ref|YP_001603766.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|209544963|ref|YP_002277192.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|161787882|emb|CAP57480.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|209532640|gb|ACI52577.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] Length = 943 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 95/719 (13%), Positives = 176/719 (24%), Gaps = 175/719 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------------- 49 ID ET L ++ + H Sbjct: 346 AIDTETDGLDPLR----------AGLVGISLAVAPGRACYIPLAHTAEPPPPQLLPDLLL 395 Query: 50 ------------DPVM-----PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 P + +L L + V + N+ F+ VL Sbjct: 396 EPAPQDDAPDPVGPQLETGLALAILGPLLADASVLKIFQNAKFDLLVLTRAG--APQPAP 453 Query: 93 WICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 T++++ + + + G I P Sbjct: 454 VDDTMLISYAQFAGRHGQGMDELSRLY--------LGHTPIPYD----EVTGTGRNRVPF 501 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCV 199 R Y D VT ++ L P L + + G + Sbjct: 502 ARVDVARATAYAAEDADVTLRLWLSLRPTLRIHHALALYEELERPLVAVLADMERAGIAI 561 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-- 257 DV ++ +++ E+++L + ++L LF E GL ++ Sbjct: 562 DVVELRRMSADFATRMAQMEAEIQALAG-RSFNVGSPKQLGEILFDEMGLPGGKRMKSGA 620 Query: 258 --TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 T VL + ++ + LV+ + D T + + Sbjct: 621 WGTDSSVLQDLADQGHDLPGRILAWRQLAKLKSTYADALVKQADPDTARVHTSFQMAITS 680 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P + +R +A+ G Sbjct: 681 TGRLSSNEPNLQNIPIRTEEG-------------------------GRIRRAFVAAPGHV 715 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ AD + IE R+LA +A +AF G+D++ T + F + + R K + Sbjct: 716 LLSADYSQIELRLLAHVADIPALREAFALGQDIHARTASEVFGIPIEGMDPLTRRRAKAI 775 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + Y A L + ++ + + +++ + Sbjct: 776 NFGIIYGISA-----FGLGRQLGIPPGEARAYIDAYFARYPGIRAYMETVKQEAKDQGYV 830 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 G C A R R + G A KR V L + Sbjct: 831 TTPFGRRCWVPGIADRSAVRR-----AYAERQAINAPLQGGAADIIKRAMVRLPHALASA 885 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 GR L + Sbjct: 886 G------LDGRLL----------------------------------------------L 893 Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ E + +++ +M S S +PL E + Sbjct: 894 QVHDE-----------LLFEVRAGQQDALSALVKQVMESAAS--LSVPLVVETGTGANW 939 >gi|296314737|ref|ZP_06864678.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768] gi|296838474|gb|EFH22412.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768] Length = 930 Score = 356 bits (913), Expect = 8e-96, Method: Composition-based stats. Identities = 116/701 (16%), Positives = 205/701 (29%), Gaps = 154/701 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A D ++ + F H Sbjct: 351 DTIGIDTETTSLD----------AMDASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 400 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V + + ++ + L Sbjct: 401 DVLGRLKPHLENPVLKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 458 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 459 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 506 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 507 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 566 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL P Sbjct: 567 EAYA-AASQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 625 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 626 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 683 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 VR A +G +V AD + IE R++A ++ Sbjct: 684 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 718 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G + Sbjct: 719 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 773 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + +E + G R K Sbjct: 774 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRNK 831 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + R LV D+ Sbjct: 832 NANARA---GAERAAINAPMQGTASDLIKRAMIDVS----------------RWLVSDDL 872 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + I+Q +VL Sbjct: 873 KSKL-----------------------IMQ-------------VHDE---LVL------- 886 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P+ + L +M +PL AE + + Sbjct: 887 -EVPEAELDLVKEKLPQIMAKVDEGMLKVPLVAEVGVGENW 926 >gi|254670866|emb|CBA07349.1| DNA polymerase I [Neisseria meningitidis alpha153] Length = 930 Score = 356 bits (913), Expect = 9e-96, Method: Composition-based stats. Identities = 113/701 (16%), Positives = 204/701 (29%), Gaps = 155/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 352 DTIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V + + ++ + L Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 460 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIEQATEYAAQDADFAL 507 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 508 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL P Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 684 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 VR A +G +V AD + IE R++A ++ Sbjct: 685 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 719 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F AP V+ +QR K + L Y G + Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 774 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + +E + G R K Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 832 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + R+ + + Sbjct: 833 NANARA---GAERAAINAPMQGTASDLIKRAMIDV-----------------RNCLSDGI 872 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 G+ M +VL E+V Sbjct: 873 GS-----------------------------------KLVM-QVHDE---LVL----EVV 889 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +T+ L +M +PL AE + + Sbjct: 890 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926 >gi|300021892|ref|YP_003754503.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888] gi|299523713|gb|ADJ22182.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888] Length = 995 Score = 355 bits (912), Expect = 9e-96, Method: Composition-based stats. Identities = 107/715 (14%), Positives = 199/715 (27%), Gaps = 164/715 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53 + D ET L D ++ + H D Sbjct: 396 VAFDTETTDLSAL----------DAELVGISLAVAPGEACYIPLGHTGPSGDLFGGDDNR 445 Query: 54 PQVLK---------EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 PQ L LE+ V + N ++ V+K I I + T++L+ + Sbjct: 446 PQQLAANEALALIGPLLEDPSVLKIGQNIKYDALVMKR---RGIEIVSFDDTMLLSYALD 502 Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + A+ E G + +K EY Sbjct: 503 GGRGQHGMDALAERH--------LGHMCMTFAQAMGHAPGAKKSDKTFAAMPLDKATEYA 554 Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT ++ L+P + E+ L + + G VD + L+ Sbjct: 555 AEDADVTMRLWMALKPRLAAERMATVYETLERPLVPVIVGMEHAGIKVDRDILSRLSHAF 614 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK 267 +L++E+ L + ++L LF L T++ T +L Sbjct: 615 AQRTVRLEEEINGLVGHK-FNLGSPKQLGELLFDRLKLPGGKKTKSGQWETRANLLDDLA 673 Query: 268 KLTPQ------AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 I + ++ + L +N++ T LGA+ TGR + Sbjct: 674 ANEEIDGDARRLINTMLEWRQMTKLKSTYTDALPAYINAETGRIHTSYALGATTTGRLAS 733 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 QN+P ++ E +R+ IA +G +L+ AD Sbjct: 734 SDPNLQNIPIRTKEGRE-------------------------IRTAFIADKGMQLISADY 768 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE RVLA +A KAF G D++ T + F V + + R K + + Y Sbjct: 769 SQIELRVLAHVADIPQLKKAFAEGLDIHAMTASEMFGVPVKDMPSEVRRRAKAINFGIIY 828 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 A L+++ + + + ++ ++ H + G Sbjct: 829 GISA-----FGLANQLSISREEASDYIKTYFQRFPGIRDYMDATKKQVHAHGHVETIFGR 883 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 + K+ + L +A G A +R + + D Sbjct: 884 RIHYPEIN--TKNPSMRGF---LERAAINAPIQGSAADIIRRAMIRMPAALVDA-----K 933 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 L S R L + Sbjct: 934 LSSARML----------------------------------------------LQVHDE- 946 Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKG--LPLKAEGYESKRY 673 +V E D + + +M + A +P+ + + + Sbjct: 947 ----------LVFEVADNEASALITTARRVMETAAEPALKLAVPIHVDAKAANNW 991 >gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756] gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756] Length = 894 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 100/699 (14%), Positives = 188/699 (26%), Gaps = 156/699 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---VELWDCVH--DPVMPQVLK 58 + ID ET S ++ F+ + + H +P+ + Sbjct: 317 VAIDTETSSLDP----------HAAELVGFSLAWFEGDRTRAVYVPLGHREGKQIPRDVA 366 Query: 59 -----EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKA 111 LE+ +A N+ F+ + L TL+ + L + Sbjct: 367 LALLGPWLEDGSKAKLAQNAKFDWQIF-WAQGLRPRGLA-RDTLLESYVLDSTAAHDLDS 424 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E I+ + + Y D V + Sbjct: 425 LAERY--------LQHRNISY----AELTGKGRQARSFAAVDIASATAYAAEDAEVCLRV 472 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P + L + + G +DV + L++ +D ++ Sbjct: 473 DAQMWPQIRRHEGLARVFRDIEMPLVEVLARMEWAGVRIDVDVLKRLSEELDTRMATVES 532 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 E + + ++++T LF + GL + T +T + VL+ K + Sbjct: 533 EAFAAAGQR-FNLNSPKQIQTILFDKMGLPVLKKTPGGQPSTNEDVLAELAKQADLPRLI 591 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R ++ + L + + GR+ A+ TGR S QN+P S Sbjct: 592 LDYR-GLAKLKNTYADALPQMIQERTGRVHTHYHQAVAA-TGRLSSSDPNLQNIPVRSDL 649 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G L+ AD + IE R++A ++G+ Sbjct: 650 GRR-------------------------IRQAFVAEPGHLLISADYSQIELRIMAHLSGD 684 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF G D++ T A F + QVT +QR K + L Y Sbjct: 685 AGLRQAFARGLDIHRATAAEVFAIPLEQVTPEQRRAAKAINFGLIYGQTP-----YGLAQ 739 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + E + + + + + G R ++ Sbjct: 740 QLGVGQGEAKAYMERYFERYPGVREYMENTRRLARQQGYVETLFGR--RLYLPEIRSQNP 797 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + L+ GR L Sbjct: 798 ARRNY---AERAAINAPMQGTAADLIKLAMIAVD------AWLLAQTDHGRML------- 841 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 + ++ E Sbjct: 842 ---------------------------------------LQVHDE-----------LILE 851 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ A ML M A +PL + Sbjct: 852 VPEKAVDAACQMLREKMEGVAELA--VPLTVGLGVGANW 888 >gi|156741494|ref|YP_001431623.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941] gi|156232822|gb|ABU57605.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941] Length = 972 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 113/712 (15%), Positives = 204/712 (28%), Gaps = 175/712 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVMPQ 55 + D ETR L ++ + H + Sbjct: 388 VAFDTETRGMNPLRD----------DLVGLSLATVPGRAWYIPVGHTTGEMQLPRDRVIA 437 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114 L+ + VAHN+ F+ VL+ +P+ T++ A LK + Sbjct: 438 ALRSFFADPARPKVAHNAKFDIEVLERA---GMPVAGLSFDTMLAAGLLDKRRNLKDLAF 494 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 ++ ++ +LI Y D +T + Sbjct: 495 YELELAEPLDAIGDLI----------GKGKNQVTFAEVPIARATRYAAADADMTLRLQPA 544 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 LE E L + + G +DV L + + E +++Q++ Sbjct: 545 LEAKLRAAGSLADMFYRLEMPLVPVLVRMEQSGILLDVPYMRALGERMGRELAQIEQQIF 604 Query: 224 SLTYGLVSSSRCLEKLKTWLFL-ETGLHLE------DLTETTCQRVLSSN--KKLTPQAI 274 ++ + ++L LF + L + + L T Sbjct: 605 AIAG-KPFNINSGDQLSEVLFGPKINLPTTGLERTRTGRYSLTAQALEELQASDTTGIIE 663 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + +R S+ ++ L +N + GR+ LGA+ TGR S QN+P + Sbjct: 664 LILRHRR-LSKLKSTYVDELPALVNPETGRVHTDYNQLGAA-TGRLSSNSPNLQNIPTRT 721 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 E VR IA+ G L+ AD + IE RVLA + Sbjct: 722 EEGRE-------------------------VRRGFIAAPGHVLIAADYSQIELRVLAHIT 756 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G+ ++ F G D++ T AR F V V K+QR I K + + Y Sbjct: 757 GDPNLIQTFIEGRDIHAATAARLFGVGFNAVDKNQRRIAKTVVFGVIY-----GISPFGL 811 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L + + + Sbjct: 812 AQRL---------------------------------------GISREQARNLIDSLFNQ 832 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 R+ + + + E G + GR D+ Sbjct: 833 FPRIRDY---IDRTLETGRNEGY-----------------------VQSLFGRRRPMFDL 866 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL------T 627 + + RE +Q+ + DI+ M+ L Sbjct: 867 RTS----GPRRQAAEREAINHP------IQSTAADIMKLAMIAVDAELRRRRLRTRMLLQ 916 Query: 628 VHDEIVCETPDTDEFN-ASMLYHLMTSN-----PSWAKGLPLKAEGYESKRY 673 VHDE++ E P+ + +++ M P +A +PL+ E + + Sbjct: 917 VHDELIFEAPEAEVDEVVALVRERMEGVLSDMHPPFA--VPLRVEIEKGSNW 966 >gi|85713433|ref|ZP_01044423.1| DNA polymerase I [Nitrobacter sp. Nb-311A] gi|85699337|gb|EAQ37204.1| DNA polymerase I [Nitrobacter sp. Nb-311A] Length = 1020 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 97/690 (14%), Positives = 194/690 (28%), Gaps = 160/690 (23%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDP--------------------VMPQVLKEALENTDV 66 + + + H ++LK LE+ Sbjct: 444 QAELAGLSLALAPNDACYIPLGHKQAGDSAGLFAAGLAPDQIAIRDALELLKPILESGGH 503 Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG 126 + N F +L I + +++ + + S K G Sbjct: 504 LKIGLNIKFSAVLLAQH---GIVMQNHDDVELISYTLDAGRGSHDLA-----SLAKRWLG 555 Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------- 179 ++ + A Y +T +++ L+P Sbjct: 556 HTTLS----HGELTGSGRNRLAVDQVAIDRATAYAAEYADMTLRLWQVLKPRLVAERMNA 611 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + E+ + + RG +D + L+ + +L+ E++ L + + Sbjct: 612 VYETLERPMTATLARMERRGITIDRQVLSRLSGELAQTAARLEAEIQQLAGEPI-NVGSP 670 Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +++ +F + GL T+ +T +VL + + + + S+ + Sbjct: 671 KQIGDIMFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHDFPRKILDWRQVSKLKSTYTD 730 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L E +N R T L A+ TGR S QN+P + + Sbjct: 731 ALPEYVNPQTRRVHTTYALAATTTGRLSSNEPNLQNIPVRNEEGRK-------------- 776 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R IA+ G +LV AD + IE R+LA +A +AF G D++ T Sbjct: 777 -----------IRRAFIAAPGHRLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMT 825 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 + F V + + R K + G++ Sbjct: 826 ASEMFGVPVQGMPGEIRRRAKAINF--------------GIIYGIS-------------- 857 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 A + K + ++ + + + Sbjct: 858 ----------------AFGLANQLGIPREEAAAYIKKYFERFPGIRAYMDATRDFCRE-- 899 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 +G GR Y D+ + R Sbjct: 900 -HGYVTTL-----------------------FGRKCHYPDIKAPNP---SHRAFNERAAI 932 Query: 593 YGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN-AS 645 Q + DI+ M+ K ++L VHDE++ E PD + Sbjct: 933 NARL------QGSAADIIRRAMVRMDDALAAKKLSARMLLQVHDELIFEVPDEEVAATLP 986 Query: 646 MLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++ H+M P+ +PL+ + + + Sbjct: 987 VVQHVMQDAPFPAVLLSVPLQVDARAADNW 1016 >gi|261393312|emb|CAX50944.1| DNA polymerase I (POL I) [Neisseria meningitidis 8013] Length = 930 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 111/701 (15%), Positives = 204/701 (29%), Gaps = 155/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 352 DTIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V + + +++ + L Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDSMLASYIIESHLGHGL 459 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + G+ L E+ + A EY D Sbjct: 460 DELS------------GRWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 507 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 508 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL P Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 684 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 VR A +G +V AD + IE R++A ++ Sbjct: 685 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 719 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F AP V+ +QR K + L Y G + Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 774 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + +E + G R K Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 832 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + R+ + + Sbjct: 833 NTNARA---GAERAAINAPMQGTASDLIKRAMIDV-----------------RNCLSDGI 872 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 G+ M +VL E+V Sbjct: 873 GS-----------------------------------KLVM-QVHDE---LVL----EVV 889 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +T+ L +M +PL AE + + Sbjct: 890 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926 >gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568] gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568] Length = 934 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 109/702 (15%), Positives = 203/702 (28%), Gaps = 162/702 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54 D ET LT +I +F HD + Sbjct: 358 AFDTETDGLDTLT----------ANLIGLSFAIAPGEAAYLPVAHDYLDAPTQLDRAHVL 407 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 LK LE+ V N F+ ++L ++ + T++ + + + Sbjct: 408 ATLKPLLEDEKALKVGQNLKFDMSLLARY-DITLRGIA-FDTMLESYVLDSVGGRHDMDS 465 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + G + + E + ++ A Y D VT ++ Sbjct: 466 LSDRY--------LGHKTVTF----EEIAGKGKKQLTFNQIALEQAAPYAAEDADVTLQL 513 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + P E L + I G +D ++ T + + +L+ Sbjct: 514 HLAMWPQLKESAELLTVFNQIEMPLLPVLSHIERTGVLIDQSILATHSIELTKRLAELEI 573 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 574 QAHEL-AEEPFNLASTKQLQAILYEKQKLPILKKTPGGAPSTNEEVLAELALDYPLPKVI 632 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L +N GR+ + + TGR S QN+P + Sbjct: 633 LEYR-GLAKLKTTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSSDPNLQNIPVRNDE 690 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA EG ++V AD + IE R++A ++ + Sbjct: 691 GRR-------------------------IRQAFIAPEGYRIVAADYSQIELRIMAHLSQD 725 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + LKAF GED++ T A F + +VT +QR K + L Y A Sbjct: 726 EGLLKAFAAGEDIHRATAAEVFGLPLDKVTNEQRRSAKAINFGLIYGMSA-----FGLAR 780 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + + E + + ++ G R Sbjct: 781 QLGIPRGEAQRYMDLYFERYPGVLEYMERTRQQAASQGYVSTLDGR---------RLYLP 831 Query: 516 RVSE----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 VS +A G A KR + + + + ++ + Sbjct: 832 DVSSSNGMRRKAAERAAINAPMQGTAADIIKRAMIEVDAWLQAQEKPLVRM--------- 882 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 I+Q +V VH E Sbjct: 883 -----------------------------IMQ-------------VHDE---LVFEVH-E 896 Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V E + + LM ++ + A +PLK + + Sbjct: 897 SVLE------ESNQRIRELMENSMALA--VPLKVDVGVGANW 930 >gi|75674555|ref|YP_316976.1| DNA polymerase I [Nitrobacter winogradskyi Nb-255] gi|74419425|gb|ABA03624.1| DNA polymerase A [Nitrobacter winogradskyi Nb-255] Length = 1010 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 97/688 (14%), Positives = 194/688 (28%), Gaps = 160/688 (23%) Query: 29 CVILFAFGFDDHPVELWDCVHDP--------------------VMPQVLKEALENTDVTI 68 + A + H ++LK LE+ Sbjct: 436 ELSGIALALAPNHACYIPLSHKQSGDSAGLFAAGLAPDQIAIRDALELLKPILESRGHLK 495 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 + N F +L I + +++ + + S K G Sbjct: 496 IGLNVKFSAVLLAQH---GIVMQNHDDIELISYALDAGRGSHDLA-----SLAKRWLGHA 547 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--------- 179 ++ + A Y +T +++ L+P Sbjct: 548 TVS----HGELTGSGRNRLAFDQVAIDRATAYAAEYADMTLRLWQVLKPRLVAERMNTVY 603 Query: 180 -SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E+ + + RG +D + L+ +L+ E++ L + + ++ Sbjct: 604 ETLERPMIATLAQMERRGITIDRQVLSRLSGEFAQSAARLEAEIQQLAGEPI-NVGSPKQ 662 Query: 239 LKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 + +F + GL T+ +T ++L + + + + S+ + L Sbjct: 663 IGEIMFGKMGLPGGSKTKTGAWSTSAQILDELAEQGHDFPRKILDWRQVSKLKSTYTDAL 722 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 E ++ R T L A+ TGR S QN+P + + Sbjct: 723 PEYVHPQTRRVHTTYALAATTTGRLSSNEPNLQNIPVRNEEGRK---------------- 766 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R IA+ G KLV AD + IE R+LA +A +AF G D++ T + Sbjct: 767 ---------IRRAFIAAPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMTAS 817 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 F V + + R K + G++ Sbjct: 818 EMFGVPVQGMPGEIRRRAKAINF--------------GIIYGIS---------------- 847 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 A + K + ++ + + + + + Sbjct: 848 --------------AFGLANQLGIPREEAAAYIKKYFERFPGIRAYMDATREFCRE---H 890 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 G GR Y D+ + + R Sbjct: 891 GYVTTL-----------------------FGRKCHYPDIKSPNP---SHRAFNERAAINA 924 Query: 595 GKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN-ASML 647 Q + DI+ M A ++L VHDE++ E PD + ++ Sbjct: 925 RL------QGSAADIIRRAMARMDDALAARNLSARMLLQVHDELIFEVPDDEVAATLPVV 978 Query: 648 YHLMTSN--PSWAKGLPLKAEGYESKRY 673 H+M P+ +PL+ + + + Sbjct: 979 QHVMQDAPFPAVLLSVPLQVDARAADNW 1006 >gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H] gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H] Length = 936 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 101/697 (14%), Positives = 196/697 (28%), Gaps = 152/697 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + HD + Sbjct: 360 AFDTETTSVHYMK----------AELVGVSFAIEVGKAAYVPLTHDYEDAPEQLDKEWVL 409 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113 LK LE+ + + N ++ VL DI + T++ + +V Sbjct: 410 AQLKPLLESKTIKKIGQNLKYDANVLSHY---DIALQGIEFDTMIESYCYN------SVA 460 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + K L + E + ++ G Y D +T + Sbjct: 461 TRHNMDALAL---KYLDYQTVHFEDVAGKGAKQLTFNQIDIEKAGHYAAEDADITLRLHH 517 Query: 174 RLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + P E L + + G +D + + + +L+ E Sbjct: 518 AIFPALAETASMLSVFNEIEMPLLPVLARMEQTGVLIDSDILAEQSFTLGQRLDELEIEA 577 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 +L + ++L+ LF + + + T +T + VL P + Sbjct: 578 HNLAG-KSFNLASPKQLQQILFEDLKIPVIKKTPKGAPSTAEEVLQELALDYPLPKVILE 636 Query: 279 NRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 NR S+ + L + + RL + + TGR S QN+P S Sbjct: 637 NR-GLSKLKSTYTDKLPLMVSDKTNRLHTSYHQAV-TATGRLSSTDPNLQNIPIRSEQGR 694 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + +R IA + K+V D + IE R++A ++ ++ Sbjct: 695 K-------------------------IRQAFIAPKDHKIVAIDYSQIELRIMAHLSNDKG 729 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + AF G+D++ T A F V +VT DQR K + L Y A L Sbjct: 730 LVTAFSEGKDIHRATAAEIFAVELGEVTTDQRRSAKAINFGLIYGMSA-----FGLAKQL 784 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 ++ + + + + ++ E + G + + Sbjct: 785 HIGRQQAQEYQDKYFQRYPGVLTYMEDTRQQASEQGYVETLYGRRLYLPDINAKNGMRK- 843 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +A G A K+ + + ++N+ + Sbjct: 844 ----KAAERAAINAPMQGTAADIIKKAMLAVDSWLLEQNDDRI----------------- 882 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH-DEIVCET 636 M ++ +H D + E Sbjct: 883 ---------------------------------KMTM-QVHDE---LIFEIHQD--IVE- 902 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + L LM +PL AE + Sbjct: 903 -----ETTAKLVTLMNDAVE--LSVPLIAEAGIGDNW 932 >gi|91762671|ref|ZP_01264636.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002] gi|91718473|gb|EAS85123.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002] Length = 924 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 102/700 (14%), Positives = 200/700 (28%), Gaps = 151/700 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQ 55 L ID ET S A ++ + H + + Sbjct: 345 ELAIDTETSSLD----------AHQTDLVGISLSTKIGKACYIPIGHKFKGCLKKETVIK 394 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112 LK LE+ V + N F+ VL I ++ T++++ + + Sbjct: 395 KLKPLLEDKSVKKIGQNIKFDFIVLYKH---GINMNSMEDTMLMSYVLDAGKNRHNMDTL 451 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K KE + EY D +T ++ Sbjct: 452 SEIH--LQHKTISFKE----------IVGTGKKEINFSDVELDKAMEYAAEDADITYRLY 499 Query: 173 KRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 K E+ L + + G +D L++ + + +KL++E+ Sbjct: 500 KIFSKNLKLEKLTNIYEIFEKPLIKILAFMEIEGIKIDNKFLKVLSEKFEKKISKLEKEV 559 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 ++ + ++L ++ + + + T T VL + ++ Sbjct: 560 FKISKKK-FNIASPKQLGEIIYNDLKIAVLKKTRKGSFATNASVLEDLAFKGHEFPKLIL 618 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + + S+ + L E +N + + T L A+ TGR + QN+P S ++ Sbjct: 619 DWRQVSKLKNTYSDALPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIPIKSEDGKD 678 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA +G L+ AD IE R+LA +A + Sbjct: 679 -------------------------IRKAFIAEKGFTLISADYNQIEMRILADLAEVKEL 713 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 KAF ED++ T ++ FNV +V +D R K + + Y + +N Sbjct: 714 KKAFSNNEDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGIS-----QYGLAKQIN 768 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++ N+ ++ + + + + + G K+ V Sbjct: 769 VSNHEADEFLNAYFLKFPEIKIYMDNTIKFCRKSGYVTNIFGR--RSHFNGINDKNFNVR 826 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 +A G A R Sbjct: 827 NFQ---ERAAINAPIQGSASEIM-----------------------------------RL 848 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 + ++ K+ ++ DE++ E P Sbjct: 849 AMIRLNKKFESIKNNKSKI----------------LLQIH-----------DELIFEVPV 881 Query: 639 TDEFNA-SMLYHLMTSNPSWAK---GLPLKAEGYESKRYR 674 + N ++ MTS PL + + Sbjct: 882 KEVKNITEIIKDEMTSVTESDLHTFSTPLTVDVNTGDNWG 921 >gi|325131391|gb|EGC54100.1| DNA polymerase I [Neisseria meningitidis M6190] Length = 975 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 110/701 (15%), Positives = 201/701 (28%), Gaps = 155/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 397 NTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 446 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK L N + + N +++ V + + ++ + L Sbjct: 447 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 504 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 505 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 552 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 553 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 612 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 + + + ++L+ LF + G+ + L + +T + VL P Sbjct: 613 QAYA-AADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 671 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 672 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 729 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 VR A +G +V AD + IE R++A ++ Sbjct: 730 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 764 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F AP V+ +QR K + L Y G + Sbjct: 765 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 819 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + +E + G R K Sbjct: 820 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 877 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + R+ + + Sbjct: 878 NANARA---GAERAAINAPMQGTASDLIKRAMIDV-----------------RNCLSDGI 917 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 G+ M +VL Sbjct: 918 GS-----------------------------------KLVM-QVHDE---LVL------- 931 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E +T+ L +M +PL AE + + Sbjct: 932 -EVVETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 971 >gi|224534662|ref|ZP_03675234.1| DNA polymerase I family protein [Borrelia spielmanii A14S] gi|224513910|gb|EEF84232.1| DNA polymerase I family protein [Borrelia spielmanii A14S] Length = 908 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 99/701 (14%), Positives = 202/701 (28%), Gaps = 164/701 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54 + ID ET S + Y +I + F + + Sbjct: 341 KYISIDTETSS--------LDIYT--ARLIGISISFKEFEGYYIPIEARGKIYIEKHYII 390 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112 Q E+ + I+ N F+ +LK IP + T++ A +L + Sbjct: 391 QKFNNFFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K K + +++I +N + + Y D +T +F Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFAGISLEMATSYSSEDADITFRLF 492 Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 E + + + G +D + + E ++ E+ Sbjct: 493 NVFSKKLKEDSLDKLMHEIEMPFNNVIIEMEENGIYLDREYLKEYGKELGKELELIETEI 552 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + L L + + +T +VL S + + +R Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLRGQHESIENLIKHR 611 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L+E +N T + TGR + QN+P + Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTNFIQTKTATGRVTSINPNLQNIPIKDEKGRK-- 668 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R G + AD + IE +LA ++ ++ +K Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE +D++ T ++ F + ++T + R I K + ++ Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A E + ++ + ++ E Sbjct: 752 RL------------------------------AKELGITKEEAKGFIDSYFDSYPKIKEF 781 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 T R +++ +N Sbjct: 782 IINQINFVRNT--------------------------GYSETILKRRRYIKEINSNNYLE 815 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 + R +I+Q + DI+ M+ K I+L VHDE++ Sbjct: 816 RSA---AERISI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866 Query: 635 ETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRYR 674 E+P +E + + M + + PL+A K + Sbjct: 867 ESPIKEENEVKKILKIMMETAYTLTP--PLRANIETGKSWG 905 >gi|78049756|ref|YP_365931.1| DNA polymerase I [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038186|emb|CAJ25931.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 933 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 95/700 (13%), Positives = 177/700 (25%), Gaps = 159/700 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 D ET S L +I + + H Sbjct: 358 AFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHHFPGAPAQLDRTQAL 407 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 L L + V + + ++ V++ + + + TL+ + + + Sbjct: 408 AQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GVALAGYA-DDTLLESFVLNSGSARHDMDS 465 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + G + + E + P + + Y D +T + Sbjct: 466 LAKRY--------LGYDTVKY----EDVCGKGAKQIPFAQISLEDATRYAAEDADITLRL 513 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E L + I G CVD A + + Q Sbjct: 514 HRVLGPRLASEPDLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQ 573 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF E L +T + L + + Sbjct: 574 KATELAG-RSFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 632 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L E ++ GR+ + GA+ TGR S QN+P + Sbjct: 633 LEYR-GLAKLRSTYTDKLPEMVHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 690 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G+KL+ D + IE R++A ++G+ Sbjct: 691 GRR-------------------------IRRAFVAPAGRKLIACDYSQIELRIMAHLSGD 725 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+G D++ T A F V+ D+R K + L Y A Sbjct: 726 PGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSA-----FGLAR 780 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE-RVKKAWRQKH 514 L + + +F ++ + + G A Sbjct: 781 QLGIGRGEAQDYIALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINA----- 835 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +A G A KR V + Sbjct: 836 -GSQGQRAGAERAAINAPMQGTAADIIKRAMVNVDGW----------------------- 871 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 R ++ +V Sbjct: 872 --------IANHAQRAKM---------------------ILQVHDE-----------LVF 891 Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E S + M +PL + + Sbjct: 892 EADIDFVDTLLSEVTTRMAGAAE--LRVPLVVDSGVGDNW 929 >gi|254456142|ref|ZP_05069571.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211] gi|207083144|gb|EDZ60570.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211] Length = 924 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 97/700 (13%), Positives = 205/700 (29%), Gaps = 151/700 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQ 55 L +D ET S ++ + H + + Sbjct: 345 ELAVDTETNSLDP----------HQADLVGISLSSKVGKACYIPIGHKSSKCINKNDVIK 394 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112 LK LE+ V + N F+ VL I + T++++ + + Sbjct: 395 KLKPLLEDPSVKKIGQNIKFDFIVLFKQ---GIEMTSMEDTMLMSYVLDAGKNRHNMDTL 451 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E G + I+ + + +Y D +T ++ Sbjct: 452 SEIH--------LGHKTISF----KEIVGTGKKEINFSDVEIERAKDYAAEDADITFRLY 499 Query: 173 KRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 K+ E+ L + + G VD TL+ + + L++E+ Sbjct: 500 KKFSKNLKLEKMINIYEIFEKPLIKILAFMEMEGVEVDNKFLKTLSSKFEKKIKNLEKEI 559 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 ++ + ++L ++ + + T+ T VL + ++ Sbjct: 560 FKISKKD-FNIASPKQLGEIIYNDLKIAELKKTKKGSFATSASVLEDLAFKGHKFPKLVL 618 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + + S+ ++L E +N + + T L A+ TGR + QN+P S + Sbjct: 619 DWRQVSKLKNTYSDSLPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIPIKSEDGRD 678 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R + + L+ AD IE R+LA +A + Sbjct: 679 -------------------------IRKAFTSRKNHLLISADYNQIEMRILADLADVKEL 713 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 KAF+ ED++ T ++ FNV +V +DQR K + + Y + +N Sbjct: 714 KKAFKNDEDIHSLTASQIFNVDIKKVDQDQRRKAKAINFGIIYGIS-----QYGLAKQIN 768 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++ + ++ ++ + + + + + + G K+ V Sbjct: 769 VSNYEAEEFLDAYFAKFPEIKIYMNDTIKFCRKSGYVNNIFGR--RSHFNGINDKNFNVR 826 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 +A G A + + L DK N Sbjct: 827 NFQ---ERAAINAPIQGSASEIMRLAMIRLNKKLSDKKN--------------------- 862 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 +Q+ + ++ E++ E P Sbjct: 863 -----------------------IQS-------KMLLQIHD-----------ELIFEVPK 881 Query: 639 TDEFNA-SMLYHLMTSNPS---WAKGLPLKAEGYESKRYR 674 +E ++ M S + +PL + + Sbjct: 882 NNEKTMIKLIKDEMASVVKSDHHSFSIPLTVDINVGDNWG 921 >gi|325206887|gb|ADZ02340.1| DNA polymerase I [Neisseria meningitidis M04-240196] Length = 938 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 111/701 (15%), Positives = 204/701 (29%), Gaps = 147/701 (20%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V + + +++ + L Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDSMLASYIIESHLGHGL 459 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + G+ L E+ + A EY D Sbjct: 460 DELS------------GRWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 507 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 508 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL P Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 684 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + VR A +G +V AD + IE R++A ++ Sbjct: 685 EEGRK-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 719 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F AP V+ +QR K + L Y G + Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 774 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + + +E + G R K Sbjct: 775 AKSLGIDNLSAKNFIDRYFDRYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 832 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + + L Sbjct: 833 NANARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKL----- 884 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 I+Q +VL E+V Sbjct: 885 ---------------------------IMQ-------------VHDE---LVL----EVV 897 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +T+ L +M +PL AE + + Sbjct: 898 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 934 >gi|188995635|ref|YP_001929887.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277] gi|188595315|dbj|BAG34290.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277] Length = 926 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 96/692 (13%), Positives = 192/692 (27%), Gaps = 149/692 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----PQVLKEA 60 D ET S L ++ + D + +L+ Sbjct: 357 SFDTETDSKDALR----------ANIVAITLCAESGRAFFIPLPEDEEIGKRRLDLLRPL 406 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEALKL 118 +T + V N ++ VL +++ + T++ L + + E L Sbjct: 407 FADTAIGKVGQNMKYDIQVLSRY-GIEVR-GQLFDTMIAHYLLFPDLRHNMDEMAETL-- 462 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 G I + + + +Y D +T ++++RL + Sbjct: 463 ------LGYRTIHY----SDLVGSDKQEVHIRQVPLQNLADYAMEDADITWQLYERLNAM 512 Query: 179 SS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 S E L + + G +D + + E +++ E+ L Sbjct: 513 LSEAGMTSLFESIEMPLVPVLVDMERSGVKLDTEVLRRTASRLGEEMQRIEDEIYRLAGH 572 Query: 229 LVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + ++ T LF E + T++ T + +L ++ P + + R Sbjct: 573 S-FNINSPSQVGTVLFEELQITEKPKKTKSGSYSTNEEILVKLQEKHPIVRLILDYR-GI 630 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L E DG+L + A+ TGR S QN+P + L Sbjct: 631 KKLLSTYVEALPEMRYPDGKLHTSFNQTVAT-TGRLSSSNPNLQNIPIRTEVGRGL---- 685 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAF 402 R+ + + AD + IE R++A ++ ++ ++AF Sbjct: 686 ---------------------RAAFVPDNDECIFMSADYSQIELRLMAHLSEDESLIQAF 724 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 GED++ T ++ + + +VT D R K + Y A + LN++ Sbjct: 725 LHGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYGISA-----FGLSERLNISRT 779 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + + + G +R + ++ V Sbjct: 780 EAKALIEGYFASYPGVKAYMDRSIAEAKRQGYVTTLFGR--KRFLRDINSANAVVRGY-- 835 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + G A L + + Sbjct: 836 -AERNAINAPIQGSAADLI-------------------------KLAMIRIHEEITERKL 869 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 +R M+ L VHDE+ + Sbjct: 870 RSR----------------------------MI----------LQVHDELNFNVLRPEAA 891 Query: 643 NASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 L M + +PL AE E + Sbjct: 892 EVRELVRSCMEGVMP-SLRVPLIAEIGEGANW 922 >gi|219850431|ref|YP_002464864.1| DNA polymerase I [Chloroflexus aggregans DSM 9485] gi|219544690|gb|ACL26428.1| DNA polymerase I [Chloroflexus aggregans DSM 9485] Length = 936 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 109/710 (15%), Positives = 214/710 (30%), Gaps = 180/710 (25%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-------VMPQVL 57 D E S L G ++ A + H+ + L Sbjct: 360 AFDTECTS---LQAVGSH-------LVGIALAIAPNDAYYVPVGHEEGEQLPLADVVAAL 409 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEAL 116 + ++ AHN+ F+ VL + I + T++ A G LK + Sbjct: 410 GPLFADPNIPKFAHNAKFDAEVLA---GVGIQVAGLAFDTMIAAAMLGKRQGLKDLAFYE 466 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD------------ 164 + ++LI + Y D Sbjct: 467 LKLPEPPTTIEDLI----------GRGSKQISFAAVPIEQAAPYAAADALHTLLLTETLR 516 Query: 165 ----VTVTRE-IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 ++ R+E L + + G +D L + +L Sbjct: 517 GQLTTDTALRDLYYRVE------LPLIDVLTDMELTGILLDHEYLRELGKRFAQRIAELT 570 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHL--------EDLTETTCQRVLSSNKKLTP 271 +++ + G + ++L LF G++ + + VL +L P Sbjct: 571 EQIYAKAGGP-FNINSGQQLNEVLFERLGINPRDYGLSKLKSGGYSITAEVLEELSQLYP 629 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 A + R ++ ++ L + +N GR+ + +GA+ TGR S QN+P Sbjct: 630 IAADILAYRQ-LTKLKSTYIDALPQLVNPRTGRIHTSYNQIGAA-TGRLSSNNPNLQNIP 687 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 + E +R +A+ G + V AD + IE RVLA Sbjct: 688 VRTEEGRE-------------------------IRRAFVAAPGHRFVAADYSQIELRVLA 722 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++G++ + AF+ G D++ T +R F VAP QV K+QR + K + Sbjct: 723 HISGDENLIAAFQQGLDIHAATASRLFGVAPDQVDKNQRRVAKTVVF------------- 769 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 G++ A + ++ Sbjct: 770 -GVIYGISAFGLAQRLGIE------------------------------RDLARQLIDNL 798 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 ++ + ++ + + + + GR V Sbjct: 799 FEQFPGIRRYIDQ--------------------------TLAFGRQHGYVQTLFGRRRVM 832 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDI 624 D+ + + R+ +Q + DI+ M+ +A + Sbjct: 833 EDLRASGARRAAAERE----------AINAPIQGTAADIMKMAMVYVHRALRERGLRTRL 882 Query: 625 VLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 +L VHDE++ E P+ + A+ L +M++ + +PL + Sbjct: 883 LLQVHDELIAEAPEEEVPAAAHLLREVMSNT--YQLVVPLGVNLETGPNW 930 >gi|316985617|gb|EFV64564.1| DNA polymerase I [Neisseria meningitidis H44/76] gi|325139302|gb|EGC61843.1| DNA polymerase I [Neisseria meningitidis CU385] Length = 983 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 112/701 (15%), Positives = 202/701 (28%), Gaps = 147/701 (20%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 397 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 446 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK L N + + N +++ V + + ++ + L Sbjct: 447 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 504 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 505 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 552 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 553 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 612 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL P Sbjct: 613 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 671 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 672 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 729 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + VR A +G +V AD + IE R++A ++ Sbjct: 730 EEGRK-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 764 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F AP V+ +QR K + L Y G + Sbjct: 765 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 819 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + +E + G R K Sbjct: 820 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 877 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + + L Sbjct: 878 NANARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKL----- 929 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 I+Q +VL E+V Sbjct: 930 ---------------------------IMQ-------------VHDE---LVL----EVV 942 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +T+ L +M +PL AE + + Sbjct: 943 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 979 >gi|116073128|ref|ZP_01470390.1| DNA polymerase I [Synechococcus sp. RS9916] gi|116068433|gb|EAU74185.1| DNA polymerase I [Synechococcus sp. RS9916] Length = 1007 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 106/720 (14%), Positives = 206/720 (28%), Gaps = 165/720 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVH-------DPV-- 52 + +D ET ++ + + H Sbjct: 401 VAVDTETSDLNPFK----------AQLVGVGVCWGADLKDLAYIPVGHMAPAAPDGEDAA 450 Query: 53 ----------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 + Q L L ++D N+ ++R +L L + + TL+ Sbjct: 451 GEPEQLALDAVLQALAPWLASSDHPKALQNAKYDRLILLRH-GLTL-GGVVMDTLLADYL 508 Query: 103 NGLP--SALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 L + + ++ +L+ + + Sbjct: 509 RDAAAKHGLDLMAQRDYGITP---TLFTDLV--------GKAKDGKASSFAAVPVDQAAL 557 Query: 160 YCKGDVTVTREIFKRLEPLS------------SKEQELWYLDQTINDRGYCVDVALAHTL 207 YC DV +TR + L E L + + G +DV L Sbjct: 558 YCAMDVHLTRRLALDLRQQLTSMGEQLPALLEQVELPLEPVLALMEATGIRIDVPYLQEL 617 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTETTCQRV 262 + + +L+ E + + + ++L LF GL+ + +T V Sbjct: 618 SAELGATLERLETEAQDVVGTS-FNLASPKQLGELLFDTLGLNRKKSRRTKTGWSTDATV 676 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSG 321 L + P + +R+ S+ + L + + GR+ + TGR S Sbjct: 677 LEKLEGDHPVVPLLLEHRV-LSKLKSTYVEALPQLVEAETGRVHTDFNQAV-TATGRLSS 734 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 QN+P + S +R + EG +L+ AD Sbjct: 735 SNPNLQNIPVRTE-------------------------FSRRIRKAFLPQEGWQLLSADY 769 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R+L ++GE+ +A+ G+D++ T + +V+ D+R +GK + + Y Sbjct: 770 SQIELRILTHLSGEEVLQQAYRDGDDVHALTARLL--LEKDEVSADERRLGKTINFGVIY 827 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 GA Q+ A TG++ + + F + + +G Sbjct: 828 GMGA---QRFARETGVS--QVVAKDFLAKYKQRYPKVFAFLELQERLALSRGYVETILG- 881 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 R P + + L+ Sbjct: 882 ------------------------------------------RRRPFHFDRNGLGRLLGK 899 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620 P ++ + + Q R +Q S DI+ M+ A Sbjct: 900 DPL-------EIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKLAMVQLQTAL 946 Query: 621 -----GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE+V E + M + + +PL E + Sbjct: 947 QQQGLPAQLLLQVHDELVLEVEPAALDTVRQLVVQTMENAMT--LSVPLVVETGSGANWM 1004 >gi|118581241|ref|YP_902491.1| DNA polymerase I [Pelobacter propionicus DSM 2379] gi|118503951|gb|ABL00434.1| DNA polymerase I [Pelobacter propionicus DSM 2379] Length = 893 Score = 353 bits (906), Expect = 5e-95, Method: Composition-based stats. Identities = 107/701 (15%), Positives = 187/701 (26%), Gaps = 155/701 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------D 50 ID ET S D ++ +F F DH H Sbjct: 314 EFAIDLETTSLDP----------RDAEIVGLSFSFRDHQAWYIPVGHTSDAGLQPGQLPR 363 Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---S 107 ++ + L+ LE+ T + N F+ VL + + R T++ + Sbjct: 364 DLVLERLRPQLESPSPTKIGQNIKFDMQVLATN-GVSLSGIR-FDTMLASYVLNPSRQGH 421 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L A+ G +I+ K + Y D Sbjct: 422 GLDALALEH--------LGHRMISY----AEVTGSGKTQKNFSQVEIETASRYACEDADA 469 Query: 168 TREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 T + ++ PL E L + + + G +D+ L L++ Sbjct: 470 TWLLHRKFSPLLAENGVEELFHRIEMPLVPILAGMENHGVLLDIRLLADLSRDFSSRMAT 529 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT-----ETTCQRVLSSNKKLTPQ 272 L+ + L + ++L LF L T +T VLSS + Sbjct: 530 LEGRIFQLAGTT-FNLNSPKQLGEVLFERLQLKTGKKTKGKTGWSTDNEVLSSLAEEHEI 588 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 A + + R S+ + L ++ T + TGR S QN+P Sbjct: 589 ARLILDYR-GLSKLKSTYSDALPRLVHPRTGRVHTSYNQTVTSTGRLSSSDPNLQNIPIR 647 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 S +R IA G ++ AD + IE RVLA + Sbjct: 648 SDEGR-------------------------MIRHAFIAPPGHVIISADYSQIELRVLAHL 682 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G+ +AFE ED++ T + F + P VT + R K + + Y G + Sbjct: 683 SGDPVFCQAFEHDEDIHTRTASEVFGLFPEMVTAEMRRQAKTINFGIIYGQG-----SFS 737 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 L + ++ E A F E +G Sbjct: 738 LARQLGIARKTAEEFISAYKERHAKAVGFLDDCIRQAEEQGFVTTILGR--RLPIADITS 795 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + G A K + + + + S + Sbjct: 796 TNGNIRAF---AQRNAINYPIQGSAADIIKSAMIRVDGRIRSEGLK--------SRLIMQ 844 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 V + + M E+ Sbjct: 845 VHDELVFEVREDEL-------------------------LAM----------------EL 863 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + E M+ +PLK + + Sbjct: 864 LVE-------------EEMSRAVE--LRIPLKVDISHGVNW 889 >gi|325924860|ref|ZP_08186294.1| DNA polymerase I [Xanthomonas perforans 91-118] gi|325544705|gb|EGD16054.1| DNA polymerase I [Xanthomonas perforans 91-118] Length = 933 Score = 353 bits (906), Expect = 5e-95, Method: Composition-based stats. Identities = 95/700 (13%), Positives = 177/700 (25%), Gaps = 159/700 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 D ET S L +I + + H Sbjct: 358 AFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHHFPGAPAQLDRTQAL 407 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 L L + V + + ++ V++ + + + TL+ + + + Sbjct: 408 AQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GVALAGYA-DDTLLESFVLNSGSARHDMDS 465 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + G + + E + P + + Y D +T + Sbjct: 466 LAKRY--------LGYDTVKY----EDVCGKGAKQIPFAQISLEDATRYAAEDADITLRL 513 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E L + I G CVD A + + Q Sbjct: 514 HRVLGPRLASEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQ 573 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF E L +T + L + + Sbjct: 574 KATELAG-RSFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 632 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L E ++ GR+ + GA+ TGR S QN+P + Sbjct: 633 LEYR-GLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 690 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G+KL+ D + IE R++A ++G+ Sbjct: 691 GRR-------------------------IRRAFVAPAGRKLIACDYSQIELRIMAHLSGD 725 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+G D++ T A F V+ D+R K + L Y A Sbjct: 726 PGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSA-----FGLAR 780 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE-RVKKAWRQKH 514 L + + +F ++ + + G A Sbjct: 781 QLGIGRGEAQDYIALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINA----- 835 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +A G A KR V + Sbjct: 836 -GSQGQRAGAERAAINAPMQGTAADIIKRAMVNVDGW----------------------- 871 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 R ++ +V Sbjct: 872 --------IANHAQRAKM---------------------ILQVHDE-----------LVF 891 Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E S + M +PL + + Sbjct: 892 EADIDFVDTLLSEVTTRMAGAAE--LRVPLMVDSGVGDNW 929 >gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582] gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582] Length = 933 Score = 353 bits (906), Expect = 5e-95, Method: Composition-based stats. Identities = 102/702 (14%), Positives = 201/702 (28%), Gaps = 156/702 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51 D ET LT +I +F + HD Sbjct: 354 DVFAFDTETDGLDTLT----------ANLIGLSFAIEPGVAAYLPVAHDYLDAPVQLDRA 403 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + + LK LE+ V N F++++L ++D+ + T++ + Sbjct: 404 YVLETLKPLLEDEKALKVGQNLKFDKSLLARY-DIDLRGIAY-DTMLESYVLDSVSGRHD 461 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + ++ + L + E ++ A Y D VT Sbjct: 462 MDSLSDRY------------LDHKTITFEEIAGKGKNQLTFNQIALEQAAPYAAEDADVT 509 Query: 169 REIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 ++ + P E L + I G +D + ++ + + Sbjct: 510 LQLHLAMWPKLKESTGQLKVFNEIEMPLLPVLSHIERTGVLIDQHILAAHSKELSKRLGE 569 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+ + L + ++L+ L+ + L + T +T + VL+ P Sbjct: 570 LEIQAHEL-AEEPFNLASTKQLQAILYEKQKLPVLKKTPGGAPSTNEEVLAELALDYPLP 628 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + R ++ + L +N GR+ + + TGR S QN+P Sbjct: 629 KVILEYR-GLAKLKTTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSSDPNLQNIPVR 686 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +R IA G ++V AD + IE R++A + Sbjct: 687 NDEGRR-------------------------IRQAFIAPAGYRIVAADYSQIELRIMAHL 721 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T F + +VT +QR K + L Y A Sbjct: 722 SQDRGLLNAFAAGKDIHRATAGEVFGLPLDKVTNEQRRSAKAINFGLIYGMSA-----FG 776 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 L + + E + + ++ E G R Sbjct: 777 LARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRQQASEQGYVSTLDGR--RLYLPDVRS 834 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + +A G A KR + + + + ++ + Sbjct: 835 SN-GMRR--KAAERAAINAPMQGTAADIIKRAMIAVDAWLQGQQQPLVRM---------- 881 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 I+Q +V VH Sbjct: 882 ----------------------------IMQ-------------VHDE---LVFEVH--- 894 Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + + LM + A +PLK + K + Sbjct: 895 -----ESAMDDACLRIRSLMEGSMELA--VPLKVDIGVGKNW 929 >gi|163744924|ref|ZP_02152284.1| DNA polymerase I [Oceanibulbus indolifex HEL-45] gi|161381742|gb|EDQ06151.1| DNA polymerase I [Oceanibulbus indolifex HEL-45] Length = 932 Score = 353 bits (906), Expect = 5e-95, Method: Composition-based stats. Identities = 97/711 (13%), Positives = 186/711 (26%), Gaps = 168/711 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50 + +D ET +LT ++ + + H Sbjct: 346 YVAVDTETTGLDELT----------AELVGVSLSVEPGQACYIPLTHKASRSDDLFGSDD 395 Query: 51 --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 Q+L LE+ + + N ++ + L I + T++++ + Sbjct: 396 LAPGQMPFEEALQLLTPMLEDPAILKIGQNMKYDGKIFAQ---LGITVAPIDDTMLMSYA 452 Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + + E L + + Sbjct: 453 MHAGLHGHGMDTLSERY------------LGHTPLPIKPLLGSGKSAVTFDKVPMEDAVP 500 Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D VT ++K +P + E+ L + + G VD ++ Sbjct: 501 YAAEDADVTLRLWKLFKPQLHRAEVTKVYETLERPLVPVLAQMERAGILVDRDTLSRMSN 560 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSS 265 + L+ ++ L + +L LF + GL +T VL Sbjct: 561 AFAQKMAGLEADIHELAG-ETFNVGSPAQLGEILFGKMGLDGGKKGKTGKYSTGADVLED 619 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 A +V + R S+ + L + +N++ T + + TGR + Sbjct: 620 LATEHDLARRVLDWRQ-LSKLKSTYTDALQDHVNANTGRVHTCYSIAGAATGRLASTDPN 678 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S +R +A EGK LV D + IE Sbjct: 679 LQNIPIRSEEGRR-------------------------IREAFVAPEGKVLVALDYSQIE 713 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A +AFE G+D++ T + F+V Q+T + R K + + Y Sbjct: 714 LRILAHIAQIDALKEAFERGDDIHAMTASEMFDVPMDQMTPEIRRNAKAINFGVIYGISG 773 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 L + + E + + + EH G Sbjct: 774 -----FGLARNLRIPRAEAQGFIDRYFERFPGIRTYMDDTKAFAKEHGFVQTLFGRKINT 828 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + + A I Sbjct: 829 ---------PNIGAKGPQAGFAARAAINAPI----------------------------- 850 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 T + R + D+ A+ ++ Sbjct: 851 --------------QGTAADVIRRAMIRMPEAI--------ADLPAKMLLQV-------- 880 Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 HDE++ E E + +M + P + L + + Sbjct: 881 ---HDELLFEVEKGAEDALIAAAREVMENANDPVVKLDVKLTVDAGVGANW 928 >gi|71082906|ref|YP_265625.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062] gi|71062019|gb|AAZ21022.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062] Length = 924 Score = 353 bits (906), Expect = 5e-95, Method: Composition-based stats. Identities = 102/700 (14%), Positives = 200/700 (28%), Gaps = 151/700 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQ 55 L ID ET S A ++ + H + + Sbjct: 345 ELAIDTETSSLD----------AHQTDLVGISLSTKIGQACYIPIGHKFKGCLKKETVIK 394 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112 LK LE+ V + N F+ VL I ++ T++++ + + Sbjct: 395 KLKPLLEDKSVKKIGQNIKFDFIVLYKQ---GINMNSMEDTMLMSYVLDAGKNRHNMDTL 451 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E K KE + EY D +T ++ Sbjct: 452 SEIH--LQHKTISFKE----------IVGTGKKEINFSDVELDKAMEYAAEDADITYRLY 499 Query: 173 KRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 K E+ L + + G +D L++ + + +KL++E+ Sbjct: 500 KIFSKNLKLEKLTNIYEIFEKPLIKILAFMEIEGIKIDNKFLKVLSEKFEKKISKLEKEV 559 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 ++ + ++L ++ + + + T T VL + ++ Sbjct: 560 FKISK-KEFNIASPKQLGEIIYNDLKIAVLKKTRKGSFATNASVLEDLAFKGHEFPKLIL 618 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + + S+ + L E +N + + T L A+ TGR + QN+P S ++ Sbjct: 619 DWRQVSKLKNTYSDALPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIPIKSEDGKD 678 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA +G L+ AD IE R+LA +A + Sbjct: 679 -------------------------IRKAFIAEKGFTLISADYNQIEMRILADLAEVKEL 713 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 KAF ED++ T ++ FNV +V +D R K + + Y + +N Sbjct: 714 KKAFSNNEDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGIS-----QYGLAKQIN 768 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++ N+ ++ + + + + + G K+ V Sbjct: 769 VSNHEADEFLNAYFLKFPEIKIYMDNTIKFCRKSGYVTNIFGR--RSHFNGINDKNFNVR 826 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 +A G A R Sbjct: 827 NFQ---ERAAINAPIQGSASEIM-----------------------------------RL 848 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 + ++ K+ ++ DE++ E P Sbjct: 849 AMIRLNKKFESIKNNKSKI----------------LLQIH-----------DELIFEVPV 881 Query: 639 TDEFNA-SMLYHLMTSNPSWAK---GLPLKAEGYESKRYR 674 + N ++ MTS PL + + Sbjct: 882 KEVKNITEIIKDEMTSVTESDLHTFSTPLTVDVNTGDNWG 921 >gi|323703153|ref|ZP_08114807.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574] gi|323531930|gb|EGB21815.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574] Length = 882 Score = 353 bits (906), Expect = 5e-95, Method: Composition-based stats. Identities = 92/670 (13%), Positives = 185/670 (27%), Gaps = 147/670 (21%) Query: 21 ICKYAEDVCVILFA---FGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYF 75 + Y E + + + L P VL+ EN+++ H++ Sbjct: 337 VALYLEGTRHDGISRIFVAVPEQDIYLLPLQDTDPYPALTVLQALCENSEIKKYFHDAK- 395 Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135 + +++ T+V A ++ + I Sbjct: 396 SALWMLHHHGIELKSLA-FDTMVAAYLLNPTAS--------GYDLIDLALEHLGIVLPVN 446 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195 GE + D ++ E L + + Sbjct: 447 GEVSLAAKADAILKLAGELVKKLHLQEED-----RLYF------EVELPLVQVLADMEMA 495 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G VD ++ + L + +L + ++L LF + L + T Sbjct: 496 GVTVDKQGLKEMSAELHDMIESLAHRIHTLAG-EDFNINSPKQLGHILFEKLKLPVYKKT 554 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFL 311 + +T VL + + R ++ + L ++ GRL T Sbjct: 555 KTGYSTDAEVLEKLAEEHEIVALILEYRQ-LAKLKSTYTDGLAALVDPQTGRLHSTFHQ- 612 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 + TGR S QN+P S +R + Sbjct: 613 TVTATGRLSSAEPNLQNIPIRLESGRR-------------------------IRKVFVPR 647 Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 +G ++ AD + IE RVLA M+ + L+AF G+D++ T A F V +VT D R+ Sbjct: 648 QKGNLILTADYSQIELRVLAHMSQDPSFLEAFRQGQDIHTRTAAEVFGVPMEEVTPDMRS 707 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + Y L ++ ++ +++ + + Sbjct: 708 RAKAVNFGIVYGIS-----DFGLARDLKVSRREAKSYIDNYFARCPGVKDYIDRVIKEAK 762 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 +RR +P ++ Sbjct: 763 HTGYVTTL-----------------------------------------LNRRRYLPDLF 781 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 R+ +NT +Q + DI+ Sbjct: 782 SPNYNARSF---------------GERAAMNTP------------------IQGSAADII 808 Query: 611 AEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPL 663 M+ + +VL VHDE++ + P+++ ++ M + +PL Sbjct: 809 KLAMVRVARELRERNLQAKLVLQVHDELIFDVPESEVNELVDLVRDCMENALP--LDVPL 866 Query: 664 KAEGYESKRY 673 + + Sbjct: 867 VVDVKLGPNW 876 >gi|325143690|gb|EGC66009.1| DNA polymerase I [Neisseria meningitidis M01-240013] Length = 983 Score = 353 bits (906), Expect = 6e-95, Method: Composition-based stats. Identities = 112/700 (16%), Positives = 203/700 (29%), Gaps = 147/700 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52 + ID ET S A + ++ + F H Sbjct: 398 KIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 447 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110 + LK LEN + + N +++ V + + ++ + L Sbjct: 448 VLGHLKPYLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 505 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + E G E I E+ + A EY D Sbjct: 506 ELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFALR 553 Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L E + + + G +D A + + E KL+QE Sbjct: 554 LEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQE 613 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAIQ 275 + + ++L+ LF + G+ + L + +T + VL P Sbjct: 614 AYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKI 672 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 673 ILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRTE 730 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 + VR A +G +V AD + IE R++A ++G Sbjct: 731 EGRK-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLSG 765 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ + AF+ GED++ T A F AP V+ +QR K + L Y G + Sbjct: 766 DKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLA 820 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L ++ + + + + + + +E + G R K+ Sbjct: 821 KSLGIDNLSAKNFIDRYFDRYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNKN 878 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + +A G A KR + + + L Sbjct: 879 ANARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKL------ 929 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 I+Q +VL E+V Sbjct: 930 --------------------------IMQ-------------VHDE---LVL----EVV- 942 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +T+ L +M +PL AE + + Sbjct: 943 ---ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 979 >gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM 18228] gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM 18228] Length = 932 Score = 353 bits (906), Expect = 6e-95, Method: Composition-based stats. Identities = 94/694 (13%), Positives = 200/694 (28%), Gaps = 149/694 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLK 58 L +D ET S + ++ +F + ++ D + + Sbjct: 361 VLSLDTETTSTDPIR----------AELVGMSFSYAENQAFYVPVPADRSEAQKIVDRFR 410 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 EN ++ V N ++ VL + + T+V + + E Sbjct: 411 PVFENREIMKVGQNIKYDMLVLANY-GVQLQ-GPLFDTMVAHYVLQPELRHNMDYLAEIY 468 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + +ELI EY D VT ++ +LE Sbjct: 469 --LNYQTIHIEELIG---------PKGKNQGNMRDLPPASVYEYACEDADVTLKLKNKLE 517 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + + G +D ++ + ++++E+ L Sbjct: 518 KELDENNVRKLFEEIEMPLIPVLAYMERNGVRIDTEALKETSRHFTLRMKQIEEEVYQLA 577 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF + T+T T + VL S + ++ +R Sbjct: 578 GT-EFNIASPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRGKHEVVGKILEHR- 635 Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N + GR+ + + TGR S QN+P + +E Sbjct: 636 GLKKLLGTYIDALPQLINPETGRIHTSFNQ-TVTATGRLSSSNPNLQNIPIRNEDGKE-- 692 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I +G AD + IE R++A ++G+ ++ Sbjct: 693 -----------------------IRKAFIPDDGCIFFSADYSQIELRIMAHLSGDPHMIE 729 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ G+D++ T ++ + V +VT++QR+ K + Y LN++ Sbjct: 730 AFQKGQDIHAATASKIYKVPLEEVTREQRSKAKTANFGIIYGISV-----FGLAERLNVD 784 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + E + + + E + +R +++ V Sbjct: 785 RKEAKELIDGYFENYPHVKEYMDESIRIARERGYIETIFKR--KRYLPDINSRNAVVRGY 842 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + G A K V Sbjct: 843 ---AERNAINAPIQGSAADIIKVAMV---------------------------------- 865 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 Y L E +Q+ + ++ + + Sbjct: 866 ----------RIYQRFLKER-IQS-------KMILQVHDE-----------LNFSVLPEE 896 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M S + PL A+ + + Sbjct: 897 QEKVKQIVIEEMESA--YKMKAPLLADSGWGQNW 928 >gi|319638957|ref|ZP_07993715.1| DNA polymerase I [Neisseria mucosa C102] gi|317399861|gb|EFV80524.1| DNA polymerase I [Neisseria mucosa C102] Length = 930 Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats. Identities = 116/702 (16%), Positives = 206/702 (29%), Gaps = 157/702 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 352 DTIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP--SA 108 + LK LEN + + N +++ V DI ++ +++ + Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY---DIALNGIAGDSMLASYIIESHLGHG 458 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 L + E G E I E+ + A EY D Sbjct: 459 LDELSERW--------LGLETITY----ESLCGKGAKQISFADVAIGQATEYAAQDADFA 506 Query: 169 REIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + L E + + + G +D A + + E KL+ Sbjct: 507 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQA 273 QE + + ++L+ L + G+ + L + +T + VL P Sbjct: 567 QEAYAAAGQP-FNLNSPKQLQEILVDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + NR ++ + L E ++ DGR+ T A TGR + QN+P Sbjct: 626 KIILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIR 683 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + VR A +G +V AD + IE R++A + Sbjct: 684 TAEGRR-------------------------VRRAFTAPQGSIIVSADYSQIELRIMAHL 718 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G + Sbjct: 719 SGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYG 773 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 L ++ + + + + + +E + G R Sbjct: 774 LAKSLGIDNISAKNFIDRYFARYPGIAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRN 831 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 K++ +A G A KR + + R L Y D Sbjct: 832 KNANARA---GAERAAINAPMQGTASDLIKRAMIDVS----------------RWLSY-D 871 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + + I+Q +VL Sbjct: 872 LKSKL-----------------------IMQ-------------VHDE---LVL------ 886 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P+ + L +M +PL AE + Sbjct: 887 --EVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 926 >gi|308390081|gb|ADO32401.1| DNA polymerase I [Neisseria meningitidis alpha710] gi|325135575|gb|EGC58193.1| DNA polymerase I [Neisseria meningitidis M0579] gi|325201379|gb|ADY96833.1| DNA polymerase I [Neisseria meningitidis M01-240149] gi|325207360|gb|ADZ02812.1| DNA polymerase I [Neisseria meningitidis NZ-05/33] Length = 929 Score = 353 bits (905), Expect = 7e-95, Method: Composition-based stats. Identities = 113/701 (16%), Positives = 206/701 (29%), Gaps = 155/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 351 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAIYIPVGHSLTAAPEQIDLQ 400 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V + + ++ + L Sbjct: 401 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 458 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 459 DELSERW--------LGLETITY----ESLCGKGAKQISFADVAIGQATEYAAQDADFAL 506 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 507 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELSRQSAELGAELMKLEQ 566 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E ++ + ++L+ LF + G+ + L + +T + VL P Sbjct: 567 EAYAVAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 625 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 626 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 683 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 VR A +G +V AD + IE R++A ++ Sbjct: 684 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 718 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G + Sbjct: 719 GDKTLITAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 773 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + +E + G R K Sbjct: 774 AKSLGIDNISAKTFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRNK 831 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + R+ + + Sbjct: 832 NANARA---GAERAAINAPMQGTASDLIKRAMIDV-----------------RNCLSDGI 871 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 G+ M +VL E+V Sbjct: 872 GS-----------------------------------KLVM-QVHDE---LVL----EVV 888 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +T+ L +M +PL AE + + Sbjct: 889 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 925 >gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946] gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946] Length = 885 Score = 353 bits (905), Expect = 7e-95, Method: Composition-based stats. Identities = 105/703 (14%), Positives = 207/703 (29%), Gaps = 175/703 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + D ET + Y + ++ F+F ++H H Sbjct: 323 VAFDTET--------NALDAY--NAKIVGFSFALNEHEAYYVPLAHHYLGVGEQIGMEEA 372 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111 + LK+ IV N ++ V++ F L + + T+++A S L Sbjct: 373 KEALKKLF---KHKIVGQNLKYDLAVIENNFGLRLS-SSYADTMLMAWLLNPESNVGLDT 428 Query: 112 VGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + + K ++ + +N+ EY D +T + Sbjct: 429 LAKRFFNHDMVKFKD----------------VVSKNENFSHVPLDKACEYASEDAWMTLK 472 Query: 171 IFKRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ +L + + G +D A L + D L E Sbjct: 473 LYNKLHDMLEPRLLEIAKEVEFPFILTLMRMEKEGIKIDGAYFEALLKRTDGAIDALKHE 532 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278 + +L + ++L T LF + GL T+ +T + VL+ P ++ Sbjct: 533 IFTLCDAQ-FNLNSTQQLGTVLFEQLGLPPVKKTKTGYSTDENVLNELLDKHPSIAKILE 591 Query: 279 NRMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R + + L++ + GR+ + G + TGR S QN+P + Sbjct: 592 YR-ELYKLRSTYIEPLLKLSKESPLGRVHTSFIQTG-TSTGRLSSKDPNLQNIPVKTALG 649 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 E VR +A EG L+ D + IE R+LA + ++ Sbjct: 650 RE-------------------------VRGGFVAKEGCVLIGIDYSQIELRLLAHFSNDE 684 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +KAF G+D++ T + F Q +R++ K + L Y G Sbjct: 685 AMVKAFRDGKDIHYETALKLFG---EQEAASKRSVAKSINFGLLYGMGP----------- 730 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + +R +++ Sbjct: 731 ---------------------------------KRLSETLGISMAEAKRYIESYFATFPT 757 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + E+ + + T + GR + N Sbjct: 758 IKAYVMEVAEQAKTT--------------------------GYVETLLGRKRFFDFEHAN 791 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHDEI 632 Y + + Q + D++ M ++L +HDE+ Sbjct: 792 AMQY----------AGYLREAVNTVFQGSAADLIKLSMNKIMATLIHDEAKLLLQIHDEL 841 Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 + E ++ + + +M +A +PLK K + Sbjct: 842 IFEVVESQAQSFALEAQKVMEEI--YALRIPLKVSIAMGKNWG 882 >gi|88809001|ref|ZP_01124510.1| DNA polymerase I [Synechococcus sp. WH 7805] gi|88786943|gb|EAR18101.1| DNA polymerase I [Synechococcus sp. WH 7805] Length = 988 Score = 353 bits (905), Expect = 7e-95, Method: Composition-based stats. Identities = 104/710 (14%), Positives = 204/710 (28%), Gaps = 155/710 (21%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD---------PV 52 + +D ET ++ + + H V Sbjct: 392 VAVDTETTDLNPFK----------AQLVGIGVCWGPWLSDLAYIPVGHQAPEGSQLPLEV 441 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110 + + L L + N+ ++R + + + TL+ +L Sbjct: 442 VLEQLAPWLSSPKHPKALQNAKYDRL--ILLRHGLLLGGVVMDTLLADYLRDAAAKHSLD 499 Query: 111 AVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E ++ + + + YC DV +TR Sbjct: 500 VMAERDYGITPTVFSDL-----------VGKPKDGKASCFAEVPIDQAALYCAMDVHLTR 548 Query: 170 EIFKRLEPLSSK------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 ++ L E L + + G +D+ TL++ + T+ Sbjct: 549 KLALDLREQLQTSGQQLTNLLDRVELPLEPVLALMEATGIRIDLTYLDTLSKEMGETLTR 608 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLTPQ 272 L+ + + ++L LF GL + +T VL P Sbjct: 609 LEANAKQAAGVD-FNLASPKQLGELLFETLGLDRKKSRRTKTGYSTDATVLDKLADDHPV 667 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 V +R+ S+ ++ L + + GR+ + TGR S QN+P Sbjct: 668 VPLVLEHRV-LSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQNIPI 725 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + S +R + E L+ AD + IE R+L Sbjct: 726 RTE-------------------------YSRRIRKAFLPQEHWTLLSADYSQIELRILTH 760 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++GE+ +A+ G+D++ T + ++T D+R +GK + + Y GA Q+ Sbjct: 761 LSGEEVLQQAYRDGDDVHALTARLL--LDKDEITADERRLGKTINFGVIYGMGA---QRF 815 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A TG++ + E + F + + +G Sbjct: 816 ARETGVS--QAEAKEFLSKYRERYPKVFAFLELQERLALSRGYVETILG----------- 862 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 R P + + L+ P Sbjct: 863 --------------------------------RRRPFHFDRNGLGRLLGKDPF------- 883 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIV 625 ++ + + Q R +Q S DI+ M+ ++ Sbjct: 884 EIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKLAMIQLQAALQQQSLPARLL 937 Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 L VHDE+V E + + ++ M + +PL AE + Sbjct: 938 LQVHDELVLEVEPSALEDVKALVVSTMETAVE--LSVPLVAETGSGSNWM 985 >gi|38146967|gb|AAR11868.1| DNA polymerase I [Caldibacillus cellulovorans] Length = 903 Score = 352 bits (904), Expect = 9e-95, Method: Composition-based stats. Identities = 101/677 (14%), Positives = 175/677 (25%), Gaps = 158/677 (23%) Query: 26 EDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERT---VLK 81 D V A+ +D H + L + L + H + V Sbjct: 353 HDGEVRGVAW-WDGHTAYFIPFERLVQSDMRPLADWLADARRPKRTH----DSHRAEVAL 407 Query: 82 ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGET 138 L CT + A L + L E Sbjct: 408 FWHGLAFRGTS-FCTHIAAYLLDPTESRHTLADLSRRYGLPPVPEAE------------D 454 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYL 188 + Y + + LE E L Sbjct: 455 VYGKGAK---FKVPDRDTLARYVGRKAALVARLVPLLEADLAACGMRSLFYDLELPLSSE 511 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G VD A + + K+++E+ L + ++L LF + G Sbjct: 512 LAVMETVGVRVDAAALAAYGEELREAAAKVEREIYELAGTT-FNIGSTKQLGEILFDKLG 570 Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+ +T VL P ++ + R ++ + L++ + Sbjct: 571 LPVVKKTKTGYSTDADVLEELAPYHPIVEKILHYRQ-LTKLQSTYIEGLLKEIRPQTGKI 629 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 T + TGR S QN+P + +R Sbjct: 630 HTYYQQTIAATGRLSSQFPNLQNIPIRLEEGRK-------------------------IR 664 Query: 366 SCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 + G ++ AD + IE RVLA ++G++ +AF TG D++ T F V+ +V Sbjct: 665 KAFVPSEPGWLMLAADYSQIELRVLAHVSGDERLKEAFRTGMDIHTKTAMDVFGVSEDRV 724 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 R K + G++ A Sbjct: 725 DARMRRQAKAVNF--------------GIIYGISDFGLAQ-------------------- 750 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + S V + EQ +G Sbjct: 751 ----------NLNISRKEAAEFIRQYFAVFSGVKAYR---ERIVEQARRDGYVTTLL--- 794 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 GR D+ + R +Q Sbjct: 795 --------------------GRRRYLPDINASN---YNLRSFAERTAMNTP------IQG 825 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657 + DI+ M+ T+ ++L VHDE+V E P + L +M S Sbjct: 826 TAADIIKTAMVRLTRRMRDVGLKSRMLLQVHDELVFEVPPDELDAMRELVTDVMESAVP- 884 Query: 658 AKGLPLKAE-GYESKRY 673 +PLK + + + Y Sbjct: 885 -LDVPLKVDVSWGADWY 900 >gi|291572090|dbj|BAI94362.1| DNA polymerase I [Arthrospira platensis NIES-39] Length = 959 Score = 352 bits (904), Expect = 9e-95, Method: Composition-based stats. Identities = 108/704 (15%), Positives = 207/704 (29%), Gaps = 160/704 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD-------PV 52 + D ET S D ++ + + H Sbjct: 382 KPVAWDTETTSLEP----------RDANLVGIGCCWGSELSDLAYIPLNHTQGEMLNIEQ 431 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALK 110 + + L+ LE+ + N+ F+R +L + + T++ + L Sbjct: 432 VLEALRPILESEEYPKTLQNAKFDRLIL-RSQGITLK-GVVFDTMLASYIINPESSHNLT 489 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + L +++ L + K YC DV T + Sbjct: 490 DLSLRY------------LPDLGIVAQSYSQLVPKGKTIADLDINTVANYCGLDVFTTFQ 537 Query: 171 IFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 I ++++ + EQ L + + +G +D + L+Q + L+ Sbjct: 538 ITQKMQDILKDLPRLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSQQLGETLDNLE 597 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAI 274 + V + ++L LF L + T+ +T VL K P Sbjct: 598 KTSHQAAG-EVFNLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKHDHPVIN 656 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + R S+ ++ L E + SD GR+ + TGR S QN+P + Sbjct: 657 SILEYR-TLSKLKSTYVDALPELVRSDTGRIHTDFNQAI-TSTGRLSSSHPNLQNIPIRT 714 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 S +R I G LV AD + IE R+LA ++ Sbjct: 715 E-------------------------FSRQIRKAFIPESGWLLVSADYSQIELRILAHLS 749 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 E+ ++A+ T +D++ T F +T ++R +GK++ + Y GA+ F Sbjct: 750 QEKVLIEAYNTNQDVHSLTAKLLF--DRDGITPEERRLGKIINFGVIYGMGAQRF----- 802 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + ++ A + ++ + + + Sbjct: 803 AREVGVSATAGKQFIDRFNSQYPGVFEYLESQKLAAINQGYVETI--------------- 847 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 +RR + + L Y+D Sbjct: 848 --------------------------LGRRRYFEGLKGRDRD-----------RLNYQDE 870 Query: 574 GNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 R+ N KL +IL ++L VHDE Sbjct: 871 QMLRAAANAPIQGSSADIIKIAMIKL---------AEILK-------NYQARLLLQVHDE 914 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 +V E P ++ + M + +PL + + + Sbjct: 915 LVFEVPLSEWEELEYQIKSTMENC--LFLSVPLVVDIHAGTNWM 956 >gi|218767443|ref|YP_002341955.1| DNA polymerase I [Neisseria meningitidis Z2491] gi|121051451|emb|CAM07744.1| DNA polymerase I [Neisseria meningitidis Z2491] Length = 938 Score = 352 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 113/701 (16%), Positives = 203/701 (28%), Gaps = 147/701 (20%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V + + ++ + L Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 460 DELSERW--------LGLETITY----ESLCGKGAKQISFADVAIGQATEYAAQDADFAL 507 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 508 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL P Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 684 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 VR A +G +V AD + IE R++A ++ Sbjct: 685 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 719 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G + Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 774 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + +E + G R K Sbjct: 775 AKSLGIDNISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRNK 832 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + + L Sbjct: 833 NTNARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKL----- 884 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 I+Q +VL E+V Sbjct: 885 ---------------------------IMQ-------------VHDE---LVL----EVV 897 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +T+ L +M +PL AE + + Sbjct: 898 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 934 >gi|224532146|ref|ZP_03672778.1| DNA polymerase I [Borrelia valaisiana VS116] gi|224511611|gb|EEF82017.1| DNA polymerase I [Borrelia valaisiana VS116] Length = 907 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 101/700 (14%), Positives = 201/700 (28%), Gaps = 162/700 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LK 58 + ID ET S T +I + F + + + Sbjct: 340 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKVYIEKHYII 389 Query: 59 EALEN--TDVTIV-AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVG 113 + N + N F+ +LK IP + T++ A +L + Sbjct: 390 QKFNNLFKSKPKIIGQNYKFDYKILKNNGFDPIPP--YFDTMIAAYLIDTNSKVSLDFLA 447 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 E K K + +++I +N + + Y D +T +F Sbjct: 448 E--KYLMHKNIKYEDVIQ-------------KNDNFAHISLEMATSYSSEDADITFRLFN 492 Query: 174 RLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 E + + + G +D + + E ++ E+ Sbjct: 493 VFNEKLKEDGLDKLMYEIEMPFNRVIIEMEENGIYLDKEYLKEYGKELGKELELIENEII 552 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF L L D + +T +VL S K + +R Sbjct: 553 KSIGID-FNLNSPKQMHEVLFERLNLKLPDRMKKDSTDIKVLESLKGQHESIENLIKHRQ 611 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ + L E +N T + TGR + QN+P + Sbjct: 612 -IAKLKSTYTDNLTELINYKTNRLHTNFIQTKTATGRITSINPNLQNIPIKEEKGRK--- 667 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R G + AD + IE +LA ++ ++ +KA Sbjct: 668 ----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 705 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE +D++ T ++ F + ++T + R I K + ++ Sbjct: 706 FENNKDIHAETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDFR 751 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 A E + ++ + ++ E Sbjct: 752 L------------------------------AKELGITKEEAKGFINSYFDSYPKIKEFI 781 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 T S R +++ +N Sbjct: 782 TNQINFVRNT--------------------------GYSETISKRRRYIKEINSNNYLER 815 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635 + R +I+Q + DI+ M+ K I+L VHDE++ E Sbjct: 816 SA---AERIAI------NSIIQGSAADIMKIAMIKVFNEFKSKKMKSKILLQVHDEMLIE 866 Query: 636 TP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 +P + + +L ++M + + LPL+A K + Sbjct: 867 SPIEEENETKKILKNMMETA--YTLSLPLRANIETGKSWG 904 >gi|298369714|ref|ZP_06981031.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314] gi|298282271|gb|EFI23759.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314] Length = 929 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 114/701 (16%), Positives = 204/701 (29%), Gaps = 154/701 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 + ID ET S A + ++ + F H Sbjct: 350 DKIGIDTETTSLD----------AMNAALVGISIAFQAGKAVYIPVGHSLTAAPEQLDLQ 399 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V + + ++ + L Sbjct: 400 YVLGYLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 457 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 458 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 505 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 506 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 565 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL P Sbjct: 566 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 624 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 625 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 682 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 VR A +G +V AD + IE R++A ++ Sbjct: 683 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 717 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G + Sbjct: 718 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 772 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + +E + G R K Sbjct: 773 AKSLGIDNLSAKTFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRNK 830 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + R LV D+ Sbjct: 831 NANARA---GAERAAINAPMQGTASDLIKRAMIDVS----------------RWLVSDDL 871 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + I+Q +VL Sbjct: 872 KSKL-----------------------IMQ-------------VHDE---LVL------- 885 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P+ + + L +M +PL AE + Sbjct: 886 -EVPEAELDSVKEKLPQIMAKVDDGMLKVPLVAEVGVGMNW 925 >gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1] gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1] Length = 920 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 101/703 (14%), Positives = 205/703 (29%), Gaps = 165/703 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----- 56 + IDFET +I +F + D + + Sbjct: 350 KLVCIDFETTGLDTFKDT----------IIGISFAIKSNEAFYLDLSGRTKIDKDKCMNL 399 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG 113 + + LE D+ ++ HN +E ++ I + + T+V A + + Sbjct: 400 VFDTLEKEDIKVIGHNLKYEYKMM-RAIGKSI-GNMYFDTMVAAYLINPTRGRYNMDDLA 457 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A L K + + + EY D VT ++ Sbjct: 458 IAY------------LSYNTIKYADLTDNAKKTLLDAP--LKDVVEYACEDADVTFRFYE 503 Query: 174 RLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 PL L + + G + L+ K +++ Sbjct: 504 CFAPLLKTHNLEDLFFNIEMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIY 563 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280 + + ++L+ LF + G+ T+ +T + VL+ + A + R Sbjct: 564 KEAG-EEFNLQSPKQLEYILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYR 622 Query: 281 MRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L+ +N GR+ + + TGR S QN+P E Sbjct: 623 -KYAKLKNTYLDVFPTLINEKTGRIHASFNQ-TVTATGRLSSSEPNLQNIPVRGEEGRE- 679 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R+ I +G L+ AD + IE R+LA + + + Sbjct: 680 ------------------------IRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPTLV 715 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ +D++ T + ++V+ VT R I K++ Sbjct: 716 EAFKNNDDIHRKTAMKIYSVSKEHVTASMRNIAKIIN----------------------- 752 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 F + + E E K + +SRV Sbjct: 753 ---------------------FSIIYGKTAFGLSKELGIKRKEAEDFIKGYFSTYSRVKP 791 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRS 578 E+ + + GR + ++ + Sbjct: 792 FCEEVVEEVRN--------------------------KGFVRTMCGRIRDLSKTINSSNA 825 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632 + R ++Q + D++ M+ K IV+ VHDE+ Sbjct: 826 M---ARNEAERMA------LNTLIQGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDEL 876 Query: 633 VCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674 V E + + A + +M + +P+ + ++ + Sbjct: 877 VVEVSEAEADKAMTIMKEIMEHSVK--ANVPIIVDIHKGNSWG 917 >gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem] gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem] Length = 892 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 110/699 (15%), Positives = 191/699 (27%), Gaps = 157/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQVLK- 58 ID ET S + V+ +A H H +P+ L Sbjct: 317 AIDLETTSLNP----------REARVVGYAVSCRPHEARYIPVGHRYLGAPEQLPEALVL 366 Query: 59 ----EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 L++ + N ++ VL ++ W T++ A L A Sbjct: 367 EILGPLLKDPARRKIGQNLKYDYQVL-RMAGFEMEGI-WCDTMLAAYLVNPARNSQGLDA 424 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + +I+ G Y D T + Sbjct: 425 LALEY--------LDHRMISY----AEVAGSGKCELNFSEVDLDRAGPYSCEDADATYLL 472 Query: 172 FKRLEPL----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P E L + + G +DV L L+ + +L+ + Sbjct: 473 HEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELSAGFGKQLIELEAQ 532 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQV 276 + G + ++L LF GL + T+ +T L + A + Sbjct: 533 IHEHCGGP-FNINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEVARLL 591 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R S+ + L + ++ GR+ + + TGR S QN+P Sbjct: 592 LQYR-SISKLKSTYTDALPKLVDPATGRVHTSYNQAV-TSTGRLSSSDPNLQNIPIRGEE 649 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA G ++ AD + IE RVLA ++G+ Sbjct: 650 GRG-------------------------IRRAFIAEPGSLMLSADYSQIELRVLAHLSGD 684 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + +AF GED++ T + F + P VT + R KV+ + Y GA + Sbjct: 685 RVLCEAFAAGEDIHRRTASEVFGMFPELVTSEMRRQAKVINFGVIYGQGA-----FSLAK 739 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + +S E A +F +G R Sbjct: 740 ELGVTPKQAKAFIDSYFERHSGARSFLDSCIREAEVCGFVTTIMGR---------RLCIP 790 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + +NG +R V Y G+ Sbjct: 791 EI-------------ASKNGNVRAFAQRNAVN----------------------YPIQGS 815 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 + ++ R + I+Q +V E Sbjct: 816 AADIIKAAMLRVIRRMQQERVASRLIMQ-------------VHDE-----------LVFE 851 Query: 636 TPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L M +PLK + + Sbjct: 852 VPEAERDLMEELVRTEMEGALP--LSVPLKVDLNFGLNW 888 >gi|161869227|ref|YP_001598393.1| DNA polymerase I [Neisseria meningitidis 053442] gi|161594780|gb|ABX72440.1| DNA polymerase I [Neisseria meningitidis 053442] Length = 930 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 113/702 (16%), Positives = 202/702 (28%), Gaps = 157/702 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP--SA 108 + LK LEN + + N +++ V DI ++ ++ + Sbjct: 402 DVLGRLKPHLENPTLKKIGQNLKYDQHVFANY---DIALNGIAGDAMLASYIIESHLGHG 458 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 L + E G E I E+ + A EY D Sbjct: 459 LDELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFA 506 Query: 169 REIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + L E + + + G +D A + + E KL+ Sbjct: 507 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQA 273 Q+ + + ++L+ LF + G+ + L + +T + VL P Sbjct: 567 QQAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + NR ++ + L E ++ DGR+ T A TGR + QN+P Sbjct: 626 KIILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIR 683 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + VR A +G +V AD + IE R++A + Sbjct: 684 TAEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHL 718 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G + Sbjct: 719 SGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYG 773 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 L ++ + + + + + +E + G R Sbjct: 774 LAKSLGIDNISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRN 831 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 K++ +A G A KR + + D Sbjct: 832 KNANARA---GAERAAINAPMQGTASDLIKRAMIDVRNWLSDGI---------------- 872 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 M +VL E+ Sbjct: 873 -------------------------------GS-----KLVM-QVHDE---LVL----EV 888 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 V +T+ L +M +PL AE + + Sbjct: 889 V----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926 >gi|283781545|ref|YP_003372300.1| DNA polymerase I [Pirellula staleyi DSM 6068] gi|283439998|gb|ADB18440.1| DNA polymerase I [Pirellula staleyi DSM 6068] Length = 966 Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 109/700 (15%), Positives = 206/700 (29%), Gaps = 154/700 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------M 53 L ID ET S ++ ++F + D + Sbjct: 383 LVIDTETTSVQP----------RWAEIVGYSFCYRDGEAWYLPIRAPENEQALCLDATAV 432 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALK 110 + + LE+ + V N ++ VL +++ T+V L Sbjct: 433 ADLFRPVLEDPAIAKVGQNIKYDMVVL-RSAGIELRGAA-FDTMVADYLIDPGERSHNLD 490 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + + E + LI + + +Y D V Sbjct: 491 ELARRH--LGHQNIEIESLI----------GTGKKQIRMDQVPLAAITDYAAEDALVPYR 538 Query: 171 IFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + LEP ++ L + + RG VD A L+ + T L+ Sbjct: 539 LLPILEPRLEQDGLVPLFRDLEMPLVEVLAELEHRGIKVDRARLVELSTDFSTKITALEN 598 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277 E+ ++ + +L LF + L + T+ + VL +L +V Sbjct: 599 EIYAI-NHGEFNIDSRLQLAKLLFEDLKLPILKKTKTGPSMDAEVLEDLARLHELPKKVL 657 Query: 278 NNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ +++L E ++ GR+ +L+ A+ TGR S QN+P + Sbjct: 658 EYRH-LAKLRSTYVDSLQELIHPVTGRVHTSLKQDVAA-TGRLSSQDPNLQNIPVRTAEG 715 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395 +RS EG KL+ AD + IE RVLA +G+ Sbjct: 716 RA-------------------------IRSAFQPGIEGWKLMAADYSQIELRVLAHFSGD 750 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF + D++ ++ + VAP VT + R K + + Y Sbjct: 751 AALAEAFASDRDIHTQVASQVYEVAPGDVTPEMRRSAKAINFGVIYGQSP-----FGLAR 805 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + ++ ++ ++F R + Sbjct: 806 SLGIENDEAAAFISAYFAQYPGVDDFMRETLIGCRKQGYVTTI----------------- 848 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 A +RR V V N+ R + Sbjct: 849 ------------------------AGRRRPVTGVRDPHAVNDKRQRTLPER------IAI 878 Query: 576 NRSYLNTTTRQLTREYTY-GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 N + + R +L E +QA ++ DE++ Sbjct: 879 NTVIQGSAADIIKRAMITVHRRLKEEKLQA-------RMLLQIH-----------DELLF 920 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P ++ ++ M++ +PLK + + Sbjct: 921 EFPPEEQGQLRDLVVESMSTAEK--ISVPLKIDVKTGLNW 958 >gi|325127400|gb|EGC50333.1| DNA polymerase I [Neisseria meningitidis N1568] Length = 937 Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 112/701 (15%), Positives = 202/701 (28%), Gaps = 147/701 (20%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 351 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 400 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V + + ++ + L Sbjct: 401 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 458 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 459 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIEQATEYAAQDADFAL 506 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 507 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 566 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL P Sbjct: 567 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 625 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 626 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 683 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 VR A +G +V AD + IE R++A ++ Sbjct: 684 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 718 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G + Sbjct: 719 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 773 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + +E + G K Sbjct: 774 AKSLGIDNISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIHNK 831 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + + L Sbjct: 832 NANARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKL----- 883 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 I+Q +VL E+V Sbjct: 884 ---------------------------IMQ-------------VHDE---LVL----EVV 896 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +T+ L +M +PL AE + + Sbjct: 897 ----ETELDFVKEKLPQIMAKVGGGLLDVPLVAEVGVGENW 933 >gi|228470367|ref|ZP_04055270.1| DNA polymerase type I [Porphyromonas uenonis 60-3] gi|228307949|gb|EEK16832.1| DNA polymerase type I [Porphyromonas uenonis 60-3] Length = 948 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 109/700 (15%), Positives = 204/700 (29%), Gaps = 142/700 (20%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58 + D ET L ++ + D+ + LK Sbjct: 358 VVAFDTETDGLDALC----------AGIVGMSLCADEKQAYFIPLPESAEEATHILSPLK 407 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116 E +++ V VAHN+ F+ VL + T++ +L + Sbjct: 408 ELMQDERVLKVAHNAKFDLEVLTRYGLPEARP--LYDTMLAHYLIDADQGHSLDELA--- 462 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 L+ + +L +Y D VT +++ L Sbjct: 463 ----------GGLLRYDTIRYKDLSPLEIFALRTDVDPKLLCDYASEDAYVTLRLYQALH 512 Query: 177 PLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT- 226 E L Y+ + RG +D+ Q + +L++E++S + Sbjct: 513 KQLSPTEQRLLTEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLESVLRLEKEIQSYSS 572 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 GL +++ LF E + T+T T + L + L P + + R Sbjct: 573 RGLNLKVNSPKQIGELLFDELQIMEKPRKTKTGSYVTNEETLLPLRSLHPVVALILDYR- 631 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 A + ++ L + DG+L + + TGR S QN+P S L + Sbjct: 632 EARKLLNTYIDPLPKMCYPDGKLHTSYNQAV-TATGRLSSSNPNLQNIPIRSDLGRPLRR 690 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 P + + G L+ AD + +E RV+A ++ + + + Sbjct: 691 AFVADPYYTPRLSACAPVDHTHEK-----PIGAVLLSADYSQVELRVMAHLSQDPAMIHS 745 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F +G+D++ T A+ F VAP +VT R+ K + G+ Sbjct: 746 FLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGI--------------NYGITPYG 791 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + K + + + Sbjct: 792 LSQR------------------------------LNIPVGEAAELIKEYFATFTHIQAFM 821 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 NE + GR R++ R+ Sbjct: 822 NEAIALATE--------------------------RGYTETAFGRRRQLRNL---RTARG 852 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCE 635 R +Q + DI+ M+ + +VL VHDE+V Sbjct: 853 AQRGNAERNAINAP------IQGTAADIIKIAMIRVEEELTKQQLRSYLVLQVHDELVLN 906 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAK-GLPLKAEGYESKRY 673 + +++ M W + +PL E K + Sbjct: 907 VYLDELERVTALVREAMECA--WPECSVPLVVEIGTGKDW 944 >gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 952 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 99/727 (13%), Positives = 196/727 (26%), Gaps = 186/727 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53 + +D ET S A ++ +F ++ H Sbjct: 353 RLIAVDTETDSLD----------AMSANLVGISFALENGEACYIPLGHKQKAQPQQADMF 402 Query: 54 ------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 LK L N ++ + N ++ T+ +++ Sbjct: 403 GDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQ 461 Query: 90 IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 T++ + + + + G + I E Sbjct: 462 GVA-FDTMIESYTQNSTGRHNMDDLAARY--------LGHKTIPF----EELAGKGKNQL 508 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY-----------LDQTINDRG 196 + EY D VT ++ + L +E EL + I G Sbjct: 509 TFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGVLSRIERNG 568 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 +D T + ++ +++ + + + ++L+ LF + GL + T Sbjct: 569 VLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQT-FNLASTKQLQEILFEKLGLPVLKKTP 627 Query: 257 ----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFL 311 +T + VL + ++ S+ + L + +N GR+ + Sbjct: 628 KGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRVHTSYNQA 687 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 + TGR S QN+P + +R +A Sbjct: 688 V-TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAFVAR 721 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 EG K+V AD + IE R++A ++ ++ + AF G+D++ T A F V +VT +QR Sbjct: 722 EGYKIVAADYSQIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRS 781 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + L Y + L + + + + + F ++E E Sbjct: 782 AKAINFGLIYGMS-----SFGLSNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVE 836 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSE----LWNELHQAFEQTIENGKAIIARKRRDVP 547 + G R + L + G A K + Sbjct: 837 KGYVETLFGR---------RLYLPDIKSGNAILRKAAERVAINAPMQGTAADIIKVAMIG 887 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + +D Sbjct: 888 IDNAIRDN---------------------------------------------------- 895 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAE 666 D + M +V E + ++ M S +PL AE Sbjct: 896 DEIKMIM-QVHDE-----------LVFEVKADKIDHYSQLIKTEMEKAIS--LKVPLIAE 941 Query: 667 GYESKRY 673 + + Sbjct: 942 VGVGENW 948 >gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. OVINE] Length = 952 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 99/727 (13%), Positives = 196/727 (26%), Gaps = 186/727 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53 + +D ET S A ++ +F ++ H Sbjct: 353 RLIAVDTETDSLD----------AMSANLVGISFALENGEACYIPLGHKQKAQPQQADMF 402 Query: 54 ------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 LK L N ++ + N ++ T+ +++ Sbjct: 403 GDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQ 461 Query: 90 IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 T++ + + + + G + I E Sbjct: 462 GVA-FDTMIESYTQNSTGRHNMDDLAARY--------LGHKTIPF----EELAGKGKNQL 508 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY-----------LDQTINDRG 196 + EY D VT ++ + L +E EL + I G Sbjct: 509 TFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGVLSRIERNG 568 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 +D T + ++ +++ + + + ++L+ LF + GL + T Sbjct: 569 VLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQT-FNLASTKQLQEILFEKLGLPVLKKTP 627 Query: 257 ----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFL 311 +T + VL + ++ S+ + L + +N GR+ + Sbjct: 628 KGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRVHTSYNQA 687 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 + TGR S QN+P + +R +A Sbjct: 688 V-TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAFVAR 721 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 EG K+V AD + IE R++A ++ ++ + AF G+D++ T A F V +VT +QR Sbjct: 722 EGYKIVAADYSQIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRS 781 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + L Y + L + + + + + F ++E E Sbjct: 782 AKAINFGLIYGMS-----SFGLSNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVE 836 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSE----LWNELHQAFEQTIENGKAIIARKRRDVP 547 + G R + L + G A K + Sbjct: 837 KGYVETLFGR---------RLYLPDIKSGNAILRKAAERVAINAPMQGTAADIIKVAMIG 887 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + +D Sbjct: 888 IDNAIRDN---------------------------------------------------- 895 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAE 666 D + M +V E + ++ M S +PL AE Sbjct: 896 DEIKMIM-QVHDE-----------LVFEVKADKIDHYSQLIKTEMEKAIS--LKVPLIAE 941 Query: 667 GYESKRY 673 + + Sbjct: 942 VGVGENW 948 >gi|150390874|ref|YP_001320923.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF] gi|149950736|gb|ABR49264.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF] Length = 897 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 100/673 (14%), Positives = 196/673 (29%), Gaps = 152/673 (22%) Query: 29 CVILFAFGFDDHPVELWDC---VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 ++ F + + D + +KE LE+ ++ + H+ E + + Sbjct: 345 HILAITFSVNGEKLYYIDVRDFSDKEALLIQIKEVLEDEEIHKIGHDIKHEI---RHFYV 401 Query: 86 LDIPIHRW-ICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 DI + T++ ALK + + + M E E Sbjct: 402 HDIEMKNVTFDTMIGEYLIDPAKSSYALKDLAAQY-IGQEVMSE-----------EELRG 449 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQT 191 +Y V+V +I+ ++ E L + Sbjct: 450 KGKNLISIGEAPKEDLMKYLCQRVSVIGKIYPEIKAKMQELELEKLYYEVELPLVEVLAA 509 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + +G VD ++ L + L + + L + ++L LF + L Sbjct: 510 MEYKGIKVDRSMLEILEIEFGEQIDLLTKAIHEL-AETNFNINSPKQLGEVLFEKLELPP 568 Query: 252 EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGT 307 T+ +T VL + ++ R ++ ++ L+ +N + GR+ Sbjct: 569 IKKTKTGYSTNAEVLEKLQDQHDIIPKILEYRQ-VTKLKSTYVDGLLNIINPETGRIHSN 627 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 + TGR S QN+P L R Sbjct: 628 FNQTVTT-TGRISSTEPNLQNIPIKLEMGRRL-------------------------RKV 661 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 +A+E + + AD + +E RVLA + ++ L AF +D++ T A F+V +VT Sbjct: 662 FVANENHQFIDADYSQVELRVLAHICEDENLLDAFLKNQDIHTRTAAEIFDVPMEEVTDS 721 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R+ K + + Y GL+ Sbjct: 722 MRSSAKAVNFGIVYGIS---------DYGLS----------------------------- 743 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 ++ + K+ V +E+ EQ + G + Sbjct: 744 ------QNLNITRVKAKKYIDNYLDKYPSVKRYMDEI---VEQAHQQGYVVTLFN----- 789 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 R ++ + R +Q + Sbjct: 790 ------------------RRRYLPELKSRNF---NIRSFGERMAMNTP------IQGSAA 822 Query: 608 DILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKG 660 DI+ M+N + ++L VHDE++ E PD + A + M Sbjct: 823 DIIKIAMVNVYRRLKEQGLTSKLILQVHDELIVEAPDNEVEVAIKIVRESMEEAM--NLK 880 Query: 661 LPLKAEGYESKRY 673 + LK + + + Sbjct: 881 VQLKVDLAYANNW 893 >gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213] gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213] Length = 952 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 99/727 (13%), Positives = 196/727 (26%), Gaps = 186/727 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53 + +D ET S A ++ +F ++ H Sbjct: 353 RLIAVDTETDSLD----------AMSANLVGISFALENGEACYIPLGHKQKAQPQQADMF 402 Query: 54 ------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 LK L N ++ + N ++ T+ +++ Sbjct: 403 GDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQ 461 Query: 90 IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 T++ + + + + G + I E Sbjct: 462 GVA-FDTMIESYTQNSTGRHNMDDLAARY--------LGHKTIPF----EELAGKGKNQL 508 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY-----------LDQTINDRG 196 + EY D VT ++ + L +E EL + I G Sbjct: 509 TFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGVLSRIERNG 568 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 +D T + ++ +++ + + + ++L+ LF + GL + T Sbjct: 569 VLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQT-FNLASTKQLQEILFEKLGLPVLKKTP 627 Query: 257 ----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFL 311 +T + VL + ++ S+ + L + +N GR+ + Sbjct: 628 KGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRVHTSYNQA 687 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 + TGR S QN+P + +R +A Sbjct: 688 V-TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAFVAR 721 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 EG K+V AD + IE R++A ++ ++ + AF G+D++ T A F V +VT +QR Sbjct: 722 EGYKIVAADYSQIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRS 781 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + L Y + L + + + + + F ++E E Sbjct: 782 AKAINFGLIYGMS-----SFGLSNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVE 836 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSE----LWNELHQAFEQTIENGKAIIARKRRDVP 547 + G R + L + G A K + Sbjct: 837 KGYVETLFGR---------RLYLPDIKSGNAILRKAAERVAINAPMQGTAADIIKVAMIG 887 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + +D Sbjct: 888 IDNAIRDN---------------------------------------------------- 895 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAE 666 D + M +V E + ++ M S +PL AE Sbjct: 896 DEIKMIM-QVHDE-----------LVFEVKADKIDHYSQLIKTEMEKAIS--LKVPLIAE 941 Query: 667 GYESKRY 673 + + Sbjct: 942 VGVGENW 948 >gi|34541416|ref|NP_905895.1| DNA polymerase type I [Porphyromonas gingivalis W83] gi|34397733|gb|AAQ66794.1| DNA polymerase type I [Porphyromonas gingivalis W83] Length = 926 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 95/692 (13%), Positives = 191/692 (27%), Gaps = 149/692 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----PQVLKEA 60 D ET S L ++ + D + +L+ Sbjct: 357 SFDTETDSKDALR----------ANIVAITLCAESGRAFFIPLPEDEEIGKRRLDLLRPL 406 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEALKL 118 +T + V N ++ VL +++ + T++ L + + E L Sbjct: 407 FADTAIGKVGQNMKYDIQVLSRY-GIEVR-GQLFDTMIAHYLLFPDLRHNMDEMAETL-- 462 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 L + + + +Y D +T ++++RL + Sbjct: 463 ----------LGYCTVHYSDLVGSDKQEVHIRQVPLQNLADYAMEDADITWQLYERLNAM 512 Query: 179 SS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 S E L + + G +D + + E +++ E+ L Sbjct: 513 LSEAGMTSLFESIEMPLVPVLANMERSGVKLDTEVLRRTASGLGEEMQRIEDEIYRLAGH 572 Query: 229 LVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + ++ T LF E + T++ T + +L ++ P + + R Sbjct: 573 S-FNINSPSQVGTVLFEELQITEKPKKTKSGSYSTNEEILVKLQEKHPIVRLILDYR-GI 630 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L E DG+L + A+ TGR S QN+P + L Sbjct: 631 KKLLSTYVEALPEMRYPDGKLHTSFNQTVAT-TGRLSSSNPNLQNIPIRTEVGRGL---- 685 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAF 402 R+ + + AD + IE R++A ++ ++ ++AF Sbjct: 686 ---------------------RAAFVPDNDECIFMSADYSQIELRLMAHLSEDESLIQAF 724 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 GED++ T ++ + + +VT D R K + Y A + LN++ Sbjct: 725 LHGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYGISA-----FGLSERLNISRT 779 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + + + G +R + ++ V Sbjct: 780 EAKALIEGYFASYPGVKAYMDRSIAEAKRQGYVTTLFGR--KRFLRDINSANAVVRGY-- 835 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + G A L + + Sbjct: 836 -AERNAINAPIQGSAADLI-------------------------KLAMIRIHEEITERKL 869 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 +R M+ L VHDE+ + Sbjct: 870 RSR----------------------------MI----------LQVHDELNFNVLRPEAA 891 Query: 643 NASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 L M + +PL AE E + Sbjct: 892 EVRELVRSCMEGVMP-SLRVPLIAEIGEGANW 922 >gi|298387037|ref|ZP_06996591.1| DNA polymerase type I [Bacteroides sp. 1_1_14] gi|298260187|gb|EFI03057.1| DNA polymerase type I [Bacteroides sp. 1_1_14] Length = 949 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 96/694 (13%), Positives = 196/694 (28%), Gaps = 147/694 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 L +D ET + D ++ +F ++ + + Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 + EN + V N ++ VL+ + + T++ + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLENY-GVQVK-GALFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + ELI K + Y D VT ++ L Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDIYRYACEDADVTLKLKNVL 533 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E E L + I G +D + + +++QE+ L Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQEIYEL 593 Query: 226 TYGLVSSSRCLEKLKTWLFLET-GLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL S + P ++ +R Sbjct: 594 AG-ETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 652 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L + +N GR+ + + TGR S QN+P + +E Sbjct: 653 -GLKKLLGTYIDALPQLINPRTGRVHTSFNQ-TVTSTGRLSSSNPNLQNIPIRDENGKE- 709 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I EG AD + IE R++A ++ ++ + Sbjct: 710 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF + D++ T A+ + + V D R K + Y +N+ Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISV-----FGLAERMNV 800 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + E + + + + E + Sbjct: 801 DRKEAKELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIF-------------------- 840 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++R +P + + + + Sbjct: 841 ---------------------HRKRFLPDINSRNAVVRGYAERNA--------INAPIQG 871 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 ++ Y TE +QA M+ L VHDE+ P Sbjct: 872 SAADIIKVAMARIYQRFQTEG-IQA------K--MI----------LQVHDELNFSVPVN 912 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + ++ +PLKA+ K + Sbjct: 913 EKERVEEIVIE-EMEHAYRMHVPLKADCGWGKNW 945 >gi|253568986|ref|ZP_04846396.1| DNA polymerase I [Bacteroides sp. 1_1_6] gi|251841005|gb|EES69086.1| DNA polymerase I [Bacteroides sp. 1_1_6] Length = 949 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 96/694 (13%), Positives = 196/694 (28%), Gaps = 147/694 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 L +D ET + D ++ +F ++ + + Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 + EN + V N ++ VL+ + + T++ + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLENY-GVQVK-GALFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + ELI K + Y D VT ++ L Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDIYRYACEDADVTLKLKNVL 533 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E E L + I G +D + + +++QE+ L Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQEIYEL 593 Query: 226 TYGLVSSSRCLEKLKTWLFLET-GLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL S + P ++ +R Sbjct: 594 AG-ETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 652 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L + +N GR+ + + TGR S QN+P + +E Sbjct: 653 -GLKKLLGTYIDALPQLINPRTGRVHTSFNQ-TVTSTGRLSSSNPNLQNIPIRDENGKE- 709 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I EG AD + IE R++A ++ ++ + Sbjct: 710 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF + D++ T A+ + + V D R K + Y +N+ Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISV-----FGLAERMNV 800 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + E + + + + E + Sbjct: 801 DRKEAKELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIF-------------------- 840 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++R +P + + + + Sbjct: 841 ---------------------HRKRFLPDINSRNAVVRGYAERNA--------INAPIQG 871 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 ++ Y TE +QA M+ L VHDE+ P Sbjct: 872 SAADIIKVAMARIYQRFQTEG-IQA------K--MI----------LQVHDELNFSVPVN 912 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + ++ +PLKA+ K + Sbjct: 913 EKERVEEIVIE-EMEHAYRMHVPLKADCGWGKNW 945 >gi|27383242|ref|NP_774771.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110] gi|27356416|dbj|BAC53396.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110] Length = 1023 Score = 351 bits (900), Expect = 3e-94, Method: Composition-based stats. Identities = 97/693 (13%), Positives = 192/693 (27%), Gaps = 166/693 (23%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDP--------------------VMPQVLKEALENTDV 66 + A + H L+ LE++ + Sbjct: 447 QADLCGVALSLAPNDACYVPLAHKQSGGGAGLFDGGLAPDQVKHADAIDALRPVLESSGI 506 Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKM 123 + + F +L I + +++ L+++ E + Sbjct: 507 LKIGFDVKFTAVMLAQH---GITLRNTDDAQLISYVLDAGRGSHGLESLAER-WFGHAML 562 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 +EG+ L + + +++ L+P E Sbjct: 563 KEGELL-----------GSGKGKITFDQVPIDKAAPLSAEGADMALRVWRVLKPRLVAEH 611 Query: 184 ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L + + RG +D + L+ +++ E++ + V + Sbjct: 612 MTTVYETLERPLVAVLARMERRGISIDRQVLSRLSGDFAQTAARVEAEIQEIAGEPV-NV 670 Query: 234 RCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 +++ LF + L T+ +T +VL + + + S+ Sbjct: 671 GSPKQIGDILFGKMSLPGGTKTKTGAWSTTAQVLDELAEQGHDLPKKILEWRQVSKLKST 730 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L E +N T L A+ TGR S QN+P + + Sbjct: 731 YTDALPEYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRK----------- 779 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R IA+ G KLV AD + IE R+LA +A +AF G D++ Sbjct: 780 --------------IRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIH 825 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + F V + + R K + G++ Sbjct: 826 AMTASEMFGVPIKGMPSEIRRRAKAINF--------------GIIYGIS----------- 860 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A + K + ++ + +E Sbjct: 861 -------------------AFGLANQLGIAREEASAYIKKYFERFPGIRAYMDETRDF-- 899 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 ++G GR Y D+ + + + R Sbjct: 900 -CRQHGYVTTL-----------------------FGRKCHYPDIKASNA---SVRAFNER 932 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643 Q + DI+ M K ++L VHDE++ E PD + Sbjct: 933 AAINARL------QGTAADIIRRAMTRVEDALAEKKLSAQMLLQVHDELIFEVPDAEVEA 986 Query: 644 -ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++ H+M P+ +PL + +K + Sbjct: 987 TLPVVQHVMQDAPFPAVLLSVPLHVDARAAKNW 1019 >gi|319409706|emb|CBY90010.1| DNA polymerase I (POL I) [Neisseria meningitidis WUE 2594] Length = 938 Score = 351 bits (900), Expect = 3e-94, Method: Composition-based stats. Identities = 113/701 (16%), Positives = 203/701 (28%), Gaps = 147/701 (20%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V + + ++ + L Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 460 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 507 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 508 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL P Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 684 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 VR A +G +V AD + IE R++A ++ Sbjct: 685 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 719 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G + Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 774 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + +E + G R K Sbjct: 775 AKSLGIDNISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRNK 832 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + + L Sbjct: 833 NTNARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKL----- 884 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 I+Q +VL E+V Sbjct: 885 ---------------------------IMQ-------------VHDE---LVL----EVV 897 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +T+ L +M +PL AE + + Sbjct: 898 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 934 >gi|167045540|gb|ABZ10192.1| putative DNA polymerase family A [uncultured marine microorganism HF4000_APKG10H12] Length = 891 Score = 351 bits (900), Expect = 3e-94, Method: Composition-based stats. Identities = 93/676 (13%), Positives = 186/676 (27%), Gaps = 152/676 (22%) Query: 30 VILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSYFERTV 79 V+ AF + L LE+ V + H+ + Sbjct: 333 VVGLAFSTAARSASYVPLAQDGLDLTGSLDGGTVFGTLGPMLEDPQVRKIGHDLKRDMLW 392 Query: 80 LKACFNLDIPIHRWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138 L A +I + T++ + + + + + +T Sbjct: 393 LAAH---EIRLRGLELDTMIASYLLDATRT---------TPTVETVALEHAGYQALTADT 440 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYL 188 + R Y + + + L +E Q L + Sbjct: 441 VRGKGAKAPDFDRLPPDGVLAYACERADLPLQAAEPLRARLDQERLAELYRELEQPLIPV 500 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 I G V ++ +D + ++L ++ +L + +L LF + Sbjct: 501 LADIETAGIQVATDALAVQSRRMDADLSELQSQIYTLAG-EEFNINSPRQLSAILFEKLA 559 Query: 249 LHLEDLT-----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-G 302 L T +T VL ++ + ++ L + + D G Sbjct: 560 LPTRKKTGKTRAASTAADVLEELA-QHHALPRLVIEWRAVQKLKGTYVDALPQLVRPDTG 618 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 R+ + A+ TGR S QN+P + E Sbjct: 619 RVHTSFNQAVAA-TGRLSSSDPNLQNIPIRTPLGRE------------------------ 653 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R +A +G L+ AD + IE RVLA ++ + +AF ED++ T Sbjct: 654 -IRRAFVARDGHVLISADYSQIELRVLAHLSADTALTQAFIRNEDIHDKT---------- 702 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 A +GL+ + N+ Sbjct: 703 ------------------------ALHVFGPDSGLDAHEL----------RRRAKIINYA 728 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + + + A + A+ + + V + + ++ E Sbjct: 729 LLYGKTAFTLSRDIGVTPQAAQAFIDAYFEGYPAVRGFLDGVIDEARESGE--------- 779 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 + GR + ++ N R + Sbjct: 780 -----------------VRTMFGRRRLVPELRNRN---GQIRAAAERV------TVNMPI 813 Query: 603 QAVSRDILAEGMMNATKA---GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA 658 Q + DIL M++ A ++LTVHDE++ E P + + + L M Sbjct: 814 QGTAADILKRAMIDLAGALPPSAPMILTVHDELLIEPPRDEADSVADLVRDRMERAAD-- 871 Query: 659 KGLPLKAEGYESKRYR 674 +PL+ + + + Sbjct: 872 LTVPLRVDVGIGENWM 887 >gi|29348669|ref|NP_812172.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482] gi|29340574|gb|AAO78366.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482] Length = 949 Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 98/694 (14%), Positives = 196/694 (28%), Gaps = 147/694 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 L +D ET + D ++ +F ++ + + Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 + EN + V N ++ VL+ + + T++ + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLENY-GVQVK-GALFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + ELI K + Y D VT ++ L Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDIYRYACEDADVTLKLKNVL 533 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E E L + I G +D + + +++QE+ L Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQEIYEL 593 Query: 226 TYGLVSSSRCLEKLKTWLFLET-GLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL S + P ++ +R Sbjct: 594 AG-ETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 652 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L + +N GR+ + + TGR S QN+P + +E Sbjct: 653 -GLKKLLGTYIDALPQLINPRTGRVHTSFNQ-TVTSTGRLSSSNPNLQNIPIRDENGKE- 709 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I EG AD + IE R++A ++ ++ + Sbjct: 710 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF + D++ T A+ + + V D R K + Y +N+ Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISV-----FGLAERMNV 800 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + E + + + + E + +R +++ V Sbjct: 801 DRKEAKELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHR--KRFLPDINSRNAVVRG 858 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G A Sbjct: 859 Y---AERNAINAPIQGSAADII-------------------------------------- 877 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 ++ Y TE +QA M+ L VHDE+ P Sbjct: 878 ------KVAMARIYQRFQTEG-IQA------K--MI----------LQVHDELNFSVPVN 912 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ + ++ +PLKA+ K + Sbjct: 913 EKERVEEIVIE-EMEHAYRMHVPLKADCGWGKNW 945 >gi|332300236|ref|YP_004442157.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707] gi|332177299|gb|AEE12989.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707] Length = 948 Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 109/702 (15%), Positives = 204/702 (29%), Gaps = 142/702 (20%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQV 56 ++ + D ET L ++ + D+ + Sbjct: 356 ISVVAFDTETDGLDALC----------AGIVGMSLCADEQQAYFIPLPESAEEAAHILSP 405 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGE 114 LK+ +++ V VAHN+ F+ VL H T++ +L + Sbjct: 406 LKDLMQDERVLKVAHNAKFDLEVLTRYGL--PEAHPLYDTMLAHYLIDADQGHSLDELA- 462 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L+ + +L +Y D VT ++ Sbjct: 463 ------------GGLLRYDTIRYKDLAPQESFALRTDVDPKLLCDYASEDAYVTLRLYHA 510 Query: 175 LEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L E L Y+ + RG +D+ Q + +L++E++S Sbjct: 511 LHKQLSPTEQRLLTEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLESVLRLEKEIQSY 570 Query: 226 T-YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 + GL +++ LF E + T+T T + L + L P + + Sbjct: 571 SSRGLNLKVNSPKQIGELLFDELKIMEKPRKTKTGNYVTNEETLLPLRSLHPVVALILDY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R A + ++ L + DG+L + + TGR S QN+P S L Sbjct: 631 R-EARKLLNTYIDPLPKMCYPDGKLHTSYNQAV-TATGRLSSSNPNLQNIPIRSDLGRPL 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + P + G L+ AD + +E RV+A ++ + + Sbjct: 689 RRAFVADPYYTPRLSACTPVDHTH-----EEPIGAVLLSADYSQVELRVMAHLSQDPAMI 743 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +F +G+D++ T A+ F VAP +VT R+ K + G+ Sbjct: 744 HSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGI--------------NYGITP 789 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + K + + + Sbjct: 790 YGLSQR------------------------------LNIPVGEAAELIKEYFATFTHIQA 819 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 NE + GR R++ R+ Sbjct: 820 FMNEAIALATE--------------------------RGYTETAFGRRRQLRNL---RTA 850 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIV 633 R +Q + DI+ M+ + +VL VHDE+V Sbjct: 851 RGAQRGNEERNAINAP------IQGTAADIIKIAMIRVEEELTKQQLRSYLVLQVHDELV 904 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAK-GLPLKAEGYESKRY 673 + +++ M W + +PL E K + Sbjct: 905 LNVYLDELDRVTALVREAMEGA--WPECSVPLVVEIGTGKDW 944 >gi|331090256|ref|ZP_08339143.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401875|gb|EGG81450.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium 3_1_46FAA] Length = 419 Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 130/404 (32%), Positives = 202/404 (50%), Gaps = 17/404 (4%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59 TL ID ET S +DL KCG+ YA+ ++LFA+ FDD ++ D + + +K Sbjct: 7 KTLAIDIETFSDVDLIKCGVYAYADSPAFEILLFAYSFDDEETKIIDLAQGEQLTEEIKN 66 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 AL + + A N+ FERT L + + W+CT V + LP +L+ VG L LS Sbjct: 67 ALSDVGIIKTAFNANFERTCLSKYMGVRLSPESWVCTAVQSAMLALPLSLEGVGAVLGLS 126 Query: 120 SQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKRL 175 QK++EGK+LI F CK RN P H E W+ F YC DV V + I ++L Sbjct: 127 EQKLKEGKDLIRYFCVPCKPTKTNGGRSRNLPFHAPEKWKQFKTYCIRDVDVEKGIRQKL 186 Query: 176 E--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 P+ E + LDQ INDRG VD L + + + +T + + Sbjct: 187 HKFPIPESEMAFYRLDQEINDRGVLVDRELVEQSITCDLLHKDIVTNRAYEVTG--LENP 244 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 + +LK WL G+ ++ L++ ++ + ++ R+ ++++V K Sbjct: 245 NSVSQLKGWLSER-GVEIDSLSKGAVAELIE---DADGEVLEALKLRLLMAKTSVKKYEA 300 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLPTSI 350 + ++ SDGR+ G LQF GA+RTGRW+G + QNLP+ S EL + + Sbjct: 301 IERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHISDLELARSLVRRGQFEELE 360 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 ++S+ +R+ I EG + +VAD + IEARVLAW++G Sbjct: 361 LFYESTPNVLSELIRTAFIPKEGCRFIVADFSAIEARVLAWLSG 404 >gi|295706848|ref|YP_003599923.1| DNA polymerase I [Bacillus megaterium DSM 319] gi|294804507|gb|ADF41573.1| DNA polymerase I [Bacillus megaterium DSM 319] Length = 875 Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 97/678 (14%), Positives = 192/678 (28%), Gaps = 133/678 (19%) Query: 11 RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTI 68 S L G + ++ F ++ D K LE+ V Sbjct: 312 TSEAALIVEGYEENYHHNQLLGFGISNNNGH-YFID---KDTALSSSKFKAWLEDGRVKK 367 Query: 69 VAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 N RT++ +I ++ + A + KL + Sbjct: 368 TVFNGK--RTIVSLKWAGHEIKGIE-HDVMIASYILNPAEANDDLATIAKLKGYHQVQSD 424 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187 E + + KG H Y K + ++ E E L Sbjct: 425 EAV--YGKGAKRSIAEADQLAEHVIRKAAAVAYLKEVLEKELVENEQFELFEKLEMPLAI 482 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + +G +D A + + + + K++ ++ G + ++L LF + Sbjct: 483 VLADMEYQGVKIDRARLDEMGEDLREQLEKIEAKIYE-YAGQEFNINSPKQLGVVLFEKM 541 Query: 248 GLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGR 303 L + T+ +T VL ++ R + + L + ++ SDG+ Sbjct: 542 QLPVIKKTKTGYSTSADVLEQLASTHDIIPEILQYRQ-LGKLQSTYIEGLKKVIHESDGK 600 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + ++TGR S QN+P ++ Sbjct: 601 VHTRFNQ-TLTQTGRLSSVDPNLQNIPIRLEEGKK------------------------- 634 Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + S G + AD + IE RVLA +A ++ + AF+ D++ T F+V Sbjct: 635 IRGAFVPSQPGWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHTKTAMDVFHVERE 694 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT + R K + G++ + Sbjct: 695 EVTANMRRQAKAVNF--------------GIVYGISDYGLSQ------------------ 722 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 A + + + V E + + E G Sbjct: 723 ------------SLGITRKAAATFIERYLKSFPGVQEYMDTI---VRDAKEKGYVTTLLH 767 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 R ++ + R + Sbjct: 768 -----------------------RRRYLPEITSRNF---NLRSFAERTAMNTP------I 795 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655 Q + DI+ + M+ K ++L VHDE++ E P+ + + +M + Sbjct: 796 QGTAADIIKKAMIEMDKRLKDENLQAKLLLQVHDELIFEAPEEEIKILEKIVPEVMENAL 855 Query: 656 SWAKGLPLKAEGYESKRY 673 +PLK + K + Sbjct: 856 E--LEVPLKVDYSYGKTW 871 >gi|15677811|ref|NP_274975.1| DNA polymerase I [Neisseria meningitidis MC58] gi|7227243|gb|AAF42310.1| DNA polymerase I [Neisseria meningitidis MC58] Length = 938 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 112/701 (15%), Positives = 202/701 (28%), Gaps = 147/701 (20%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK L N + + N +++ V + + ++ + L Sbjct: 402 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 460 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 507 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 508 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL P Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 684 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + VR A +G +V AD + IE R++A ++ Sbjct: 685 EEGRK-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 719 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F AP V+ +QR K + L Y G + Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKSINFGLIYGMG-----QYGL 774 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + +E + G R K Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 832 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + + L Sbjct: 833 NANARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKL----- 884 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 I+Q +VL E+V Sbjct: 885 ---------------------------IMQ-------------VHDE---LVL----EVV 897 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +T+ L +M +PL AE + + Sbjct: 898 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 934 >gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269] gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269] Length = 920 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 91/693 (13%), Positives = 186/693 (26%), Gaps = 147/693 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----HDPVMPQVLK 58 L +D ET S + D ++ +F ++ + + K Sbjct: 349 ILSLDTETTSTNPI----------DAELVGLSFAVEEKKAFYVPIPSNRQEAQKIVNIFK 398 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 EN D+ V N ++ VL + + + T++ + + E L Sbjct: 399 PIYENPDILKVGQNLKYDLEVLHNY-GVTLK-GKMFDTMLAHYVIQPELRHNMDYMAETL 456 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + ELI K + EY D +T ++ LE Sbjct: 457 --LNYRTIHIDELIG---------PRGKNQKSMRELDPKEVYEYAAEDADITLQLKNVLE 505 Query: 177 PLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + L + I G +D + I+ + E+ L Sbjct: 506 TKLKEMECEDLFWNIEMPLMPVLAEIEMNGVVIDTDSLRETSAILTKRMQDYEHEIYQLA 565 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF + + T+T T + VL + +P ++ R Sbjct: 566 G-EEFNISSPKQVGDILFGKMKIVEKPKKTKTGQFVTSEEVLQQLENKSPIVAKILEYR- 623 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ L + +N T + TGR S QN+P +E Sbjct: 624 GLKKLLGTYVDALPKLINPRTGHIHTSFNQAITATGRLSSSDPNLQNIPVRGEDGKE--- 680 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R C I G AD + IE RV+A ++ ++ ++A Sbjct: 681 ----------------------IRKCFIPEPGCLFFSADYSQIELRVMAHLSSDKNMIEA 718 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G D++ T A+ + +VT+D+R K + Y L+++ Sbjct: 719 FMHGYDIHAATAAKIYKKPIEEVTRDERNKAKRANFGIIYG-----ITTYGLAQRLDIDN 773 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 E + + + + + R ++ V Sbjct: 774 REAKELIEGYFETFPQVYEYMERAKADARAKGYAETLFHR--RRYLPDINSHNATVRGY- 830 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + G A K + Sbjct: 831 --AERNAINAPIQGSAADIIK-----------------------------------VAMI 853 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 + + RE + + + + ++ Sbjct: 854 RISDRFKRENIHSKLI-----------------LQVHDE-----------LNFSVYPDEK 885 Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + M + + +PL A+ + Sbjct: 886 EKVERIVLEEMQNA--YPLRVPLVADAGWGSNW 916 >gi|158320241|ref|YP_001512748.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs] gi|158140440|gb|ABW18752.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs] Length = 894 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 104/680 (15%), Positives = 205/680 (30%), Gaps = 141/680 (20%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDC--VHDPVMPQVLKEALENTDVTIVAHNS 73 L ++ A + + + LK+ LE+ + I+ H+ Sbjct: 330 LKTITEENNIVTDRIVALAMTTTGEIQYYIEFKDFKESDIISPLKDILEDEHIRIIGHDL 389 Query: 74 YFERTVLKACFNLDIPIHR-WICTLVLARSNGLPSA---LKAVG-EALK---LSSQKM-E 124 E + +I I + T+V + LK + E L + +K+ Sbjct: 390 KKEII---HFYPYEIHIANLYFDTMVGEYLLNPAKSSYLLKDLALEYLGEEIIDEEKIVG 446 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 +GK ++ + E N + + D + +++ E Sbjct: 447 KGKNQLSLWAAPENEVKALLCNHVKVIAELAKYIQEKIEDQGI-HKLYY------EVELP 499 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + ++ G VD + L KL E+ SL + ++L LF Sbjct: 500 LVEVLASMEFLGIKVDRNMLLALEVEFKEIIDKLTSEIYSLAGIS-FNINSPKQLGEVLF 558 Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS- 300 + GL T+ +T VL + ++ R ++ ++ L+ +N Sbjct: 559 EKLGLPPTKKTKTGYSTNADVLEKLQDQHEIIPKISEYRQ-VTKLKTTYVDGLLSIINPV 617 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 R+ + + TGR S QN+P L Sbjct: 618 TNRIHSSFNQ-TVTATGRISSTEPNLQNIPVRLEMGRRL--------------------- 655 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 R I+ EG + + AD + IE RVLA +A + + AF +D++ T + F V Sbjct: 656 ----RKVFISKEGHEFIDADYSQIELRVLAHIAKDDNLIDAFIKNQDIHTRTASEIFEVP 711 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 +VT R K + + Y + LN+ Sbjct: 712 MEEVTSLMRGDAKAVNFGIVYGIS-----DFGLSQNLNIPVS------------------ 748 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 ++ +++ +K+ + E + + E+ E G + Sbjct: 749 ---------------------KAKKYIESYFEKYPSIKEYMHNI---VEEGKEKGYVVTL 784 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 R ++ ++ R Sbjct: 785 LN-----------------------RRRYLPELKSSNF---NIRSFGERIAMNTP----- 813 Query: 601 IVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTS 653 +Q + DI+ M+ ++L VHDE++ E P+ + S + M + Sbjct: 814 -IQGSAADIIKIAMIAVYNRLKAENYDAKLILQVHDELIIECPENEIEEVSKILKESMEN 872 Query: 654 NPSWAKGLPLKAEGYESKRY 673 +PLK + + + Sbjct: 873 AIEMV--VPLKVDLSYANNW 890 >gi|187478878|ref|YP_786902.1| DNA polymerase I [Bordetella avium 197N] gi|115423464|emb|CAJ49998.1| DNA polymerase I [Bordetella avium 197N] Length = 904 Score = 350 bits (897), Expect = 6e-94, Method: Composition-based stats. Identities = 106/700 (15%), Positives = 188/700 (26%), Gaps = 161/700 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53 + +D ET S ++ ++ + + H + Sbjct: 332 VALDTETTSLDEM----------QARLVGLSMAVEPGVACYIPLAHRGPEAGTQLPKQEV 381 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111 + L+ LE+ + + H++ ++ V + + T++ A L Sbjct: 382 LERLRGWLEDATRSKLLHHAKYDTHVFAN-EGIALR-GVTEDTMLQAYVLESHRGVGLND 439 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + L E + A G Y D T ++ Sbjct: 440 LAQRY------------LGRSGVNYEDLCGKGAKQIGFDEVAVDRAGFYAAEDADFTLQL 487 Query: 172 FKRLEPLSSKEQELW--------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + L P + E E + I G VD + + E L+Q Sbjct: 488 HQALRPGVTGELERIYKLELEVSRVLVAIERNGVKVDAEELGRQSHELGREMLALEQRAY 547 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNN 279 L + ++L LF GL + T +T + VLS + P + Sbjct: 548 ELAGQP-FNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQVLLEY 606 Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ + L +N GR+ A TGR + QN+P + + Sbjct: 607 R-GLSKLKSTYTDKLPRMINPATGRVHTHYSQA-AVITGRLASSDPNLQNIPVRTLAGRR 664 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 VR +A LV AD + IE R++A ++ + Sbjct: 665 -------------------------VREAFVADGDGLLVSADYSQIELRIMAHVSDDANL 699 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +AF GED++ T A F V +VT +QR K + L Y G + L Sbjct: 700 QRAFAAGEDIHRATAAEVFGVPLPEVTSEQRRAAKAINFGLIYGMGV-----FGLASNLG 754 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + A + + + + E + G + + Sbjct: 755 ITRDAAQAYIDRYFARYPGVARYMDDTRRLAREQGYVETVFGRRLQL---------PDIR 805 Query: 519 EL----WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +A G A K V + + Sbjct: 806 AASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQDWLVSQRL----------------- 848 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 +R I+ +VL Sbjct: 849 ------------------------------SARLIM-----QVHDE---LVL-------- 862 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P + + LM+ A +PL AE + Sbjct: 863 EVPAVELDLVRETVPRLMSEVA--ALRVPLIAEVGVGHNW 900 >gi|203284454|ref|YP_002222194.1| DNA polymerase I [Borrelia duttonii Ly] gi|201083897|gb|ACH93488.1| DNA polymerase I [Borrelia duttonii Ly] Length = 922 Score = 350 bits (897), Expect = 6e-94, Method: Composition-based stats. Identities = 98/699 (14%), Positives = 205/699 (29%), Gaps = 162/699 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------MPQ 55 + ID ET S + +I + F + + Q Sbjct: 355 YIAIDTETTSIN----------VYESNIIGISVSFKEFESYYIPIETKEKNSIGKEYIIQ 404 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVG 113 E N+ ++ N F+ VLK ++ I + T++ A +L + Sbjct: 405 KFNELF-NSQPKLIGQNYKFDYKVLKRH-GFNV-ISAYFDTMIAAYVIDPNTKVSLDFLA 461 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + I E + ++ + Y D +T +F Sbjct: 462 AKYLM--------HKNIKY-------EEIVPQHSTLKDIPLEIASNYAAEDADITFRLFN 506 Query: 174 RLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L E + + + G +D ++ E ++ E+ Sbjct: 507 ILRKKLKEDNLESLMKNIEMPFSNVIIEMEENGIYLDSNYLTQYGHELEQELKTIENEVI 566 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTETTCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L T LF + + + ++T +VL + K ++ N R Sbjct: 567 QSIGI-EFNLNSSKQLHTILFEKLNIIVPKNVKQDSTDIKVLETIKDQHESIEKLINYRQ 625 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ + L+E +N T + TGR S QN+P + + Sbjct: 626 -LAKLKNTYTDNLIEFINEKTNKIHTNFIQTKTATGRISSTAPNLQNIPIKNERGRK--- 681 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R+ ++G + AD + IE +LA ++ ++ ++A Sbjct: 682 ----------------------IRAAFKPTKGNIFISADYSQIELVILAHLSEDESLIEA 719 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F +D+++ T ++ F V A +T R I K + ++ Sbjct: 720 FTHKKDIHIQTASKLFKVDEANITPSMRRIAKSIN--------------FGIIYRMSAFR 765 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + + ++ +S++ Sbjct: 766 LSQELSIK------------------------------REEAQNFIDSYFNLYSKIKTFI 795 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 +Q N R R++ + Sbjct: 796 QNQIDFVKQ--------------------------NGYSETLLKRRRYIREINSQNYLER 829 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635 T R +I+Q + DI+ M+ I+L VHDE++ E Sbjct: 830 T---GAERMAI------NSIIQGSASDIMKIAMIKVYNEFKNNNLKSKILLQVHDEMLIE 880 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 +P+ + A ++ M N ++ +PLK K + Sbjct: 881 SPEEECEKAQIIIKEMMEN-AYPLKIPLKTNIETGKSWG 918 >gi|325917393|ref|ZP_08179607.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937] gi|325536394|gb|EGD08176.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937] Length = 926 Score = 349 bits (896), Expect = 7e-94, Method: Composition-based stats. Identities = 96/700 (13%), Positives = 183/700 (26%), Gaps = 159/700 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S L +I + + HD Sbjct: 351 AFDTETDSLDPL----------QANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQAL 400 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 L L + + + + ++ V++ +++ + TL+ + + + Sbjct: 401 AQLAPLLTDPALRKLGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDMDS 458 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + G + + E + + + Y D +T + Sbjct: 459 LAKRY--------LGYDTVKY----EDVCGKGAKQIKFAQVSLEDATRYAAEDADITLRL 506 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E L + I G CVD A + + Q Sbjct: 507 HQVLGPKLSAEPGLERVYRDIEMPLVEVLARIEANGVCVDAAELRRQSADLSKRMLAAQQ 566 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF E L +T + L + + Sbjct: 567 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 625 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L E ++ GR+ + GA+ TGR S QN+P + Sbjct: 626 LEYR-GLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 683 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G+KL+ D + IE R++A ++G+ Sbjct: 684 GRR-------------------------IRRAFVAPPGRKLIACDYSQIELRIMAHLSGD 718 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+G D++ T A F V+ D+R K + L Y A Sbjct: 719 PGLVSAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSA-----FGLAR 773 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE-RVKKAWRQKH 514 L + + +F ++ + + G A Sbjct: 774 QLGIGRGEAQDYIALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINA----- 828 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +A G A KR V + + R+L+ V Sbjct: 829 -GSQGQRAGAERAAINAPMQGTAADIIKRAMVSVDGWIAEHAQ--------RALMILQVH 879 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + + DI Sbjct: 880 DELVFE--------------------------ADI------------------------- 888 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 S + M + +PL + + Sbjct: 889 ----DFVDTLLSEVTARMATAAQ--LRVPLVVDSGVGDNW 922 >gi|325129412|gb|EGC52244.1| DNA polymerase I [Neisseria meningitidis OX99.30304] Length = 937 Score = 349 bits (896), Expect = 7e-94, Method: Composition-based stats. Identities = 113/701 (16%), Positives = 203/701 (28%), Gaps = 147/701 (20%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 351 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAIYIPVGHSLTAAPEQLDLQ 400 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V + + ++ + L Sbjct: 401 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 458 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 459 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 506 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 507 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 566 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL P Sbjct: 567 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 625 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 626 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 683 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 VR A +G +V AD + IE R++A ++ Sbjct: 684 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 718 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G + Sbjct: 719 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 773 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + +E + G R K Sbjct: 774 AKSLGIDNISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRNK 831 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + + L Sbjct: 832 NTNARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKL----- 883 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 I+Q +VL E+V Sbjct: 884 ---------------------------IMQ-------------VHDE---LVL----EVV 896 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +T+ L +M +PL AE + + Sbjct: 897 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 933 >gi|90408664|ref|ZP_01216816.1| DNA polymerase I [Psychromonas sp. CNPT3] gi|90310240|gb|EAS38373.1| DNA polymerase I [Psychromonas sp. CNPT3] Length = 936 Score = 349 bits (896), Expect = 8e-94, Method: Composition-based stats. Identities = 105/711 (14%), Positives = 202/711 (28%), Gaps = 172/711 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFG--FDDH-------PVELWDCVHDP---- 51 I ET + ++ F+F D HD Sbjct: 352 SISIETTCADYM----------QAKIVGFSFALQVADENSAEITIEAFYLPLAHDYIDAP 401 Query: 52 ------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 LK LE V N F R+VL +++ ++ + Sbjct: 402 AQLEYLATLDKLKPLLEKIAPQKVVFNLKFMRSVL-RLEGINLQGVA-FDPMLESYLLDS 459 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 LK L E + P ++ + + Y V Sbjct: 460 TGKHDKASLTLKY----------LQIEIASYEAIAGKGKKQLPFNQVSIKDITPYVGEHV 509 Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVE 214 ++ + L P K +L L + I G +D + + + Sbjct: 510 ELSLRLHLLLWPKLEKFPKLVALYEDIELPLAIVLSDVELGGVEIDATMLGAQSVEIGKR 569 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLT 270 ++++E + G + ++L++ LF + L +T + VL + Sbjct: 570 LLEIEKEAY-IEAGKEFNLSSPKQLQSILFEDLELPILKKTPKGAPSTGEEVLVELAETY 628 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 V +R S+ + L + +N+ T + TGR S QN+P Sbjct: 629 KLPKLVIEHR-GLSKLKSTYTDKLPKMINAQTGRVHTSYHQAVTVTGRLSSSDPNLQNIP 687 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 S +R IA +G K+V AD + IE R++A Sbjct: 688 IRSEQGRR-------------------------IRQAFIAPQGYKIVAADYSQIELRIMA 722 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ ++ L+AF TG D++ T + F+V+ +VT +QR K + Sbjct: 723 HLSQDKGLLEAFSTGLDIHKATASEVFSVSVDEVTTNQRRSAKAINF------------- 769 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 G++ A + + + + Sbjct: 770 -GLIYGMS------------------------------AFGLAKQLKISRSDAKLYMDKY 798 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 ++ V + + GR L Sbjct: 799 FHRYPGVLTYMQTTRDKARE--------------------------QGFVETILGRRLQL 832 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYD 623 + + L + R +Q + DI+ + M++ + Sbjct: 833 PHINSRNGILK---KASERAAINAP------MQGTAADIIKKAMLDVAAWVEKQAPSQVQ 883 Query: 624 IVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++ VHDE+V + N + ++ +M +PL AE + Sbjct: 884 LLMQVHDELVFCIKEDQVENYTCIIQEIMAKAV--ILDVPLLAEVGVGNNW 932 >gi|325201030|gb|ADY96485.1| DNA polymerase I [Neisseria meningitidis H44/76] Length = 916 Score = 349 bits (895), Expect = 9e-94, Method: Composition-based stats. Identities = 112/701 (15%), Positives = 202/701 (28%), Gaps = 147/701 (20%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 330 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 379 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK L N + + N +++ V + + ++ + L Sbjct: 380 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 437 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 438 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 485 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 486 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 545 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL P Sbjct: 546 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 604 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 605 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 662 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + VR A +G +V AD + IE R++A ++ Sbjct: 663 EEGRK-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 697 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F AP V+ +QR K + L Y G + Sbjct: 698 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 752 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + +E + G R K Sbjct: 753 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 810 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + + L Sbjct: 811 NANARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKL----- 862 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 I+Q +VL E+V Sbjct: 863 ---------------------------IMQ-------------VHDE---LVL----EVV 875 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +T+ L +M +PL AE + + Sbjct: 876 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 912 >gi|313885797|ref|ZP_07819541.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica PR426713P-I] gi|312924751|gb|EFR35516.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica PR426713P-I] Length = 948 Score = 349 bits (895), Expect = 1e-93, Method: Composition-based stats. Identities = 108/700 (15%), Positives = 202/700 (28%), Gaps = 142/700 (20%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58 + D ET L ++ + D+ + LK Sbjct: 358 VVAFDTETDGLDALC----------AGIVGMSLCADEQQAYFIPLPESAEEAAHILSPLK 407 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116 + +++ V VAHN+ F+ VL H T++ +L + Sbjct: 408 DLMQDERVLKVAHNAKFDLEVLTRYGL--PEAHPLYDTMLAHYLIDADQGHSLDELA--- 462 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 L+ + +L +Y D VT ++ L Sbjct: 463 ----------GGLLRYDTIRYKDLAPQESFALRTDVDPKLLCDYASEDAYVTLRLYHALH 512 Query: 177 PLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT- 226 E L Y+ + RG +D+ Q + +L++E++S + Sbjct: 513 KQLSPTEQRLLTEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLESVLRLEKEIQSYSS 572 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 GL +++ LF E + T+T T + L + L P + + R Sbjct: 573 RGLNLKVNSPKQIGELLFDELKIMEKPRKTKTGNYVTNEETLLPLRSLHPVVALILDYR- 631 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 A + ++ L + DG+L + + TGR S QN+P S L + Sbjct: 632 EARKLLNTYIDPLPKMCYPDGKLHTSYNQAV-TATGRLSSSNPNLQNIPIRSDLGRPLRR 690 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 P + G L+ AD + +E RV+A ++ + + + Sbjct: 691 AFVADPYYTPRLSACTPVDHTH-----EEPIGAVLLSADYSQVELRVMAHLSQDPAMIHS 745 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F +G+D++ T A+ F VAP +VT R+ K + G+ Sbjct: 746 FLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGI--------------NYGITPYG 791 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + K + + + Sbjct: 792 LSQR------------------------------LNIPVGEAAELIKEYFATFTHIQAFM 821 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 N+ + GR R++ R+ Sbjct: 822 NKAIALATE--------------------------RGYTETAFGRRRQLRNL---RTARG 852 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCE 635 R +Q + DI+ M+ + +VL VHDE+V Sbjct: 853 AQRGNEERNAINAP------IQGTAADIIKIAMIRVEEELTKQQLRSYLVLQVHDELVLN 906 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAK-GLPLKAEGYESKRY 673 + +++ M W + +PL E K + Sbjct: 907 VYLDELDRVTALVREAMEGA--WPECSIPLVVEIGTGKDW 944 >gi|257460112|ref|ZP_05625216.1| DNA polymerase I [Campylobacter gracilis RM3268] gi|257442553|gb|EEV17692.1| DNA polymerase I [Campylobacter gracilis RM3268] Length = 938 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 106/697 (15%), Positives = 199/697 (28%), Gaps = 158/697 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-VMPQVLKEALEN 63 ID ET D I ++ ++ F+F F++ H P + Sbjct: 370 SIDAETLVSFDTETTSID--SKSAKIVGFSFAFNEERAYYVPLAHSYLGAPAQISSDAAK 427 Query: 64 TDV------TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEA 115 + +V N ++ ++K FN++ P R+ T+VLA + + ++ Sbjct: 428 AAIDSLFRGYVVGQNLKYDFEIVKNNFNIE-PPARFADTMVLAWLLDPANAVGMDSISPR 486 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 G E + + + + Y D VT ++ +L Sbjct: 487 Y--------LGYETVHFGD-------VVKKGETFASVELDAATIYASEDAWVTLRLYFKL 531 Query: 176 EPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + L + + G +DV + L + L E+ L Sbjct: 532 KGLLEPALFKLAQELEFPFVRVLWQMQRCGIKIDVEMIKRLIGRNEKSLRALTDEIYELC 591 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + +L LF GL T+ +T + VL L P ++ + R Sbjct: 592 G-EQFNINSPAQLGAVLFERLGLPAAKRTKTGYSTDESVLKDLTALHPAVGKILDYR-EL 649 Query: 284 SRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + L++ +D R+R G + TGR + QN+P Sbjct: 650 FKLQSTYCEPLLQLALADAQNRVRSNFLQTG-TATGRLASKNPNLQNIPARG-------- 700 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + VR C +A G L+ D + IE R+LA + + L A Sbjct: 701 -----------------TFAKNVRDCFLAEGGYSLISLDYSQIELRLLAHFSRDPALLAA 743 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F ED++ T F R I K + L Sbjct: 744 FRADEDIHARTAISIFG----DAQPAHRTIAKSINFGLI--------------------- 778 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + + + + S + E Sbjct: 779 -----------------------YGMGAGKLSDSLGIARAEAKGYIERYFAAFSTIKEFL 815 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + + + GR + + + Sbjct: 816 QSIKSDAK--------------------------ADGYVSTLFGRRRYFDFANARNNMVY 849 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT---KAGYDIVLTVHDEIVCETPD 638 +Y + Q + DI+ + M++ + ++L +HDE++ E D Sbjct: 850 ---------ASYEREAVNTKFQGSAADIIKKAMVDISPLLNGEARLILQIHDELIFEVRD 900 Query: 639 TDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 + +M S S +PLK +KR+ Sbjct: 901 DLAQGFGARAQEIMQSAAS--LNVPLKTSLNIAKRWG 935 >gi|121635640|ref|YP_975885.1| DNA polymerase I [Neisseria meningitidis FAM18] gi|120867346|emb|CAM11117.1| DNA polymerase I [Neisseria meningitidis FAM18] gi|325137472|gb|EGC60058.1| DNA polymerase I [Neisseria meningitidis ES14902] Length = 930 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 111/701 (15%), Positives = 203/701 (28%), Gaps = 155/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 352 NTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK L N + + N +++ V + + ++ + L Sbjct: 402 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 460 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 507 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 508 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 + + + ++L+ LF + G+ + L + +T + VL P Sbjct: 568 QAYA-AADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 684 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 VR A +G +V AD + IE R++A ++ Sbjct: 685 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 719 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F AP V+ +QR K + L Y G + Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 774 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + +E + G R K Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 832 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + R+ + + Sbjct: 833 NANARA---GAERAAINAPMQGTASDLIKRAMIDV-----------------RNCLSDGI 872 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 G+ M +VL E+V Sbjct: 873 GS-----------------------------------KLVM-QVHDE---LVL----EVV 889 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +T+ L +M +PL AE + + Sbjct: 890 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926 >gi|302344141|ref|YP_003808670.1| DNA polymerase I [Desulfarculus baarsii DSM 2075] gi|301640754|gb|ADK86076.1| DNA polymerase I [Desulfarculus baarsii DSM 2075] Length = 890 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 113/701 (16%), Positives = 205/701 (29%), Gaps = 159/701 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52 L ID ET S + ++ F+ HD Sbjct: 315 QLAIDTETTSLDPIR----------ADLVGFSLCVSPGLAYYAPLAHDWPADEPQAPRRQ 364 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSAL 109 +L +AL + + + N ++ VL+ L + T+V L Sbjct: 365 ALDLLGQALADPGLLKIGQNLKYDLNVLRRA-GLSVA-GPLFDTMVADYLLNPAKASHGL 422 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 +A+ G+ +I E + + K + Y D V Sbjct: 423 EAIAAEH--------LGRGVIGFE------EAVGGKGKGFAQAPPERAVPYAAEDADVAL 468 Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L P + E L L + G +D L+ +D + Sbjct: 469 QAAQALGPKLDEADLRRLFDELEMPLTPLLAKMERYGVLIDAEELGRLSAELDQALAAGE 528 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAI 274 Q++ +L + ++L LF E GL T+ +T VL+ P Sbjct: 529 QKIYALAGH-EFNINSTQQLGQVLFDELGLSQVKKTKKRTAYSTDMSVLAILAAQHPLPA 587 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 +V R ++ ++ L +N D GR+ + + TGR S QN+P Sbjct: 588 EVLAYR-ANAKLKSTYVDALPALINPDTGRVHTSFNQCV-TATGRLSSSDPNLQNIPVRG 645 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R C + + G+ LV AD + IE RVLA ++ Sbjct: 646 ELGRR-------------------------MRGCFVPAPGRLLVSADYSQIELRVLAHLS 680 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + L+ G D++ T AR F+V P VT++ R K + + Y A A Sbjct: 681 QDPLMLQDMAEGLDVHTQTAARIFDVMPGLVTREMRVRAKTVNFGVLYGMSAFRL---AR 737 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ ++ F + + +G R+ Sbjct: 738 EQGVS--RAEAEDIIARYLGRYQGVARFQQQNLSQCRQRGYVTTILGR---------RRF 786 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + N + + E + ++ + + + +L Y D Sbjct: 787 LPAI----NSSDRQAREAAERVALNTPIQGSAADIIKLAMLRVDEMLT------RHYPD- 835 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 ++L VHDE+V Sbjct: 836 ------------------------------------------------SPMILQVHDELV 847 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 ETP+ + + M + LK + + + Sbjct: 848 FETPEGGVEQFAQAVRRCMEDVLK--LDVELKVDVGWGRDW 886 >gi|58040155|ref|YP_192119.1| DNA polymerase I [Gluconobacter oxydans 621H] gi|58002569|gb|AAW61463.1| DNA polymerase I [Gluconobacter oxydans 621H] Length = 944 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 106/708 (14%), Positives = 195/708 (27%), Gaps = 164/708 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------DP- 51 +D ET S A ++ + +H Sbjct: 358 AVDTETDSLN----------ARQANMVGLSLSVAPGKACYVPFLHETIRDLLEEDSTGEA 407 Query: 52 --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 + LK L++ V V N+ ++ TV + I T++++ + Sbjct: 408 FVRQLDRTEALERLKPLLQDASVLKVFQNAKYDLTVF-RGAGIP-EITPIDDTMLISYAQ 465 Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + E + G + + P + A Y Sbjct: 466 SAGEHGQGMDELSE--------LHLGHTPVTYDS----VTGTGRKRIPFAQVAIEAATAY 513 Query: 161 CKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 D VT +++ L P E+ L + + D G VD ++ Sbjct: 514 AAEDADVTLRLWQVLRPQLRTRQALALYEEIERPLIQILTDMEDVGIKVDATELRRMSAD 573 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266 ++QE+ + ++L LF E GL T++ T VL S Sbjct: 574 FAERMGTIEQEIHEQVG-RSFNVGSPKQLGEILFDEMGLPGGKRTKSGSWGTDSGVLESL 632 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + + Q + ++ + LV+ M+ D + T + + TGR S Sbjct: 633 AEQGHELPQKILAWRQLAKLKSTYADALVQQMDQDTQRVHTSFQMAITTTGRLSSNEPNL 692 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P + +R +A+ G L+ AD + IE Sbjct: 693 QNIPIRTEEG-------------------------ARIRKAFVATPGCVLLSADYSQIEL 727 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA +A + L+AF G+D++ T + F + + R K + + Y A Sbjct: 728 RLLAHVAKIEPLLEAFRLGQDIHARTASEVFGIPLEGMDPLTRRRAKAINFGIIYGISA- 786 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 L ++ ++ + + +E +H G C Sbjct: 787 ----FGLAQQLQISPGEARSYIDAYFARYPGIRAYMERTKEEAKKHGYVTTPFGRRC--Y 840 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 +K+ + G A KR V L R Sbjct: 841 VPGITEKNGARRAY---AERQAINAPLQGGAADIIKRAMVHLA----------------R 881 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 L + M+ L Sbjct: 882 RLPATGLKAK-------------------------------------MV----------L 894 Query: 627 TVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 VHDE++ E + D + M + L+ E + Sbjct: 895 QVHDELLFEVEEQDAKALADFVRTEMEGAAK--LDVALEVETGIGPSW 940 >gi|325199072|gb|ADY94528.1| DNA polymerase I [Neisseria meningitidis G2136] Length = 930 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 111/701 (15%), Positives = 203/701 (28%), Gaps = 155/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK L N + + N +++ V + + ++ + L Sbjct: 402 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 460 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 507 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 508 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 + + + ++L+ LF + G+ + L + +T + VL P Sbjct: 568 QAYA-AADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 684 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 VR A +G +V AD + IE R++A ++ Sbjct: 685 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 719 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F AP V+ +QR K + L Y G + Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 774 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + +E + G R K Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 832 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + R+ + + Sbjct: 833 NANARA---GAERAAINAPMQGTASDLIKRAMIDV-----------------RNCLSDGI 872 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 G+ M +VL E+V Sbjct: 873 GS-----------------------------------KLVM-QVHDE---LVL----EVV 889 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +T+ L +M +PL AE + + Sbjct: 890 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926 >gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489] gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489] Length = 929 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 109/709 (15%), Positives = 212/709 (29%), Gaps = 167/709 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV-----------HD 50 + D ET S + ++ F+ + + Sbjct: 349 KIVAFDTETDSLN----------THEANLVGFSLSVEKGKGIYVPVILSGGMFAPETISK 398 Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH-RWICTLVLARSNGL---- 105 VL++ ++T+V HN F+ VL + + T++ A Sbjct: 399 KDCLAVLEKLFAEKELTLVMHNGKFDLEVLA-ANGMSAKTECKIFDTMIAAWLLNPAASG 457 Query: 106 --PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 P +L+ + E KG + + +N+ +Y Sbjct: 458 KSPYSLEFLAE---------------TKLGLKGIEFKDIVQKNQTFADVPLEKAFKYGAE 502 Query: 164 DVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 D T +++ L+ E ++ + ++ +G +D + + V Sbjct: 503 DSDFTLQLYYLLKDEIKKSNLEKLFYEMEMKVLPILVSMEIQGIHLDKKKLNEYKDELAV 562 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN--KK 268 ++ ++E+ + ++L+ LF + L T+ +T VL Sbjct: 563 LISEKEKEIYKEAGC-EFNIASPKQLQEILFEKRNLPHGKKTKTGYSTDTAVLEELVFST 621 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 P + + R ++ + L + +GR+ + G + TGR S QN Sbjct: 622 NDPLPKMILDYRSY-TKLQSTYVEALPLLADKNGRIHTSFLQTG-TATGRLSSRDPNLQN 679 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +P S +RS A G L+ AD + IE V Sbjct: 680 IPVRDESGRR-------------------------IRSAFTAVPGTVLISADYSQIELVV 714 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++G++ AF G D++ +T A + ++P QV +QR K + + Y A Sbjct: 715 LAHLSGDKNLCSAFINGIDVHKSTAALIYGISPEQVKPEQRRFAKTVNFGVMYGMSAFRL 774 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 LN++ + + D + F + E+ + G Sbjct: 775 ANE-----LNISRTEAKNFIDQYFSTYSDVKKFLDETKRMARENGYVETITGR------- 822 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 R+ + + Q Sbjct: 823 --RRYIPEIKSSSKIVLQGA---------------------------------------- 840 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG--YDIVL 626 R +NT + K VQA K+G ++L Sbjct: 841 -------ERIAINTPIQG---SAADIVKTAMIKVQA-----------ALEKSGTGAKMLL 879 Query: 627 TVHDEIVCETPDTDE-FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 VHDE++ E P+ + S++ M + +PL+ K + Sbjct: 880 QVHDELIFECPEDNAGNAISIIQREMENAVQ--LKIPLRVSVERGKNWG 926 >gi|325204933|gb|ADZ00387.1| DNA polymerase I [Neisseria meningitidis M01-240355] Length = 908 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 111/701 (15%), Positives = 203/701 (28%), Gaps = 155/701 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 T+ ID ET S A + ++ + F H Sbjct: 330 NTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 379 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + LK L N + + N +++ V + + ++ + L Sbjct: 380 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 437 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 438 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 485 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 486 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 545 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 + + + ++L+ LF + G+ + L + +T + VL P Sbjct: 546 QAYA-AADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 604 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E ++ DGR+ T A TGR + QN+P + Sbjct: 605 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 662 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 VR A +G +V AD + IE R++A ++ Sbjct: 663 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 697 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F AP V+ +QR K + L Y G + Sbjct: 698 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 752 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + +E + G R K Sbjct: 753 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 810 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + R+ + + Sbjct: 811 NANARA---GAERAAINAPMQGTASDLIKRAMIDV-----------------RNCLSDGI 850 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 G+ M +VL E+V Sbjct: 851 GS-----------------------------------KLVM-QVHDE---LVL----EVV 867 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +T+ L +M +PL AE + + Sbjct: 868 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 904 >gi|315122837|ref|YP_004063326.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496239|gb|ADR52838.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 727 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 98/720 (13%), Positives = 202/720 (28%), Gaps = 166/720 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--------VELWDCV----- 48 L I E T A + I AF + + D Sbjct: 122 KWLQI-LENTGSASFTIITDTVDAFNSKPIGIAFSILNQEDASLLKIETIVIDLPLIIDS 180 Query: 49 ------------HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 + LK+ EN + + HN +++ VL+ + I + Sbjct: 181 SLEENMSPEKSISTEEILSYLKKIFENEHLLKIGHNIKYDKLVLQRYGII---IRGFEDI 237 Query: 97 LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156 ++++ + K K L + R+ + + Sbjct: 238 MLMSYVLDSGRYSHDIANIAK---------KWLFYDLITRKEMLKTGKRSISIDQISNSR 288 Query: 157 FGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHT 206 EY V +++ L ++ + + + G +D L Sbjct: 289 IQEYVVEKSNVILQLWLLLRAKLIAEKLLHVYERLDKPMIDIVAQMETTGIQIDRQLLAQ 348 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRV 262 ++ + + L++++ +L + ++L LF + T+ T + Sbjct: 349 VSSEISKDLLCLEEKIHNLAG-EKFNISSPKQLGDILFTKLKFPGGTKTKKGQWKTTAQD 407 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L I+ R S+ ++L +N + T L ++ TGR + Sbjct: 408 LEQINCQDNILIEHILEWRRFSKIKSTYADSLPNHINQRTQRVHTFYSLASTMTGRLASL 467 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 QN+P + ++ +R IA KKL+ AD + Sbjct: 468 EPNLQNIPVKTNLGKK-------------------------IRRAFIAPPTKKLISADYS 502 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R+LA +A +AF+ D++ + F V +V+ R K + ++ Y Sbjct: 503 QIELRILAHVAQINPLYQAFKNSLDIHTLVASEIFGVKIEEVSSHMRQHAKTINFSIIYG 562 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 A + + Sbjct: 563 ISPF--------------------------------------------RLANQLKIKRSE 578 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + + + + E + + N + Sbjct: 579 ATDYIQRYFDRFPGIHEYIEKTKNFARK--------------------------NSYVET 612 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--- 619 GR + Y ++ + + + R +Q + DI M+ K Sbjct: 613 IFGRRIYYDEINSPKVSIRNL---NERAAINAP------IQGSAADITRRAMILVHKSIE 663 Query: 620 ---AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L +HDE+V E P+ + + + M + P +PLK + S + Sbjct: 664 CHKLSTKMLLQIHDELVFEAPEEEIEQVTNIITESMENACLPKINLRVPLKVDIKVSDNW 723 >gi|325981763|ref|YP_004294165.1| DNA polymerase I [Nitrosomonas sp. AL212] gi|325531282|gb|ADZ26003.1| DNA polymerase I [Nitrosomonas sp. AL212] Length = 916 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 104/697 (14%), Positives = 195/697 (27%), Gaps = 152/697 (21%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + ID ET S + ++ +F + H +H Sbjct: 341 VSIDSETTSLNPM----------QAKLVGISFCVESHHAAYLPLMHRYPGVPQQLSFDRA 390 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAV 112 + LK LE+ + N +++ V DI ++ TL+ + Sbjct: 391 LKKLKPWLESATKPKLGQNLKYDKHVFANH---DIQLNGIAHDTLLQSYVLESHRPHNMD 447 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 AL+ K + + A +Y D +T + Sbjct: 448 SLALRHLDVKTISYDD----------VTGKGVKRIGFDEVAIDTATQYAAEDADITFRLH 497 Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P E + + I G +D L + + + L+Q+ Sbjct: 498 QALYPDIQSNAQLSHIYREIEMPILSVLFEIERNGVLLDYKLLQKQSHELGEKLHALEQQ 557 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 ++ + ++++ LF + L + T +T + VL P + Sbjct: 558 AYDISGQP-FNLNSPKQIQEILFHQLKLPIVKKTPTGVPSTDEDVLQQLALDYPLPKLLL 616 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 N R S+ + L M+ + T + TGR + QN+P + Sbjct: 617 NYR-SLSKLKSTYTDKLPLMMDRNTGRVHTNYSQAVAVTGRLASSDPNLQNIPVRTSEGR 675 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R IA G +++ AD + IE R++A ++ ++ Sbjct: 676 R-------------------------IREAFIAPAGYRIISADYSQIELRIMAHISQDEG 710 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 LKAF GED++ T A + QV ++QR KV+ L Y + T L Sbjct: 711 LLKAFAAGEDIHSATAAEILGIPLNQVDQEQRRHAKVINFGLIYGMS-----EFGLATQL 765 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A + E++ + +E + +G + + R Sbjct: 766 GIERSAARAYMERYFARYPKVESYMQQTREKARRLGYVETVLGRRLWLPEINNANGNRR- 824 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +A G A K + + L + + Sbjct: 825 ----QGAERAAINAPMQGTAADIIKLAMIAVHSW----------------LHKEKLHSKL 864 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 I+Q +VL E P Sbjct: 865 -----------------------IMQ-------------VHDE---LVL--------EVP 877 Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + L M +PL E + Sbjct: 878 ENEVALIKSSLPKYMGDVLQ--LDVPLVIEIGVGDNW 912 >gi|146337867|ref|YP_001202915.1| DNA polymerase I [Bradyrhizobium sp. ORS278] gi|146190673|emb|CAL74677.1| DNA polymerase I (POL I) [Bradyrhizobium sp. ORS278] Length = 1034 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 99/693 (14%), Positives = 195/693 (28%), Gaps = 166/693 (23%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDP--------------------VMPQVLKEALENTDV 66 + + H LK LE+T + Sbjct: 458 QANLCGLSLALAPGEACYIPLAHRQAGDGGGLFDAGLAPDQIKESEALAALKPVLESTGL 517 Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKM 123 + +N F VL A + + L+++ + L ++ E Sbjct: 518 LKIGYNIKF-LAVLLAQHGITLQ--NVDDILLMSYALDAGRGSHKLDSLAE--------- 565 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 L + A + V +++ L+P + E+ Sbjct: 566 ---HVLAHAIISEGELIGSGKNKLTFEQVAIDRATAHAAEAADVIHRVWRVLKPRLTAER 622 Query: 184 ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L + + RG +D + L+ +++ EL+ L + + Sbjct: 623 MTAVYETLERPLVSVLARMERRGISIDRQVLSRLSGDFAQTAARVEAELQELAGEPI-NV 681 Query: 234 RCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 +++ LF + GL T+ +T +L + + + S+ Sbjct: 682 GSPKQIGDILFGKMGLSGGTRTKTGAWSTSASILDDLAEQGNDFARKILEWRQVSKLKST 741 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L +N T L A+ TGR S QN+P + + Sbjct: 742 YTDALPTYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRK----------- 790 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R IA+ G KLV AD + IE R+LA +A +AF+ G D++ Sbjct: 791 --------------IRRAFIATPGYKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIH 836 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + F V + + R K + G++ Sbjct: 837 AMTASEMFGVPIKDMPSEVRRRAKAINF--------------GIIYGIS----------- 871 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A + K + ++ + +E + Sbjct: 872 -------------------AFGLANQLGIAREEASAYIKRYFERFPGIRAYMDETREF-- 910 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 +NG + GR Y ++ + + + R Sbjct: 911 -CRKNGYVVTL-----------------------FGRKCHYPEIKASNA---SVRAFNER 943 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN 643 Q + DI+ M +A ++L VHDE++ E P+ + Sbjct: 944 AAINARL------QGTAADIIRRAMTRVEEALAQKKLSAQMLLQVHDELIFEVPEDEVAA 997 Query: 644 -ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++ H+M P+ +PL + + + Sbjct: 998 TLPVVQHVMQDAPFPAVLLSVPLHVDARAADNW 1030 >gi|253698996|ref|YP_003020185.1| DNA polymerase I [Geobacter sp. M21] gi|251773846|gb|ACT16427.1| DNA polymerase I [Geobacter sp. M21] Length = 892 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 109/699 (15%), Positives = 188/699 (26%), Gaps = 157/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQVLK- 58 ID ET S + V+ +A H H +P+ L Sbjct: 317 AIDLETTSLNP----------REARVVGYAASCRPHEAWYIPVGHRYLGAPEQLPESLVL 366 Query: 59 ----EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 L++ + N ++ VL ++ W T++ A L A Sbjct: 367 EILGPLLKDPARRKIGQNLKYDYQVL-RIAGFELEGI-WCDTMLAAYLVNPARNSQGLDA 424 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + +I+ G Y D T + Sbjct: 425 LALEY--------LDHRMISY----AEVARSGKCELNFSEVDLDRAGPYSCEDADATYLL 472 Query: 172 FKRLEPL----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P E L + + G +DV L L+ + +L+ + Sbjct: 473 HEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELSTGFGKQLIELEAQ 532 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQV 276 + G + ++L LF GL + T+ +T L + A + Sbjct: 533 IHEHCGGP-FNINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEVARLL 591 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R S+ + L + + GR+ + + TGR S QN+P Sbjct: 592 LQYR-SISKLKSTYTDALPKLVAPATGRVHTSYNQAV-TSTGRLSSSDPNLQNIPIRGEE 649 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA G ++ AD + IE RVLA ++G+ Sbjct: 650 GRG-------------------------IRRAFIAEPGSLMLSADYSQIELRVLAHLSGD 684 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + +AF GED++ T + F + P VT + R KV+ + Y GA + Sbjct: 685 RVLCEAFAAGEDIHRRTASEVFGMFPELVTSEMRRQAKVINFGVIYGQGA-----FSLAK 739 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + +S E A +F +G R Sbjct: 740 ELGVTPKQAKAFIDSYFERHSGARSFLDSCIREAEVCGFVTTIMGR---------RLCIP 790 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + +NG +R V D+ Sbjct: 791 EI-------------ASKNGNVRAFAQRNAVNYPIQGSAA----------------DIIK 821 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 Q R + I+Q ++ E Sbjct: 822 AAMLRVNRRMQEERVAS------RLIMQ-------------VHDE-----------LIFE 851 Query: 636 TPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L M + +PLK + + Sbjct: 852 VPEGERDLMEELVRTEMEAALP--LSVPLKVDLNFGLNW 888 >gi|118474622|ref|YP_891433.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40] gi|118413848|gb|ABK82268.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40] Length = 875 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 98/699 (14%), Positives = 202/699 (28%), Gaps = 169/699 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV------L 57 + D ET S A+ ++ F+F F++ H + + Sbjct: 315 ISFDTETTSTD----------AKIAKIVGFSFCFNEQTSYYVPLAHSYLGVESQISMNSA 364 Query: 58 KEALENTDVTI---VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAV 112 K A+ + + + N ++ ++ F ++ P + T++LA + S+ + + Sbjct: 365 KWAI--SQIYKGFVIGQNLKYDFRIVANNFGIE-PPKNYSDTMILAWLDDPSSSVGMDNL 421 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + L + E + + + + +Y D +T + + Sbjct: 422 AKKL---------------YNYETIKFESVVKKGEDFSSVDLQSASKYASEDAWITLKFY 466 Query: 173 KRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 K + + G +++ L D L E+ Sbjct: 467 KTFTNKLEESMLNIAKNVEFPFILTLFDMESNGIRLNLEKLRALILRNDSALRALTTEIY 526 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280 L + ++L + LF L + T+ +T + VLS L P ++ R Sbjct: 527 ELCEQR-FNINSSKQLGSVLFDYLKLPAKKKTKTGYSTDESVLSELLDLHPSIEKILEYR 585 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + L+ D R F + TGR S QN+P Sbjct: 586 -ELYKLQSTYCEPLLNLAIKDENHRVYTNFIQTGTATGRLSSKNPNLQNIPARGN----- 639 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++ +R+ +G L+ D + IE R+LA + + + Sbjct: 640 --------------------LAKDMRAVFEPKDGYSLISLDYSQIELRLLAHFSCDPALI 679 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ G+D++ T F + RAI K + L Y G+ Sbjct: 680 EAFKNGDDIHARTAISIFG----ESNTQNRAIAKSINFGLIYGMGSNKLSN--------- 726 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 E + + + + S + + Sbjct: 727 -----------------------------------ELSIDKKSAKEYIDRYFKAFSTIKD 751 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + + + GR + D G Sbjct: 752 FLDSIKNRAKN--------------------------DGFVETLIGRKRYF-DFGGATPM 784 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---GYDIVLTVHDEIVCET 636 + + Q + DI+ M+ ++L +HDE++ E Sbjct: 785 Q---------LAMFEREAVNTKFQGSAADIIKIAMIKVKDLLNDDAKMLLQIHDELIFEV 835 Query: 637 PDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674 D + + + LM + A +PL A +K + Sbjct: 836 RDEIAPSFAKNVQELMQTVV--ALNVPLVANWGMAKNWG 872 >gi|189346016|ref|YP_001942545.1| DNA polymerase I [Chlorobium limicola DSM 245] gi|189340163|gb|ACD89566.1| DNA polymerase I [Chlorobium limicola DSM 245] Length = 943 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 103/696 (14%), Positives = 200/696 (28%), Gaps = 155/696 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEA 60 ID ET S + +F + LK Sbjct: 372 AIDTETTSLD----------TFQAELAGISFSLKPKEARFIYFGKGGLDIGNTLERLKPV 421 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 LEN D+ N ++ VLK + + T++ + L + Sbjct: 422 LENPDIRKTGQNLKYDLLVLKNY-GISLTPVA-FDTMLASYVLDPEEKHNLDDLAARHL- 478 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 I E + +Y D + + + E Sbjct: 479 ----------SIRTTTFDELTAGEGKKRTHILDVPSAQLSDYGCQDADIALRLQEVFEAK 528 Query: 179 SSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 ++Q L + + +G +D A +V+ + L +++ + Sbjct: 529 LLEDQRLLHLCRTIEFPLVEVLAGMEYQGISIDTAHLEKTADLVNAQIGDLSRKIHAAAG 588 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L LF GL + T+ +T VL L P + R Sbjct: 589 TP-FNLDSPKQLSGILFNTLGLPTKKTTKTGFSTNVEVLEELAPLHPIIGDLLEYR-SLQ 646 Query: 285 RSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + ++ L + +N GRL + + TGR S QN+P + + +E Sbjct: 647 KLKTTYIDALPKMINPGTGRLHTSFNQHV-TATGRLSSSNPNLQNIPVRTTAGKE----- 700 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R I S ++ AD + IE R+ A ++G++ ++AF Sbjct: 701 --------------------IRRAFIPSNPDNLILSADYSQIELRIAAEISGDEKLIEAF 740 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 ED++ T F + ++T D R K + + Y Q + LN+ Sbjct: 741 RNREDIHRATAKVIF--STDEITSDMRRKAKEVNFGVLYG-----IQPYGLSKRLNIPQS 793 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + ++ + + E Sbjct: 794 EAKAIIETYTTKYPGLFHALLEIIEEGKRKGYVTTL------------------------ 829 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 +RR +P + + + +GR + +NT Sbjct: 830 -----------------LGRRRYIPDLNSRNGN----IQKAAGR-----------AAMNT 857 Query: 583 TTRQLTREYTYGGKLTENIV--QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 + K N+ Q + + ++L VHDE++ ET + Sbjct: 858 PIQG---TAADIIKCAMNLCDRQ------IKK-----NNMNSVMLLQVHDELLFETTAEE 903 Query: 641 EFNASMLYHL-MTSNPSWA--KGLPLKAEGYESKRY 673 + S L M + K +P++ + K + Sbjct: 904 KNRLSKLVETAMIEAAVYCGLKKVPVEVDTGTGKNW 939 >gi|302390192|ref|YP_003826013.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646] gi|302200820|gb|ADL08390.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646] Length = 864 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 96/661 (14%), Positives = 181/661 (27%), Gaps = 146/661 (22%) Query: 27 DVCVILFAFGFDDHPVELWD---CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 D +I F P + LK L + +T + H+ + RTVL Sbjct: 332 DAHLIGIGFSPSRGEGFYVPAEVLEKSPEVKSDLKAVLADPGITKIIHDGKYARTVLAK- 390 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 + + T++ A + G EL G L Sbjct: 391 --IGMDFVYNFDTMLAAYLLDPSKPRYDLESV-----VFDNLGVELKGTEDPGRRVAYL- 442 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 P E+F +E S + + G VD Sbjct: 443 ---IPLKEIMSEKLK------SCAMEELFFGVEMPLSF------VLSDMEMTGIKVDPEK 487 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQ 260 +L++ + +L E+ L + ++L LF + L + ++ T Sbjct: 488 LESLSREFGEKLEELTGEIYRLAGV-EFNINSPKQLGEVLFEKLNLPVIKKKKSGYSTDA 546 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL K P ++ R + + L+ ++ + + TGR S Sbjct: 547 EVLEKLKNAHPVVEKILEYRF-LMKMKSTYADGLLALVDKSTYRIHSNFNQTITATGRIS 605 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVA 379 QN+P + + +R +A L+ Sbjct: 606 STEPNLQNIPVKTDIGRK-------------------------IRGVFVAESPEHVLLSG 640 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA ++G++ ++AF GED++ T + F V P QVT R K + + Sbjct: 641 DYSQIELRVLAHLSGDEGLIEAFIKGEDIHTRTASEVFGVPPEQVTPLLRDRAKAVNFGI 700 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y GL A Sbjct: 701 IYGIS---------DYGL-----------------------------------AQNLGIS 716 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + ++ +V + + + +G Sbjct: 717 TAEAREYIENYLNRYPKVRDY---IRETIRNARMSGYVTTILN----------------- 756 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-- 617 R ++ + R +Q + DI+ M+ Sbjct: 757 ------RRRYIPEINSRN---YNLRSFAERVAMNTP------IQGSAADIIKVAMVKITN 801 Query: 618 ----TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKR 672 +++ VHDE++ + P ++ + M + +PL + E Sbjct: 802 HFREYGLKAKMLIQVHDELIFDVPKSELEVVKNIVKDDMENAIP--LKVPLVVDFKEGYT 859 Query: 673 Y 673 + Sbjct: 860 W 860 >gi|51598799|ref|YP_072987.1| DNA polymerase I [Borrelia garinii PBi] gi|51573370|gb|AAU07395.1| DNA polymerase I [Borrelia garinii PBi] Length = 909 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 96/699 (13%), Positives = 201/699 (28%), Gaps = 159/699 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LK 58 + ID ET S T +I + F + + + Sbjct: 341 NYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIETKGKIYIEKHYII 390 Query: 59 EALEN---TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVG 113 + N ++ I+ N F+ +LK IP + T++ A +L + Sbjct: 391 QKFNNLFKSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLA 448 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 E K K + +++I +N + + Y D +T +F Sbjct: 449 E--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSCEDADITFRLFN 493 Query: 174 RLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 E + + + G +D + + E ++ E+ Sbjct: 494 IFTEKLKEDELYELMHEIEMPFNNVIIEMEENGIYLDKEYLKEYGKELGKELELIENEII 553 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF + L L + + +T +VL S ++ + +R Sbjct: 554 KSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIGNLIKHRR 612 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ + L+E +N T + TGR + QN+P + Sbjct: 613 -IAKLKSTYTDNLIELINYKTNRLHTSFIQTRTATGRITSINPNLQNIPIKDEKGRK--- 668 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R G + AD + IE +LA ++ ++ +KA Sbjct: 669 ----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDETLIKA 706 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE +D+++ T ++ F + + Sbjct: 707 FENNKDIHIETASKLFKIEEKE-------------------------------------- 728 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 K + NF + + A E + ++ + ++ E Sbjct: 729 -----KITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFDSYPKIKEFI 783 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + T R +++ +N Sbjct: 784 INQINFVKNT--------------------------GYSETILKRRRYIKEINSNNYLER 817 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635 + R + +Q + D + M+ K I+L VHDE++ E Sbjct: 818 SA---AERIAI------NSTIQGSAADYMKIAMIKVFNEFKNKKMESKILLQVHDEMLIE 868 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 +P +E + +M ++ LPL+A K + Sbjct: 869 SPIKEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 906 >gi|261378116|ref|ZP_05982689.1| DNA polymerase I [Neisseria cinerea ATCC 14685] gi|269145571|gb|EEZ71989.1| DNA polymerase I [Neisseria cinerea ATCC 14685] Length = 930 Score = 347 bits (891), Expect = 3e-93, Method: Composition-based stats. Identities = 112/701 (15%), Positives = 198/701 (28%), Gaps = 156/701 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52 + ID ET S A + ++ + F H Sbjct: 352 KIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 401 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP--SAL 109 + LK LEN + + N +++ V DI ++ +++ + L Sbjct: 402 VLGRLKPHLENPALKKIGQNLKYDQHVFANY---DIALNGIAGDSMLASYIIESHLGHGL 458 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E G E I E+ + A EY D Sbjct: 459 DELSERW--------LGLETITY----ESLCGKGAKQISFADVAIGQATEYTAQDADFAL 506 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L E + + + G +D A + + E KL+Q Sbjct: 507 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 566 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274 E + + ++L+ LF + G+ + L + +T + VL Sbjct: 567 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYALPK 625 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR ++ + L E + DGR+ T A TGR + QN+P + Sbjct: 626 IILQNR-SLAKLKSTYTDKLPEMIFPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 683 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 VR A +G +V AD + IE R++A ++ Sbjct: 684 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 718 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G + Sbjct: 719 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 773 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + + + + + +E + G R K Sbjct: 774 AKSLGIDNLSAKTFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 831 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ +A G A KR + + R L + Sbjct: 832 NTNARA---GAERAAINAPMQGTASDLIKRAMIDVS----------------RWLDLDGL 872 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 M +VL Sbjct: 873 K-----------------------------------TKLIM-QVHDE---LVL------- 886 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P + L +M +PL AE + Sbjct: 887 -EVPKAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 926 >gi|119953333|ref|YP_945542.1| DNA polymerase I [Borrelia turicatae 91E135] gi|119862104|gb|AAX17872.1| DNA polymerase I [Borrelia turicatae 91E135] Length = 919 Score = 347 bits (891), Expect = 3e-93, Method: Composition-based stats. Identities = 96/700 (13%), Positives = 198/700 (28%), Gaps = 162/700 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------MP 54 + ID ET S + +I + F + + Sbjct: 351 NYVAIDTETTSLN----------VHEAQIIGISVSFKEFESYYIPIETKEKKTIEKAYII 400 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112 Q E ++ N F+ +LK IP + T++ A +L + Sbjct: 401 QKFNEFF-KAQPKLIGQNYKFDYKILKKHEFNVIPP--YFDTMIAAYVIDPNTKVSLDFL 457 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E + + I E + +N + Y D +T +F Sbjct: 458 AEKYLM--------HKNIRY-------EEIVAQNGTLKDIPLEMVSNYAAEDADITFRLF 502 Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 K E + + + G +D +D E ++ E+ Sbjct: 503 KIFTKKLKEDNLENLMTDIEMPFSNVITEMEENGIYLDKDYLRQYGYELDKELKLIENEI 562 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTETTCQRVLSSNKKLTPQAIQVFNNR 280 + ++L T LF L L ++T +VL + K+ ++ R Sbjct: 563 IKSIGI-EFNLNSTKQLHTVLFERLNLVLPQNVKQDSTDIKVLETIKEQHESIPKLIQYR 621 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + L+E +N T + TGR S QN+P + Sbjct: 622 Q-IAKLKNTYTDNLIEFVNEKTNKIHTNFIQTKTATGRISSTSPNLQNIPIKDEKGRK-- 678 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R +G + AD + IE +LA ++ ++ ++ Sbjct: 679 -----------------------IREAFKPEKGNIFISADYSQIELVILAHLSEDESLIE 715 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ +D+++ T ++ F V +VT R I K + ++ Sbjct: 716 AFKNKKDIHIKTASQLFKVDEEKVTSSMRRIAKSIN--------------FGIIYRMSAF 761 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + ++ ++ +S++ Sbjct: 762 RLSKELSIK------------------------------REEAQKFIDSYFNLYSKIKTF 791 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + N R +++ + Sbjct: 792 IQNQIDFVRK--------------------------NGYSETLLKRRRYIKEINSQN--- 822 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 + R + +Q + DI+ M+ I+L VHDE++ Sbjct: 823 YSERSGAERIAI------NSTIQGSASDIMKIAMIKVYNELKSKNLKSKILLQVHDEMLI 876 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+P+ + + + M N ++ +PLK K + Sbjct: 877 ESPEQECEEVNKIIKTMMEN-AYPLKIPLKVNIETGKSWG 915 >gi|294501500|ref|YP_003565200.1| DNA polymerase I [Bacillus megaterium QM B1551] gi|294351437|gb|ADE71766.1| DNA polymerase I [Bacillus megaterium QM B1551] Length = 875 Score = 347 bits (890), Expect = 4e-93, Method: Composition-based stats. Identities = 96/678 (14%), Positives = 190/678 (28%), Gaps = 133/678 (19%) Query: 11 RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTI 68 S L G + ++ F + D K LE+ V Sbjct: 312 TSEAALIVEGYEENYHHNQLLGFGISNKNGH-YFID---KDTALSSSKFKAWLEDGRVKK 367 Query: 69 VAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 N RT++ +I ++ + A + KL + Sbjct: 368 TVFNGK--RTIVSLKWAGHEIKGIE-HDVMIASYILNPAEANDDLATIAKLKGYHQVQSD 424 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187 E + + KG H Y K + ++ E E L Sbjct: 425 EAV--YGKGAKRSIAEAAQLAEHVIRKAAAVAYLKEVLEKELVENEQFELFEKLEMPLAI 482 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + +G +D A + + + + K++ ++ G + ++L LF + Sbjct: 483 VLADMEYQGVKIDRARLDEMGEDLREQLEKIEAKIYE-YAGQEFNINSPKQLGVVLFEKM 541 Query: 248 GLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGR 303 L + T+ +T VL ++ R + + L + ++ SDG+ Sbjct: 542 QLPVIKKTKTGYSTSADVLEQLASTHDIIPEILQYRQ-LGKLQSTYIEGLKKVIHESDGK 600 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + ++TGR S QN+P ++ Sbjct: 601 VHTRFNQ-TLTQTGRLSSVDPNLQNIPIRLEEGKK------------------------- 634 Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + S + AD + IE RVLA +A ++ + AF+ D++ T F+V Sbjct: 635 IRGAFVPSQPDWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHTKTAMDVFHVERE 694 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT + R K + G++ + Sbjct: 695 EVTSNMRRQAKAVNF--------------GIVYGISDYGLSQ------------------ 722 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 A + + + V E + + E G Sbjct: 723 ------------SLGITRKAAATFIERYLKSFPGVQEYMDTI---VRDAKEKGYVTTLLH 767 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 R ++ + R + Sbjct: 768 -----------------------RRRYLPEITSRNF---NLRSFAERTAMNTP------I 795 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655 Q + DI+ + M+ K ++L VHDE++ E P+ + + +M + Sbjct: 796 QGTAADIIKKAMIEMDKRLKDENLQAKLLLQVHDELIFEAPEEEIKILEKIVPEVMENAL 855 Query: 656 SWAKGLPLKAEGYESKRY 673 +PLK + K + Sbjct: 856 E--LEVPLKVDYSYGKTW 871 >gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium] Length = 916 Score = 347 bits (889), Expect = 4e-93, Method: Composition-based stats. Identities = 103/697 (14%), Positives = 202/697 (28%), Gaps = 154/697 (22%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQ 55 D ET S + + ++ + F D HD Sbjct: 343 FDLETTSLDYM----------NAAIVGWVFLVDK-DSFYVPVGHDYLDAPKQLDFDDALL 391 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 LK L++ + V N ++ VL +D+ T+V + +V Sbjct: 392 TLKPILQDESINKVGQNLKYDAHVLANYQ-IDLNGIS-DDTMVKSYVLN------SVATR 443 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + M L + + ++ Y DV VT E+ K L Sbjct: 444 HNMDDLSM---HYLNHQTIHFSDVAGKGKKQITFNQVGLEAAFPYACEDVIVTHELNKVL 500 Query: 176 EPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + + L + + G +D L + V + ++ + Sbjct: 501 DEDIVQYPKLVKLYQVLEMPLIKVLLRMERNGVEIDAGLLNAQQLDVVKQMNEIQSQAFE 560 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL------HLEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++++ LF E GL +T + L P + + Sbjct: 561 LAGDA-FNLESPKQIQQILFSEEGLGLEAKKKTPKGAPSTNEEALKLL--DHPLVDLILS 617 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ L L + ++ + + T + TGR S QN+P + Sbjct: 618 YR-TLTKLNSTYLEALPKQIDLNTKRLHTSYHQAVTATGRLSSSNPNLQNIPIRTE---- 672 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 + +R IA +G ++ AD + IE R++A ++ ++ Sbjct: 673 ---------------------LGARIRGAFIAGKGNVIIAADYSQIELRIMAHISQDKSL 711 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++AF D++ T + FNV +V KD R K + L Y A +N Sbjct: 712 IEAFNNDVDVHSATASMMFNVPIEEVNKDHRRNAKAINFGLIYGMSA-----FGLAKQIN 766 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++ ++ E + N+ ++E + +G Q +++ Sbjct: 767 VSRTEAKQYIDAYFENYPGVLNYMDNIREAAKVQGYVETIMGRRLYLP-----QINAKNK 821 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 L + G + K+ + + D N Sbjct: 822 MLQQHALRTAINAPMQGSSADIIKKAMLDVHEWIGDGN---------------------- 859 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET-P 637 D + M VHDE+V E Sbjct: 860 -----------------------------DEIKMIM------------QVHDELVFEVNA 878 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 + A+ + LM + + +PL + ++ Sbjct: 879 SKADEFANKIQELMANA--YQLDIPLVVDVGIGDSWQ 913 >gi|203287988|ref|YP_002223003.1| DNA polymerase I [Borrelia recurrentis A1] gi|201085208|gb|ACH94782.1| DNA polymerase I [Borrelia recurrentis A1] Length = 922 Score = 347 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 99/699 (14%), Positives = 205/699 (29%), Gaps = 162/699 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------MPQ 55 + ID ET S + +I + F + + Q Sbjct: 355 YIAIDTETTSIN----------VYESNIIGISVSFKEFESYYIPIETKEKNSIGKDYIIQ 404 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVG 113 E N+ ++ N F+ VLK ++ I + T++ A +L + Sbjct: 405 KFNELF-NSQPKLIGQNYKFDYKVLKRH-GFNV-ISAYFDTMIAAYVIDPNTKVSLDFLA 461 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + I E + ++ + Y D +T +F Sbjct: 462 AKYLM--------HKNIKY-------EEIVPQHSTLKDIPLEIASNYAAEDADITFRLFN 506 Query: 174 RLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L E + I + G +D ++ E ++ E+ Sbjct: 507 ILRKKLKEDNLESLMKNIEMPFSNVIIEIEENGIYLDSNYLTQYGHELEQELKTIENEVI 566 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTETTCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L T LF + + + ++T +VL + K ++ N R Sbjct: 567 QSIGI-EFNLNSSKQLHTILFEKLNIIVSKNVKQDSTDIKVLETIKDQHESIEKLINYRQ 625 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ + L+E +N T + TGR S QN+P + + Sbjct: 626 -LAKLKNTYTDNLIEFINEKTNKIHTNFMQTKTATGRISSTAPNLQNIPIKNERGRK--- 681 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R+ ++G + AD + IE +LA ++ ++ ++A Sbjct: 682 ----------------------IRAAFKPTKGNIFISADYSQIELVILAHLSEDESLIEA 719 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F +D+++ T ++ F V A +T R I K + ++ Sbjct: 720 FTHKKDIHIQTASKLFKVDEANITPSMRRIAKSIN--------------FGIIYRMSAFR 765 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + + ++ +S++ Sbjct: 766 LSQELSIK------------------------------RDEAQNFIDSYFNLYSKIKTFI 795 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 +Q N R R++ + Sbjct: 796 QNQIDFVKQ--------------------------NGYSETLLKRRRYIREINSQNYLER 829 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635 T R +I+Q + DI+ M+ I+L VHDE++ E Sbjct: 830 T---GAERMAI------NSIIQGSASDIMKIAMIKVYNEFKNNNLKSKILLQVHDEMLIE 880 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 +P+ + A ++ M N ++ +PLK K + Sbjct: 881 SPEEECEKAQIIIKEMMEN-AYPLKIPLKTNIETGKSWG 918 >gi|194335777|ref|YP_002017571.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1] gi|194308254|gb|ACF42954.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1] Length = 944 Score = 347 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 107/697 (15%), Positives = 194/697 (27%), Gaps = 152/697 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----DPVMPQVL 57 + +D ET S + + + + ++L Sbjct: 371 RHIAVDTETTSLD----------TFEAELAGISIAVETGKARFISFAQSALDRDKTVEIL 420 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K LEN + + N ++ VLK +++ T++ + L + Sbjct: 421 KPLLENPSLPKIGQNLKYDMLVLKKY-GIELSPVA-FDTMLASYVLNPEEKHNLDDLAA- 477 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + EL+ + +Y D + ++ Sbjct: 478 -HHLGYRTTTFDELV----------GTGKTKQHIFEVDPEKLSDYACQDADLALQLEGVF 526 Query: 176 EPLSSKEQELWY-----------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E EL + + + G C+D ++ V E L + + + Sbjct: 527 RKKLDGETELLWLCENIEFPLVTVLAEMEYAGICIDTHHLEKASERVKKELELLTETIYA 586 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L LF L + T+ +T VL L P A + R Sbjct: 587 AAGSA-FNIDSPKQLAHILFDLLALPPKKRTKTGYSTNVEVLEELATLFPIARDLLEYR- 644 Query: 282 RASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N GRL T + TGR S QN+P S +E Sbjct: 645 SLQKLKSTYIDALPKMVNPLTGRLHTTFNQFI-TATGRLSSSNPNLQNIPIRSPLGKE-- 701 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I S L+ AD + IE R+ A ++G+ L Sbjct: 702 -----------------------IRRAFIPSTPENWLLSADYSQIELRIAAEISGDPQLL 738 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF ED++ T F+ ++T D R K + + Y + LN+ Sbjct: 739 EAFRNREDIHTATAKVIFDT--DEITSDMRRKAKEVNFGVLYG-----IMPFGLSRRLNI 791 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 ++ ++ + + E +G R + Sbjct: 792 PQKEAKAIIDTYISKYPGLFKALQEIIVTGREKGYVTTILGRRRYLADLNSRNTN----- 846 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 L +A T G A K + L S R Sbjct: 847 LKKAAERAAMNTPIQGTAADIIKC---------------AMNLCSSRMRHLN-------- 883 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + M +L VHDE++ ET D Sbjct: 884 ------------------------------MKSVM----------LLQVHDELLFETTDA 903 Query: 640 DEFNASMLYHL-MTSNPSWA--KGLPLKAEGYESKRY 673 ++ S L M K +P+ + K + Sbjct: 904 EKEPLSKLVEQAMIDAAIRCGLKNVPVLVDTGIGKNW 940 >gi|329119683|ref|ZP_08248364.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC BAA-1200] gi|327464280|gb|EGF10584.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC BAA-1200] Length = 932 Score = 347 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 106/699 (15%), Positives = 197/699 (28%), Gaps = 154/699 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + ID ET S A + ++ + F+ H Sbjct: 355 IGIDTETTSLD----------AMNAQLVGISIAFEAGEAAYIPLGHSMTAAPQQLDLQDT 404 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKA 111 LK LEN + + N +++ V + + ++ + L Sbjct: 405 LGRLKPHLENGSLKKIGQNLKYDQHVFANY-GIALRGIA-GDAMLASYIVESHLGHGLDE 462 Query: 112 VGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + E L L + E+ + A EY D Sbjct: 463 LSERWLGLPTITY-------------ESLCGKGAKQISFADVAVEQAAEYAAQDADFALR 509 Query: 171 IFKRLEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L + E + + + G +D A + + KL+++ Sbjct: 510 LEAHLRAQMDEKQLEMYLNLELPVAQVLFEMERNGVHIDRAELAAQSSELGAALLKLEEQ 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAIQ 275 T G + ++L+ LF + G+ + L + +T + VL P Sbjct: 570 AFQ-TAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTASGGISTNEAVLEQLAPDYPLPKI 628 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + NR ++ + L E +N T + TGR + QN+P + Sbjct: 629 ILENR-SLAKLKSTYTDKLPEMINPRTGRVHTTYSQAVAITGRLASSNPNLQNIPIRTAE 687 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 VR A G +V AD + IE R++A ++G+ Sbjct: 688 GRR-------------------------VRRAFTAPAGSLIVSADYSQIELRIMAHLSGD 722 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF+ GED++ T A F +AP V+ +QR K + L Y G + Sbjct: 723 KTLMAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMG-----QYGLAK 777 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L ++ + + + + + +E + G R K++ Sbjct: 778 SLGIDNLSAKNFIDRYFARYPGVAEYIQRTKEEAAAQGYVETLFGR--RLYLPDIRAKNA 835 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A KR + + L + + Sbjct: 836 NARA---GAERAAINAPMQGTASDLIKRAMIAVSS----------------RLHSDGLES 876 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 I+Q +VL E+V Sbjct: 877 KL-----------------------IMQ-------------VHDE---LVL----EVV-- 891 Query: 636 TPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + L +M +PL AE + Sbjct: 892 --ENELETVKEMLPQVMAEVAQGRLNVPLLAEVGVGGNW 928 >gi|162456954|ref|YP_001619321.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] gi|161167536|emb|CAN98841.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] Length = 900 Score = 346 bits (888), Expect = 7e-93, Method: Composition-based stats. Identities = 108/676 (15%), Positives = 188/676 (27%), Gaps = 149/676 (22%) Query: 27 DVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFE 76 V A + H + V+ L + ++ V H+ F Sbjct: 341 SAHVCGVALACEPGQAVYVPLGHRYLGAPAQLSMSDIDAVMGPLLADPELPKVGHDVKFC 400 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGKELIARFC 134 +L + + + T++ + L + E E G ++ Sbjct: 401 EVILLRH-RIGL-VGVSFDTMLASYLLDPEGKNQLHELAER--------ELGAKMQTLDE 450 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQE 184 R Y V + RL P E Sbjct: 451 VAPKRRGQAQRALDE--IELGEASSYGAAFADVALSLTDRLRPRLRAEKLEDLLVQIELP 508 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G VD L + E L+Q+ + + + ++L+ LF Sbjct: 509 LSAVLAEMELTGVLVDPQALAQLGAQMTTELAALEQKAREIVGHDI-NLASPKQLEAVLF 567 Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 E L + T+ +T VL + + P V +R ++ ++ L ++ Sbjct: 568 DELKLRSQRKTKTGRSTDADVLEALSEEHPFPGVVLEHR-AIAKLKGTYVDALPRLVHPG 626 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 T + TGR S QN+P + Sbjct: 627 TGRIHTRWGQAVAATGRLSSQDPNLQNIPIRTELGR------------------------ 662 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G +V AD + IE RVLA ++ + + AF TG+D++V T F V Sbjct: 663 -MIRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVLVDAFRTGQDVHVRTAMEIFGVDQ 721 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 A VT + R K + + Y G+ + A + Sbjct: 722 AGVTAEMRRRSKTINFGVIY--------------GMGESALAKRLDI------------- 754 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 R A+ ++ V E + Sbjct: 755 -----------------SRAEAARFIDAYFARYRGVHEFMEGTMAEAK------------ 785 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 R + + + L + S R Q R Sbjct: 786 --RSESVRTLLGRRRLLPDLRSSDRMR---------------RAQAERIAQNTP------ 822 Query: 602 VQAVSRDILAEGMMNATKA---GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSW 657 +Q + D+L M+ + G +VLTVHDE+ E P A + M S Sbjct: 823 IQGTAADLLKLAMVRVPRPVVPGARMVLTVHDELAFEVPAEAVDEAKAKVREAMESVFP- 881 Query: 658 AKGLPLKAEGYESKRY 673 +PL + + Sbjct: 882 -LDVPLVVDVGHGPTW 896 >gi|153951516|ref|YP_001398611.1| DNA polymerase I [Campylobacter jejuni subsp. doylei 269.97] gi|152938962|gb|ABS43703.1| DNA polymerase type I [Campylobacter jejuni subsp. doylei 269.97] Length = 879 Score = 346 bits (888), Expect = 7e-93, Method: Composition-based stats. Identities = 94/699 (13%), Positives = 213/699 (30%), Gaps = 167/699 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------DPVMPQV 56 + D ET ++ ++ F+F ++ H + + Sbjct: 318 IIAFDTETTGLD----------TKEAKIVGFSFCMSENEAFYVPLTHNYLGVSKQISLES 367 Query: 57 LKEALENT-DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG 113 K+A+E + ++ HN ++ +++ F L++P ++ T++LA + + Sbjct: 368 AKKAIELIFNHFVIGHNLKYDFKIIQNNFGLNLP-QKYADTMILAWLKNPSLRVNMDDLA 426 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L+L + + + L+ + + +Y D +T + Sbjct: 427 --LRLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYL 471 Query: 174 RLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E + + + + G +D L + + E L +E+ + Sbjct: 472 YFLKNLEIPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEALMKKFENEIKILSEEIYT 531 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 L + +++ LF + L + +T ++VL + P ++ + R Sbjct: 532 LCEDR-FNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLHALLDKHPVITKILDYR- 589 Query: 282 RASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 ++ L++ + + R+ + G + TGR S QN+P + ++ Sbjct: 590 ELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY 648 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SC +A +G D + IE R+LA + ++ L Sbjct: 649 -------------------------KSCFVAKDGFSFTSLDYSQIELRMLAHFSEDEKLL 683 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF ED++ T F + + R++ K + L Y G Sbjct: 684 NAFTNDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG--------------- 724 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + + + + + + + Sbjct: 725 -----------------------------YKTLSQNLKIEAHLAKSYIEKYFENFTSIKK 755 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + +Q N + SGR + Sbjct: 756 YFETVKNEAKQ--------------------------NGFITTLSGRKRYFDFENAKPMQ 789 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVCET 636 Y + +I+Q + DI+ M+ K ++L +HDE++ E Sbjct: 790 ----------IAMYERESINSILQGSAADIIKLAMLEINKELNEDKKLILQIHDELIFEV 839 Query: 637 PDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 D N +M + + LK +K + Sbjct: 840 KDDLCENFVKKTRDIMENIVK--LKVKLKTSSSIAKNWG 876 >gi|145220238|ref|YP_001130947.1| DNA polymerase I [Prosthecochloris vibrioformis DSM 265] gi|145206402|gb|ABP37445.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265] Length = 940 Score = 346 bits (887), Expect = 7e-93, Method: Composition-based stats. Identities = 110/700 (15%), Positives = 208/700 (29%), Gaps = 154/700 (22%) Query: 1 MA--TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----HDPVMP 54 M + +D ET S L C + + + Sbjct: 364 MKATLVAVDTETTS---LKTC-------EAELAGISLSATPATASFISFARTGLSREKTI 413 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112 ++L+ LEN + N ++ VLK L++ T++ + L + Sbjct: 414 ELLRPLLENPAIAKTGQNLKYDLLVLKNY-GLELSPIS-FDTMLASYLLNPETTHNLDDL 471 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 L R K + R +Y D + + Sbjct: 472 AARH------------LKLRTTKYDELTGTGKTKLHIDDVEPRKLTDYACQDADIALRLT 519 Query: 173 KRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 L+ ++E L + + +G +D ++ V + +L + Sbjct: 520 AILQKELAEEPNLRHIGETLEFPLISVLGAMESQGISIDTRHLAATSESVGTQLLQLKET 579 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278 + S + ++L LF GL + T+ +T VL L P + Sbjct: 580 IHSAAG-ESFNIDSPKQLSRILFEVLGLPTKKTTKTGFSTNVEVLEELAPLHPVVGNLLE 638 Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R + ++ L + +N GR+ + + TGR S QN+P + Sbjct: 639 YR-SLQKIKTTYIDALPKMLNPRTGRVHTSFNQHI-TATGRLSSSNPNLQNIPIRTPLGR 696 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQ 396 E +R I L+ AD + IE R+ A ++G+ Sbjct: 697 E-------------------------IRKAFIPTDPRNLLLSADYSQIELRIAAEISGDG 731 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF ED++ T F+ +T D R K + + Y Q + Sbjct: 732 KLIEAFRNREDIHSATARVIFDTP--DITPDMRRKAKEVNFGVLYG-----IQPFGLSKR 784 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 LN+ ++ ++ ++ E +G R+ Sbjct: 785 LNIPRSEAADIISTYTAKYPGLFEALDTIKTTGREKGFVTTLLGR---------RRYLPN 835 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 +S L +A E+ N P+ D ++L S R Sbjct: 836 LSSRNGNLQKAAERAAMN-----------TPIQGTAADIIKCAMILCSKR---------- 874 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE- 635 + E+ +Q+ M+ L VHDE+V E Sbjct: 875 --------------------MKEHDMQSS--------ML----------LQVHDELVFET 896 Query: 636 TPDTDEFNASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673 TP+ E ++++ M K +P++ + K + Sbjct: 897 TPEEQENLSALVEEAMIEAAGMCGMKTVPVEVDCGTGKNW 936 >gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira hyodysenteriae] Length = 920 Score = 346 bits (887), Expect = 9e-93, Method: Composition-based stats. Identities = 102/703 (14%), Positives = 208/703 (29%), Gaps = 165/703 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----- 56 + IDFET +I +F + D + + Sbjct: 350 KLVCIDFETTGLDTFKDT----------IIGISFAIKSNEAFYLDLSGRTKIGKDKCMNL 399 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG 113 + + LE D+ ++ HN +E ++K I + + T+V A + + Sbjct: 400 VFDTLEKEDIKVIGHNLKYEYKMMK-AIGKSI-GNMYFDTMVAAYLINPTRGRYNMDDLA 457 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A L K + + + EY D VT ++ Sbjct: 458 IAY------------LSYNTIKYSDLTDNAKKTLLDAP--LKDVVEYACEDADVTFRFYE 503 Query: 174 RLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 PL L + + G + L+ K +++ Sbjct: 504 CFAPLLKTHNLEELFFNIEMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIY 563 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280 + + + ++L+ LF + G+ T+ +T + VL+ + A + R Sbjct: 564 AEAG-EEFNLQSPKQLEYILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYR 622 Query: 281 MRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L+ +N GR+ + + TGR S QN+P E Sbjct: 623 -KYAKLKNTYLDVFPTLINEKTGRIHASFNQ-TVTATGRLSSSEPNLQNIPVRGEEGRE- 679 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R+ I +G L+ AD + IE R+LA + + + Sbjct: 680 ------------------------IRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPALV 715 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ +D++ T + ++V+ VT R I K++ Sbjct: 716 EAFKNNDDIHRKTAMKIYSVSKEHVTASMRNIAKIIN----------------------- 752 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 F + + E E K + +SRV Sbjct: 753 ---------------------FSIIYGKTAFGLSKELGIKKKEAEDFIKGYSSTYSRVKP 791 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRS 578 +E+ + + GR + ++ + Sbjct: 792 FCDEVVEEVRN--------------------------KGFVRTMCGRIRDLSKTINSSNA 825 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632 + R ++Q + D++ M+ K IV+ VHDE+ Sbjct: 826 M---ARNEAERMA------LNTLIQGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDEL 876 Query: 633 VCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674 V E + + A + +M + +P+ + ++ + Sbjct: 877 VVEVSEAEADKAMTIMKEIMEHSVK--ANVPIIVDIHKGNSWG 917 >gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563] gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563] Length = 926 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 101/703 (14%), Positives = 208/703 (29%), Gaps = 165/703 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV-----HDPVMPQV 56 + +DFET G+ + + +I +F + D + Sbjct: 356 KLVCVDFETT--------GLDVFKD--TIIGISFAIRSNEAFYLDVSGRTNIDKDKCIDM 405 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG 113 + E L D+ ++ HN +E ++ N + + T+V A + + Sbjct: 406 VFETLAKEDIKVIGHNLKYEYKMM-RAINKSF-GNMYFDTMVAAYLINPTRGRYNMDDLA 463 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A L K + + EY D +T ++ Sbjct: 464 IAY------------LSYNTIKYSDITDNAKKTLL--DVPLKDVVEYACEDADITFRFYE 509 Query: 174 RLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 PL L + + G + L+ K +++ Sbjct: 510 CFAPLLKTHNLEELFFNIEMPLVSVLADMEFDGVYISSEKMKALSDEYSSLLEKTKKKIY 569 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280 + + + ++L+ LF + G+ T+ +T + VL+ + A + R Sbjct: 570 AEAG-EEFNIQSPKQLEYILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYR 628 Query: 281 MRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ L+ +N GR+ + + TGR S QN+P E Sbjct: 629 -KYAKLKNTYLDVFPTLINEKTGRIHASFNQ-TVTATGRLSSSEPNLQNIPVRGEEGRE- 685 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R+ IA +G L+ AD + IE R+LA + + + Sbjct: 686 ------------------------IRNTFIAEKGNLLIAADYSQIELRLLAHFSNDPALV 721 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ +D++ T + ++V+ VT R I K++ Sbjct: 722 EAFKNNDDIHRKTAMKIYSVSKEHVTASMRNIAKIIN----------------------- 758 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 F + + E E K + +SRV Sbjct: 759 ---------------------FSIIYGKTAFGLSKELGIKRKEAEDFIKGYFSTYSRVKP 797 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRS 578 E+ + + GR + ++ + Sbjct: 798 FCEEVVEEVRN--------------------------KGYVRTMCGRIRDLSKTINSSNA 831 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632 + R ++Q + D++ M+ K IV+ VHDE+ Sbjct: 832 M---ARNEAERMA------LNTLIQGSAADMIKVAMVAIHKEFKNHFKTAKIVMQVHDEL 882 Query: 633 VCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674 V E + + A + +M + +P+ + ++ + Sbjct: 883 VVEVSEKEADKAMTIMKEIMEHSVK--TNVPITVDIHKGNSWG 923 >gi|34556857|ref|NP_906672.1| DNA polymerase I [Wolinella succinogenes DSM 1740] gi|34482572|emb|CAE09572.1| DNA POLYMERASE I [Wolinella succinogenes] Length = 898 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 110/704 (15%), Positives = 195/704 (27%), Gaps = 170/704 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56 + D ET S ++ F+F + H + + Sbjct: 330 VVAFDTETDSLE----------TRSAKLVGFSFSLEGEVGYYVPVAHSYLGAGDQVSLEE 379 Query: 57 LKEALENT-DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG 113 + A+E +V HN F+ +L P R +++LA P L Sbjct: 380 ARGAIEKIFSAQVVGHNLKFDLEILHGALGF-YPKGRIGDSMILAWLLDSGAPVGLD--- 435 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 K G E+I E + + + + A EY D T ++ Sbjct: 436 -----FQMKRWFGHEMIPF-------EKMVKKGETFAQVALEEAAEYAGEDALATYRLYF 483 Query: 174 RLEPLSSKE-------------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 RLE K + + +RG VD LN V+V +L Sbjct: 484 RLEEELKKRGCESLLGLAESLEFPFIHTLIEMEERGIRVDTEFFARLNAEVEVRIRELSG 543 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277 E+ + G + ++L LF + L T+ +T ++VLS + P + Sbjct: 544 EVFAHAGG-EFNLNSTQQLGGVLFEKLHLPSGKKTKTGYSTDEKVLSELLGVHPIIEPIL 602 Query: 278 NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R + + L D R T + TGR S QN+P + + Sbjct: 603 EYR-ELFKLKSTYIEPLTRFALQDKNRRIYTSFLHTGTSTGRLSSKNPNLQNIPVKTEAG 661 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + +R IASEG L+ D + IE R+LA + + Sbjct: 662 RK-------------------------IRQGFIASEGNLLISLDYSQIELRLLAHFSQDP 696 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF+ G D++ T + F + K R I K + L Sbjct: 697 ALVAAFKAGADIHYETAKKIFG---EREAKAHRGIAKTINFGLI---------------- 737 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + ++ Sbjct: 738 ----------------------------YGMGSRKLSETLRISPKEAKGYIDSYFASFPT 769 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + + + +RR + + Sbjct: 770 VKSFLKAQEEFALE--HGYTETLLGRRRYFEFQQAPEYQK-------------------- 807 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-----IVLTVHDE 631 Y + I Q + D++ M + ++L VHDE Sbjct: 808 --------------AAYLREAVNCIFQGSAADLIKLAMNEIRRRFAQEESLWLLLQVHDE 853 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++ E P + L +M +PL+ + + Sbjct: 854 LIFEAPKEHAEALARELALVMEGIHP--LRVPLQCGISLGEHWG 895 >gi|294789122|ref|ZP_06754361.1| DNA polymerase I [Simonsiella muelleri ATCC 29453] gi|294482863|gb|EFG30551.1| DNA polymerase I [Simonsiella muelleri ATCC 29453] Length = 926 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 103/697 (14%), Positives = 201/697 (28%), Gaps = 151/697 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMP 54 + +D ET S +T ++ + F H + Sbjct: 352 RQIGLDTETNSLDPMT----------AKLVGISMAFAAGDAVYIPVAHTLAEQLDWQEIS 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112 LK LE+ ++ + N +++ + K +D+ ++ + L + Sbjct: 402 GSLKPFLEDKNLAKIGQNLKYDQHIFKNH-GIDLQGIA-GDAMLASYIVESHLSHNLDDL 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 G E I+ E+ + EY D I Sbjct: 460 AMRW--------LGLETISY----ESLCGKGAKQISFADVNVAQATEYACQDADFALRIE 507 Query: 173 KRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + L E + + + G +D A + + E +L+Q+ Sbjct: 508 QHLRTQMDAQQIEIYENMELPVAQVLFQMERAGVHLDCAELAQQSTELGTELLQLEQQAY 567 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLE------DLTETTCQRVLSSNKKLTPQAIQVF 277 L + ++L+ LF + G+ + +T + VL P + Sbjct: 568 DLAGQP-FNLNSPKQLQEILFNQLGIPTKGVKKTAKGGYSTDESVLEKLADDYPLPKLIL 626 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 NR ++ + L E +N T + TGR + QN+P ++ Sbjct: 627 QNR-SLAKLKSTYTDKLPEMINPQTGRVHTNYAQAVAITGRLASNNPNLQNIPIRTKQGR 685 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 VR A +G +V AD + IE R++A ++G+ Sbjct: 686 R-------------------------VRRAFNAPDGYLIVSADYSQIELRIMAHLSGDAT 720 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 AF+ ED++ T A F VAP ++T +QR K + L Y G + L Sbjct: 721 LQAAFQNNEDVHRRTAAEVFGVAPEKITLEQRRYAKTINFGLIYGMG-----EYGLAKSL 775 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 ++ + + + + + +E+ + + G R Sbjct: 776 GIDNVSAAMFIKRYFARYTGVAEYMQRTKEHAQQFGFVETLFGRKLYLPDIHSNHAMKR- 834 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +A G A K+ + ++ Sbjct: 835 ----AGAERAAINAPMQGTASDLIKKAM---------------------------IDVSK 863 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 +N +R ++Q +VL VH Sbjct: 864 FLMNQKSRL--------------VMQ-------------VHDE---LVLEVH-------- 885 Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++ L +M+ + +PL AE K + Sbjct: 886 ESELDWIQIKLPEIMSQVGAEVLNVPLLAEVGVGKNW 922 >gi|53711382|ref|YP_097374.1| DNA polymerase I [Bacteroides fragilis YCH46] gi|52214247|dbj|BAD46840.1| DNA polymerase I [Bacteroides fragilis YCH46] Length = 935 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 93/694 (13%), Positives = 194/694 (27%), Gaps = 149/694 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58 L +D ET + D ++ +F ++ + + + + Sbjct: 364 ILALDTETTGTDPM----------DAELVGMSFSITENQAFYVPVPAEREEAIKIVREFE 413 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 +N V N ++ VL+ +++ + T+V + + E Sbjct: 414 PVFKNEKSLKVGQNIKYDMLVLQNY-GIEVR-GKLFDTMVAHYVLQPELRHNMDYLAEIY 471 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + +ELI K + + Y D VT ++ LE Sbjct: 472 LH--YQTIHIEELIG---------PKGKGQKNMRDLSPQEVYLYACEDADVTLKLKNILE 520 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + I G +D ++ +++E+ +L Sbjct: 521 QELKKNDAEKLFYEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTL- 579 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF + + T+T T + VL S + ++ R Sbjct: 580 AEGEFNIASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILEYR- 638 Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N GR+ + + TGR S QN+P +E Sbjct: 639 GLKKLLSTYIDALPQLINPKTGRIHTSFNQ-TVTATGRLSSSNPNLQNIPIRDEDGKE-- 695 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I +G AD + IE R++A ++ ++ + Sbjct: 696 -----------------------IRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMID 732 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +G D++ T A+ + V +VT D R K + Y +N++ Sbjct: 733 AFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISV-----FGLAERMNVD 787 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + E + +++ + EH + +R +++ V Sbjct: 788 RKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHR--KRFLPDINSRNAVVRGY 845 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + G A K Sbjct: 846 ---AERNAINAPIQGSAADIIKV------------------------------------- 865 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 R R G K + ++ + P + Sbjct: 866 -AMARIYERFKAEGLKA--------------KMILQVHDE-----------LNFSVPAKE 899 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PLKA+ + Sbjct: 900 KEIVEQVVIEEMEKA--YRMHVPLKADCGWGTNW 931 >gi|255010273|ref|ZP_05282399.1| putative DNA polymerase I [Bacteroides fragilis 3_1_12] Length = 964 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 97/694 (13%), Positives = 194/694 (27%), Gaps = 149/694 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58 L +D ET + D ++ +F ++ + + + Sbjct: 393 ILALDTETTGTDPM----------DAELVGMSFSIAENQAFYIPVPAGREEATKIVREFE 442 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 +N V N ++ VL+ ++I R T+V + + E Sbjct: 443 SVFKNDKSLKVGQNIKYDMLVLQNY-GIEIR-GRLFDTMVAHYVLQPELRHNMDYLAEIY 500 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + +ELI KG K + + Y D VT ++ LE Sbjct: 501 LH--YQTIHIEELIGPRGKG---------QKNMRDLSPKDVYLYACEDADVTLKLKNILE 549 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + I G +D ++ +++E+ +L Sbjct: 550 QELKKNDAEKLFYEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYNLA 609 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF + + T+T T + VL S + ++ R Sbjct: 610 G-EEFNIASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDVIGKILEYR- 667 Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N GR+ + + TGR S QN+P +E Sbjct: 668 GLKKLLSTYIDALPQLINPRTGRIHTSFNQ-TVTATGRLSSSNPNLQNIPIRDEDGKE-- 724 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I +G AD + IE R++A ++ ++ + Sbjct: 725 -----------------------IRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNMID 761 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +G D++ T A+ + V +VT D R K + Y +N++ Sbjct: 762 AFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISV-----FGLAERMNVD 816 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + E + + + + EH + +R +++ V Sbjct: 817 RKEAKELIDGYFETYPQVKAYMDKSIQVAREHGYVETIFHR--KRFLPDINSRNAVVRGY 874 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + G A K Sbjct: 875 ---AERNAINAPIQGSAADIIKV------------------------------------- 894 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 R R G K + ++ + P + Sbjct: 895 -AMARIYERFKAEGLKA--------------KMILQVHDE-----------LNFSVPVKE 928 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PLKA+ + Sbjct: 929 KEIVEQVVIEEMEKA--YRMHVPLKADCGWGTNW 960 >gi|154148288|ref|YP_001407237.1| DNA polymerase I [Campylobacter hominis ATCC BAA-381] gi|153804297|gb|ABS51304.1| DNA polymerase I (POL I) [Campylobacter hominis ATCC BAA-381] Length = 875 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 98/702 (13%), Positives = 213/702 (30%), Gaps = 171/702 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---------DPV 52 + D ET S + ++ F+F +D+ H D Sbjct: 313 KEIAFDTETTSVDS----------HNAKIVGFSFCWDEKSSFYVPLAHSYLGAPDMLDKN 362 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110 + + L EA+ + + N ++ +++ F L+ P ++ T++LA ++ + Sbjct: 363 IAKRLIEAIYTKFI--IGQNLKYDFRIVRNNFGLN-PPAKYADTMILAWLMDPDNSVGMD 419 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + + + E + + + + Y D +T + Sbjct: 420 NLAKRY-FDYDTI--------------KFENVVKKGENFSSVDVKNAANYASEDAWITLK 464 Query: 171 IFKRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 +K+ + S E + + + G +D++ + + + L E Sbjct: 465 FYKKFCGILSTELLDLAKNLEFPFIKVLLNMEENGIKMDISSLKEMINEIAEQLKILTNE 524 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278 + L+ + ++L LF GL + T+ +T + LS+ +L ++ Sbjct: 525 IYDLSG-ENFNINSTKQLGEVLFEHLGLPAKKKTKTGYSTNESALSAISELHAVVPKILA 583 Query: 279 NRMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R + L+ N + R+ G + TGR S QN+P Sbjct: 584 YR-ELYKLQSTYTEPLLALALKNDENRIFSNFLQTG-TSTGRLSSKNPNLQNIPAHG--- 638 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 ++ +R+C ++ +G V D + IE R+LA + ++ Sbjct: 639 ----------------------SMAVQMRNCFVSKDGFSFVGLDYSQIELRLLAHFSLDK 676 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF ED++ T F + K++RA+ K + L Sbjct: 677 ELLRAFREDEDIHSRTAISIFGTS----DKEKRAVAKTINFGLI---------------- 716 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + E + + + + + + Sbjct: 717 ----------------------------YGMGASKLSNELGISRSDAKDYIEKYFKAFAS 748 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + L + +NG GR + Sbjct: 749 IKNFMENLKSEAK---KNGYTTTL-----------------------FGRKRYFDFANAT 782 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT---KAGYDIVLTVHDEIV 633 Y + Q + DI+ + M+ + ++L +HDE++ Sbjct: 783 PMQF----------AMYERESVNTKFQGSAADIIKKAMVEISPFLNENTRLLLQIHDELI 832 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E D + + +M + +PLK +KR+ Sbjct: 833 FEVRDDMSESFGKKMQEIMQNVVK--LNVPLKTSLSINKRWG 872 >gi|117926540|ref|YP_867157.1| DNA polymerase I [Magnetococcus sp. MC-1] gi|117610296|gb|ABK45751.1| DNA polymerase I [Magnetococcus sp. MC-1] Length = 911 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 185/701 (26%), Gaps = 158/701 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----------DPVM 53 +D ET ++ + + H + Sbjct: 335 AVDTETTDLHP----------HSAELVGISIAWQPMVAYYIPVGHALDAAPEGQLPRADV 384 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALK 110 LK LE+ ++ N ++ + K + + +++ + L Sbjct: 385 LAALKPLLESPEIGKTGQNIKYDYQIFKRYH-ITMQGIE-RDSMLYSYLLYGANRAHNLD 442 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A+ +EL K E + + L Y D VT + Sbjct: 443 AIAT------------EELGRTTIKFEDVAGKGRKRIRFDQVPLHLAAPYACEDAEVTWQ 490 Query: 171 IFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + P +E + L + + G VD + T++ R +L Sbjct: 491 AAASMAPNLDREPGLKRLYETIERPLIPVLAEMEYAGVLVDRDVLSTMSADFSKRRARLV 550 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQV 276 +E+ L V + ++L LF + G+ T++ T VLS + Q Sbjct: 551 EEIHELAG-EVFNVNSTQQLGHILFEKMGIKGGKRTKSGFSTDVSVLSKLADDGEKIPQQ 609 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 ++ + LV ++ GR+ + + TGR S QN+P + Sbjct: 610 VLAYRSLTKLQSTYTDALVALIHPYTGRVHTSYNQAV-TLTGRLSSSDPNLQNIPIRTEE 668 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R+ IA G L+ AD + IE RVLA M Sbjct: 669 GRA-------------------------IRTAFIAPAGWSLLAADYSQIELRVLAHMGNV 703 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF G D++ T A F V AQVT + R + K + L Y Sbjct: 704 SRLKEAFHAGLDIHAATAAELFGVPLAQVTGEHRRMAKTINFGLVYGMSP-----FGLAK 758 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + + ++ + H + G C R ++ Sbjct: 759 RLGIQNNEARAYMDLYFARYDGVRQHMDATIRDARAHGFVETLGGRRCPI-----RDINA 813 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 L + G A K + L + Sbjct: 814 TQRSLREFAERTAINAPLQGSASDLIKLAMIRLHGALQAGGF------------------ 855 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDEIVC 634 M+ +VL V Sbjct: 856 -----------------------------------KARMVLQVHDE---LVLEV------ 871 Query: 635 ETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 PD + + M + +PL + + + Sbjct: 872 --PDKELAAVKEVVRSCMEGVMT--LSIPLVVDMGVGQNWG 908 >gi|241758960|ref|ZP_04757072.1| DNA polymerase I [Neisseria flavescens SK114] gi|241320781|gb|EER57014.1| DNA polymerase I [Neisseria flavescens SK114] Length = 935 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 108/705 (15%), Positives = 195/705 (27%), Gaps = 157/705 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 + ID ET S A + ++ + F H Sbjct: 351 DKIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQIDLQ 400 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW----ICTLVLARSNGLP- 106 + LK LEN+ + + N +++ V + + ++ + Sbjct: 401 DVLGRLKPHLENSALKKIGQNLKYDQHVFANY-GIALNGIALNGIAGDAMLASYIIESHL 459 Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 L + E G E I E+ + A EY D Sbjct: 460 GHGLDELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDA 507 Query: 166 TVTREIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 + L E + + + G +D A + + E Sbjct: 508 DFALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELM 567 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLT 270 KL+QE + + ++L+ LF + G+ + L + +T + VL Sbjct: 568 KLEQEAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDY 626 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P + NR ++ + L E ++ DGR+ T A TGR + QN+ Sbjct: 627 PLPKIILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNI 684 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P + VR A +G +V AD + IE R++ Sbjct: 685 PIRTAEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIM 719 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G Sbjct: 720 AHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG----- 774 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 + L ++ + + + + + +E + G Sbjct: 775 QYGLAKSLGIDNISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPD 832 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 K++ +A G A KR + + Sbjct: 833 IHNKNANARA---GAERAAINAPMQGTASDLIKRAMIDVSCWLDSDGLK----------- 878 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 M +VL V Sbjct: 879 ----------------------------------------TKLIM-QVHDE---LVLEV- 893 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + L +M +PL AE + Sbjct: 894 -------PEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 931 >gi|38146981|gb|AAR11875.1| DNA polymerase I [Clostridium stercorarium] Length = 898 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 103/671 (15%), Positives = 193/671 (28%), Gaps = 148/671 (22%) Query: 29 CVILFAFGFDDHPVELWDCV---HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + A D V + + ++ LKE +N ++ + HN + Sbjct: 346 RLSGLALCTGD-EVFYIETGTALPENLIATELKELWQNENIHKIGHNIK---EFITWLLK 401 Query: 86 LDIPIHR-WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 D+ ++ + T++ + K L + Sbjct: 402 HDVELNGLYFDTMIAEYLIDSIRN--------GYPIASLSH-KYLNRSVPSLDELLGKGK 452 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTIND 194 K +Y +V +I+ + + + + L + ++ Sbjct: 453 GAKKYSEIPPERLKDYSAYNVKAIFDIWPMQKKVLQENRQEELFNDIELPLITVLASMEY 512 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 G+ VD A H +++ L++ + L + ++L T LF + L + Sbjct: 513 HGFKVDAAKLHEYGEVLLSRIKDLEKVIYMLAG-EEFNINSTKQLGTILFEKLKLPVVKS 571 Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQF 310 T+ +T VL + R ++ L + +N G++ + Sbjct: 572 TKTGYSTDVEVLEELYYKHDIIPCIIEYRQ-LTKLYTTYAEGLEKVINPVTGKIHSSFNQ 630 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 + TGR S QN+P E +R I Sbjct: 631 -TVTATGRISSTEPNLQNIPVRHEMGRE-------------------------IRKAFIP 664 Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 SE V AD + IE RVLA + G++ + AF GED++ T + F+VAP VT + R Sbjct: 665 SSENAVFVDADYSQIELRVLAHITGDEALINAFVKGEDIHTATASLVFDVAPEDVTPELR 724 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y L + + ++ + + + Sbjct: 725 RKAKAVNFGIVYGIS-----DYGLARDLGITRKEAKRYIDDYFAKYPKVKTYVDEIVRVG 779 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 E + +RR +P + Sbjct: 780 QEQGYVETLF-----------------------------------------HRRRYLPEL 798 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 K R +NT +Q + DI Sbjct: 799 ASKNFHQRSF---------------GKRVAMNTP------------------IQGTAADI 825 Query: 610 LAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + M+ KA ++L VHDE+V ET + + L M +P Sbjct: 826 IKIAMVKVYKALKESGLKSRLILQVHDELVIETFEDELETVKELVKKCMEEAVE--LSVP 883 Query: 663 LKAEGYESKRY 673 L + K + Sbjct: 884 LVVDVSIGKNW 894 >gi|60679700|ref|YP_209844.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343] gi|253564511|ref|ZP_04841968.1| DNA polymerase I [Bacteroides sp. 3_2_5] gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343] gi|251948287|gb|EES88569.1| DNA polymerase I [Bacteroides sp. 3_2_5] gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R] Length = 941 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 93/694 (13%), Positives = 194/694 (27%), Gaps = 149/694 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58 L +D ET + D ++ +F ++ + + + + Sbjct: 370 ILALDTETTGTDPM----------DAELVGMSFSITENQAFYVPVPAEREEAIKIVREFE 419 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 +N V N ++ VL+ +++ + T+V + + E Sbjct: 420 PVFKNEKSLKVGQNIKYDMLVLQNY-GIEVR-GKLFDTMVAHYVLQPELRHNMDYLAEIY 477 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + +ELI K + + Y D VT ++ LE Sbjct: 478 LH--YQTIHIEELIG---------PKGKGQKNMRDLSPQEVYLYACEDADVTLKLKNILE 526 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + I G +D ++ +++E+ +L Sbjct: 527 QELKKNDAEKLFYEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTL- 585 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF + + T+T T + VL S + ++ R Sbjct: 586 AEGEFNIASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILEYR- 644 Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N GR+ + + TGR S QN+P +E Sbjct: 645 GLKKLLSTYIDALPQLINPKTGRIHTSFNQ-TVTATGRLSSSNPNLQNIPIRDEDGKE-- 701 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I +G AD + IE R++A ++ ++ + Sbjct: 702 -----------------------IRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMID 738 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +G D++ T A+ + V +VT D R K + Y +N++ Sbjct: 739 AFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISV-----FGLAERMNVD 793 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + E + +++ + EH + +R +++ V Sbjct: 794 RKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHR--KRFLPDINSRNAVVRGY 851 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + G A K Sbjct: 852 ---AERNAINAPIQGSAADIIKV------------------------------------- 871 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 R R G K + ++ + P + Sbjct: 872 -AMARIYERFKAEGLKA--------------KMILQVHDE-----------LNFSVPAKE 905 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PLKA+ + Sbjct: 906 KEIVEQVVIEEMEKA--YRMHVPLKADCGWGTNW 937 >gi|313204661|ref|YP_004043318.1| DNA polymerase i [Paludibacter propionicigenes WB4] gi|312443977|gb|ADQ80333.1| DNA polymerase I [Paludibacter propionicigenes WB4] Length = 949 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 95/693 (13%), Positives = 194/693 (27%), Gaps = 145/693 (20%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 ++ D ET G+ + D ++ +F F + D + + Sbjct: 377 KSVCFDTETT--------GLDMFTSD--LVGMSFCFAEGEAYYVSLPEDKTESKEVLREF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 K EN + + N F+ +L + +++ + T++ L+ Sbjct: 427 KAFFENDRIEKIGQNMKFDLLML-WQYGIELK-GKLFDTMIAHYLVQP---------ELR 475 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + E + +Y D VT + + LE Sbjct: 476 HGMDYLAEIYLNYRTIHFEDLVGAKGKNQADIRTVDINKLCDYAAEDADVTFRLKQILEK 535 Query: 178 LS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E L + T+ G +D + I+ E KL++E+ L Sbjct: 536 ELKADALENLFYEIEMPLMQVLATMEHTGVRIDSEALRQSSVILTDEMLKLEKEIHQLAG 595 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++ LF L + T+ +T + +L + P ++ + R Sbjct: 596 Y-EFNVSSPMQVGEILFDRLKLDDKAKKTKTGQYSTSEDILEKLQSKHPIIGKILDYR-G 653 Query: 283 ASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ L + ++ G++ + A+ TGR S QN+P +E Sbjct: 654 LKKLLSTYIDALPQLISPITGKVHTSYNQTVAA-TGRLSSTNPNLQNIPIRDAQGKE--- 709 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R I AD + IE R++A ++G++ L+A Sbjct: 710 ----------------------IRKAFIPDADCLFFSADYSQIELRIMAHLSGDKNMLEA 747 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F +G D++ T A+ + + +VT D R K + Y + L++ Sbjct: 748 FNSGHDIHTATAAKIYKIPLEEVTSDMRRKAKTANFGIIYGISV-----FGLSDRLSIPR 802 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + D + + + E + +G +R ++S V Sbjct: 803 AEAKELIEGYFATYPDVKKYMDNAIQKAKEMGYVETLLGR--KRFLPDINSQNSIVRGF- 859 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + G A K V + Sbjct: 860 --AERNAINAPIQGTAADIIKIAMVRIQN------------------------------- 886 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 +L +QA M + P + Sbjct: 887 --------------RLENESLQA------KMTM-QVHDE-----------LNFTVPKNEL 914 Query: 642 FNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M + +PL A+ + Sbjct: 915 EALQKAVIEEMENAIK--LQVPLIADCGVGANW 945 >gi|57505393|ref|ZP_00371321.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195] gi|57016218|gb|EAL53004.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195] Length = 879 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 97/699 (13%), Positives = 206/699 (29%), Gaps = 167/699 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-VMPQVL---- 57 + D ET A + ++ F+F ++ H +P + Sbjct: 318 IIAFDTETTGLN----------AREAKIVGFSFCVSENEAFYVPLNHTYLAVPSQISMQT 367 Query: 58 -KEAL-ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG 113 K AL + I+ HN ++ +++ F L P ++ T++LA + + Sbjct: 368 AKRALGQIYSHFIIGHNLKYDFAIIENNFKLT-PPKKYADTMILAWLYNPSLRVNMDDLA 426 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L+L K + ++ + + Y D +T + Sbjct: 427 --LRLFDYKTLHFESVVK-------------KGENFASVELEKACNYAAEDAYITLRFYL 471 Query: 174 RLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + + + G ++ L Q + E L +E+ + Sbjct: 472 YFLKNLEPNLLKLGFESEFNFIEVLRKMEQSGIKLETQKLQNLMQEFEKEIKFLSEEIYT 531 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 L + +++ LF + L T+ +T ++VL + P ++ R Sbjct: 532 LCDDK-FNLNSPKQVGDVLFEKLNLPSAKKTKTGYSTDEKVLENLVDKHPVVSKILAYR- 589 Query: 282 RASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 ++ L++ D R+ + G + TGR S QN+P + ++ Sbjct: 590 ELAKLYSTYCEPLLKLALKDENSRIYSSFLQTG-TATGRLSSKEPNLQNIPAHGQYAKDY 648 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SC IA +G + D + IE R+LA + ++ L Sbjct: 649 -------------------------KSCFIAEDGFSFISLDYSQIELRMLAHFSKDEKLL 683 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ ED++ T F + + R++ K + L Y Sbjct: 684 EAFKNDEDIHARTAIMIFG----ENNYETRSVAKSINFGLIYGM---------------- 723 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + + + + + + Sbjct: 724 ----------------------------GYKTLSQNLKIEASLAKEYIEKYFANFTSIKS 755 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + N + SGR + Sbjct: 756 YFERVKNEAK--------------------------INGYISTLSGRKRYFDFANAKPMQ 789 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVCET 636 + Y + +I+Q + DI+ M+ K A ++L +HDE++ E Sbjct: 790 V----------AMYERESINSILQGSAADIIKLAMLELYKELDADKRLILQIHDELIFEV 839 Query: 637 PDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674 D +M + + LK +K + Sbjct: 840 KDELCEKFEKRARDIMENIVK--LKVNLKTSSSIAKNWG 876 >gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16] gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16] Length = 941 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 93/694 (13%), Positives = 194/694 (27%), Gaps = 149/694 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLK 58 L +D ET + D ++ +F ++ + + + + Sbjct: 370 ILALDTETTGTDPM----------DAELVGMSFSITENQAFYVPVPAERKEAIKIVREFE 419 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 +N V N ++ VL+ +++ + T+V + + E Sbjct: 420 PVFKNEKSLKVGQNIKYDMLVLQNY-GIEVR-GKLFDTMVAHYVLQPELRHNMDYLAEIY 477 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + +ELI K + + Y D VT ++ LE Sbjct: 478 LH--YQTIHIEELIG---------PKGKGQKNMRDLSPQEVYLYACEDADVTLKLKNILE 526 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + I G +D ++ +++E+ +L Sbjct: 527 QELKKNDAEKLFYEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTL- 585 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF + + T+T T + VL S + ++ R Sbjct: 586 AEGEFNIASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILEYR- 644 Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N GR+ + + TGR S QN+P +E Sbjct: 645 GLKKLLSTYIDALPQLINPKTGRIHTSFNQ-TVTATGRLSSSNPNLQNIPIRDEDGKE-- 701 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I +G AD + IE R++A ++ ++ + Sbjct: 702 -----------------------IRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMID 738 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +G D++ T A+ + V +VT D R K + Y +N++ Sbjct: 739 AFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISV-----FGLAERMNVD 793 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + E + +++ + EH + +R +++ V Sbjct: 794 RKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHR--KRFLPDINSRNAVVRGY 851 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + G A K Sbjct: 852 ---AERNAINAPIQGSAADIIKV------------------------------------- 871 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 R R G K + ++ + P + Sbjct: 872 -AMARIYERFKAEGLKA--------------KMILQVHDE-----------LNFSVPAKE 905 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PLKA+ + Sbjct: 906 KEIVEQVVIEEMEKA--YRMHVPLKADCGWGTNW 937 >gi|253995782|ref|YP_003047846.1| DNA polymerase I [Methylotenera mobilis JLW8] gi|253982461|gb|ACT47319.1| DNA polymerase I [Methylotenera mobilis JLW8] Length = 942 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 111/699 (15%), Positives = 195/699 (27%), Gaps = 156/699 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VM 53 + D ET S LT ++ +F HD + Sbjct: 367 ICFDTETTSLDPLT----------AQIVGMSFSVAAGTGAYLPLTHDYFDAPSQLPLAEV 416 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKA 111 K LEN + V N +++ VL + + TL+ + + Sbjct: 417 LAKFKPLLENPTIKKVGQNLKYDKHVLANH-GIALNGIA-HDTLLQSYVLESHRGHGMDE 474 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + G E I+ E + ++ + EY D +T ++ Sbjct: 475 LSARH--------LGIEPISF----EQVAGKGAKQVGFNQVTIEVAAEYAAEDADITLQL 522 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E TI G +D + + + + ++ +L+ Sbjct: 523 HEALSPQVLQDDKLNFIYSQVEMPSMECLFTIERNGVLIDANMLNRQSNEIGMKLMELEA 582 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF + G+ T + T + VL P + Sbjct: 583 KAFELAGQP-FNLGSPKQLQEILFGKLGIKPIKKTPSGAPSTDEDVLQELALDYPLPKVL 641 Query: 277 FNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ + L + +N GR+ A TGR + QN+P + Sbjct: 642 LEYR-GLAKLKSTYTDKLPKMINAHTGRVHTNYNQAVA-ITGRLASSDPNLQNIPVRTAE 699 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R IA G +V AD + IE R++A ++ + Sbjct: 700 GRR-------------------------IREAFIAPPGSHIVSADYSQIELRIMAHLSKD 734 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L+AF ED++ T A F V + V +QR KV+ L Y A Sbjct: 735 AGMLQAFANNEDIHRATAAEIFGVERSAVDNEQRRYAKVINFGLIYGMSA-----FGLAQ 789 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 LN+ A + + + +E E + + G + +S Sbjct: 790 NLNIERSAAQNYIERYFARYPGVRQYMQDTRELAKEKGYVETYFGRRLWVP-----EINS 844 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A K + + KD+ Sbjct: 845 ANGMRRAGAERAAINAPMQGTAADLIKLAMIAVDKWLKDEQLN----------------- 887 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 M +VL V Sbjct: 888 ----------------------------------TKLIM-QVHDE---LVLEV------- 902 Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 D++ L LM S +PL AE + Sbjct: 903 -ADSELELVKQKLPELMQSVAK--LDVPLLAEVGVGSNW 938 >gi|299132621|ref|ZP_07025816.1| DNA polymerase I [Afipia sp. 1NLS2] gi|298592758|gb|EFI52958.1| DNA polymerase I [Afipia sp. 1NLS2] Length = 1008 Score = 344 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 96/714 (13%), Positives = 196/714 (27%), Gaps = 170/714 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51 + ID + S + + A + H Sbjct: 418 HVAIDIKATSIDPM----------QADICGIALALTPNKACYIPLGHKKSGGGEDLFASG 467 Query: 52 ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 VL++ +E+ V + F +L I + +++ + Sbjct: 468 LAEGQIEAAKAFDVLRKLMESEAVLKSGLDIKFISVMLAQH---KITLRTTDDVQLMSYA 524 Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 + E+L K L K + EY Sbjct: 525 LDAGRGAHDI-ESL--------AQKWLAHAAIKHGDVIGSGRNKLSLDQVTIERATEYGA 575 Query: 163 GDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVD 212 + ++ ++ E+ L + + RG +D + L+ Sbjct: 576 ETADIIIRLWLLMKARLISERMNNVYESLERPLIGVLARMERRGIMIDRQVLSRLSGDFA 635 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKK 268 ++L+ E+ + + + ++L +F + GL T+ +T +L + Sbjct: 636 QTASRLEDEIRKIAGEDI-NPGSPKQLGDVIFGKMGLPGGQKTKTGAWSTSASILEDLAE 694 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + + + S+ + L +N + T L A+ TGR S QN Sbjct: 695 EGHVFPRKILDWRQVSKLKSTYTDALPNYVNPQTQRVHTTYALAATTTGRLSSNEPNLQN 754 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +P + + +R IA +G KLV AD + IE R+ Sbjct: 755 IPVRTEDGRK-------------------------IRRAFIAEKGHKLVSADYSQIELRL 789 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF D++ T + F V + + R K + Sbjct: 790 LAEIADIPVLKQAFHDKLDIHAMTASEMFGVPVKDMPAEVRRRAKAINF----------- 838 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 G++ A + K Sbjct: 839 ---GIIYGIS------------------------------AFGLANQLGIPREEAGAYIK 865 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + ++ + + + + + GR Sbjct: 866 KYFERFPGIRAYMDATRDFCRE--------------------------HGYVETLFGRKC 899 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGY 622 Y D+ + + + R Q + DI+ M+ K Sbjct: 900 HYPDIKASNA---SLRAFNERAAINARL------QGTAADIIRRAMIRMEDALAEKKLAA 950 Query: 623 DIVLTVHDEIVCETPDTDE-FNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E PD++ ++ +M + P+ +PL + + + Sbjct: 951 RMLLQVHDELVFEVPDSEVGDTIPVIQEVMENAAFPAARLSVPLHVDARAAHNW 1004 >gi|315638941|ref|ZP_07894112.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21] gi|315480970|gb|EFU71603.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21] Length = 879 Score = 344 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 98/699 (14%), Positives = 207/699 (29%), Gaps = 167/699 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-VMPQVL---- 57 + D ET A + ++ F+F ++ H +P + Sbjct: 318 IIAFDTETTGLN----------AREAKIVGFSFCVSENEAFYVPLNHTYLAVPSQISMQA 367 Query: 58 -KEAL-ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG 113 K AL + I+ HN ++ +++ F L P ++ T++LA + + Sbjct: 368 AKRALGQIYSHFIIGHNLKYDFAIIENNFKLT-PPKKYADTMILAWLYNPSLRVNMDDLA 426 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L+L K + ++ + + Y D +T + Sbjct: 427 --LRLFDYKTLHFESVVK-------------KGENFASVELEKACNYAAEDAYITLRFYL 471 Query: 174 RLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + + + G ++ L Q + E L +E+ + Sbjct: 472 YFLKNLEPNLLKLGFESEFNFIEVLRKMEQNGIKLETQKLQNLMQEFEKEIKLLSEEIYT 531 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 L + +++ LF + L T+ +T ++VL S P ++ R Sbjct: 532 LCDDK-FNLNSPKQVGDVLFEKLKLPSAKKTKTGYSTDEKVLESLIDKHPVVSKILAYR- 589 Query: 282 RASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 ++ L++ D R+ + G + TGR S QN+P + ++ Sbjct: 590 ELAKLYSTYCEPLLKLALKDENSRIYSSFLQTG-TATGRLSSKEPNLQNIPAHGQYAKDY 648 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SC IA +G + D + IE R+LA + ++ L Sbjct: 649 -------------------------KSCFIAEDGFSFISLDYSQIELRMLAHFSEDEKLL 683 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ ED++ T F + + R++ K + L Y Sbjct: 684 EAFKNDEDIHARTAIMIFG----ENNYETRSVAKSINFGLIYGM---------------- 723 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + + + + + + Sbjct: 724 ----------------------------GYKTLSQNLKIEASLAKTYIEKYFANFTSIKS 755 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + ++ + N + SGR + Sbjct: 756 FFEKVKNDAK--------------------------INGFISTLSGRKRYFDFANAKPMQ 789 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVCET 636 + Y + +I+Q + DI+ M+ K A ++L +HDE++ E Sbjct: 790 V----------AMYERESINSILQGSAADIIKLAMLELYKELDADKRLILQIHDELIFEV 839 Query: 637 PDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674 D +M + + LK +K + Sbjct: 840 KDELCEKFEKRARDIMENIVK--LKVNLKTSSSIAKNWG 876 >gi|291485342|dbj|BAI86417.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195] Length = 880 Score = 344 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 95/664 (14%), Positives = 189/664 (28%), Gaps = 128/664 (19%) Query: 22 CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81 Y E+ ++ F+ ++ V +V KE +EN D +S R V+ Sbjct: 329 DNYHEEP-ILGFSI-VNETGAYFIP-KDTAVESEVFKEWVENDDQKKWVFDSK--RAVVA 383 Query: 82 -ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 +++ TL+ A ++ V K + + + KG Sbjct: 384 LRWQGIELKGAE-FDTLLAAYIINPGNSYDDVASVAK--DYGLHIVSSDESVYGKGAKRA 440 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 + H L + + + E +LE E L + + G VD Sbjct: 441 VPSEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKVD 500 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 V + + + + + ++++ + + ++L LF + GL + T+ + Sbjct: 501 VDRLKRMGEELGAKLKEYEEKIHEIAG-EPFNINSPKQLGVILFEKIGLPVVKKTKTGYS 559 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL + R + + L++ D T ++TG Sbjct: 560 TSADVLEKLADKHDIVDYILQYRQ-IGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTG 618 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376 R S QN+P + +R + SE + Sbjct: 619 RLSSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEKDWLI 653 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 AD + IE RVLA ++ ++ ++AF D++ T F+VA +VT R K + Sbjct: 654 FAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVN 713 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ + Sbjct: 714 --------------FGIVYGISDYGLSQ------------------------------NL 729 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + V + ++ + G Sbjct: 730 GITRKEAGAFIDRYLESFQGVKAYM---EDSVQEAKQKGYVTTLMH-------------- 772 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R ++ + R +Q + DI+ + M++ Sbjct: 773 ---------RRRYIPELTSRNF---NIRSFAERTAMNTP------IQGSAADIIKKAMID 814 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 ++L VHDE++ E P + L +M A +PLK + Sbjct: 815 MAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA--LALDVPLKVDFAS 872 Query: 670 SKRY 673 + Sbjct: 873 GPSW 876 >gi|321312443|ref|YP_004204730.1| DNA polymerase I [Bacillus subtilis BSn5] gi|320018717|gb|ADV93703.1| DNA polymerase I [Bacillus subtilis BSn5] Length = 880 Score = 343 bits (880), Expect = 5e-92, Method: Composition-based stats. Identities = 95/664 (14%), Positives = 189/664 (28%), Gaps = 128/664 (19%) Query: 22 CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81 Y E+ ++ F+ ++ V +V KE +EN D +S R V+ Sbjct: 329 DNYHEEP-ILGFSI-VNETGAYFIP-KDIAVESEVFKEWVENDDQKKWVFDSK--RAVVA 383 Query: 82 -ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 +++ TL+ A ++ V K + + + KG Sbjct: 384 LRWQGIELKGAE-FDTLLAAYIINPGNSYDDVASVAK--DYGLHIVSSDESVYGKGAKRA 440 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 + H L + + + E +LE E L + + G VD Sbjct: 441 VPSEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKVD 500 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 V + + + + + ++++ + + ++L LF + GL + T+ + Sbjct: 501 VDRLKRMGEELGTKLKEYEEKIHEIAG-EPFNINSPKQLGVILFEKIGLPVVKKTKTGYS 559 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL + R + + L++ D T ++TG Sbjct: 560 TSADVLEKLADKHDIVDYILQYRQ-IGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTG 618 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376 R S QN+P + +R + SE + Sbjct: 619 RLSSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEKDWLI 653 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 AD + IE RVLA ++ ++ ++AF D++ T F+VA +VT R K + Sbjct: 654 FAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVN 713 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ + Sbjct: 714 --------------FGIVYGISDYGLSQ------------------------------NL 729 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + V + ++ + G Sbjct: 730 GITRKEAGAFIDRYLESFQGVKAYM---EDSVQEAKQKGYVTTLMH-------------- 772 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R ++ + R +Q + DI+ + M++ Sbjct: 773 ---------RRRYIPELTSRNF---NIRSFAERTAMNTP------IQGSAADIIKKAMID 814 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 ++L VHDE++ E P + L +M A +PLK + Sbjct: 815 MAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA--LALDVPLKVDFAS 872 Query: 670 SKRY 673 + Sbjct: 873 GPSW 876 >gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12] gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12] Length = 941 Score = 343 bits (880), Expect = 6e-92, Method: Composition-based stats. Identities = 96/693 (13%), Positives = 191/693 (27%), Gaps = 147/693 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58 L +D ET + D ++ +F ++ + + + Sbjct: 370 ILALDTETTGTDPM----------DAELVGMSFSIAENQAFYIPVPAGREEATKIVREFE 419 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 +N V N ++ VL+ ++I R T+V + + E Sbjct: 420 SVFKNDKSLKVGQNIKYDMLVLQNY-GIEIR-GRLFDTMVAHYVLQPELRHNMDYLAEIY 477 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + +ELI KG K + + Y D VT ++ LE Sbjct: 478 LH--YQTIHIEELIGPRGKG---------QKNMRDLSPKDVYLYACEDADVTLKLKNILE 526 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + I G +D ++ +++E+ +L Sbjct: 527 QELKKNDAEKLFYEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYNLA 586 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF + + T+T T + VL S + ++ R Sbjct: 587 G-EEFNIASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDVIGKILEYR- 644 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ L + +N T + TGR S QN+P +E Sbjct: 645 GLKKLLSTYIDALPQLINPRTGRIHTSFNQTVTATGRLSSSNPNLQNIPIRDEDGKE--- 701 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R I +G AD + IE R++A ++ ++ + A Sbjct: 702 ----------------------IRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNMIDA 739 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F +G D++ T A+ + V +VT D R K + Y +N++ Sbjct: 740 FLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISV-----FGLAERMNVDR 794 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + E + + + + EH + +R +++ V Sbjct: 795 KEAKELIDGYFETYPQVKAYMDKSIQVAREHGYVETIFHR--KRFLPDINSRNAVVRGY- 851 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + G A K Sbjct: 852 --AERNAINAPIQGSAADIIKV-------------------------------------- 871 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 R R G K + ++ + P ++ Sbjct: 872 AMARIYERFKAEGLKA--------------KMILQVHDE-----------LNFSVPVKEK 906 Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + M + +PLKA+ + Sbjct: 907 EIVEQVVIEEMEKA--YRMHVPLKADCGWGTNW 937 >gi|160901568|ref|YP_001567149.1| DNA polymerase I [Petrotoga mobilis SJ95] gi|160359212|gb|ABX30826.1| DNA polymerase I [Petrotoga mobilis SJ95] Length = 896 Score = 343 bits (880), Expect = 6e-92, Method: Composition-based stats. Identities = 103/698 (14%), Positives = 200/698 (28%), Gaps = 163/698 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---VMPQVLKE 59 + D ET S ++ A + + + + + Sbjct: 337 IISFDLETSSLDP----------YQADIVGIALSCKPFEGYFLYLYKEKDRWEITKEIVD 386 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEAL 116 L N V + N ++ TVLK +++ +++ A S + + + Sbjct: 387 LLNNKKV--IGQNLKYDITVLK-VNGIELSKVH-FDSMIAAYLLNPDSRRFNMDDLAKEY 442 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 L + K + + + EY D + +F+ L+ Sbjct: 443 ------------LDYKTIKYKEVMGKDIKLLTLGDIDKKRVVEYAGEDADIAYRLFEVLK 490 Query: 177 P----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P E + + G D+ L + + + + L E++ + Sbjct: 491 PKLEEFELFELFEKIEMSTINVLSEMEMNGVYFDLKELQKLEEEYNKKLSSLMYEMKKIV 550 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 + +++ LF GL + T++ T L + + P ++ R + Sbjct: 551 GYD-FNPNSPKQVGELLFENLGLKGKRKTKSGSYSTDADSLEALRDEHPIIEKLLEYR-K 608 Query: 283 ASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + + + +N GR+ + G + TGR S QNLP E + Sbjct: 609 YQKLLSTYIIAIPKLVNKKTGRVHTSFNQTG-TATGRLSSSEPNLQNLPIREEDGERIRS 667 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + + L+ AD + IE RVLA + ++ + A Sbjct: 668 TVKAQK------------------------DDYVLLSADYSQIELRVLAHLTNDETLINA 703 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F GED++ T A F V V + Sbjct: 704 FNNGEDIHALTAAAIFGVKIDDVDYNM--------------------------------- 730 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 NF + A + + + + +V E Sbjct: 731 -----------RRVGKVVNFSLVYGSSPYGLAENLKIPVEDAKDFMNRYFKTYQKVKEYQ 779 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + + G GR +++ Sbjct: 780 ---ESSLKIATQKGYVETI-----------------------FGRKRFLKNIK------- 806 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVCETPD 638 T +L R +Q + DI+ M+N K ++L VHDE+V E P+ Sbjct: 807 TGKSELKRIVINTP------IQGSAADIMKLAMINLYKKLPKEAKLILQVHDEVVIELPE 860 Query: 639 T-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E M+ M + +PLK + K ++K Sbjct: 861 KIVEETKKMVQDCMENAVK--LNIPLKVDISVGKNWQK 896 >gi|296282016|ref|ZP_06860014.1| DNA polymerase I [Citromicrobium bathyomarinum JL354] Length = 955 Score = 343 bits (879), Expect = 7e-92, Method: Composition-based stats. Identities = 110/709 (15%), Positives = 195/709 (27%), Gaps = 151/709 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------ 49 + +D ET S +D A ++ + + H Sbjct: 357 RLVAVDTET-SALD---------AMQADLVGVSLAIGPNQACYIPLGHFNEGGGGDDMFA 406 Query: 50 -------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 V LK LE+ V V N ++ VL I + T++++ + Sbjct: 407 EKPQQIETEVALAKLKPLLESDAVVKVGQNIKYDLNVLARH---GIAVAPIEDTMIVSFA 463 Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 + +G + + L + + P EY Sbjct: 464 LDAGRSQDGIGGGHGMDEL---AQRHLGHTCLTFKEICGTGKKAIPFGEVPIDRATEYAA 520 Query: 163 GDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D VT ++ L+P ++ L + + G VD L++ Sbjct: 521 EDADVTSRLYTHLKPRLAVEGGTRIYERVDRPLIPVVAGMERHGIKVDRQQLAALSERFA 580 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKK 268 E +L+ E+ + + ++L LF + G +T Q VL Sbjct: 581 RETARLEGEIHEIAGQ-EFTVGSPKQLGDILFDKMGYKGGKKGKSGQYSTDQSVLEKLDA 639 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + ++ + L +A+N T L ++TGR S QN Sbjct: 640 TGAPIATKVLEWRQLAKLKSTYTDALQQAINPKTNRVHTSYSLVGAQTGRLSSTDPNLQN 699 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +P + E +R +A EG L+ AD + IE R+ Sbjct: 700 IPIRTEIGRE-------------------------IRQAFVADEGNVLLAADYSQIELRL 734 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 A MA +AF GED++ T F V +D RA K + A+ Y Sbjct: 735 AAHMADVAPLREAFAAGEDIHARTAQEMFG----SVDRDTRARAKTINFAILYGIS---- 786 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 + L + + + + + E E G Sbjct: 787 -RWGLAGRLGIEADEAQDLIDIYFARFPGIQRYIVNTMETVRECGYSQTLFGRK------ 839 Query: 509 AWRQK-HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 W + +S+ +A G + KR + + L P G Sbjct: 840 TWFPRINSKNQAERQGSERAAVNAPIQGTSADIIKRAMARMGPALAEAG-LKPDAPDGVR 898 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 + ++ Sbjct: 899 M---------------------------------------------LLQVH--------- 904 Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 DE+V E P+ A ++ +M P+ +PL E K + Sbjct: 905 --DELVFEMPEGLVEQAKPVIRSVMADAAGPAVELSVPLGVEIGTGKNW 951 >gi|37702659|gb|AAR00931.1|U86402_1 DNA polymerase I [Bacillus subtilis] Length = 880 Score = 343 bits (879), Expect = 7e-92, Method: Composition-based stats. Identities = 94/664 (14%), Positives = 189/664 (28%), Gaps = 128/664 (19%) Query: 22 CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81 Y E+ ++ F+ ++ V +V KE +EN + +S R V+ Sbjct: 329 DNYHEEP-ILGFSI-VNETGAYFIP-KDIAVESEVFKEWVENDEQKKWVFDSK--RAVVA 383 Query: 82 -ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 +++ TL+ A ++ V K + + + KG Sbjct: 384 LRWQGIELKGAE-FDTLLAAYIINPGNSYDDVASVAK--DYGLHIVSSDESVYGKGAKRA 440 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 + H L + + + E +LE E L + + G VD Sbjct: 441 VPSEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKVD 500 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 V + + + + + ++++ + + ++L LF + GL + T+ + Sbjct: 501 VDRLKRMGEELGAKLKEYEEKIHEIAG-EPFNINSPKQLGVILFEKIGLPVVKKTKTGYS 559 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL + R + + L++ D T ++TG Sbjct: 560 TSADVLEKLADKHDIVDYILQYRQ-IGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTG 618 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376 R S QN+P + +R + SE + Sbjct: 619 RLSSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEKDWLI 653 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 AD + IE RVLA ++ ++ ++AF D++ T F+VA +VT R K + Sbjct: 654 FAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVN 713 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ + Sbjct: 714 --------------FGIVYGISDYGLSQ------------------------------NL 729 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + V + ++ + G Sbjct: 730 GITRKEAGAFIDRYLESFQGVKAYM---EDSVQEAKQKGYVTTLMH-------------- 772 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R ++ + R +Q + DI+ + M++ Sbjct: 773 ---------RRRYIPELTSRNF---NIRSFAERTAMNTP------IQGSAADIIKKAMID 814 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 ++L VHDE++ E P + L +M A +PLK + Sbjct: 815 MAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA--LALDVPLKVDFAS 872 Query: 670 SKRY 673 + Sbjct: 873 GPSW 876 >gi|239828008|ref|YP_002950632.1| DNA polymerase I [Geobacillus sp. WCH70] gi|239808301|gb|ACS25366.1| DNA polymerase I [Geobacillus sp. WCH70] Length = 878 Score = 343 bits (879), Expect = 7e-92, Method: Composition-based stats. Identities = 87/655 (13%), Positives = 192/655 (29%), Gaps = 125/655 (19%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 ++ FA + + + + + LE+ + LK + + Sbjct: 334 ILGFAIA--NEHGNFFIRTDTALSSSLFTQWLEDESKKKSVFDGKRAIVSLKWQ-GIQLR 390 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + L+ + + + V K + E I + KG + + Sbjct: 391 GVQ-FDLLIASYLLNPSQSTEDVASIAKTKQYTDVQSDEAI--YGKGAKQKIPDEPVLAE 447 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 H + D + ++ + E L + + G +DV + + Sbjct: 448 HLVRKAAAIRALEQDFICDLQENEQYSLFTDLELPLSSILAEMEFTGVKIDVKRLKEMGE 507 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266 + + +++QE+ L + ++L LF + L + T+ +T VL Sbjct: 508 ELTEQLKEIEQEIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSAEVLEKL 566 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 ++ + R + + L++ ++ D T+ ++TGR S Sbjct: 567 APQHEIVEKILHYRQ-LGKLQSTYIEGLLKVVHHDTNKVHTIFNQALTQTGRLSSTEPNL 625 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIE 385 QN+P + +R + + AD + IE Sbjct: 626 QNIPIRLEEGRK-------------------------IRQAFVPSEPDWVIFSADYSQIE 660 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RVLA +A ++ + AF D++ T F+V +VT + R K + + Y Sbjct: 661 LRVLAHIANDENLIDAFRHDLDIHTKTAMDIFHVNEDEVTPNMRRQAKAVNFGIVYGIS- 719 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + LN+ E + + + + + + + Sbjct: 720 ----DYGLSQNLNITRKEASEFIKRYFEIFPGVKQYMKDIVQEAKQKGYVTTL------- 768 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 +RR +P + + Sbjct: 769 ----------------------------------LHRRRYLPDITSRNFNLRSF------ 788 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TK 619 R+ +NT +Q + DI+ + M++ Sbjct: 789 ---------AERTAMNTP------------------IQGSAADIIKKAMIDLSNRLKKEN 821 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P + + +M + +PLK + + + Sbjct: 822 MKARMLLQVHDELILEAPKEEVERLQQIVPEVMENAVQ--LRVPLKVDYHFGPTW 874 >gi|148258542|ref|YP_001243127.1| DNA polymerase I [Bradyrhizobium sp. BTAi1] gi|146410715|gb|ABQ39221.1| DNA polymerase I [Bradyrhizobium sp. BTAi1] Length = 1020 Score = 343 bits (879), Expect = 8e-92, Method: Composition-based stats. Identities = 98/693 (14%), Positives = 193/693 (27%), Gaps = 166/693 (23%) Query: 27 DVCVILFAFGFDDHPVELWDCVH--------------------DPVMPQVLKEALENTDV 66 + A + H D LK LE+ + Sbjct: 444 QASLCGIALALAPNDACYIPLAHRQAGDGGGLFDAGLAPDQVKDRDALAALKPVLESAGI 503 Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKM 123 + N F VL A + + +++ + +++ E Sbjct: 504 LKIGFNIKF-VAVLLAQHGITL--ANVDDIQLMSYALDAGRGSQKFESLAE--------- 551 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---- 179 L + A + V +++ L+P Sbjct: 552 ---HVLAHAVLGEGELVGSGKNKLTFEQVAIDRATAHAAEAADVIHRLWRVLKPRLVAER 608 Query: 180 ------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + E+ L + + RG +D + L+ +++ EL+ L + + Sbjct: 609 MTAVYETLERPLVTVLAQMERRGIAIDRQVLSRLSGDFAQTAGRVEAELQELAGEPI-NV 667 Query: 234 RCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 +++ LF + GL T+ +T +L + + + S+ Sbjct: 668 GSPKQIGDILFGKMGLPGGTKTKTGAWSTSASILDDLAEQGNDFARKILEWRQVSKLKST 727 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L +N + T L A+ TGR S QN+P + + Sbjct: 728 YTDALPTYVNPQSQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRK----------- 776 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R IA+ G KLV AD + IE R+LA +A +AF+ G D++ Sbjct: 777 --------------IRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIH 822 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + F V + + R K + G++ Sbjct: 823 AMTASEMFGVPIKDMPSEVRRRAKAINF--------------GIIYGIS----------- 857 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A + K + ++ + +E + Sbjct: 858 -------------------AFGLANQLGIAREEASAYIKRYFERFPGIRAYMDETREF-- 896 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 ++G GR Y ++ + + + R Sbjct: 897 -CRKHGYVTTL-----------------------FGRKCHYPEIKASNA---SVRAFNER 929 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643 Q + DI+ M K ++L VHDE++ E PD + Sbjct: 930 AAINARL------QGTAADIIRRAMTRVEDALAEKKLSAQMLLQVHDELIFEVPDDEVAA 983 Query: 644 -ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++ H+M P+ +PL + + + Sbjct: 984 TLPVVQHVMQDAPFPAVLLSVPLHVDARAADNW 1016 >gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195] gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195] Length = 903 Score = 342 bits (878), Expect = 9e-92, Method: Composition-based stats. Identities = 108/679 (15%), Positives = 204/679 (30%), Gaps = 134/679 (19%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCV------HDPVMPQV----LKEALENTD 65 L G + A D + A + L L + Sbjct: 336 LAVSGTPEEAMDARLTALALSSAAGDACFVPAEFIGSASEGQMFAAEGHSGLAALLGDEK 395 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125 ++ AHN+ + +L + + T++ A G K + + E Sbjct: 396 ISKTAHNAKYLMNLLLSA-GQAVKGLD-FDTMIAAHLLGE----KNLAIKDLVFEHFGIE 449 Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185 ++ + + + + KG + ++ + E L Sbjct: 450 IADIENILTRNGKKASFSEVQLSEAAQLAADYTFRLKGIFAAQLAETRLMDLFARVEMPL 509 Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 + + G +D L + + + KL++++ + + ++L LF Sbjct: 510 LPILLGMERTGIMLDTDLLKAMAEKTGRQIFKLEEDIYARAGH-NFNIGSPQQLGRILFD 568 Query: 246 ETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 E L + T+ +T VL K + R + L+TL +N Sbjct: 569 ELKLPVIKKTKTGYSTGAEVLEELKGKHRIVDLILEYR-MLVKLKSTYLDTLPRMVNPHT 627 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 R T + TGR S QN+P E Sbjct: 628 RRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGRE------------------------ 663 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R IA G L+ D + I+ RVLA ++ + ++AF++ +D++ T AR N+ P+ Sbjct: 664 -IRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQDIHTATAARLLNIPPS 722 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VTK+QR + K + + G++ + Sbjct: 723 KVTKEQRRLAKTVNFGVI--------------YGMSSYGLEQATE--------------- 753 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 ++ KA+ +K+ RV+ ++E+ Q Sbjct: 754 ---------------LSLEEADKFIKAYFEKYPRVAVYFSEIKQQVRT------------ 786 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 + GR ++ + R V Sbjct: 787 --------------QGYVETLLGRRRYIPEINSPN---RILRESAERMAINMP------V 823 Query: 603 QAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNP 655 Q S DI+ M+ K ++L VHDE++ E P T+ +L M+ Sbjct: 824 QGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPKTELGRMSDLLVETMSGAV 883 Query: 656 SWAKGLPLKAEGYESKRYR 674 A +PLK E + Sbjct: 884 --AFEIPLKVELKSGANWG 900 >gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] gi|221310850|ref|ZP_03592697.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] gi|221315176|ref|ZP_03596981.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320093|ref|ZP_03601387.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. JH642] gi|221324375|ref|ZP_03605669.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SMY] gi|6015001|sp|O34996|DPO1_BACSU RecName: Full=DNA polymerase I; Short=POL I gi|2293272|gb|AAC00350.1| DNA-polymerase I [Bacillus subtilis] gi|2635374|emb|CAB14869.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] Length = 880 Score = 342 bits (878), Expect = 9e-92, Method: Composition-based stats. Identities = 94/664 (14%), Positives = 189/664 (28%), Gaps = 128/664 (19%) Query: 22 CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81 Y E+ ++ F+ ++ V +V KE +EN + +S R V+ Sbjct: 329 DNYHEEP-ILGFSI-VNETGAYFIP-KDIAVESEVFKEWVENDEQKKWVFDSK--RAVVA 383 Query: 82 -ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 +++ TL+ A ++ V K + + + KG Sbjct: 384 LRWQGIELKGAE-FDTLLAAYIINPGNSYDDVASVAK--DYGLHIVSSDESVYGKGAKRA 440 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 + H L + + + E +LE E L + + G VD Sbjct: 441 VPSEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKVD 500 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 V + + + + + ++++ + + ++L LF + GL + T+ + Sbjct: 501 VDRLKRMGEELGAKLKEYEEKIHEIAG-EPFNINSPKQLGVILFEKIGLPVVKKTKTGYS 559 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL + R + + L++ D T ++TG Sbjct: 560 TSADVLEKLADKHDIVDYILQYRQ-IGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTG 618 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376 R S QN+P + +R + SE + Sbjct: 619 RLSSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEKDWLI 653 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 AD + IE RVLA ++ ++ ++AF D++ T F+VA +VT R K + Sbjct: 654 FAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVN 713 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ + Sbjct: 714 --------------FGIVYGISDYGLSQ------------------------------NL 729 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + V + ++ + G Sbjct: 730 GITRKEAGAFIDRYLESFQGVKAYM---EDSVQEAKQKGYVTTLMH-------------- 772 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R ++ + R +Q + DI+ + M++ Sbjct: 773 ---------RRRYIPELTSRNF---NIRSFAERTAMNTP------IQGSAADIIKKAMID 814 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 ++L VHDE++ E P + L +M A +PLK + Sbjct: 815 MAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA--LALDVPLKVDFAS 872 Query: 670 SKRY 673 + Sbjct: 873 GPSW 876 >gi|187918411|ref|YP_001883974.1| DNA polymerase I [Borrelia hermsii DAH] gi|119861259|gb|AAX17054.1| DNA polymerase I [Borrelia hermsii DAH] Length = 905 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 96/701 (13%), Positives = 196/701 (27%), Gaps = 166/701 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------MPQ 55 + ID ET S + ++ + F + + Q Sbjct: 338 YVSIDTETTSTN----------VYEAQILGISVSFKEFESYYIPIETKEKKSIEREYITQ 387 Query: 56 VLKEALENTDVTI-VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112 E + N F+ + IP + T++ A +L + Sbjct: 388 KFNEFF--KTKPKLIGQNYKFDYKIFTRHGFNAIPP--YFDTMIAAYVIDPNTKVSLDFL 443 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E + + I + + +N Y D +T +F Sbjct: 444 SEKYLM--------HKNIKY-------QEIVSQNGTLKDIPLETVSNYAAEDADITFRLF 488 Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 K E + + + G +D +Q + E ++ E+ Sbjct: 489 KIFAKKLKEDNLESLMIDVEMPFSNVITEMEENGIYLDKDYLRQYSQELTKELKLIENEI 548 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGL--HLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 + ++L LF E L +T +VL + K ++ R Sbjct: 549 IQSIGIK-FNLNSSKQLYRVLFDELKLVLPPNVKKHSTSIKVLEAIKDQHESIPKIIQYR 607 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + S+ + L++ +N+ T + TGR QN+P + Sbjct: 608 -KISKLKNTYTDNLIKFINAKTNKIHTNFIQAKAATGRILSTAPNLQNIPIKDEKGRK-- 664 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R EG + AD + IE +LA + + ++ Sbjct: 665 -----------------------IREAFKPKEGNLFISADYSQIELVILAHFSEDGALIE 701 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ ED+++ T ++ F V +VT R + K + Sbjct: 702 AFKNKEDIHIKTASQLFKVDTDKVTPSMRRVAKSIN------------------------ 737 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 F + + E ++ ++ +S++ Sbjct: 738 --------------------FGIIYNMSAHGLSQELSIKREEAQKFIDSYFNLYSKIKIF 777 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + +NG + K R +++ + Sbjct: 778 ---IQNRIDFARKNGYSETLLK-----------------------RRRYIKEINSQNHSE 811 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 + R + +Q + DI+ M+ I+L VHDEI+ Sbjct: 812 RS---GAERIAI------NSTIQGSASDIMKIAMVRVYNEFKSKNLKSKILLQVHDEILI 862 Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+P + A ++ +M + + LPL+ K + Sbjct: 863 ESPKQECEEAKTIIKEMMENA--YPLKLPLRINIETGKSWG 901 >gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058] gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058] Length = 949 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 95/692 (13%), Positives = 191/692 (27%), Gaps = 144/692 (20%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEA 60 D ET S + ++ +F + D + + Sbjct: 375 CFDTETTSLD----------TFEAQIVGLSFAVEPQKAYYVALPDDKQKTEEILRRFAPL 424 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA-LK 117 LE+ + N ++ +VL + + R T++ + + E L Sbjct: 425 LEDASIEKTGQNMKYDISVLGNY-GIGV-GGRMFDTMIAHYLLQPELRHNMDYMAEVFLG 482 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + E + + + + + +Y D +T ++ Sbjct: 483 YRTIHFGELFD-------DDKTKKSGKPIEDIRKVELGKLKDYACEDADITLQLKNIFGQ 535 Query: 178 LS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E L + + G +D + + + E K+++++ + Sbjct: 536 KLCESSLKNLFFDIEMPLVPILAKMESNGVLIDDFALASYAETLKRELQKIERDILA-YV 594 Query: 228 GLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 L + +++ LF + T+T T + L + P + +R Sbjct: 595 DLPINISSPKQIGELLFERLRIVEKPTKTKTGQYRTDEETLQKLRNRHPIIKLILEHR-G 653 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + + L + +N T TGR S QN+P E Sbjct: 654 LKKLLSTYVEALPKLINPKTNKIHTSFNQTVVSTGRLSSSNPNLQNIPVRDDYGRE---- 709 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R IA G L+ AD + +E R++A ++G++ L AF Sbjct: 710 ---------------------IRKAFIAEPGCVLLSADYSQVELRIMAHLSGDRNMLSAF 748 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 +G+D++ T AR F V +VT D R K + Y A + L++ Sbjct: 749 ASGQDIHAATAARIFKVPIEEVTSDMRRKAKTANFGIIYGISA-----FGLSERLDIPRK 803 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + E + D + + E + G + +++ V Sbjct: 804 EAAALIDGYFESFPDVKRYMEQAIEEARRNGSVQTLFGR--KLYLPDINSQNAGVRGF-- 859 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + G A K + + + N RS + Sbjct: 860 -AERIAINAPIQGTAADIIKIAMIKVDEAIRH-------------------HNYRSQM-- 897 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 M+ DE+V P + Sbjct: 898 -------------------------------MLQVH-----------DELVFNVPTEEVD 915 Query: 643 NASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + H M + S +PL + + Sbjct: 916 EFRQSVKHAMETAAS--LRVPLIVDIGIGHNW 945 >gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1] gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1] Length = 905 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 106/705 (15%), Positives = 208/705 (29%), Gaps = 169/705 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-VMPQVLKE-- 59 + D ET Y +D ++ F+F F+D H +P + E Sbjct: 336 IVAFDTETTGLD---------YEKD-KLVGFSFSFNDDEAFYVPFAHFYLGVPDQISEKD 385 Query: 60 -ALENTDV---TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 AL + +V HN F+ + N D+ ++ + +++LA SAL + Sbjct: 386 AALAMKKIFNSKVVGHNIKFDLHFVSRFLNDDM-LNIYSDSMILAWLINPESALGLDKLS 444 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 KL M K+ + + + +Y D +T ++F Sbjct: 445 DKLLDHTMLGFKDTVK-------------KGETFASVELEDASKYAAEDAYITLKLFNLF 491 Query: 176 EPLSSKEQELWYLDQT-------------INDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + +D++ + G VD V L + + Sbjct: 492 NEKLKLQDATHLIDESQNVEVPFITTLLGMEKDGIRVDAEFLEVFLVEVKETLLNLTKTI 551 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279 + ++L LF GL + T+ +T + VLSS K + Sbjct: 552 YEQAGT-EFNINSTKQLGVILFEHLGLPVGKKTKTGYSTDENVLSSLKDKHEIISSLLEY 610 Query: 280 RMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R + + L++ + +GR+ + G + TGR S QN+P + Sbjct: 611 R-EIYKLYSTYIEPLLKLSLEDKEGRIHTSFVQTG-TATGRLSSKNPNLQNIPARTSQGL 668 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + +R +A EGKKL+ D + IE R+LA + + Sbjct: 669 K-------------------------IREAFVAPEGKKLIGIDYSQIELRLLAHFSQDAV 703 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + AF +D+++ T F + +RA+ K + L Y Sbjct: 704 LVDAFRANKDIHLQTAIALFG---EEEAPSKRAVAKTVNFGLLY---------------- 744 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + + + + + + V Sbjct: 745 ----------------------------GMGQKKLSETLGITTKEAKEIIEKYFESFPTV 776 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + ++ + ++RR P R Sbjct: 777 KTYFRSIVDNSKEM--GYVETLLKRRRYFDYETAS----------PMFR----------- 813 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631 Y + ++ Q + D++ M K ++L +HDE Sbjct: 814 -------------AAYDRESVNSVFQGSASDLIKLSMNKIATVIKEEKLNAKMLLQIHDE 860 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++ E + +M + +PL+A + K Sbjct: 861 LIFEVDADEAEMLGNRFKEIMENIYE--LNIPLEASMNIGDNWGK 903 >gi|211731861|gb|ACJ10159.1| DNA polymerase [Bacteriophage APSE-3] Length = 502 Score = 342 bits (876), Expect = 2e-91, Method: Composition-based stats. Identities = 196/504 (38%), Positives = 284/504 (56%), Gaps = 19/504 (3%) Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + L + Sbjct: 5 ELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQHI 64 Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 G+ L D+ +T QR ++ + P ++ + R+++ ++ K L++++++DGR Sbjct: 65 ASAFGITLPDMQASTLQRRIND-PDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADGR 123 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIIS 361 LRGT QF GASRTGRW+G VF P NLPRP+ +D I L D +Q+ S Sbjct: 124 LRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTS 183 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YVTTYARS 416 +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+ AF ++ Y YAR+ Sbjct: 184 SALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARA 243 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 FN+ P VTK+QR IGKVMEL LGY GG AF A GL+L+ A N P Sbjct: 244 FNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPGVKR 303 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 +A + + E + + + T C+ +K+ WR H + W ++ A +Q I++ Sbjct: 304 EAMRWYQKSVETDKTYGLSEKIFVT-CDALKRMWRNAHPQTVSFWYDIEDAVKQAIQSPG 362 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR---SYLNT--TTRQLTREY 591 ++ + +++DK L + LPSGRSL Y +Y+ T +R+ R Sbjct: 363 IAFKCRK-----LSVRRDKGWLRICLPSGRSLCYPSARTENGQITYMGTNPYSRKWERLK 417 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM 651 TYGGK+ ENI Q+ +RD+LA M KAGY+IVLTVHDEI+ E PDT +F+A L L+ Sbjct: 418 TYGGKIIENICQSTARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLL 477 Query: 652 TSNPSWAKGLPLKAEGYESKRYRK 675 + N WA LPL A G+E+ RYRK Sbjct: 478 SFNSDWAWDLPLSANGFETYRYRK 501 >gi|255321945|ref|ZP_05363095.1| DNA polymerase I [Campylobacter showae RM3277] gi|255301049|gb|EET80316.1| DNA polymerase I [Campylobacter showae RM3277] Length = 863 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 102/688 (14%), Positives = 192/688 (27%), Gaps = 167/688 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQVLK 58 + D ET ++ ++ F+F F+D H+ + Sbjct: 303 VAFDTETT----------DVDTQNARLVGFSFCFNDEEAYYVPVSHEYLGAPKQASEKFA 352 Query: 59 EALENTDVTI---VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVG 113 + + + N ++ V+K L+ P + T++LA S+ + A+ Sbjct: 353 AW-AISQIYKGCVIGQNLKYDFKVVKRNLGLE-PPVNFKDTMILAWLMDPGSSVGMDALA 410 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + L E + R + A +Y D +T + +K Sbjct: 411 KRL---------------YDYDTIKFEDVVKRGETFASVALENAAKYAAEDAWITLKFYK 455 Query: 174 RLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L E + G ++ L D + L E+ Sbjct: 456 SFLNLLDPELLALADTHEFAFILTLFDMEREGIAINREKMQNLILRNDAKIKALTSEIYE 515 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 LT + +++L + LF L ++ T+ +T + VL+ P ++ R Sbjct: 516 LTG-ENFNINSVKQLGSVLFEHLKLPVKKKTKTGYSTDEAVLAELIDEHPVIEKLLEYR- 573 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + L+ D R F + TGR S QN+P Sbjct: 574 ELYKLQSTYCEPLLNLAKKDANSRIYTNFIQTGTSTGRLSSKNPNLQNIPARGA------ 627 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 ++ VR C A V D + IE R+LA + ++ L+ Sbjct: 628 -------------------LAKDVRGCFEAKSDFSFVGLDYSQIELRLLAHFSRDEALLR 668 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF ED++ T F A RA+ K + L Y G+ Sbjct: 669 AFANDEDIHARTAISIFGSAE----GQNRAVAKSINFGLIYGMGSSKL------------ 712 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A + + + + + + Sbjct: 713 --------------------------------ANQVSITRAEAKEYIERYFKAFPTIKGF 740 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + A + + GR ++ Sbjct: 741 LEGIKTAAKN--------------------------EGFVRTLLGRKRLF---------- 764 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---GYDIVLTVHDEIVCETP 637 + TT + Y + I Q + DI+ M+ ++L +HDE++ E Sbjct: 765 DFTTATPMQTAMYEREAVNTIFQGSAADIIKMAMVKIRPLLSPRARMLLQIHDELIFEVQ 824 Query: 638 DTDEFNA-SMLYHLMTSNPSWAKGLPLK 664 D + +M + + LK Sbjct: 825 DGYAEEFGAAAQKIMQEI--YKLNVLLK 850 >gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 896 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 100/695 (14%), Positives = 200/695 (28%), Gaps = 150/695 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H ++ Sbjct: 322 AFDTETDSLN----------TYEANLVGLSFCAKEGRAYYIPLQHRYLGVPQQLELEIVL 371 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 +LK ++ + VAHN F+ VL + I +++ T+++A Sbjct: 372 DILKPIFVDSQKSKVAHNFKFDEKVLSKY-GVKI-VNQVNDTMIMAYVLKSSGKHDMDSL 429 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + K G E IA T + +Y D +T ++ Sbjct: 430 S------KEHLGIEPIAY----TTLAGTGRNQLTLDQIDIEKVAKYAAEDADITFRLYNH 479 Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223 + ++ L+ L + G +D + ++ +L+ + Sbjct: 480 FLKMLKDDEVLYSLYSNVEMPLTIILNNMERIGVKIDATKLIEQSANLEDSIKELEIKCY 539 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 L + +L+ LF + GL T +T + VL + A + Sbjct: 540 DLAGQ-EFNLSSPVQLREILFDKMGLPPVKKTAKGQASTSEEVLVQLAEEYEIAALIMKY 598 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L + ++ +GR+ + G + TGR S QN+P S + Sbjct: 599 RH-LSKLKNTYTDKLPKMLDVNGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 655 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A + +V AD + IE R++A ++ ++ L Sbjct: 656 ------------------------IRQAFVAEQEFCVVAADYSQIELRIMAHLSKDKNLL 691 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 KAF G D++ T A ++ VT +QR K + L Y A L + Sbjct: 692 KAFNQGLDIHSATAAEVLGISLDMVTSEQRRRAKAINFGLIYGMSA-----FGLAKQLEI 746 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + + +E ++ + +G V + Sbjct: 747 PRGEAQEYIDVYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPDI----SSKNVIQ 802 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 N +A G A K+ + + M + N Sbjct: 803 -RNAAERAAINAPMQGTAADIIKKAMIDVNTMILREYN---------------------- 839 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 D + M +V E Sbjct: 840 ----------------------------DDIKMVM-QVHDE-----------LVFEVRKA 859 Query: 640 DEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + +M ++ +PL+ + + Sbjct: 860 KLNEITTKIKSIMETSVK--LDVPLEVNVDSGESW 892 >gi|332799559|ref|YP_004461058.1| DNA polymerase I [Tepidanaerobacter sp. Re1] gi|332697294|gb|AEE91751.1| DNA polymerase I [Tepidanaerobacter sp. Re1] Length = 864 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 101/705 (14%), Positives = 196/705 (27%), Gaps = 175/705 (24%) Query: 6 IDFETR--------------SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD- 50 D ET + AE ++ ++ D + Sbjct: 295 FDTETTQNIEDNNALQKLVKKINSSKNIAVLVDAEKKDLV--SYATDG---IYISVENKC 349 Query: 51 ----PVMPQV------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 + + LK+ LE+T + + H+ F R VL +D T++ A Sbjct: 350 YFISHKLLKENSSISFLKQILEDTAIYKITHDGKFTRNVL-RQLGIDFRCQ--FDTMLAA 406 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + ME + ++ + K E + Sbjct: 407 YLLESSK------PRYDIPILVMEYLGKTMSDIPSFDEKTSYLFELKKIMDEKIKD---- 456 Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 C D ++F E + + G VD A L++ + L + Sbjct: 457 CLMD-----KLFY------EVEMPFSVVLADMEHAGIKVDFAKLQELSERFGKKLAALTE 505 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277 E+ L + ++L LF + L + T+ +T VL + P ++ Sbjct: 506 EIYDLAGT-EFNINSPKQLGEILFEKLSLPVIKRTKTGYSTDAEVLEKLRPSHPIIEKIL 564 Query: 278 NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R + + L ++ GR+ + + TGR S QN+P + Sbjct: 565 EYRF-LMKMKSTYADGLSALVDKKTGRIYTSFNQ-TVTSTGRISSTEPNLQNIPVKTEEG 622 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395 + +R + G L+ D + IE RVLA M+ + Sbjct: 623 KH-------------------------IRGVFTSDGPGHVLLSGDYSQIELRVLAHMSQD 657 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 ++AF +GED++ T + F V P +VT R K + + Sbjct: 658 PGLIEAFVSGEDIHRRTASEVFGVPPEEVTPLLRDKAKAVNFGII--------------Y 703 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + A+ ++ Sbjct: 704 GISDYGLAQ------------------------------NLGISNQEAKEYIDAYFARYP 733 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + E ++ + + R D+ + Sbjct: 734 GVRDYIRETIRSAK--------------------------ALGYVTTLLNRRRYIPDINS 767 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629 R +Q + DI+ M+ I+L VH Sbjct: 768 RN---YHLRSFAERTA------VNTPIQGSAADIIKIAMVKVHDNLRQNNLKAKILLQVH 818 Query: 630 DEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 DE++ + P+ + + M + +PL + + + Sbjct: 819 DELILDVPEEELTAVKEILKQHMENAIP--LRVPLVVDFKQGYNW 861 >gi|296332103|ref|ZP_06874567.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675502|ref|YP_003867174.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23] gi|296150874|gb|EFG91759.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413746|gb|ADM38865.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23] Length = 880 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 94/654 (14%), Positives = 182/654 (27%), Gaps = 125/654 (19%) Query: 32 LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPI 90 L F + + V +V KE EN + +S R V+ +++ Sbjct: 336 LLGFSIVNETGSYFIPKDIAVESEVFKEWAENDEQKKWLFDSK--RAVVALRWQGIELKG 393 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 TL+ A ++ V K + + + KG + H Sbjct: 394 AE-FDTLLAAYIINPGNSYDDVASVAK--DYGLHIVSSDESVYGKGAKRAVPSEDVLSEH 450 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 L + + + E +LE E L + + G VDV + + Sbjct: 451 LVRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEE 510 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267 + + + ++++ + + ++L LF + GL + T+ +T VL Sbjct: 511 LGAKLKEYEEKIHEIAG-EPFNINSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLA 569 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + R + + L++ D T ++TGR S Q Sbjct: 570 DKHDIVDYILQYRQ-IGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTGRLSSTDPNLQ 628 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEA 386 N+P + +R + SE + AD + IE Sbjct: 629 NIPIRLEEGRK-------------------------IRQAFVPSEKDWLIFAADYSQIEL 663 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA ++ +Q ++AF D++ T F+VA +VT R K + Sbjct: 664 RVLAHISKDQNLIEAFTNDMDIHTKTAMDVFHVAEDEVTSAMRRQAKAVNF--------- 714 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ + Sbjct: 715 -----GIVYGISDYGLSQ------------------------------NLGITRKEAGAF 739 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + + V + + + G R Sbjct: 740 IDQYLESFQGVKAYM---EDSVQDAKQKGYVTTLMH-----------------------R 773 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620 ++ + R +Q + DI+ + M++ Sbjct: 774 RRYIPELTSRNF---NIRSFAERTAMNTP------IQGSAADIIKKAMIDMAAKLKEKQL 824 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P + L +M A +PLK + + Sbjct: 825 KARLLLQVHDELIFEAPQEEIEILEKLVPEVMEHA--LALDVPLKVDFASGPSW 876 >gi|330813285|ref|YP_004357524.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063] gi|327486380|gb|AEA80785.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063] Length = 939 Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 93/699 (13%), Positives = 207/699 (29%), Gaps = 151/699 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------------P 51 ID ET S + ++ + + H Sbjct: 358 AIDTETNSLDTMV----------ANLVGISLSYRPGEAFYIPIGHQNKSDPSIKKQLKLK 407 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111 + V+K LE+ V V N ++ + I ++ T++++ S Sbjct: 408 DVLSVIKPYLEDPTVKKVGQNIKYDYRIFLKH---GIQMNSIEDTMLMSYSLDAGKN--- 461 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + E L + + + +Y D +T + Sbjct: 462 -----RHGMDLLSELH-LNHKTISFKDVAGIGKSQVTFDFVDIEQAKDYACEDADITLRL 515 Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 +K E E + L + ++ + G +D + L++ ++E L+++ Sbjct: 516 YKMFEKRLFNENVLGVYDNLEKPLIKILSSVENNGIKIDKNILEKLSKKFEIEIQNLEKK 575 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 + + + ++L ++ + + T+ T VL + ++ Sbjct: 576 IFKI-AKEEFNIGSPKQLGDVIYEKLKIAGSKKTKKGNFATNVAVLEDLASQGHEFPKLV 634 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 N + S+ +TL +N+ + T L A+ TGR + QN+P + + Sbjct: 635 LNWRQKSKLKNTYTDTLPTYINAKSKRVHTSFLLAATTTGRLASANPNLQNIPIKNIEGK 694 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 E +RS ++ + KL+ AD + IE R+LA M + Sbjct: 695 E-------------------------IRSAFVSDKNSKLISADYSQIEMRILAHMGDVKE 729 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 KAF ED++ T ++ F+V+ +V +D R K + + Y + Sbjct: 730 LKKAFLNKEDIHTLTASQIFDVSLKKVDEDMRRKAKAINFGIIYGIS-----SYGLAKQI 784 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 +++ S ++ + +F ++ C + + + Sbjct: 785 SVSNSEAENFLKSYFGKFPEIRDFMNENITFCRKNGYVKTLFDRKCH-----FPNINDKN 839 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 L +A G A R Sbjct: 840 HTLRTFQERACINAPIQGTAADLL-----------------------------------R 864 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 + +++ +++I A ++ ++ E Sbjct: 865 LAMIQIDKKI-----------------SAKEIPASLLIQVHDE-----------LLLECK 896 Query: 638 DTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 + D + + H M + P +PL + K + Sbjct: 897 EKDVSSVQQKIAHEMENASEPLVKFSIPLTVDVKSGKNW 935 >gi|296132483|ref|YP_003639730.1| DNA polymerase I [Thermincola sp. JR] gi|296031061|gb|ADG81829.1| DNA polymerase I [Thermincola potens JR] Length = 886 Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 93/665 (13%), Positives = 196/665 (29%), Gaps = 151/665 (22%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMP-QVLKEALE---NTDVTIVAHNSYFERT-VLK 81 ++ A+ + + + P L L+ T + H++ RT +L Sbjct: 347 SAGILGLAWSAEPGSGGY--LAGEELQPADKLTRILDTVLWTKGWVCFHDAK--RTDILL 402 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 P+ T++ A + L ++K Q++ G++ + Sbjct: 403 RRLGNK-PVRAGFDTMLAAYLLDPSVSNLDLAALSIKYLGQELSPGED-------YRSFC 454 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 D E D ++ E L ++ + G +D Sbjct: 455 AQADIILRLVPVLHEKLAELNMLD------LYF------DVEMPLLHILADMEFSGVKLD 502 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 ++ + E ++ ++ L + +L T LF + GL + T+ + Sbjct: 503 KEYLEAMSVDLSTEIDRITGDIYRLAG-EEFNINSTRQLGTILFEKLGLPVIKKTKTGYS 561 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRT 316 T VL + + +V + R + ++ L+ +N G++ T + T Sbjct: 562 TDVEVLETLAERHEIVARVLHYRQ-LVKLKSTYVDGLIPLINPVTGKVHTTFNQ-TVTAT 619 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKK 375 GR S QN+P +R + G Sbjct: 620 GRLSSTEPNLQNIPIRMEEGRR-------------------------IRKAFVPSEPGWI 654 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 ++ AD + IE R+LA ++G++ ++AF ED++ T A F V+ +VT + R+ K + Sbjct: 655 ILSADYSQIELRILAHLSGDERFVQAFRNDEDIHTRTAAEVFGVSLEEVTGEMRSRAKAV 714 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + Y ++++ + + + + E Sbjct: 715 NFGIVYGIS-----DFGLAKNISVSRKEARQYIENYFARYAGIKKYLEETVRLAREQGYV 769 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 +RR +P + Sbjct: 770 TTL-----------------------------------------LNRRRYLPDILSPNRN 788 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 R+ +NT +Q + DI+ M+ Sbjct: 789 IRSF---------------GERTAMNT------------------PIQGSAADIIKLAMV 815 Query: 616 NATK------AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 ++L VHDE++ E P + + + M + +PLK + Sbjct: 816 RVADCLKKEGLKARMLLQVHDELIFEAPPEELPKVTGIVRECMENTVK--LTVPLKVDMK 873 Query: 669 ESKRY 673 + + Sbjct: 874 KGFNW 878 >gi|300871901|ref|YP_003786774.1| DNA polymerase I [Brachyspira pilosicoli 95/1000] gi|300689602|gb|ADK32273.1| DNA polymerase I [Brachyspira pilosicoli 95/1000] Length = 931 Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 95/705 (13%), Positives = 211/705 (29%), Gaps = 168/705 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----- 56 + IDFET LT +I +F D + + Sbjct: 360 KLVCIDFETTGLDTLTD----------EIIGISFAIKSKEAFYLDLSGRTNIDKEACKKL 409 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGLP---SALKAV 112 + + L D+ I+ HN +E +++A +D + + T+V A + + Sbjct: 410 VFDTLAKEDIKIIGHNLKYEYKMMRA---IDKKMGNMYFDTMVAAYLINPSRGRYNMDDL 466 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + L K + + EY D +T + Sbjct: 467 ALSY------------LSYNTIKYSDITDNAKKTLL--DVELKDVVEYACEDADITFRFY 512 Query: 173 KRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + PL + L + + G + +L++ K ++ Sbjct: 513 EYFAPLLNTYNLEDLFFNVEMPLISVLADMEFDGVYISTEKMKSLSEEYASLLEKTKAKI 572 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + ++ T+ +T + VL + A + Sbjct: 573 YEKAG-EEFNLQSPKQLEYILFEKLKINSTKKTKTGAYSTDEEVLRELAQREKIAEYMLT 631 Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R + S+ L+ ++ R+ + + TGR S QN+P + Sbjct: 632 YR-KYSKLKNTYLDVFPTLVHKKTNRIHASFNQ-TVTATGRLSSSEPNLQNIPARGDEGK 689 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + +R+ IA +G L+ AD + IE R+LA + + Sbjct: 690 D-------------------------IRNTFIAEKGNVLIAADYSQIELRLLAHFSNDPV 724 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF+ +D++ T + ++V+ VT R K++ ++ Sbjct: 725 LVEAFKNNDDIHRKTAMKIYSVSKEHVTPSMRNTAKIINFSII----------------- 767 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + E + K + +S+V Sbjct: 768 ---------------------------YGKTAFGLSKELNISRKEADDFIKGYFSTYSQV 800 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNN 576 ++ + + + GR + ++ Sbjct: 801 KPFCEKVIEDVK--------------------------AKGYVRTMLGRIRDLSKTINSS 834 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHD 630 + + + R ++Q + D++ M+ K IV+ VHD Sbjct: 835 NAVVRN---EAERMA------LNTLIQGSAADMIKVAMIAIHKEFKNHFKTAKIVMQVHD 885 Query: 631 EIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674 E+V E + + A + +M + +P+ + ++ + Sbjct: 886 ELVVEVSEKESDKAMTIMKEIMEHSVK--TNVPITVDIHKGLSWG 928 >gi|86151514|ref|ZP_01069729.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94] gi|157414635|ref|YP_001481891.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81116] gi|315123903|ref|YP_004065907.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841861|gb|EAQ59108.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94] gi|157385599|gb|ABV51914.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81116] gi|307747275|gb|ADN90545.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni M1] gi|315017625|gb|ADT65718.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315931584|gb|EFV10550.1| DNA-directed DNA polymerase [Campylobacter jejuni subsp. jejuni 327] Length = 879 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 95/702 (13%), Positives = 216/702 (30%), Gaps = 173/702 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56 + D ET ++ ++ F+F ++ H + Q Sbjct: 318 IIAFDTETTGLD----------TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQISLQS 367 Query: 57 LKEALENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALK 110 K+A+E V + HN ++ +++ F L++P ++ T++LA + Sbjct: 368 AKKAIE---VIFNHFVIGHNLKYDFKIIQNNFGLNLP-QKYADTMILAWLKNPSLRVNMD 423 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + L+L + + + L+ + + +Y D +T Sbjct: 424 DLA--LRLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLR 468 Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + E + + + + G +D L + + E L +E Sbjct: 469 FYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEE 528 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278 + +L + +++ LF + L + +T ++VL++ P ++ + Sbjct: 529 IYTLCEDR-FNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILD 587 Query: 279 NRMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ L++ + + R+ + G + TGR S QN+P + Sbjct: 588 YR-ELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYA 645 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 ++ +SC +A +G + D + IE R+LA + ++ Sbjct: 646 KDY-------------------------KSCFVAKDGFSFISLDYSQIELRMLAHFSEDE 680 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF ED++ T F + + R++ K + G Sbjct: 681 KLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFG--------------LIYG 722 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + T + +K + + + + + + Sbjct: 723 MGYKTLSQNLKIEAHL------------------------------AKSYIEKYFENFTS 752 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + + + +Q N + SGR + Sbjct: 753 IKKYFETVKNKAKQ--------------------------NGFITTLSGRKRYFDFENAK 786 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIV 633 Y + +I+Q + D++ M+ K ++L +HDE++ Sbjct: 787 PMQ----------IAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELI 836 Query: 634 CETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E D N +M + + LK +K + Sbjct: 837 FEVKDDLCENFVKKTRDIMENIVK--LKVKLKTSSSIAKNWG 876 >gi|241667791|ref|ZP_04755369.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 896 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 101/695 (14%), Positives = 200/695 (28%), Gaps = 150/695 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F + H ++ Sbjct: 322 AFDTETDSLN----------TYEANLVGLSFCAKEGRAYYIPLQHRYLGVPQQLELEIVL 371 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK ++ + VAHN F+ +L + I +++ T+++A Sbjct: 372 DSLKPVFVDSQKSKVAHNFKFDEKILSKY-GVKI-VNQVNDTMIMAYVLKSSGKHDMDSL 429 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + K G E IA T + +Y D +T ++ Sbjct: 430 S------KEHLGIEPIAY----TTLAGTGRNQLTLDQIDIEKVAKYAAEDADITFRLYNH 479 Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223 + ++ L+ L + G +D A + ++ +L+ + Sbjct: 480 FLKMLKDDEVLYSLYSNVEMPLTIILNNMEKVGVKIDAAKLIEQSANLEDSIKELEIKCY 539 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 L + +L+ LF + GL T +T + VL + A + Sbjct: 540 DLAGQ-EFNLSSPVQLREILFDKMGLPPVKKTAKGQASTSEEVLVQLAEEYEIAALIMKY 598 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ + L + ++ +GR+ + G + TGR S QN+P S + Sbjct: 599 RH-LSKLKNTYTDKLPKMLDVNGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 655 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA + +V AD + IE R++A ++ ++ L Sbjct: 656 ------------------------IRQAFIAEQEFCVVAADYSQIELRIMAHLSKDKNLL 691 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 KAF G D++ T A ++ VT +QR K + L Y A L + Sbjct: 692 KAFNQGLDIHSATAAEVLGISLDMVTSEQRRRAKAINFGLIYGMSA-----FGLAKQLEI 746 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + + +E ++ + +G V + Sbjct: 747 PRGEAQEYIDVYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPDI----SSKNVIQ 802 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 N +A G A K+ + + M + N Sbjct: 803 -RNAAERAAINAPMQGTAADIIKKAMIDVNTMILQEYN---------------------- 839 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 D + M +V E Sbjct: 840 ----------------------------DDIKMVM-QVHDE-----------LVFEVRKA 859 Query: 640 DEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + +M ++ +PL+ + + Sbjct: 860 KLNEITTKIKSIMETSVK--LDVPLEVNVDSGESW 892 >gi|319957123|ref|YP_004168386.1| DNA polymerase i [Nitratifractor salsuginis DSM 16511] gi|319419527|gb|ADV46637.1| DNA polymerase I [Nitratifractor salsuginis DSM 16511] Length = 904 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 111/706 (15%), Positives = 210/706 (29%), Gaps = 175/706 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56 + D ET ++ F+F F++ H P + + Sbjct: 335 VVAFDTETTGLD----------TRSAKMVGFSFAFEEEKAYYVPVAHSYLGVGPQVSLEA 384 Query: 57 LKEALEN-TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG 113 K+A+E IV N F+ ++L + ++ PI T++LA S L + Sbjct: 385 AKKAIEKLMRHRIVGQNLKFDLSLLYSHLEME-PIEPEADTMILAWLLDPGSRVGLDILA 443 Query: 114 -EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + L + +E + + A Y D TR+++ Sbjct: 444 QKFLGYQMKSFKE----------------TVKKGEDFSSVALEEAAFYAAEDAWATRQLY 487 Query: 173 -------------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 L+ E + + G VD +L + + E +L Sbjct: 488 FRLTELFKKGGLEHLLKEAKEVEFPFINVLIAMERLGIRVDTKHLRSLKEELSAELARLT 547 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQV 276 QE+ +L + + ++L LF GL T+ +T + VL + P ++ Sbjct: 548 QEIHTLAGT-EFNIKSTQQLGNVLFGTLGLKGGKKTKTGYSTNESVLRNLIGEHPIVEKI 606 Query: 277 FNNRMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 R + ++ L++ + +GR+ T G + TGR + QN+P S Sbjct: 607 LEYR-EHQKMLSTYVDPLLKLAEKDPEGRIHTTFVQTG-TATGRLASKDPNLQNIPVRSE 664 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 VR +A EG +L D + IE R+LA +G Sbjct: 665 LGRR-------------------------VRRAFVAQEGFRLASIDYSQIELRLLAHFSG 699 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + +AFE GED+++ T + F A Sbjct: 700 DAALREAFEKGEDIHMATAIKLFG---------PEEAAAKRNFA--------KSINFGLL 742 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + A E + + +A+ Sbjct: 743 YGMG------------------------------SRKLADELGITTKEAKEIIEAYFAAF 772 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V ++ Q ++ + + R D Sbjct: 773 PTVRSYLEQIQQQAKE--QGYVETLL-------------------------RRRRVFDYE 805 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAG--YDIVLTV 628 + + + Q + D++ M++ + G ++L + Sbjct: 806 GASGMMK---------AAILREAVNTVFQGSAADLIKLAMLDIDTMIREEGLEARMLLQI 856 Query: 629 HDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE++ E P+ E A+ H M + +PLK + Sbjct: 857 HDELIFEIPEAQAEETAARFRHTMEHI--YPLEVPLKCSVSLGGSW 900 >gi|154175515|ref|YP_001408840.1| DNA polymerase I [Campylobacter curvus 525.92] gi|112803673|gb|EAU01017.1| DNA polymerase I superfamily [Campylobacter curvus 525.92] Length = 879 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 190/699 (27%), Gaps = 167/699 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-VMPQVLKEAL 61 + D ET + ++ F+F F+D H P+ + Sbjct: 318 IIAFDTETT----------DIDTQSAKLVGFSFCFNDENAYYVPVAHSYLGAPKQVGTDF 367 Query: 62 EN---TDVTI---VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG 113 + V N ++ V+K L+ P ++ T+VLA + A+ Sbjct: 368 AAWAVGQIYKGCVVGQNLKYDFKVVKRNLGLE-PPVKFKDTMVLAWLADPSQAVGMDALA 426 Query: 114 EA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K E+ + R + +Y D +T + + Sbjct: 427 KRLYNYDTIKFED----------------VVRRGETFASVPLENAAKYAAEDAWITLKFY 470 Query: 173 KRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 K L E + G ++ L D + L E+ Sbjct: 471 KSFLNLLDPALIELANAHEFPFILTLFDMESVGIAINKKKMQNLILQNDAKIKILTSEIY 530 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280 LT + +++L LF L ++ T+ +T + VL+ ++ R Sbjct: 531 ELTG-ENFNINSVKQLGAVLFEHLKLPVKKKTKTGYSTDEAVLAELIDAHLVIAKLLEYR 589 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + L+ N D R F + TGR + QN+P Sbjct: 590 -ELYKLQSTYCEPLLNLANKDENSRIYTNFVQTGTSTGRLASKNPNLQNIPARG------ 642 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++ VR A EG V D + IE R+LA + ++ L Sbjct: 643 -------------------SLAKDVRETFEAKEGYSFVGLDYSQIELRLLAHFSRDEALL 683 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 KAFE ED++ T F RA+ K + L Y G+ Sbjct: 684 KAFENDEDIHARTAISIFG----SADGQNRAVAKSINFGLIY--------------GMGS 725 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + A V + + + + + Sbjct: 726 SKLAGQVNI------------------------------SRAEAKEYIERYFKAFPTIKG 755 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + A + + GR + Sbjct: 756 FLEGIKTAAKN--------------------------EGFVRTLLGRKRFFDFTNATPMQ 789 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---GYDIVLTVHDEIVCET 636 Y + I Q + DI+ M+ ++L +HDE++ E Sbjct: 790 ----------TAMYEREAVNTIFQGSAADIIKLAMVKIRPLCSVRAKMLLQIHDELIFEV 839 Query: 637 PDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 D +M + +PLK +K + Sbjct: 840 ADEHAAEFGEAAQKIMQEI--YKLNVPLKTSLNVAKNWG 876 >gi|229543560|ref|ZP_04432620.1| DNA polymerase I [Bacillus coagulans 36D1] gi|229327980|gb|EEN93655.1| DNA polymerase I [Bacillus coagulans 36D1] Length = 875 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 90/657 (13%), Positives = 200/657 (30%), Gaps = 126/657 (19%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 +I F + + D + + K+ +E+ +++ L+ +D Sbjct: 330 GEIIGFGLK--NEKGLFFLRAEDALSSEAFKKWVEDESKIKHVYDAKRSIVALRRY-GID 386 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + L+++ ++ K E E + + KG + ++ Sbjct: 387 LRGTD-FDLLLVSYLLNPSDTVEDFASVAKTHDYGNVETDEAV--YGKGAKRKLPEEKRY 443 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 H + T + +LE E L + + G VD + Sbjct: 444 AEHISRKAEAIDALCEPCTKALKNNGQLELFEQLELPLSLILADMEYTGVKVDTDRLKEM 503 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 + + +++Q + S+ + ++L LF + GL + T+ +T VL Sbjct: 504 GEEFKLRLHEIEQRIYSMAGT-EFNINSPKQLGVILFEKMGLPVIKKTKTGYSTSADVLE 562 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + ++ + R + + L++ ++ DG++ ++TGR S Sbjct: 563 KLEPAHEIVREILHYRQ-LGKLQSTYIEGLLKVVHQDGKVHTRFNQA-LTQTGRLSSTDP 620 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAG 383 QN+P + +R + EG + +D + Sbjct: 621 NLQNIPIRMEEGRK-------------------------IRQAFVPSEEGWLIFSSDYSQ 655 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 +E RVLA ++G++ ++AF G D++ T F+V +VT + R K + + Y Sbjct: 656 VELRVLAHISGDEKLIEAFREGMDIHTKTAMEVFHVKAEEVTSEMRRQAKTVNFGIVYGI 715 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + L ++ + + + + + Sbjct: 716 S-----DYGLSQNLGISRKEAGEFIKRYFASYPRVKEYMDEIVREAKQKGYVSTL----- 765 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 ++RR +P + + Sbjct: 766 ------------------------------------LKRRRYLPEITSRNFNLRSF---- 785 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------ 617 R+ +NT +Q + DI+ + M++ Sbjct: 786 -----------AERTAMNTP------------------IQGSAADIIKKAMIDMAKRLKK 816 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 K ++L VHDE++ E P+ + + +M A PLK + + Sbjct: 817 EKLRARLLLQVHDELIFEAPEEEIEVLKEIVPEVMEHAVDLAA--PLKVDSAYGPTW 871 >gi|92116074|ref|YP_575803.1| DNA polymerase I [Nitrobacter hamburgensis X14] gi|91798968|gb|ABE61343.1| DNA polymerase I [Nitrobacter hamburgensis X14] Length = 1014 Score = 339 bits (870), Expect = 7e-91, Method: Composition-based stats. Identities = 97/693 (13%), Positives = 193/693 (27%), Gaps = 166/693 (23%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDP--------------------VMPQVLKEALENTDV 66 + A + H +LK LE+ Sbjct: 438 QAELSGIALALAPNAACYVPLNHKQAGDSAGLFAAGLAPDQIAIRDALDLLKPLLESGGH 497 Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKM 123 V N F VL A + + + +++ + L+A+ + Sbjct: 498 LKVGFNVKF-TAVLLAQHGIVMQNN--DDVELISYALDAGRGAHDLEALAQR-------- 546 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---- 179 L + Y +T +++ L+P Sbjct: 547 ----WLDHTALNYGELIGSGRNKLAFDQVTIDRATTYAAEYAALTLRLWQVLKPRLVAER 602 Query: 180 ------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + E+ + + RG +D + L+ +L+ E++ L + + Sbjct: 603 MNSVYETLERPMIATLARMERRGITIDRQVLSRLSGEFAQTAARLEAEIQKLAGEPI-NV 661 Query: 234 RCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 +++ +F + GL T+ +T ++L + + + + S+ Sbjct: 662 GSPKQIGEIMFGKMGLPGGSKTKTGAWSTSAQILDDLAEQGHDFPRKILDWRQVSKLKST 721 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L E +N T L A+ TGR S QN+P + + Sbjct: 722 YTDALPEYVNPQTSRVHTTYALAATTTGRLSSNEPNLQNIPVRNEEGRK----------- 770 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R IA+ G KLV AD + IE R+LA +A +AF G D++ Sbjct: 771 --------------IRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIH 816 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + F V + + R K + G++ Sbjct: 817 AMTASEMFGVPVTGMPGEIRRRAKAINF--------------GIIYGIS----------- 851 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A + K + ++ + + Sbjct: 852 -------------------AFGLANQLGIPREEAGTYIKKYFERFPGIRAYMDATRDFCR 892 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + + + GR Y D+ + + R Sbjct: 893 E--------------------------HGYVETLFGRKCHYPDIKSPNP---SHRAFNER 923 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643 Q + DI+ M+ K ++L VHDE++ E PD + Sbjct: 924 AAINARL------QGTAADIIRRAMVRMDDALAAKKLSARMLLQVHDELIFEVPDDEVAA 977 Query: 644 -ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673 ++ H+M P+ +PL+ + + + Sbjct: 978 TLPVVQHVMQDAPFPAMLLSVPLQVDARAADNW 1010 >gi|283955763|ref|ZP_06373254.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336] gi|283792718|gb|EFC31496.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336] Length = 879 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 91/701 (12%), Positives = 213/701 (30%), Gaps = 171/701 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM---- 53 + D ET ++ ++ F+F ++ H + Sbjct: 318 IIAFDTETTGLD----------TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQISLQS 367 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111 + E + N V + HN ++ +++ F L++P ++ T++LA + Sbjct: 368 AKKAIELIFNHFV--IGHNLKYDFKIIQNNFGLNLP-QKYADTMILAWLKNPSLRVNMDD 424 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L+L + + + L+ + + +Y D +T Sbjct: 425 LA--LRLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRF 469 Query: 172 FKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + E + + + + G +D L + + E L +E+ Sbjct: 470 YLYFLKNLEAPLLELAKNCEFDFIRIIMMMEENGIKLDTNALEALMKKFENEIKNLSEEI 529 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279 +L + +++ LF + L + +T ++VL++ P ++ + Sbjct: 530 YTLCEDR-FNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPIIPKILDY 588 Query: 280 RMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R ++ L++ + + R+ + G + TGR S QN+P + + Sbjct: 589 R-ELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAK 646 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + +SC +A +G + D + IE R+LA + ++ Sbjct: 647 DY-------------------------KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEK 681 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF ED++ T F + + R++ K + G+ Sbjct: 682 LLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFG--------------LIYGM 723 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 T + +K + + + + + + + Sbjct: 724 GYKTLSQNLKIEAHL------------------------------AKSYIEKYFENFTSI 753 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + + +Q N + + R + Sbjct: 754 KKYFETVKNEAKQ--------------------------NGFITTLNSRKRYFDFENAKP 787 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVC 634 Y + +I+Q + D++ M+ K ++L +HDE++ Sbjct: 788 MQ----------IAMYERESINSILQGSAADVIKLAMLEIDKELNEDKKLILQIHDELIF 837 Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E D N +M + + LK +K + Sbjct: 838 EVKDDLCENFVKKTRDIMENIVK--LKVKLKTSSSIAKNWG 876 >gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176] gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486] gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176] gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176] gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486] Length = 879 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 94/699 (13%), Positives = 220/699 (31%), Gaps = 167/699 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56 + D ET ++ ++ F+F +++ H + Q Sbjct: 318 IIAFDTETTGLD----------TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQS 367 Query: 57 LKEALENT-DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG 113 K+A+E + ++ HN ++ +++ F+L++P ++ T++LA + + Sbjct: 368 AKKAIEAIFNHFVIGHNLKYDFKIIQNNFDLNLP-QKYADTMILAWLKNPSLRVNMDDLA 426 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L+L + + + L+ + + +Y D +T + Sbjct: 427 --LRLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYL 471 Query: 174 RLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E + + + + G +D L + + E L +E+ + Sbjct: 472 YFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYT 531 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 L + +++ LF + L + +T ++VL+ P ++ + R Sbjct: 532 LCEDR-FNLNSPKQMGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVIAKILDYR- 589 Query: 282 RASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 ++ L++ + + R+ + G + TGR S QN+P + ++ Sbjct: 590 ELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY 648 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SC +A +G + D + IE R+LA + ++ L Sbjct: 649 -------------------------KSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLL 683 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF ED++ T F + + R++ K + G+ Sbjct: 684 NAFANDEDIHARTAIMIFG----ESNYETRSVAKSINF--------------GLIYGMGY 725 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 T + +K + + + + + + + + Sbjct: 726 KTLSQNLKIEA------------------------------NLAKSYIEKYFENFTSIKK 755 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + ++ +Q N ++ SGR + Sbjct: 756 YFEKVKNEAKQ--------------------------NGFIVTLSGRKRYFDFENAKPMQ 789 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVCET 636 Y + +I+Q + D++ M+ K ++L +HDE++ E Sbjct: 790 ----------IAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEV 839 Query: 637 PDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 D N +M + + LK +K + Sbjct: 840 KDDLCENFVKKTRDIMENIVK--LKVKLKTSSSIAKNWG 876 >gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25] gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25] gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902] gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 879 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 95/702 (13%), Positives = 219/702 (31%), Gaps = 173/702 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56 + D ET ++ ++ F+F +++ H + Q Sbjct: 318 IIAFDTETTGLD----------TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQS 367 Query: 57 LKEALENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALK 110 K+A+E V + HN ++ +++ F+L++P ++ T++LA + Sbjct: 368 AKKAIE---VIFNHFVIGHNLKYDFKIIQNNFDLNLP-QKYADTMILAWLKNPSLRVNMD 423 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + L+L + + + L+ + + +Y D +T Sbjct: 424 DLA--LRLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLR 468 Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + E + + + + G +D L + + E L +E Sbjct: 469 FYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEE 528 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278 + +L + +++ LF + L + +T ++VL+ P ++ + Sbjct: 529 IYTLCEDR-FNLNSPKQMGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVIAKILD 587 Query: 279 NRMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ L++ + + R+ + G + TGR S QN+P + Sbjct: 588 YR-ELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYA 645 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 ++ +SC +A +G + D + IE R+LA + ++ Sbjct: 646 KDY-------------------------KSCFVAKDGFSFISLDYSQIELRILAHFSEDE 680 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF ED++ T F + + R++ K + G Sbjct: 681 KLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINF--------------GLIYG 722 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + T + +K + + + + + + Sbjct: 723 MGYKTLSQNLKIEA------------------------------NLAKSYIEKYFENFTS 752 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + + ++ +Q N ++ SGR + Sbjct: 753 IKKYFEKVKNEAKQ--------------------------NGFIVTLSGRKRYFDFENAK 786 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIV 633 Y + +I+Q + D++ M+ K ++L +HDE++ Sbjct: 787 PMQ----------IAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELI 836 Query: 634 CETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E D N +M + + LK +K + Sbjct: 837 FEVKDDLCENFVKKTRDIMENIVK--LKVKLKTSSSIAKNWG 876 >gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2] gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2] Length = 893 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 118/696 (16%), Positives = 211/696 (30%), Gaps = 151/696 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMPQVL 57 ID ET S D ++ + F H + + + L Sbjct: 321 AIDLETSSLDPF----------DCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKKL 370 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 KE LE+ IV N F+ VL +P H T++ A L + Sbjct: 371 KEILEDPGAKIVGQNLKFDYKVLMVKGVEPVPPH--FDTMIAAYLLEPNEKKFNLDDLA- 427 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 LK KM +EL++ Y D +T ++K Sbjct: 428 -LKFLGYKMTSYQELMSFSSP--------LFGFSFADVPVEKAANYSCEDADITYRLYKI 478 Query: 175 LEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L E L + + G VD L++ + +L +E+ Sbjct: 479 LSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYR 538 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL-EDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + +++ LF + G+ T+ +T VL + Sbjct: 539 IAG-EPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEY 597 Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R + + ++ L + +N GR+ + G + TGR S QNLP S +E Sbjct: 598 R-KIQKLKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLPTKSEEGKE 655 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397 +R ++ +V AD + IE R+LA ++G++ Sbjct: 656 -------------------------IRKAIVPQDPNWWIVSADYSQIELRILAHLSGDEN 690 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 LKAFE G D++ T +R FNV P +VT++ R GK++ ++ Y + L Sbjct: 691 LLKAFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTP-----YGLSVRL 745 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + + ++ + + E G + + R ++ Sbjct: 746 GVPVKEAEKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRN--- 802 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 E + T G A K + + R L R + + Sbjct: 803 --TQAEGERIAINTPIQGTAADIIKLAMIEID----------------RELKERKMRSK- 843 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 I+Q +V V DE Sbjct: 844 ----------------------MIIQ-------------VHDE---LVFEVPDE------ 859 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + ++ MT+ +PL+ + K + Sbjct: 860 -EKDALVELVKDRMTNVVK--LSVPLEVDVTIGKTW 892 >gi|283955185|ref|ZP_06372687.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414] gi|283793398|gb|EFC32165.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414] Length = 879 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 99/701 (14%), Positives = 216/701 (30%), Gaps = 171/701 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM---- 53 + D ET A++ ++ F+F +++ H + Sbjct: 318 IIAFDTETTGLD----------AKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQS 367 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111 + E + N V + HN ++ +++ FNL +P + T++LA + Sbjct: 368 AKKAIELIFNHFV--IGHNLKYDFKIIQNNFNLTLPQE-YADTMILAWLKNPSLRVNMDD 424 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L+L + + + L+ + + +Y D +T Sbjct: 425 LA--LRLFNYETLHFESLVK-------------KGENFTSVELEKACKYAAEDAYITLRF 469 Query: 172 FKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + E + + I + G +D L + + E L +E+ Sbjct: 470 YLYFLKNLETPLLELAKTCEFDFIKIIMMIEENGIKLDTNALEILMKKFENEIKNLSEEI 529 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279 L + +++ LF + L + +T ++VL++ P ++ + Sbjct: 530 YILCEDR-FNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILDY 588 Query: 280 RMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R ++ L++ + + R+ + G + TGR S QN+P Sbjct: 589 R-ELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHG---- 642 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + +SC +A EG + D + IE R+LA + ++ Sbjct: 643 ---------------------QYAKNYKSCFVAKEGFSFISLDYSQIELRMLAHFSEDEK 681 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF ED++V T F + + R++ K + L G+ Sbjct: 682 LLNAFANDEDIHVRTAMMIFG----ESNYETRSVAKSINFGL--------------IYGM 723 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 T + +K ++ + + + + + + Sbjct: 724 GYKTLSQNLKIEASL------------------------------AKSYIEKYFENFTSI 753 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + ++ +Q N + SGR + Sbjct: 754 KKYFEKIKNEAKQ--------------------------NGFITTLSGRKRYFDFENAKP 787 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVC 634 Y + +I+Q + D++ M+ K ++L +HDE++ Sbjct: 788 MQ----------IAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIF 837 Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E D N +M + + LK +K + Sbjct: 838 EVKDKLCENFVKKTRDIMENIVK--LKVKLKTSSSIAKNWG 876 >gi|110597086|ref|ZP_01385375.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031] gi|110341277|gb|EAT59742.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031] Length = 944 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 104/695 (14%), Positives = 204/695 (29%), Gaps = 152/695 (21%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----DPVMPQVLKE 59 + +D ET S + + + + + ++L+ Sbjct: 373 IAVDTETTSLN----------TFEAELAGISISTEARKARFIALANSSLNPQSALELLRP 422 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117 LEN ++ N ++ VLK +D+ T++ + L + Sbjct: 423 LLENPELPKTGQNLKYDILVLKKY-GIDLTPVG-FDTMLASYVLDPEEKHNLDDLAARH- 479 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K +EL +Y D + ++ + Sbjct: 480 -LGYKTTTFEEL----------TGTGKAKLHIFDVEPEQLSDYACQDADLALQLEEIFRK 528 Query: 178 LSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E+EL +L + I G C+D ++ V E L +++ + + Sbjct: 529 KLEGEKELLWLCEHIEFPLVSVLAAMEHAGICIDTPHLEKTSEAVGKELELLTEKIYAAS 588 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + ++L LF GL + T+ +T VL +L P + R Sbjct: 589 GAP-FNIDSPKQLSNILFNVLGLPTKKSTKTGFSTNVEVLEELAELHPVVASLLEYR-TL 646 Query: 284 SRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + ++ L + +N GRL + + TGR S QN+P S +E Sbjct: 647 QKLKTTYIDALPKIVNPLTGRLHTSFNQFI-TATGRLSSSNPNLQNIPIRSPLGKE---- 701 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R I S K L+ AD + IE R+ A ++G+ ++A Sbjct: 702 ---------------------IRRAFIPSSPDKWLLSADYSQIELRIAAEISGDPQLIEA 740 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F ED++ T F ++T D R K + + Y + LN+ Sbjct: 741 FRNREDIHTATARVIFG--SDEITPDMRRKAKEVNFGVLYG-----IMPFGLSKRLNIPR 793 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + ++ ++ + + E + +G R ++S + Sbjct: 794 SEAIAIIDTYKAKYPGLFLALQEIIETGKKDGYVSTLLGR--RRYIADLNSRNSNI---Q 848 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 +A T G A K + L S R + RS + Sbjct: 849 KAAERAAMNTPIQGTAADIIKC---------------AMNLCSERLRK----NSMRSVM- 888 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 ++ ++ ET D ++ Sbjct: 889 --------------------------------LLQVHDE-----------LLFETTDEEK 905 Query: 642 F-NASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673 A ++ M K +P++ + K + Sbjct: 906 EPLADLIEEAMIDAAIICGLKNVPVEVDTGIGKNW 940 >gi|313682518|ref|YP_004060256.1| DNA polymerase i [Sulfuricurvum kujiense DSM 16994] gi|313155378|gb|ADR34056.1| DNA polymerase I [Sulfuricurvum kujiense DSM 16994] Length = 909 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 102/708 (14%), Positives = 198/708 (27%), Gaps = 179/708 (25%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53 + D ET ++ F+F D +H Sbjct: 341 IAFDTETTGLDPSKDH----------LVGFSFSTDGKTGYYVPMMHSYLGVGDQVSTEAA 390 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KA 111 + ++ E ++ HN F+ + +D + + T+VLA +L Sbjct: 391 AKAIRLIFE---HRVIGHNIKFDLHFVTRFLGVD-RLSIYADTMVLAWLTDSSRSLAMDN 446 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + ++L E+I + + A +Y D +T + Sbjct: 447 LSQSLLH--------HEMIHFKD-------TVKKGENFASVAIEDACKYAGEDAYITYRL 491 Query: 172 FKRLEPLS-------------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ L+ E + G VD A+ + V E L Sbjct: 492 YEVLKEQLLLKGGQEALDEAFDVEFPFTLTLLGMEKEGIAVDTAVLELFKKEVAHEIATL 551 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQ 275 +++ S V + ++L LF GL T+ +T ++VL + P Sbjct: 552 TEQIHSACGT-VFNLNSPKQLGVILFETLGLPHGKKTKTGYSTDEQVLEGLQFEHPMIPM 610 Query: 276 VFNNRMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + R + + L+ + R+ + G + TGR S QN+P + Sbjct: 611 LLQYR-EYHKLYSTYIEPLIALAQNDPSSRIYTSFVQTG-TATGRLSSKNPNLQNIPVKT 668 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + +R +A GKKL+ D + IE R+LA + Sbjct: 669 A-------------------------LGMRIREAFVAPRGKKLIGIDYSQIELRLLAHFS 703 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + + AF G D+++ T F + +R I K + L Y Sbjct: 704 EDTVLVNAFNEGHDIHMQTAIALFGA---EDASRKRNIAKTVNFGLLYGM---------- 750 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + + + + + + Sbjct: 751 ----------------------------------GQKKLSDTLGITTKEAKEIIERYFET 776 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 V +N + + ++ + +RR Y D Sbjct: 777 FPSVKGYFNGIVEQAKEI--GYVETLLHRRR-------------------------YFDF 809 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLT 627 G+ L Y + + Q + D++ M ++L Sbjct: 810 GSATPMLK---------AAYERESVNTVFQGSASDLIKLSMNKIDTMIRTEGLRARMLLQ 860 Query: 628 VHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 +HDE++ E E A M +PLK + + Sbjct: 861 IHDELIFEVDADVAEEYAVRFVDAMERILE--LRVPLKTSMHIGNHWG 906 >gi|52081410|ref|YP_080201.1| DNA polymerase I [Bacillus licheniformis ATCC 14580] gi|52786786|ref|YP_092615.1| DNA polymerase I [Bacillus licheniformis ATCC 14580] gi|52004621|gb|AAU24563.1| DNA polymerase I [Bacillus licheniformis ATCC 14580] gi|52349288|gb|AAU41922.1| PolA [Bacillus licheniformis ATCC 14580] Length = 879 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 91/675 (13%), Positives = 195/675 (28%), Gaps = 129/675 (19%) Query: 12 SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIV 69 SP L + + ++ F+ ++H + Q KE E+ Sbjct: 317 SPASLVVEQLGDNYHEAPILGFSI-VNEHGAFFIP---EETAVQSDCFKEWAEDESKKKW 372 Query: 70 AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129 ++ L +++ L+ A + V K ++ Sbjct: 373 VFDAKRAAVAL-RWRGIELKGAE-FDVLLAAYIINPGHSYDDVASVAK--EHQLHIVSAD 428 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189 A + KG ++ +H + + E ++LE + E L ++ Sbjct: 429 EAVYGKGAKQAVPDEKELADHLARKAKAISLLREKLLDELEENEQLELFEALEMPLAHIL 488 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G VDV + + + + + ++++ + G + ++L LF + GL Sbjct: 489 GEMESIGVQVDVDRLKKMGEELSAKLAEYEKKIHE-SAGETFNINSPKQLGVILFDKLGL 547 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T+ +T VL + + + R + + L++ + D Sbjct: 548 PVVKKTKTGYSTSADVLEKLRDKHVIIEDILHYRQ-IGKLQSTYVEGLLKVIKKDSHKVH 606 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 T ++TGR S QN+P + +R Sbjct: 607 TRFNQALTQTGRLSSTDPNLQNIPIRLEEGRK-------------------------IRQ 641 Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + S +G + AD + IE RVLA ++ ++ ++AF D++ T F+V+ +VT Sbjct: 642 AFVPSQKGWLIFAADYSQIELRVLAHISKDKNLIEAFTNDMDVHTKTAMDVFHVSEEEVT 701 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 R K + G++ + Sbjct: 702 PAMRRQAKAVNF--------------GIVYGISDYGLSQ--------------------- 726 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + V E + ++ + G Sbjct: 727 ---------NLGITRKEAAAFIERYFHSFQGVKEYM---EETVQEAKQRGYVTTLLS--- 771 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 R ++ + R +Q Sbjct: 772 --------------------RRRYIPELTSRNF---NLRSFAERTAMNTP------IQGS 802 Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + DI+ + M++ ++L VHDE++ E P+ + L +M Sbjct: 803 AADIIKKAMIDMADKLKEKNLQAKLLLQVHDELIFEAPEDEIKVLEKLVPEVMEHALE-- 860 Query: 659 KGLPLKAEGYESKRY 673 +PLK + + Sbjct: 861 LDVPLKVDCASGPSW 875 >gi|319647318|ref|ZP_08001540.1| DNA polymerase I [Bacillus sp. BT1B_CT2] gi|317390665|gb|EFV71470.1| DNA polymerase I [Bacillus sp. BT1B_CT2] Length = 879 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 91/675 (13%), Positives = 195/675 (28%), Gaps = 129/675 (19%) Query: 12 SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIV 69 SP L + + ++ F+ ++H + Q KE E+ Sbjct: 317 SPASLVVEQLGDNYHEAPILGFSI-VNEHGAFFIP---EETAVQSDCFKEWAEDESKKKW 372 Query: 70 AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129 ++ L +++ L+ A + V K ++ Sbjct: 373 VFDAKRAAVAL-RWRGIELKGAE-FDVLLAAYIINPGHSYDDVASVAK--EHQLHIVSAD 428 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189 A + KG ++ +H + + E ++LE + E L ++ Sbjct: 429 EAVYGKGAKQAVPDEKELADHLARKAKAISLLREKLLDELEENEQLELFEALEMPLAHIL 488 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G VDV + + + + + ++++ + G + ++L LF + GL Sbjct: 489 GEMESIGVQVDVDRLKKMGEELSAKLAEYEKKIHE-SAGETFNINSPKQLGVILFEKLGL 547 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T+ +T VL + + + R + + L++ + D Sbjct: 548 PVVKKTKTGYSTSADVLEKLRDKHVIIEDILHYRQ-IGKLQSTYVEGLLKVIKKDSHKVH 606 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 T ++TGR S QN+P + +R Sbjct: 607 TRFNQALTQTGRLSSTDPNLQNIPIRLEEGRK-------------------------IRQ 641 Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + S +G + AD + IE RVLA ++ ++ ++AF D++ T F+V+ +VT Sbjct: 642 AFVPSQKGWLIFAADYSQIELRVLAHISKDKNLIEAFTNDMDVHTKTAMDVFHVSEEEVT 701 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 R K + G++ + Sbjct: 702 PAMRRQAKAVNF--------------GIVYGISDYGLSQ--------------------- 726 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + V E + ++ + G Sbjct: 727 ---------NLGITRKEAAAFIERYFHSFQGVKEYM---EETVQEAKQRGYVTTLLS--- 771 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 R ++ + R +Q Sbjct: 772 --------------------RRRYIPELTSRNF---NLRSFAERTAMNTP------IQGS 802 Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + DI+ + M++ ++L VHDE++ E P+ + L +M Sbjct: 803 AADIIKKAMIDMADKLKEKNLQAKLLLQVHDELIFEAPEDEIKVLEKLVPEVMEHALE-- 860 Query: 659 KGLPLKAEGYESKRY 673 +PLK + + Sbjct: 861 LDVPLKVDCASGPSW 875 >gi|307726557|ref|YP_003909770.1| DNA polymerase I [Burkholderia sp. CCGE1003] gi|307587082|gb|ADN60479.1| DNA polymerase I [Burkholderia sp. CCGE1003] Length = 913 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 113/699 (16%), Positives = 201/699 (28%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +T ++ +F + H + Sbjct: 339 SFDTETTSLDPMT----------AQIVGLSFSVEAGHAAYVPVAHRGPDAPVQLPREEVL 388 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ V + ++ VL +++ TL+ + Sbjct: 389 AKLKPWLESAQQKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVLESHRPHDMDNL 446 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + A EY D +T + + Sbjct: 447 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVALEKAAEYAAEDADITLRLHQT 496 Query: 175 LEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + E+ + + + G +D + + +L+ + Sbjct: 497 MYPQLAAEKTLENVYRDIEVPTSRVLRKMERTGVLIDAEKLRQQSNEIATRLIELESKAY 556 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + T + T + VL + P + + Sbjct: 557 ELAGG-EFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKILLEH 615 Query: 280 RMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ + L +N S GR+ A TGR + QN+P + Sbjct: 616 R-GLSKLKSTYTDKLPRMVNASTGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTGEGRR 673 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA G KLV AD + IE R++A ++G++ Sbjct: 674 -------------------------IREAFIAPPGHKLVSADYSQIELRIMAHISGDESL 708 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF GED++ T A F+V P +V+ DQR + KV+ L Y + L Sbjct: 709 LRAFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMS-----SFGLASNLG 763 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + A + + + + + + + G R ++ Sbjct: 764 ITRDAAKLYIDRYFARYPGVARYMDETRLSAKAKGYVETVFGR---------RLWLPEIN 814 Query: 519 E----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +A G A K + + ++ N Sbjct: 815 GGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVQKWIEESNIG---------------- 858 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 T I+Q ++L V DE Sbjct: 859 -----------------------TRMIMQ-------------VHDE---LILEVPDE--- 876 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P+ L LM A +PL AE + Sbjct: 877 ELPE----VRKRLPELMCGVA--ALKVPLVAEVGAGLNW 909 >gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1] gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1] Length = 903 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 114/687 (16%), Positives = 211/687 (30%), Gaps = 135/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV------HDPVMPQV----L 57 ET + L G + A D + A + + L Sbjct: 329 TET-KELALAVSGTSEEAIDARLTALAISPAEGEAYFISAEFIGSASDGQMFVSEGHPGL 387 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 L N ++T AHN+ + +L + +I T++ A G K +G Sbjct: 388 IALLTNKNITKTAHNAKYLMNLLASA-GQEIQGLD-FDTMLSAHLLGE----KNLGIKDL 441 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + E ++ + + + + KG ++ Sbjct: 442 VFEHFGVEIADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQLAETNLIDL 501 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E L + + G +D L + + V + KL++ + + + + Sbjct: 502 FVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQAGHS-FNIGSPQ 560 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF E L + T+ +T VL K + R + L+TL Sbjct: 561 QLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYR-MLVKLKSTYLDTL 619 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 +N R T + TGR S QN+P E Sbjct: 620 PRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGRE---------------- 663 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R IA +G ++ D + I+ RVLA ++G+ ++AF +D++ T A Sbjct: 664 ---------IRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATAA 714 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 R N+ P++VTK+QR + K + + G++ + Sbjct: 715 RLLNILPSEVTKEQRRLAKTVNFGVI--------------YGMSSYGLEQATE------- 753 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 ++ KA+ +K+ RV+ + E+ Sbjct: 754 -----------------------LSLAEADKFIKAYFEKYPRVAIYFAEIKHQART---- 786 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 N + GR ++ + R Sbjct: 787 ----------------------NGYVETLLGRRRYIPEINSPN---RILRESAERMAINM 821 Query: 595 GKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SML 647 VQ S DI+ M+ K ++L VHDE++ E PD + ++L Sbjct: 822 P------VQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPDAELKRMSALL 875 Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRYR 674 M+ ++ +PLK E + Sbjct: 876 METMSGAVTF--EIPLKVELKSGANWG 900 >gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221] gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221] gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3] Length = 879 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 95/702 (13%), Positives = 218/702 (31%), Gaps = 173/702 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56 + D ET ++ ++ F+F +++ H + Q Sbjct: 318 IIAFDTETTGLD----------TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQS 367 Query: 57 LKEALENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALK 110 K+A+E V + HN ++ +++ F+L++P ++ T++LA + Sbjct: 368 AKKAIE---VIFNHFVIGHNLKYDFKIIQNNFDLNLP-QKYADTMILAWLKNPSLRVNMD 423 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + L+L + + + L+ + + +Y D +T Sbjct: 424 DLA--LRLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLR 468 Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + E + + + + G +D L + + E L +E Sbjct: 469 FYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEE 528 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278 + +L + +++ LF + L + +T ++VL++ P ++ + Sbjct: 529 IYTLCEDR-FNLNSPKQVGDILFEKLKLPSRKKGKTGYSTDEKVLNALLDKHPAITKILD 587 Query: 279 NRMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ L++ + + R+ + G + TGR S QN+P + Sbjct: 588 YR-ELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYA 645 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 ++ +SC +A +G + D + IE R+LA + ++ Sbjct: 646 KDY-------------------------KSCFVAKDGFSFISLDYSQIELRMLAHFSEDE 680 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF ED++ T F + + R++ K + G Sbjct: 681 KLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFG--------------LIYG 722 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + T + +K + + + + + + Sbjct: 723 MGYKTLSQNLKIEAHL------------------------------AKSYIEKYFENFTS 752 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + + + +Q N + SGR + Sbjct: 753 IKKYFETVKNEAKQ--------------------------NGFITTLSGRKRYFDFENAK 786 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIV 633 Y + +I+Q + D++ M+ K ++L +HDE++ Sbjct: 787 PMQ----------IAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELI 836 Query: 634 CETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E D N +M + + LK +K + Sbjct: 837 FEVKDDLCENFVKKTRDIMENIVK--LKVKLKTSSSIAKNWG 876 >gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421] gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421] Length = 879 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 95/702 (13%), Positives = 217/702 (30%), Gaps = 173/702 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56 + D ET ++ ++ F+F +++ H + Q Sbjct: 318 IIAFDTETTGLD----------TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQS 367 Query: 57 LKEALENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALK 110 K+A+E V + HN ++ +++ F L++P ++ T++LA S + Sbjct: 368 AKKAIE---VIFNHFVIGHNLKYDFKIIQNNFGLNLP-QKYADTMILAWLKNPSSRVNMD 423 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + L+L + + + L+ + + +Y D +T Sbjct: 424 DLA--LRLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLR 468 Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + E + + + + G ++ L + + E L +E Sbjct: 469 FYLDFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLNTNALEILMKKFENEIKNLSEE 528 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278 + +L + +++ LF + L + +T ++VL+ P ++ + Sbjct: 529 IYTLCEDR-FNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVITKILD 587 Query: 279 NRMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ L++ + + R+ + G + TGR S QN+P + Sbjct: 588 YR-ELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYA 645 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 ++ +SC +A +G + D + IE R+LA + ++ Sbjct: 646 KDY-------------------------KSCFVAKDGFSFISLDYSQIELRMLAHFSEDE 680 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF ED++ T F + + R++ K + G Sbjct: 681 KLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFG--------------LIYG 722 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + T + +K + + + + + + Sbjct: 723 MGYKTLSQNLKIEAHL------------------------------AKSYIEKYFENFTS 752 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + + + +Q N + SGR + Sbjct: 753 IKKYFETVKNEAKQ--------------------------NGFITTLSGRKRYFDFENAK 786 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIV 633 Y + +I+Q + D++ M+ K ++L +HDE++ Sbjct: 787 PMQ----------IAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELI 836 Query: 634 CETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E D N +M + + LK +K + Sbjct: 837 FEVKDDLCENFVKKTRDIMENIVK--LKVKLKTSSSIAKNWG 876 >gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13] gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13] Length = 925 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 98/691 (14%), Positives = 185/691 (26%), Gaps = 146/691 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEA 60 D ET L ++ +F ++ + + + A Sbjct: 355 AFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEAAKVVERFSPA 404 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 L+N + N F+ VL+ N+ + T++ + + E Sbjct: 405 LQNPKSLKIGQNIKFDILVLRKY-NVKVA-GPLFDTMIAHYLLNPELRHGMDYLAETY-- 460 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 + +ELI EY D VT ++ P Sbjct: 461 LKYQTVHIEELIG---------PKGKNQLSMRNVPVEQIAEYAAEDADVTLKLKNYFAPE 511 Query: 179 SS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E L Y+ + G +D + + KL+QE+ L Sbjct: 512 LKKEGLESLFTTIEMPLIYVLAEMEATGVTLDTVALKQSSGELTASMNKLEQEVYELAG- 570 Query: 229 LVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + +++ LF L + T+ +T + VL + P ++ R Sbjct: 571 AEFNINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLLEYR-GL 629 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + ++ L E +N T + TGR S QN+P E Sbjct: 630 KKLLSTYIDALPELINPQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGRE----- 684 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R I AD + IE R++A ++G+ ++AF Sbjct: 685 --------------------IRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIEAF 724 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 ++G D++ T A+ + + +VT D R K + Y L + Sbjct: 725 QSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISV-----FGLAERLGIPRS 779 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + + + + + E + +R ++ V Sbjct: 780 ESKELIDGYFSTYPRIKEYMEESVKVAKEKGYVETIFKR--KRFLPDINSHNAVVRGY-- 835 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + G A K V + +++ L S L D N Y Sbjct: 836 -AERNAINAPIQGSAADIIKLAMVRIYERFEEEG-----LKSKMILQVHDELNFNVYKEE 889 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 +++ IVL Sbjct: 890 ------------------------AEVVK-----------KIVL---------------- 898 Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 M + +PL A+ E + + Sbjct: 899 ------EEMENVMK--LQVPLIADCGEGENW 921 >gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1] gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1] Length = 903 Score = 337 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 115/687 (16%), Positives = 212/687 (30%), Gaps = 135/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV------HDPVMPQV----L 57 ET + L G + A D + A + + L Sbjct: 329 TET-KELALAVSGTSEEAIDARLTALAISPAEGEAYFISAEFIGSASDGQMFVSEGHPGL 387 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 L N ++T AHN+ + +L + +I T++ A G K +G Sbjct: 388 IALLTNKNITKTAHNAKYLMNLLASA-GQEIQGLD-FDTMLSAHLLGE----KNLGIKDL 441 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + E ++ + + + + KG K ++ Sbjct: 442 VFEHFGVEIADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQLAETKLIDL 501 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E L + + G +D L + + V + KL++ + + + + Sbjct: 502 FVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQAGHS-FNIGSPQ 560 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF E L + T+ +T VL K + R + L+TL Sbjct: 561 QLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYR-MLVKLKSTYLDTL 619 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 +N R T + TGR S QN+P E Sbjct: 620 PRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGRE---------------- 663 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R IA +G ++ D + I+ RVLA ++G+ ++AF +D++ T A Sbjct: 664 ---------IRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATAA 714 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 R N+ P++VTK+QR + K + + G++ + Sbjct: 715 RLLNILPSEVTKEQRRLAKTVNFGVI--------------YGMSSYGLEQATE------- 753 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 ++ KA+ +K+ RV+ + E+ Sbjct: 754 -----------------------LSLAEADKFIKAYFEKYPRVAIYFAEIKHQART---- 786 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 N + GR ++ + R Sbjct: 787 ----------------------NGYVETLLGRRRYIPEINSPN---RILRESAERMAINM 821 Query: 595 GKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SML 647 VQ S DI+ M+ K ++L VHDE++ E PD + ++L Sbjct: 822 P------VQGTSADIIKLAMVRLDEKLKEEKLESRLLLQVHDELIFEVPDAELKRMSALL 875 Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRYR 674 M+ ++ +PLK E + Sbjct: 876 METMSGAVTF--EIPLKVELKSGANWG 900 >gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38] gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38] Length = 950 Score = 337 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 97/694 (13%), Positives = 203/694 (29%), Gaps = 149/694 (21%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59 + D ET L + ++ +F F+ D + + + Sbjct: 378 VCFDTETTGIDAL----------NAELVGMSFSFEKGKGFYVPFPEDQEEAQTLIEKFRP 427 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117 EN ++ + N ++ +L N+ + + T++ + + E Sbjct: 428 FFENENIEKIGQNMKYDLKILSNY-NMQVK-GKLFDTMIAHYLINPDMRHNMDVLSETY- 484 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + + LI + EY D +T ++ + +P Sbjct: 485 -LKYAPKSIETLIGK---------KGKNQLSMRDVPLEDIKEYATEDADITFQLKEHFQP 534 Query: 178 LSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + E L + + G +DV ++ + E +Q++ T Sbjct: 535 ILEKVGTKKLFDEIEIPLVPVLADMEKEGIRLDVEFLKNMSVDMQKEIDAFEQQIYE-TA 593 Query: 228 GLVSSSRCLEKLKTWLFLETGL------HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L LF + + + T + VLS + Sbjct: 594 GEKFNLASPKQLGDILFDKLKIGGAKQKKTKTGQYATGEEVLSYLANEHQIVRDIL-EWR 652 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + ++ L ++ T + TGR S QN+P + Sbjct: 653 QMVKLQSTYIDALPNQVDKKTGRVHTDYMQTVAATGRLSSTNPNLQNIPIRTEKGR---- 708 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R IA E L+ AD + IE R++A + GE+ +K Sbjct: 709 ---------------------LIRKAFIARDENYTLLSADYSQIELRIIAALCGEENMIK 747 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ ED++ +T A+ FN+ +VTK+QR+ K + + Y A + NL+ Sbjct: 748 AFQNHEDIHKSTAAKVFNIPLDEVTKEQRSHAKTVNFGIIYGVSA-----FGLSNQTNLS 802 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + ++F + E+ + G R K ++ V Sbjct: 803 RKESAELIEAYYQTYPKLKSFMTSQVDFARENGYVETISGR--RRYLKDINSANAIVRG- 859 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + G A K + ++ + Sbjct: 860 --GAERNAVNAPIQGSAADIIKIAMI-------------------------NIHKKLTSE 892 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 N ++ ++ +V + +++ Sbjct: 893 NWKSKM---------------------------LLQVHDE-----------LVFDVHNSE 914 Query: 641 EFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 M+ H M + A +PL E K + Sbjct: 915 LEKIQPMIKHEMENAFKMA--VPLDVEIGLGKNW 946 >gi|302039429|ref|YP_003799751.1| DNA polymerase I [Candidatus Nitrospira defluvii] gi|300607493|emb|CBK43826.1| DNA polymerase I [Candidatus Nitrospira defluvii] Length = 881 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 107/665 (16%), Positives = 199/665 (29%), Gaps = 135/665 (20%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 + A G D PQ L E L + + L +D Sbjct: 330 ADIRGCALGRFDGSAAFVQGEARDW-PQPLVECLRDGSKLKAVQDLKPLLLALHRQ-GID 387 Query: 88 IPIHRWICTLVLARSNGLPSALKAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 +P + T+V + A+ L S ++ G+ E Sbjct: 388 MP-GPYFDTMVADYLLNPNRRAHTLEAIAMDLLSYQLGAGER--------EDTSKGPQSL 438 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVD 200 R GE V + +RL+ E L + I G+ +D Sbjct: 439 FDVDEALVRRTGEAAAVTAKVAPMLRERLKEQGSLSLFQDVEMPLVPVLAEIERNGFLLD 498 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 VA L++ ++ E ++ + L G + ++L T LF GL T+ + Sbjct: 499 VAGLQALSKELEHELEQMVGSIYRL-GGGEFNIGSPKQLATVLFETLGLKPLRKTKTGYS 557 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T + L+ Q+ N R ++ ++ L + +N + + T + TG Sbjct: 558 TDEDTLTQLASQHELPAQILNYR-TLTKLKSTYVDALPQLVNPETKRLHTSLNQTVAATG 616 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P +R IA G +L+ Sbjct: 617 RLSSTDPNLQNIPVKGDYGLR-------------------------IREAFIAPPGHQLL 651 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + +E R+LA ++ + L+ FE GED+++ T FN+ +VT+D R K + Sbjct: 652 CADYSQVEPRILAHLSQDPRLLQVFEKGEDIHMATAMEIFNLPAGEVTRDMRRAAKSVVF 711 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y + + + Sbjct: 712 GIVYGISP-----FGLASNIGVPQA----------------------------------- 731 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 ++ + + +K + V L + + G Sbjct: 732 ----DAKKYIETFFEKFAAVRALM---DRNIDDGKTKGYTTTIL---------------- 768 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 GR ++ R + +Q + D++ M+ Sbjct: 769 -------GRRRPIPELQGGDPSQRGV---GERMA------VNSPIQGSAADLIKVAMIKV 812 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMT-SNPSWAKGLPLKAEGYE 669 + ++L VHDE++ E P+ + A L M + + +PLK + Sbjct: 813 HQRLQNELPRCKMILQVHDELIFEVPEQELEQAKQLVKAEMEATGAALGLSVPLKVDLGV 872 Query: 670 SKRYR 674 +R Sbjct: 873 GLNWR 877 >gi|86153587|ref|ZP_01071790.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842548|gb|EAQ59760.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13] Length = 879 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 94/702 (13%), Positives = 216/702 (30%), Gaps = 173/702 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56 + D ET ++ ++ F+F ++ H + Q Sbjct: 318 IIAFDTETTGLD----------TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQISLQS 367 Query: 57 LKEALENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALK 110 K+A+E V + HN ++ +++ F L++P ++ T++LA + Sbjct: 368 AKKAIE---VIFNHFVIGHNLKYDFKIIQNNFGLNLP-QKYADTMILAWLKNPSLRVNMD 423 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + L+L + + + L+ + + +Y D ++ Sbjct: 424 DLA--LRLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYISLR 468 Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + E + + + + G +D L + + E L +E Sbjct: 469 FYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEE 528 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278 + +L + +++ LF + L + +T ++VL++ P ++ + Sbjct: 529 IYTLCEDR-FNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILD 587 Query: 279 NRMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ L++ + + R+ + G + TGR S QN+P + Sbjct: 588 YR-ELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYA 645 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 ++ +SC +A +G + D + IE R+LA + ++ Sbjct: 646 KDY-------------------------KSCFVAKDGFSFISLDYSQIELRMLAHFSEDE 680 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF ED++ T F + + R++ K + G Sbjct: 681 KLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFG--------------LIYG 722 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + T + +K + + + + + + Sbjct: 723 MGYKTLSQNLKIEAHL------------------------------AKSYIEKYFENFTS 752 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + + + +Q N + SGR + Sbjct: 753 IKKYFETVKNKAKQ--------------------------NGFITTLSGRKRYFDFENAK 786 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIV 633 Y + +I+Q + D++ M+ K ++L +HDE++ Sbjct: 787 PMQ----------IAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELI 836 Query: 634 CETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E D N +M + + LK +K + Sbjct: 837 FEVKDDLCENFVKKTRDIMENIVK--LKVKLKTSSSIAKNWG 876 >gi|33602215|ref|NP_889775.1| DNA polymerase I [Bordetella bronchiseptica RB50] gi|33576653|emb|CAE33731.1| DNA polymerase I [Bordetella bronchiseptica RB50] Length = 904 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 107/702 (15%), Positives = 192/702 (27%), Gaps = 164/702 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + +D ET S ++ ++ + H + Sbjct: 331 VALDTETTSLDEM----------QARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEV 380 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111 L+ LE+ + H++ ++ V + + T++ A L Sbjct: 381 IARLRGWLEDAGRAKLLHHAKYDTHVFAN-EGVSLAGVA-EDTMLQAYVLESHRGVGLND 438 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + L E + A L G Y D T ++ Sbjct: 439 LAQRF------------LGRSGVNYEDLCGKGAKQIGFDEVAVALAGHYSCEDSDFTLQL 486 Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P +++ ++ + + G VD + + E L+Q Sbjct: 487 HEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEMLALEQR 546 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277 L + ++L LF GL + T +T + VLS + P + Sbjct: 547 AYELAGQP-FNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQVLL 605 Query: 278 NNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R S+ + L +N GR+ A TGR + QN+P + + Sbjct: 606 EYR-GLSKLKSTYTDKLPRMINPATGRVHTHYSQA-AVITGRLASSDPNLQNIPVRTEAG 663 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 VR IA +G KL+ AD + IE R++A ++ + Sbjct: 664 RR-------------------------VREAFIAEQG-KLLSADYSQIELRIMAHVSDDA 697 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF GED++ T + F V A+V +QR K + L Y G + Sbjct: 698 NLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGV-----FGLASN 752 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L + A + + + + + + G + Sbjct: 753 LGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQL---------PD 803 Query: 517 VSEL----WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + +A G A K V + Sbjct: 804 IRAASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQDWLD------------------- 844 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 R T I+Q +VL Sbjct: 845 --------------AERLRT------RMIMQ-------------VHDE---LVL------ 862 Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E PD + + L LM + +PL AE + Sbjct: 863 --EVPDEELAAVAEALPRLMCDVAT--LRVPLVAEVGMGTNW 900 >gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] gi|254039954|gb|ACT56750.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] Length = 976 Score = 336 bits (862), Expect = 6e-90, Method: Composition-based stats. Identities = 99/711 (13%), Positives = 199/711 (27%), Gaps = 165/711 (23%) Query: 8 FETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--------PVELWDC------------ 47 ET A I A D D Sbjct: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443 Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107 + LK+ EN + HN +++ VL I + + ++++ Sbjct: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGR 500 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 + + ++ ++ K + P + + E+ + V Sbjct: 501 SSHDIA----------SIAQKWLSYTRK--EILKSRKSSIPIDKISDSQVQEHAIENSNV 548 Query: 168 TREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 +++ L P ++ + + + G +D L ++ + Sbjct: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN-KKLTPQ 272 L++ + L+ + ++L LF + T+ T + L P Sbjct: 609 LEENIYDLSG-EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + + S+ ++L +N + T L ++ TGR + QN+P Sbjct: 668 IKNIL-EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + + +R I+ KKL+ AD + IE R+LA + Sbjct: 727 T-------------------------DLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 A + FE D++ A F V +V+ R K + ++ Sbjct: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII------------ 809 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ A + K + Sbjct: 810 --YGISPFRLATQ------------------------------LRIPRSEAADYIKRYFH 837 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + E + Q N + GR + Y + Sbjct: 838 RFPGIHEYIEKTKNFVRQ--------------------------NGYVETIFGRRIHYDE 871 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVL 626 + + +S + R +Q + DI M++ K ++L Sbjct: 872 INSPKSSIRNI---NERAAINAP------IQGSAADITRRAMISVHKSLEDHKLATKMLL 922 Query: 627 TVHDEIVCETPDTDEFNASM-LYHLMTSN--PSWAKGLPLKAEGYESKRYR 674 +HDE+V E P+ + AS + H M P +PLK S ++ Sbjct: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 >gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT] gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT] Length = 903 Score = 336 bits (862), Expect = 6e-90, Method: Composition-based stats. Identities = 114/687 (16%), Positives = 211/687 (30%), Gaps = 135/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV------HDPVMPQV----L 57 ET + L G + A D + A + + L Sbjct: 329 TET-KELALAVSGTSEEAIDARLTALAISPAEGEAYFISAEFIGSASGGQMFVSEGHPGL 387 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 L N ++T AHN+ + +L + +I T++ A G K +G Sbjct: 388 IALLTNKNITKTAHNAKYLMNLLASA-GQEIQGLD-FDTMLSAHLLGE----KNLGIKDL 441 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + E ++ + + + + KG ++ Sbjct: 442 VFEHFGVEIADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQLAEINLIDL 501 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E L + + G +D L + + V + KL++ + + + + Sbjct: 502 FVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQAGHS-FNIGSPQ 560 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF E L + T+ +T VL K + R + L+TL Sbjct: 561 QLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYR-MLVKLKSTYLDTL 619 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 +N R T + TGR S QN+P E Sbjct: 620 PRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGRE---------------- 663 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R IA +G ++ D + I+ RVLA ++G+ ++AF +D++ T A Sbjct: 664 ---------IRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATAA 714 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 R N+ P++VTK+QR + K + + G++ + Sbjct: 715 RLLNILPSEVTKEQRRLAKTVNFGVI--------------YGMSSYGLEQATE------- 753 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 ++ KA+ +K+ RV+ + E+ Sbjct: 754 -----------------------LSLAEADKFIKAYFEKYPRVAIYFAEIKHQART---- 786 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 N + GR ++ + R Sbjct: 787 ----------------------NGYVETLLGRRRYIPEINSPN---RILRESAERMAINM 821 Query: 595 GKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SML 647 VQ S DI+ M+ K ++L VHDE++ E PD + ++L Sbjct: 822 P------VQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPDAEFKRMSALL 875 Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRYR 674 M+ ++ +PLK E + Sbjct: 876 METMSGAVTF--EIPLKVELKSGANWG 900 >gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3] gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3] Length = 921 Score = 336 bits (862), Expect = 6e-90, Method: Composition-based stats. Identities = 97/691 (14%), Positives = 185/691 (26%), Gaps = 146/691 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEA 60 D ET L ++ +F ++ + + + A Sbjct: 351 AFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEVAKVVERFSPA 400 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 L+N + N F+ VL+ N+ + T++ + + E Sbjct: 401 LQNPKSLKIGQNIKFDILVLRKY-NVKVA-GPLFDTMIAHYLLNPELRHGMDYLAETY-- 456 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 + +ELI EY D +T ++ P Sbjct: 457 LKYQTVHIEELIG---------PKGKNQLSMRNVPVEQIAEYAAEDADITLKLKNYFAPE 507 Query: 179 SS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E L Y+ + G +D + + KL+QE+ L Sbjct: 508 LKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEVYELAGT 567 Query: 229 LVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + +++ LF L + T+ +T + VL + P ++ R Sbjct: 568 -EFNINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLLEYR-GL 625 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + ++ L E +N T + TGR S QN+P E Sbjct: 626 KKLLSTYIDALPELINPQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGRE----- 680 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R I AD + IE R++A ++G+ ++AF Sbjct: 681 --------------------IRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIEAF 720 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 ++G D++ T A+ + + +VT D R K + Y L + Sbjct: 721 QSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISV-----FGLAERLGIPRS 775 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + + + + + E + +R ++ V Sbjct: 776 ESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKR--KRFLPDINSHNAVVRGY-- 831 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + G A K V + +++ L S L D N Y Sbjct: 832 -AERNAINAPIQGSAADIIKLAMVRIYERFEEEG-----LKSKMILQVHDELNFNVYKEE 885 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 +++ IVL Sbjct: 886 ------------------------AEVVK-----------KIVL---------------- 894 Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 M + +PL A+ E + + Sbjct: 895 ------EEMENVMK--LQVPLIADCGEGENW 917 >gi|320352875|ref|YP_004194214.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032] gi|320121377|gb|ADW16923.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032] Length = 894 Score = 336 bits (862), Expect = 7e-90, Method: Composition-based stats. Identities = 105/694 (15%), Positives = 191/694 (27%), Gaps = 158/694 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------- 52 + +D ET S L ++ + +D C H Sbjct: 315 VAVDTETDSLDPLK----------ARLVGVSLCTEDGEAWYLPCGHRDEAGELVAGQLPL 364 Query: 53 --MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH-RWICTLVLARSNGL---P 106 + + L+ LE+ T + HN F+ VL A N I + T++ A Sbjct: 365 DRLIEFLRPVLEHPGTTKIGHNLKFDLAVLSAPCNGGIQLACPLHDTMIGAWLLAPDRRT 424 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 L + + L EE + K E R Y DV Sbjct: 425 YKLDDLCGEINLRMTSYEE----VTHADKSED---------AFCRVPLEAAKNYSCEDVY 471 Query: 167 VTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 +++ P + L + + G VD L+ D Sbjct: 472 GALRLYQEQLPQLERADLLALLREVEGPLVPVLAAMEREGIRVDADKLARLSAEFDRRLR 531 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQA 273 + + + ++L LF + L T+ +T +VL + Sbjct: 532 TDELSIYQAAGMS-FNINSPKQLGEVLFEKLQLPKGRKTKTGWSTDVKVLENLSFDHELP 590 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + R ++ ++ L N GR+ + G + TGR S QN+P Sbjct: 591 ALILQYRN-LAKLKSTYVDKLASLRNPRTGRVHTSFNQCG-TATGRLSSSSPNLQNIPIR 648 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +RS IA++G L+ AD + I+ RVLA Sbjct: 649 TEEGRR-------------------------IRSAFIAADGCLLLAADYSQIDLRVLAHY 683 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ + AF+ G+D++ T A FNV+P VT + R + K + + Y Sbjct: 684 SQDRELIAAFQGGQDIHRRTAAEIFNVSPELVTAEMRRVAKTINFGIVYGMS-----SFG 738 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 ++ L+++ + + + ++F + + +G Sbjct: 739 LSSQLHVSRKDAQLFIDRYFAHFSGIKDFMASTIQQAKKDGFVTTLLGRRRPL------- 791 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + A L + R Sbjct: 792 ----------AEINSANRVQREFAERTAINTPIQGTAADIIKLAMLRIHRELLRRDF--- 838 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 R ++ + Sbjct: 839 ----------------RARM---------------------LLQIHDE-----------L 850 Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKA 665 V E P+T+ S L M S +PL Sbjct: 851 VLEVPETELDPVSRLLKDSMESAMP--LRVPLVV 882 >gi|33596490|ref|NP_884133.1| DNA polymerase I [Bordetella parapertussis 12822] gi|33566259|emb|CAE37170.1| DNA polymerase I [Bordetella parapertussis] Length = 904 Score = 336 bits (862), Expect = 7e-90, Method: Composition-based stats. Identities = 107/702 (15%), Positives = 192/702 (27%), Gaps = 164/702 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + +D ET S ++ ++ + H + Sbjct: 331 VALDTETTSLDEM----------QARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEV 380 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111 L+ LE+ + H++ ++ V + + T++ A L Sbjct: 381 IARLRGWLEDAGRAKLLHHAKYDTHVFAN-EGVSLAGVA-EDTMLQAYVLESHRGVGLND 438 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + L E + A L G Y D T ++ Sbjct: 439 LAQRF------------LGRSGVNYEDLCGKGAKQIGFDEVAVPLAGHYSCEDSDFTLQL 486 Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P +++ ++ + + G VD + + E L+Q Sbjct: 487 HEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEMLALEQR 546 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277 L + ++L LF GL + T +T + VLS + P + Sbjct: 547 AYELAGQP-FNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQVLL 605 Query: 278 NNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R S+ + L +N GR+ A TGR + QN+P + + Sbjct: 606 EYR-GLSKLKSTYTDKLPRMINPATGRVHTHYSQA-AVITGRLASSDPNLQNIPVRTEAG 663 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 VR IA +G KL+ AD + IE R++A ++ + Sbjct: 664 RR-------------------------VREAFIAEQG-KLLSADYSQIELRIMAHVSDDA 697 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF GED++ T + F V A+V +QR K + L Y G + Sbjct: 698 NLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGV-----FGLASN 752 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L + A + + + + + + G + Sbjct: 753 LGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQL---------PD 803 Query: 517 VSEL----WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + +A G A K V + Sbjct: 804 IRAASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQDWLD------------------- 844 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 R T I+Q +VL Sbjct: 845 --------------AERLRT------RMIMQ-------------VHDE---LVL------ 862 Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E PD + + L LM + +PL AE + Sbjct: 863 --EVPDEELAAVAEALPRLMCDVAT--LRVPLVAEVGMGTNW 900 >gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI] gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Pelotomaculum thermopropionicum SI] Length = 882 Score = 336 bits (861), Expect = 8e-90, Method: Composition-based stats. Identities = 94/652 (14%), Positives = 187/652 (28%), Gaps = 143/652 (21%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 +F + + ++LK E+ ++ HN E L + + Sbjct: 356 SFALEGESTAYSLDGPPDKILEILKTICEDGNIKKYCHNGK-ETIRLLHRNGITLRQLA- 413 Query: 94 ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA-RFCKGETHECLYDRNKPNHRE 152 T++ A S+ + + + + L A + + Sbjct: 414 FDTMIAAYLLNPASSNQDL---------EDISLEHLNAVLPGEDRKLPAQAHCIMELAQL 464 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 Y D +F +E + + + G VD +++ + Sbjct: 465 LDNKLKLY-GQD-----RLFYEIEIPLAG------ILAEMEIEGVAVDKKQLEAMSEELG 512 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKL 269 + KL E+ LT + ++L LF + L + T+ +T VL Sbjct: 513 RQIEKLADEIYRLTG-REFNINSPKQLGKVLFEDLKLPVIKKTKTGYSTDADVLEELAAA 571 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 ++ R ++ + L +N + T + TGR S QN+ Sbjct: 572 HEAVAKILEYRQ-MAKLKSTYADGLAALINPETGKLHTTFHQTVTNTGRLSSSDPNLQNI 630 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARV 388 P + +R I L+ AD + IE RV Sbjct: 631 PIRLEAGR-------------------------LIRKVFIPGRPENLLLTADYSQIELRV 665 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++G+ +KAF+ GED++ T A F V P +VT++ R K + + Y Sbjct: 666 LAHISGDPALIKAFKNGEDIHTRTAAEIFAVRPEEVTREMRTRAKAVNFGIVYG-----L 720 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 + ++ + + +++ + + Sbjct: 721 SDFGLARDIKVSRQEARRYIENYFARYAGVKDYIERIIREARQKGYVTTL---------- 770 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 +RR +P ++ Sbjct: 771 -------------------------------LNRRRYLPDLFSPNRTIRSF--------- 790 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GY 622 R+ +NT +Q + DI+ M+N + Sbjct: 791 ------GERTAMNTP------------------IQGSAADIIKLAMVNIHRELAEHGLKA 826 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ + P + L M + +PL E + + Sbjct: 827 KMILQVHDELIFDAPAVEIDQLKDLVKRCMENA--LVLEVPLLVEIKAGRNW 876 >gi|255034889|ref|YP_003085510.1| DNA polymerase I [Dyadobacter fermentans DSM 18053] gi|254947645|gb|ACT92345.1| DNA polymerase I [Dyadobacter fermentans DSM 18053] Length = 963 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 92/678 (13%), Positives = 199/678 (29%), Gaps = 148/678 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEA 60 D ET S D ++ +F + D + + Sbjct: 393 CFDTETTSLD----------TTDAELVGLSFSYLAGEAFYIPVPADRQQAEEIVGYFRAV 442 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 EN ++ + N ++ VLK +++ + T++ + + + Sbjct: 443 FENENIEKIGQNIKYDMLVLKNY-GIEVH-GKLSDTMLAHYLLEPDKRHGMDILAASY-- 498 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 + + LI + + A +Y D +T ++ Sbjct: 499 LNYEPVSITSLIGK---------KGGKQGNMRDVAIPEITQYAGEDADITFQLHSIFSRE 549 Query: 179 S----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E L + ++ + G +D+ ++ +++ + + + E+ Sbjct: 550 LPKVNAAKLFNEVEMPLTKVLASMENTGVRLDINALKEMSAVLESDLRQTESEIYEAAGQ 609 Query: 229 LVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + ++L LF + L T+T T + +LS + A ++ + R Sbjct: 610 S-FNISSPKQLGEVLFEKMKLIEKPKKTKTGQYATGEEILSDLEANHLIARKILDYR-EL 667 Query: 284 SRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + ++ L ++S GR+ + A+ TGR S QN+P + E Sbjct: 668 QKLKSTYVDALPTMVSSRTGRIHTSYNQAVAA-TGRLSSTNPNLQNIPIRTPRGRE---- 722 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R + +++ AD + IE R++A +G+ +A Sbjct: 723 ---------------------IRKAFVPDSADFQILSADYSQIELRIMAAFSGDASMTEA 761 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G D++ TT ++ F V +VT D R K++ + Y A L + Sbjct: 762 FNQGRDIHATTASKVFQVPLEEVTSDMRRKSKMVNFGIIYGISA-----FGLAQRLGIPR 816 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + EE+ + + + + E + Sbjct: 817 GEASEIIRAYFEEFPAVKGYMDKVVNDAREREYVETI----------------------- 853 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 +RR +P + + N + + Sbjct: 854 ------------------LGRRRYLPDINSRNQTNRGYAERNA--------INAPIQGSA 887 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 ++ + E L M+ L VHDE+V + ++ Sbjct: 888 ADMIKVAMINIHDFMAKEK---------LKSRMI----------LQVHDELVFDAHYSEI 928 Query: 642 FNASM-LYHLMTSNPSWA 658 + LM + A Sbjct: 929 DLLKERVDELMRNAIPMA 946 >gi|154687041|ref|YP_001422202.1| DNA polymerase I [Bacillus amyloliquefaciens FZB42] gi|154352892|gb|ABS74971.1| PolA [Bacillus amyloliquefaciens FZB42] Length = 879 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 87/666 (13%), Positives = 189/666 (28%), Gaps = 132/666 (19%) Query: 22 CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEALENTDVTIVAHNSYFERTV 79 Y E+ ++ F+ ++ + + + K E+ + +S R+V Sbjct: 328 DNYHEEP-ILGFSI-VNETGLYYIP---KEIAIQSETFKSWAEDESMKKWVFDSK--RSV 380 Query: 80 LK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138 + +++ L+ A ++ V K + + A + KG Sbjct: 381 VALRWQGIELKGTE-FDALLAAYIINPGNSYDDVASVAK--EYGLNIVSKDEAVYGKGAK 437 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198 ++ +H + + E +LE E L + + G Sbjct: 438 RAVPAEKELADHLARKASAVNSLRDKLLHALEENNQLELYEDLELPLALILGEMESMGVK 497 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256 VDV + + + + + ++++ + + ++L LF + GL T+ Sbjct: 498 VDVERLKRMGEELKAKLKEYEEKIHDIAG-EPFNINSPKQLGVILFEKLGLPPVKKTKTG 556 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + R + + L++ D T ++ Sbjct: 557 YSTSADVLEKLADKHDIVAHILQYRQ-IGKLQSTYIEGLLKVTRKDSHKVHTRFNQALTQ 615 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGK 374 TGR S QN+P + +R + Sbjct: 616 TGRLSSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEPDW 650 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 + AD + IE RVLA ++ ++ ++AF D++ T F+V+ +VT+ R K Sbjct: 651 LIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVSEDEVTQAMRRQAKA 710 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + G++ + Sbjct: 711 VNF--------------GIVYGISDYGLSQ------------------------------ 726 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + + V ++ ++ + G + Sbjct: 727 NLGITRKEAGAFIDRYLESFPGVKAYM---EESVQEAKQKGYVTTLMQ------------ 771 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 R ++ + R +Q + DI+ + M Sbjct: 772 -----------RRRYIPELTSRNF---NLRSFAERTAMNTP------IQGSAADIIKKAM 811 Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667 ++ ++L VHDE++ E P + L +M A +PLKA+ Sbjct: 812 IDMAAELKEKNLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA--LALDVPLKADY 869 Query: 668 YESKRY 673 + Sbjct: 870 ASGPSW 875 >gi|305432895|ref|ZP_07402053.1| DNA-directed DNA polymerase I [Campylobacter coli JV20] gi|304444049|gb|EFM36704.1| DNA-directed DNA polymerase I [Campylobacter coli JV20] Length = 879 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 98/701 (13%), Positives = 213/701 (30%), Gaps = 171/701 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56 + D ET S ++ ++ F+F ++ H + Q Sbjct: 318 IIAFDTETTS----------IDTKEAKIVGFSFCMSENEAFYVPLTHNYLGVGKQVSLQS 367 Query: 57 LKEALENTDVTI---VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111 K+A+E + + HN ++ +++ F L +P ++ T++LA + Sbjct: 368 AKKAIE--LIFKHFIIGHNLKYDFKIIENNFKLSLP-QKYADTMILAWLKNPSLRVNMDD 424 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L+L + + + L+ + + +Y D +T Sbjct: 425 LA--LRLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRF 469 Query: 172 FKRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + + + + G +D L + + E L +E+ Sbjct: 470 YLYFLKNLEPHLLDLAKNYEFDFIKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEI 529 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279 +L + +++ LF + L + +T ++VL+ P ++ + Sbjct: 530 YALCEDR-FNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNELLDKHPVISKILDY 588 Query: 280 RMRASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R ++ L++ D R+ + G + TGR S QN+P + + Sbjct: 589 R-ELAKLYSTYCEPLLKLALKDENSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAK 646 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + +SC IA EG + D + IE R+LA + ++ Sbjct: 647 DY-------------------------KSCFIAKEGFSFISLDYSQIELRMLAHFSEDEK 681 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF+ ED++ T F + + R+I K + L Y G Sbjct: 682 LLNAFKNDEDIHARTAIMIFG----ESNYETRSIAKSINFGLIYGMG------------- 724 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + + + + + + + Sbjct: 725 -------------------------------YKTLSKNLKIEANLAKTYIEKYFENFTSI 753 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + ++ + N + SGR + Sbjct: 754 KSYFEKVKNEAK--------------------------ANGFISTLSGRKRYFDFENAKP 787 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVC 634 + Y + +I+Q + DI+ M+ K ++L +HDE++ Sbjct: 788 MQV----------AMYERESINSILQGSAADIIKFAMLEIAKILNQDKRLILQIHDELIF 837 Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E D N +M + + LK +K++ Sbjct: 838 EVKDELCENFVKKTSDIMENIVK--LKVKLKTSSSIAKKWG 876 >gi|89100389|ref|ZP_01173253.1| DNA polymerase I [Bacillus sp. NRRL B-14911] gi|89084908|gb|EAR64045.1| DNA polymerase I [Bacillus sp. NRRL B-14911] Length = 877 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 83/663 (12%), Positives = 197/663 (29%), Gaps = 137/663 (20%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACF 84 + F+ + V + + K+ E+ + ++ V Sbjct: 331 AEIAGFSAASGNG-VYFIP-AELALSSETFKKWAEDESKKKIV----YDAKRTEVSLRHH 384 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHEC 141 + + L+ + +++ V + + + ++ A + KG + Sbjct: 385 GIHLKGVE-FDLLIASYIINPSESIEDFASVAKRHGYNGVQTDD-----AVYGKGAKRKI 438 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 H E + + + ++ E E L + + +G VD+ Sbjct: 439 PAQEELAGHLARKAAALEALRDKLEDELKENRQYELFYDLEMPLSLILADMESQGVKVDL 498 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 + + ++ + +++ + L + ++L LF + GL T+ +T Sbjct: 499 ERLQAMGEQINQKLGDIEERIHELAG-EAFNINSPKQLGVILFEKLGLPPVKKTKTGYST 557 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + ++ R + + L++ + T ++TGR Sbjct: 558 SADVLEKLEDKHEIIREILQYRQ-LGKLQSTYIEGLLKVTDKKTGKVHTRFNQALTQTGR 616 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLV 377 S QN+P + +R + SE G + Sbjct: 617 LSSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEKGWVIF 651 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA +AG++ ++AF +D++ T F+V+ +VT + R K + Sbjct: 652 AADYSQIELRVLAHIAGDEKLIEAFREDQDVHTKTAMEVFHVSEGEVTSNMRRHAKAVNF 711 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 G++ + Sbjct: 712 --------------GIVYGISDYGLSQ------------------------------SLG 727 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + + + V E +++ Q +Q + + + Sbjct: 728 ITRKEAGQFIDRYLESYPGVREYMDDIIQEAKQ--KGYVSTLLH---------------- 769 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R ++ + R +Q + D++ + M++ Sbjct: 770 --------RRRYLPEITSRNF---NLRSFAERTAMNTP------IQGSAADVIKKAMIDM 812 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYES 670 ++L+VHDE++ E P+ + + +M + +PLK + Sbjct: 813 ADRLREEGLQSRLLLSVHDELIFEAPEEEIEILKRIVPDVMENTVD--LDVPLKVDFSYG 870 Query: 671 KRY 673 + Sbjct: 871 PTW 873 >gi|108759777|ref|YP_631312.1| DNA polymerase I [Myxococcus xanthus DK 1622] gi|108463657|gb|ABF88842.1| DNA polymerase I [Myxococcus xanthus DK 1622] Length = 908 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 109/675 (16%), Positives = 191/675 (28%), Gaps = 147/675 (21%) Query: 28 VCVILFAFGFDDHPVELWDCVH---------DPVMPQVLKEALENTDVTIVAHNSYFERT 78 ++ D H +E LE+ V H+ Sbjct: 348 AKLVGLGVALPDGQTAYVPLRHAQLGVTQVRPEAFTAAFREVLEDAAVKKGGHDLKALSL 407 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138 VL + + +L+ A+ + + EL E Sbjct: 408 VLAN-DGITLHGAH-DDVELLSYLLNPSRREHAL-----VDLSRERLNTELPPLPPAAEG 460 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYL 188 DR +H + + R + L E L L Sbjct: 461 KRGKKDRALADHTVE-EVATGFAIR-AEAARRLAPELWKELEAAKLAALARDMELPLLPL 518 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + RG +D A + VD +E+ + +L LF E Sbjct: 519 LAQMERRGVLLDTAELSRTSVKVDAAVEAQVKEVYRHAG-REFNIGSNPQLVEVLFTELK 577 Query: 249 LHL---EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + + Q VL + P + R S+ L+TL + +DGR+ Sbjct: 578 LPIIKRGKTGPSADQEVLEKLSEEHPLPGAIIEYR-SLSKLKSTYLDTLPTLVAADGRIH 636 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 T A+ TGR S QN+P + E +R Sbjct: 637 TTYHQA-ATATGRLSSTDPNLQNIPVRTDLGRE-------------------------IR 670 Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 +A+EG +LV AD + +E R+LA +A + ++AF ED++ T A F VA QV Sbjct: 671 RAFVAAEGHQLVSADYSQVELRLLAHIANDPVLIEAFLHDEDIHTRTAAEVFGVAKEQVD 730 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 ++QR + GL+ Sbjct: 731 REQRRVA--------------KMVNFGIAYGLSP-------------------------- 750 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + + +++ + L + ++ + G Sbjct: 751 ----HGLGARLGIAQDVARDIIERYFTRYAGIRRY---LEETVDRARKTGYVETLY---- 799 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 GR D+ + + R +Q Sbjct: 800 -------------------GRRRYMADLNSKN---RGVAQAAERAAINMP------IQGT 831 Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWA 658 + D++ + M+ +A ++L VHDE++ E PD + L M+S Sbjct: 832 AADLIKKAMLAVDEALTAQKLRTRMLLQVHDELLFEAPDAEVEQVKALAVKAMSSVAD-- 889 Query: 659 KGLPLKAEGYESKRY 673 +PLK E + + Sbjct: 890 LKVPLKVEVGAGRSW 904 >gi|33592382|ref|NP_880026.1| DNA polymerase I [Bordetella pertussis Tohama I] gi|33572027|emb|CAE41550.1| DNA polymerase I [Bordetella pertussis Tohama I] gi|332381798|gb|AEE66645.1| DNA polymerase I [Bordetella pertussis CS] Length = 904 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 106/702 (15%), Positives = 192/702 (27%), Gaps = 164/702 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + +D ET S ++ ++ + H + Sbjct: 331 VALDTETTSLDEM----------QARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEV 380 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111 L+ LE+ + H++ ++ V + + T++ A L Sbjct: 381 IARLRGWLEDAGRAKLLHHAKYDTHVFAN-EGVSLAGVA-EDTMLQAYVLESHRGVGLND 438 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + L E + A L G Y D T ++ Sbjct: 439 LAQRF------------LGRSGVNYEDLCGKGAKQIGFDEVAVPLAGHYSCEDSDFTLQL 486 Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P +++ ++ + + G VD + + E L+Q Sbjct: 487 HEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEMLALEQR 546 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277 L + ++L LF GL + T +T + VLS + P + Sbjct: 547 AYELAGQP-FNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQVLL 605 Query: 278 NNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R S+ + L ++ GR+ A TGR + QN+P + + Sbjct: 606 EYR-GLSKLKSTYTDKLPRMISPATGRVHTHYSQA-AVITGRLASSDPNLQNIPVRTEAG 663 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 VR IA +G KL+ AD + IE R++A ++ + Sbjct: 664 RR-------------------------VREAFIAEQG-KLLSADYSQIELRIMAHVSDDA 697 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF GED++ T + F V A+V +QR K + L Y G + Sbjct: 698 NLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGV-----FGLASN 752 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L + A + + + + + + G + Sbjct: 753 LGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQL---------PD 803 Query: 517 VSEL----WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + +A G A K V + Sbjct: 804 IRAASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQDWLD------------------- 844 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 R T I+Q +VL Sbjct: 845 --------------AERLRT------RMIMQ-------------VHDE---LVL------ 862 Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E PD + + L LM + +PL AE + Sbjct: 863 --EVPDEELAAVAEALPRLMCDVAT--LRVPLVAEVGMGTNW 900 >gi|295399494|ref|ZP_06809476.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93] gi|294978960|gb|EFG54556.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93] Length = 878 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 89/655 (13%), Positives = 195/655 (29%), Gaps = 125/655 (19%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 ++ FA + + + + LE+ + LK + + Sbjct: 334 ILGFAIA--NEHGNFFIRTDTALSSSLFTTWLEDESKKKSVFDGKRAIVSLKWQ-GVHLR 390 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + L+ + + + V K + E + + KG + ++ Sbjct: 391 GIQ-FDLLIASYLLNPSQSTEDVASIAKTKQYVGVQSDEAV--YGKGAKQKVPDEQVLAE 447 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 H + + ++ + E L + + G VDV + + Sbjct: 448 HLVRKAAAIRALEQGFIHDLQENEQYSLFTDLELPLSTILAEMEFAGVKVDVERLKEMGE 507 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266 + + +++QE+ L + ++L LF + L + T+ +T VL Sbjct: 508 ELAEQLKEVEQEIYRLAGQ-EFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSAEVLEKL 566 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 ++ + R + + L++ ++ D T+ ++TGR S Sbjct: 567 APQHEIVEKILHYRQ-LGKLQSTYIEGLLKVVHRDTNKVHTIFNQALTQTGRLSSTEPNL 625 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIE 385 QN+P + +R I + AD + IE Sbjct: 626 QNIPIRLEEGRK-------------------------IRQAFIPSEPDWVIFSADYSQIE 660 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RVLA +A ++ + AF G D++ T F+V+ +VT + R K + + Y Sbjct: 661 LRVLAHIANDENLIDAFRHGLDIHTKTAMDIFHVSKEEVTPNMRRQAKAVNFGIVYGIS- 719 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + LN+ E + + + + + + + Sbjct: 720 ----DYGLSQNLNITRKEAAEFIKRYFEIFPGVKQYMKDIVQEAKQKGYVTTL------- 768 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 +RR +P + + Sbjct: 769 ----------------------------------LHRRRYLPDITSRNFNLRSF------ 788 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620 R+ +NT +Q + DI+ + M++ +K Sbjct: 789 ---------AERTAMNT------------------PIQGSAADIIKKAMIDLSKRLQKEN 821 Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P + + +M + +PLK + + + Sbjct: 822 MKARMLLQVHDELILEAPKDEIERLQQIVPEVMENAVQ--LRVPLKVDYHFGPTW 874 >gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10] gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10] Length = 893 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 116/696 (16%), Positives = 209/696 (30%), Gaps = 151/696 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMPQVL 57 ID ET S D + + F H + + + L Sbjct: 321 AIDLETSSLDPF----------DCDIAGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKKL 370 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 KE LE+ IV N F+ VL +P H T++ A L + Sbjct: 371 KEILEDPGAKIVGQNLKFDYKVLMVKGVEPVPPH--FDTMIAAYLIEPNEKKFNLDDLA- 427 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 LK KM +EL++ Y D +T ++K Sbjct: 428 -LKFLGYKMTSYQELMSFSSP--------LFGFSFVDVPLEKAANYSCEDADITYRLYKT 478 Query: 175 LEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L E L + + G VD L++ + +L +E+ Sbjct: 479 LSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYR 538 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL-EDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + + +++ LF + G+ T+ +T VL + Sbjct: 539 IAG-EPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEY 597 Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R + + ++ L + +N GR+ + G + TGR S QNLP S +E Sbjct: 598 R-KIQKLKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLPTKSEEGKE 655 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397 +R ++ +V AD + IE R+LA ++G++ Sbjct: 656 -------------------------IRKAIVPQDPNWWIVSADYSQIELRILAHLSGDEN 690 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L+AFE G D++ T +R FNV P +VT++ R GK++ ++ Y + L Sbjct: 691 LLRAFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTP-----YGLSVRL 745 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + + ++ + + E G + + R ++ Sbjct: 746 GVPVKEAEKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRN--- 802 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 E + T G A K + + R L R + + Sbjct: 803 --TQAEGERIAINTPIQGTAADIIKLAMIEID----------------RELKERKMRSK- 843 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 I+Q +V V DE Sbjct: 844 ----------------------MIIQ-------------VHDE---LVFEVPDE------ 859 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + ++ M + +PL+ + K + Sbjct: 860 -EKDALVELVKDRMMNVVK--LSVPLEVDVTIGKTW 892 >gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [NC10 bacterium 'Dutch sediment'] Length = 873 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 90/672 (13%), Positives = 196/672 (29%), Gaps = 152/672 (22%) Query: 25 AEDVCVILFAFGFDDHPV-ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 D AF + + + ++ L + H+ ++ A Sbjct: 326 TADGEFFGLAFCAEPDVALCCFPDAMTDSYLERVRPVLAGERPGKIGHDLK---RIMTAI 382 Query: 84 FNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 + + T+V + + ++ L+ + + Sbjct: 383 GKKGVALRGLSFDTMVASYLLNPNRSDHSLAT--------------LVFELLGVKWEQGP 428 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTI 192 R + + + ++ + L P + E L + ++ Sbjct: 429 GARGGN---DGRETAMRGAAEEAHLVWQLKEALLPQLGQAGLLPLFTTIEMPLIEVLASM 485 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 + G+ VD L + ++ + ++L+ + +L + ++L LF L Sbjct: 486 EEVGFSVDTDQLSELGKELESQLSRLESRIFALAG-EHFNINSPKQLAEVLFQRLKLTPL 544 Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTL 308 T+ +T VL +V N R ++ ++ L+ + GR+ + Sbjct: 545 KRTKTGYSTNVEVLQRLAVTHELPAEVLNYR-SLAKLKSTYVDVLLRLAERTSGRIHTSF 603 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + TGR S QN+P + +R Sbjct: 604 NQ-TVTATGRLSSSEPNLQNIPVRTEVGRR-------------------------IRQAF 637 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 +ASEG +L+ AD + IE R+LA ++ +Q + AF G D++ +T A F V P VT + Sbjct: 638 VASEGHRLLSADYSQIELRILAHLSQDQALIAAFIAGGDVHRSTAAEVFGVQPEAVTVEM 697 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R KV+ G++ A ++ Sbjct: 698 RRRAKVINF--------------GIVYGMSPFGLAAELEI-------------------- 723 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + Q + V + + Sbjct: 724 ----------SQEEAALYIDRYFQIYHGVKAFIDRTICEARE------------------ 755 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + GR ++ ++ + +L +Q + D Sbjct: 756 --------LGFVSTFWGRRRAIPELKSSDQTVRQLGERL---------AVNTPIQGSAAD 798 Query: 609 ILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGL 661 ++ M+ ++ ++L +HDE++ E P+ + A + M + + Sbjct: 799 LIKVAMIAISRRLRSEQLETRMILQIHDELLFEVPEVELDVARRMATEEMEWAAT--LSV 856 Query: 662 PLKAEGYESKRY 673 PLK + + Sbjct: 857 PLKVDIGVGTSW 868 >gi|253577306|ref|ZP_04854624.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14] gi|251843310|gb|EES71340.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14] Length = 886 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 93/687 (13%), Positives = 188/687 (27%), Gaps = 144/687 (20%) Query: 10 TRSPIDLTKCGICKYAED---VCVILFAFGFDDHPVEL-WDCVHDPVMPQVLKEALENTD 65 T ++ + + E+ ++ L +D + ++ L + Sbjct: 317 TADLPNIEGIIVESHGENPHQAEMMGMVLSTASRHYFLSFDVLQSEAA-AEVRAWLADEQ 375 Query: 66 VTIVAHNSYFERT----VLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKL 118 V ++ VL + + A + + + +L Sbjct: 376 VPKRG----YDLHRADLVLFWH-GVAFAGAE-HDVQLAAYLLDPTESDQTISGLAAKYQL 429 Query: 119 SSQ-KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 +E A+F E + R+ +A + D ++ + Sbjct: 430 PQVPGDDEVYGKGAKFKVPEPD--VLSRHLARKADALLRILPLQRED----LAKYEMEKL 483 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E L + + +G V+ L + + KL + + + + Sbjct: 484 FYELEMPLSRILADMEKQGVAVNKEALKELGVEFEAQINKLVARIYEIAGQ-EFNINSTK 542 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF + GL + T+ +T VL + R ++ + L Sbjct: 543 QLGEILFDKLGLPVIKKTKTGYSTDAEVLEKLAPYHEIVQFILEYRQ-LAKLQSTYVEGL 601 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ ++ T + TGR S QN+P + Sbjct: 602 LKEISPKTGKVHTYFRQTIAATGRLSSQYPNLQNIPIRLEEGRK---------------- 645 Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R + EG ++ AD + IE RVLA ++G+ +AF D++ T Sbjct: 646 ---------IRKVFVPSEEGWFILSADYSQIELRVLAHISGDPGLQEAFLHDMDIHTKTA 696 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 F V P QV + R K + + G++ + Sbjct: 697 MDVFGVGPDQVDANMRRSAKAVNFGIV--------------YGISDYGLSQ--------- 733 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 R + + V +E+ +A ++ Sbjct: 734 ---------------------NLNITRKEAARFIEQYFNAFQGVRRYMDEIVKAAKR--- 769 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 + + R ++ + R Sbjct: 770 -----------------------DGYVKTLLERRRYLPEINASNF---NLRSFAERTAMN 803 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML 647 +Q + DI+ M+ + ++L VHDE+V E P + S L Sbjct: 804 TP------IQGTAADIIKLAMVRMDEELHKHGLKSRMLLQVHDELVFEVPPEELEFMSKL 857 Query: 648 Y-HLMTSNPSWAKGLPLKAEGYESKRY 673 M +PLKAE + Sbjct: 858 VPETMGKALE--LSVPLKAEVSSGLNW 882 >gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7] gi|89517759|gb|EAS20415.1| DNA polymerase I [Flavobacteria bacterium BBFL7] Length = 946 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 106/694 (15%), Positives = 214/694 (30%), Gaps = 150/694 (21%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59 + D ET LT ++ AF ++ D + LK Sbjct: 375 VCFDTETTGLDPLT----------AELVGIAFSWEKGKGFYLPIPEDREAAQVIVDQLKP 424 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE-AL 116 E+ + V N ++ VL +D+ T++ + + E L Sbjct: 425 FFESASIEKVGQNLKYDIKVLDKY-GVDVK-GPMFDTMLAHYLINPDMRHNMDVLAETYL 482 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + Q + E LI + EY D +T ++ + Sbjct: 483 NYTPQSIVE---LIGK---------KGKNQLSMRDVDLEKQKEYAVEDADITLQLKEHFT 530 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P E L + + G +D +L+ ++ + T+L++++ + Sbjct: 531 PELASAGTDKLFKDIEMPLLDVLAAMEIEGINLDEDFLSSLSGDLETDITQLEKDIYEVA 590 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L LF + L T+ +T + VLS K V + R Sbjct: 591 G-EEFNIGSPKQLGVILFEKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHAIIQNVLDYR- 648 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ ++ L +++ + T + TGR S QN+P + Sbjct: 649 GLSKLKSTYVDALPNQVDAKTQRIHTNYMQTVAATGRLSSTDPNLQNIPIRTERGR---- 704 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 VR I E L+ AD + IE R++A ++ E+ + Sbjct: 705 ---------------------QVRKAFIPRDENYTLIAADYSQIELRIIAALSEEENMIA 743 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF++GED++ +T A+ FNVA VT++QR+ K + + Y A + +L+ Sbjct: 744 AFQSGEDIHASTAAKVFNVALEDVTREQRSNAKTVNFGIIYGVSA-----FGLSNQTDLS 798 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 ++ + + + + + E+ + +G R K ++ V Sbjct: 799 RGEAKELIDTYYATYPKLKAYMQDQVDFARENGYVETVLGR--RRYLKDINSSNAVVRG- 855 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + G A K + ++ + Sbjct: 856 --AAERNAVNAPIQGSAADIIKIAMI-------------------------NIHKKFEEM 888 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH-DEIVCETPDT 639 N ++ ++ +V +H DE+ Sbjct: 889 NCKSKM---------------------------LLQVHDE---LVFDIHNDEL------- 911 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E ++ M + + +PL E + + Sbjct: 912 -EDMKKLIQGEMQNA--YKMTVPLDVEVGTGQNW 942 >gi|116749047|ref|YP_845734.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB] gi|116698111|gb|ABK17299.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB] Length = 902 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 108/702 (15%), Positives = 191/702 (27%), Gaps = 161/702 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---------- 52 + I ET + + +FGF+D D Sbjct: 326 VVSIQVETTRKDAMAS----------DLAGLSFGFEDDGAWYVPLGPDGSEGDGRLPAAV 375 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 L+ L + + H+ V K +++ T+V A Sbjct: 376 ALAALEPVLGRSRPAKIGHDLKTAWIVFKKH-GIELRGIA-FDTMVAAYLLDPGK----- 428 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + + L E Y R + Sbjct: 429 -QNYGIDR---VAAECLGENIDSYEDVTGKGKSQVGFDTIDIGRAAAYSCAAADAARRMH 484 Query: 173 KRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L+ + + L + + RG D +L+ + + Sbjct: 485 PVLKRKLDESRLTELFEKIELPLITVLARMEFRGITADAEKLESLSIDFQKALDRTADTI 544 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNN 279 L + + ++L LF + GL + T++ T VL P A V Sbjct: 545 YDL-AKEKFNIQSPKQLAYILFEKLGLRVVKKTKSGPSTDMAVLEELALEHPIADHVLVF 603 Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + +N GR+ + A+ TGR S QN+P + + Sbjct: 604 R-TLAKLKGTYADALGKLINPRTGRIHTSYNQTVAA-TGRLSSSDPNLQNIPIRTEEGRK 661 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +RS I + G L+ AD + IE R+LA + ++ Sbjct: 662 -------------------------IRSAFIPAPGWLLLSADYSQIELRILAHCSKDEHL 696 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF ED++ T A F V+P +VT + R K + G+ Sbjct: 697 LEAFRDDEDIHRRTAAEMFGVSPIEVTPEMRRQAKTINF--------------GIIYGMG 742 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + Q + V Sbjct: 743 PFGLAQR------------------------------LRISTKTARTAIDKYFQGYRGVR 772 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + GR ++ + Sbjct: 773 RFIDTTIELARR--------------------------LGYSETLLGRRRFIPELQSRNK 806 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYD--IVLTVHDEI 632 + R Q + D++ + M++A A G ++L VHDE+ Sbjct: 807 TIRQL---GERLAINTPL------QGTAADLIKKAMIDAEDALNGSGLRTVMLLQVHDEL 857 Query: 633 VCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 V ETP + A L +M W +PLK E + Sbjct: 858 VFETPREELAAAQELVRRVMEDV--WKLDVPLKVELGWGDNW 897 >gi|251795550|ref|YP_003010281.1| DNA polymerase I [Paenibacillus sp. JDR-2] gi|247543176|gb|ACT00195.1| DNA polymerase I [Paenibacillus sp. JDR-2] Length = 890 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 96/689 (13%), Positives = 192/689 (27%), Gaps = 150/689 (21%) Query: 12 SPIDLTKCGICKYA-----EDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTD 65 S + T+ G+ A V+ A D + L++ LE+ D Sbjct: 321 SALQGTEHGLYVEAIGENPHQAEVLGLAAAVGD-TAYVVPVAALQQPFTAELRKWLEDAD 379 Query: 66 VTIVAHNSYFERTVLKACFNL-DIPI-HRWICTLVLARSNGLP---SALKAVGEALK--- 117 F+ ++ I + A L A+ + Sbjct: 380 KPKNG----FDTHKIELALGWRGIEWHGAAFDVQLAAYLLDPTDTNLTLNALCDRYGQSS 435 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV--TREIFKRL 175 + + GK R+ +A R + D+ E++ Sbjct: 436 VPHDEAVYGKG----AKFKVPDNETLHRHLSAKADAVRKLTSLMRADLEKRGMNELYF-- 489 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 EQ L + + +G V+ A L ++ + + E+ L + Sbjct: 490 ----ELEQPLSVILAGMERQGIKVEKAELERLGSELETKLSAAVSEIYRLAEM-EFNIGS 544 Query: 236 LEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L LF + GL ++ T+ +T VL + + R S+ + Sbjct: 545 PKQLGEVLFEKLGLPVQKKTKTGYSTDAEVLEKLAPYHEIVPLILHYR-TLSKLQSTYIE 603 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L++ + + T + TGR S QN+P Sbjct: 604 GLLKEVRPETGKIHTYYRQTIAATGRLSSQFPNLQNIPIRLEEGR--------------- 648 Query: 353 DPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R + G ++ AD + IE RVLA ++G++ +AF D++ Sbjct: 649 ----------QIRKAFVPSEPGWYILAADYSQIELRVLAHISGDERLKEAFIHDMDIHTK 698 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F V+ QV + R K + + G++ + Sbjct: 699 TAMDVFGVSADQVDSNMRRSAKAVNFGIV--------------YGISDFGLSQ------- 737 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + + + V + +++ + Sbjct: 738 -----------------------NLNITRKEAAKFIEQYFEVFQGVRKYMDDIVMQARR- 773 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + + R D+ + R Sbjct: 774 -------------------------DGFVTTLLERRRYLPDIKASNF---NLRSFAERTA 805 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETP-DTDEFNA 644 +Q + DI+ M+ + ++L VHDE+V E P + E Sbjct: 806 MNTP------IQGTAADIIKLAMVRMNETLRERGLKSRMLLQVHDELVFEVPEEELELMK 859 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ M + +PLKA+ + Sbjct: 860 ELVPSTMAGALT--LDVPLKADVNYGVNW 886 >gi|310658711|ref|YP_003936432.1| DNA polymerase I [Clostridium sticklandii DSM 519] gi|308825489|emb|CBH21527.1| DNA polymerase I [Clostridium sticklandii] Length = 888 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 99/645 (15%), Positives = 194/645 (30%), Gaps = 141/645 (21%) Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109 + LK+ EN ++ +N + +LK +++ + + S+ Sbjct: 360 EEKDVLKLKDVFENPEIKKYGYNLKNDCLILKPYE-INL-TGLYFDIAIAEYLIDSTSSN 417 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV-- 167 K K + E K + Y + + Sbjct: 418 Y---------EIKDIALKYNLGDVLSLEELLGKGKSKKDFKDLSDAQISGYACSVLDIVD 468 Query: 168 --------TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 T E + E L + + G D + + L Q D+E L+ Sbjct: 469 KGKEALITTIENYNMHNLFYEVEMPLVEILADMEYIGISADKEVLNELKQKFDIEIKTLE 528 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQV 276 + G + ++L LF + GL T+ +T VL + P ++ Sbjct: 529 ASIYE-YAGENFNINSPKQLGHILFDKLGLPAIKKTKTGYSTNAEVLEALSDKHPIIDKI 587 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ ++ L+ +N GR+ + + TGR S QN+P Sbjct: 588 TLYRQY-TKLQSTYVDGLLNIINPKTGRIHSSFNQ-TITTTGRISSTEPNMQNIPVRLEI 645 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 EL R +A E LV AD + IE R+LA +A + Sbjct: 646 GREL-------------------------RKVFVAPEDMYLVDADYSQIELRILAHIAND 680 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF G+D++ T + FNV +VTK+ R+ K + + Y + Sbjct: 681 EGLIDAFSKGDDIHTITASEVFNVPLDEVTKELRSAAKAVNFGIVYG-----ISDFGLSN 735 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + + ++ Sbjct: 736 NLG---------------------------------------ISKQVAKEYIDNYFARYP 756 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + ++ + + + + GR ++G+ Sbjct: 757 YVKKYMEDIVEKAKN--------------------------DGYVETYIGRRRYIPELGS 790 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629 N + ++L +Q + D++ M+ ++L VH Sbjct: 791 NNFIMKNLGKRL---------AMNTPIQGSAADVIKIAMVKVYARLKSEGLKSKLILQVH 841 Query: 630 DEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE++ E+PD+++ + L M S + L + K + Sbjct: 842 DELIIESPDSEKSYVADLLKEEMESAVD--LNVKLTVDAKWGKSW 884 >gi|121534305|ref|ZP_01666129.1| DNA polymerase I [Thermosinus carboxydivorans Nor1] gi|121307075|gb|EAX47993.1| DNA polymerase I [Thermosinus carboxydivorans Nor1] Length = 874 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 99/673 (14%), Positives = 189/673 (28%), Gaps = 173/673 (25%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 +I A + H+ +++ + L + + V +N+ + ++ Sbjct: 342 LIGLAI-WAGDEAVYIP--HNVNGWELVWDLLADETIPKVTYNAK-DVCNACKAKGTELR 397 Query: 90 IHRWICTLVLARSNGLPSA---LKAVG-EALKL---SSQKMEEGKELIARFCKGETHECL 142 + A +A L + + L L K G Sbjct: 398 -GLCFDIQLAAYLLEPTAAKYPLTELACQHLGLAVGDMDKEHLGTP-------------- 442 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTI 192 +Y V + ++ L+ E L + + Sbjct: 443 ----------------DYAGWAAEVVQRLYPVLKEKLVAAGLAELYEEIELPLVPVLSEM 486 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G VD+ L Q + L E+ L + +L LF L + Sbjct: 487 EIAGIRVDLTQLDALAQEITDRIETLLTEIYQLAGQ-EFNVNSTRQLGHILFEVLKLPVI 545 Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 T+ +T VL P + R+ ++ L+ L + + +D GR+ Sbjct: 546 KKTKTGYSTDAEVLEKLAGQHPLIDCLLEYRL-LTKLKSTYLDGLRDLIRADTGRIHTHF 604 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + TGR S QN+P + +R Sbjct: 605 NQ-TVTATGRLSSSEPNLQNIPIRTEIGRR-------------------------IRELF 638 Query: 369 IASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + G + AD + IE RVLA M+G+ + AF +D++ T A F V A+VT Sbjct: 639 VPGPGYDWIMSADYSQIELRVLAHMSGDDNLIDAFRHNQDIHTHTAAEVFGVPMAEVTAQ 698 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 RA K + + Y + + ++ +S ++ +N+ + Sbjct: 699 MRARAKAVNFGIVYGIS-----DFGLSRDIGVSRKEAGQYIDSYFAKYRGVKNYIDNVIN 753 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + +RR +P Sbjct: 754 LARQQGYVTTLF-----------------------------------------GRRRFLP 772 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + R+ +NT +Q + Sbjct: 773 DINSGNFNQRAF---------------AERTAMNTP------------------IQGTAA 799 Query: 608 DILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKG 660 DI+ + M+ + ++L VHDE+V E + + + L M + A Sbjct: 800 DIIKKAMITVYRQLRDRRLKSRLLLQVHDELVLEVAEAERVLVAQLVKQAMEDAVTLA-- 857 Query: 661 LPLKAEGYESKRY 673 +PL A+ + Sbjct: 858 VPLVADVKTGANW 870 >gi|57168476|ref|ZP_00367610.1| DNA polymerase I (polA) [Campylobacter coli RM2228] gi|57020284|gb|EAL56958.1| DNA polymerase I (polA) [Campylobacter coli RM2228] Length = 847 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 98/701 (13%), Positives = 213/701 (30%), Gaps = 171/701 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56 + D ET S ++ ++ F+F ++ H + Q Sbjct: 286 IIAFDTETTS----------IDTKEAKIVGFSFCMSENEAFYVPLTHNYLGVGKQVSLQS 335 Query: 57 LKEALENTDVTI---VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111 K+A+E + + HN ++ +++ F L +P ++ T++LA + Sbjct: 336 AKKAIE--LIFKHFIIGHNLKYDFKIIENNFKLSLP-QKYADTMILAWLKNPSLRVNMDD 392 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L+L + + + L+ + + +Y D +T Sbjct: 393 LA--LRLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRF 437 Query: 172 FKRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + + + + G +D L + + E L +E+ Sbjct: 438 YLYFLKNLEPHLLDLAKNYEFDFIKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEI 497 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279 +L + +++ LF + L + +T ++VL+ P ++ + Sbjct: 498 YALCEDR-FNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNELLDKHPVISKILDY 556 Query: 280 RMRASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R ++ L++ D R+ + G + TGR S QN+P + + Sbjct: 557 R-ELAKLYSTYCEPLLKLALKDENSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAK 614 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + +SC IA EG + D + IE R+LA + ++ Sbjct: 615 DY-------------------------KSCFIAKEGFSFISLDYSQIELRMLAHFSEDEK 649 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF+ ED++ T F + + R+I K + L Y G Sbjct: 650 LLNAFKNDEDIHARTAIMIFG----ESNYETRSIAKSINFGLIYGMG------------- 692 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + + + + + + + Sbjct: 693 -------------------------------YKTLSKNLKIEANLAKTYIEKYFENFTSI 721 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + ++ + N + SGR + Sbjct: 722 KSYFEKVKNEAK--------------------------ANGFISTLSGRKRYFDFENAKP 755 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVC 634 + Y + +I+Q + DI+ M+ K ++L +HDE++ Sbjct: 756 MQV----------AMYERESINSILQGSAADIIKFAMLEIAKILNQDKRLILQIHDELIF 805 Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E D N +M + + LK +K++ Sbjct: 806 EVKDELCENFVKKTSDIMENIVK--LKVKLKTSSSIAKKWG 844 >gi|320162435|ref|YP_004175660.1| DNA polymerase I [Anaerolinea thermophila UNI-1] gi|319996289|dbj|BAJ65060.1| DNA polymerase I [Anaerolinea thermophila UNI-1] Length = 938 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 107/703 (15%), Positives = 201/703 (28%), Gaps = 160/703 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMPQ 55 + +D ET S L + ++ + + H + Sbjct: 358 IALDTETTSTDPL----------NGALVGISLAVEPGTGYYLPVGHLTGEPQLPLESIRD 407 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112 L L + V N ++ L ++ TL+ LK + Sbjct: 408 ALAPFLGDPRKPKVGQNLKYDLLAL-RLAGMEAQGLA-FDTLLAEWLVDPASRALGLKEM 465 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E +M +ELI + + + Y D +T + Sbjct: 466 AERY--LGVQMTRIEELI----------GTGKNQRTMAQVSVAQVAPYAAADAEITLRLK 513 Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 LE E L + + G +DV + + ++++E+ Sbjct: 514 PILEERMLKAGVTRLFQDVEMPLVPVLADMEWNGILLDVPFLQRMGVELSQRLAEIEKEI 573 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-------TTCQRVLSSNKKLTPQAIQ 275 +L + ++L LF E L D + +T VL + P Sbjct: 574 YALVGHP-FNINSTQQLSRVLFEELRLEPPDRRKKTSAGLYSTSAEVLEELRGRHPVLDL 632 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + NR S+ ++ L + +N GR+ G+ TGR + QN+P + Sbjct: 633 ILENR-ELSKLKSTYVDALPQQVNPRTGRVHTRFNQTGS-VTGRLASSDPNLQNIPTRT- 689 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 + VR+ IA EG L+ D + IE R++A +A Sbjct: 690 ------------------------DLGRQVRNAFIADEGWVLLSVDYSQIELRIVAHVAN 725 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A + V VT++ R K + L Y A + Sbjct: 726 DEAMLAAFRAGQDIHAATAAAIYGVPLEAVTREMRRHAKAINFGLIYGMSA-----FGLS 780 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ-- 512 +L + E++ + F ++ + +G + + Sbjct: 781 RSADLTLAEAENFVKAYFEQFPGVKRFLDDLRRRAAREGYVETLLGR------RRYFPNL 834 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 K+ L + G A K ++ LP Sbjct: 835 KNPANPALKAREEREAINAPIQGTAADIIK--------------LAMIRLPEALR----- 875 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 +R ++ +VL Sbjct: 876 ------------AAGSRARL---------------------LLQVHDE---LVL------ 893 Query: 633 VCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E P + A ++ H+M + + +PL E K + Sbjct: 894 --EVPREEMPGTAKLVQHVMETA--YPLQIPLTTEARWGKNWG 932 >gi|323529237|ref|YP_004231389.1| DNA polymerase I [Burkholderia sp. CCGE1001] gi|323386239|gb|ADX58329.1| DNA polymerase I [Burkholderia sp. CCGE1001] Length = 913 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 115/699 (16%), Positives = 200/699 (28%), Gaps = 158/699 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +T ++ +F + H + Sbjct: 339 SFDTETTSLDPMT----------AQIVGLSFAVEAGHAAYVPVAHRGPDAPVQLPRDEVL 388 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ V + ++ VL +++ TL+ + Sbjct: 389 AKLKPWLESAKHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVLESHRPHDMDNL 446 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + A EY D +T + + Sbjct: 447 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVALDKAAEYAAEDADITLRLHQT 496 Query: 175 LEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P + E+ + + + G +D + + +L+ E Sbjct: 497 LYPQLAAEKTLEHVYRDIEVPTSRVLRKMERTGVLIDAEKLRLQSSEIAARLIELESEAY 556 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F L + T + T + VL + P + + Sbjct: 557 VLAGG-EFNLGSPKQIGQIFFERLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKILLEH 615 Query: 280 RMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ + L +N S GR+ A TGR + QN+P + Sbjct: 616 R-GLSKLKSTYTDKLPRMVNASTGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTGEGRR 673 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA G KLV AD + IE R++A ++G++ Sbjct: 674 -------------------------IREAFIAPPGHKLVSADYSQIELRIMAHISGDESL 708 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF GED++ T A F+V P +V+ DQR + KV+ L Y + L Sbjct: 709 LRAFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMS-----SFGLASNLG 763 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + A + + + + + + + G R ++ Sbjct: 764 ITRDAAKLYIDRYFARYPGVARYMDETRLSAKAKGYVETVFGR---------RLWLPEIN 814 Query: 519 E----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +A G A K + + ++ N Sbjct: 815 GGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVQKWIEESNIG---------------- 858 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 T I+Q ++L V DE Sbjct: 859 -----------------------TRMIMQ-------------VHDE---LILEVPDE--- 876 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P+ L LM A +PL AE + Sbjct: 877 ELPE----VRKRLPELMCGVA--ALKVPLVAEVGAGLNW 909 >gi|152990932|ref|YP_001356654.1| DNA polymerase I [Nitratiruptor sp. SB155-2] gi|151422793|dbj|BAF70297.1| DNA polymerase I [Nitratiruptor sp. SB155-2] Length = 888 Score = 334 bits (856), Expect = 4e-89, Method: Composition-based stats. Identities = 96/708 (13%), Positives = 211/708 (29%), Gaps = 180/708 (25%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + D ET +D K ++ F+F + + H+ Sbjct: 321 VAFDTETD-DLDTKK---------ANLVGFSFAYSEEKAYYVPIGHNYLGVGDQVGLDKA 370 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111 + + + E TI+ HN F+ ++L +D + T++LA S+ L++ Sbjct: 371 LEAISKIFE---HTIIGHNLKFDLSLLYRY-GID-EKKDIVDTMILAWLVDPGSSVGLES 425 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 V + ++IA + + + + +Y D +T + Sbjct: 426 VAKRF--------LDHDMIAYKE-------TVKKGEDFSQVSIDAACKYASEDAVITYMV 470 Query: 172 FKRLEPLSSKEQELWYLD-------------QTINDRGYCVDVALAHTLNQIVDVERTKL 218 + +L K+ +D + G +D+ L ++ ++ Sbjct: 471 YFKLLDALRKQGASHLIDEAKKVEFPFVNTLIHMEQAGIKIDIPFFEELKSSLEKRIDEI 530 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQ 275 Q++ G + ++L LF + L T++ T + L + K P Sbjct: 531 TQKIYE-YAGGEFNINSTKQLAAILFEKLKLPPLKKTKSGYSTNETTLQALKDKHPIIPL 589 Query: 276 VFNNRMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + R + ++ L+ + R+ + G + TGR + QN+P + Sbjct: 590 LLEYR-ELYKLKSTYIDPLINYAKRDPKHRIYTSFIQTG-TATGRLASKNPNLQNIPIKT 647 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + +R IA EG+ L+ D + IE R+LA + Sbjct: 648 ELGRK-------------------------IRYGFIAGEGRLLIGIDYSQIELRLLAHFS 682 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + L+AF+ G D+++ T + F + K++R I K + Sbjct: 683 KDPALLEAFQKGRDIHMETAIKLFGK---EHAKEKRNIAKSINF--------------GL 725 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + A + + +++ Sbjct: 726 IYGMG------------------------------SRKLAETLGISTKEAKAIIESYFAS 755 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 V + + + ++RR + + Sbjct: 756 FPTVKSYLESVENFAKT--HGYVETLLKRRRYFDFAHASGAQ------------------ 795 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627 Y + T + Q + D++ M I+L Sbjct: 796 ----------------LAAYLREATNTVFQGSAADLIKMAMNKIKNVIDEKQLEAKILLQ 839 Query: 628 VHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 +HDE++ E + A +M + +P++ ++ + Sbjct: 840 IHDELIFEVQENQAQELAEEFKQIMQTIHP--LNVPIECSVQIARNWG 885 >gi|78188162|ref|YP_378500.1| DNA polymerase A [Chlorobium chlorochromatii CaD3] gi|78170361|gb|ABB27457.1| DNA polymerase A [Chlorobium chlorochromatii CaD3] Length = 924 Score = 334 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 101/696 (14%), Positives = 201/696 (28%), Gaps = 152/696 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLK 58 + +D ET S + + + + D + + + LK Sbjct: 352 HIAVDTETTSLD----------VFEAELAGISLCAEAGKAFFIATTPDALERKEVVKQLK 401 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116 LEN +T N ++ VLK +++ T++ + L + Sbjct: 402 PLLENPAITKSGQNLKYDMLVLKKY-GIELAPIS-FDTMLASYVLNPDEHHNLDDMALRY 459 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 L K + + + Y D V ++ + L+ Sbjct: 460 ------------LGRTTTKYDELTGTGKQRRHIFEVEKEALTNYACQDADVAFQLEEVLQ 507 Query: 177 PLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E L + T+ G +D + + ++E L + + Sbjct: 508 AQLQAEPQLLALCTTMEFPLVRVLATMEYAGIAIDTEHLARVAETTELELQSLTDNIYAA 567 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L LF + L T+ +T VL P A + + R Sbjct: 568 AGSS-FNIDSPKQLSHVLFTDLSLPTGKSTKTGFSTDVGVLEELAATYPIASDLLSYR-T 625 Query: 283 ASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L + +N GR+ + + TGR S QN+P + +E Sbjct: 626 LQKLKGTYIEALPKIINPRTGRIHTSFNQHI-TATGRLSSSNPNLQNIPVRTALGKE--- 681 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I S L+ AD + IE R+ A ++G++ + Sbjct: 682 ----------------------IRRAFIPSTPEHWLLSADYSQIELRIAAELSGDERLIA 719 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF GED++ T F +++ D R K + + Y Q LN+ Sbjct: 720 AFRNGEDIHTATAQVIFGT--EEISSDMRRKAKEVNFGVLYG-----IQPFGLAKRLNIP 772 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 V + ++ N R + E E +G R ++ Sbjct: 773 QKEAKVIIETYKAKYPQLFNVLRHIIEEGKEKGYVTTLLGR--RRYIADLNSRN------ 824 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + +A E+ + + Sbjct: 825 -GTVQKAAERA-------------------------------------------AMNTPI 840 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 T + + L +QA + +E ++ E++ ET D++ Sbjct: 841 QGTAADIIKCAMN---LCYQQMQASG--MASEMLLQVHD-----------ELLFETTDSE 884 Query: 641 EFNASMLYH-LMTSNPSWA--KGLPLKAEGYESKRY 673 + + L M K +P++ + K + Sbjct: 885 KEALTKLVENAMKEAAVLCGMKQVPVEVDCGVGKNW 920 >gi|23099618|ref|NP_693084.1| DNA polymerase I [Oceanobacillus iheyensis HTE831] gi|22777848|dbj|BAC14119.1| DNA polymerase I [Oceanobacillus iheyensis HTE831] Length = 880 Score = 334 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 89/657 (13%), Positives = 193/657 (29%), Gaps = 129/657 (19%) Query: 30 VILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 + A + D + + K E+ + ++ + L N++ Sbjct: 336 IEGIAV-VNKERASFIPTDIALNSNI---FKAWAEDPQKHKIVFDAKRTKVALLRN-NIN 390 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + +L+ + + S+ + E + F KG + Sbjct: 391 MQGI-IFDSLLASYLLNPAENNHDIPAIANRKSRSDVQFDEEV--FGKGAKQKVPEADVL 447 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 H ++ ++ E L E L + + G VD+ + Sbjct: 448 NEHVVRKTQLLFDLYPEMEEELGNNEQYELLKELEMPLALILAEVEHYGVQVDIDKLKDM 507 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 + + + L+QE+ L + ++L LF + GL + T+ +T VL Sbjct: 508 GEDLKERLSTLEQEVYELAG-ETFNLNSPKQLGPILFEKLGLPVIKKTKTGYSTAADVLE 566 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + ++ R + + L++ + D T ++TGR S Sbjct: 567 QLENEHDIIPKLLMYRQ-LGKLQSTYIEGLLKVVRKDTSRIHTRYNQALTQTGRLSSIEP 625 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAG 383 QN+P + +R + + + AD + Sbjct: 626 NLQNIPIRLEEGRK-------------------------IRQAFVPSKDNWIMFAADYSQ 660 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA +AG++ +KAF+ D++ T F+V +VT + R K + Sbjct: 661 IELRVLAHIAGDEKLIKAFKEDTDIHTQTAMDVFHVESDEVTSNMRRQAKAVNF------ 714 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G++ + Sbjct: 715 --------GIVYGISDYGLSQ------------------------------NLGITRKEA 736 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 ++ + + + V +E+ Q + + + Sbjct: 737 KKFIERYFNSYPGVKTYMDEIVQEAK--------------------------HKGFVSTI 770 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620 R D+ + + + R +Q + DI+ + M++ Sbjct: 771 MKRRRYLPDITSRNFNMRSF---AERTAMNTP------IQGSAADIIKKAMIDLDHRLKE 821 Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 +++L VHDE++ E P+ + + +M + +PLK + K + Sbjct: 822 ENLQANVLLQVHDELILEAPENEIDKLKEIVPDVMENTVE--LDVPLKVDYSFGKSW 876 >gi|312109948|ref|YP_003988264.1| DNA polymerase I [Geobacillus sp. Y4.1MC1] gi|311215049|gb|ADP73653.1| DNA polymerase I [Geobacillus sp. Y4.1MC1] Length = 878 Score = 334 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 89/655 (13%), Positives = 195/655 (29%), Gaps = 125/655 (19%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 ++ FA + + + + LE+ + LK + + Sbjct: 334 ILGFAIA--NEHGNFFIRTDTALSSSLFTTWLEDESKKKSVFDGKRAIVSLKWQ-GVHLR 390 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + L+ + + + V K + E + + KG + ++ Sbjct: 391 GIQ-FDLLIASYLLNPSQSTEDVASIAKTKQYAGVQSDEAV--YGKGAKQKVPDEQVLAE 447 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 H + + ++ + E L + + G VDV + + Sbjct: 448 HLVRKAAAIRALEQGFIHDLQENEQYSLFTDLELPLSTILAEMEFAGVKVDVERLKEMGE 507 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266 + + +++QE+ L + ++L LF + L + T+ +T VL Sbjct: 508 ELAEQLKEVEQEIYRLAGQ-EFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSAEVLEKL 566 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 ++ + R + + L++ ++ D T+ ++TGR S Sbjct: 567 APQHEIVEKILHYRQ-LGKLQSTYIEGLLKVVHRDTNKVHTIFNQALTQTGRLSSTEPNL 625 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIE 385 QN+P + +R I + AD + IE Sbjct: 626 QNIPIRLEEGRK-------------------------IRQAFIPSEPDWVIFSADYSQIE 660 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RVLA +A ++ + AF G D++ T F+V+ +VT + R K + + Y Sbjct: 661 LRVLAHIANDENLIDAFRHGLDIHTKTAMDIFHVSKEEVTPNMRRQAKAVNFGIVYGIS- 719 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + LN+ E + + + + + + + Sbjct: 720 ----DYGLSQNLNITRKEAAEFIKRYFEIFPGVKQYMKDIVQEAKQKGYVTTL------- 768 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 +RR +P + + Sbjct: 769 ----------------------------------LHRRRYLPDITSRNFNLRSF------ 788 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620 R+ +NT +Q + DI+ + M++ +K Sbjct: 789 ---------AERTAMNT------------------PIQGSAADIIKKAMIDLSKRLQKEN 821 Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P + + +M + +PLK + + + Sbjct: 822 MKARMLLQVHDELILEAPKDEIERLQQIVPEVMENAVQ--LRVPLKVDYHFGPTW 874 >gi|308174603|ref|YP_003921308.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7] gi|307607467|emb|CBI43838.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7] gi|328554526|gb|AEB25018.1| DNA polymerase I [Bacillus amyloliquefaciens TA208] gi|328912932|gb|AEB64528.1| DNA polymerase I [Bacillus amyloliquefaciens LL3] Length = 879 Score = 334 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 92/691 (13%), Positives = 194/691 (28%), Gaps = 140/691 (20%) Query: 6 IDFETR---------SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP-- 54 ID ET SP L I + ++ F+ ++ + Sbjct: 302 IDVETVEEITEDMLVSPSALVVEQIGDNYHEEPILGFSI-VNETGLYYIP---KETAIQS 357 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K E+ +S R+V+ +++ L+ A ++ V Sbjct: 358 EAFKSWAEDESKKKWVFDSK--RSVVALRWQGIELKGTE-FDALLAAYIINPGNSYDDVA 414 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 K + + A + KG H ++ +H + + + Sbjct: 415 SVAK--EYGLNIVSKDEAVYGKGAKHAVPAEKELADHLARKAAAVNSLRDKLLHALKENN 472 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 +LE E L + + G VDV + + + + + ++++ + + Sbjct: 473 QLELYEDLELPLALILGEMESMGVKVDVERLKRMGEELRAKLKEYEEKIHDIAG-EPFNI 531 Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF + GL + T+ +T VL + R + Sbjct: 532 NSPKQLGVILFDKLGLPVVKKTKTGYSTSADVLEKLADKHDIVAYILQYRQ-IGKLQSTY 590 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L++ D T ++TGR S QN+P + Sbjct: 591 IEGLLKVTRKDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRK------------ 638 Query: 351 TSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R + + AD + IE RVLA ++ ++ ++AF D++ Sbjct: 639 -------------IRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIH 685 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T F+V+ +VT+ R K + G++ + Sbjct: 686 TKTAMDVFHVSEDEVTQAMRRQAKAVNF--------------GIVYGISDYGLSQ----- 726 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + V ++ + Sbjct: 727 -------------------------NLGITRKEAGAFIDRYLESFPGVKAYM---EESVQ 758 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + + G + R ++ + R Sbjct: 759 EAKQKGYVTTLMQ-----------------------RRRYIPELTSRNF---NLRSFAER 792 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN 643 +Q + DI+ + M++ ++L VHDE++ E P + Sbjct: 793 TAMNTP------IQGSAADIIKKAMIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIKI 846 Query: 644 ASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 L +M +PLKA+ + Sbjct: 847 LEKLVPEVMEHALD--LDVPLKADYASGPSW 875 >gi|125973403|ref|YP_001037313.1| DNA polymerase I [Clostridium thermocellum ATCC 27405] gi|256004380|ref|ZP_05429361.1| DNA polymerase I [Clostridium thermocellum DSM 2360] gi|125713628|gb|ABN52120.1| DNA polymerase I [Clostridium thermocellum ATCC 27405] gi|255991664|gb|EEU01765.1| DNA polymerase I [Clostridium thermocellum DSM 2360] gi|316940363|gb|ADU74397.1| DNA polymerase I [Clostridium thermocellum DSM 1313] Length = 894 Score = 333 bits (854), Expect = 5e-89, Method: Composition-based stats. Identities = 87/663 (13%), Positives = 185/663 (27%), Gaps = 131/663 (19%) Query: 29 CVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + A + D + + + K+ LE+ ++ H+ V Sbjct: 341 KLAAIAISPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKKYGHDLKN-FIVYLNNRG 399 Query: 86 LDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +D T++ A + + + S K E EL + + + Sbjct: 400 IDFNGLA-FDTMIGAYIINPSKETYTISELAQEYLNLSVKAVE--ELAGKGKSFTLFKDM 456 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 + + + + E L + G+ V+V Sbjct: 457 QPDVLSKTVGVYPHVISKVSRKIDSLLKENNQERLYYDIELPLVRTLADMEYYGFKVNVD 516 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 ++ + + + +E+ +L + ++L LF + GL + T+ +T Sbjct: 517 ALVEFSKELQEKIDVVTKEIYTLAG-EEFNINSPKQLGVILFEKLGLPIIKKTKTGYSTD 575 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGR 318 VL ++ R + L+ +N G++ + + TGR Sbjct: 576 AEVLEELSDRHEIVEKILEYRQ-LVKLKSTYAEGLLAVINPYTGKIHSSFNQ-TVTATGR 633 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLV 377 S QN+P + +R I E L+ Sbjct: 634 ISSTEPNLQNIPIKLEMGRK-------------------------IRKVFIPSDENYLLL 668 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA + ++ + AF ED++ +T A F + +VT R+ K + Sbjct: 669 DADYSQIELRVLAHITNDENMINAFLNNEDIHTSTAASVFGIPKEEVTPLMRSRAKAVNF 728 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + G+ + A + Sbjct: 729 GIV--------------YGIGDFSL------------------------------AKDLK 744 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + ++ V + +++ + ++ Sbjct: 745 ISRKEARAYIDGYLDRYPNVKKYMHDIVEEGKE--------------------------K 778 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 + R ++ + R +Q + DI+ M+ Sbjct: 779 GFVTTMFMRRRYLPELKSRNF---NIRSFGERVAMNTP------IQGSAADIIKIAMVKV 829 Query: 618 T------KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYES 670 K ++L VHDE++ ET ++ + M + S +PL E Sbjct: 830 HGELKKRKLKSRLILQVHDELIVETFKDEKEEVEKILLEGMQNAVS--LKVPLVVEIKSG 887 Query: 671 KRY 673 + Sbjct: 888 SNW 890 >gi|261408692|ref|YP_003244933.1| DNA polymerase I [Paenibacillus sp. Y412MC10] gi|261285155|gb|ACX67126.1| DNA polymerase I [Paenibacillus sp. Y412MC10] Length = 886 Score = 333 bits (854), Expect = 5e-89, Method: Composition-based stats. Identities = 90/690 (13%), Positives = 183/690 (26%), Gaps = 161/690 (23%) Query: 9 ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-WDCVHDPVMPQVLKEALENTDVT 67 ET VI A ++ L +D + + ++ L ++++ Sbjct: 329 ETHGDNP----------HHADVIGLALATEERQYFLPFDVLKSEEA-EPVRAWLADSEIP 377 Query: 68 IVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQ 121 ++ + + + A + L + L Sbjct: 378 KRG----YDLHRIDLALHWQGIAFAGAA-FDVHLAAYLLDPTESNQTLSGLASKYGL--- 429 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV-------TVTREIFKR 174 A E + K E V + Sbjct: 430 ---------AYLQADEDVFGKGAKYKVPDVEKLSEHMARKCLAVSELVPIQEKELAANEM 480 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 L E L + + +G V+ L + + + KL QE+ + + Sbjct: 481 LPLFHDLEMPLSRILADMEKQGIAVNAEDLKELGREFEGQIAKLVQEIYEIAGT-EFNLN 539 Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF++ L + T+ +T VL + R ++ + Sbjct: 540 SPKQLGEILFVKLELPVIKKTKTGYSTDAEVLEKLAPYHDIVRLILQYR-TLAKLQSTYV 598 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++ ++S T + TGR S QN+P +L Sbjct: 599 EGLLKEISSVTGKVHTYYRQTIAATGRLSSQYPNLQNIPIRLEEGRKL------------ 646 Query: 352 SDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 R + G ++ AD + IE RVLA ++ ++ +AF D++ Sbjct: 647 -------------RKVFVPSEPGWSILAADYSQIELRVLAHISDDERLKEAFVHDMDIHT 693 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T F V +V + R K + + G++ + Sbjct: 694 KTAMDVFGVGMDEVDSNMRRSAKAVNFGIV--------------YGISDYGLSQ------ 733 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + + V + + + +Q Sbjct: 734 ------------------------NLNITRKEAAAFIDQYFEVFQGVRRYMDVIVKQAKQ 769 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + + R ++ + R Sbjct: 770 --------------------------DGYVKTLLERRRYLPEINASNF---NLRSFAERT 800 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ M++ KA ++L VHDE+V E P+ + Sbjct: 801 AMNTP------IQGTAADIIKLAMVHMDKALHERQLKSRMLLQVHDELVFEVPEDELEVM 854 Query: 645 SMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 L +M+ +PLK+E + + Sbjct: 855 KELVPDVMSQALK--LSVPLKSEVSYGENW 882 >gi|281417605|ref|ZP_06248625.1| DNA polymerase I [Clostridium thermocellum JW20] gi|281409007|gb|EFB39265.1| DNA polymerase I [Clostridium thermocellum JW20] Length = 894 Score = 333 bits (854), Expect = 6e-89, Method: Composition-based stats. Identities = 97/670 (14%), Positives = 195/670 (29%), Gaps = 145/670 (21%) Query: 29 CVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + A + D + + + K+ LE+ ++ H+ V Sbjct: 341 KLAAIAISPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKKYGHDLKN-FIVYLNNRG 399 Query: 86 LDIPIHRWICTLVLARSNGLP---SALKAVG-EALKLSSQKMEEGKELIARFCKGETHEC 141 +D T++ A + + E L LS K + KG++ Sbjct: 400 IDFNGLA-FDTMIGAYIINPSKETYTISELAQEYLNLS------VKAVEKLAGKGKSFTL 452 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLDQTINDR 195 D + G Y V+R+I L+ + E L + Sbjct: 453 FKDMQPD---VLSKTVGVYPHVISKVSRKIDSLLKENNQERLYYDIELPLVRTLADMEYY 509 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G+ V+V ++ + + + +E+ +L + ++L LF + GL + T Sbjct: 510 GFKVNVDALVEFSKELQEKIDVVTKEIYTLAG-EEFNINSPKQLGVILFEKLGLPIIKKT 568 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFL 311 + +T VL ++ R + L+ +N G++ + Sbjct: 569 KTGYSTDAEVLEELSDRHEIVEKILEYRQ-LVKLKSTYAEGLLAVINPYTGKIHSSFNQ- 626 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA- 370 + TGR S QN+P +S +R I Sbjct: 627 TVTATGRISSTEPNLQNIPIKLE-------------------------MSRKIRKVFIPS 661 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 E L+ AD + IE RVLA + ++ + AF ED++ +T A F + +VT R+ Sbjct: 662 DENYLLLDADYSQIELRVLAHITNDENMINAFLNNEDIHTSTAASVFGIPKEEVTPLMRS 721 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + G+ + Sbjct: 722 RAKAVNFGIV--------------YGIGDFSL---------------------------- 739 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 A + + ++ V + +++ + ++ Sbjct: 740 --AKDLKISRKEARAYIDGYLDRYPNVKKYMHDIVEEGKE-------------------- 777 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + R ++ + R +Q + DI+ Sbjct: 778 ------KGFVTTMFMRRRYLPELKSRNF---NIRSFGERVAMNTP------IQGSAADII 822 Query: 611 AEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 M+ K ++L VHDE++ ET ++ + M + S +PL Sbjct: 823 KIAMVKVHGELKKRKLKSRLILQVHDELIVETFKDEKEEVEKILLEGMQNAVS--LKVPL 880 Query: 664 KAEGYESKRY 673 E + Sbjct: 881 VVEIKSGSNW 890 >gi|120434510|ref|YP_860207.1| DNA polymerase I [Gramella forsetii KT0803] gi|117576660|emb|CAL65129.1| DNA polymerase I [Gramella forsetii KT0803] Length = 942 Score = 333 bits (854), Expect = 6e-89, Method: Composition-based stats. Identities = 101/696 (14%), Positives = 204/696 (29%), Gaps = 150/696 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 ++ D ET S L D ++ AF ++ + + + L Sbjct: 369 KSVCFDTETTSLNTL----------DAELVGIAFSWEAGKGFYLPFPEEKKEAQKLIEEL 418 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE- 114 + EN + + N ++ VL +D+ T++ + + E Sbjct: 419 RNFFENDKIEKIGQNLKYDIKVLDKY-KIDVK-GALFDTMIAHYLINPDMRHNMDVLAET 476 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L + Q + E LI + A EY D +T ++ Sbjct: 477 YLNYTPQPISE---LIGK---------KGKNQGSMRDVALDKQTEYAVEDADITFQLKNL 524 Query: 175 LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E + + L + + G +D +L++ + + L+ ++ Sbjct: 525 FEKELEEAETRKLFNEIEIPLVEVLADMELEGIKLDEEYLKSLSEALASDIKDLETKIYE 584 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 ++L LF + L T+ +T + VLSS + V + Sbjct: 585 AAG-EEFLISSPKQLGIILFEKMELSKKPKKTKTGQYSTSEDVLSSLAEENDIVQHVLDY 643 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + ++ L + T + TGR S QN+P + + Sbjct: 644 R-GLVKLQNTYVDALPNQVERTTGRVHTDYVQTTAATGRLSSNNPNLQNIPIRTERGK-- 700 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398 VR + E L+ AD + IE R++A ++ E+ Sbjct: 701 -----------------------QVRKAFVPRDENYVLLAADYSQIELRIIAALSNEENM 737 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++AF+ GED++ +T A+ FNV +VT++QR+ K + + Y A + + Sbjct: 738 IQAFKDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSA-----FGLSNQTS 792 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 L+ ++ + + NF E E+ +G R K +++ V Sbjct: 793 LSRSESKELIDTYYKTYPKLSNFIADQVEFARENGHVSTVLGR--RRYLKDINSRNAIVR 850 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + G A L ++ Sbjct: 851 G---AAERNAVNAPIQGSAADII-------------------------KLAMINIHKKLK 882 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 N T+ ++ +V + Sbjct: 883 EENYKTKM---------------------------LLQVHDE-----------LVFDAHK 904 Query: 639 TDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + + +PL + K + Sbjct: 905 DELEKVQKMIKSEMENA--YKLEVPLDVDLGVGKNW 938 >gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1] gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1] Length = 898 Score = 333 bits (853), Expect = 7e-89, Method: Composition-based stats. Identities = 104/708 (14%), Positives = 203/708 (28%), Gaps = 179/708 (25%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53 + D ET ++ F+F + H Sbjct: 330 VAFDTETTGLD----------TRTDKMVGFSFCTSNEKAYYVPVGHSYLGVEEQVDPEDA 379 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111 LK+ + IV N F+ ++L + ++ + + T+++A S L + Sbjct: 380 VAALKKLM---KQKIVGQNLKFDLSLLYNQYGME-EVLPFADTMIMAWLTDPGSRVGLDS 435 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + K M+ KE++ + + Y D +T + Sbjct: 436 LAQ--KFFKYDMKPFKEMVK-------------KGENFSHVNIADATFYAAEDAWMTFLL 480 Query: 172 F-------------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + L+ E + + G VD TL + + + +L Sbjct: 481 YGAIKKKMELSSLTHLLKEAKDVEYPFINVLIRMERLGIKVDQVKLETLKKTLSEDLHRL 540 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQ 275 E+ L+ + R ++L LF GL T+ +T + VL S K P + Sbjct: 541 TSEIHELSGS-EFNIRSTQQLGVVLFQHLGLKGGKKTKTGYSTNEAVLQSLKHEHPVIGK 599 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + R + + L++ D R+ + G + TGR S QN+P S Sbjct: 600 ILEYR-EYHKMLSTYVEPLLKLAKKDEKSRIYTSFIQTG-TATGRLSSKDPNLQNIPVRS 657 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + VR +A EG KLV D + IE R+LA + Sbjct: 658 -------------------------TLGRSVREAFVAKEGYKLVSIDYSQIELRLLAHFS 692 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + ++AF G D+++ T + F + K +R K + Sbjct: 693 KDAALMEAFNKGTDIHMATAVKLFG---EEEAKAKRNFAKSVNF--------------GL 735 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + + E + + + Sbjct: 736 LYGMGP------------------------------KKLSDELGITSAEAKEIIANYFAS 765 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 V + + + I+ + ++RR Y + Sbjct: 766 FPTVKNFLEGIQERVK--IDGYVETLLKRRRIFD----------------------YENA 801 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLT 627 + Y + + Q + D++ M + ++L Sbjct: 802 NGMQK------------AAYMRESVNTVFQGSAADLIKLSMNDIDSMIIDEALEAHMLLQ 849 Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 +HDE++ E + H+M W +PL + Sbjct: 850 IHDELIFEIREDQVEKISKRFVHVMEHI--WELEVPLVCSVSVGDSWG 895 >gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS] gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS] Length = 903 Score = 332 bits (852), Expect = 9e-89, Method: Composition-based stats. Identities = 107/679 (15%), Positives = 204/679 (30%), Gaps = 134/679 (19%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELW------DCVHDPVMPQV----LKEALENTD 65 L G + A D + A + L L + Sbjct: 336 LAVSGTPEEAMDARLTALALSSAAGDACFVLAEFIGSASEGQMFATEGHSGLAALLGDKK 395 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125 ++ AHN+ + +L + ++ T++ A G K + + E Sbjct: 396 MSKTAHNAKYLMNLLLSA-GQEVKGLD-FDTMIAAHLLGE----KNLAIKDLVFEHFGIE 449 Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185 ++ + + + + KG + ++ + E L Sbjct: 450 IADIENILTRNGKKTIFNEVQLSEAAQLAADYTFRLKGIFAAQLAETRLMDLFARVEMPL 509 Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 + + G +D L + + + KL++++ + + ++L LF Sbjct: 510 LPILLGMERIGIMLDTDLLKAMAEKTGRQIFKLEEDIYAQAGHS-FNIGSPQQLGRILFD 568 Query: 246 ETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 E L + T+ +T VL + + R + L+TL +N Sbjct: 569 ELKLPVIKKTKTGYSTGAEVLEELQGKHRIVDLILEYR-MLVKLKSTYLDTLPRMVNPHT 627 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 R T + TGR S QN+P E Sbjct: 628 RRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGRE------------------------ 663 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R IA G L+ D + I+ RVLA ++ + ++AF++ +D++ T AR NV+P+ Sbjct: 664 -IRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQDIHTATAARLLNVSPS 722 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VTK+QR + K + + G++ + Sbjct: 723 KVTKEQRRLAKTVNFGVI--------------YGMSSYGLEQATE--------------- 753 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 ++ KA+ +K+ RV+ + E+ Q Sbjct: 754 ---------------LSLEEADKFIKAYFEKYPRVAVYFAEIKQQART------------ 786 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 + GR ++ + R V Sbjct: 787 --------------QGYVETLLGRRRYIPEINSPN---RILRESAERMAINMP------V 823 Query: 603 QAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNP 655 Q S DI+ M+ K ++L VHDE++ E P + +L M+ Sbjct: 824 QGTSADIIKLAMVRLDEKIKEEKLKSRLLLQVHDELIFEVPTAELGRMSDLLIETMSGAV 883 Query: 656 SWAKGLPLKAEGYESKRYR 674 A +PLK E + Sbjct: 884 --AFEIPLKVELKSGANWG 900 >gi|329929159|ref|ZP_08282945.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5] gi|328936836|gb|EGG33271.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5] Length = 886 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 89/690 (12%), Positives = 183/690 (26%), Gaps = 161/690 (23%) Query: 9 ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-WDCVHDPVMPQVLKEALENTDVT 67 ET VI A ++ L +D + + ++ L ++++ Sbjct: 329 ETHGDNP----------HHADVIGLALATEERQYFLPFDVLKSEEA-EPVRAWLADSEIP 377 Query: 68 IVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQ 121 ++ + + + A + L + L Sbjct: 378 KRG----YDLHRIDLALHWQGIAFAGAA-FDVHLAAYLLDPTESNQTLSGLASKYGL--- 429 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV-------TVTREIFKR 174 A E + K + V + Sbjct: 430 ---------AYLQADEDVFGKGAKYKVPDVDKLSEHMARKCLAVSELVPIQEKELAANEM 480 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 L E L + + +G V+ L + + + KL QE+ + + Sbjct: 481 LPLFHDLEMPLSRILADMEKQGIAVNAEDLKELGREFEGQIAKLVQEIYEIAGT-EFNLN 539 Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF++ L + T+ +T VL + R ++ + Sbjct: 540 SPKQLGEILFVKLELPVIKKTKTGYSTDAEVLEKLAPYHDIVRLILQYR-TLAKLQSTYV 598 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++ ++S T + TGR S QN+P +L Sbjct: 599 EGLLKEISSVTGKVHTYYRQTIAATGRLSSQYPNLQNIPIRLEEGRKL------------ 646 Query: 352 SDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 R + G ++ AD + IE RVLA ++ ++ +AF D++ Sbjct: 647 -------------RKVFVPSEPGWSILAADYSQIELRVLAHISDDERLKEAFVHDMDIHT 693 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T F V +V + R K + + G++ + Sbjct: 694 KTAMDVFGVGMDEVDSNMRRSAKAVNFGIV--------------YGISDYGLSQ------ 733 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + + V + + + +Q Sbjct: 734 ------------------------NLNITRKEAAAFIDQYFEVFQGVRRYMDVIVKQAKQ 769 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + + R ++ + R Sbjct: 770 --------------------------DGYVKTLLERRRYLPEINASNF---NLRSFAERT 800 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ M++ KA ++L VHDE+V E P+ + Sbjct: 801 AMNTP------IQGTAADIIKLAMVHMDKALHERQLKSRMLLQVHDELVFEVPEDELEVM 854 Query: 645 SMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 L +M+ +PLK+E + + Sbjct: 855 KELVPDVMSQALK--LSVPLKSEVSYGENW 882 >gi|308068368|ref|YP_003869973.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681] gi|305857647|gb|ADM69435.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681] Length = 884 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 93/684 (13%), Positives = 178/684 (26%), Gaps = 149/684 (21%) Query: 9 ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-LWDCVHDPVMPQVLKEALENTDVT 67 ET ++ F D + ++ L + + Sbjct: 327 ETHGDNP----------HHADIVGLIFAATGQQFFMTLDVLQSDAAT-PIRAWLADPERK 375 Query: 68 IVAHNSYFERT----VLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSS 120 H + L ++ + L + LSS Sbjct: 376 KRGH----DLHRTDLALHWH-GIEFAGAE-FDVQLAGYLLDPTDANQTLSGLAAKYGLSS 429 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 + +E F KG ++ +H E E + + Sbjct: 430 IRPDE-----EVFGKGAKYKVPDVDVLSDHVARKAAVIEALVPVQQAELEKTEMHKLFHE 484 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L + + +G V+V L + + + L E+ S+ + ++L Sbjct: 485 LEMPLSRILADMEKQGVLVNVEELRALGKEFEAQIATLVSEIYSIAGV-EFNLNSPKQLG 543 Query: 241 TWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + GL + T+ +T VL + R ++ + L++ Sbjct: 544 EILFDKLGLPVIKKTKTGYSTDAEVLEKLAPYHDIVQNILQYR-TIAKLQSTYVEGLLKE 602 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 ++ T + TGR S QN+P + Sbjct: 603 ISGKTGKVHTYFRQTVAATGRLSSQFPNLQNIPIRLEEGRK------------------- 643 Query: 358 QIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R + G ++ AD + IE RVLA ++ ++ +AF D++ T + Sbjct: 644 ------IRKVFVPSEPGWSILAADYSQIELRVLADISDDERLKEAFVHDMDIHTKTASDV 697 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F VA V + R K + G++ + Sbjct: 698 FGVAAEDVDSNMRRSAKAVNF--------------GIVYGISDYGLSQ------------ 731 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 R + V +++ + +G Sbjct: 732 ------------------NLNITRKEAARFIDQYFDVFQGVRRYMDDI---VKDAKRDGY 770 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 + R ++ + R Sbjct: 771 VKTLLE-----------------------RRRYLPEINASNF---NLRSFAERTAMNTP- 803 Query: 597 LTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLY-H 649 +Q + DI+ M+ K ++L VHDE+V E P + L Sbjct: 804 -----IQGTAADIIKLAMVQMDKVLRERNLRSRMLLQVHDELVFEVPPEEMETMKELVPA 858 Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673 M + A +PLKAE + Sbjct: 859 TMEAALELA--VPLKAEVSYGSNW 880 >gi|307721272|ref|YP_003892412.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294] gi|306979365|gb|ADN09400.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294] Length = 907 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 99/708 (13%), Positives = 201/708 (28%), Gaps = 177/708 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPV 52 + D ET + + ++ F+F F+D H V Sbjct: 338 IVAFDTETTGLDYI----------NNKLVGFSFSFNDEEAYYVPFGHFYLGVADQVSKDV 387 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110 Q ++ + +V HN F+ + + + +++LA +L Sbjct: 388 AKQAMRRIFNSK---VVGHNIKFDLHFVTRFLEEK-DLPVYCDSMILAWLINPESALSLD 443 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + + L G E++ + + Y D +TR+ Sbjct: 444 KLSDKL--------LGHEMVHFKD-------TVKKGENFSTVELDDACVYAAEDAFITRK 488 Query: 171 IF-------------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 ++ +E + E + + + G VD V Sbjct: 489 LYKLFLKKLELQDATHLIEEAKTVEIPFMHTLLKMEEEGIEVDTGFLEKFLVEVKETLEY 548 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI 274 L + + L + ++L LF + GL + T+ +T ++VLSS K P Sbjct: 549 LTKSIYELAGS-EFNINSTQQLGNILFEKLGLPVGKKTKTGYSTNEKVLSSLKDKHPIIP 607 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRPS 333 ++ R + ++ L++ N D + R F + TGR S QN+P + Sbjct: 608 KLLEYR-EVHKLYSTYIDPLLKLANEDEQHRIHTSFVQTGTATGRLSSKNPNLQNIPTRT 666 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + +R +A EGKK + D + +E R+LA + Sbjct: 667 P-------------------------LGAKIRRGFVAGEGKKFIGIDYSQMELRLLAHFS 701 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + + AF +D+++ T F + +R I K + L Y G Sbjct: 702 QDPVLVNAFMHDKDIHLQTAIVLFG---EEEAAHKRNIAKTVNFGLLYGMGP-------- 750 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + + + + + + Sbjct: 751 ------------------------------------KKLSDTLGITTKEAKEIIEKYFES 774 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 V + + ++ ++ + GR + Sbjct: 775 FHTVKAYFRSIVESSKE--------------------------KGYVETLLGRRRYFDYE 808 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLT 627 Y Y + ++ Q D++ M K ++L Sbjct: 809 NATPMYR----------AAYERESVNSVFQGSVSDVIKLSMNKIHTIINEEKLQAKMLLQ 858 Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 +HDE++ E + +M +PLKA + Sbjct: 859 IHDELIFEVDEKVADELGNRFRDIMDHIVE--LNIPLKASLNIGDNWG 904 >gi|15615715|ref|NP_244019.1| DNA polymerase I [Bacillus halodurans C-125] gi|10175775|dbj|BAB06872.1| DNA polymerase I [Bacillus halodurans C-125] Length = 876 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 90/660 (13%), Positives = 191/660 (28%), Gaps = 127/660 (19%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERTVLKACF 84 ++ A ++ D + + L + L++ ++ L Sbjct: 328 HQGDILGLAIAHNNG-CYYIPT--DEALRSEALIQWLKDERKEKWLFDAKRAVVALGW-K 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 N+++ + + ++ V + K + E A + KG + Sbjct: 384 NIELA-GSTFDLQMASYLLDPSTSFHEVSDVTKH--HRKGHVHEDEAVYGKGAKRRIPDE 440 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 + H K V + ++L + E L + + G VDV Sbjct: 441 KELGEHLARKADAIFQLKEHVEEKLKENEQLGLFNELEMPLSVILGRMETTGVKVDVEQL 500 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + ++ +L+Q + L + ++L LF + L + T+ +T Sbjct: 501 EQMGEDLNARLEELEQTIHELAGVS-FNINSPKQLGEILFEKLQLPVIKKTKTGYSTSAD 559 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + ++ L++ ++ T ++TGR S Sbjct: 560 VLEKLAGQHEIIDHILHYRQ-LGKLNSTYIDGLLKVVHKGTGKVHTRFNQALTQTGRLSS 618 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVAD 380 QN+P + +R + SE ++ AD Sbjct: 619 TDPNLQNIPIRLEEGRK-------------------------IRKAFVPSEKDWFILAAD 653 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA A ++ ++AF D++ T F+V+ +VT + R K + + Sbjct: 654 YSQIELRVLAHFAEDEKLMEAFREDMDVHTKTAMDVFHVSQEEVTSNMRRSAKAVNFGIV 713 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + + + + + + E Sbjct: 714 YGIS-----DYGLSQNLGITRKEAATFIERYFASYPKVKEYLDHVIDEAREKGYVTTL-- 766 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 ++RR +P + + Sbjct: 767 ---------------------------------------LKRRRYLPDLTSRNFNQRSF- 786 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA--- 617 R+ +NT +Q + DI+ + M+ Sbjct: 787 --------------AERTAMNT------------------PIQGTAADIIKQAMVQMASR 814 Query: 618 ---TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P + L +M +PLK + + Sbjct: 815 MDEEDLQSRLLLQVHDELIFEVPKEEVAQMKELVTSVMEQAVE--LRVPLKVDVACGDTW 872 >gi|237752927|ref|ZP_04583407.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430] gi|229375194|gb|EEO25285.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430] Length = 889 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 100/700 (14%), Positives = 202/700 (28%), Gaps = 166/700 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVL 57 + D ET + L ++ F+F D H + + L Sbjct: 324 IVSFDTETTNLDVLC----------AKIVGFSFSLDGINAYYAPIAHSYLGVPEQISKEL 373 Query: 58 KEALENT---DVTIVAHNSYFERTVLKACFNLDIP-IHRWICTLVLARSN--GLPSALKA 111 N+ ++ HN ++ +L FN H +++LA +P L Sbjct: 374 ALEFINSLFNAKVVIGHNLKYDLEILHTNFNFTPKSYHNIKDSMLLAWLYQSDMPCNLDD 433 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + M K++I + + + Y D ++ Sbjct: 434 LMARY--FKHTMIAFKDIIK-------------KGENFSQLPIENAFTYACEDAAACYQL 478 Query: 172 FKRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 F ++ L K + G +++ L + + L QE+ Sbjct: 479 FFKINSLLPKSLQEVANNVEFPFIQCLVNMELSGTKINIKYFKNLKSEMTEKLQALSQEI 538 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNN 279 +L + ++L LF E L T++ T VL+S + P +V Sbjct: 539 YTL-ANKRFNLNSPQQLSIVLFEELNLQSGKKTKSGLSTNSSVLNSLRDSHPIIPKVLEY 597 Query: 280 RMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R + + L+E + ++ + G + TGR S QN+P ++ Sbjct: 598 R-ELFKLYSTYIEPLIELASQDPAHKVYTSFMQTG-TSTGRLSSKNPNLQNIPVKTQQGR 655 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R IA EG L+ D + IE R+LA + + Sbjct: 656 R-------------------------IREGFIAQEGHLLLSLDYSQIELRLLAHFSQDSA 690 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF D+++ T + F ++ +++R++ K + L Sbjct: 691 MIEAFHKEADIHLETAKKIFG---EELAQEKRSVAKSINFGLI----------------- 730 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + + + + Q V Sbjct: 731 ---------------------------YGMGARKLSETLQINHQEAKSYIQNYFQSFPTV 763 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 E + + + + R +++ + L Sbjct: 764 KNFLKEQEEFILK--NGYSLTLLGRMRKFSFENIQEFQKVAFLR---------------- 805 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA--TKAGYDIVLTVHDEIVCE 635 + I Q + DI+ M+ K ++L +HDE++ E Sbjct: 806 ------------------EGINAIFQGSAADIIKLAMIQITQEKLESKLLLQMHDELIFE 847 Query: 636 TPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 P E A + +M S + +PL+ + Sbjct: 848 APKNIAETEAKKIAQIMESITT--LRVPLRCGVSLGANWG 885 >gi|154494277|ref|ZP_02033597.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC 43184] gi|154085961|gb|EDN85006.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC 43184] Length = 940 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 95/695 (13%), Positives = 180/695 (25%), Gaps = 148/695 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----HDPVMPQVL 57 D ET L ++ +F ++ + Sbjct: 367 DFFAFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPAAREEADKILAHF 416 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 AL+N + N F+ V++ + I T++ + + E Sbjct: 417 SPALQNPKSLKIGQNIKFDILVVRKY-GIRIA-GPLFDTMIAHYLLNPELRHGMDYLAET 474 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 K +ELI + EY D +T ++ Sbjct: 475 Y--LKYKTVRIEELIG---------PRERKQLTMRDVPVVQVAEYAAEDADITLKLKNYF 523 Query: 176 EPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P E L Y+ + G +D ++ + KL++E+ L Sbjct: 524 TPCLEKEGLESLFYDIEMPLIYVLAEMEYTGVTLDTVALKQSSEELTTALKKLEKEIYEL 583 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280 + ++ LF + + T+ +T + +L + P ++ R Sbjct: 584 AGMK-FNINSARQVGEVLFDHLKIEEKARKTKTGSYSTSEEILEKMRSKHPVVGKLLEYR 642 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L E +N + T + TGR S QN+P E Sbjct: 643 -GLKKLLSTYIDALPELINPETGKIHTSYNQAVTSTGRLSSTNPNLQNIPVRDELGRE-- 699 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R A E AD + IE R++A ++ + + Sbjct: 700 -----------------------IRKAFTAENEDCIFFSADYSQIELRIMAHLSQDAHMI 736 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF +G D++ T A+ + + +VT D R K + Y L++ Sbjct: 737 EAFRSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISV-----FGLAERLSI 791 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + D + E E + +R ++ V Sbjct: 792 PRAESKELIEGYFKTYPDIRAYMDESIEVAKEKGYVETIYKR--KRFLPDINSHNAIVRG 849 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G A K V + + + L S L D N Y Sbjct: 850 Y---AERNAINAPIQGSAADIIKVAMVRIFNRFETEG-----LKSKMILQVHDELNFNVY 901 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 DE+ Sbjct: 902 K-------------------------------------------------DEL------- 905 Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + M + +PL A+ E + Sbjct: 906 --EKVKQIVLDEMENAIK--LQVPLIADCGEGVNW 936 >gi|296273188|ref|YP_003655819.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299] gi|296097362|gb|ADG93312.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299] Length = 900 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 104/705 (14%), Positives = 211/705 (29%), Gaps = 173/705 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56 + D ET S + ++ F+F F+++ H + + Sbjct: 333 IVAFDTETTSLD----------TKIAKIVGFSFCFNENSAYYIPIAHSYLGAPEQVSIED 382 Query: 57 LKEALEN-TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG 113 K A+ + ++ N ++ ++K FN DI ++ + T++LA S L A+ Sbjct: 383 AKSAINKLNNFKLIVQNFKYDFDIIK--FNFDIELNLFADTIILAWLLDSSSKVGLDALA 440 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + M K+++ + Y D +T +I+ Sbjct: 441 K--NYFDHTMIAFKDVVKKGD-------------DFSTVDISNACNYAAEDALMTYKIYF 485 Query: 174 RLEPL-------------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +L + E + + + + G +D + L +L + Sbjct: 486 KLLEEFKKQNCEHLLKIANDYEFKFIDVLINMQNNGVKIDTQILKNLKIQNQEYIQELTK 545 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277 ++ L + ++L LF GL + +T + VL+ + Sbjct: 546 KIHELAGTK-FNINSPKQLGVILFENLGLTASKKGKTGYSTNEVVLNKLVDSHEIIPVIL 604 Query: 278 NNRMRASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R A + + L+E ++D ++ + G + TGR S QN+P S + Sbjct: 605 DYR-EAYKLQSTYIEPLLELASNDSENKIYTSFLQTG-TATGRLSSKNPNLQNIPVKSSA 662 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 E +R IA +G KLV D + IE R+LA + + Sbjct: 663 GRE-------------------------IRKAFIARDGYKLVGIDYSQIELRLLAHFSKD 697 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF + D++ T + F + +R I K + L Sbjct: 698 KALVDAFNSDLDIHSQTAVKIFG---EEKASQKRNIAKTINFGLL--------------- 739 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + A + ++ + + Sbjct: 740 -----------------------------YGMGSKKLADTLKITPKEAKVYIDSYFEAFT 770 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V E + +ENG KRR + D Sbjct: 771 NVKEYMKSIEDFA---LENGYVETLIKRRRIF------------------------DFNA 803 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHD 630 + Y + Q + D++ M+ ++L +HD Sbjct: 804 ANTMQRIG---------YLREAVNTKFQGSAADLIKLSMIKIFEKYKNNEDLKMILQIHD 854 Query: 631 EIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E++ E + + + L +M + + +PLK + Sbjct: 855 ELIFEVKNEKQDEITNDLKKIMENIFT--LEIPLKVSVAVGNSWG 897 >gi|85003083|gb|ABC68603.1| DNA polymerase I [Geobacillus caldoxylosilyticus] Length = 878 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 88/649 (13%), Positives = 187/649 (28%), Gaps = 127/649 (19%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLK-EALENTDVTIVAHNSYFERTVLKACFNLDI 88 ++ FA + D + L LE+ + LK +++ Sbjct: 334 ILGFALANEHGHFF---IRTDTALSSPLFTAWLEDETKKKSVFDGKRAIVALKW-KGIEL 389 Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 L+ + + + V K + E + + KG ++ Sbjct: 390 RGIE-FDLLIASYLLNPSQSTEDVASVAKTKQYMAVQSDEAV--YGKGAKQTVPEEKALA 446 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 H + + + ++ + E L + + G VDV + Sbjct: 447 EHLVRKAAAIRALEKEFIHDLQENEQYALFTDLELPLSSILAEMEFTGVKVDVERLKEMG 506 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 + + + ++QE+ L + ++L LF + L + T+ +T VL Sbjct: 507 EELTEQLRAVEQEIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEK 565 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 ++ + R + + L++ ++ D T+ ++TGR S Sbjct: 566 LAPQHEIVEKILHYRQ-LGKLQSTYIEGLLKVVHCDTHKVHTIFNQALTQTGRLSSTEPN 624 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGI 384 QN+P + +R + + AD + I Sbjct: 625 LQNIPIRLEEGRK-------------------------IRQAFVPSKPDWVIFSADYSQI 659 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RVLA +A ++ + AF D++ T F+V +VT + R K + + Y Sbjct: 660 ELRVLAHIANDENLIDAFRHDLDIHTKTAMDIFHVTADEVTPNMRRQAKAVNFGIVYGIS 719 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 + LN+ E + + + + + + Sbjct: 720 -----DYGLSQNLNIPRKEAAEFIRRYFEIFPGVKQYMENIVQEAKQKGYVTTL------ 768 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 +RR +P + + Sbjct: 769 -----------------------------------LHRRRYLPDITSRNFNLRSF----- 788 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------T 618 R+ +NT +Q + DI+ + M++ Sbjct: 789 ----------AERTAMNT------------------PIQGSAADIIKKAMIDLADRLKQE 820 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 K ++L VHDE++ E P + + +M + +PL + Sbjct: 821 KLQARMLLQVHDELILEAPKEEVKRLQQIVPEVMENAIQ--LKVPLLID 867 >gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406] gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406] Length = 937 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 112/695 (16%), Positives = 210/695 (30%), Gaps = 150/695 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVL 57 D ET LT +++ +F ++ D + Q L Sbjct: 366 KQFAFDTETDGLNPLT----------ASIVVASFAPEEGEAYYLPLPQDFDEACAILQPL 415 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 + N+++ +A N+ F++ +L + TLV L + E Sbjct: 416 DALMRNSEILKMAQNAKFDQKLLARY-GVS-SATPLFDTLVAHYLIAPDQRHNLDTLAEQ 473 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 G IA E R+ L +Y D V R ++ L Sbjct: 474 Y--------LGYRTIAYSDLSEKKNFDLRRDVAE-----ELLVDYAAEDADVVRRLYPLL 520 Query: 176 EPLSSKEQE---LWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +EQ+ W ++ + G +DV H +++ + + + + + Sbjct: 521 REKLEQEQQEKLFWEVEMPLVGVLERMEREGVQLDVQRLHEVSEKLTNDLRETEDAIFHW 580 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF E GLH + T+ +T + VLS P ++ + R Sbjct: 581 AGHS-FNVSSPKQVGVVLFEELGLHAKGKKTKTNTYSTSEEVLSKCVDQHPIVQKILDYR 639 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + L E + DGRLR + + TGR S QN+P S Sbjct: 640 -GLKKLIGTYTEALPELVYPDGRLRTSYNQAV-TVTGRLSSSDPNLQNIPIRSA------ 691 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399 + +RS + + AD + IE R++A + ++ + Sbjct: 692 -------------------MGQEIRSAFVPRSSEFTFLSADYSQIELRLMAHFSQDEHLI 732 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 KAF GED++ +T AR +NVAP +VT QR+ K + Y A + LN+ Sbjct: 733 KAFVEGEDVHRSTAARIYNVAPEEVTPLQRSHAKTANFGIIYGISA-----YGLSQRLNI 787 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + +S E + + + + + +G R V + Sbjct: 788 DPSEASSLISSYFENYPAVRAYMDECVQKARKLGYTETLLGRRRYLPDINSRSA--TVRQ 845 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G A + Sbjct: 846 F---AERNAVNAPIQGTAADLI----------------------------------KVAM 868 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + + R + M+ + VHDE+ + Sbjct: 869 IRIDAKMRERN-------------------MKSRMI----------MQVHDELNFDAYLP 899 Query: 640 DEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + ++++ M +PL+ E + Sbjct: 900 EVDELRALVHQEMCQAIP-NLRVPLEVEIGVGSSW 933 >gi|218258588|ref|ZP_03474931.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii DSM 18315] gi|218225358|gb|EEC98008.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii DSM 18315] Length = 940 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 99/694 (14%), Positives = 183/694 (26%), Gaps = 146/694 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----HDPVMPQVL 57 D ET + ++ +F ++ + Sbjct: 367 DFFAFDTETDGIDPMK----------AGLVGMSFAVKENEAWYVPVPAAREEADKVLAHF 416 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 AL+N + N F+ V++ + I T++ + + E Sbjct: 417 SPALQNPKSFKIGQNIKFDILVVRKY-GIRIA-GPLFDTMIAHYLLNPELRHGMDYLAET 474 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 K +ELI + EY D +T ++ Sbjct: 475 Y--LKYKTVRIEELIG---------PKGRKQLCMRDVPIPQVAEYAAEDADITLKLKNYF 523 Query: 176 EPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P E L Y+ + G +D ++ + KL++E+ L Sbjct: 524 APCLDKEGLESLFYDIEMPLIYVLAEMEYTGVTLDTIALKQSSEELTTALKKLEKEIYEL 583 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280 + ++ LF + + T+ +T + +L + P ++ R Sbjct: 584 AGIK-FNINSARQVGEVLFDHLKIEEKAKKTKTGSYSTSEEILEKMRSKHPVVEKLLEYR 642 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L E +N + T + TGR S QN+P E Sbjct: 643 -GLKKLLSTYIDALPELINPETGKIHTSYNQAVTSTGRLSSTNPNLQNIPVRDELGRE-- 699 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R A E AD + IE R++A ++ + + Sbjct: 700 -----------------------IRKAFTAENEDCIFFSADYSQIELRIMAHLSQDAHMI 736 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF +G D++ T A+ + + +VT D R K + Y LN+ Sbjct: 737 EAFRSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISV-----FGLAERLNI 791 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + D + E E + +R ++ V Sbjct: 792 PRAESKELIEGYFKTYPDIRAYMDESIEVAKEKGYVETIYKR--KRFLPDINSHNAIVRG 849 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G A K V + + + L S L D N Y Sbjct: 850 Y---AERNAINAPIQGSAADIIKVAMVRIFNRFETEG-----LKSKMILQVHDELNFNVY 901 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + M IVL DE Sbjct: 902 -------------------------------KDEMEKVK----QIVL---DE-------- 915 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 M + +PL A+ E + Sbjct: 916 -----------MENAIQ--LQVPLIADCGEGVNW 936 >gi|212638359|ref|YP_002314879.1| DNA polymerase I [Anoxybacillus flavithermus WK1] gi|212559839|gb|ACJ32894.1| DNA polymerase I [Anoxybacillus flavithermus WK1] Length = 875 Score = 330 bits (846), Expect = 5e-88, Method: Composition-based stats. Identities = 92/652 (14%), Positives = 185/652 (28%), Gaps = 123/652 (18%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 F + + + K LE+ ++ LK +++ Sbjct: 332 VGFALVNERGHFFIPTDIALASSRFKRWLEDEQCKKSVFDAKRAIVALKWN-GIELKGVD 390 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 L+ A A V K + E + + KG H Sbjct: 391 -FDLLLAAYLLNPTDANGDVAAVAKTKQYTDVQSDEEV--YGKGAKQAIPPTNVLAEHLV 447 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 K + ++ E L E L ++ + G VDV + + Sbjct: 448 RKAKAIASLKETYIQELKRNEQFELLVHLELPLTFILAQMEFYGVKVDVDRLEQMGKEFT 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKL 269 + +++Q + L + ++L T LF + L + T+ +T VL Sbjct: 508 AQLEQIEQRIYELAGTT-FNINSPKQLGTILFEKLQLPIVKKTKTGYSTSADVLEKLAPY 566 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 Q+ + R + + L++ + D T+ ++TGR S QN+ Sbjct: 567 HEIIEQILHYRQ-LGKLQSTYVEGLMKVVRKDTGKVHTIFQQALTQTGRLSSTEPNLQNI 625 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARV 388 P + +R + S+ + AD + IE RV Sbjct: 626 PIRIEEGRK-------------------------IRQAFVPSSDDWVIFAADYSQIELRV 660 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A ++ + AF D++ T F+V +VT R K + + Y Sbjct: 661 LAHIANDENLIAAFHHDLDIHTKTAMDIFHVKEDEVTAHMRRQAKAVNFGIVYGIS---- 716 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 + L + + + + + ++ + Sbjct: 717 -DYGLSQNLGITRKEAAEFIERYFRSYPGVKRYMEEVVQDAKQKGYVTTL---------- 765 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 +RR +P + Sbjct: 766 -------------------------------LHRRRYLPDITSGNFNVRSF--------- 785 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGY 622 R+ +NT +Q + DI+ + M++ + Sbjct: 786 ------AERTAMNT------------------PIQGSAADIIKKAMIDLANRLHEERLQT 821 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P + + +M + S +PLK + + + Sbjct: 822 RLLLQVHDELILEAPKEEIELLKKIVPDVMENAVS--LRVPLKVDYHFGPTW 871 >gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58] gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58] Length = 928 Score = 330 bits (846), Expect = 5e-88, Method: Composition-based stats. Identities = 106/705 (15%), Positives = 191/705 (27%), Gaps = 157/705 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---------- 52 + +D ET D CG ++ + + H Sbjct: 345 VVAVDTETDML-DCVSCG---------LVGISLAVAPNAACYIPVGHGGTDMFAERPAQL 394 Query: 53 ----MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108 + LK LE+ V V N ++ TVL+ I + + T+V++ + Sbjct: 395 DKALVLAKLKPLLEDDAVLKVGQNLKYDMTVLRRH---GIEVVPYDDTIVMSFDLEAGKS 451 Query: 109 LKAVGEALKLSSQ-KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L + + G E I+ + EY D V Sbjct: 452 LSG----HGMDEAARQHLGHECISF----KDVVGTGKNQISFAEVPLPRATEYAAEDADV 503 Query: 168 TREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 T ++KR + + ++ L + + +G VD L+ Sbjct: 504 TLRLWKRFKARIANEGTNRVYELVDRPLVGVIAKMEHQGIKVDREALSRLSAEFTAGIAA 563 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKKLTPQA 273 L+ E+ + + ++L LF + G +T +L K Sbjct: 564 LETEIHEIAGQP-FAIGSTQQLGAILFDKMGYKGGKKGKSGAYSTDVTILEQLKAQGAPI 622 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + S+ + L +N D T L ++TGR S QN+P + Sbjct: 623 AAKVLEWRQLSKLKSTYTDALQAQINKDSGRVHTSYSLTGAQTGRLSSTDPNLQNIPIRT 682 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R +A G ++ AD + IE R+ A MA Sbjct: 683 EVGR-------------------------QIRHAFVAEPGHVILAADYSQIELRLAAHMA 717 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 +AF GED++ T + F +V ++ R K + A+ Y + Sbjct: 718 DVPALKEAFAAGEDIHAATAEQLFG----EVNRETRGRAKTINFAILYGIS-----RWGL 768 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + E + + E E + G W + Sbjct: 769 AGRLEISADEAQDMISRYYERFPGISIYINETIEKARERGYTETLFGRK------TWFPR 822 Query: 514 HSR-VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + +A G + KR V + L SG + Sbjct: 823 IKASIQHERQGAERAAINAPIQGTSADIIKRAMV------RMGPALEAAGLSGVRM---- 872 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 ++ + Sbjct: 873 -----------------------------------------LLQVHDE-----------L 880 Query: 633 VCETPDTDEFNASMLY-HLMTSN--PSWAKGLPLKAEGYESKRYR 674 V E P+ D AS + +M + P +PL E + Sbjct: 881 VFEVPEGDVDAASAVVRRVMETAAEPIVTLSVPLGVEIGTGPSWG 925 >gi|317051804|ref|YP_004112920.1| DNA polymerase I [Desulfurispirillum indicum S5] gi|316946888|gb|ADU66364.1| DNA polymerase I [Desulfurispirillum indicum S5] Length = 881 Score = 329 bits (844), Expect = 8e-88, Method: Composition-based stats. Identities = 104/697 (14%), Positives = 198/697 (28%), Gaps = 162/697 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMP--- 54 + ID ET S +A + ++ + H MP Sbjct: 317 VIAIDTETTSE----------HAVEADLVGISIAI-GEQAWYVPIDHAHTDTHRNMPTAD 365 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALK 110 Q L AL+ +D+ +V N ++ VL+ ++ +P R T++ + L Sbjct: 366 VQKLITALDRSDLLLVGQNIKYDLIVLQRH-DMALPQPRLFDTMIASYLLDANRRSHGLD 424 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + E+IA Y D +T Sbjct: 425 QLAVEF--------LSHEMIAFKDVVPKGS-------TFRDVDIPTAARYAGEDAAITLA 469 Query: 171 IFKRLEPLSSKE---------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P +E L + + G VD + L++ +L+++ Sbjct: 470 LYNLFAPRIEQEYHELFHAIEMPLVRVLCHMEMLGIAVDREMLGNLHESFTRRLHELEEK 529 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278 + L + ++L T LF + G+ T+ +T VL + + V Sbjct: 530 IYELAG-EAFNINSPKQLATLLFEKMGIPPVKKTKTGYSTDVSVLEALAPQY-EIANVLT 587 Query: 279 NRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 S+ +N L E +N GR+ + A+ TGR S QN+P + Sbjct: 588 QYRMVSKLLSTYVNALSELINPWTGRIHTSFNQTVAN-TGRLSSSDPNLQNIPIRTEEGR 646 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 E VR + + G V AD + IE R+ A ++G++ Sbjct: 647 E-------------------------VRKAFVPAPGFCFVAADYSQIELRIAAHLSGDES 681 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 LK+F +D++ T F + + R + K + + Y A + L Sbjct: 682 MLKSFAEEKDIHAQTADAIFGSSE----PNYRRMAKAVNFGILYGISAFKLSR-----DL 732 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + +S + + + EH G R+ + Sbjct: 733 GMTPKEGQALIDSYFLRYPGVKAYIDHQIAFAREHGYAQTLYGR---------RRYLPDI 783 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + +A E+ Sbjct: 784 NSRNRNIREAAER-------------------------------------------NAVN 800 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 + T+ + + QA ++ DE++ E P Sbjct: 801 MPIQGTSADIIKIAMNRIHQQLAPYQA-------RMLLQIH-----------DELLFEVP 842 Query: 638 -DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + E ++ L M S L + + Sbjct: 843 FEQAEPFSAFLQEQMESAAQLKVRLTVTV--SSGNNW 877 >gi|259502603|ref|ZP_05745505.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] gi|259169418|gb|EEW53913.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] Length = 470 Score = 329 bits (844), Expect = 8e-88, Method: Composition-based stats. Identities = 142/525 (27%), Positives = 229/525 (43%), Gaps = 70/525 (13%) Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + +T+++ P+ E E +++DQ INDRG +D L + + +V + Q + Sbjct: 1 MEITQKL--ECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKE 58 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 LT + +LK WL + G + L++ + ++L + T + Q+ R S Sbjct: 59 LTGLA--NPNSPLQLKDWLQQQ-GAKTDSLSKASVAQLLQT---TTGKVHQILALRQLLS 112 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 +S+V K + +AM DGR+ G LQF GA+RTGRW+G + QNLPR S E + + Sbjct: 113 KSSVKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARKLV 172 Query: 345 HLP---TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 ++S +R+ I S+ VAD + +EARV+AW++ E+W+ +A Sbjct: 173 KQGNVTALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEEWRQEA 232 Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F ED+Y + ++ F V + + R GK+ ELALGY G A + M +T Sbjct: 233 FAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATK---- 288 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + WR + + Sbjct: 289 ------------------------------------LVLTDDELPPLVQMWRNASPHIVQ 312 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG----- 574 W ++ +A ++ I+ + + L L SGR L Y Sbjct: 313 FWWDVDKAAKECIKTHLPQTTHGMK------FIYRSGCMFLRLRSGRYLCYPKPKIGTNR 366 Query: 575 ---NNRSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + +++ T ++ R TYG KL ENIVQA SRD+LAE M +V+ +HD Sbjct: 367 FGSESITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTVVMHIHD 426 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E V + P + + LMT P WA GL L A G+ S Y+K Sbjct: 427 EAVIDAPSN--RSLDTMVQLMTEVPDWANGLILNAAGFVSDFYKK 469 >gi|223934879|ref|ZP_03626798.1| DNA polymerase I [bacterium Ellin514] gi|223896332|gb|EEF62774.1| DNA polymerase I [bacterium Ellin514] Length = 947 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 105/697 (15%), Positives = 195/697 (27%), Gaps = 152/697 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 T D ET S ++ +I AF F+ DP + Q Sbjct: 374 KTFCFDTETTSLD----------TKEARLIGLAFAFEKQKGFYVAVPADPEEAREILQEF 423 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 + EN + V HN ++ VLK + + + T++ + + E Sbjct: 424 RAVFENEQIQKVGHNLKYDLAVLKWH-GVGVH-GKLFDTMLAHSLIEPEMRHGMDYMSEV 481 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 +LI + EY D VT +++++L Sbjct: 482 Y--LGYSPISITKLIGD---------EKSKQLNMADVPVAKVAEYAAEDADVTWQLWEKL 530 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 EPL E L + + G VD + + + E +Q + L Sbjct: 531 EPLLKEKGQERVFYEVEAPLIPVLTAMEYEGIKVDASALAEFSTQLSKEMANHEQTIYRL 590 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 + +L LF + + + T ++ L ++ + R Sbjct: 591 AGQ-EFNLNSPRQLGEILFDKLKISENAKKTKTGQYATNEQTLMDLAADHEIVQRLLDYR 649 Query: 281 MRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 A++ + L + GR+ T + TGR + QN+P + +E Sbjct: 650 -GATKLKSTYADALPGTIWKPTGRVHTTFNQAVTT-TGRLNSQNPNLQNIPIRTEQGKE- 706 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398 +R + E L+ AD + IE R++A ++ EQ Sbjct: 707 ------------------------IRKAFVPRNEDYVLLSADYSQIELRIIAALSHEQGM 742 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+ F D++ T AR + V QVT + R K++ + Y A L Sbjct: 743 LEDFGRKLDIHTATAARVYGVPLDQVTPEMRRKAKMVNYGIAYGISA-----FGLAQRLR 797 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + ++ + R + +H + G R + R ++ V Sbjct: 798 IPRKEAATIIEQYFAQYPGIAKYMRDTIDFAKQHGYVETVTGR--RRYMRDIRSANAAVR 855 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + G A K + ++ + Sbjct: 856 G---GAERNAINAPIQGTAADMIKIAMI-------------------------NIHGELT 887 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM-MNATKAGYDIVLTVHDEIVCETP 637 L M + +V VH Sbjct: 888 KRK----------------------------LKSRMLLQVHDE---LVFDVH-------- 908 Query: 638 DTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 T+E + M + +P++ E K + Sbjct: 909 QTEENEVRQIVEEKMRTAIQ--LEVPIEVEIGSGKTW 943 >gi|317121267|ref|YP_004101270.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885] gi|315591247|gb|ADU50543.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885] Length = 1060 Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 96/586 (16%), Positives = 165/586 (28%), Gaps = 127/586 (21%) Query: 98 VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 + A + + G EL Sbjct: 582 LAAYLLDPVRN-----RYYLVDVARQFFGWELEEGPADRPDDPACRTTQLLGRD---AAL 633 Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + V E L + + + G VD L ++ + Sbjct: 634 CARLRPAVEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLEELGRLFTRRSQE 693 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI 274 L +++ L + ++L LF GL + T+ +T VL + P A Sbjct: 694 LAEQIYQLAG-ETFNINSTQQLGQILFERLGLPVVKKTKTGYSTDAEVLETLAARHPIAE 752 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 V R + ++ L E + DGR+ T Q A+ TGR S QN+P Sbjct: 753 LVLEYR-SLVKLQGTYVDGLAEHIGPDGRVHTTFQQTVAA-TGRLSSTQPNLQNIPIRDE 810 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R +A G +LV AD + IE RVLA +G Sbjct: 811 PGR-------------------------SLRRAFVAPPGHRLVAADYSQIELRVLAHYSG 845 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L+AF G+D++ T + F V QVT +Q Sbjct: 846 DEGLLEAFARGQDVHARTASEIFGVPLEQVTPEQ-------------------------- 879 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 A NF + A R + +++ Sbjct: 880 ------------------RRVAKAVNFGLAYGQTDYGLARALRIDRADARRFMDRYFERY 921 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + + ++G+ GR ++ Sbjct: 922 PGVKRYM---EETIRRARQHGEVTTLL-----------------------GRRRPVPEIR 955 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 + ++ R +Q + DI+ M+ +A IVL V Sbjct: 956 HRVYHIRQN---AERVAINTP------IQGTAADIMKLAMIRVYRALAGEGLRARIVLQV 1006 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE++ E P+ + ++L M A +PL + + Sbjct: 1007 HDELLVEAPEDEVPAVAALLRREMEGAFPLA--VPLVVDVKAGTNW 1050 >gi|78187499|ref|YP_375542.1| DNA polymerase A [Chlorobium luteolum DSM 273] gi|78167401|gb|ABB24499.1| DNA polymerase A [Chlorobium luteolum DSM 273] Length = 945 Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 98/697 (14%), Positives = 195/697 (27%), Gaps = 152/697 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----HDPVMPQVL 57 + +D ET S + + + + ++L Sbjct: 372 DKIAVDTETTSLD----------TFEAELAGISISAEPAKARFISFAGTGLDRGRSIEIL 421 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 + LEN + N ++ VLK L++ T++ + L + Sbjct: 422 RPLLENPAIPKTGQNLKYDILVLKNY-GLELGPVG-FDTMLASYVLDPDGKHNLDDMAAL 479 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L + K + + +Y D + ++ Sbjct: 480 H------------LRLKTTKYDELTGTGKNRLHIYDVEPAKLTDYACQDADLALQLEGAF 527 Query: 176 EPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELES 224 E L L QTI G +D + V + L + + + Sbjct: 528 TRNLEAEPRLMELCQTIEFPLVSVLAKMEHQGISIDSKHLEETSMAVGHQLESLRETIHA 587 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L LF GL + T+ +T VL L P + R Sbjct: 588 AAGTD-FNIDSPKQLSHILFNVLGLPTKKTTKTGFSTNVEVLEELAPLHPVVSDLLLYR- 645 Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L + +N GR+ + + TGR S QN+P + E Sbjct: 646 SLQKLKTTYIDALPKMVNPRTGRVHTSFNQHV-TATGRLSSSNPNLQNIPIRTPLGRE-- 702 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R I + L+ AD + IE R+ A ++G+ + Sbjct: 703 -----------------------IRKAFIPTNPANWLLSADYSQIELRIAAEISGDPKLI 739 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G D++ T F+ +T D R K + + Y Q + LN+ Sbjct: 740 EAFRNGLDIHAETARVIFDT--EDITADMRRKAKEVNFGVLYG-----IQPFGLSKRLNI 792 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 ++ E++ + + E ++ +G R + ++S V Sbjct: 793 PRNEAREIIDTYREKYPGLFSSLEGVIEEGRKNGFVTTLLGR--RRYLRDLTSRNSNV-- 848 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 +A T G A K Sbjct: 849 -QKAAERAAMNTPIQGTAADIIKC-----------------------------------A 872 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 +N +R++ + + + ++ +V ET + Sbjct: 873 MNLCSRRID-----------------AASMQSVMLLQVHDE-----------LVFETTED 904 Query: 640 DEFNASMLYHL-MTSNPSWA--KGLPLKAEGYESKRY 673 ++ L M + K +P+ + K + Sbjct: 905 EKEGLKSLVEEAMIEAAALCGLKNVPVAVDTGIGKNW 941 >gi|126651389|ref|ZP_01723596.1| DNA polymerase I [Bacillus sp. B14905] gi|126591918|gb|EAZ86001.1| DNA polymerase I [Bacillus sp. B14905] Length = 875 Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 89/650 (13%), Positives = 187/650 (28%), Gaps = 129/650 (19%) Query: 30 VILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 ++ A D + + D + L+ LE++ +S + LK + Sbjct: 331 LLGIALS-DGNKTQYIPFDIAAKSDI---LRCWLEDSSKIKYMSDSKASQAALKRA-GIQ 385 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + ++ + N + V + + E + + KG Sbjct: 386 LAGVD-FDLVLASYINNPGLSGDDVATLARELGYYDVQADETV--YGKGAKRAIPEIDKL 442 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 H + + + ++ + E L + + G V+ A + Sbjct: 443 AQHVSRKAYAVWSLQPKLEALLKENEQFDLYKDLELPLAAILGEMESEGITVNRATLEKM 502 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 Q ++ + L+QE+ + + ++L LF + GL + T+ +T VL Sbjct: 503 GQELNEKLVVLEQEIYAEAG-ETFNINSPKQLGVILFDKLGLPVIKKTKTGYSTAADVLE 561 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K + R + + L++ ++ T + TGR S Sbjct: 562 KLKSEHAIIEYILLYRQ-LGKLQSTYIEGLLKEIHEKDSKVHTRFQQALTATGRLSSTDP 620 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAG 383 QN+P + +R + S E L AD + Sbjct: 621 NLQNIPIRLEEGRK-------------------------IRQAFVPSNENWILFSADYSQ 655 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA M+ ++ ++AF G D++ T F+V+ +V + R K + + Sbjct: 656 IELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKAVNFGIV--- 712 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G++ + + Sbjct: 713 -----------YGISDYGLSQNLDI------------------------------TRKEA 731 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + V + +++ + NG Sbjct: 732 ATFIDKYFASFPGVKQYMDDI---VQNAKFNGYVTTILN--------------------- 767 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620 R D+ ++ R +Q + DI+ + M++ Sbjct: 768 --RRRYLPDITSSNF---NLRSFAERTAMNTP------IQGSAADIIKKAMIDMDARLKK 816 Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 ++L VHDE++ E P + + +M + +PLK + Sbjct: 817 ENMQAKLLLQVHDELIFEAPKEEIALLEKIVPEVMENAIE--LSVPLKVD 864 >gi|148244250|ref|YP_001218944.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA] gi|146326077|dbj|BAF61220.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA] Length = 909 Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 91/685 (13%), Positives = 194/685 (28%), Gaps = 162/685 (23%) Query: 27 DVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFE 76 + ++ + F D HD + LK LE+ ++ + N ++ Sbjct: 347 NASIVGWVFLIDK-DSFYVPVNHDYIDAPKQLNFNDVLNQLKPILEDVSISKIGQNLKYD 405 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARF 133 +L +D+ +V + + + E L + Sbjct: 406 AHILSNY-KIDLQGIS-DDVIVKSYCLNSVATRHNMNDLSEYY------------LNYQT 451 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------- 182 + ++ + Y +V +T + L+ ++ Sbjct: 452 INFVDILGKGKKQVTFNQVNVEIALLYVCENVIITSLLNHMLDEEIAQYPRLVKLYQNLE 511 Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 L + + G +DV + T + + + ++ L V + ++++ Sbjct: 512 LPLIKVLLCMERNGVELDVNILSTQQLDITQQMEDIKNQVFELADN-VFNLESPKQIQRI 570 Query: 243 LFLETGL------HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF GL +T + L P + + R ++ L L Sbjct: 571 LFESKGLGLIPLRKTPKGVPSTNEEALKLL--DHPVVDLILSYR-TLAKLNSTYLEVLPR 627 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 ++ + T + TGR S QN+P S Sbjct: 628 KIDLNTHRLHTSYNQVVTATGRLSSSNPNLQNIPIFSEQG-------------------- 667 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 C+R I +G ++ AD + IE R++ ++ +Q L+AF +D++ T + Sbjct: 668 -----SCIRGAFITGKGNVIISADYSQIELRIMTQLSKDQNLLEAFNNDKDVHSETASTM 722 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 FN+ +VT + R K + G++ Sbjct: 723 FNIPIDEVTSEYRRRAKAINF--------------GLIYGMS------------------ 750 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 A + T ++ + + V + + + + Sbjct: 751 ------------AYGLAKQIGVSRTKAKQYMDTYFDNYPSVLYYMDNIKEIAK------- 791 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 + GR L + L R Sbjct: 792 -------------------VQGYVETIMGRRLYLPQINAKNKMLQQH---ALRTAINAP- 828 Query: 597 LTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYH 649 +Q S DI+ + M + +++ VHDE+V E + S + Sbjct: 829 -----MQGSSADIIKKSMFDVYTWIGQDNPDIRMIMQVHDELVFEVSASKADEFSRKIQA 883 Query: 650 LMTSNPSWAKGLPLKAEGYESKRYR 674 LM++ + +PLK + ++ Sbjct: 884 LMSNT--YLLDIPLKVDVGIGNSWK 906 >gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170] gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170] Length = 944 Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 99/699 (14%), Positives = 205/699 (29%), Gaps = 152/699 (21%) Query: 1 MAT--LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMP 54 M + D ET LT ++ AF ++ D + Sbjct: 368 MKQNSVCFDTETTGLNPLT----------AELVGIAFSWEAGKGFYIPFPEDKNQAQEII 417 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112 + L+ E+ + + N ++ VL N+ + ++ +++ + + Sbjct: 418 ETLRPFFESEMIEKIGQNLKYDIKVLHKY-NIQVK-GKFFDSMLAHYLINPDMRHNMDVL 475 Query: 113 GE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 E L + + E LI + EY D +T ++ Sbjct: 476 SETYLNYTPVSITE---LIGK---------KGKNQLSMRDVPLEKQTEYAVEDADITYQL 523 Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + P + E L ++ + G +D +L++ ++ + +L + Sbjct: 524 AQHFRPELAEASTEELFNTIEIPLLHVLADMELEGINLDKEFLGSLSEDLNNDIKELQSK 583 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + ++L LF + L T+ +T + VLS K V Sbjct: 584 IYK-EADQEFNIASPKQLGEILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHEIIRNV 642 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R S+ ++ L + T + TGR S QN+P + Sbjct: 643 LEYR-GLSKLKSTYVDALPLQVEERTGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERG 701 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395 VR + E L+ AD + IE R++A ++ E Sbjct: 702 R-------------------------QVRKAFVPRDEDYTLLAADYSQIELRIIAALSEE 736 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 ++AF+ GED++ +T ++ F+V +VT++QR+ K + + Y A + Sbjct: 737 DTMIEAFKNGEDIHASTASKVFDVPLDEVTREQRSNAKTVNFGIIYGVSA-----FGLSN 791 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 +L+ + + + N+ + ++ +G R K ++ Sbjct: 792 QTDLSRTEAKELIETYYKTYPKLRNYMSEQIDFARDNGYVQTVLGR--RRYLKDINGSNA 849 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + G A K + ++ Sbjct: 850 IVRG---AAERNAVNAPIQGSAADIIKIAMI-------------------------NIHK 881 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 S N T+ ++ +V VH Sbjct: 882 KLSEGNYKTKM---------------------------LLQVHDE---LVFDVH------ 905 Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + ++ M + A +PL E + Sbjct: 906 --KAELEELKSLIQSEMENAYKLA--VPLDVELGLGDNW 940 >gi|295397475|ref|ZP_06807558.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563] gi|294974275|gb|EFG50019.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563] Length = 907 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 98/671 (14%), Positives = 188/671 (28%), Gaps = 150/671 (22%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKAC 83 D V+ A+ + + D + Q K L + VT V ++ V+ Sbjct: 360 HDSEVVAVAW-TNGSEIF----TGDARLLQADLFKAWLSDDQVTKVVFDAKR-TKVMLDY 413 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 +D L+ + + E + + E Sbjct: 414 LGIDFA-GVVDDVLIGSYLLHARDNSNDLAEVAREFD---------MDDLSYDEAIYGKG 463 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTIN 193 + E E+ V + + + + P Q L + + Sbjct: 464 AKRG--VPEEAETMYEHIARKVHIIARLQETIRPQLEANQMDDLYQKIELPLALVLANLE 521 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G VD T+ L+ ++ + ++L LF E GL + Sbjct: 522 ILGISVDKQQLVTMQAEFKEIIAGLEADIWKEAGH-EFNVNSPKQLGVILFEEMGLPVIK 580 Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+ +T Q VL P + N R ++ + L E ++ DG++ Q Sbjct: 581 KTKTGYSTAQDVLEKLAGQAPIIDLILNYRQ-LNKLQSTYVEGLQEFIHEDGKIHSRFQQ 639 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 + TGR S QN+P S +R + Sbjct: 640 -TLTSTGRLSSADPNLQNIPIRSEEGR-------------------------SIRKAFVP 673 Query: 371 S-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 S E + +D + IE RVLA ++G++ +AF ED++ +T + +NV +VT + R Sbjct: 674 SHEDWVIFSSDYSQIELRVLAHISGDKHMQEAFNNHEDIHTSTAMKVYNVPKEEVTSNMR 733 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + G++ + Sbjct: 734 RNAKAVNFG--------------IVYGISDYGLSQ------------------------- 754 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + + + + V ++ + ++ Sbjct: 755 -----NLNISRPEAKNFIDTYLENYPGVQAYMKDVVEKAKE------------------- 790 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + + R D+ R +Q + DI Sbjct: 791 -------DGYVETLFNRRRYLPDLKAKNF---NVRSFAERNAMNTP------IQGTAADI 834 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + M+ K +++L +HDE+V E P + L +M S +P Sbjct: 835 IKIAMVKMDEALKEHKLKANLLLQIHDELVFEVPKDEIETLEKLVTEIMGSAAQ--LDVP 892 Query: 663 LKAEGYESKRY 673 L+ E + Sbjct: 893 LEIESNYGATW 903 >gi|303242091|ref|ZP_07328582.1| DNA polymerase I [Acetivibrio cellulolyticus CD2] gi|302590385|gb|EFL60142.1| DNA polymerase I [Acetivibrio cellulolyticus CD2] Length = 897 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 82/669 (12%), Positives = 187/669 (27%), Gaps = 143/669 (21%) Query: 29 CVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + + + + + K E+ ++ H+ V Sbjct: 344 KLAGLCVSIKEGSSYFLNINERLTENEFLEGFKSIFEDGEIKKYGHDLKN-FIVYLKQNG 402 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +++ T++ A + E L++ + + I E Sbjct: 403 IELNGVA-FDTMIGAYIINPSRETYTISE---LAADFLNTNVKPI------EEMAGKGKS 452 Query: 146 NKPNHREAWRLFGE----YCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 P Y + ++I +L E L + + Sbjct: 453 FLPFGSMDVEELKNVVGLYPEIIYKAMKKIDDKLNENDQLNLYYKIELPLVRVLADMEFY 512 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G+ +++ +++ +D + +L ++ L + ++L LF + L + T Sbjct: 513 GFKININELTVISRQLDEKINQLTLKIYELAG-EEFNINSPKQLGVVLFEKLELPIIKKT 571 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T VL + + R + + L+ +N + Sbjct: 572 KTGYSTDAEVLEELAEKHEIVSNILEYRQ-LVKLKSTYIEGLMAVINPHTGKIHSSFNQT 630 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P +R + + Sbjct: 631 VTVTGRISSTEPNLQNIPIKLEMGR-------------------------NIRKAFVPCD 665 Query: 373 G-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 G KLV AD + IE RVLA + ++ + AF ED++ +T ++ F V +VT R+ Sbjct: 666 GNYKLVDADYSQIELRVLAHITDDENMIGAFNNNEDIHTSTASKVFGVPNEEVTSALRSK 725 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + G+ + + Sbjct: 726 AKAVNFGIV--------------YGIGDFSLSK--------------------------- 744 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + K++ V + +++ ++ Sbjct: 745 ---DLGITRKEARNYIDGYLDKYANVRKYMHDIVAQGKE--------------------- 780 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R ++ + R +Q + DI+ Sbjct: 781 -----FGFVTTMFNRRRYLPELKASNF---NVRSFGERIAMNTP------IQGSAADIIK 826 Query: 612 EGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLK 664 M+ + ++L VHDE++ E +++ +M+ M + A +PL Sbjct: 827 IAMVMVHSELNRRQLKSRLILQVHDELIIEAHESELEEVTMILKESMENAT--ALKVPLS 884 Query: 665 AEGYESKRY 673 + + Sbjct: 885 VDVKSGNSW 893 >gi|319778281|ref|YP_004129194.1| DNA polymerase I [Taylorella equigenitalis MCE9] gi|317108305|gb|ADU91051.1| DNA polymerase I [Taylorella equigenitalis MCE9] Length = 908 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 100/697 (14%), Positives = 203/697 (29%), Gaps = 153/697 (21%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53 + +D ET S L ++ + D H + Sbjct: 334 VALDTETNSLDQLKT----------RLVGISLSTDIGKAWYIPVAHQVELGCNQLMKAEV 383 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111 + ++ LE+ T + N+ ++ V + + + T+VLA L+A Sbjct: 384 LEAMRSWLESEQKTKILQNAKYDMHVFAN-EGIVLKGIK-HDTMVLAYVIDTNQRVGLEA 441 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + K L + E + +Y D T + Sbjct: 442 LSL------------KYLNRKGLSYEEICGKGAKAITFDYVPLDQATQYACEDADFTFHL 489 Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 L P ++ + + G +D + + ++I+ +KL+ E Sbjct: 490 LTELLPKLEGFEGLKFIYDLEMQVLQVLFDMERVGVLIDSSKLLSQSEIISCRLSKLESE 549 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + +L + ++L LF + L + T +T + L P A+ + Sbjct: 550 IFNLAG-EEFNINSPKQLSEILFTKLKLETQGKTRTGVISTNEDALEKLALDHPIAVHLL 608 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R S+ + L +N T+ +GR S QN+P + Sbjct: 609 EYR-SLSKLKSTYTDKLPTMINKVTGRVHTVFSQTTVLSGRLSSFDPNLQNIPIRNEDGR 667 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 VR +A +G KL+ AD + +E R++A ++ ++ Sbjct: 668 -------------------------QVRQAFVAEDGFKLMSADYSQVELRLMAHISNDEG 702 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 LKAF+ G D++ +T + F V ++V QR K + L Y GA A L Sbjct: 703 MLKAFKEGADIHRSTASEVFGVPLSEVDDSQRRAAKAINFGLIYGMGA-----FALANNL 757 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 ++ + + F ++ + + G R + Sbjct: 758 GISRETAQNYIYKYFDRFPKVRKFMDDIKIQASQDGYVETIYGR---------RIYIPGI 808 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + + AI A + + Sbjct: 809 QD-----SKGARKAALERVAINAPVQGSAADIIK-------------------------- 837 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 + + + +++ I+ + +VL VH Sbjct: 838 MAMISVHKWISQNKLNSR-------------II----LQVHDE---LVLEVH-------- 869 Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++ L LM +PL+A+ + Sbjct: 870 ESEIEILKLKLPKLMEDVAK--LDVPLEAQVNVGSNW 904 >gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49] gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49] Length = 949 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 100/699 (14%), Positives = 216/699 (30%), Gaps = 152/699 (21%) Query: 1 MAT--LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MP 54 M + D ET LT ++ AF ++ + + Sbjct: 373 MKQPSVCFDTETTGLNPLT----------AELVGIAFSWEAGKGFYIAFPKEKEAAQEII 422 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112 ++L+ E T++ + N ++ VL+ ++ + + T++ + + Sbjct: 423 ELLRPFFEATEIEKIGQNLKYDLKVLRKY-DIVVK-GQLFDTMLAHYLINPDMRHNMDIL 480 Query: 113 GE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 E L + + E LI + K EY D +T ++ Sbjct: 481 AETYLNYTPVSITE---LIGK---------KGKNQKSMRDVPVADQTEYAVEDADITLQL 528 Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + E L + + G +D ++L+ ++ + L++ Sbjct: 529 KEHFSKELGEANTQKLFTDIEVPLLRVLAAMEAEGINLDKTFLNSLSDDLESDIASLEKN 588 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 + + + ++L LF + L T+ +T + VLS+ K V Sbjct: 589 IYAEAG-EEFNIASPKQLGEILFGKMKLVEKPKKTKTGQFSTAEDVLSALAKDHKIIADV 647 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R ++ ++ L + + T + TGR S QN+P + Sbjct: 648 LEYR-GLAKLKSTYVDALPLQVEPATQRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERG 706 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395 VR + E L+ AD + IE R++A ++ E Sbjct: 707 R-------------------------QVRKAFVPRDENYVLLAADYSQIELRIIAALSQE 741 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ GED++ +T ++ F+V +VT++QR+ K + + Y A + Sbjct: 742 ETMMEAFKNGEDIHASTASKVFDVPLEEVTREQRSNAKTVNFGIIYGVSA-----FGLSN 796 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 +L+ ++ E + +++ ++ + +G R A ++ Sbjct: 797 QTSLSRGEAKELIDAYYETYPKLKHYMSEQVNFARDNGYVETIMGR--RRYLNAINGSNA 854 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + G A K + + YR + Sbjct: 855 IVRG---AAERNAVNAPIQGSAADIIKIAMINI---------------------YRKLEE 890 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH-DEIVC 634 + ++ +V VH DE+ Sbjct: 891 GNYKT-------------------------------KMLLQVHDE---LVFDVHKDEL-- 914 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M+ H M + + +PL E + + Sbjct: 915 ------DEMKTMIKHEMENA--YLMDVPLDVEVGIGQNW 945 >gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256] gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256] Length = 937 Score = 327 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 96/710 (13%), Positives = 183/710 (25%), Gaps = 169/710 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51 + +D ET S +T ++ + H Sbjct: 356 VVAVDTETASLDSVT----------GRLVGVSLSTGAGKACYIPLGHGGTDMFAEKPEQI 405 Query: 52 ---VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-- 106 + L + V V HN ++ VL + + + TL+++ + Sbjct: 406 AMGDALERLGALFADDAVLKVGHNLKYDIGVLAQH---GVTVAPYDDTLLMSFALDAGKH 462 Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 L + + L + EY D Sbjct: 463 QHGLDELAKLH------------LDHVCLSFKDVCGTGKSQISFAEVQLDRATEYAAEDA 510 Query: 166 TVTRE----------IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 V + ++ L + + + G VD L+ E Sbjct: 511 EVAWRLWKLLKLRLPLEGGTRVYEMVDRPLAAVVEGMERAGIMVDRDYLAKLSGEFANEM 570 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271 +++ E+ +L + +L LF + GL ++ T Q L ++ Sbjct: 571 LRIEGEIHALAGQP-FAIGSPRQLGEILFDKMGLKGGRKGKSGDWSTDQNELERLERDGV 629 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + + ++ + L E +N+ T L ++TGR S QN+P Sbjct: 630 PIARKILEWRQLAKLKSTYTDALQEQVNATTGRVHTSYSLVGAQTGRLSSTDPNLQNIPI 689 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + +R IA+ G L+ AD + IE R+ A Sbjct: 690 RTEVGR-------------------------QIRDAFIAAPGHVLIAADYSQIELRLAAH 724 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 MA +AF G+D++ T F +V +D R K + ++ Y + Sbjct: 725 MADVPELKEAFARGDDIHAATAIELFG----EVNRDTRGKAKTVNFSILYGIS-----RW 775 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 L + + E + ++ E + G W Sbjct: 776 GLAGRLEITPDEAQALISRYFERFPGISDYISDTLETARARGYTETLFGRK------TWF 829 Query: 512 QKHSRVSELWNEL----HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 R+ +A G + KR + D Sbjct: 830 ---PRIKAANQNERAGSERAAINAPIQGTSADLIKRAMARMPGALADAGL---------- 876 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 D+ + ++ Sbjct: 877 ---------------------------------------ADV--KMLLQVHD-------- 887 Query: 628 VHDEIVCETPDTDEFNASMLYH-LMTSN--PSWAKGLPLKAEGYESKRYR 674 E+V E P+ A + +M P+ +PL+ E K + Sbjct: 888 ---ELVFEAPEDKAAAAGEVIRAVMMGAAEPALKLSVPLEVEIGTGKSWG 934 >gi|310641223|ref|YP_003945981.1| DNA polymerase i [Paenibacillus polymyxa SC2] gi|309246173|gb|ADO55740.1| DNA polymerase I [Paenibacillus polymyxa SC2] Length = 884 Score = 327 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 96/683 (14%), Positives = 184/683 (26%), Gaps = 147/683 (21%) Query: 9 ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68 ET ++ F + V ++E L + + Sbjct: 327 ETHGDNP----------HHAEIVGLIFAATGRQFFMTLNVLQSDAATPIREWLADPERKK 376 Query: 69 VAHNSYFERT----VLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQ 121 H + L ++ + L + LSS Sbjct: 377 RGH----DLHRTDLALHWH-GIEFAGAE-FDVQLAGYLLDPTDANQTLSGLAAKYGLSSI 430 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 + ++ F KG ++ +H E E + + Sbjct: 431 RPDD-----EVFGKGAKYKVPEMDVLSDHVARKAAVIEALVPVQQAELEKTEMHKLFHEL 485 Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E L + + +G V+V L + + + L E+ S+ + ++L Sbjct: 486 EMPLSRILADMEKQGILVNVEELRALGKEFEAQIATLVGEIYSIAGV-EFNLNSPKQLGE 544 Query: 242 WLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + GL + T+ +T VL + R ++ + L++ + Sbjct: 545 ILFDKLGLPVIKKTKTGYSTDAEVLEKLAPYHDIVQNILQYR-TIAKLQSTYVEGLLKEI 603 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 + T + TGR S QN+P + Sbjct: 604 SEKTGKVHTYFRQTVAATGRLSSQFPNLQNIPIRLEEGRK-------------------- 643 Query: 359 IISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R + G ++ AD + IE RVLA ++ ++ +AF D++ T + F Sbjct: 644 -----IRKVFVPSEPGWSILAADYSQIELRVLADISDDERLKEAFVHDMDIHTKTASDVF 698 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 V V D R K + + Y + LN+ + + ++ Sbjct: 699 GVPAEAVDSDMRRSAKAVNFGIVYGIS-----DYGLSQNLNITRKEAARFIDQYFDVFQG 753 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 + + ++ Sbjct: 754 VRRYMDDIVKDAKRDGYVKTL--------------------------------------- 774 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 +RR +P + R+ +NT Sbjct: 775 --LERRRYLPEINASNFNQRSF---------------AERTAMNT--------------- 802 Query: 598 TENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HL 650 +Q + DI+ M+ A ++L VHDE+V E P + L Sbjct: 803 ---PIQGTAADIIKLAMVQMDAALRERNLRSRMLLQVHDELVFEVPPEEMETMKELVPAT 859 Query: 651 MTSNPSWAKGLPLKAEGYESKRY 673 M + A +PLKAE + Sbjct: 860 MEAALKLA--VPLKAEVSYGSNW 880 >gi|17978836|gb|AAL47553.1| DNA polymerase [Caldanaerobacter subterraneus subsp. yonseiensis] Length = 871 Score = 327 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 97/678 (14%), Positives = 198/678 (29%), Gaps = 146/678 (21%) Query: 17 TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76 + V AF FD D + L+E E D V+H + Sbjct: 315 KNVAFYPLIYEGDVKKIAFSFD-GTTLYSDVER----LEDLREIFEREDCEFVSHEIK-D 368 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136 V + ++ +++ T ++A + + LK K L Sbjct: 369 FLVKLSYKGIECK-SKYLDTAIMAYLLNPSESNYDLDRVLK---------KYLKVDVLSH 418 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL----------SSKEQELW 186 E + + + EY G E+ +L E L Sbjct: 419 EEVFGKGKDRRRYEEVSEEVMAEYICGRCNHLFELKDKLMSFIEEMDMKKLLLEIEMPLV 478 Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + +++ G+ +D + L++ +D +++ ++ + ++L +LF + Sbjct: 479 EVLKSMEVDGFTLDRNVLKELSEKIDERISEILDKIYKEAGYQ-FNVNSPKQLGEFLFEK 537 Query: 247 TGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 L + T+ +T VL ++ R ++ + + M+ + R Sbjct: 538 LNLPVIKKTKTGYSTDSEVLEQLTAYNDIVSEIIEYRQ-LTKLKSTYIEGFLPLMDENDR 596 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + + + A+ TGR S QN+P Sbjct: 597 VHSNFKQMVAA-TGRISSTEPNLQNIPVREEFGR-------------------------Q 630 Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R I + +V AD + IE RVLA ++ ++ ++AF ED+++ T + F V P Sbjct: 631 IRRAFIPRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQ 690 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 VT + R G++ Sbjct: 691 NVTPEMRRAA--------------KVVNFGIIYGISD----------------------- 713 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 A + + + +K+ V E ++ + ++ Sbjct: 714 -------YGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKE------------ 754 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 N + R ++ + T Q R + Sbjct: 755 --------------NGYVTTIMNRRRYIPEINSRNF---TQRSQAERLAMNTP------I 791 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNP 655 Q + DI+ M+ + ++L VHDE+V +T + + M + Sbjct: 792 QGSAADIIKMAMVKVYQEFKRLNLKSRLILQVHDELVVDTYKDELELVKEILKENMENVI 851 Query: 656 SWAKGLPLKAEGYESKRY 673 +PL E + Sbjct: 852 K--LKVPLVVEIGVGPNW 867 >gi|254478282|ref|ZP_05091662.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035747|gb|EEB76441.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM 12653] Length = 635 Score = 327 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 96/678 (14%), Positives = 199/678 (29%), Gaps = 146/678 (21%) Query: 17 TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76 + V AF FD D + L++ E D V+H + Sbjct: 79 KNVAFYPLIYEGDVKKIAFSFD-GTTLYSDVER----LEDLRKIFEREDAEFVSHEIK-D 132 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136 V + ++ +++ T ++A + + LK K L Sbjct: 133 FLVKLSYKGIECK-SKYLDTAIMAYLLNPSESNYDLERVLK---------KYLKVDVLSH 182 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL----------SSKEQELW 186 E + + + EY G + E+ +L E L Sbjct: 183 EEVFGKGKDRRRYEEVSEEVMAEYICGRCSHLFELKDKLMAFIEEMDMKKLLLEIEMPLV 242 Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + +++ G+ +D + L++ +D +++ ++ + ++L +LF + Sbjct: 243 EVLKSMEVDGFTLDRNVLKELSEKIDERISEILDKIYKEAGYQ-FNVNSPKQLGEFLFEK 301 Query: 247 TGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 L + T+ +T VL ++ R ++ + + M+ + R Sbjct: 302 LNLPVIKKTKTGYSTDSEVLEQLTAYNDIVSEIIEYRQ-LTKLKSTYIEGFLPLMDENDR 360 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + + + A+ TGR S QN+P Sbjct: 361 VHSNFKQMVAA-TGRISSTEPNLQNIPVREEFGR-------------------------Q 394 Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R I + +V AD + IE RVLA ++ ++ ++AF ED+++ T + F V P Sbjct: 395 IRRAFIPRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQ 454 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 VT + R G++ Sbjct: 455 NVTPEMRRAA--------------KVVNFGIIYGISD----------------------- 477 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 A + + + +K+ V E ++ + ++ Sbjct: 478 -------YGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKE------------ 518 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 N + R ++ + T Q R + Sbjct: 519 --------------NGYVTTIMNRRRYIPEINSRNF---TQRSQAERLAMNTP------I 555 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNP 655 Q + DI+ M+ + ++L VHDE+V +T + + M + Sbjct: 556 QGSAADIIKMAMVKVYQEFKRLNLKSRLILQVHDELVVDTYKDELELVKEILKESMENVI 615 Query: 656 SWAKGLPLKAEGYESKRY 673 +PL E + Sbjct: 616 K--LKVPLVVEIGVGPNW 631 >gi|82395938|gb|ABB72056.1| thermostable DNA polymerase I [Geobacillus sp. MKK-2005] Length = 876 Score = 327 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 88/675 (13%), Positives = 174/675 (25%), Gaps = 157/675 (23%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKA 82 D ++ A + + + L + S F+ V Sbjct: 328 HDAPIVGIALV--NEHGRFFLRAEMALADSQFLAWLADETKKK----SMFDAKRAAVALK 381 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ L+ A V KM++ + + Sbjct: 382 WKGIELRGVA-FDLLLAAYLLNPAQDAGDVAAV-----AKMKQYEAVRPDEAVYGKGA-- 433 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------------EQELWYLD 189 R+ P+ I+ P + EQ L + Sbjct: 434 -KRSLPDEPTLAEHLVRKAA-------AIWALERPFLDELRSNEQDGLLIKLEQPLATIL 485 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G VD + + + ++Q + L + ++L LF + L Sbjct: 486 AEMEFTGIKVDTKRLEQMGSELAEQLRAVEQRIYELAGQ-EFNINSPKQLGIILFEKLQL 544 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T+ +T VL + + R + + L++ ++ D Sbjct: 545 PVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVHPDTGKVH 603 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 T+ ++TGR S QN+P + +R Sbjct: 604 TMFNQALTQTGRLSSAEPNLQNIPIRLEEGRK-------------------------IRQ 638 Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + + AD + IE RVLA +A + ++AF D++ T F+V+ +VT Sbjct: 639 AFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVT 698 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 R K + G++ A Sbjct: 699 ATMRRQAKAVNF--------------GIVYGISDYGLAQ--------------------- 723 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + V + Q +Q G Sbjct: 724 ---------NLNITRKEAAEFIERYFASFPGVKRYMETIVQEAKQ---KGYVTTLLH--- 768 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 R D+ + R +Q Sbjct: 769 --------------------RRRYLPDITSRNF---NVRSFAERTAMNTP------IQGS 799 Query: 606 SRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + DI+ + M++ + ++L VHDE++ E P + L +M A Sbjct: 800 AADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAV--A 857 Query: 659 KGLPLKAEGYESKRY 673 +PLK + + + Sbjct: 858 LRVPLKVDYHYGPTW 872 >gi|152976969|ref|YP_001376486.1| DNA polymerase I [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025721|gb|ABS23491.1| DNA polymerase I [Bacillus cytotoxicus NVH 391-98] Length = 877 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 95/660 (14%), Positives = 190/660 (28%), Gaps = 127/660 (19%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F D+ + + + + L++ ++ ++ LK Sbjct: 329 HKADIQGFGIQNDNG--CYFIPTDIALASEAFIKWLKDEEMRKYTFDAKRAIVALKW-KG 385 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 ++I L+ A K K ++ K + KG Sbjct: 386 VEIRGVD-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPAQE 442 Query: 146 NKPNHREAWRLFGEYCKGDVTV-TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y + E ++ E + E L + + +G VD Sbjct: 443 IVAEH-VARKVHVLYDVKQTFIDELEKNEQYELFINLEMPLACVLADMEVKGVKVDTERL 501 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + +++QE+ L + ++L LF + L + T+ +T Sbjct: 502 RNMGDELAGRLKEMEQEIYELAGT-EFNINSPKQLGVVLFEKLNLPVIKKTKTGYSTSAD 560 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL ++ + R + + L++ ++ + T ++TGR S Sbjct: 561 VLDKLMDHHEIIPKILHYRQ-LGKLNSTYIEGLLKVVHDESSKIHTRFNQVLTQTGRLSS 619 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVAD 380 QN+P + +R I S EG + AD Sbjct: 620 TEPNLQNIPIRLEEGRK-------------------------IRQAFIPSQEGWVMYAAD 654 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + Sbjct: 655 YSQIELRVLAHIAKDKGLIEAFQHDMDIHTKTAMDVFGVEKDEVTANMRRQAKAVNF--- 711 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 G++ + Sbjct: 712 -----------GIVYGISDYGLSQ------------------------------NLGITR 730 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 A + + V E +E+ Q +Q + Sbjct: 731 KAAGEFIEKYFASFPGVKEYMDEIVQEAKQ--------------------------KGYV 764 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----N 616 R ++ + R +Q + DI+ + M+ Sbjct: 765 STLLNRRRYIPEITSRNF---NVRSFAERTAMNTP------IQGSAADIIKKAMIVMADR 815 Query: 617 ATKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 816 LEEEGLQARLLLQVHDELIFEVPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|290893966|ref|ZP_06556942.1| DNA polymerase I [Listeria monocytogenes FSL J2-071] gi|290556504|gb|EFD90042.1| DNA polymerase I [Listeria monocytogenes FSL J2-071] Length = 875 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 80/662 (12%), Positives = 180/662 (27%), Gaps = 144/662 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 + + +E +E+ T V +++ + + + I Sbjct: 333 IGLTVHSSQGTYFFTKETAENSEAFREWVESEQ-TKVVYDAKKTMVAMNR---IGLAISG 388 Query: 93 W-ICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 ++ + ++ V + + +E + R+ P Sbjct: 389 ITFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDE-----------AVYGKGAKRSTP 437 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202 + + + LE + E L ++ + +G VD Sbjct: 438 EESIVASHLARKAVAIADLEKRLVADLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTE 497 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + L++ + SL + ++L LF + GL T+ +T Sbjct: 498 RLENMKVELAGRLKTLEESIHSLAG-EEFNINSPKQLGVILFEKLGLPAVKKTKTGYSTA 556 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL S ++ R + + L++ + + T ++TGR Sbjct: 557 ADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRL 615 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + G K+ Sbjct: 616 SSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKMFS 650 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + +E RVLA ++ ++ + AF+ D++ T F+V +V R K + Sbjct: 651 ADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN-- 708 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ + Sbjct: 709 ------------FGIVYGISDYGLSQ------------------------------NLGI 726 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + + + V E ++ + ++ + I Sbjct: 727 TRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH----------------- 767 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617 R ++ + R +Q + DI+ + M+ Sbjct: 768 -------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMS 811 Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 K ++L VHDE++ E P+ + + +M + +PLK + Sbjct: 812 ERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGD 869 Query: 672 RY 673 + Sbjct: 870 TW 871 >gi|314936207|ref|ZP_07843554.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80] gi|313654826|gb|EFS18571.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80] Length = 878 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 102/663 (15%), Positives = 208/663 (31%), Gaps = 131/663 (19%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81 Y +D ++ F F +D + D + P+ L + LEN + V +++ F V+ Sbjct: 330 YLKD-DILKFGF-YDKERYIVVDADNIKDYPE-LIKWLENENSKKVVYDAKKTF---VIA 383 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 N++I + ++ + + V +++ KE ++ + KG+ Sbjct: 384 HRLNINIQ-NIVFDAMLASYIIDPSRTIDDV--YSVVTNYHQTYVKEDVSIYGKGKKRHV 440 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 H + + K + E +++ L E L + + + G DV Sbjct: 441 PDTEILNTHIASITKSIDAVKPLMEKELESHQQMNLLKDLELPLARILSKMEEIGIYTDV 500 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 + Q + + L Q + + ++L LF L + T+ +T Sbjct: 501 NDLQHMQQELQEKLELLVQRIHDAAG-EEFNINSPKQLGVVLFETLKLPVIKKTKTGYST 559 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + P + R ++ + L + +++D R+ A +TGR Sbjct: 560 AVDVLEQLQNEHPIINDILEYRQ-LAKLQSTYVEGLQKVISNDKRIHTRFNQTLA-QTGR 617 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377 S QN+P + +R S E ++ Sbjct: 618 LSSVDPNLQNIPIRLEEGRK-------------------------IRKAFKPSSEDSVIL 652 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA + + +AF G+D++ T + F V +VT R K + Sbjct: 653 SADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMRRQAKAVNF 712 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y + LN+ + + + + + + ++ + + Sbjct: 713 GIVYGIS-----DYGLSQSLNITRKEAKIFIDDYLASFPGVKQYMSDIVKDAKANGYVET 767 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 +RR +P + + Sbjct: 768 L-----------------------------------------LHRRRYIPDITSRNFNLR 786 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R+ +NT +Q + DI+ M+ Sbjct: 787 GF---------------AERTAMNT------------------PIQGSAADIIKLAMVEF 813 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYES 670 K ++L VHDE++ E P ++ S+ +M +PLK + Sbjct: 814 DKQVQHTSYKAKLLLQVHDELIFEVPKSEVEEFSLFVEDIMEHALD--LDVPLKVDSNYG 871 Query: 671 KRY 673 + Sbjct: 872 PTW 874 >gi|148653845|ref|YP_001280938.1| DNA polymerase I [Psychrobacter sp. PRwf-1] gi|148572929|gb|ABQ94988.1| DNA polymerase I [Psychrobacter sp. PRwf-1] Length = 1022 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 94/729 (12%), Positives = 198/729 (27%), Gaps = 175/729 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49 +D ET S + ++ +F H H Sbjct: 407 YFAVDTETTSIN----------WREAQIVGLSFSVQAHEAYYLPLAHVDYNEPQKKAKNK 456 Query: 50 ------------------------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + LK LEN ++ + + ++ VL Sbjct: 457 KEEAEQAKLLANATVDPLIAKQLDRDTVLAKLKPILENPNIGKIGQHLKYDAHVLSKY-G 515 Query: 86 LDIP--IHRWI-CTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 +++ W T++ + ++ + + E Sbjct: 516 IELNMSPKNWEMDTMLASYVLNAAATRHSMDDLARHYLHTQ------------TISFEDV 563 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQELWYL 188 + + A + +Y D +T ++F+ + E + + Sbjct: 564 AGKGAKQVTFDKVAINIASDYACEDADITYQLFELFQDKLKDDAVNQRLLHELEIPVAQI 623 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G + + + L++ D E L+++ + G + ++L LF + G Sbjct: 624 LCQMESEGIMIKRSFLNELSERFDEEIVALEKQAY-IEAGEAFNLGSPKQLGEMLFDKLG 682 Query: 249 LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 + T++ T + VLS P A R ++ + L ++D Sbjct: 683 VIGGKKTKSGQYSTGEAVLSKI--EHPLAEIALEYR-SLAKLKNTYTDALDAVADNDTDR 739 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 T + TGR S QN+P +++ + Sbjct: 740 VHTSYHQALTSTGRLSSTDPNLQNIPIRTKTGR-------------------------LI 774 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R IA +G+ L+ AD + IE R++A +G+ +AF G D++ T A + V Sbjct: 775 RQAFIAPKGRVLLAADYSQIELRLMAHFSGDDNLTRAFNEGLDIHSATAAEVLGKSVDDV 834 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T +R K + L Y A + + N + + + + Sbjct: 835 TPTERRNAKAINFGLLYGMSA-----FGLAKQIQMGRSEAQDYINQYFARYPGVQRYMQE 889 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + ++ + +G + V +A G A K Sbjct: 890 TRNSAVDNGYIETILGRKLYTPDIQ--HSNQMVR---RGAERAAINAPLQGSAADLIKLA 944 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 + + +LP + + V + + + Sbjct: 945 MIAVDN----------VLPKQNAKMLLQVHDELVFEVDADKVDHIAK------------- 981 Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLK 664 ++ M N S M + +A +PL Sbjct: 982 ----LIKNAMQNV--------------------------LSDTAKQMGWDVDFA--VPLL 1009 Query: 665 AEGYESKRY 673 E + Sbjct: 1010 VETGVGDNW 1018 >gi|328465601|gb|EGF36830.1| DNA polymerase I [Listeria monocytogenes 1816] Length = 694 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 80/662 (12%), Positives = 181/662 (27%), Gaps = 144/662 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 + +V ++ +E+ T V +++ + + + I Sbjct: 152 IGLTVHSSQGTYFFTKETAESSEVFRKWVESDQ-TKVVYDAKKTMVAMNR---IGLAISG 207 Query: 93 W-ICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 ++ + ++ V + + +E + R+ P Sbjct: 208 ITFDIMLASYLLNPSDSIDDFTSVAIRHDYTEVETDE-----------AVYGKGAKRSTP 256 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202 + + + LE + E L ++ + +G VD Sbjct: 257 EESIVAAHLARKAVAIADLEKRLVDDLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTE 316 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + L++ + SL + ++L LF + GL T+ +T Sbjct: 317 RLENMKVELAGRLKTLEESIHSLAG-EEFNINSPKQLGVILFEKLGLPAVKKTKTGYSTA 375 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL S ++ R + + L++ + + T ++TGR Sbjct: 376 ADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRL 434 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + G K+ Sbjct: 435 SSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKMFS 469 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + +E RVLA ++ ++ + AF+ D++ T F+V +V R K + Sbjct: 470 ADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN-- 527 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ + Sbjct: 528 ------------FGIVYGISDYGLSQ------------------------------NLGI 545 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + + + V E ++ + ++ + I Sbjct: 546 TRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH----------------- 586 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617 R ++ + R +Q + DI+ + M+ Sbjct: 587 -------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMS 630 Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 K ++L VHDE++ E P+ + + +M + +PLK + Sbjct: 631 ERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGD 688 Query: 672 RY 673 + Sbjct: 689 TW 690 >gi|221632712|ref|YP_002521933.1| DNA polymerase I [Thermomicrobium roseum DSM 5159] gi|221156104|gb|ACM05231.1| DNA polymerase I [Thermomicrobium roseum DSM 5159] Length = 917 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 99/691 (14%), Positives = 190/691 (27%), Gaps = 132/691 (19%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMPQVLK 58 D ET L + ++ A H + Q L Sbjct: 323 DLETCQAFALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQLDIEQVLQRLA 382 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVG-EAL 116 L + + AH+ ++ VL+ H T++ A G + LK + L Sbjct: 383 PFLRHPEKQRYAHHGKYDALVLERAG--FPRPHIDFDTMIAAYLLGENAVGLKELAFTKL 440 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 +++ E + R +Y DV T + + L Sbjct: 441 GWEMEEITEL-------------IGRGKKQLTMDRAEIARVTQYACADVEATYRLVEVLR 487 Query: 177 PLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P L + + G +DV L+ ++D + L++ + L Sbjct: 488 PQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYELA 547 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + ++L T LF E GL T+ + Q VL + + P + R Sbjct: 548 GHP-FNINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQLL 606 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + ++ L ++ T+ + TGR S QN+P + + Sbjct: 607 -KLKSTYVDALPRQVHPQTGRVHTIFHQTVAATGRLSSSDPNLQNIPARGELGLAVRRAF 665 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 IA E L+ D + IE R++A + + L+AF Sbjct: 666 IADNRPGYR----------------IADEPILLLSVDYSQIELRLMAHFSQDPALLRAFA 709 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V VT + R I KV+ + Y Q ++ Sbjct: 710 EGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGM-----QAYGLARDTGMSRQD 764 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + + + + E + G R + + Sbjct: 765 AQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGR--RRYLPEITSSNPARRQ---A 819 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + G A K + + R+L R + + Sbjct: 820 AERMAVNMPLQGTAADIMKLAMIAVH----------------RALAERGLRS-------- 855 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 ++ +V E P+++ Sbjct: 856 ----------------------------RMLLQVHDE-----------LVLEVPESELAT 876 Query: 644 ASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + L M+ +PL+ + + Sbjct: 877 TTELVTTRMSRVVE--LSVPLEVDAKAGPNW 905 >gi|88697143|gb|ABD48716.1| thermostable DNA polymerase I [Geobacillus sp. LH8] Length = 876 Score = 327 bits (837), Expect = 5e-87, Method: Composition-based stats. Identities = 86/668 (12%), Positives = 174/668 (26%), Gaps = 143/668 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKA 82 D ++ A + + + L + S F+ V Sbjct: 328 HDAPIVGIALV--NEHGRFFLRAEMALADSQFLAWLADETKKK----SMFDAKRAAVALK 381 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ L+ A V KM++ + + Sbjct: 382 WKGIELRGVA-FDLLLAAYLLNPAQDAGDVAAV-----AKMKQYEAVRPDEAVYGKGA-- 433 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLSSKEQELWY--LDQTINDRG 196 R+ P+ + R E+ + + E + + G Sbjct: 434 -KRSLPDEPTLAEHLVRKAAAIWALERPSLDELRSNEQDGLLIKLEQPLATILAEMEFTG 492 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + + + ++Q + L + ++L LF + L + T+ Sbjct: 493 IKVDTKRLEQMGSELAEQLRAVEQRIYELAGQ-EFNINSPKQLGIILFEKLQLPVLKKTK 551 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + + R + + L++ ++ D T+ Sbjct: 552 TGYSTSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVHPDTGKVHTMFNQAL 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SE 372 ++TGR S QN+P + +R + Sbjct: 611 TQTGRLSSAEPNLQNIPIRLEEGRK-------------------------IRQAFVPSEP 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + AD + IE RVLA +A + ++AF D++ T F+V+ +VT R Sbjct: 646 DWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVTATMRRQA 705 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ A Sbjct: 706 KAVNF--------------GVVYGISDYGLAQ---------------------------- 723 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + V + Q +Q G Sbjct: 724 --NLNITRKEAAEFIERYFASFPGVKRYMETIVQEAKQ---KGYVTTLLH---------- 768 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R D+ + R +Q + DI+ + Sbjct: 769 -------------RRRYLPDITSRNF---NVRSFAERTAMNTP------IQGSAADIIKK 806 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ + ++L VHDE++ E P + L +M A +PLK Sbjct: 807 AMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAV--ALRVPLKV 864 Query: 666 EGYESKRY 673 + + + Sbjct: 865 DYHYGPTW 872 >gi|154482924|ref|ZP_02025372.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC 27560] gi|149736208|gb|EDM52094.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC 27560] Length = 877 Score = 327 bits (837), Expect = 5e-87, Method: Composition-based stats. Identities = 96/672 (14%), Positives = 191/672 (28%), Gaps = 161/672 (23%) Query: 32 LFAFGFDDHPVELWD---CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 + F++ V V + + + +++ + N+ E T+L N DI Sbjct: 333 GVSLCFNNDNVYYIGKEGFVTEDYIIEKVRDLV----------NAKAELTILNIKENNDI 382 Query: 89 ----PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 + A + L + Sbjct: 383 LENDDAESIFDISIAAYLLNPLQNTYDYDDIAREY------------LGMNVPAFDEIFP 430 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTRE----IFKRLEP------LSSKEQELWYLDQT 191 +N+ E +Y + V + + ++L+ ++ E L Y Sbjct: 431 KTKKNETPSDEIPENILKYACYNAYVAYKAKDALTEKLKETEMLDIYNNVEIPLTYALYD 490 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G V + + L++++ + + ++L LF E L Sbjct: 491 MEQAGIMVAGDKLKEYGERLKTGIDALEKDIFAEAGH-EFNINSPKQLGEILFGEMQLPG 549 Query: 252 EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 T+ +T VL + P ++ R ++ + L + D R+ G Sbjct: 550 GKKTKTGYSTSASVLEKLEPDYPFVSKILEYRQ-LAKLKSTYADGLAVYIGEDNRIHGKF 608 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + TGR S QN+P E +R Sbjct: 609 NQ-TITATGRISSTEPNLQNIPVRMPLGRE-------------------------IRKVF 642 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 I EG + AD + IE R+LA M+ ++ + A+ +D++ T + F+V +VTK+Q Sbjct: 643 IPKEGCVFIDADYSQIELRILAHMSDDKNLIDAYNHSKDIHAATASLVFHVPLEEVTKEQ 702 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R+ K + + Y + L++ Sbjct: 703 RSNAKAVNFGIVYGIS-----SFGLSNDLSI----------------------------- 728 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 E+ K + + + L + ++ E G ++ Sbjct: 729 ----------SRKEAEQYIKDYFISYPGIKNY---LDNSVKEAKEKGYSVTM-------- 767 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR ++ + R +Q + D Sbjct: 768 ---------------FGRRRPIPELTSGNFMQRQF---GERVAMNSP------IQGSAAD 803 Query: 609 ILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGL 661 I+ M+N K IVL VHDE++ E + + + M + Sbjct: 804 IMKIAMINVAKELKEKDLKSKIVLQVHDELLIEAYENEVEQVKDILKRNMEQAAH--LNV 861 Query: 662 PLKAEGYESKRY 673 PL + + Sbjct: 862 PLDVDVQVGNNW 873 >gi|222824334|ref|YP_002575908.1| DNA polymerase I [Campylobacter lari RM2100] gi|222539555|gb|ACM64656.1| DNA polymerase I [Campylobacter lari RM2100] Length = 879 Score = 327 bits (837), Expect = 5e-87, Method: Composition-based stats. Identities = 90/699 (12%), Positives = 205/699 (29%), Gaps = 167/699 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-VMPQVLKEAL 61 + D ET ++ ++ F+F + HD + + + Sbjct: 318 IVAFDTETTGLD----------TKEAKIVGFSFCSHESEAFYVPLAHDYLGVCKQISMQA 367 Query: 62 ENTDVTIV------AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG 113 + + HN ++ ++K FNL +P + T++LA + + Sbjct: 368 AKKGIEKIYQSTVIGHNLKYDFEIIKNNFNL-LPPKNYADTMILAWLKEPSLRVNMDVLA 426 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + ++L+ + + +Y D +T + Sbjct: 427 KR--IFDYETLHFEDLVK-------------KGESFAGVDVEKACKYAAEDAYITLRFYL 471 Query: 174 RLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 K E + + + G +D+ +L Q + + L +++ Sbjct: 472 YFLKNLEKSLLELAQKSEFEFIKVLIMMENNGIKLDIQKLESLMQNFNQDIKILSEKIYD 531 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 L + +++ LF + L ++ +T ++VL++ ++ R Sbjct: 532 LAG-EKFNINSPKQVGDILFEKLKLPSGKKSKTGYSTDEKVLNNLIDEHLIIKEILAYR- 589 Query: 282 RASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 ++ L++ D R+ + G + TGR S QN+P + ++ Sbjct: 590 ELAKLVGTYCEPLLKLAKKDENSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY 648 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++C +A EG + D + IE R+LA + ++ L Sbjct: 649 -------------------------KTCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLL 683 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF ED++ T F + R+I K + L Y Sbjct: 684 EAFSNDEDIHAKTAIMIFG----ESNYHTRSIAKSINFGLIY------------------ 721 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + + + + + + Sbjct: 722 --------------------------GMGYKTLSQNLKIEAKLAKEYIEKYFKNFTSIKT 755 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + ++ +Q N + GR + Sbjct: 756 YFEKVKNEAKQ--------------------------NGFIKTLLGRKRYFDFENAKPMQ 789 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVCET 636 Y + + +Q + DI+ M+ K ++L +HDE++ E Sbjct: 790 ----------IAMYERESINSTLQGSAADIIKLAMIKIAKDLDENKRLILQIHDELIFEV 839 Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 D + A +M + + LK +K + Sbjct: 840 KDEFCDEFAKNASDIMENIVK--LKVKLKTSSSIAKNWG 876 >gi|47093102|ref|ZP_00230879.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858] gi|226224166|ref|YP_002758273.1| DNA polymerase I [Listeria monocytogenes Clip81459] gi|254852188|ref|ZP_05241536.1| DNA polymerase I [Listeria monocytogenes FSL R2-503] gi|300764769|ref|ZP_07074759.1| DNA polymerase I [Listeria monocytogenes FSL N1-017] gi|47018542|gb|EAL09298.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858] gi|225876628|emb|CAS05337.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605493|gb|EEW18101.1| DNA polymerase I [Listeria monocytogenes FSL R2-503] gi|300514445|gb|EFK41502.1| DNA polymerase I [Listeria monocytogenes FSL N1-017] Length = 875 Score = 327 bits (837), Expect = 5e-87, Method: Composition-based stats. Identities = 80/662 (12%), Positives = 181/662 (27%), Gaps = 144/662 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 + +V ++ +E+ T V +++ + + + I Sbjct: 333 IGLTVHSSQGTYFFTKETAESSEVFRKWVESDQ-TKVVYDAKKTMVAMNR---IGLAISG 388 Query: 93 W-ICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 ++ + ++ V + + +E + R+ P Sbjct: 389 ITFDIMLASYLLNPSDSIDDFTSVAIRHDYTEVETDE-----------AVYGKGAKRSTP 437 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202 + + + LE + E L ++ + +G VD Sbjct: 438 EESIVAAHLARKAVAIADLEKRLVDDLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTE 497 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + L++ + SL + ++L LF + GL T+ +T Sbjct: 498 RLENMKVELAGRLKTLEESIHSLAG-EEFNINSPKQLGVILFEKLGLPAVKKTKTGYSTA 556 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL S ++ R + + L++ + + T ++TGR Sbjct: 557 ADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRL 615 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + G K+ Sbjct: 616 SSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKMFS 650 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + +E RVLA ++ ++ + AF+ D++ T F+V +V R K + Sbjct: 651 ADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN-- 708 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ + Sbjct: 709 ------------FGIVYGISDYGLSQ------------------------------NLGI 726 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + + + V E ++ + ++ + I Sbjct: 727 TRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH----------------- 767 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617 R ++ + R +Q + DI+ + M+ Sbjct: 768 -------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMS 811 Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 K ++L VHDE++ E P+ + + +M + +PLK + Sbjct: 812 ERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGD 869 Query: 672 RY 673 + Sbjct: 870 TW 871 >gi|291166643|gb|EFE28689.1| DNA polymerase I (POL I) [Filifactor alocis ATCC 35896] Length = 872 Score = 327 bits (837), Expect = 5e-87, Method: Composition-based stats. Identities = 105/689 (15%), Positives = 203/689 (29%), Gaps = 162/689 (23%) Query: 17 TKCGICKYAEDVCVI------------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64 T+ G+ ED ++ + ++ +P+ LKE LE Sbjct: 310 TEIGLIAAIEDGNILTKRIVRLYLLADSITYAVEE-----------ENIPK-LKELLERE 357 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 +V I +N E T LK + +P + + ++ +K+ Sbjct: 358 NVFIYGNNLKREYTALKPY-GITLPKIS-FDSQLAQYILNPS--------EVEQEPEKIG 407 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS---- 180 + E + EY + + ++ + Sbjct: 408 IKYGMPIVSPNLEDLLGKGKKRMSFSMANRVQMDEYFAKILAIISHCKTKMLDMIQEEDT 467 Query: 181 ------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E L + + G V+ + L Q + +QE+ L + Sbjct: 468 KFLFEKIELPLMKVLGEMEYLGIAVNEDVLCELEQEFAKLIVQYEQEIYDLAG-EEFNIN 526 Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF + L + T+ +T +L P ++ + R S+ + Sbjct: 527 SPKQLGVVLFEKLQLPVIKKTKTGYSTGAEILEKLYDKHPIISKILSYRQ-VSKLQSTYV 585 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L+ +N + + + TGR S QN+P + EL Sbjct: 586 IGLLSLINPTSKRIHSTFNQTLTTTGRISSLEPNLQNIPVRTEMGREL------------ 633 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 R +A EG LV AD + IE RVLA MA E+ ++ F D++ Sbjct: 634 -------------RKVFVAKEGYVLVDADYSQIELRVLAHMAQEKKMIEGFHGSMDIHTK 680 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + F+V +VTK+ R+ K + + Y + LN+ Sbjct: 681 TASEVFSVPVEEVTKELRSAAKAVNFGIVYG-----ISDFGLSNNLNI------------ 723 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ + + + + E+ Sbjct: 724 ---------------------------TKKQAKEYIDLYFARYPGIKTYMDTIVKEVEE- 755 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 GR ++ ++ + ++L Sbjct: 756 -------------------------LGYSTTLCGRRRYIPEIKSSNFIVKNMGKRL---- 786 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ M K ++VL VHDE++ E + D Sbjct: 787 -----AMNTPIQGSAADIIKIAMNRVFEWLKTEKIDAELVLQVHDELLLEVREDDAKYVR 841 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + LM W+ +PLK + + Sbjct: 842 DKVIELMEGA--WSMDVPLKVDATIGDSW 868 >gi|149182832|ref|ZP_01861293.1| DNA polymerase I [Bacillus sp. SG-1] gi|148849447|gb|EDL63636.1| DNA polymerase I [Bacillus sp. SG-1] Length = 875 Score = 327 bits (837), Expect = 5e-87, Method: Composition-based stats. Identities = 84/668 (12%), Positives = 188/668 (28%), Gaps = 145/668 (21%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 + ++ + + + + + K+ + + +++ L+ + Sbjct: 328 NGEIVGISMR--NGSGNYFFTLETALASDAFKKWAADEKMKKSVYDAKRSIVALRRQ-GV 384 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 ++ L+++ + K + G +I E + Sbjct: 385 ELTGVE-FDLLIVSYILNPAESADDFAGVAK------KHGASVIE---SDEAVYGKGAKR 434 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRG 196 K E E+ V E+ E + + + + G Sbjct: 435 KVPEEEKLA---EHLARKANVVYELKSTCEEALKENDQYQLFTDLELPLAIILADMEYTG 491 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VDV + + ++++++ L + ++L LF + L + T+ Sbjct: 492 VGVDVDRLKEMKSELAERLDEMEKKIYELAG-EEFNINSPKQLGVILFEKLELPVIKKTK 550 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + + + R + + L++ ++ D T Sbjct: 551 TGYSTSADVLEKLQSKHEIIDHILHYRQ-LGKLQSTYIEGLLKVIHEDSNKVHTRFNQAL 609 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372 ++TGR S QN+P + +R I SE Sbjct: 610 TQTGRLSSTDPNLQNIPIRLEEGRK-------------------------IRQAFIPSEK 644 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + AD + IE RVLA +AG++ + AF G D++ T F+V VT + R Sbjct: 645 NWLMFAADYSQIELRVLAHIAGDEKLIHAFNEGMDIHTKTAMDVFHVDADSVTSNMRRHA 704 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + G++ + Sbjct: 705 KAVNFGIV--------------YGISDFGLSQ---------------------------- 722 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + V E +++ +Q Sbjct: 723 --SLGITRKEAGEFIQRYLDSYPGVQEYMDDIISEAKQ---------------------- 758 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 N + R ++ + R +Q + DI+ + Sbjct: 759 ----NGFVKTLLQRRRYIPEITSRNF---NLRSFAERTAMNTP------IQGSAADIIKK 805 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ ++L VHDE++ E P+ + + +M + +PLK Sbjct: 806 AMIDMAARLEKENLQTRLLLQVHDELIFEAPEDEIERLKEIVPEVMENAVE--LEVPLKV 863 Query: 666 EGYESKRY 673 + + Sbjct: 864 DYSYGPTW 871 >gi|46907796|ref|YP_014185.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365] gi|254824376|ref|ZP_05229377.1| DNA polymerase I [Listeria monocytogenes FSL J1-194] gi|254931505|ref|ZP_05264864.1| DNA polymerase I [Listeria monocytogenes HPB2262] gi|255520153|ref|ZP_05387390.1| DNA polymerase I [Listeria monocytogenes FSL J1-175] gi|46881065|gb|AAT04362.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365] gi|293583057|gb|EFF95089.1| DNA polymerase I [Listeria monocytogenes HPB2262] gi|293593611|gb|EFG01372.1| DNA polymerase I [Listeria monocytogenes FSL J1-194] gi|328474918|gb|EGF45718.1| DNA polymerase I [Listeria monocytogenes 220] gi|332312007|gb|EGJ25102.1| DNA polymerase I [Listeria monocytogenes str. Scott A] Length = 875 Score = 326 bits (836), Expect = 6e-87, Method: Composition-based stats. Identities = 80/662 (12%), Positives = 181/662 (27%), Gaps = 144/662 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 + +V ++ +E+ T V +++ + + + I Sbjct: 333 IGLTVHSSQGTYFFTKETAESSEVFRKWVESDQ-TKVVYDAKKTMVAMNR---IGLAISG 388 Query: 93 W-ICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 ++ + ++ V + + +E + R+ P Sbjct: 389 ITFDIMLASYLLNPSDSIDDFTSVAIRHDYTEVETDE-----------AVYGKGAKRSTP 437 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202 + + + LE + E L ++ + +G VD Sbjct: 438 EESIVAAHLARKAVAIADLEKRLVDDLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTE 497 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + L++ + SL + ++L LF + GL T+ +T Sbjct: 498 RLENMKVELAGRLKTLEESIHSLAG-EEFNINSPKQLGVILFEKLGLPAVKKTKTGYSTA 556 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL S ++ R + + L++ + + T ++TGR Sbjct: 557 ADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRL 615 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + G K+ Sbjct: 616 SSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKMFS 650 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + +E RVLA ++ ++ + AF+ D++ T F+V +V R K + Sbjct: 651 ADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN-- 708 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ + Sbjct: 709 ------------FGIVYGISDYGLSQ------------------------------NLGI 726 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + + + V E ++ + ++ + I Sbjct: 727 TRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH----------------- 767 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617 R ++ + R +Q + DI+ + M+ Sbjct: 768 -------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMS 811 Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 K ++L VHDE++ E P+ + + +M + +PLK + Sbjct: 812 ERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGD 869 Query: 672 RY 673 + Sbjct: 870 TW 871 >gi|319760727|ref|YP_004124665.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF] gi|318039441|gb|ADV33991.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF] Length = 950 Score = 326 bits (836), Expect = 6e-87, Method: Composition-based stats. Identities = 96/656 (14%), Positives = 202/656 (30%), Gaps = 137/656 (20%) Query: 38 DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97 +++ W + + +LK LEN + + HN F ++LK N+ + + Sbjct: 408 NNNDTYQWYL-NLTEVLSILKPILENIKIKKIGHNMKFIFSLLKQH-NIHLS-GPIFDVI 464 Query: 98 VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR-- 155 + S + + L K + ++ L +N + + Sbjct: 465 LELYVLYGTSNYQNIKRFLN----KTTILDHIFKFQQIYNNNKYLIKKNIRDIQLESSCS 520 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQ-------ELWYLDQTINDRGYCVDVALAHTLN 208 Y + + ++ ++ + ++ L + I D G +D ++ + Sbjct: 521 TQLIYAI--SNLHQILWTEIKQHNELKKIFINIEIPLISVLSRIEDYGVLIDKKFLYSHS 578 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLS 264 ++ + L + LT + ++L+ L+ + L + T +T + VL Sbjct: 579 IKLNSQLNNLKTQAYQLTGSS-FNLDSPKQLQEILYNQEKLPIFKKTPHGAPSTSEEVLK 637 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K + R S+ N L+ +N T + TGR S Sbjct: 638 KLSKKHSIPKIILKYR-SLSKLKSTYTNKLISMINKKSNRIHTSYNQTRTSTGRLSSTNP 696 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P + + +R IA E ++ AD + I Sbjct: 697 NLQNIPNRNYDGRK-------------------------IRQAFIAPENSLIISADYSQI 731 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ + + F +D++ TT + F + VT +QR K + L Y Sbjct: 732 ELRIMAHLSRDLKLINDFLEEKDIHTTTASEIFVTSLHLVTGEQRQRAKTVNFGLIYGMT 791 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 A + L+ + Sbjct: 792 A-----FGLSKQLS---------------------------------------VTCQEAQ 807 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + + Q++ V + + ++ N + Sbjct: 808 KYVDRYFQRYPGVMQYMQYIKDYAKK--------------------------NGYVSTLD 841 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------T 618 GR L D+ ++ + + R +Q + DI+ M++ Sbjct: 842 GRKLYLPDIYSSNI---SQKKGAERSAINAP------MQGSAADIIKRAMISIDSWLQTD 892 Query: 619 KAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++ VHDE+V E +T + LM + +PLK + K + Sbjct: 893 NIPVHMIMQVHDELVFEVNNTFVDIAVKQIRKLMEEC--FILNVPLKVDIGVGKNW 946 >gi|257066818|ref|YP_003153074.1| DNA polymerase I [Anaerococcus prevotii DSM 20548] gi|256798698|gb|ACV29353.1| DNA polymerase I [Anaerococcus prevotii DSM 20548] Length = 879 Score = 326 bits (835), Expect = 8e-87, Method: Composition-based stats. Identities = 96/669 (14%), Positives = 203/669 (30%), Gaps = 143/669 (21%) Query: 22 CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81 +Y + D P + D D KE E+ ++ + + + +L Sbjct: 327 DRYIHS-EIYKLGIKTTDTPTYIID--PDSDFVSKFKEIFEDEEIVKNSFDIKEDVVLLD 383 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 +++ + + +++ + + K+ L Sbjct: 384 K-LGINLKL-PYDDMMLMHYLIDPSRSSYDL---------KVLSQSYLDYEVKSPVDLLG 432 Query: 142 LYDRNKPNHREAWRLFGEY------CKGDVTVTREIFKRLEPLSSKEQEL----WYLDQT 191 + + G Y D E + +E+ + Sbjct: 433 KGKKALKYQDLDFDELGNYLASGINAIEDSKEILEDKLDEYHMLDLYKEIEIKLSKVLAD 492 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G+ D + L + +D + K+ +E+ L + ++L LF + L + Sbjct: 493 MEIVGFVTDKKVLEDLKENIDKDIDKITEEIYELAGS-EFNINSTKQLGEVLFKDLDLPV 551 Query: 252 EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 T+ +T +VL + ++ R + + L +A++ DGR+R T Sbjct: 552 IKKTKTGFSTNAQVLEKLRDKHQIIPKIERYR-ELFKLRSTYIEGLEKAIDEDGRIRSTF 610 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + A+ TGR S QNLP + +R Sbjct: 611 RQNIAA-TGRLSSQDPNLQNLPIKTDEGR-------------------------LIRKAF 644 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 A EGK L+ AD + IE R+LA ++G++ + AF+ G D++ T ++ F+ +VTK Q Sbjct: 645 RAEEGKILIDADYSQIELRILASLSGDRHMIDAFKEGVDIHTKTASKVFHTDLDKVTKRQ 704 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R+ K + + Y GL+ Sbjct: 705 RSEAKAVNFGIIYGIS---------DYGLS------------------------------ 725 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + + + + E + + + ++ Sbjct: 726 -----QNLNIPRKEAKEYIDNYMASYPSIKEYMDSIVEKAKE------------------ 762 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + + R ++ + + + ++ +Q + D Sbjct: 763 --------DGYVETLFKRRRYVPEINSRNFNVRSFGQR---------VALNTPIQGTAAD 805 Query: 609 ILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL 661 I+ M+ K IVL +HDEI+ E ++ + +L M + + Sbjct: 806 IIKIAMIETDKNLKKAGLDAKIVLQIHDEIILEADESSKDEAIKILRESMENATD--LEV 863 Query: 662 PLKAEGYES 670 PL + Sbjct: 864 PLIVDIDTG 872 >gi|228475217|ref|ZP_04059943.1| DNA polymerase I [Staphylococcus hominis SK119] gi|228270828|gb|EEK12230.1| DNA polymerase I [Staphylococcus hominis SK119] Length = 878 Score = 326 bits (835), Expect = 8e-87, Method: Composition-based stats. Identities = 102/663 (15%), Positives = 208/663 (31%), Gaps = 131/663 (19%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81 Y +D ++ F F +D + D + P+ L + LEN + V +++ F V+ Sbjct: 330 YLKD-DILKFGF-YDKERYIVVDADNIKDYPE-LIKWLENENSKKVVYDAKKTF---VIA 383 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 N++I + ++ + + V +++ KE ++ + KG+ Sbjct: 384 HRLNINIQ-NIVFDAMLASYIFDPSRTIDDV--YSVVTNYHQTYVKEDVSIYGKGKKRHV 440 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 H + + K + E +++ L E L + + + G DV Sbjct: 441 PDTEILNTHIASITKSIDAVKPLMEKELESHQQMNLLKDLELPLARILSKMEEIGIYTDV 500 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 + Q + + L Q + + ++L LF L + T+ +T Sbjct: 501 NDLQHMQQELQEKLELLVQRIHDAAG-EEFNINSPKQLGVVLFETLKLPVIKKTKTGYST 559 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + P + R ++ + L + +++D R+ A +TGR Sbjct: 560 AVDVLEQLQNEHPIINDILEYRQ-LAKLQSTYVEGLQKVISNDKRIHTRFNQTLA-QTGR 617 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377 S QN+P + +R S E ++ Sbjct: 618 LSSVDPNLQNIPIRLEEGRK-------------------------IRKAFKPSSEDSVIL 652 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA + + +AF G+D++ T + F V +VT R K + Sbjct: 653 SADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMRRQAKAVNF 712 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y + LN+ + + + + + + ++ + + Sbjct: 713 GIVYGIS-----DYGLSQSLNITRKEAKIFIDDYLASFPGVKQYMSDIVKDAKANGYVET 767 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 +RR +P + + Sbjct: 768 L-----------------------------------------LHRRRYIPDITSRNFNLR 786 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R+ +NT +Q + DI+ M+ Sbjct: 787 GF---------------AERTAMNT------------------PIQGSAADIIKLAMVEF 813 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYES 670 K ++L VHDE++ E P ++ S+ +M +PLK + Sbjct: 814 DKQVQHTSYKAKLLLQVHDELIFEVPKSEVEEFSLFVEDIMEHALD--LDVPLKVDSNYG 871 Query: 671 KRY 673 + Sbjct: 872 PTW 874 >gi|217964288|ref|YP_002349966.1| DNA polymerase type I [Listeria monocytogenes HCC23] gi|217333558|gb|ACK39352.1| DNA polymerase type I [Listeria monocytogenes HCC23] Length = 875 Score = 326 bits (835), Expect = 9e-87, Method: Composition-based stats. Identities = 80/662 (12%), Positives = 180/662 (27%), Gaps = 144/662 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 + + +E +E+ T V +++ + + + I Sbjct: 333 IGLTVHSSQGTYFFTKETAENSEAFREWVESEQ-TKVVYDAKKTMVAMNR---IGLAISG 388 Query: 93 W-ICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 ++ + ++ V + + +E + R+ P Sbjct: 389 ITFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDE-----------AVYGKGAKRSTP 437 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202 + + + LE + E L ++ + +G VD Sbjct: 438 EESIVASHLARKAVAIADLEKRLVADLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTE 497 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + L++ + SL + ++L LF + GL T+ +T Sbjct: 498 RLENMKVELAGRLKTLEESIHSLAG-EAFNINSPKQLGVILFEKLGLPAVKKTKTGYSTA 556 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL S ++ R + + L++ + + T ++TGR Sbjct: 557 ADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRL 615 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + G K+ Sbjct: 616 SSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKMFS 650 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + +E RVLA ++ ++ + AF+ D++ T F+V +V R K + Sbjct: 651 ADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN-- 708 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ + Sbjct: 709 ------------FGIVYGISDYGLSQ------------------------------NLGI 726 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + + + V E ++ + ++ + I Sbjct: 727 TRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH----------------- 767 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617 R ++ + R +Q + DI+ + M+ Sbjct: 768 -------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMS 811 Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 K ++L VHDE++ E P+ + + +M + +PLK + Sbjct: 812 ERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGD 869 Query: 672 RY 673 + Sbjct: 870 TW 871 >gi|169829549|ref|YP_001699707.1| DNA polymerase I [Lysinibacillus sphaericus C3-41] gi|83637842|gb|ABC33726.1| DNA polymerase I [Lysinibacillus sphaericus C3-41] gi|168994037|gb|ACA41577.1| DNA polymerase I [Lysinibacillus sphaericus C3-41] Length = 875 Score = 326 bits (835), Expect = 9e-87, Method: Composition-based stats. Identities = 87/648 (13%), Positives = 185/648 (28%), Gaps = 125/648 (19%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 ++ A D + +L+ LE++ +S + LK + + Sbjct: 331 LLGMALS-DGTKTQYIPFEIAAK-SDILRRWLEDSSKIKYMSDSKASKAALKRA-GIQLA 387 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 ++ + N + V + + E + + KG Sbjct: 388 GVD-FDLVLASYINNPGLSGDDVATLARELGYYDVQADETV--YGKGAKRAVPEIDKLAQ 444 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 H + + + ++ + E L + + G V+ A + Q Sbjct: 445 HVSRKAYAVWSLQPKLEALLKENEQFDLYKELELPLAAILGEMESEGITVNRATLEKMGQ 504 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266 ++ + L+QE+ + + ++L LF + GL + T+ +T VL Sbjct: 505 ELNDKLVVLEQEIYAEAG-ETFNINSPKQLGVILFDKLGLPVIKKTKTGYSTAADVLEKL 563 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 K + R + + L++ ++ T + TGR S Sbjct: 564 KSEHAIIEYILLYRQ-LGKLQSTYIEGLLKEIHEKDSKVHTRFQQALTATGRLSSTDPNL 622 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIE 385 QN+P + +R + E L AD + IE Sbjct: 623 QNIPIRLEEGRK-------------------------IRQAFVPSKEDWILFSADYSQIE 657 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RVLA M+ ++ ++AF G D++ T F+V+ +V + R K + + Sbjct: 658 LRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEEEVDSNMRRAAKAVNFGIV----- 712 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ + + Sbjct: 713 ---------YGISDYGLSQNLDI------------------------------TRKEAAT 733 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + + V + +++ + NG Sbjct: 734 FIEKYFASFPGVKQYMDDI---VQNAKFNGYVTTILN----------------------- 767 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620 R D+ ++ R +Q + DI+ + M++ Sbjct: 768 RRRYLPDITSSNF---NLRSFAERTAMNTP------IQGSAADIIKKAMIDMDARLKKEN 818 Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 ++L VHDE++ E P + + +M + +PLK + Sbjct: 819 MQAKLLLQVHDELIFEAPKEEIAMLEKIVPEVMENAIE--LSVPLKVD 864 >gi|209360708|gb|ACI43006.1| DNA polymerase I [Anoxybacillus sp. NB] Length = 878 Score = 326 bits (835), Expect = 9e-87, Method: Composition-based stats. Identities = 86/676 (12%), Positives = 176/676 (26%), Gaps = 159/676 (23%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERT---VLK 81 D ++ A + + + + L + S F+ V Sbjct: 330 HDAPIVGIALVNEHGR---FSLRAEMALADPQFVAWLADETKKK----SMFDAKRASVAL 382 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 +++ L+ A V KM++ + + Sbjct: 383 KWKGIELRGVA-FDLLLAAYLLNPAQDAGDVAAV-----AKMKQYEAVRPDEAVYGKGA- 435 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------------EQELWYL 188 R+ P+ I+ P + EQ L + Sbjct: 436 --KRSLPDEPTLAEHLVRKAA-------AIWALERPFLDELRSNEQDELLIKLEQPLATI 486 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G VD + + + ++Q + L + ++L LF + Sbjct: 487 LAEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYELAGQ-EFNINSPKQLGIILFEKLQ 545 Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+ +T VL + + R + + L++ ++ D Sbjct: 546 LPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVHHDTGKV 604 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 T+ ++TGR S QN+P + +R Sbjct: 605 HTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRK-------------------------IR 639 Query: 366 SCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 + G + AD + IE RVLA +A + ++AF D++ T F+V+ +V Sbjct: 640 QAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEV 699 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T R K + G++ A Sbjct: 700 TATMRRQAKAVNF--------------GIVYGISDYGLAQ-------------------- 725 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + V + ++ + G Sbjct: 726 ----------NLNITRKEAAEFIERYFASFPGVKRYMETI---VQEAKQKGYVTTLLH-- 770 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 R + D+ + R +Q Sbjct: 771 ---------------------RRRYFPDITSRNF---NVRSFAERTAMNTP------IQG 800 Query: 605 VSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657 + DI+ + M++ + ++L VHDE++ E P + L +M Sbjct: 801 SAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAVE- 859 Query: 658 AKGLPLKAEGYESKRY 673 +PLK + + + Sbjct: 860 -LRVPLKVDYHYGPTW 874 >gi|307571146|emb|CAR84325.1| DNA polymerase I [Listeria monocytogenes L99] Length = 885 Score = 326 bits (835), Expect = 1e-86, Method: Composition-based stats. Identities = 80/662 (12%), Positives = 180/662 (27%), Gaps = 144/662 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 + + +E +E+ T V +++ + + + I Sbjct: 343 IGLTVHSSQGTYFFTKETAENSEAFREWVESEQ-TKVVYDAKKTMVAMNR---IGLAISG 398 Query: 93 W-ICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 ++ + ++ V + + +E + R+ P Sbjct: 399 ITFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDE-----------AVYGKGAKRSTP 447 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202 + + + LE + E L ++ + +G VD Sbjct: 448 EESIVASHLARKAVAIADLEKRLVADLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTE 507 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + L++ + SL + ++L LF + GL T+ +T Sbjct: 508 RLENMKVELAGRLKTLEESIHSLAG-EAFNINSPKQLGVILFEKLGLPAVKKTKTGYSTA 566 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL S ++ R + + L++ + + T ++TGR Sbjct: 567 ADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRL 625 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + G K+ Sbjct: 626 SSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKMFS 660 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + +E RVLA ++ ++ + AF+ D++ T F+V +V R K + Sbjct: 661 ADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN-- 718 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ + Sbjct: 719 ------------FGIVYGISDYGLSQ------------------------------NLGI 736 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + + + V E ++ + ++ + I Sbjct: 737 TRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH----------------- 777 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617 R ++ + R +Q + DI+ + M+ Sbjct: 778 -------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMS 821 Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 K ++L VHDE++ E P+ + + +M + +PLK + Sbjct: 822 ERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGD 879 Query: 672 RY 673 + Sbjct: 880 TW 881 >gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4] gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Thermoanaerobacter tengcongensis MB4] Length = 871 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 94/678 (13%), Positives = 198/678 (29%), Gaps = 146/678 (21%) Query: 17 TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76 + V AF FD D + L++ E D V+H + Sbjct: 315 KNVAFYPLIYEGDVKKIAFSFD-GTTLYSDVER----LEDLRKIFEREDAEFVSHEIK-D 368 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136 V + ++ +++ T ++A + + LK + E Sbjct: 369 FLVKLSYKGIECK-SKYLDTAIMAYLLNPSESNYDLERVLKRYLKVDILSHE-------- 419 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL----------SSKEQELW 186 + + + EY G + E+ +L E L Sbjct: 420 -EVFGKGKDRRRYEEVSEEVMAEYICGRCSHLFELKDKLMAFIEEMDMKKLLLEIEMPLV 478 Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + +++ G+ +D + L++ +D +++ ++ + ++L +LF + Sbjct: 479 EVLKSMEVDGFTLDRNVLKELSEKIDERISEILDKIYKEAGYQ-FNVNSPKQLGEFLFEK 537 Query: 247 TGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 L + T+ +T VL ++ R ++ + + M+ + R Sbjct: 538 LNLPVIKKTKTGYSTDSEVLEQLTAYNDIVSEIIEYRQ-LTKLKSTYIEGFLPLMDENDR 596 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + + + A+ TGR S QN+P Sbjct: 597 VHSNFKQMVAA-TGRISSTEPNLQNIPVREEFGR-------------------------Q 630 Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R I + +V AD + IE RVLA ++ ++ ++AF ED+++ T + F V P Sbjct: 631 IRRAFIPRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQ 690 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 VT + R G++ Sbjct: 691 NVTPEMRRAA--------------KVVNFGIIYGISD----------------------- 713 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 A + + + +K+ V E ++ + ++ Sbjct: 714 -------YGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKE------------ 754 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 N + R ++ + T Q R + Sbjct: 755 --------------NGYVTTIMNRRRYIPEINSRNF---TQRSQAERLAMNTP------I 791 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNP 655 Q + DI+ M+ + ++L VHDE+V +T + + M + Sbjct: 792 QGSAADIIKMAMVKVYQEFKRLNLKSRLILQVHDELVVDTYKDELELVKEILKENMENVI 851 Query: 656 SWAKGLPLKAEGYESKRY 673 +PL E + Sbjct: 852 K--LKVPLVVEIGVGPNW 867 >gi|138896291|ref|YP_001126744.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2] gi|134267804|gb|ABO67999.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2] Length = 878 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 81/664 (12%), Positives = 175/664 (26%), Gaps = 135/664 (20%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKA 82 D ++ A + + + L + S F+ V Sbjct: 330 HDAPIVGIALV--NEHGRFFMRPETALADSQFLAWLADETKKK----SMFDAKRAVVALK 383 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ L+ A + K+ + E + + KG Sbjct: 384 WKGIELRGVA-FDLLLAAYLLNPAQDAGDIAAVAKMKQYEAVRSDEAV--YGKGVKRSLP 440 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200 ++ H + ++ + + E + + G VD Sbjct: 441 DEQTLAEHLVRKAAAIWALEQ--PFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVD 498 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + + + ++Q + L + ++L LF + L + T+ + Sbjct: 499 TKRLEQMGSELAEQLRAIEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTKTGYS 557 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL + + R + + L++ + D T+ ++TG Sbjct: 558 TSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTGKVHTMFNQALTQTG 616 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKL 376 R S QN+P + +R + + Sbjct: 617 RLSSAEPNLQNIPIRLEEGRK-------------------------IRQAFVPSEPDWLI 651 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 AD + IE RVLA +A + ++AF+ D++ T F+V+ +VT + R K + Sbjct: 652 FAADYSQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVN 711 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ A Sbjct: 712 F--------------GIVYGISDYGLAQ------------------------------NL 727 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + V + ++ + G Sbjct: 728 NITRKEAAEFIERYFASFPGVKQYM---ENIVQEAKQKGYVTTLLH-------------- 770 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R D+ + R +Q + DI+ + M++ Sbjct: 771 ---------RRRYLPDITSRNF---NVRSFAERTAMNTP------IQGSAADIIKKAMID 812 Query: 617 A------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 + ++L VHDE++ E P + L +M + +PLK + + Sbjct: 813 LAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQAVT--LRVPLKVDYHY 870 Query: 670 SKRY 673 + Sbjct: 871 GPTW 874 >gi|196249912|ref|ZP_03148607.1| DNA polymerase I [Geobacillus sp. G11MC16] gi|1205984|gb|AAB52611.1| DNA polymerase I [Geobacillus stearothermophilus] gi|196210426|gb|EDY05190.1| DNA polymerase I [Geobacillus sp. G11MC16] Length = 876 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 81/664 (12%), Positives = 175/664 (26%), Gaps = 135/664 (20%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKA 82 D ++ A + + + L + S F+ V Sbjct: 328 HDAPIVGIALV--NEHGRFFMRPETALADSQFLAWLADETKKK----SMFDAKRAVVALK 381 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ L+ A + K+ + E + + KG Sbjct: 382 WKGIELRGVA-FDLLLAAYLLNPAQDAGDIAAVAKMKQYEAVRSDEAV--YGKGVKRSLP 438 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200 ++ H + ++ + + E + + G VD Sbjct: 439 DEQTLAEHLVRKAAAIWALEQ--PFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVD 496 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + + + ++Q + L + ++L LF + L + T+ + Sbjct: 497 TKRLEQMGSELAEQLRAIEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTKTGYS 555 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL + + R + + L++ + D T+ ++TG Sbjct: 556 TSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTGKVHTMFNQALTQTG 614 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKL 376 R S QN+P + +R + + Sbjct: 615 RLSSAEPNLQNIPIRLEEGRK-------------------------IRQAFVPSEPDWLI 649 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 AD + IE RVLA +A + ++AF+ D++ T F+V+ +VT + R K + Sbjct: 650 FAADYSQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVN 709 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ A Sbjct: 710 F--------------GIVYGISDYGLAQ------------------------------NL 725 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + V + ++ + G Sbjct: 726 NITRKEAAEFIERYFASFPGVKQYM---ENIVQEAKQKGYVTTLLH-------------- 768 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R D+ + R +Q + DI+ + M++ Sbjct: 769 ---------RRRYLPDITSRNF---NVRSFAERTAMNTP------IQGSAADIIKKAMID 810 Query: 617 A------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 + ++L VHDE++ E P + L +M + +PLK + + Sbjct: 811 LAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQAVT--LRVPLKVDYHY 868 Query: 670 SKRY 673 + Sbjct: 869 GPTW 872 >gi|154498262|ref|ZP_02036640.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC 29799] gi|150272809|gb|EDM99977.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC 29799] Length = 889 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 100/633 (15%), Positives = 193/633 (30%), Gaps = 134/633 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGLPSA---LKAV 112 + +AL D+ H+ T+L + T + A L+ + Sbjct: 370 VLKALFAADIKKNTHDVK---TLLSRLLEEGVEGDGFVFDTAIAAYLLAPTDGSYELEKL 426 Query: 113 G-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV-TRE 170 G K ++ F + + L + + Sbjct: 427 GITYFNQEFAKAKDTYLAPDAFSPLADQTAVLGGMLSHCALIGALKKVLAPRLEELGMHQ 486 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++ E L + + G VD ++D E+ L Sbjct: 487 LYY------DIELPLCQVLSAMEHAGMLVDRKALSEFGDMLDERIAADQAEIYELAG-ET 539 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF + GL T+ +T VL + P ++ R ++ Sbjct: 540 FNINSTQQLGKILFDKLGLPPVKKTKTGYSTNAEVLEKLRGQHPIIDKILEYRQY-TKLK 598 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 ++ L + + DGR+ + + TGR S QN+P + Sbjct: 599 STYVDGLGKVIAPDGRIHTSF-QNTVTATGRLSSTEPNLQNIPVRTE------------- 644 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + +R +A GK LV AD + IE R+LA +AG++ ++AF TGED Sbjct: 645 ------------LGAELRKMFVAPAGKVLVDADYSQIELRLLAHIAGDEHMIEAFRTGED 692 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T A+ F V QVTK R+ K + + Y G++ + + + Sbjct: 693 IHTVTAAQVFGVPVDQVTKHMRSSAKAVNFGIVY--------------GISAFSLSQDIG 738 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + + + + S V ++ Sbjct: 739 VPTY------------------------------EAKEYIEKYFARFSGVHAYMTDVVNR 768 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + + + GR ++ ++ T Sbjct: 769 AKT--------------------------DGYVSTLFGRRRWLPELKSSNF---NTRSFG 799 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDE 641 R +Q + DI+ M++ ++L VHDE++ E P+ + Sbjct: 800 ERVALNMP------IQGTAADIMKLAMLHVHSRLREEGLQARLILQVHDELIVECPEEEA 853 Query: 642 FNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +L M S A +PL A+ + + Sbjct: 854 ETVKALLSREMESVAQLA--VPLIADAAAGRSW 884 >gi|209360706|gb|ACI43005.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 88/676 (13%), Positives = 176/676 (26%), Gaps = 159/676 (23%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERT---VLK 81 D ++ A + + + + L + S F+ V Sbjct: 330 HDAPIVGIALVNEHGR---FSLRAEMALADPQFVAWLADETKKK----SMFDAKRASVAL 382 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 +++ L+ A V KM++ + + Sbjct: 383 KWKGIELRGVA-FDLLLAAYLLNPAQDAGDVAAV-----AKMKQYEAVRPDEAVYGKGA- 435 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------------EQELWYL 188 R+ P+ I+ P + EQ L + Sbjct: 436 --KRSLPDEPTLAEHLVRKAA-------AIWALERPFLDELRSNEQDELLIKLEQPLATI 486 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G VD + + + ++Q + L + ++L LF + Sbjct: 487 LAEMEFTGVKVDTKRLEQMGSELAEQLGAIEQRIYELAGQ-EFNINSPKQLGIILFEKLQ 545 Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+ +T VL + + R + + L++ ++ D Sbjct: 546 LPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVHHDTGKV 604 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 T+ ++TGR S QN+P + +R Sbjct: 605 HTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRK-------------------------IR 639 Query: 366 SCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 + G + AD + IE RVLA +A + ++AF D++ T F+V+ +V Sbjct: 640 QAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEV 699 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T R K + G++ A Sbjct: 700 TATMRRQAKAVNF--------------GIVYGISDYGLAQ-------------------- 725 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + V + Q +Q G Sbjct: 726 ----------NLNITRKEAAEFIERYFASFPGVKRYMETIVQEAKQ---KGYVTTLLH-- 770 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 R + D+ + R +Q Sbjct: 771 ---------------------RRRYFPDITSRNF---NVRSFAERTAMNTP------IQG 800 Query: 605 VSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657 + DI+ + M++ + ++L VHDE++ E P + L +M Sbjct: 801 SAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAVE- 859 Query: 658 AKGLPLKAEGYESKRY 673 +PLK + + + Sbjct: 860 -LRVPLKVDYHYGPTW 874 >gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86] gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86] Length = 948 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 94/694 (13%), Positives = 205/694 (29%), Gaps = 149/694 (21%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59 + D ET L + ++ +F F+ + + K Sbjct: 376 VCFDTETTGIDAL----------NAQLVGMSFSFEKGKAFYVPFPENQEDAQVLADKFKP 425 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117 E+ + + N ++ +L + + I + T++ + + E Sbjct: 426 FFESESIEKIGQNIKYDLKILS-HYGVQIK-GKLFDTMIAHYLINPDMRHNMDVLSETY- 482 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + ++LI + K + EY D +T ++ + P Sbjct: 483 -LKYSPKSIEDLIGK---------KGKNQKSMRDVSLEEIKEYAAEDADITYQLKQNFSP 532 Query: 178 LSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + K + L + + G +DV +++ + +E L+Q++ T Sbjct: 533 ILDKAETKKLFEEIEIPLIPVLAAMELEGINLDVPFLKSMSAEMALESNALEQKIYE-TA 591 Query: 228 GLVSSSRCLEKLKTWLFLETGL------HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L LF + + + T + +LS P + R Sbjct: 592 GEKFNLASPKQLGDVLFDKMKIGGAKQKKTKTGQYATGEEILSYLANDNPIVKDILEWRQ 651 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ L ++ T + TGR S QN+P + Sbjct: 652 MV-KLQSTYIDALPNQVDKKTGRVHTDYMQTVAATGRLSSNNPNLQNIPVRTERGR---- 706 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I E L+ AD + IE R++A ++GE+ + Sbjct: 707 ---------------------LIRKAFIPRNENYTLISADYSQIELRIIAALSGEENMIA 745 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ +D++ +T A+ FNVA VTK+QR+ K + + Y A + +L+ Sbjct: 746 AFQNNQDIHKSTAAKVFNVALEDVTKEQRSNAKTVNFGIIYGVSA-----FGLSNQTSLS 800 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 ++ + +++ + E+ +G R K + V Sbjct: 801 RKESAELIDAYYATYPKLKSYMSNQVDFARENGYVQTVLGR--RRYLKDINSANMMVKS- 857 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + G A K + ++ + Sbjct: 858 --GAERNAVNAPIQGSAADIIKIAMI-------------------------NIHKKLTQE 890 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 N ++ ++ +V + +++ Sbjct: 891 NWQSKM---------------------------LLQVHDE-----------LVFDVHNSE 912 Query: 641 EFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 M+ + M + +PL E K + Sbjct: 913 LEKIQPMIKYEMENAFK--IDVPLDVEIGIGKNW 944 >gi|115424490|dbj|BAF33373.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 942 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 95/662 (14%), Positives = 181/662 (27%), Gaps = 147/662 (22%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERTVLKACF-- 84 + A + ++ L + D VA F+ + Sbjct: 408 AEIRGMAVAT-PKRAYYV--RFGERLELSDVRPWLVS-DRPKVA----FDLKSMAFALDA 459 Query: 85 -NLDIPIH-RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 + + W + A GE E G+EL E Sbjct: 460 HGIGLTSECGWQDVKLAAYLLNP-----QDGEVELSDVFARERGQEL------PAWEEGE 508 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 ++ E T + + E L ++ + G+ V+ Sbjct: 509 REKWLAYTASQLPPLFESLA----YTIRMQEMERLYQEVELPLAFVLAKMEITGFYVNRE 564 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 Q + ++ QE+ L + ++L LF + GL T+ +T Sbjct: 565 KLVAFGQELTERIKRITQEIYDLAGTS-FNLNSPKQLGEILFDKLGLPALKKTKTGYSTS 623 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + ++ + R+ ++ + L++ + + T + TGR Sbjct: 624 ADVLEKLAPMHEIVQKILDYRL-LAKLQSTYVEGLLKVIRKETGRVHTRFHQTLTATGRL 682 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVV 378 S QN+P L R + + + Sbjct: 683 SSSEPNLQNIPIRLEEGRRL-------------------------RQVFEPTYKDWVIFA 717 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R+LA ++G++ + AF D++ T A F V P QVT R K + Sbjct: 718 ADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNF- 776 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ A Sbjct: 777 -------------GIVYGISDFGLAQ------------------------------NLNI 793 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +R +++ +K V +E+ +Q E G Sbjct: 794 PQKEAKRFIESYFEKFPGVKRYMDEI---VKQARERGYVTTLMN---------------- 834 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R D+ + R +Q + D++ M+ Sbjct: 835 -------RRRYLPDIHSRN---YQLRSFAERTAMNTP------IQGSAADLIKLAMVRID 878 Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESK 671 +A ++L VHDE++ E P + +L M + + +PLK + Sbjct: 879 RAMRDAQMDARMLLQVHDELIFECPKDELAALEVLVRDNMENAMT--LSVPLKVDTAYGP 936 Query: 672 RY 673 + Sbjct: 937 TW 938 >gi|110630020|gb|ABG80522.1| DNA polymerase I [Geobacillus anatolicus] gi|209360702|gb|ACI43003.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 86/675 (12%), Positives = 175/675 (25%), Gaps = 157/675 (23%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKA 82 D ++ A + + + L + S F+ V Sbjct: 330 HDAPIVGIALV--NEHGRFFLRAEMALADPQFVAWLADETKKK----SMFDAKRASVALK 383 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ L+ A V KM++ + + Sbjct: 384 WKGIELRGVA-FDLLLAAYLLNPAQDAGDVAAV-----AKMKQYEAVRPDEAVYGKGA-- 435 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------------EQELWYLD 189 R+ P+ I+ P + EQ L + Sbjct: 436 -KRSLPDEPTLAEHLVRKAA-------AIWALERPFLDELRSNEQDELLIKLEQPLATIL 487 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G VD + + + ++Q + L + ++L LF + L Sbjct: 488 AEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYELAGQ-EFNINSPKQLGIILFEKLQL 546 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T+ +T VL + + R + + L++ ++ D Sbjct: 547 PVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVHHDTGKVH 605 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 T+ ++TGR S QN+P + +R Sbjct: 606 TMFNQALTQTGRLSSAEPNLQNIPIRLEEGRK-------------------------IRQ 640 Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + G + AD + IE RVLA +A + ++AF D++ T F+V+ +VT Sbjct: 641 AFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVT 700 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 R K + G++ A Sbjct: 701 ATMRRQAKAVNF--------------GIVYGISDYGLAQ--------------------- 725 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + V + ++ + G Sbjct: 726 ---------NLNITRKEAAEFIERYFASFPGVKRYMETI---VQEAKQKGYVTTLLH--- 770 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 R + D+ + R +Q Sbjct: 771 --------------------RRRYFPDITSRNF---NVRSFAERTAMNTP------IQGS 801 Query: 606 SRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + DI+ + M++ + ++L VHDE++ E P + L +M Sbjct: 802 AADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAVE-- 859 Query: 659 KGLPLKAEGYESKRY 673 +PLK + + + Sbjct: 860 LRVPLKVDYHYGPTW 874 >gi|319651809|ref|ZP_08005934.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2] gi|317396461|gb|EFV77174.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2] Length = 877 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 87/662 (13%), Positives = 188/662 (28%), Gaps = 135/662 (20%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEALENTDVTIVAHNSYFERT---VLKA 82 +I F+ D V K E+ ++ V Sbjct: 331 ADIIGFSVANDKGNFF----FSKETALKSDVFKTWAEDETKKKTV----YDAKRSEVSLR 382 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 + + + + ++ + K + + A + KG Sbjct: 383 HHGVHLKGAD-FDLYIASYLINPSQTIEDMASIAK--NHGYNAIQSDEAFYGKGAKRRIP 439 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 ++ H K + + ++ E E L + + G VD+ Sbjct: 440 EEKELAGHLARKAAALMTLKEKLDSELKENQQSELFYDLEMPLSLILADMESTGIKVDLE 499 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 T+ Q + + ++++ + L + ++L LF + GL T+ +T Sbjct: 500 RLKTMGQDLLSKLDEIEKRIHELAG-EAFNINSPKQLGVILFEKLGLPAIKKTKTGYSTS 558 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + + R + + L++ +N + T ++TGR Sbjct: 559 ADVLEKLENSHEIIRDILHYRQ-LGKLQSTYIEGLLKVVNYETGKVHTRFNQALTQTGRL 617 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + G + Sbjct: 618 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEPGWAIFA 652 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ ++AF D++ T F+V +VT + R K + Sbjct: 653 ADYSQIELRVLAHIANDEKLIEAFIEDMDIHTKTAMEVFHVNANEVTSNMRRHAKAVNFG 712 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + + E + + + + + + Sbjct: 713 IVYGIS-----DYGLSQSLGITRKEAGKFIDRYLESYPGVKQYMDDIIHDAKQKGYVSTL 767 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 768 -----------------------------------------LHRRRYLPEITSRNFNLRS 786 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617 R+ +NT +Q + DI+ + M++ Sbjct: 787 F---------------AERTAMNT------------------PIQGSAADIIKKAMIDMA 813 Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 + ++L VHDE++ E P+ + + +M + +PLK + Sbjct: 814 DRLRKEELKARLLLQVHDELIFEVPEDEIETLKKIVPDVMENAVE--LKVPLKVDYSFGP 871 Query: 672 RY 673 + Sbjct: 872 TW 873 >gi|299535474|ref|ZP_07048796.1| DNA polymerase I [Lysinibacillus fusiformis ZC1] gi|298729235|gb|EFI69788.1| DNA polymerase I [Lysinibacillus fusiformis ZC1] Length = 875 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 88/647 (13%), Positives = 186/647 (28%), Gaps = 125/647 (19%) Query: 31 ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 + A D + + L+ LE+ +S + LK + + Sbjct: 332 LGIALS-DGIKTQYIPFDNAAK-SDTLRRWLEDATKIKYMSDSKAAQASLKRA-GIQLAG 388 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 L+ + N + + + + E + + KG H Sbjct: 389 VD-FDLLLASYINNPALSGDDIATLARELGYYDVQADEAV--YGKGAKRAIPDLDQLAQH 445 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 + + + ++ + + E L + + G V+ A + Q Sbjct: 446 VSRKAFAVWSLQPKLEALLKDNEQFDLYKNLELPLAGILGEMESEGITVNRATLEKMGQE 505 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267 ++ + ++QE+ + + ++L LF + GL + T+ +T VL + Sbjct: 506 LNDKLVVIEQEIYAEAG-ETFNINSPKQLGVILFDKLGLPVIKKTKTGYSTAADVLEKLQ 564 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + R + + L++ ++ T + TGR S Q Sbjct: 565 SEHAIIEHILLYRQ-LGKLQSTYIEGLLKEIHESNSKVHTRFQQALTATGRLSSTDPNLQ 623 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEA 386 N+P + +R + E L AD + IE Sbjct: 624 NIPIRLEEGRK-------------------------IRQAFVPSKEDWILFSADYSQIEL 658 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA M+ +Q ++AF G D++ T F+V+ +V + R K + + Sbjct: 659 RVLAHMSEDQNLVEAFREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKAVNFGIV------ 712 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ + + Sbjct: 713 --------YGISDYGLSQNLDI------------------------------TRKEAANF 734 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + + V + +++ + NG R Sbjct: 735 IEKYFASFPGVKQYMDDI---VQNAKFNGYVTTILN-----------------------R 768 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KA 620 D+ ++ R +Q + DI+ + M++ K Sbjct: 769 RRYLPDITSSNF---NLRSFAERTAMNTP------IQGSAADIIKKAMIDMDARLKKEKM 819 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 ++L VHDE++ E P + + +M + A +PLK + Sbjct: 820 QAKLLLQVHDELIFEAPKEEIALLEKIVPEVMENAIELA--VPLKVD 864 >gi|209360704|gb|ACI43004.1| DNA polymerase I [Geobacillus anatolicus] Length = 878 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 86/675 (12%), Positives = 175/675 (25%), Gaps = 157/675 (23%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKA 82 D ++ A + + + L + S F+ V Sbjct: 330 HDAPIVGIALV--NEHGRFFLRAEMALADPQFVAWLADETKKK----SMFDAKRASVALK 383 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ L+ A V KM++ + + Sbjct: 384 WKGIELRGVA-FDLLLAAYLLNPAQDAGDVAAV-----AKMKQYEAVRPDEAVYGKGA-- 435 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------------EQELWYLD 189 R+ P+ I+ P + EQ L + Sbjct: 436 -KRSLPDEPTLAEHLVRKAA-------AIWALERPFLDELRSNEQDELLIKLEQPLATIL 487 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G VD + + + ++Q + L + ++L LF + L Sbjct: 488 AEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYELAGQ-EFNINSPKQLGIILFEKLQL 546 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T+ +T VL + + R + + L++ ++ D Sbjct: 547 PVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVHHDTGKVH 605 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 T+ ++TGR S QN+P + +R Sbjct: 606 TMFNQALTQTGRLSSAEPNLQNIPIRLEEGRK-------------------------IRQ 640 Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + G + AD + IE RVLA +A + ++AF D++ T F+V+ +VT Sbjct: 641 AFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVT 700 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 R K + G++ A Sbjct: 701 ATMRRQAKAVNF--------------GIVYGISDYGLAQ--------------------- 725 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + V + ++ + G Sbjct: 726 ---------NLNITRKEAAEFIERYFASFPGVKRYMETI---VQEAKQKGYVTTLLH--- 770 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 R + D+ + R +Q Sbjct: 771 --------------------RRRYFPDITSRNF---NVRSFAERTAMNTP------IQGS 801 Query: 606 SRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + DI+ + M++ + ++L VHDE++ E P + L +M Sbjct: 802 AADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAVE-- 859 Query: 659 KGLPLKAEGYESKRY 673 +PLK + + + Sbjct: 860 LRVPLKVDYHYGPTW 874 >gi|209360700|gb|ACI43002.1| DNA polymerase I [Geobacillus bogazici] Length = 878 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 86/675 (12%), Positives = 173/675 (25%), Gaps = 157/675 (23%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKA 82 D ++ A + + + L + S F+ V Sbjct: 330 HDAPIVGIALV--NEHGRFFLRAEMALADPQFVAWLADETKKK----SMFDAKRASVALK 383 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ L+ A V KM++ + + Sbjct: 384 WKGIELRGVA-FDLLLAAYLLNPAQDAGDVAAV-----AKMKQYEAVRPDEAVYGKGA-- 435 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------------EQELWYLD 189 R+ P+ I+ P + EQ L + Sbjct: 436 -KRSLPDEPTLAEHLVRKAA-------AIWALERPFLDELRSNEQDELLIKLEQPLATIL 487 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G VD + + + ++Q + L + ++L LF + L Sbjct: 488 AEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYELAGQ-EFNINSPKQLGIILFEKLQL 546 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T+ +T VL + + R + + L++ ++ D Sbjct: 547 PVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVHHDTGKVH 605 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 T+ ++TGR S QN+P + +R Sbjct: 606 TMFNQALTQTGRLSSAEPNLQNIPIRLEEGRK-------------------------IRQ 640 Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + G + AD + IE RVLA +A + ++AF D++ T F+V+ +VT Sbjct: 641 AFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVT 700 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 R K + G++ A Sbjct: 701 ATMRRQAKAVNF--------------GIVYGISDYGLAQ--------------------- 725 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + V ++ + G Sbjct: 726 ---------NLNITRKEAAEFIERYFASFPGVKRYM---ENIVQEAKQKGYVTTLLH--- 770 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 R D+ + R +Q Sbjct: 771 --------------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGS 801 Query: 606 SRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + DI+ + M++ + ++L VHDE++ E P + L +M Sbjct: 802 AADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVE-- 859 Query: 659 KGLPLKAEGYESKRY 673 +PLK + + + Sbjct: 860 LRVPLKVDYHYGPTW 874 >gi|229916392|ref|YP_002885038.1| DNA polymerase I [Exiguobacterium sp. AT1b] gi|229467821|gb|ACQ69593.1| DNA polymerase I [Exiguobacterium sp. AT1b] Length = 864 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 90/655 (13%), Positives = 182/655 (27%), Gaps = 134/655 (20%) Query: 33 FAFGFDDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 D + +KE +E+ T + ++ LK + + Sbjct: 326 IGVAIASERGVTIGDVTLLED--ERVKEWIEDETKTTICLDAKQTIIQLKRHQ---LALR 380 Query: 92 RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + LV L +L ++ ++ E + KG + + Sbjct: 381 GYEDLLVAGYLLNLSGGTSLSSIAAHFTYPLEEDETV------YGKGAKIKVPEENVFHA 434 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 H V + ++ E + E+ L + + G V+V + Sbjct: 435 HLAEKAYAIYTLFERVVSELKENEQTELYEALEKPLVSVLAEMEWAGIHVNVETLQHMET 494 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266 + L+ + L + ++L LF + L T+ +T VL Sbjct: 495 DLRERLNALEITIHELAG-EPFNINSPKQLGVVLFEKLSLPPVKKTKTGYSTAADVLEKL 553 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 L P ++ + R + + L + + DG++ ++TGR S Sbjct: 554 APLHPIIEKIMHYR-ELGKLQSTYVEGLQKVVKDDGKIHTRYTQ-TLTQTGRLSSVNPNL 611 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIE 385 QN+P +R A G L D + IE Sbjct: 612 QNIPIRLEEGRR-------------------------IRKAFTASEPGWVLYAVDYSQIE 646 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R++A M+ ++ + AF ED++ +T A F V+ +VT R K + Sbjct: 647 LRIMAHMSQDEKMMAAFLHDEDIHTSTAANVFKVSAEEVTSLMRRQAKAVNF-------- 698 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ + + Sbjct: 699 ------GIIYGISDYGLSQ------------------------------NLGITRKEAQT 722 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + ++ V + + + + + Sbjct: 723 FIDTYFEQFPGVKTFMDAAIERARE--------------------------HGFVETMLK 756 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------K 619 R D+ + R +Q + DI+ + M++ K Sbjct: 757 RRRNIPDIHSRNF---NLRGFAERTAINTP------IQGTAADIIKKAMIDVDHALNASK 807 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P + L M + +PL+A+G + Sbjct: 808 LQSKLLLQVHDELIFEGPTEEMEALEKLVTEAMEQTVT--LDVPLRADGAVGTTW 860 >gi|224372423|ref|YP_002606795.1| DNA polymerase I [Nautilia profundicola AmH] gi|223590027|gb|ACM93763.1| DNA polymerase I [Nautilia profundicola AmH] Length = 872 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 105/700 (15%), Positives = 204/700 (29%), Gaps = 177/700 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV 56 + D ET S E+ ++ F+F ++ + H +P+ Sbjct: 320 KIVAFDTETDSL------------ENPNIVGFSFAYEKNKAYYVPINHFYLGVTDQIPEK 367 Query: 57 -----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSAL 109 +++ L D ++ HN F+ +LK L+IP T++LA P L Sbjct: 368 TALKAIQKIL---DKKVIGHNLKFDFKMLKKY-GLEIPT-PHADTMILAWILDPDSPVGL 422 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 +V + L + K + + +Y D ++ Sbjct: 423 DSVAKRY------------LDHQNIKFKEVIGKRKN---FSEVDIQEAAKYAAEDALISL 467 Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++++ L+ E L I +G +D+ L + L Q Sbjct: 468 KLYEILKEKLWEEVKWDIENIEMPFINLLIDIESQGIKLDIEYMQKLQTETTEKLENLTQ 527 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277 E+ + + ++L LF L ++ T+ +T ++VL+S K P ++ Sbjct: 528 EIYRYAGS-EFNIKSTKQLAHILFEVLKLPVKRKTKTGYSTDEKVLTSLKGTHPIIEKLL 586 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRPSRSH 336 R + + + L E D + FL + TGR S QN+P + Sbjct: 587 EYR-KLDKLLSTYIIPLQEYAKKDPNHKIYTNFLQTGTATGRLSSKNPNLQNIPTSTD-- 643 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R +A + + V D + IE R+LA + ++ Sbjct: 644 -------------------------INIRDAFVAEK--EFVSLDYSQIELRLLAHFSKDE 676 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF +D+++ T + F K+ R + K + G Sbjct: 677 HLINAFLEDKDIHLETAVKIFG---ENRAKEYRPVAKSINF--------------GLIYG 719 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + Sbjct: 720 MGP------------------------------KKLSETINVSTKEAKEFIEKYFASFPT 749 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V L + E G KRR Sbjct: 750 VKTF---LENTKIEAREKGYVETLLKRRRFFDF--------------------------- 779 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--GYDIVLTVHDEIVC 634 + + I Q + DI+ + M+ + ++L +HDE++ Sbjct: 780 ------AAANARTLANFEREAVNTIFQGSAADIIKKAMIEIKQRFPKAKMLLQIHDELIF 833 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E A +M + +PLK KR+ Sbjct: 834 EI--DSRDEAYEYKKIMQNVFK--LEVPLKVGISFGKRWG 869 >gi|319892738|ref|YP_004149613.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03] gi|317162434|gb|ADV05977.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03] Length = 875 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 98/661 (14%), Positives = 205/661 (31%), Gaps = 127/661 (19%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 Y +D ++ F +D + P+ L LE+ H++ +K Sbjct: 327 YLKD-ELLKFGL-YDGEQYVVIPFDKVNEYPE-LVAWLEDETTQKWVHDAKKTYIAMKR- 382 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 ++ I + T++ + ++ V + Q + + ++ + KG++ Sbjct: 383 SDIAIE-NVVFDTMLASYIIDPSRTIEDVHSVMTHFDQTFVQ--DDVSVYGKGKSFHIPE 439 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 D H + + + E ++ LS E L + + G D+ Sbjct: 440 DGVLDKHIASILDAIHVVQPQMMTILEAHEQTSLLSEIELPLALILSEMEYIGIHTDIDT 499 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260 + ++ E +L +++ + ++L LF + L + T+ +T Sbjct: 500 LKEMETVIQTELDQLIEQIHEQAG-EKFNINSPKQLGVILFEKLELPVIKKTKTGYSTAV 558 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL + P + R S+ + L + + DGR+ A +TGR S Sbjct: 559 DVLEKLQNAHPIIDNILTYR-TLSKLQSTYVEGLQKVIWDDGRIHTRFNQTLA-QTGRLS 616 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVA 379 QN+P + +R ++ E ++ A Sbjct: 617 SVDPNLQNIPIRLEEGRK-------------------------IRKAFKSTHEDYVILAA 651 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA + G+ +AF ED++ TT + FNVA +VT R K + + Sbjct: 652 DYSQIELRVLAHITGDPTLQQAFNDNEDVHTTTAMKVFNVAADEVTSLMRRQAKAVNFGI 711 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y + L + + + +++ + ++ + + Sbjct: 712 VYGIS-----DYGLSQSLGITRKEAQRFIDDYLNHFPGVKDYMDNIVQDAKQQGYVETL- 765 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 ++RR +P + + Sbjct: 766 ----------------------------------------LKRRRYIPDITSRNFNLRGF 785 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 R+ +N+ +Q + DI+ M+ + Sbjct: 786 ---------------AERTAMNSP------------------IQGSAADIIKLAMVQFHR 812 Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKR 672 ++L VHDE++ E P + + +M +PL E K Sbjct: 813 EVQKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVEEIMAHALQ--LDVPLSVESDYGKT 870 Query: 673 Y 673 + Sbjct: 871 W 871 >gi|229032231|ref|ZP_04188204.1| DNA polymerase I [Bacillus cereus AH1271] gi|228729011|gb|EEL80014.1| DNA polymerase I [Bacillus cereus AH1271] Length = 891 Score = 325 bits (833), Expect = 2e-86, Method: Composition-based stats. Identities = 94/660 (14%), Positives = 185/660 (28%), Gaps = 127/660 (19%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + + ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGAMRKHTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K K ++ K + KG Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V + ++ E + E L + + +G VD Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 575 VLEKLMDRHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ + AF+ D++ T F V +VT + R K + Sbjct: 669 YSQIELRVLAHIANDKGLVDAFQRDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNF--- 725 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 G++ + Sbjct: 726 -----------GIVYGISDYGLSQ------------------------------NLGITR 744 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 A + + + V E +++ + + G K Sbjct: 745 KAAAEFIEKYLESFPGVQEYMDDI---VKDAKQKGYVATLLK------------------ 783 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----N 616 R ++ + R +Q + DI+ + M+ Sbjct: 784 -----RRRYIPEITSRNF---NLRSFAERTAMNTP------IQGTAADIIKKAMIIMADR 829 Query: 617 ATKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 830 LEEEGLQARLLLQVHDELIFEAPQEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|209360698|gb|ACI43001.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 325 bits (833), Expect = 2e-86, Method: Composition-based stats. Identities = 88/675 (13%), Positives = 174/675 (25%), Gaps = 157/675 (23%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKA 82 D ++ A + + + L + S F+ V Sbjct: 330 HDAPIVGIALV--NEHGRFFLRAEMALADPQFVAWLADETKKK----SMFDAKRASVALK 383 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ L+ A V KM++ + + Sbjct: 384 WKGIELRGVA-FDLLLAAYLLNPAQDAGDVAAV-----AKMKQYEAVRPDEAVYGKGA-- 435 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------------EQELWYLD 189 R+ P+ I+ P + EQ L + Sbjct: 436 -KRSLPDEPTLAEHLVRKAA-------AIWALERPFLDELRSNEQDELLIKLEQPLATIL 487 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G VD + + + ++Q + L + ++L LF + L Sbjct: 488 AEMEFTGVKVDTKRLEQMGSELAEQLGAIEQRIYELAGQ-EFNINSPKQLGIILFEKLQL 546 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T+ +T VL + + R + + L++ ++ D Sbjct: 547 PVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVHHDTGKVH 605 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 T+ ++TGR S QN+P + +R Sbjct: 606 TMFNQALTQTGRLSSAEPNLQNIPIRLEEGRK-------------------------IRQ 640 Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + G + AD + IE RVLA +A + ++AF D++ T F+V+ +VT Sbjct: 641 AFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHAKTAMDIFHVSEEEVT 700 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 R K + G++ A Sbjct: 701 ATMRRQAKAVNF--------------GIVYGISDYGLAQ--------------------- 725 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + V + Q +Q G Sbjct: 726 ---------NLNITRKEAAEFIERYFASFPGVKRYMETIVQEAKQ---KGYVTTLLH--- 770 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 R D+ + R +Q Sbjct: 771 --------------------RRRYLPDITSRNF---NVRSFAERTAMNTP------IQGS 801 Query: 606 SRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + DI+ + M++ + ++L VHDE++ E P + L +M Sbjct: 802 AADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAVE-- 859 Query: 659 KGLPLKAEGYESKRY 673 +PLK + + + Sbjct: 860 LRVPLKVDYHYGPTW 874 >gi|237716864|ref|ZP_04547345.1| DNA polymerase I [Bacteroides sp. D1] gi|229442847|gb|EEO48638.1| DNA polymerase I [Bacteroides sp. D1] Length = 504 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 83/621 (13%), Positives = 174/621 (28%), Gaps = 145/621 (23%) Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFC 134 VL+ + T++ + + E + ELI Sbjct: 1 MIVLQNYGAVV--KGPLFDTMIAHYVLQPELRHGMDYLAEIYLH--YQTIHIDELIG--- 53 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQE 184 K + Y D +T ++ LE E Sbjct: 54 ------PKGKNQKNMRDLDPKDVYLYACEDADITLKLKNVLEKELKENDAERLFYDIEMP 107 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + I G +D + + ++++E+ L + +++ LF Sbjct: 108 LVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKEIYELAG-ETFNIASPKQVGEVLF 166 Query: 245 LETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 + + T+T T + VL S + P ++ +R + ++ L +N Sbjct: 167 DKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR-GLKKLLGTYIDALPLLIN 225 Query: 300 SD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 GR+ + + TGR S QN+P + +E Sbjct: 226 PRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE-------------------- 264 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R I EG AD + IE R++A ++ ++ + AF + D++ T A+ + Sbjct: 265 -----IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKIYK 319 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 + V D R K G+++ A + + Sbjct: 320 IDLKDVDSDMRRKAKTANF--------------GIIYGISVFGLAERMNVD--------- 356 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 + + + + + V ++ Q ++ Sbjct: 357 ---------------------RKEAKELIDGYFETYPGVKAYMDKSIQVAQE-------- 387 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 + R D+ + + + R Sbjct: 388 ------------------KGYVETIFHRKRFLPDINSRNAVVRGY---AERNAINAP--- 423 Query: 599 ENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHLMT 652 +Q + DI+ M + ++L VHDE+ P ++ + Sbjct: 424 ---IQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVNEKERVEEIVIE-E 479 Query: 653 SNPSWAKGLPLKAEGYESKRY 673 ++ +PLKA+ K + Sbjct: 480 MEKAYRMHVPLKADCGWGKNW 500 >gi|115424492|dbj|BAF33374.1| DNA polymerase I [Bacillus smithii] Length = 876 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 87/659 (13%), Positives = 186/659 (28%), Gaps = 131/659 (19%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 ++ A + + P V K+ E+ ++ L+ +++ Sbjct: 331 DIVGMAVQNEKG-IFYLPTESTLKSP-VFKKWAEDETKKKTVFDAKRTVIALRRH-GIEL 387 Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 L+ + + K+ E+ + L ++ Sbjct: 388 KGIE-FDLLLASYLINPSESPSDFA-----DVAKLHGFNEVQSDEAVYGKGAKLKLPDRE 441 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP---LSSKEQELWYLDQTINDRGYCVDVALAH 205 + E R++ K + E L + + G VDV Sbjct: 442 IYEEHIARKAVGLTKLAETCRDVLKENDQLSLFYDLEMPLALILADMEWTGVKVDVDRLT 501 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262 + + ++++E+ L + ++L LF + GL + T+ +T V Sbjct: 502 EMGDELHNRLQEIEKEIYELAGQ-EFNINSPKQLGHILFEKMGLPVIKKTKTGYSTSADV 560 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L + + R + ++ L++ ++ + T ++TGR S Sbjct: 561 LEKLESSHEIVRYILEYRQ-LGKLQSTYIDGLLKVVHQNTHKVHTRFNQALTQTGRLSSA 619 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADL 381 QN+P + +R + SE + AD Sbjct: 620 DPNLQNIPIRLEEGRK-------------------------IRQAFVPSEKDWVIFSADY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE RVLA ++G+Q ++AF D++ T F+V +VT + R K + + Y Sbjct: 655 SQIELRVLAHISGDQKLIEAFREDMDIHTKTAMDVFHVQKEEVTSNMRRQAKAVNFGIVY 714 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 + L + + D + + + Sbjct: 715 GIS-----DYGLSQNLGITRKEAGQFIERYFASYPDVKEYMDEIVREAKRKGYVTTL--- 766 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 +RR +P + + Sbjct: 767 --------------------------------------LHRRRYLPEITSRNFNVRSF-- 786 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620 R+ +NT +Q + DI+ + M++ + Sbjct: 787 -------------AERTAMNTP------------------IQGSAADIIKKAMIDMAERL 815 Query: 621 -----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P + + +M +PLK + + Sbjct: 816 KKEQLKSRMLLQVHDELIFEVPPDEIETMKKIVPDVMEHAVE--LKVPLKVDYAYGPTW 872 >gi|94264033|ref|ZP_01287833.1| DNA polymerase A [delta proteobacterium MLMS-1] gi|93455544|gb|EAT05731.1| DNA polymerase A [delta proteobacterium MLMS-1] Length = 910 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 102/709 (14%), Positives = 187/709 (26%), Gaps = 174/709 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFG--------------FDDHPVELWDCVH 49 L ID ET S L ++ + H Sbjct: 316 LVIDTETTSLNALR----------AELVGISLCPLPAAATAADNSQPTPPPTAWYLPIGH 365 Query: 50 D-------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 + Q L L + + + HN ++ VLK+ L++ + Sbjct: 366 RLADGSPAPGQLPLAAVQQQLAPLLGDPQLLKLGHNLKYDLQVLKSH-GLELA-APLADS 423 Query: 97 LVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 ++ + L + L L + R + Sbjct: 424 MIASYLIDPGRRSHKLDDLSSEL------------LERQLTSFAEVSAGDRRPEAFAYVE 471 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVAL 203 Y DV +R +++ P + E L + + G VD A+ Sbjct: 472 PAAACRYSCQDVVASRLLWELFAPQLQQLGLDSLLHEVEMALLPILARMERLGILVDPAV 531 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TT 258 L + E +L+ ++ L + +L L+ L T+ +T Sbjct: 532 LDELEREFGRELARLESKIAELAG-ESFNINSPRQLGEVLYERLKLPHGRKTKGKTGYST 590 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTG 317 R L V ++R S+ ++ L ++ DGR+ T + TG Sbjct: 591 DYRELERLAAYHDLPAAVISHRN-LSKLKSTYVDKLATLIDPADGRVHTTFNQ-TVTATG 648 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P + L R+ +A+ G + Sbjct: 649 RLSSSNPNLQNIPIRTPEGRRL-------------------------RAAFVAAAGHLFL 683 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + I+ RVLA +G+ +AF +D++ T A F V V+ D R + K + Sbjct: 684 AADYSQIDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINF 743 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y A L + + E ++ F + + E Sbjct: 744 GIVYGMSA-----FGLAEQLRCSRKEAQTFIDRYFELYQGVLRFMQEIVEQARRDGWVGT 798 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + +S + T G A K + Sbjct: 799 LLNRRRPLP-----EINSGNKMRREFAERTAINTPIQGTAADIIKLAAIACD-------- 845 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R+L + ++ Sbjct: 846 --------RALREAGCRSE------------------------------------ALLQI 861 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKA 665 DE++ E P + ++ M A +PL Sbjct: 862 H-----------DELIFEVPQDELAQVGPLIRQAMEEVMELA--VPLTV 897 >gi|257869278|ref|ZP_05648931.1| DNA polymerase A [Enterococcus gallinarum EG2] gi|257803442|gb|EEV32264.1| DNA polymerase A [Enterococcus gallinarum EG2] Length = 881 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 95/678 (14%), Positives = 195/678 (28%), Gaps = 144/678 (21%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVAH 71 + G + ED ++ + + D + LK A + V Sbjct: 324 IEMLGDNYHLED--IVGV--AWGNQQKIYVTNQDDLFENEYFIAWLKNA---SSQKKV-- 374 Query: 72 NSYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 ++ L P TL+ A + + K + Sbjct: 375 ---YDAKRTYVALNRYA--AAPQGIVFDTLLAAYLLDTNDSNNDIAGVAKHYGFYAIQSD 429 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187 E I + + H Y + + + E L Sbjct: 430 EAI-YGKGVKRGLPADEEVFFAHLARKVAAINYLSVRLAKELAEKNQTALFTDMELPLSK 488 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + G VD + H + +++Q++ + ++L LF + Sbjct: 489 ILAEMEITGIRVDASRLHQMKGEFAERLHEIEQKIYQEAG-EEFNLNSPKQLGVILFEKM 547 Query: 248 GLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 GL + T+ +T VL K+ P + R ++ + L++ + DG++ Sbjct: 548 GLPVIKKTKTGYSTAVDVLEQLKEQAPIVEDILIYRQ-IAKIQSTYVEGLLKVIQGDGKV 606 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 ++TGR S QN+P + + Sbjct: 607 HTRYVQ-TLTQTGRLSSVDPNLQNIPIRLEEGRK-------------------------I 640 Query: 365 RSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422 R + + + +D + IE RVLA ++ ++ AF G+D++ +T R F ++ P Sbjct: 641 REAFVPRAKDWVIYSSDYSQIELRVLAHISNDEHLKAAFVEGQDIHSSTAMRVFGISTPE 700 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT + R K + G++ + Sbjct: 701 EVTPNMRRQAKAVNF--------------GIVYGISDYGLSQ------------------ 728 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 A ++ + +K+ V E+ + + Sbjct: 729 ------------NLGITRKAAQQYIDTYFEKYPGVKTYMEEVVREAKD------------ 764 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 + R D+ + L T R + Sbjct: 765 --------------KGYVETLYHRRRYLPDINSRNFNLRTF---AERTAINTP------I 801 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNP 655 Q + DIL M++ + ++L VHDE+V E P+ + +++ +M + Sbjct: 802 QGSAADILKIAMIDLDRRLKEEKLQATMLLQVHDELVFEVPEDELERLDALVKEVMENAV 861 Query: 656 SWAKGLPLKAEGYESKRY 673 S +PL + K + Sbjct: 862 S--LHVPLLTDSNWGKTW 877 >gi|313608606|gb|EFR84470.1| DNA polymerase I [Listeria monocytogenes FSL F2-208] Length = 531 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 80/640 (12%), Positives = 179/640 (27%), Gaps = 144/640 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKA-- 111 + +E +E+ T V +++ + + + I ++ + ++ Sbjct: 11 EAFREWVESEQ-TKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFT 66 Query: 112 -VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 V + + +E + R+ P + + Sbjct: 67 SVAVRHDYTEVETDE-----------AVYGKGAKRSTPEESIVASHLARKAVAIADLEKR 115 Query: 171 IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + LE + E L ++ + +G VD + + L++ + S Sbjct: 116 LVADLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHS 175 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 L + ++L LF + GL T+ +T VL S ++ R Sbjct: 176 LAG-EEFNINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQ 234 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ + + T ++TGR S QN+P + Sbjct: 235 -LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRK--- 290 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R + G K+ AD + +E RVLA ++ ++ + Sbjct: 291 ----------------------IRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIY 328 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ D++ T F+V +V R K + G++ Sbjct: 329 AFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN--------------FGIVYGISDY 374 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + V E Sbjct: 375 GLSQ------------------------------NLGITRKEAKDFIDRYFVSYPAVKEY 404 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 ++ + ++ + I R ++ + Sbjct: 405 MQDIVRFAKE--KGYVETILH------------------------RRRYIPEIVSRNF-- 436 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 R +Q + DI+ + M+ K ++L VHDE++ Sbjct: 437 -NVRGFAERTAMNTP------IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIF 489 Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 E P+ + + +M + +PLK + + Sbjct: 490 EAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 527 >gi|71897679|ref|ZP_00679924.1| DNA polymerase A [Xylella fastidiosa Ann-1] gi|71732582|gb|EAO34635.1| DNA polymerase A [Xylella fastidiosa Ann-1] Length = 923 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 96/700 (13%), Positives = 186/700 (26%), Gaps = 157/700 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL------ 57 +D ET S + +I +F + HD P L Sbjct: 346 ALDTETDSLDPM----------QAVLIGLSFASEVGCAAYLPFGHDYPGAPVQLDRGQAL 395 Query: 58 ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111 + LE+ V V + ++ VL+ + + + TL+ + A + Sbjct: 396 ALLQPLLEDPAVRKVGQHGKYDMHVLRRY-GIVLAGYA-DDTLLESFVLTSGHARHDMDT 453 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + G E + + P + +Y D +T + Sbjct: 454 LARRH--------LGYETMKYV----DLVGKGAKQIPFSHVGVQEATQYAAEDADITLRL 501 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + + I G +D + + + Q Sbjct: 502 HCVLAPKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQ 561 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF E L +T + L + + Sbjct: 562 KAMDLAGRH-FNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHALPRVI 620 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ L E ++ GR+ GA+ TGR S QN+P + Sbjct: 621 LEYR-SLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAA-TGRLSSSDPNLQNIPIRTDD 678 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G+KL+ D + IE R++A ++G+ Sbjct: 679 GRR-------------------------IRRAFVAPSGRKLIACDYSQIELRIMAHLSGD 713 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+G D++ A F +VT ++R K + L Y A Sbjct: 714 AGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSA-----FGLAR 768 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L ++ + + +F ++ + + G + + + Sbjct: 769 QLGISRGEAQDYIALYFDRFAGVRDFMENTRQQARDRGYVETVFGR------RLYLNSIA 822 Query: 516 RVSELWN-ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 ++ +A G A KR V + Sbjct: 823 SGNQTQRAGAERAAINAPMQGTAADIIKRAMVAVDGWLGVGG------------------ 864 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 R ++ E+V Sbjct: 865 -----------HRERA---------------------LMILQVHD-----------ELVF 881 Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + + M + +PL + + Sbjct: 882 EADEGFVPTLVHEVSARMAAAAQ--LRVPLVVDVGVGHHW 919 >gi|16803605|ref|NP_465090.1| DNA polymerase I [Listeria monocytogenes EGD-e] gi|47096730|ref|ZP_00234315.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854] gi|224499777|ref|ZP_03668126.1| DNA polymerase I [Listeria monocytogenes Finland 1988] gi|224501495|ref|ZP_03669802.1| DNA polymerase I [Listeria monocytogenes FSL R2-561] gi|254828200|ref|ZP_05232887.1| DNA polymerase I [Listeria monocytogenes FSL N3-165] gi|254898268|ref|ZP_05258192.1| DNA polymerase I [Listeria monocytogenes J0161] gi|254912239|ref|ZP_05262251.1| DNA polymerase I [Listeria monocytogenes J2818] gi|254936566|ref|ZP_05268263.1| DNA polymerase I [Listeria monocytogenes F6900] gi|284801956|ref|YP_003413821.1| DNA polymerase I [Listeria monocytogenes 08-5578] gi|284995098|ref|YP_003416866.1| DNA polymerase I [Listeria monocytogenes 08-5923] gi|16410994|emb|CAC99643.1| DNA polymerase I [Listeria monocytogenes EGD-e] gi|47014914|gb|EAL05862.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854] gi|258600588|gb|EEW13913.1| DNA polymerase I [Listeria monocytogenes FSL N3-165] gi|258609161|gb|EEW21769.1| DNA polymerase I [Listeria monocytogenes F6900] gi|284057518|gb|ADB68459.1| DNA polymerase I [Listeria monocytogenes 08-5578] gi|284060565|gb|ADB71504.1| DNA polymerase I [Listeria monocytogenes 08-5923] gi|293590215|gb|EFF98549.1| DNA polymerase I [Listeria monocytogenes J2818] Length = 875 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 78/662 (11%), Positives = 178/662 (26%), Gaps = 144/662 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 + + ++ +E+ T V +++ + + + I Sbjct: 333 IGLTVHSSQGTYFFTKETAESSEAFRKWVESDQ-TKVVYDAKKTIVAMNR---IGLAISG 388 Query: 93 W-ICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 ++ + ++ V + + +E + R+ P Sbjct: 389 ITFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDE-----------AVYGKGAKRSTP 437 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202 + + + LE + E L ++ + +G VD Sbjct: 438 EESIVAAHLARKAVAIADLEKRLVDDLEKNEQLALMEDLELPLTFVLAEMEMQGVSVDTD 497 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + L+ + SL + ++L LF + L T+ +T Sbjct: 498 RLEDMKVELGGRLKTLEASIHSLAG-EEFNINSPKQLGVILFEKLELPPVKKTKTGYSTA 556 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL S ++ R + + L++ + + T ++TGR Sbjct: 557 ADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRL 615 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + G K+ Sbjct: 616 SSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKMFS 650 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + +E RVLA ++ ++ + AF+ D++ T F+V +V R K + Sbjct: 651 ADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVN-- 708 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ + Sbjct: 709 ------------FGIVYGISDYGLSQ------------------------------NLGI 726 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + + + V E ++ + ++ + I Sbjct: 727 TRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH----------------- 767 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617 R ++ + R +Q + DI+ + M+ Sbjct: 768 -------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMS 811 Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 K ++L VHDE++ E P+ + + +M + +PLK + Sbjct: 812 ERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGD 869 Query: 672 RY 673 + Sbjct: 870 TW 871 >gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearothermophilus] Length = 877 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 82/664 (12%), Positives = 173/664 (26%), Gaps = 136/664 (20%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKA 82 D ++ A + + + L + S F+ V Sbjct: 330 HDAPIVGIALV--NEHGRFFMRPETALADSQFLAWLADETKKK----SMFDAKRAVVALK 383 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +D+ L+ A + K+ + E + + KG Sbjct: 384 WKGIDVRGVA-FDLLLAAYLLNPAQDAGDIAAVAKMKQYEAVRSDEAV--YGKGVKRSLP 440 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200 ++ H + ++ + + E + + G VD Sbjct: 441 DEQTLAEHLVRKAAAIWALEQ--PFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVD 498 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + + + ++Q + + ++L LF + L + T+ + Sbjct: 499 TKRLEQMGSELAEQLRAIEQRIYEHAGQ-EFNINSPKQLGVILFEKLQLPVLKKTKTGYS 557 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL + + R + + L++ + D T+ ++TG Sbjct: 558 TSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTGKVHTMFNQTLTQTG 616 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKL 376 R S QN+P + +R + + Sbjct: 617 RLSSAEPNLQNIPIRLEEGRK-------------------------IRQAFVPSEPDWLI 651 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 AD + IE RVLA +A + ++AF+ D++ T F+V+ +VT + R K + Sbjct: 652 FAADYSQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVN 711 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ A Sbjct: 712 F--------------GIVYGISDYGLAQ------------------------------NL 727 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + V ++ + G Sbjct: 728 NITRKEAAEFIERYFASFPGVRRYM---ENIVQEAKQKGYVTTLLH-------------- 770 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R D+ + R +Q + DI+ + M++ Sbjct: 771 ---------RRRYLPDITSRNF---NVRSFAERTAMNTP------IQGSAADIIKKAMID 812 Query: 617 A------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 + ++L VHDE++ E P + L +M S +PLK + + Sbjct: 813 LAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQAVS---SVPLKVDYHY 869 Query: 670 SKRY 673 + Sbjct: 870 GPTW 873 >gi|74318471|ref|YP_316211.1| DNA polymerase I [Thiobacillus denitrificans ATCC 25259] gi|74057966|gb|AAZ98406.1| DNA polymerase A [Thiobacillus denitrificans ATCC 25259] Length = 907 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 107/698 (15%), Positives = 188/698 (26%), Gaps = 156/698 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54 +D E S L +I AF + H Sbjct: 333 ALDVEASSASPLQC----------ELIGLAFAVCEGEAAYLPLGHHYAGAPAQLSRAAAF 382 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112 +K LE IV N + R VL C + + TL+ + P L ++ Sbjct: 383 ARIKPLLEERAAKIVGQNLKYARHVLANC-GIAL-GGAADDTLLQSYVLEAHQPHELASL 440 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 L + + A GEY VT + Sbjct: 441 ANRH------------LGLATLACDELTGKGAARIGFDQVAVERAGEYAAEQADVTLRVR 488 Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 +L E + + + G +D AL + + + +L+Q Sbjct: 489 GQLAARIAASEKLEYVYREIELPVSEVLFRMERAGVLLDRALLAAQSGELGRKMLELEQR 548 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + +++ LF + GL + T +T + L P A + Sbjct: 549 AFQEAGQP-FNLGSPKQIGDILFAQKGLPILKKTPGGAPSTDEETLELLALDHPIARAIL 607 Query: 278 NNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + R ++ + L + ++ GRL + A TGR + QN+P + Sbjct: 608 DYR-GLAKLKSTYTDKLPQMVHPLTGRLHTSYSQATA-VTGRLASVEPNLQNIPARTAEG 665 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +R IA G LV AD + IE R++A ++ + Sbjct: 666 RR-------------------------IREAFIAPPGHLLVSADYSQIELRIMAHLSDDA 700 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF D++ T A F V V+ +QR I KV+ L Y A + Sbjct: 701 GLLHAFANDLDIHTATAAEVFGVPLDAVSAEQRRIAKVINFGLIYGMSA-----FGLASQ 755 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 LNL A + + N+ +E+ + G ++ Sbjct: 756 LNLERSAAQAWIDRYFTRYPGVANYMLRTRESARAQGYVETVFGR--RLYLPEINARNP- 812 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + +A G A K + + + + Sbjct: 813 --QRRQGAERAAINAPMQGTAADLIKLAMIAVQRW---------------------IDSE 849 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 R ++ ++L E Sbjct: 850 RLGTRL-------------------------------LLQVHDE---LIL--------EV 867 Query: 637 PDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + + L M A +PL+ + Sbjct: 868 PEHELERVRAELPSHMCDVA--ALKVPLRVGVGVGGNW 903 >gi|254831966|ref|ZP_05236621.1| DNA polymerase I [Listeria monocytogenes 10403S] Length = 875 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 78/662 (11%), Positives = 178/662 (26%), Gaps = 144/662 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 + + ++ +E+ T V +++ + + + I Sbjct: 333 IGLTVHSSQGTYFFTKETAESSEAFRKWVESDQ-TKVVYDAKKTIVAMNR---IGLAISG 388 Query: 93 W-ICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 ++ + ++ V + + +E + R+ P Sbjct: 389 ITFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDE-----------AVYGKGAKRSTP 437 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202 + + + LE + E L ++ + +G VD Sbjct: 438 EESIVAAHLARKAVAIADLEKRLVDDLEKNEQLALMEDLELPLTFVLAEMEMQGVSVDTD 497 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + L+ + SL + ++L LF + L T+ +T Sbjct: 498 RLEDMKVELGGRLKTLEASIHSLAG-EEFNINSPKQLGVILFEKLELPPVKKTKTGYSTA 556 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL S ++ R + + L++ + + T ++TGR Sbjct: 557 ADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRL 615 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + G K+ Sbjct: 616 SSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKMFS 650 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + +E RVLA ++ ++ + AF+ D++ T F+V +V R K + Sbjct: 651 ADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVN-- 708 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ + Sbjct: 709 ------------FGIVYGISDYGLSQ------------------------------NLGI 726 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + + + V E ++ + ++ + I Sbjct: 727 TRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH----------------- 767 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617 R ++ + R +Q + DI+ + M+ Sbjct: 768 -------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMS 811 Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 K ++L VHDE++ E P+ + + +M + +PLK + Sbjct: 812 ERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGD 869 Query: 672 RY 673 + Sbjct: 870 TW 871 >gi|323464230|gb|ADX76383.1| DNA polymerase I [Staphylococcus pseudintermedius ED99] Length = 875 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 98/661 (14%), Positives = 205/661 (31%), Gaps = 127/661 (19%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 Y +D ++ F +D + P+ L LE+ H++ +K Sbjct: 327 YLKD-ELLKFGL-YDGEQYVVIPFDKVNEYPE-LVAWLEDETTQKWVHDAKKTYIAMKR- 382 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 ++ I + T++ + ++ V + Q + + ++ + KG++ Sbjct: 383 SDIAIE-NVVFDTMLASYIIDPSRTIEDVQSVMTHFDQTFVQ--DDVSVYGKGKSFHIPE 439 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 D H + + + E ++ LS E L + + G D+ Sbjct: 440 DDILDKHIASILDAIHVVQPQMMTILEAHEQTSLLSEIELPLALILSEMEYIGIHTDIDT 499 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260 + ++ E +L +++ + ++L LF + L + T+ +T Sbjct: 500 LKEMETVIQTELDQLIEQIHEQAG-EKFNINSPKQLGVILFEKLELPVIKKTKTGYSTAV 558 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL + P + R S+ + L + + DGR+ A +TGR S Sbjct: 559 DVLEKLQNAHPIIDNILTYR-TLSKLQSTYVEGLQKVIWDDGRIHTRFNQTLA-QTGRLS 616 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVA 379 QN+P + +R ++ E ++ A Sbjct: 617 SVDPNLQNIPIRLEEGRK-------------------------IRKAFKSTHEDYVILAA 651 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA + G+ +AF ED++ TT + FNVA +VT R K + + Sbjct: 652 DYSQIELRVLAHITGDPTLQQAFNDNEDVHTTTAMKVFNVAAGEVTSLMRRQAKAVNFGI 711 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y + L + + + +++ + ++ + + Sbjct: 712 VYGIS-----DYGLSQSLGITRKEAQRFIDDYLNHFPGVKDYMDNIVQDAKQQGYVETL- 765 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 ++RR +P + + Sbjct: 766 ----------------------------------------LKRRRYIPDITSRNFNLRGF 785 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 R+ +N+ +Q + DI+ M+ + Sbjct: 786 ---------------AERTAMNSP------------------IQGSAADIIKLAMVQFHR 812 Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKR 672 ++L VHDE++ E P + + +M +PL E K Sbjct: 813 EVQKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVEEIMAHALQ--LDVPLSVESDYGKT 870 Query: 673 Y 673 + Sbjct: 871 W 871 >gi|311069405|ref|YP_003974328.1| DNA polymerase I [Bacillus atrophaeus 1942] gi|310869922|gb|ADP33397.1| DNA polymerase I [Bacillus atrophaeus 1942] Length = 880 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 86/662 (12%), Positives = 184/662 (27%), Gaps = 131/662 (19%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEALENTDVTIVAHNSYFERTVLK-A 82 + ++ F+ + + ++ K+ E+ +S R+V+ Sbjct: 332 HEAPILGFSLVNETGH-YYIP---KEIAVQSEIFKKWAEDESQKKWVFDSK--RSVVALR 385 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ L+ A + V K + A + KG Sbjct: 386 WQGIELKGAE-FDALLAAYIINPANTYDDVASVAK--DYGLHIVSSDEAVYGKGAKRAVP 442 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 + H + + + E +LE E L + + G VDV Sbjct: 443 GENELAMHLVRKAAAVDSLREKLLQELENNDQLELYEELELPLALILGEMESIGVKVDVG 502 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + + ++++ + + ++L LF + GL + T+ +T Sbjct: 503 RLERMGEELGARLKEYEEKIHEIAG-EPFNINSPKQLGVILFEKLGLPVVKKTKTGYSTS 561 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + R + + L++ + D T ++TGR Sbjct: 562 ADVLEKLADQHDIVSYILQYRQ-IGKLQSTYIEGLLKVIRKDSHKVHTRFNQALTQTGRL 620 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVV 378 S QN+P + +R + SE + Sbjct: 621 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEKDWLIFA 655 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA ++ ++ ++AF D++ T F+VA +VT R K + Sbjct: 656 ADYSQIELRVLAHISKDENLIEAFTNDMDVHTKTAMDVFHVAQDEVTPAMRRQAKAVN-- 713 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ + Sbjct: 714 ------------FGIVYGISDYGLSQ------------------------------NLGI 731 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + + + V ++ ++ + G + Sbjct: 732 TRKEAAAFIERYLESFKGVKVYM---EESVQEAKQKGYVTTLMQ---------------- 772 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R ++ + R +Q + DI+ + M++ Sbjct: 773 -------RRRYIPELTSRNF---NLRSFAERTAMNTP------IQGSAADIIKKAMIDMA 816 Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 ++L VHDE++ E P + L +M +PLK + Sbjct: 817 AKLKEKQLKAKLLLQVHDELIFEAPKEEIKLLEKLVPEVMEHA--LNLDVPLKVDFASGP 874 Query: 672 RY 673 + Sbjct: 875 SW 876 >gi|297617859|ref|YP_003703018.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680] gi|297145696|gb|ADI02453.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680] Length = 871 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 97/653 (14%), Positives = 185/653 (28%), Gaps = 147/653 (22%) Query: 38 DDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-C 95 + V +++ DP + L+ LEN ++ + HN F VLK + Sbjct: 344 NGEDVYVFEMEQDPRAALEKLRAFLENEEIGKLVHNGKFIEVVLKRY---GLKFDGVRGD 400 Query: 96 TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 TL+L+ + + + E L L + K H+ Sbjct: 401 TLLLSYVLDPGFSGETLSEHL---------FHYLGEVVDEKMDPGLAVRGLKKLHQVLEE 451 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 G D+ ++ E L + + G VD + ++Q + + Sbjct: 452 KLGS---QDLVNLYKV---------VELPLSPVLADMEFTGIKVDPRILAEISQELALRI 499 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272 + + + + +L LF + GL T+ +T VL Sbjct: 500 AEDQARIYQVAGQ-EFNINSTRQLGKVLFEDLGLPPVKKTKTGYSTSAEVLEELYGSHEI 558 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + R ++ ++T ++ + T+ + TGR S QN+P Sbjct: 559 IEHIVEYR-TLAKLKSTYVDTFPGYIHPETGRVHTVFKQAVTATGRLSSVEPNLQNIPIR 617 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAW 391 +R + E L+ D + I+ R LA Sbjct: 618 MEEGRR-------------------------IRKAFVPGDENHILLSCDYSQIDLRSLAH 652 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 M+G++ ++ F G D++ T + F V QVT D R K + Sbjct: 653 MSGDENLIETFRQGIDIHHRTASEIFKVPLDQVTPDLRRKAKAVNF-------------- 698 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ A + + + Sbjct: 699 GIVYGISDFGL------------------------------ARGTGVTREEAKAYIERYL 728 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + V E+ + + GR Sbjct: 729 DSYPGVRRYMQEVVAMGRE--------------------------KGYVSTVLGRRRYLP 762 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625 D+ ++ T R +Q S DI+ M++ + ++ Sbjct: 763 DLLSSN---RTVRSMAERMALNAP------IQGTSADIIKLAMLSVYRELKRRNLRSRML 813 Query: 626 LTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY--RK 675 L VHD++V E P + ++L M + +PL+ E + K Sbjct: 814 LQVHDDLVFEVPLEELEEVALLVRDCMENAFE--LKVPLEVEVKVGANWYDMK 864 >gi|224417856|ref|ZP_03655862.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491] gi|253827195|ref|ZP_04870080.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491] gi|313141399|ref|ZP_07803592.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491] gi|253510601|gb|EES89260.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491] gi|313130430|gb|EFR48047.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491] Length = 896 Score = 323 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 94/700 (13%), Positives = 202/700 (28%), Gaps = 166/700 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52 D ET S ++ F+F + H+ Sbjct: 332 IFSFDTETTSLD----------VRKAKIVGFSFSVNGVDCYYIPIAHNYLGVESQVSLEC 381 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKA 111 + +++ + ++ HN ++ +LK F+ + + +++LA Sbjct: 382 ARECIEQIFQ--SQYVIGHNLKYDLEILKTNFDFVLEDFSKVRDSMLLAWLLQS----DT 435 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L +K E+I + +N+ + EY D ++ Sbjct: 436 LCN-LDFLMKKY-FNHEMIHYKD-------IVGKNENFSNILIQHACEYASEDAAACYQL 486 Query: 172 FKRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + +L L + + G +D+ LN + ++ +E+ Sbjct: 487 YFKLRGLMDESLLEIAQKVEFPFIQSLMNMELSGIKIDLEYFLGLNAETREKLHQISEEI 546 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNN 279 L + ++L + LF + L T++ T + VL+S P ++ Sbjct: 547 FVL-ANKRFNLNSPQQLASILFDDLKLEASKKTKSGYSTSELVLNSLYDSHPIIPKILEY 605 Query: 280 RMRASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R + + + L+E SD R+ + G + TGR S QN+P + Sbjct: 606 R-ESFKLYSTYIEPLIEHAKSDLEHRIYTSFMQTG-TSTGRLSSKNPNLQNIPVKTLEGR 663 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R IA E L+ D + IE R+LA + ++ Sbjct: 664 R-------------------------IRKGFIAKENCLLISLDYSQIELRLLAHFSQDKA 698 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + AF D+++ T + F ++ +++RA+ K + L Sbjct: 699 MIDAFLQDADIHLETAKKIFG---EEMAQEKRAVAKSINFGLI----------------- 738 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + + + + + Sbjct: 739 ---------------------------YGMGPKKLSETLKINFQEAKTYIQNYFTSFPMI 771 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 E + + + + R +++ + L Sbjct: 772 KNFLKEQEEFILE--NGYSKTLLGRMRKFDFEGVQEYQKAAFLR---------------- 813 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--AGYDIVLTVHDEIVCE 635 + I Q + DI+ M ++L VHDE++ E Sbjct: 814 ------------------EGINAIFQGSAADIIKMAMNKIMHSSLESKLLLQVHDELIFE 855 Query: 636 TPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 P A + +M + + +PLK + + Sbjct: 856 APKEIASKEAKKIALIMENIAT--LRVPLKCSISIGENWG 893 >gi|15894383|ref|NP_347732.1| DNA polymerase I [Clostridium acetobutylicum ATCC 824] gi|15024015|gb|AAK79072.1|AE007626_6 DNA polymerase I, polA [Clostridium acetobutylicum ATCC 824] gi|325508511|gb|ADZ20147.1| DNA polymerase I [Clostridium acetobutylicum EA 2018] Length = 871 Score = 323 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 95/686 (13%), Positives = 197/686 (28%), Gaps = 156/686 (22%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV-----HDPVMPQVLKEAL 61 D E + + + + + D + + + LKE Sbjct: 319 DTEIYMSYSIGNGELYSKI---YIDTIFMKVE-EKTYIVDLKKIIEQNREDVLKDLKEFF 374 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118 EN + + H+S TVL + I T + LK E + L Sbjct: 375 ENKKIAKIIHDSKNMYTVLMKN-GIKIENLA-FDTAIAEYLINPSKKEYNLKDAAEEMLL 432 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 E+ I + EY D+ E++ ++E Sbjct: 433 LDLTGEDNDIKIKEVYVMDKIYNKLK----------DKIKEY---DMD---ELYYKVE-- 474 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 L + ++ G+ V+ + VE K+ E+ ++ + ++ Sbjct: 475 ----LPLIEVLSSMESEGFKVEKNKLQQIGDKFTVEIAKVKDEIYNMAG-EEFNISSPKQ 529 Query: 239 LKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 L LF + L + T+ +T VL P +V R ++ + L Sbjct: 530 LGKILFEKLDLPVIKKTKTGYSTNAEVLEKLMDKHPIIEKVVYYRQ-LTKLYSTYVEGLK 588 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 ++ D ++ + + TGR S QN+P + E Sbjct: 589 PVIDVDEKIHSSFNQTVTT-TGRLSSTEPNLQNIPIKNEMGRE----------------- 630 Query: 356 PLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R + + ++ AD + IE RVLA +A ++ + AF+ D++ T + Sbjct: 631 --------IRKVFVPENDNCIILSADYSQIELRVLAHIADDENLINAFKHHSDIHTKTAS 682 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 F V +VT R+ K + + Y + Sbjct: 683 EVFRVPIEEVTSRMRSNAKAVNFGIVYGISDFSL-------------------------- 716 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 A + + + +++ V + ++ ++ Sbjct: 717 ------------------AQDIKVSKKEAKEYIDTYFERYPNVKKYLEDIVVTAKK---- 754 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 N+ + R + ++ ++ + R Sbjct: 755 ----------------------NMYVNTIMNRRRIIPEIASSNKIVKG---FGERLAMNT 789 Query: 595 GKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLY 648 +Q + D++ M+N K ++L VHDE++ + L Sbjct: 790 P------IQGSAADLIKLSMVNVYSKIKQLKLKSRLILQVHDELILNVHKDELEKVKELV 843 Query: 649 HL-MTSNPSWAKGLPLKAEGYESKRY 673 L M +PL+ + + Sbjct: 844 KLEMEEVME--LKVPLEVDIESGNTW 867 >gi|70726235|ref|YP_253149.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435] gi|68446959|dbj|BAE04543.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435] Length = 876 Score = 323 bits (828), Expect = 5e-86, Method: Composition-based stats. Identities = 93/663 (14%), Positives = 198/663 (29%), Gaps = 131/663 (19%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81 Y +D ++ F F +D + D P+ L + LEN + +++ + V+ Sbjct: 328 YLQD-TILKFGF-YDGVDHVVIDSDQLKEYPE-LIKWLENETTEKIVYDAKKTY---VVA 381 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 ++DI + ++ + + V +S+ ++ I+ + KG+ Sbjct: 382 HRLDIDIK-NIVFDVMLASYIIDPSRTIDDVNSV--VSNYNQNFVQDDISIYGKGKKRHV 438 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 D H + CK ++ E ++++ L + E L + + + G D+ Sbjct: 439 PEDTILNKHIASITEAIYACKREMVAELESHQQIDLLLNLELPLARILSEMEETGIYTDI 498 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 + + + L + + ++L LF L + T+ +T Sbjct: 499 NDLRQMQSEIQGKLDLLISNIHEAAG-EEFNINSPKQLGVVLFETLELPVIKKTKTGYST 557 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + P + R S+ + L + ++ D R+ A +TGR Sbjct: 558 AVDVLEQLQGQHPIIDYILEYRQ-LSKLQSTYVEGLQKVISKDNRIHTRFNQTLA-QTGR 615 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLV 377 S QN+P + +R S ++ Sbjct: 616 LSSVDPNLQNIPVRLEEGRK-------------------------IRKAFKPTSNDSVIL 650 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA + ++ +AF +D++ T + F+V +V R K + Sbjct: 651 SADYSQIELRVLAHITQDESMKEAFINEKDVHTATAMKVFDVEANEVNALMRRQAKAVNF 710 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 G++ + Sbjct: 711 --------------GIVYGISDYGLSQ------------------------------SLN 726 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + V + +++ + +G Sbjct: 727 ITRKKAKAFIDDYLASFPGVKQYMSDI---VKDAKADGYVETLLH--------------- 768 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R D+ + R +Q + DI+ M+ Sbjct: 769 --------RRRYIPDINSRNF---NLRGFAERTAMNTP------IQGSAADIIKLAMVEF 811 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670 + ++L VHDE++ E P + + S+ + +M +PLK + Sbjct: 812 DRQIKQTSYHAQLLLQVHDELIFEVPANEVEDFSLFVEEIMEHALQ--LDVPLKVDSNYG 869 Query: 671 KRY 673 + Sbjct: 870 STW 872 >gi|226322349|ref|ZP_03797867.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758] gi|225209271|gb|EEG91625.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758] Length = 882 Score = 323 bits (828), Expect = 5e-86, Method: Composition-based stats. Identities = 102/674 (15%), Positives = 189/674 (28%), Gaps = 163/674 (24%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY-------FE 76 +AE+ + F + + M + L EAL H + F+ Sbjct: 344 FAENAEIGGIGISFGKEKIYCIPAGNGYSM-EELLEALV--------HVAKHAGRFVVFD 394 Query: 77 RTV-LKACFNLD-IPIHRWICTLVLARSNGL---PSALKAVG-EALKLSSQKMEEGKELI 130 L L+ + ++V A + V E L L E ++++ Sbjct: 395 LKSSLPYLKGLEGAAEEKCFDSIVAAYLLNPLKNDYGFEDVAQEHLGLMIDPKTELEKMV 454 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190 K E W+LF E E L + Sbjct: 455 CYEAYAAFASSEVLEEKLKKEEMWKLFTE---------------------IEMPLVFTLF 493 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G V+ + + + + +L++E+ L + ++L LF L Sbjct: 494 HMEQNGVRVEAEELKSYGEQLGGKIVQLEKEIYELAG-EEFNINSPKQLGVVLFEHLSLP 552 Query: 251 LEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRG 306 T+ +T VL P ++ R ++ + L ++ D R+ G Sbjct: 553 NGKKTKTGYSTAADVLDKLAPDYPIVAKILEYRQ-LAKLKSTYADGLAVFIHEDDHRIHG 611 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 + TGR S QN+P +R Sbjct: 612 KFNQ-TVTATGRISSTEPNLQNIPARVELGR-------------------------LIRK 645 Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 + EG V AD + IE RVLA +G+ ++A+ +D++ T ++ F+ +VT Sbjct: 646 VFVPEEGYVFVDADYSQIELRVLAHCSGDAALIEAYREAKDIHRITASQVFHTPFDEVTD 705 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 QR K + + Y + L+ Sbjct: 706 LQRRNAKAVNFGIVYG-----ISSFGLSQDLS---------------------------- 732 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + + + + + L A E G + Sbjct: 733 -----------ITRKEAAEYIDRYFETYPGIKKF---LDDAVAHAKEQGYVVTL------ 772 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 GR ++ ++ R +Q + Sbjct: 773 -----------------FGRRRPVPELSSSNFMQRQF---GERVAMNSP------IQGTA 806 Query: 607 RDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAK 659 DI+ M+ K +VL VHDE++ ET +E + M Sbjct: 807 ADIMKIAMIAVDKELRMRNMKSRLVLQVHDELLIETWKEEEEEVREILKEGMMHAAD--L 864 Query: 660 GLPLKAEGYESKRY 673 +PL+ + + K + Sbjct: 865 SVPLEIDMHSGKNW 878 >gi|220931331|ref|YP_002508239.1| DNA polymerase I [Halothermothrix orenii H 168] gi|219992641|gb|ACL69244.1| DNA polymerase I [Halothermothrix orenii H 168] Length = 870 Score = 323 bits (828), Expect = 5e-86, Method: Composition-based stats. Identities = 101/655 (15%), Positives = 184/655 (28%), Gaps = 150/655 (22%) Query: 35 FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94 + + ++ +LK L + V NS E TV ++++ Sbjct: 341 ISLGEGNLYIF--TDINEAISILKPILTDISVKKYILNSK-ECTVFLKKHDIELE-GLVF 396 Query: 95 CTLVLARSNGLPSAL----KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 L+ L + + L LS + + L F K Sbjct: 397 DPLLAYYLLKPSGKLPGLRDLLDQELSLSLPEDIKEDNLYLVFMDNIFKLAEGMVPKLED 456 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 E LF D+ + + + G VD +L++ Sbjct: 457 MELIELF-----NDIEIPL----------------ITVLAELEYNGIKVDAEYLESLSRK 495 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267 + E L+ ++ L + ++L LF + GL + T+ +T +VL + Sbjct: 496 WEEELNGLESKIHELAG-EKFNINSPKQLGGILFEKLGLPVIKKTKTGYSTGAKVLEKLE 554 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPP 326 P + R + ++ L +N D GRL + + + TGR S Sbjct: 555 DKHPIIPLISEYRQ-LMKLKSTYVDALPPMINPDTGRLHTSFNQMV-TATGRLSSTEPNL 612 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIE 385 QN+P + E +R I E L+ AD + IE Sbjct: 613 QNIPVRTDEGRE-------------------------IRRAFITENEDWVLLAADYSQIE 647 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RVLA ++ ++ AF TG+D++ T + F V P +VT + R KV+ Sbjct: 648 LRVLAHISDDEGLKAAFNTGQDIHTQTASEVFEVEPDEVTPNMRRHAKVIN--------- 698 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ A + Sbjct: 699 -----FGIAYGMSP------------------------------YGLARDLGISRQEASD 723 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + ++ + V + + + G Sbjct: 724 YINKYFERFTGVKDYM---ERVVTEAKTKGYVTTIFN----------------------- 757 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620 R ++ + R +Q + DI+ M+ Sbjct: 758 RRRYIPEINSRN---YHRRSFAERTAINTP------IQGTAADIMKLAMIKVYNRLKENG 808 Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 I+L VHDE++ E P D + + M +PL + Sbjct: 809 SPARILLQVHDELILEVPREDLTEMARIVKSEMEKAVD--MKVPLVVNLESGPNW 861 >gi|116872994|ref|YP_849775.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741872|emb|CAK20996.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334] Length = 875 Score = 323 bits (828), Expect = 6e-86, Method: Composition-based stats. Identities = 79/661 (11%), Positives = 176/661 (26%), Gaps = 142/661 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89 + +E +E+ +V ++ V I Sbjct: 333 IGLAIHSDQGTYFFTKETAENSVSFREWVESAQTKVV-----YDAKKTMVAMNRMGFAIS 387 Query: 90 IHRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEE---GKELIARFCKGETHECLY 143 ++ + ++ V + + +E GK + Sbjct: 388 GIT-FDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDEAVYGKGAKRSTPEESIVAGHL 446 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 R A + D+ ++ + E L ++ + +G VD Sbjct: 447 AR----KAVAIAELEKRLVDDLEKNEQLAL----MEDLELPLTFVLAQMEMQGVSVDTER 498 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260 + + L+ + SL + ++L LF + L T+ +T Sbjct: 499 LENMKVELAGRLKTLETSIHSLAG-EEFNINSPKQLGVILFEKLELPPVKKTKTGYSTAA 557 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL S ++ R + + L++ + + T ++TGR S Sbjct: 558 DVLESLSGKHDIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLS 616 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVA 379 QN+P + +R + G K+ A Sbjct: 617 SVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKIFSA 651 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + +E RVLA ++ ++ + AF+ D++ T F+V +V R K + Sbjct: 652 DYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQEEVDSLMRRQAKAVN--- 708 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 G++ + Sbjct: 709 -----------FGIVYGISDYGLSQ------------------------------NLGIT 727 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + + V E +++ + ++ + I Sbjct: 728 RKDAKDFIDRYFVSYPAVKEYMHDIVRFAKE--KGYVETILH------------------ 767 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-- 617 R ++ + R +Q + DI+ + M+ Sbjct: 768 ------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMSE 812 Query: 618 ----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672 + ++L VHDE++ E P+ + + +M + +PLK + Sbjct: 813 RLESEQLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDT 870 Query: 673 Y 673 + Sbjct: 871 W 871 >gi|205374551|ref|ZP_03227347.1| DNA polymerase I [Bacillus coahuilensis m4-4] Length = 876 Score = 323 bits (828), Expect = 6e-86, Method: Composition-based stats. Identities = 92/661 (13%), Positives = 199/661 (30%), Gaps = 131/661 (19%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 + +I + + + + +E L + V +++ LK L Sbjct: 329 NGKIIGYGLS--NQSGHYFIPTDIASESEGWQEWLRDESKEKVVYDAKKSIVALKRQ-GL 385 Query: 87 DIPIHRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLY 143 ++ +L+ A + VG+ LSS + +E + KG Sbjct: 386 ELNGVS-FDSLLAAYIINPAQNHEDFASVGKEYGLSSVQSDE-----QVYGKGAKQAVPN 439 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 H + + + E L ++ + +G VD Sbjct: 440 LDALSEHVARKASMLWDLTEKLKTALKENHQDALFFDLELPLAFILGEMEYQGVKVDRTR 499 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260 ++ + + + +L++++ L + ++L LF + L + T+ +T Sbjct: 500 LTSMGKELGGKLKELEEKIYDLAG-ETFNINSPKQLGVILFEKLELPVIKKTKTGYSTSA 558 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL + + + R + + L++ ++ D T ++TGR S Sbjct: 559 DVLEKLQSKHEIVEYILHYRQ-LGKLNSTYIEGLLKVIHEDSDKVHTRFNQALTQTGRLS 617 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVA 379 QN+P + +R + EG + A Sbjct: 618 STDPNLQNIPIRLEEGRK-------------------------IRQAFVPSKEGWVIFAA 652 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA ++G++ ++AF+ ED++ T F+V+ VT + R K + + Sbjct: 653 DYSQIELRVLAHISGDEKLMEAFQQDEDVHTKTAMEVFSVSKDDVTSEMRRHAKAVNFGI 712 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y + LN+ + + + + + + Sbjct: 713 VYGIS-----DFGLSQSLNITRKEAGEFIERYLDTYPAVKEYMEDIVVEARDKGYVSTL- 766 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 +RR +P + + Sbjct: 767 ----------------------------------------LNRRRYIPELTSRNFNLRSF 786 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 R+ +NT +Q + DI+ + M++ K Sbjct: 787 ---------------GERTAMNT------------------PIQGSAADIIKQAMIDMAK 813 Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672 ++L VHDE++ E P ++ + +M + +PLK + Sbjct: 814 RLEEENIEAKLLLQVHDELIFEAPQSEIEKLKTMVPDVMENAVE--LNVPLKVDFAFGPT 871 Query: 673 Y 673 + Sbjct: 872 W 872 >gi|134299456|ref|YP_001112952.1| DNA polymerase I [Desulfotomaculum reducens MI-1] gi|134052156|gb|ABO50127.1| DNA polymerase I [Desulfotomaculum reducens MI-1] Length = 883 Score = 323 bits (828), Expect = 6e-86, Method: Composition-based stats. Identities = 94/638 (14%), Positives = 182/638 (28%), Gaps = 148/638 (23%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL- 109 VLK E V H++ + + ++++ T+V A ++ Sbjct: 373 DPCLTVLKAICECESVKKYFHDAK-QALWMLHHHSIELKALA-ADTMVSAYLLNPTASNY 430 Query: 110 --KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 V L EG+ + R + R A +LF + + Sbjct: 431 DINDVALEH-LGMVLPAEGE------------TAMASRAEAIRRLAQKLFEKLAERQEDR 477 Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + E L + + G VD ++ + L ++ L Sbjct: 478 LL---------TQVELPLVRILSEMEIAGVAVDKQGLQDMSVELQTVTETLTTKIHELAG 528 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L LF + L + T+ +T VL + + R + Sbjct: 529 -ENFNINSPKQLGPILFEKLKLPVLKKTKTGYSTDAEVLEKLAEEHEIVALILEYRQ-MA 586 Query: 285 RSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L ++ GRL T + TGR S QN+P + + Sbjct: 587 KLKSTYTDGLAALVDPQTGRLHSTFHQ-TVTATGRLSSAEPNLQNIPIRLETGRK----- 640 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R I + G ++ AD + IE RVLA M+ ++ L AF Sbjct: 641 --------------------IRKVFIPRQRGNLILTADYSQIELRVLAHMSQDESFLDAF 680 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G+D++ T + F V QVT + R+ K + + G++ Sbjct: 681 RQGQDIHTRTASEVFGVPMDQVTSEMRSRAKAVNFGIV--------------YGISDFGL 726 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + + + + V + Sbjct: 727 ------------------------------ARDLKVSRKEAQGYIDHYFARCPGVRQY-- 754 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + + ++ E G R ++ + Sbjct: 755 -IDRVIKEAKETGYVNTLLN-----------------------RRRYLPELFSKNF---N 787 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636 R +Q + DI+ M+ +VL VHDE++ + Sbjct: 788 IRNFGERAAMNTP------IQGTAADIIKLAMVKISQQLKEQNLSSQMVLQVHDELIFDA 841 Query: 637 PDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 P+ + + ML M + +PL + + Sbjct: 842 PENEIESLIMLVRQSMENALQ--LDVPLVVDIKLGPNW 877 >gi|193212192|ref|YP_001998145.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327] gi|193085669|gb|ACF10945.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327] Length = 950 Score = 323 bits (827), Expect = 7e-86, Method: Composition-based stats. Identities = 99/694 (14%), Positives = 193/694 (27%), Gaps = 152/694 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----HDPVMPQVLKEA 60 +D ET S + + +F + LK Sbjct: 380 SVDTETTSLD----------TFEAELAGISFSLEPGEAFFVYFGETGLDAKTTVAKLKPL 429 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 LEN ++ N ++ VLK +++ T++ + L + Sbjct: 430 LENPEIGKTGQNLKYDILVLKNY-GVELQPVE-FDTMLASYVLDPESRHNLDDMAALH-- 485 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 L + K + + +Y D +T ++ L Sbjct: 486 ----------LSRQTVKYDELVGTGKSAIGIFEVEPQKLSDYACQDADITLKLRGELAAK 535 Query: 179 SSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 EL + + +G +D L V+ E L + + Sbjct: 536 LEATPELLEVCRTLEFPLVRVLADMEHQGVSIDTEHLAKLAVKVNEELVGLTERIHEAAG 595 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L LF L + T+ +T +VL L P A +V R Sbjct: 596 -ETFNIDSPKQLGHILFDVLKLPTKKATKTGYSTNVQVLEELALLNPIAAEVLEYR-SLQ 653 Query: 285 RSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L + +++ GRL + + TGR S QN+P + +E Sbjct: 654 KLKGTYIEALPKLLHAATGRLHTSFNQSI-TATGRLSSSNPNLQNIPIRTDLGKE----- 707 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R I S L+ AD + IE RV A ++G+ ++AF Sbjct: 708 --------------------IRRAFIPSNPENLLLSADYSQIELRVAAELSGDPMLIEAF 747 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 ED++ T F+ +VT D R K + + Y Q + L + Sbjct: 748 RNHEDIHAATARVIFDT--DEVTSDMRRKAKEVNFGVLYG-----IQPFGLSQRLGIPQK 800 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 ++ ++ + + E + +G R+ ++ Sbjct: 801 EAKEIIDTYMAKYPGMFSALQTTVEEARKLGYVTTLMGR---------RRYVPDLNSPNG 851 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + +A E + + M R L + + Sbjct: 852 NIRKAAE------------RVTMNTPIQGTAADIIKYAMCTISRRLKEERLNS------- 892 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 ++ E++ ETP ++ Sbjct: 893 -----------------------------VMLLQVHD-----------ELLFETPADEQS 912 Query: 643 NASMLYH-LMTSNPSWA--KGLPLKAEGYESKRY 673 + L M S + +P++ E K + Sbjct: 913 RLTELVEKCMVDAASKCGVRNVPVEVETGVGKNW 946 >gi|242308893|ref|ZP_04808048.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489] gi|239524557|gb|EEQ64423.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489] Length = 895 Score = 323 bits (827), Expect = 7e-86, Method: Composition-based stats. Identities = 102/699 (14%), Positives = 207/699 (29%), Gaps = 162/699 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----- 56 D ET S ++ F+F + H+ + + Sbjct: 330 DIFSFDTETTSLE----------VRSAKIVGFSFSVNGVDSYYVPIAHNYLGVEEQVSYE 379 Query: 57 -LKEALE--NTDVTIVAHNSYFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAV 112 KE +E ++ HN ++ +LK F+ + + +++LA A+ Sbjct: 380 CAKEFIEYIFGCKYVIGHNLKYDLEILKTNFDFVLQDFSKIRDSMLLAWLLQS----DAL 435 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 L +K E+I + + + + + EY D +++ Sbjct: 436 CN-LDFLMKKY-FNHEMIHYKD-------IVHKKENFSQILIQYACEYASEDAAACYQLY 486 Query: 173 KRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 +L+ L + + G +D+ L ++ +E+ Sbjct: 487 FKLKGLVDERLMEIAKSVEFPFIQSLMNMELIGIKIDLEFFQELILESRERLHQISEEIF 546 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNR 280 +L + ++L T LF E L T++ T + VL+S P ++ R Sbjct: 547 AL-ANKRFNLNSPQQLATILFEELNLQAGKKTKSGFSTSESVLNSLYDTHPIIPKILEYR 605 Query: 281 MRASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + + L E +D R+ + G + TGR S QN+P + Sbjct: 606 -EFFKLYSTYIEPLSEHAKADLQHRIYTSFMQTG-TSTGRLSSKNPNLQNIPVKTAQGRR 663 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R IA E LV D + IE R+LA + ++ Sbjct: 664 -------------------------IRRGFIAKENHLLVSLDYSQIELRLLAHFSEDEAM 698 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++AF D+++ T + F + +++RAI K + G+ Sbjct: 699 IEAFLKDADIHLETAKKIFG---EDMAQEKRAIAKSINF--------------GLIYGMG 741 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + + + + V Sbjct: 742 P------------------------------KKLSETLKITFQEAKTYIQNYFTSFPTVK 771 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E + + + + R +++ + L Sbjct: 772 EFLKNQEEFILE--NGYSKTLLGRMRKFDFEGVQEYQKAAFLR----------------- 812 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG--YDIVLTVHDEIVCET 636 + I Q + DI+ M TKA ++L VHDE++ E Sbjct: 813 -----------------EGINAIFQGSAADIIKMAMNAITKANLESKLLLQVHDELIFEA 855 Query: 637 PDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 P + + + +M + + +PLK + + Sbjct: 856 PKEIAKKESEEIAKIMENITT--LKVPLKCTISIGENWG 892 >gi|328957053|ref|YP_004374439.1| DNA polymerase I [Carnobacterium sp. 17-4] gi|328673377|gb|AEB29423.1| DNA polymerase I [Carnobacterium sp. 17-4] Length = 887 Score = 323 bits (827), Expect = 8e-86, Method: Composition-based stats. Identities = 82/655 (12%), Positives = 190/655 (29%), Gaps = 127/655 (19%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 F G+ D K ++ + ++ LK ++ I Sbjct: 342 FCIGWGDDQQIYVAEPEVVFASDDFKNWAKDKEAQKQVFDAKRTYVALKRQ---NVDIAS 398 Query: 93 W-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 L+ + K + E + + E + + KG ++ Sbjct: 399 IDFDILLASYLLNTKDNSKDLSEVA--TEHEYYEVSSDESVYGKGAKIAIPEEKTIIYDH 456 Query: 152 EAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 A + + E ++ + + E L + + G V+ + + Sbjct: 457 IARKIKAIRILSKQLGENLEKNEQTKLFNEMELPLSMVLAEMELTGVKVNDKRLMEMKEE 516 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267 + T ++Q + L + ++L LF + G + T+ +T VL + Sbjct: 517 FAIRLTDIEQRVYELAG-EKFNLNSPKQLGVILFEKMGYPVIKKTKTGYSTAVDVLEQLR 575 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P + + R ++ + L++ ++ T ++TGR S Q Sbjct: 576 EQAPIVEHILDYRQ-IAKIQSTYIEGLLKVIDKKTGKIHTRYMQTIAQTGRLSSVDPNLQ 634 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEA 386 N+P + +R + S EG ++ +D + IE Sbjct: 635 NIPIRLEEGRK-------------------------IRQAFVPSHEGWEIFASDYSQIEL 669 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGA 445 RVL ++ ++ +AF G+D++ +T + F + +P +V+ + R K + Sbjct: 670 RVLGHVSDDKLLKEAFIEGQDIHSSTAMQVFGIGSPEEVSSEMRRRAKAVNF-------- 721 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ + + Sbjct: 722 ------GIVYGISDYGLSQ------------------------------NLGISRKEAQH 745 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + +K+ V ++ + + + Sbjct: 746 FIDTYFEKYPGVKTYMEDIVREAKD--------------------------KGFVETLFQ 779 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620 R ++ + R +Q + DI+ M+ + Sbjct: 780 RRRYLPEINSRNF---NLRSFAERTAINTP------IQGSAADIIKIAMIKMDQKLKEST 830 Query: 621 -GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P + +++ +M +PLK + K + Sbjct: 831 MKATMLLQVHDELIFEAPKEEIEQLRALVVEVMEGAVE--LSVPLKVDSNSGKSW 883 >gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216] gi|167658438|gb|EDS02568.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216] Length = 959 Score = 322 bits (826), Expect = 9e-86, Method: Composition-based stats. Identities = 87/692 (12%), Positives = 183/692 (26%), Gaps = 146/692 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC--VHDPVMPQVLKEA 60 D ET + ++ + + + +++ Sbjct: 389 EFCFDTETT----------GFDIFNDRIVGLSLAVRPYEAWYIPFNESNTAEYAALIRPL 438 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + + + N F+ VL ++I R T++L S A++ + Sbjct: 439 FADGKIAKIGQNIKFDLMVLAR-LGVEIR-GRLYDTMILHYLLDPESRHNMDALAMRYLN 496 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177 + LI R + EY D VT + + L P Sbjct: 497 YRPISITSLI----------GKGARQLTMDMISLERVAEYAAEDADVTLRLKQVLWPKVE 546 Query: 178 -------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E+ + + I G +D ++ L+ ++ L Sbjct: 547 ELDLAGLYLEIEEPMIAVLAEIEMAGVRIDSEALAEYAVELNKTLNDLEGDIRRLADEPS 606 Query: 231 SSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + +L LF + + +T+ +T + L + ++ R + Sbjct: 607 LNVNSARQLGEVLFGKLRIAEKPKMTKTKQFSTEEEYLQTFAHKYEIVDKILEYR-GVKK 665 Query: 286 SAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + L +N G++ + + TGR S QN+P Sbjct: 666 LLSTYVEALPLLVNPVTGKIHTSFNQAV-TATGRLSSTNPNLQNIPVRDELGRR------ 718 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +R I S+ L+ AD + +E R++A ++G++ + AFE Sbjct: 719 -------------------IRKAFIPSDDEHLLLSADYSQVELRLMAHLSGDESLIAAFE 759 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 GED++ T AR F A+V D+R K + Y A + L++ Sbjct: 760 HGEDVHAATAARLFGKEVAEVDSDERRKAKTANFGIIYGISA-----FGLSQRLDIPRKE 814 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + + + E G N+ Sbjct: 815 AKEIIEGYFASYPKVKEYMDRVVEEAKRDGYVSTIFGR----------------RRYLND 858 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS-GRSLVYRDVGNNRSYLNT 582 + N A +R V + + + + R + + Sbjct: 859 I------ASRNAVARGLAERNAVNAPIQGSAADIMKIAMIRVSRRFREEGIRSKV----- 907 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 ++ +V + +++ Sbjct: 908 -------------------------------ILQVHDE-----------LVVDMLRSEQE 925 Query: 643 NASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + M S A + L + + Sbjct: 926 RVIAIVTEAMESAA--ALRVRLVVDCGVGDNW 955 >gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium roseum] Length = 917 Score = 322 bits (826), Expect = 1e-85, Method: Composition-based stats. Identities = 100/691 (14%), Positives = 190/691 (27%), Gaps = 132/691 (19%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMPQVLK 58 D ET L + ++ A H + Q L Sbjct: 323 DLETCQAFALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQLDIEQVLQRLA 382 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVG-EAL 116 L + + AH+ ++ VL+ H T++ A G + LK + L Sbjct: 383 PFLRHPEKQRYAHHGKYDALVLERAG--FPRPHIDFDTMIAAYLLGENAVGLKELAFTKL 440 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 +++ E + R +Y DV T + + L Sbjct: 441 GWEMEEITEL-------------IGRGKKQLTMDRAEIARVTQYACADVEATYRLVEVLR 487 Query: 177 PLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P L + + G +DV L+ ++D + L++ + L Sbjct: 488 PQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYELA 547 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + ++L T LF E GL T+ + Q VL + + P + R Sbjct: 548 GHP-FNINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQLL 606 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + ++ L ++ T+ + TGR S QN+P + + Sbjct: 607 -KLKSTYVDALPRQVHPQTGRVHTIFHQTVAATGRLSSSDPNLQNIPARGELGLAVRRAF 665 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 IA E L+ D + IE R++A + + L+AF Sbjct: 666 IADNRPGYR----------------IADEPILLLSVDYSQIELRLMAHFSQDPALLRAFA 709 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V VT + R I KV+ + Y Q ++ Sbjct: 710 EGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGM-----QAYGLARDTGMSRQD 764 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + + + + E + G R + + Sbjct: 765 AQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGR--RRYLPEITSSNPARRQ---A 819 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + G A K + + R L R + + Sbjct: 820 AERMAVNMPLQGTAADIMKLAMIAVH----------------RPLAERGLRS-------- 855 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 ++ +VL E P+++ Sbjct: 856 ----------------------------RMLLQVHDE---LVL--------EVPESELAT 876 Query: 644 ASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + L M+ +PL+ + + Sbjct: 877 TTELVTTRMSRVVE--LSVPLEVDAKAGPNW 905 >gi|332653862|ref|ZP_08419606.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16] gi|332516948|gb|EGJ46553.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16] Length = 900 Score = 322 bits (826), Expect = 1e-85, Method: Composition-based stats. Identities = 105/661 (15%), Positives = 193/661 (29%), Gaps = 134/661 (20%) Query: 33 FAFGFDDHPVEL---WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 F+ P E + + +AL D+ V H + E K + I Sbjct: 350 VCVSFEPSPTEAHGALLFANRLENYNQVLQALFAPDIQKVVHGAK-ELE--KELMDQGIE 406 Query: 90 IHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 T + A + E L + + +E + G ++ Sbjct: 407 PQGIRFDTELAAYLLSPTDGSYDL-EKLGI-TYYNQEFAKAKEYLTPGAFDSLFSLDSEG 464 Query: 149 NHREAWRLFGEYCKG-DVTVT-----REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 F +C D E K + E L + + G VD Sbjct: 465 QSAGPMGAFLSHCALIDALYETLSQRLEELKLTQLYGEIELPLCPVLAEMERSGVLVDRK 524 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + K + L + ++L LF + GL T+ +T Sbjct: 525 ALAAFGEALAQGIEKDQALIYELAG-EEFNINSTQQLGKILFDKLGLPPVKKTKTGYSTN 583 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + P + + R ++ + L + + DGR+ + TGR Sbjct: 584 AEVLEKLRGKHPIIEAILDYRQ-LTKLKSTYADGLGKVIAPDGRIHTCF-QNTVTATGRL 641 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+P + + +R +A+ GK LV A Sbjct: 642 SSTEPNLQNIPIRT-------------------------QLGAQLREMFVAAPGKVLVDA 676 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R+LA MAG+Q ++ F +G D++ T ++ F V P QVT R K + + Sbjct: 677 DYSQIELRLLAHMAGDQAMIEGFHSGADIHTITASQVFGVTPDQVTPQMRRSAKAVNFGI 736 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 G++ + + + Sbjct: 737 V--------------YGISPFSLSQDI------------------------------GVS 752 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + +S V + + + +Q + Sbjct: 753 VQQAKEYMDKYFAHYSGVRAYMDGVVEQGKQ--------------------------DGY 786 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + GR ++ ++ T R +Q + DI+ M+ Sbjct: 787 VATLFGRRRWLPELKSSNF---NTRSFGERVALNMP------IQGTAADIIKLAMIRVRD 837 Query: 620 AGYD------IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKR 672 +VL VHDE++ E P+ + ++ M +PL AE + Sbjct: 838 RLLREGLEGRLVLQVHDELIVECPEAEAETVCRLVKEEMEGVCQ--LSIPLLAETHAGTT 895 Query: 673 Y 673 + Sbjct: 896 W 896 >gi|28198313|ref|NP_778627.1| DNA polymerase I [Xylella fastidiosa Temecula1] gi|182680952|ref|YP_001829112.1| DNA polymerase I [Xylella fastidiosa M23] gi|28056383|gb|AAO28276.1| DNA polymerase I [Xylella fastidiosa Temecula1] gi|182631062|gb|ACB91838.1| DNA polymerase I [Xylella fastidiosa M23] gi|307579419|gb|ADN63388.1| DNA polymerase I [Xylella fastidiosa subsp. fastidiosa GB514] Length = 923 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 96/700 (13%), Positives = 186/700 (26%), Gaps = 157/700 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL------ 57 +D ET S + +I +F + HD P L Sbjct: 346 ALDTETDSLDPM----------QAVLIGLSFASEVGCAAYLPFGHDYPGAPVQLDRGQAL 395 Query: 58 ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111 + LE+ V V + ++ VL+ + + + TL+ + A + Sbjct: 396 ALLQPLLEDAAVRKVGQHGKYDMHVLRRY-GIVLAGYA-DDTLLESFVLTSGHARHDMDT 453 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + G E + + P + +Y D +T + Sbjct: 454 LARRH--------LGYETMKYV----DLVGKGAKQIPFSHVGVQEATQYAAEDADITLRL 501 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + + I G +D + + + Q Sbjct: 502 HCVLAPKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQ 561 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF E L +T + L + + Sbjct: 562 KAMDLAGRH-FNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHALPRVI 620 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ L E ++ GR+ GA+ TGR S QN+P + Sbjct: 621 LEYR-SLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAA-TGRLSSSDPNLQNIPIRTDD 678 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G+KL+ D + IE R++A ++G+ Sbjct: 679 GRR-------------------------IRRAFVAPSGRKLIACDYSQIELRIMAHLSGD 713 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+G D++ A F +VT ++R K + L Y A Sbjct: 714 AGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSA-----FGLAR 768 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L ++ + + +F ++ + + G + + + Sbjct: 769 QLGISRGEAQDYIALYFDRFAGVRDFMENTRQQARDRGYVETVFGR------RLYLNSIA 822 Query: 516 RVSELWN-ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 ++ +A G A KR V + Sbjct: 823 SGNQTQRAGAERAAINAPMQGTAADIIKRAMVAVDGWLGVGG------------------ 864 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 R ++ E+V Sbjct: 865 -----------HRERA---------------------LMILQVHD-----------ELVF 881 Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + + M + +PL + + Sbjct: 882 EADEGFVPTLVHEVSARMAAAAQ--LRVPLVVDVGVGHHW 919 >gi|256544867|ref|ZP_05472238.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170] gi|256399366|gb|EEU12972.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170] Length = 893 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 107/690 (15%), Positives = 209/690 (30%), Gaps = 148/690 (21%) Query: 14 IDLTKCGI----CKYAEDVCVIL----FAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65 D+ K G+ + ED + A +++ D + K+ E + Sbjct: 324 DDIEKDGVFYFKSIFEEDNYIHSNAYKIAIKTSSSKTYIYN--PDEKFVEKFKKYFEADN 381 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125 + V+ + + + ++I + + T+++ + + K Sbjct: 382 IKKVSFDIKEDIVLFDK-LGINISL-PYDDTMLMHYLIDPSRSSYDL---------KTFS 430 Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEY------CKGDVT--VTREIFKR--L 175 L E K G+Y D +T+++ + Sbjct: 431 QAFLKYEVENEEDLLGKGKSKKSYKDLDSDNLGKYLASIVNAIEDSLDILTQKLEELSMY 490 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + E +L + + G+ D + V +E L++ + L + Sbjct: 491 DLYKDCEIKLSKVLADMEITGFICDKNELEKIKDEVSLELGDLEKIIYELAGS-EFNINS 549 Query: 236 LEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L LF + L + T+ +T +VL +K P ++ R + L Sbjct: 550 PKQLSKILFEDLKLPIIKKTKTGYSTNAQVLEKLRKKHPIIEKIERYR-EMYKLKSTYLE 608 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 +L E ++ DGR+R T + + TGR S QNLP + + Sbjct: 609 SLEECIDEDGRIRSTFKQNV-TATGRLSSTEPNLQNLPIRTEEGRK-------------- 653 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R A +GK L+ AD + IE RVLA +A ++ +AF D++ T Sbjct: 654 -----------IRKAFKADDGKVLIDADYSQIELRVLAHLANDKKMQEAFSKDIDIHTKT 702 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 + F+ +VTK QR+ K + + Y GL+ Sbjct: 703 ASEVFSTPIDEVTKLQRSEAKAVNFGIIYGIS---------DYGLS-------------- 739 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 + + + + + + ++ + ++ Sbjct: 740 ---------------------QNLNIPRKRAKEYIENYLDTYPEIKKYMKDIVKKAKE-- 776 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 + + R ++ + R Sbjct: 777 ------------------------DGYVNTIFNRRRYVPEINSKNF---NVRSFGERVA- 808 Query: 593 YGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVHDEIVCETPDTDEFNASM 646 +Q + DI+ M+ N KA IVL +HDEI+ E D A Sbjct: 809 -----LNTPIQGTAADIIKFAMINSYQNLQKAKIDAKIVLQIHDEIIIEASKKDLEKAKE 863 Query: 647 L-YHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + M L + + ES K Sbjct: 864 ILKSSMQDAVDLKVPLLVDIDSGESMYESK 893 >gi|282909001|ref|ZP_06316819.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97] gi|282327265|gb|EFB57560.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97] Length = 876 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 94/687 (13%), Positives = 198/687 (28%), Gaps = 137/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59 ET S ++ + + + F + D + L Sbjct: 302 IET-SFDNVDFTSLKEATIHFELDGGNYLRNNILKFSLFTGEKHIVINADDIINYAELVS 360 Query: 60 ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 LEN + V +++ + V +DI ++ + + V + Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L Q K+ ++ + KG+ + D + + + K ++ E + ++E Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + + G DV + + + + L + + + + Sbjct: 475 LADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF L + T+ +T VL + P + R S+ + L Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ D R+ A +TGR S QN+P + Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635 Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S+ ++ AD + IE RVLA + ++ +AF G+D++ T Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V QV R K + G++ + Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNF--------------GIVYGISDYGLSQ--------- 723 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + V + +++ + + Sbjct: 724 ---------------------SLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAK---- 758 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 + R D+ + R Sbjct: 759 ----------------------ALGFVETLLHRRRYIPDITSRNF---NLRGFAERTAMN 793 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646 +Q + DI+ M+ ++L VHDE++ E P ++ + S Sbjct: 794 TP------IQGSAADIIKLAMVKFAHKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + +PLK + + Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872 >gi|15837705|ref|NP_298393.1| DNA polymerase I [Xylella fastidiosa 9a5c] gi|9106058|gb|AAF83913.1|AE003946_4 DNA polymerase I [Xylella fastidiosa 9a5c] Length = 923 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 96/700 (13%), Positives = 185/700 (26%), Gaps = 157/700 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL------ 57 +D ET S + +I +F + HD P L Sbjct: 346 ALDTETDSLDPM----------QAVLIGLSFAAEVGCAAYLPFGHDYPGAPVQLDRGQAL 395 Query: 58 ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111 + LE+ V V + ++ VL+ + + + TL+ + A + Sbjct: 396 ALLQPLLEDAAVRKVGQHGKYDMHVLRRY-GIVLAGYA-DDTLLESFVLTSGHARHDMDT 453 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + G E + + P + Y D +T + Sbjct: 454 LARRH--------LGYETMKYV----DLVGKGAKQIPFSHVGVQEATRYAAEDADITLRL 501 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + + I G +D + + + Q Sbjct: 502 HCVLAPKLLAEPSLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQ 561 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF E L +T + L + + Sbjct: 562 KAMDLAGRH-FNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHALPRVI 620 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ L E ++ GR+ GA+ TGR S QN+P + Sbjct: 621 LEYR-SLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAA-TGRLSSSDPNLQNIPIRTDD 678 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G+KL+ D + IE R++A ++G+ Sbjct: 679 GRR-------------------------IRRAFVAPSGRKLIACDYSQIELRIMAHLSGD 713 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+G D++ A F +VT ++R K + L Y A Sbjct: 714 AGLVDAFESGVDVHCAIAAEVFGRGIDEVTLNERRAAKAINFGLIYGMSA-----FGLAR 768 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L ++ + + +F ++ + + G + + + Sbjct: 769 QLGISRGEAQDYIALYFDRFAGVRDFMENTRQQARDRGYVETVFGR------RLYLNSIA 822 Query: 516 RVSELWN-ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 ++ +A G A KR V + Sbjct: 823 SGNQTQRAGAERAAINAPMQGTAADIIKRAMVAVDGWLGVGG------------------ 864 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 R ++ E+V Sbjct: 865 -----------HRERA---------------------LMILQVHD-----------ELVF 881 Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + + M + +PL + + Sbjct: 882 EADEGFVPTLVHEVSARMAAAAQ--LRVPLVVDVGVGHHW 919 >gi|313623618|gb|EFR93782.1| DNA polymerase I [Listeria innocua FSL J1-023] Length = 552 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 78/664 (11%), Positives = 176/664 (26%), Gaps = 148/664 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89 + V ++ +E+ + +V ++ V I Sbjct: 10 IGLTVHSSQGTYFFTKETAEKSAVFRDWVESEETKVV-----YDAKKTMVAMNRIGFAIK 64 Query: 90 IHRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 ++ + ++ V + + +E + R+ Sbjct: 65 -GVTFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDE-----------AIYGKGAKRS 112 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVD 200 P + + + LE + E L ++ + +G VD Sbjct: 113 TPEEDIVAAHLARKAVAIAELEKRLVDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVD 172 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + + L++ + SL + ++L LF + L T+ + Sbjct: 173 TQRLGNMKVELAGRLKTLEESIHSLAG-EEFNINSPKQLGVILFEKLELPPVKKTKTGYS 231 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL S ++ R + + L++ + + T ++TG Sbjct: 232 TAADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTG 290 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKL 376 R S QN+P + +R + G K+ Sbjct: 291 RLSSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKM 325 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 AD + +E RVLA ++ ++ + AF+ D++ T F+V +V R K + Sbjct: 326 FSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN 385 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ + Sbjct: 386 --------------FGIVYGISDYGLSQ------------------------------NL 401 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + + V E ++ + ++ + I Sbjct: 402 GITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH--------------- 444 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R ++ + R +Q + DI+ + M+ Sbjct: 445 ---------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMIL 486 Query: 617 A------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 ++L VHDE++ E P+ + + +M + +PLK + Sbjct: 487 MSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAF 544 Query: 670 SKRY 673 + Sbjct: 545 GDTW 548 >gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301] Length = 958 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 90/694 (12%), Positives = 195/694 (28%), Gaps = 150/694 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--VMPQVLKEA 60 D ET + ++ + + + ++++ Sbjct: 388 EFCFDTETT----------GFDIFNDRIVGLSLAVEPFKAWYVPFLEKDTPEYAEIVRPL 437 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 E+ + + N F+ VL+ + I R T++L + A+ E K Sbjct: 438 FEDEKIAKIGQNIKFDLMVLRR-LGITIR-GRMYDTMILHYLLDPESRHNMNALAE--KY 493 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 + K E + LI + EY D VT ++ + L P+ Sbjct: 494 LNYKPIEIETLI----------GKGSKQLTMDLVNVERVKEYAAEDADVTLQLKQALYPM 543 Query: 179 SSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + E+ + + I G +D ++ + +L+ + + Sbjct: 544 IEQIGLQHLYFEIEEPMIAVLADIEMAGMRIDSEALAVYAVELNRKLAELEAAIRTEAGE 603 Query: 229 LVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + +L LF + + +T+T T + L + + R Sbjct: 604 PNLNINSARQLGEVLFGKMRIAEKPKMTKTKQFCTDEDYLQLFARKHRIVDLILEYR-GV 662 Query: 284 SRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + + L + +N S GR+ + + TGR S QN+P Sbjct: 663 KKLLSTYVEALPQLVNRSTGRIHTSFNQAV-TATGRLSSTNPNLQNIPVRDDMGRR---- 717 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R I + L+ AD + +E R++A ++G++ + A Sbjct: 718 ---------------------IRKAFIPSDDDHLLLSADYSQVELRLMAHLSGDESLIAA 756 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE GED++ T A+ FN +VT ++R K + Y A + L + Sbjct: 757 FEHGEDIHAATAAKLFNKTLDEVTSEERRRAKTANFGIIYGISA-----FGLSQRLEIPR 811 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + + + + E E G Sbjct: 812 KEAKEIIDGYFASYPGVKKYMDNVVEKAKEEGFVSTIFGR----------------RRYL 855 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 N++ N A +R V + + + + + Sbjct: 856 NDI------ASHNAIARGLAERNAVNAPIQGSAADIMKIAMINVHRRF------------ 897 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILA-EGMMNATKAGYDIVLTVHDEIVCETPDTD 640 + + + ++ +V + ++ Sbjct: 898 ------------------------AAEGIRSRVILQVHDE-----------LVVDMLRSE 922 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + + M S + L A+ + Sbjct: 923 QERVTAIVTECMESAAQ--LKVRLIADAGVGGNW 954 >gi|317129905|ref|YP_004096187.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522] gi|315474853|gb|ADU31456.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522] Length = 874 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 82/675 (12%), Positives = 196/675 (29%), Gaps = 127/675 (18%) Query: 11 RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVA 70 SP + + + + ++ + ++ + + K+ + Sbjct: 311 YSPSAIVVEVLEENYHNAEIVGISI-VNEVGSYYIP-TEVAINSDMFKKWANDEKNEKWI 368 Query: 71 HNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129 N+ L DI + + + ++ + + ++ K Sbjct: 369 FNAKQAIVSLGWN---DISLRGVTFDIQIASYLIDPSASSHEMADISN--RKRSYTVKSD 423 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189 A + KG+ + + H K ++ + ++ E E L + Sbjct: 424 EAVYGKGKKRQVPEEEIVAQHLVRKAAAINVLKEELESELKENEQFELFKDLEMPLSIVL 483 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G ++ + + + + + +++E+ L + ++L LF + L Sbjct: 484 GHMEMNGISINKEELLQMGETLSDKLSTMEKEIHELAGV-EFNINSPKQLGEILFDKLQL 542 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T+ +T VL + ++ R + + L++ ++ Sbjct: 543 PVVKKTKTGYSTSADVLEQLRDKHEIVEKILLYRQ-LGKLNSTYIEGLLKVIHQKSGKIH 601 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 T+ ++TGR S QN+P + +R Sbjct: 602 TIFNQALTQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRR 636 Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + E + AD + IE RVLA ++ ++ AF+ D++ T F+V+ +VT Sbjct: 637 AFVPERENAVIFAADYSQIELRVLAHISNDENLTNAFKENMDVHTKTAMDVFHVSADEVT 696 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 R K + + Y + L + + + + + + + Sbjct: 697 SLMRRTAKAVNFGIVYGIS-----DYGLSQNLGITRKEAKKFIDRYFDSYPGVKEYMESI 751 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 E + +RR Sbjct: 752 VEEARVNGYVTTM-----------------------------------------LHRRRY 770 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 +P + + R+ +NT +Q Sbjct: 771 LPEITSRNFNLRSF---------------AERTAMNTP------------------IQGS 797 Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + DI+ + M+ + ++L VHDE++ E + L +M + + A Sbjct: 798 AADIIKKAMVKMEEEMKEKGLKSTLLLQVHDELIFEVVQEEIETMKELVPKVMENAVNLA 857 Query: 659 KGLPLKAEGYESKRY 673 +PLK + + Sbjct: 858 --VPLKVDFSFGDTW 870 >gi|258512307|ref|YP_003185741.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479033|gb|ACV59352.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 895 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 95/662 (14%), Positives = 181/662 (27%), Gaps = 147/662 (22%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERTVLKACF-- 84 + A + ++ L + D VA F+ + Sbjct: 361 AEIRGMAVAT-PKRAYYV--RFGERLELSDVRPWLVS-DRPKVA----FDLKSMAFALDA 412 Query: 85 -NLDIPIH-RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 + + W + A GE E G+EL E Sbjct: 413 HGIGLTSECGWQDVKLAAYLLNP-----QDGEVELSDVFARERGQEL------PAWEEGE 461 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 ++ E T + + E L ++ + G+ V+ Sbjct: 462 REKWLAYTASQLPPLFESLA----YTIRMQEMERLYQEVELPLAFVLAKMEITGFYVNRE 517 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 Q + ++ QE+ L + ++L LF + GL T+ +T Sbjct: 518 KLVAFGQELTERIKRITQEIYDLAGTS-FNLNSPKQLGEILFDKLGLPALKKTKTGYSTS 576 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + ++ + R+ ++ + L++ + + T + TGR Sbjct: 577 ADVLEKLAPMHEIVQKILDYRL-LAKLQSTYVEGLLKVIRKETGRVHTRFHQTLTATGRL 635 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVV 378 S QN+P L R + + + Sbjct: 636 SSSEPNLQNIPIRLEEGRRL-------------------------RQVFEPTYKDWVIFA 670 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R+LA ++G++ + AF D++ T A F V P QVT R K + Sbjct: 671 ADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNF- 729 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ A Sbjct: 730 -------------GIVYGISDFGLAQ------------------------------NLNI 746 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +R +++ +K V +E+ +Q E G Sbjct: 747 PQKEAKRFIESYFEKFPGVKRYMDEI---VKQARERGYVTTLMN---------------- 787 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R D+ + R +Q + D++ M+ Sbjct: 788 -------RRRYLPDIHSRN---YQLRSFAERTAMNTP------IQGSAADLIKLAMVRID 831 Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESK 671 +A ++L VHDE++ E P + +L M + + +PLK + Sbjct: 832 RAMRDAQMDARMLLQVHDELIFECPKDELAALEVLVRDNMENAMT--LSVPLKVDTAYGP 889 Query: 672 RY 673 + Sbjct: 890 TW 891 >gi|71276059|ref|ZP_00652340.1| DNA polymerase A [Xylella fastidiosa Dixon] gi|170729656|ref|YP_001775089.1| DNA polymerase I [Xylella fastidiosa M12] gi|71163142|gb|EAO12863.1| DNA polymerase A [Xylella fastidiosa Dixon] gi|167964449|gb|ACA11459.1| DNA-directed DNA polymerase [Xylella fastidiosa M12] Length = 923 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 96/700 (13%), Positives = 186/700 (26%), Gaps = 157/700 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL------ 57 +D ET S + +I +F + HD P L Sbjct: 346 ALDTETDSLDPM----------QAVLIGLSFASEVGCAAYLPFGHDYPGAPVQLDRGQAL 395 Query: 58 ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111 + LE+ V V + ++ VL+ + + + TL+ + A + Sbjct: 396 ALLQPLLEDAAVRKVGQHGKYDMHVLRRY-GIVLAGYA-DDTLLESFVLTSGHARHDMDT 453 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + G E + + P + +Y D +T + Sbjct: 454 LARRH--------LGYETMKYV----DLVGKGAKQIPFSHVGVQEATQYAAEDADITLRL 501 Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L P E L + + I G +D + + + Q Sbjct: 502 HCVLAPKLLAEPILERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQ 561 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276 + L + ++L+ LF E L +T + L + + Sbjct: 562 KAMDLAGRH-FNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHALPRVI 620 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R ++ L E ++ GR+ GA+ TGR S QN+P + Sbjct: 621 LEYR-SLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAA-TGRLSSSDPNLQNIPIRTDD 678 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +A G+KL+ D + IE R++A ++G+ Sbjct: 679 GRR-------------------------IRRAFVAPSGRKLIACDYSQIELRIMAHLSGD 713 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+G D++ A F +VT ++R K + L Y A Sbjct: 714 AGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSA-----FGLAR 768 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L ++ + + +F ++ + + G + + + Sbjct: 769 QLGISRGEAQDYIALYFDRFSGVRDFMENTRQQARDRGYVETVFGR------RLYLNSIA 822 Query: 516 RVSELWN-ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 ++ +A G A KR V + Sbjct: 823 SGNQTQRAGAERAAINAPMQGTAADIIKRAMVAVDGWLGVGG------------------ 864 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 R ++ E+V Sbjct: 865 -----------HRERA---------------------LMILQVHD-----------ELVF 881 Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + + M + +PL + + Sbjct: 882 EADEGFVPTLVHEVSARMAAAAQ--LRVPLVVDVGVGHHW 919 >gi|331084997|ref|ZP_08334084.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408697|gb|EGG88162.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 870 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 85/660 (12%), Positives = 183/660 (27%), Gaps = 158/660 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEA---LENTDVTIVAHNSYFERTVLKACFNLDIP 89 F + + + + L L T V + F+ + ++ Sbjct: 346 VGLAFSEKEIYTI-VAEGELTMEDLFSLVGTLAKTTVV-----ALFDVKAALSYVRIE-D 398 Query: 90 IHRWICTLVLARSNGLPSA----LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 + A + L E L L + EG R Sbjct: 399 PESCFDVGIAAYLLNPLKSDYTWLDVAAEHLSLLIDEKTEGYC----------------R 442 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL--DQTINDRGYCVDVAL 203 + W + ++ + + E+ L + G V+ Sbjct: 443 SCYEAYVIWAAA-------AVLEEKMKESGTEELFRTIEMPLLFTLFAMEQAGVRVEAEA 495 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260 + + + +L++E+ + + ++L LF + L T+ +T Sbjct: 496 LRFYGEQLGTKIVELEKEIYAQAG-EAFNINSPKQLGVILFEKLKLPHGKKTKTGYSTAA 554 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL P ++ R ++ + L + +DGR+ G + TGR S Sbjct: 555 DVLDKLAPEYPVVEKILEYRQ-LTKLKSTYADGLANYICADGRIHGKFNQ-TITATGRIS 612 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380 QN+P +R I EG V AD Sbjct: 613 STEPNLQNIPVRMELGR-------------------------LIRKVFIPEEGYVFVDAD 647 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA +G+Q + A+ +D++ T ++ F+ +VT+ QR K + + Sbjct: 648 YSQIELRILAHCSGDQELIHAYREAKDIHRITASQVFHTPFDEVTELQRRNAKAVNFGIV 707 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L+ Sbjct: 708 YG-----ISSFGLSQDLS---------------------------------------ITR 723 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + + + + ++ ++ + Sbjct: 724 KEASEYIDRYFETYPGIKKFLDDTVAHAKE--------------------------MGYV 757 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-- 618 + GR ++ ++ + R +Q + D++ M+ Sbjct: 758 VTLFGRRRPVPELASSNFMQRSF---GERVAMNAP------IQGTAADVMKIAMIGVHRE 808 Query: 619 ----KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 K +VL VHDE++ E + + + + M +PL+ + + + + Sbjct: 809 LTERKMKSRLVLQVHDELLIEAYEEELEDVKKILKEQMEQAAQ--LDVPLEVDMHTGRNW 866 >gi|229087143|ref|ZP_04219293.1| DNA polymerase I [Bacillus cereus Rock3-44] gi|228696211|gb|EEL49046.1| DNA polymerase I [Bacillus cereus Rock3-44] Length = 884 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 93/659 (14%), Positives = 183/659 (27%), Gaps = 125/659 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + + + L + D+ ++ LK + Sbjct: 336 HKADIQGFG--IQNENGCYFIPSDVALGSEAFTKWLADEDMRKYTFDAKRAIVALKW-KD 392 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 ++I L+ A K K ++ K + KG Sbjct: 393 VEIKGID-FDLLIAAYLLDPADTDKDFRAVAK--MKETHAVKSDEEVYGKGAKRAVPEQG 449 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 H + E ++ E + E L + + +G VD Sbjct: 450 VVAEHVARKVHVLFDVQKTFVEELEKNEQYELFTELEMPLARVLAEMEVKGVKVDTERLR 509 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262 + + +++Q++ L + ++L LF L + T+ +T V Sbjct: 510 NMGDELAGRLKEMEQKIYELAGT-EFNINSPKQLGVVLFENLNLPVIKKTKTGYSTSADV 568 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L + + R + + L++ ++ D T ++TGR S Sbjct: 569 LDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSST 627 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADL 381 QN+P + +R I S EG + AD Sbjct: 628 DPNLQNIPIRLEEGRK-------------------------IRQAFIPSTEGWVMYAADY 662 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + Sbjct: 663 SQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGEDEVTSNMRRQAKAVNF---- 718 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 G++ + Sbjct: 719 ----------GIVYGISDYGLSQ------------------------------NLGITRK 738 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 A + + V E +E+ Q +Q + Sbjct: 739 AAGEFIEKYFASFPGVKEYMDEIVQEAKQ--------------------------KGYVS 772 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NA 617 R ++ + R +Q + DI+ + M+ Sbjct: 773 TLLNRRRYIPEITSRNF---NLRSFAERTAMNTP------IQGSAADIIKKAMIIMANRL 823 Query: 618 TKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 824 EEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSSGPTW 880 >gi|227484612|ref|ZP_03914928.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus ATCC 51172] gi|227237332|gb|EEI87347.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus ATCC 51172] Length = 877 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 98/651 (15%), Positives = 207/651 (31%), Gaps = 128/651 (19%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 + A D + +P LK E+ + ++ + E +L ++ Sbjct: 331 HSEIYSLAIKTKDTDTYII----EPEKISELKNIFEDKTINKISFDIKEEMVLLDK-LDI 385 Query: 87 DIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 D+ I + +++ + LK + ++ + +++ + LI + K + + + Sbjct: 386 DL-IGPYDDLMLMHYLIDPSRSSYDLKLLSQSY--LTYELDSDESLIGKGAKTKKYAEVD 442 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 + + E + V ++ ++ + E+ L + ++ G+ D + Sbjct: 443 QDDLAKLLASQVNAIEDSRDKVFKNLAEYEMVDLYENIEKRLARVLASMEIIGFGTDRKI 502 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260 L ++ + + E+ L + ++L LF + L + T+ +T Sbjct: 503 LEGLKADLEKQIEAITSEIYDLAGS-EFNINSTKQLGEVLFKDLDLPVVKKTKTGFSTDA 561 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 +VL + P ++ R + + L A++ DGR+R T + A TGR S Sbjct: 562 KVLEKLRDKHPIIEKIERYR-EIYKLRSTYIEGLENAIDEDGRIRSTFRQNIA-STGRLS 619 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380 QNLP + +R A EGK L+ AD Sbjct: 620 SQEPNLQNLPIKTDEGRA-------------------------IRKAFKAGEGKILIDAD 654 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA +A ++ AF G D++ T + F+ +VTK QR+ K + + Sbjct: 655 YSQIELRILASLADDKNMQDAFNRGIDIHTQTASEVFHTPLDEVTKLQRSEAKAVNFGII 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y GL+ Sbjct: 715 YGIS---------DYGLS-----------------------------------QNLNIPR 730 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + +++ + ++ E +++ Q + Sbjct: 731 PRAKEYIDKYKKSYPQIKEYMDDVVQLARS--------------------------QGYI 764 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R ++ + R +Q + DI+ M++ Sbjct: 765 ETLFKRRRYIPEISSRNF---NVRSFGERIA------LNTPIQGTAADIIKIAMIDTYNK 815 Query: 621 ------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLK 664 I+L +HDEI+ E+ + D+ A + M L + Sbjct: 816 LKEEGLDAKIILQIHDEIIIESSEKDKEKARDILKKCMEGAAKLKVDLLVD 866 >gi|328950652|ref|YP_004367987.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884] gi|328450976|gb|AEB11877.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884] Length = 834 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 99/608 (16%), Positives = 173/608 (28%), Gaps = 144/608 (23%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135 + TV + + L+LA ++ + Sbjct: 357 DLTVWARREGVRVQPG--EDPLLLAYLYDPTNS-DPAATVRRYG---------------- 397 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195 E WR+ GE G ++ E+ L + + Sbjct: 398 AGDWSEDPAARALAAAELWRILGERLAG----EEALWWLYR---EVERPLAGVLAEMEHA 450 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G VDVA L+ + E ++ E+ L + ++L+ L+ E GL T Sbjct: 451 GVRVDVAYLEALSAELGREIAAIEAEVHRLAGRA-FNLNSRDQLEVILYDELGLTPTRRT 509 Query: 256 -----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 +T L + P ++ R S+ L+ L ++ T Sbjct: 510 QKTGRRSTSAAALEALVGAHPIVERILAYR-ELSKLKGTYLDPLPRLVHPATGRIHTRYH 568 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 + TGR S QN+P + +R +A Sbjct: 569 QTGTATGRLSSSDPNLQNIPVRTEVGRR-------------------------IRRAFVA 603 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 G LV AD + IE RVLA ++G++ + F+ D++ T + F V P V +R Sbjct: 604 EPGYVLVAADYSQIELRVLAHLSGDENLKRVFQERRDIHTQTASWMFGVPPEAVDPFRRR 663 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + G++ + + Sbjct: 664 AAKTVN--------------FGVLYGMSPHRLS--------------------------- 682 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 E ER + + + + RV + + EQ E G Sbjct: 683 ---RELGIEYAEAERFIQRYFESYPRVQAY---IERTLEQAREKGYVETL---------- 726 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 GR D+ + R VQ + D++ Sbjct: 727 -------------FGRRRYIPDIRSRN---RNVREAAERMAFNMP------VQGTAADLM 764 Query: 611 AEGMMN----ATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M+ G ++L VHDE+V E P + + +M WA +PL+ Sbjct: 765 KLAMVKLAPEIRSLGARLILQVHDELVLEAPQERAEAVARVVREVMEGA--WALDVPLEV 822 Query: 666 EGYESKRY 673 E + + Sbjct: 823 EVGIGENW 830 >gi|260584166|ref|ZP_05851914.1| DNA polymerase I [Granulicatella elegans ATCC 700633] gi|260158792|gb|EEW93860.1| DNA polymerase I [Granulicatella elegans ATCC 700633] Length = 883 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 96/661 (14%), Positives = 195/661 (29%), Gaps = 140/661 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFNLDIP 89 A F + V + K+ L + + F+ V F L + Sbjct: 339 LAVAFGTEKQVYVTSIESAVQSEAFKQWLADETIEKT----MFDTKAMKVFANRFGLTVA 394 Query: 90 IHRWICTLVLARSNGLPSALK---AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + +LA + V + +S K +E + KG + ++ Sbjct: 395 GATY-DVSLLAYLVDANEIVNEIYDVAKRFGISLLKTDE-----EVYGKGVKIKVPEEKE 448 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALA 204 + A +++ + +++ + + E EL + + +G VD Sbjct: 449 VFWNHLAAKIYVL-ATAPKRLLKQLDENEQAQLYWEMELPLSDILARMEIQGIRVDQNRL 507 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + +++Q + L + ++L LF + L + T+ +T Sbjct: 508 IEMGLQFEERLKEIEQTIYELAG-EEFNINSPKQLGVILFEKMNLPVIKKTKTGYSTAVD 566 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL +P + R ++ + L ++ G++ ++TGR S Sbjct: 567 VLEKLASQSPIVECILEYRQ-LAKLNSTYVEGLQTYIDEKGKIHTRFVQN-LTQTGRLSS 624 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVAD 380 QN+P + VRS + S KL+ +D Sbjct: 625 QDPNLQNIPIRTEEGR-------------------------QVRSAFLPSHPEWKLLSSD 659 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELAL 439 + IE RVLA MA + ++AF+ D++ T R F + P +VT R K + Sbjct: 660 YSQIELRVLAHMANDVHMIEAFKNNIDIHTNTAMRVFGIQNPEEVTSSMRRQAKAVNF-- 717 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 G++ + Sbjct: 718 ------------GIVYGISDYGLSQ------------------------------NLNIP 735 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + ++ V + + Q N Sbjct: 736 RKKAKEFIDRYLEEFQGVKDYMETIVAEARQ--------------------------NDY 769 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + R ++ ++ R +Q + DIL M+ + Sbjct: 770 VETLFHRRRYLPEIHSSNF---NIRSFAERTAMNSP------IQGTAADILKVAMIELDR 820 Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672 ++L VHDE++ E P+ + + L +M + S +PLKA+ Sbjct: 821 ELTERNFQAKLLLQVHDELIFEVPEEEVESLQSLVEEVMENAVS--LSVPLKADSNIGNN 878 Query: 673 Y 673 + Sbjct: 879 W 879 >gi|224436959|ref|ZP_03657940.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] gi|313143431|ref|ZP_07805624.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] gi|313128462|gb|EFR46079.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] Length = 913 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 100/681 (14%), Positives = 198/681 (29%), Gaps = 163/681 (23%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHD------PVMPQVLKEALENT-DVTIVAHNSYFERT 78 ++ ++ F+F FD H + Q K A+ ++ HN F+ + Sbjct: 359 QEAQLVGFSFCFDGKNAYYVPVGHRYLGVGNQLNLQEAKSAISRIFTHPLIGHNLKFDFS 418 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIARFCK- 135 ++ L+ I + +++L+ P L K+++ F Sbjct: 419 LIYRTLGLE-HIGKIYDSMILSWLYDSIAPVGLD----------------KQMLKWFNHT 461 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE------------- 182 + + + + + + +Y D T +++ RLE K Sbjct: 462 MISFDSVVPKGENFSQVNIITATQYAAEDAAATFKLYHRLEDEFHKREWGGILELAQNLE 521 Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 + + G VD+ L L +L Q++ L + ++L Sbjct: 522 YPFIKVLMDMELEGIRVDIGLLEILKDKSSEHIAELSQKIYDLCG-ETFNLNSPQQLAHI 580 Query: 243 LFLETGLHLE---DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA-- 297 LF GL +T ++ L + P + + R +++ + L+ Sbjct: 581 LFENLGLKPGRSVKGGLSTDEKTLLAIIDSHPVIDLILDYR-ESNKLKSTYIEPLLRLGR 639 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 N R+ + G + TGR S QN+P + Sbjct: 640 TNETHRIHTSFLQNG-TATGRLSSKSPNLQNIPVRREEGRK------------------- 679 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R I+ EG L+ D + IE R+LA + +++F +D++ T AR F Sbjct: 680 ------IRQAFISKEGHSLISIDYSQIELRLLAHFCKDPSLVESFMQDKDIHFETAARLF 733 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 Q +R I K + L Y G+ Sbjct: 734 G---EQEAMQKRFIAKSINFGLIYGMGS-------------------------------- 758 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 + + + +++ + + N + + Sbjct: 759 ------------KKLSQTLQIPLKQAKEYIESYFALFPTIKDFLNAQEEFLLE--NGYSQ 804 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 + RR L + Sbjct: 805 TLLGHRRYFDFKRATDFMKANFLR----------------------------------EG 830 Query: 598 TENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMT 652 +I Q + D++ M K ++L VHDE++ E P + E A + +M Sbjct: 831 INSIFQGSAADLIKLSMCEIHKRYAKSDLKMLLQVHDELIFEAPSERAENYAKEVADIMN 890 Query: 653 SNPSWAKGLPLKAEGYESKRY 673 S + +PLK + Sbjct: 891 SI--YKLEVPLKCGIAIGTNW 909 >gi|325281339|ref|YP_004253881.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712] gi|324313148|gb|ADY33701.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712] Length = 896 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 79/662 (11%), Positives = 191/662 (28%), Gaps = 138/662 (20%) Query: 33 FAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 F H V + +D + + EN + +++ + + LK + + Sbjct: 348 LCFSTKLHEVSYINLPNDKNKALEIILQFQAIFENKNKILISADVKNDIIWLKRA-GIKL 406 Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM-EEGKELIARFCKGETHECLYDRNK 147 + + + AL+ + K+ KE + + D + Sbjct: 407 K-NDIFDIKIAHYVLHPDISHDLGRVALEYLNYKLSGSKKEDQQLTLQFDEEAGTEDNDF 465 Query: 148 PNHREAWRLFGEYCKGDVTVT--REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 + E D+ T ++ ++ E L ++ + G +D Sbjct: 466 AEKTDVIFQLHEKLCDDLQQTGLLALY------NNIEMPLVFVLADMEYEGVSIDCNELQ 519 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQ 260 +++ + +++E+ L + ++L LF + + + +T + Sbjct: 520 SISSELKERIDIIEKEIYEL-AHQEFNISSPKQLGEVLFDKLKIDSNHKKTKSGQYSTSE 578 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRW 319 +VL + P ++ + R + L ++ G++ A+ TGR Sbjct: 579 QVLVKLEDEHPIINKILDYR-GLKKLLTTYAEALPSFIDPGTGKIHTHFNQAEAA-TGRL 636 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVV 378 S QN+P + + +R + + Sbjct: 637 SSLNPNLQNIPIRTEEGRK-------------------------IRKAFVTGNDDYLFFS 671 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + +E R++A ++ ++ + AF G D++ T ++ ++V +VT + R K Sbjct: 672 ADYSQVELRLMAHLSQDKELIHAFNHGIDVHTATASKIYHVTLEEVTPEMRRRAKTANF- 730 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ A Sbjct: 731 -------------GIIYGIS------------------------------AWGLAERLHI 747 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + + + + V + E + + Sbjct: 748 SRKEGKELIDGYFDLYPGVKKYMEESVEKARK--------------------------KE 781 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM--- 615 + GR RD+ + + + R +Q + DI+ M+ Sbjct: 782 FVETIMGRRRYLRDINSRNAVVRGM---AERNAINAP------IQGSAADIIKMAMICIQ 832 Query: 616 -NATKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 + G +++ VHDE+ + ++++ L + M +PL Sbjct: 833 KRIQEEGLMSRMIIQVHDELNFKCHKSEQYLLKSLVTNCMEHVIK--LSVPLTVSTGFGN 890 Query: 672 RY 673 + Sbjct: 891 NW 892 >gi|325661247|ref|ZP_08149874.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472754|gb|EGC75965.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium 4_1_37FAA] Length = 870 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 85/660 (12%), Positives = 183/660 (27%), Gaps = 158/660 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEA---LENTDVTIVAHNSYFERTVLKACFNLDIP 89 F + + + + L L T V + F+ + ++ Sbjct: 346 VGLAFSEKEIYTI-VAEGELTMEDLFSLVGTLAKTTVV-----ALFDVKAALSYVRIE-D 398 Query: 90 IHRWICTLVLARSNGLPSA----LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 + A + L E L L + EG R Sbjct: 399 PESCFDVGIAAYLLNPLKSDYTWLDVAAEHLSLLIDEKTEGYC----------------R 442 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL--DQTINDRGYCVDVAL 203 + W + ++ + + E+ L + G V+ Sbjct: 443 SCYEAYVIWAAA-------AVLEEKMKESGTEELFRTIEMPLLFTLFAMEQAGVRVEAEA 495 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260 + + + +L++E+ + + ++L LF + L T+ +T Sbjct: 496 LRLYGEQLGTKIVELEKEIYAQAG-EAFNINSPKQLGVILFEKLRLPHGKKTKTGYSTAA 554 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL P ++ R ++ + L + +DGR+ G + TGR S Sbjct: 555 DVLDKLAPEYPVVEKILEYRQ-LTKLKSTYADGLANYICADGRIHGKFNQ-TITATGRIS 612 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380 QN+P +R I EG V AD Sbjct: 613 STEPNLQNIPVRMELGR-------------------------LIRKVFIPEEGYVFVDAD 647 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA +G+Q + A+ +D++ T ++ F+ +VT+ QR K + + Sbjct: 648 YSQIELRILAHCSGDQELIHAYREAKDIHRITASQVFHTPFDEVTELQRRNAKAVNFGIV 707 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L+ Sbjct: 708 YG-----ISSFGLSQDLS---------------------------------------ITR 723 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + + + + ++ ++ + Sbjct: 724 KEASEYIDRYFETYPGIKKFLDDTVAHAKE--------------------------MGYV 757 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-- 618 + GR ++ ++ + R +Q + D++ M+ Sbjct: 758 VTLFGRRRPVPELASSNFMQRSF---GERVAMNAP------IQGTAADVMKIAMIGVHRE 808 Query: 619 ----KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 K +VL VHDE++ E + + + + M +PL+ + + + + Sbjct: 809 LTERKMKSRLVLQVHDELLIEAYEEELEDVKKILKEQMEQAAQ--LDVPLEVDMHTGRNW 866 >gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5] Length = 958 Score = 320 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 92/694 (13%), Positives = 189/694 (27%), Gaps = 150/694 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM--PQVLKEA 60 D ET + ++ + + + ++++ Sbjct: 388 EFCFDTETT----------GFDIFNDRIVGMSLAVNPFEAWYIPFKEENTAEYTEIVRPL 437 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 EN + + N F+ VL L+I ++ T++L + A+ E K Sbjct: 438 FENDRIAKIGQNIKFDLMVL-RQLGLEIRGRKY-DTMILHYLLDPESRHNMNALAE--KY 493 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 + K E + LI + EY D VT + L P Sbjct: 494 LNYKPIEIETLI----------GKGSKQLTMDLVNVERVKEYAAEDADVTLRLKHALYPQ 543 Query: 179 SS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E+ + + I G +D + + +L+ + Sbjct: 544 IEELGLQHLYFEIEEPMIAVLADIEMAGVRIDSEALAVYSVELSRRLAELEAAICEEAGE 603 Query: 229 LVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + +L LF + + +T+T T + L S + R Sbjct: 604 SQLNINSARQLGEVLFGKMRIAEKPKMTKTKQFCTDEDYLQSFAHKHRIVDLILEYR-GV 662 Query: 284 SRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + + L + +N GR+ + + TGR S QN+P Sbjct: 663 KKLLSTYVEALPQLVNRRTGRIHTSFNQAV-TATGRLSSTNPNLQNIPVREEMGRR---- 717 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R I E L+ AD + +E R++A ++G++ + A Sbjct: 718 ---------------------IRRAFIPSDEEHLLLSADYSQVELRLMAHLSGDESLIAA 756 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F GED++ T A+ FN +VT ++R K + Y A + L + Sbjct: 757 FAHGEDIHAATAAKLFNKTLDEVTSEERRRAKTANFGIIYGISA-----FGLSQRLEIPR 811 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + + + + E G Sbjct: 812 KEAKEIIDGYFASYPKVQEYMDNVVAKAKEEGFVSTIFGR----------------RRYL 855 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS-GRSLVYRDVGNNRSYL 580 N++ N A +R V + + + + + R + + Sbjct: 856 NDI------ASHNAIARGLAERNAVNAPIQGSAADIMKIAMINVHRRFAAEGIRSKV--- 906 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 ++ E+V + ++ Sbjct: 907 ---------------------------------ILQVHD-----------ELVVDMLRSE 922 Query: 641 EFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +++ M S A + L + + Sbjct: 923 QERVVAIVTEAMESAA--ALKVRLVVDYGVGGNW 954 >gi|314933844|ref|ZP_07841209.1| DNA polymerase I [Staphylococcus caprae C87] gi|313653994|gb|EFS17751.1| DNA polymerase I [Staphylococcus caprae C87] Length = 887 Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats. Identities = 95/657 (14%), Positives = 194/657 (29%), Gaps = 130/657 (19%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLKACFNLD 87 ++ F F DD V + D Q L + LE+ + +++ + V N+D Sbjct: 344 ILKFGFYADDSHVVI--NAEDIKQYQDLVQWLEDKNTIKTVYDAKKTY---VAAHRLNID 398 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 I + ++ + ++ V +S K+ ++ + KG+ H+ + Sbjct: 399 IQNVQ-FDVMLSSYIIDPSRSIDDVKSV--VSLYGQNYVKDNVSVYGKGKKHQVPEEEVL 455 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 H + K ++ E + ++E L E L + + + G DV + Sbjct: 456 NKHVASITEAIANSKPEMEAQLEEYNQVELLKDLELPLAKILSEMEEIGIYTDVEDLKQM 515 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 + + L + + + ++L LF L + T+ +T VL Sbjct: 516 ENEIQEKLDVLIKNIHEAAG-EEFNINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVLE 574 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + P + R S+ + L + ++ D R+ A +TGR S Sbjct: 575 QLQGEHPIIEHILEYRQ-LSKLQSTYVEGLQKVISKDQRIHTRFNQTLA-QTGRLSSVDP 632 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAG 383 QN+P + +R + ++ AD + Sbjct: 633 NLQNIPIRLEEGRK-------------------------IRKAFKPTDKDSVILSADYSQ 667 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA + ++ +AF G D++ T + FNV +V R K + Sbjct: 668 IELRVLAHITQDESLKEAFINGNDIHTATAMKVFNVEANEVDSLMRRQAKAVNF------ 721 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G++ + Sbjct: 722 --------GIVYGISDYGLSQ------------------------------SLGITRKKA 743 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + V + +++ + G Sbjct: 744 KAFIDDYLASFPGVKQYMSDI---VKDAKAEGYVETLLH--------------------- 779 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620 R D+ + R +Q + DI+ M+ + Sbjct: 780 --RRRYIPDITSRNF---NLRSFAERTAMNTP------IQGSAADIIKLAMVKFYEKVKD 828 Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P ++ + S + +M +PLK + + Sbjct: 829 TNYHATLLLQVHDELIFELPKSEVEDFSKFVEEIMEQALD--LDVPLKVDSSYGPTW 883 >gi|16800668|ref|NP_470936.1| DNA polymerase I [Listeria innocua Clip11262] gi|16414087|emb|CAC96831.1| DNA polymerase I [Listeria innocua Clip11262] Length = 875 Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats. Identities = 78/664 (11%), Positives = 175/664 (26%), Gaps = 148/664 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89 + V + +E+ + +V ++ V I Sbjct: 333 IGLTVHSSQGTYFFTKETAEKSAVFRNWVESDETKVV-----YDAKKTMVAMNRIGFAIK 387 Query: 90 IHRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 ++ + ++ V + + +E + R+ Sbjct: 388 -GVTFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDE-----------AIYGKGAKRS 435 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVD 200 P + + + LE + E L ++ + +G VD Sbjct: 436 TPEENIVAAHLARKAVAIAELEKRLVDDLEENEQLALMEDLELPLTFVLAQMEMQGVSVD 495 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + + L++ + SL + ++L LF + L T+ + Sbjct: 496 TKRLENMKVELAGRLKTLEESIHSLAG-EEFNINSPKQLGVILFEKLELPPVKKTKTGYS 554 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL S ++ R + + L++ + + T ++TG Sbjct: 555 TAADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTG 613 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKL 376 R S QN+P + +R + G K+ Sbjct: 614 RLSSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKM 648 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 AD + +E RVLA ++ ++ + AF+ D++ T F+V +V R K + Sbjct: 649 FSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN 708 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ + Sbjct: 709 --------------FGIVYGISDYGLSQ------------------------------NL 724 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + + V E ++ + ++ + I Sbjct: 725 GITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH--------------- 767 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R ++ + R +Q + DI+ + M+ Sbjct: 768 ---------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMIL 809 Query: 617 A------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 ++L VHDE++ E P+ + + +M + +PLK + Sbjct: 810 MSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAF 867 Query: 670 SKRY 673 + Sbjct: 868 GDTW 871 >gi|15924680|ref|NP_372214.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50] gi|15927268|ref|NP_374801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315] gi|148268170|ref|YP_001247113.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9] gi|150394237|ref|YP_001316912.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1] gi|156980007|ref|YP_001442266.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3] gi|253317166|ref|ZP_04840379.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006474|ref|ZP_05145075.2| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794075|ref|ZP_05643054.1| DNA polymerase I [Staphylococcus aureus A9781] gi|258415779|ref|ZP_05682050.1| DNA polymerase I [Staphylococcus aureus A9763] gi|258421984|ref|ZP_05684904.1| DNA polymerase I [Staphylococcus aureus A9719] gi|258438258|ref|ZP_05689542.1| DNA polymerase I [Staphylococcus aureus A9299] gi|258443716|ref|ZP_05692055.1| DNA polymerase I [Staphylococcus aureus A8115] gi|258445927|ref|ZP_05694103.1| DNA polymerase I [Staphylococcus aureus A6300] gi|258448392|ref|ZP_05696509.1| DNA polymerase I [Staphylococcus aureus A6224] gi|258454127|ref|ZP_05702098.1| DNA polymerase I [Staphylococcus aureus A5937] gi|269203308|ref|YP_003282577.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98] gi|282893185|ref|ZP_06301419.1| DNA polymerase I [Staphylococcus aureus A8117] gi|295406000|ref|ZP_06815808.1| DNA polymerase I [Staphylococcus aureus A8819] gi|296274883|ref|ZP_06857390.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MR1] gi|297245074|ref|ZP_06928951.1| DNA polymerase I [Staphylococcus aureus A8796] gi|13701486|dbj|BAB42780.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315] gi|14247462|dbj|BAB57852.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50] gi|147741239|gb|ABQ49537.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9] gi|149946689|gb|ABR52625.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1] gi|156722142|dbj|BAF78559.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3] gi|257788047|gb|EEV26387.1| DNA polymerase I [Staphylococcus aureus A9781] gi|257839372|gb|EEV63845.1| DNA polymerase I [Staphylococcus aureus A9763] gi|257842028|gb|EEV66457.1| DNA polymerase I [Staphylococcus aureus A9719] gi|257848302|gb|EEV72293.1| DNA polymerase I [Staphylococcus aureus A9299] gi|257851122|gb|EEV75065.1| DNA polymerase I [Staphylococcus aureus A8115] gi|257855169|gb|EEV78108.1| DNA polymerase I [Staphylococcus aureus A6300] gi|257858360|gb|EEV81245.1| DNA polymerase I [Staphylococcus aureus A6224] gi|257863579|gb|EEV86336.1| DNA polymerase I [Staphylococcus aureus A5937] gi|262075598|gb|ACY11571.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98] gi|282764503|gb|EFC04629.1| DNA polymerase I [Staphylococcus aureus A8117] gi|285817373|gb|ADC37860.1| DNA polymerase I [Staphylococcus aureus 04-02981] gi|294968997|gb|EFG45018.1| DNA polymerase I [Staphylococcus aureus A8819] gi|297178154|gb|EFH37402.1| DNA polymerase I [Staphylococcus aureus A8796] gi|312830068|emb|CBX34910.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130676|gb|EFT86662.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS03] gi|329727254|gb|EGG63710.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21172] Length = 876 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59 ET S ++ + + A + F + D L Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360 Query: 60 ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 LEN + V +++ + V +DI ++ + + V + Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L Q K+ ++ + KG+ + D + + + K ++ E + ++E Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + + G DV + + + + L + + + + Sbjct: 475 LADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF L + T+ +T VL + P + R S+ + L Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ D R+ A +TGR S QN+P + Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635 Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S+ ++ AD + IE RVLA + ++ +AF G+D++ T Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V QV R K + + Y + L + + Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + ++ + Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +RR +P + + R+ +NT Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646 +Q + DI+ M+ + ++L VHDE++ E P ++ + S Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + +PLK + + Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872 >gi|313618759|gb|EFR90664.1| DNA polymerase I [Listeria innocua FSL S4-378] Length = 552 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 77/640 (12%), Positives = 173/640 (27%), Gaps = 148/640 (23%) Query: 57 LKEALENTDVTIVAHNSYFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKA-- 111 + +E+ + +V ++ V I ++ + ++ Sbjct: 34 FRNWVESDETKVV-----YDAKKTMVAMNRIGFAIK-GVTFDIMLASYLLNPSDSIDDFT 87 Query: 112 -VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 V + + +E + R+ P + + Sbjct: 88 SVAVRHDYTEVETDE-----------AIYGKGAKRSTPEENIVAAHLARKAVAIAELEKR 136 Query: 171 IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + LE + E L ++ + +G VD + + L++ + S Sbjct: 137 LVDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTKRLENMKVELAGRLKTLEESIHS 196 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 L + ++L LF + L T+ +T VL S ++ R Sbjct: 197 LAG-EEFNINSPKQLGVILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQ 255 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ + + T ++TGR S QN+P + Sbjct: 256 -LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRK--- 311 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R + G K+ AD + +E RVLA ++ ++ + Sbjct: 312 ----------------------IRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIY 349 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ D++ T F+V +V R K + G++ Sbjct: 350 AFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN--------------FGIVYGISDY 395 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + V E Sbjct: 396 GLSQ------------------------------NLGITRKEAKDFIDRYFVSYPAVKEY 425 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 ++ + ++ + I R ++ + Sbjct: 426 MQDIVRFAKE--KGYVETILH------------------------RRRYIPEIVSRNF-- 457 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 R +Q + DI+ + M+ ++L VHDE++ Sbjct: 458 -NVRGFAERTAMNTP------IQGSAADIIKKAMILMSERLKSENLEAKLLLQVHDELIF 510 Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 E P+ + + +M + +PLK + + Sbjct: 511 EAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 548 >gi|282927820|ref|ZP_06335431.1| DNA polymerase I [Staphylococcus aureus A10102] gi|282590330|gb|EFB95409.1| DNA polymerase I [Staphylococcus aureus A10102] Length = 876 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59 ET S ++ + + A + F + D L Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360 Query: 60 ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 LEN + V +++ + V +DI ++ + + V + Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L Q K+ ++ + KG+ + D + + + K ++ E + ++E Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + + G DV + + + + L + + + + Sbjct: 475 LADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF L + T+ +T VL + P + R S+ + L Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ D R+ A +TGR S QN+P + Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635 Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S+ ++ AD + IE RVLA + ++ +AF G+D++ T Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V QV R K + + Y + L + + Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + ++ + Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +RR +P + + R+ +NT Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646 +Q + DI+ M+ + ++L VHDE++ E P ++ + S Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + +PLK + + Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872 >gi|158604923|gb|ABW74743.1| DNA polymerase I (POL I) [Campylobacter concisus 13826] Length = 878 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 96/700 (13%), Positives = 192/700 (27%), Gaps = 169/700 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVL 57 + D ET + ++ F+F F+D H + Sbjct: 317 IVAFDTETTGVDS----------KSAKIVGFSFSFNDEDAYYVPVAHNYLGAPKQIDLKF 366 Query: 58 KEALENTDVTI---VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAV 112 + + N ++ ++K L+ P + T++LA + S+ + A+ Sbjct: 367 ATW-AVGQIYKGCVIGQNLKYDFEIVKNNLGLN-PPANFKDTMILAWLSDPNSSVGMDAL 424 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + L E + + + +Y D +T + + Sbjct: 425 AKRL---------------YDYDTIKFEDVVKKGQTFGDVPLENAAKYAAEDAWITLKFY 469 Query: 173 KRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 K + + G ++ A L D + L E+ Sbjct: 470 KTFQNTLDPNLLALADMHEFPFILTLFDMEQNGIKINEAKMQKLILENDTKLKALTSEIY 529 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL---TETTCQRVLSSNKKLTPQAIQVFNNR 280 L+ + +++L LF L + +T + VL+ P ++ R Sbjct: 530 ELSG-ENFNINSVKQLGVILFEHLKLPTKKKTKTGYSTDESVLAELIDAHPVVGKILAYR 588 Query: 281 MRASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + L+ D R+ + G + TGR S QN+P Sbjct: 589 -ELYKLQSTYCEPLLALAKKDEGSRIYTSFLQTG-TSTGRLSSKNPNLQNIPARG----- 641 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 ++ VR C A EG V D + IE R+LA + + Sbjct: 642 --------------------SLAKDVRECFEAREGYSFVGLDYSQIELRLLAHFSRDPAL 681 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF+ ED++ T F + RA+ K + L Y G+ Sbjct: 682 LEAFKNDEDIHARTAISIFGSS----DGQNRAVAKSINFGLIY--------------GMG 723 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + A+ V + + + + + + Sbjct: 724 SSKLANQVNI------------------------------TRAEAKEYIERYFKAFATIK 753 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E + + + + GR + D + Sbjct: 754 EFLESIKISAKN--------------------------EGFVQTLLGRKRYF-DFKSATP 786 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT---KAGYDIVLTVHDEIVCE 635 + + + Q + D++ M+ ++L +HDE++ E Sbjct: 787 MQ---------MAMFEREAVNTVFQGSAADLVKMAMVKVRANLDKNASMLLQIHDELIFE 837 Query: 636 TPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674 D M + +PLK +K + Sbjct: 838 VKDEFAQEFGRATQKTMEEI--YTLNVPLKTSLNIAKNWG 875 >gi|325849919|ref|ZP_08170958.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325479943|gb|EGC83026.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 778 Score = 320 bits (819), Expect = 7e-85, Method: Composition-based stats. Identities = 100/660 (15%), Positives = 193/660 (29%), Gaps = 142/660 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A +++ D K+ E+ ++ V+ + + VL ++I Sbjct: 236 IAIKSPSSKTFIYN--PDQKFVDNFKKYFEDENINKVSFDIKEDI-VLFNKLGIEINF-P 291 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 + +++ + + K L E K Sbjct: 292 YDDIMLMHYLIDPSRSSYDL---------KTFSQAFLKYEVLNEEDLLGKGRNKKSYKDL 342 Query: 153 AWRLFGEY------CKGDVT--VTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVA 202 + + G+Y D +T ++ + E E +L + + G+ D Sbjct: 343 SEKELGKYLSSIINAIEDSLDILTDKLKELSMYELYKDCEIKLSKVLADMEITGFVCDKN 402 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + V VE L++ + L + ++L LF + L + T+ +T Sbjct: 403 ELEKIKDEVSVELEGLEKIIYELAGS-EFNINSPKQLSIILFEDLELPIIKKTKTGYSTD 461 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 +VL + P ++ R + L +L E ++ DGR+R T + + TGR Sbjct: 462 AKVLEKLRDKHPIIGKIERYR-EMYKLKSTYLESLEECIDGDGRIRSTFKQNV-TATGRL 519 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QNLP + + +R A K L+ A Sbjct: 520 SSTEPNLQNLPIRTEEGRK-------------------------IRKAFKADNEKILIDA 554 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA +A ++ +AF D++ T + FN +VTK QR+ K + + Sbjct: 555 DYSQIELRVLAHLANDKKMQEAFSHDIDIHTKTASEVFNTPIDEVTKLQRSEAKAVNFGI 614 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y GL+ Sbjct: 615 IYGIS---------DYGLS-----------------------------------QNLNIP 630 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + + + ++ + ++ + ++ Sbjct: 631 RKRAKEYIENYLNTYPQIKKYMKDIVKKAKE--------------------------EGF 664 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM---- 615 + R ++ + R +Q + DI+ M+ Sbjct: 665 VNTIFNRRRYVPEINSKNF---NVRSFGERVA------LNTPIQGSAADIIKFAMINSYE 715 Query: 616 --NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKR 672 K IVL +HDEI+ E D A + M +PL + Sbjct: 716 NLKKAKVDAKIVLQIHDEIIIEASKKDLQKAKEILKSSMEEAV--NLKVPLLVDIDSGDS 773 >gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I [Thermomicrobium roseum] Length = 917 Score = 320 bits (819), Expect = 7e-85, Method: Composition-based stats. Identities = 100/691 (14%), Positives = 191/691 (27%), Gaps = 132/691 (19%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMPQVLK 58 D ET L + ++ A H + Q L Sbjct: 323 DLETCQAFALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQLDIEQVLQRLA 382 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVG-EAL 116 L + + AH+ ++ VL+ H T++ A G + LK + L Sbjct: 383 PFLRHPEKQRYAHHGKYDALVLERAG--FPRPHIDFDTMIAAYLLGENAVGLKELAFTKL 440 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 +++ E + R +Y DV T + + L Sbjct: 441 GWEMEEITEL-------------IGRGKKQLTMDRAEIARVTQYACADVEATYRLVEVLR 487 Query: 177 PLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P L + + G +DV L+ ++D + L++ + L Sbjct: 488 PQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYELA 547 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + + ++L T LF E GL T+ + Q VL + + P + R Sbjct: 548 GHPL-NINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQLL 606 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + ++ L ++ T+ + TGR S QN+P + + Sbjct: 607 -KLKSTYVDALPRQVHPQTGRVHTIFHQTVAATGRLSSSDPNLQNIPARGELGLAVRRAF 665 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 IA E L+ D + IE R++A + + L+AF Sbjct: 666 IADNRPGYR----------------IADEPILLLSVDYSQIELRLMAHFSQDPALLRAFA 709 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V VT + R I KV+ + Y Q ++ Sbjct: 710 EGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGM-----QAYGLARDTGMSRQD 764 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + + + + E + G R + + Sbjct: 765 AQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGR--RRYLPEITSSNPARRQ---A 819 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + G A K + + R L R + + Sbjct: 820 AERMAVNMPLQGTAADIMKLAMIAVH----------------RPLAERGLRS-------- 855 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 ++ +VL E P+++ Sbjct: 856 ----------------------------RMLLQVHDE---LVL--------EVPESELAT 876 Query: 644 ASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + L M+ +PL+ + + Sbjct: 877 TTELVTTRMSRVVE--LSVPLEVDAKAGPNW 905 >gi|257457843|ref|ZP_05623002.1| DNA polymerase I [Treponema vincentii ATCC 35580] gi|257444556|gb|EEV19640.1| DNA polymerase I [Treponema vincentii ATCC 35580] Length = 951 Score = 319 bits (818), Expect = 8e-85, Method: Composition-based stats. Identities = 113/693 (16%), Positives = 207/693 (29%), Gaps = 161/693 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-------- 56 D ET L ++ F+ Sbjct: 376 AFDCETTGLNPLYDS----------LVGFSLSLKAGTGIYVPLKAPAPELGEQPFAVMPL 425 Query: 57 ------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPS 107 L N ++T+V HN F+ VL+ R T++ A L Sbjct: 426 AAAKKLLARLWNNKELTLVLHNGKFDYQVLRTAGVFTRAGCRLFDTMIAAWLLEPDNLSF 485 Query: 108 ALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 L+ + EA L L + K+++ + C + Y D Sbjct: 486 GLENLTEAQLGLQGL---DYKDVVPKGC-------------TFAAVSLPQATAYAAEDAD 529 Query: 167 VTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 T +++ +P + E L L + +G + ++ + Sbjct: 530 FTLQLYHVYKPALEQANLTTLFETLEMPLMPLLADMEAQGIFLKKEELAAFSEELAGTLA 589 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQA 273 + + E+ L + ++L+ LF E L T+ +T VL + Sbjct: 590 RDEAEIYKLVGHP-FNIASPKQLQEVLFTERKLPTGKKTKTGYSTDISVLEELAAIDELP 648 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R +++ + L +++GR+ + G + TGR S QN+P Sbjct: 649 AKILDYR-ASAKLKSGYADALPLLADANGRIHTSFIQTG-TATGRLSSRDPNLQNIPIRG 706 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + +R A++G KL+ AD A IE +LA + Sbjct: 707 EEGRK-------------------------IRKAFYAADGCKLISADYAQIELVILAHFS 741 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ +KAF G D++ T A FNV V D R I KV+ + Y A Sbjct: 742 QDENLVKAFRQGTDVHAATAALIFNVPVENVVPDMRRIAKVINFGVMYGMSAFRLAN--- 798 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L ++ + F ++E+ E + +G R +A + Sbjct: 799 --QLRISRTEAADFITRYFTTYSGVAAFMETLKESAAEKGFVETLMGR--RRYIRAINSR 854 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + +A + I I V Sbjct: 855 N--------QTQRAAAERIAINTPIQGSAADIVK-------------------------- 880 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + + R L R Q +S +L + DE++ Sbjct: 881 ----TAMLHVDRALKR-------------QHLSAHLL----LQVH-----------DELI 908 Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKA 665 E PD++ + +L M A +PL+ Sbjct: 909 LEAPDSEVDSVKALLKQEMEHVVKLA--VPLRV 939 >gi|255306032|ref|ZP_05350204.1| DNA polymerase I [Clostridium difficile ATCC 43255] Length = 882 Score = 319 bits (818), Expect = 8e-85, Method: Composition-based stats. Identities = 99/664 (14%), Positives = 186/664 (28%), Gaps = 142/664 (21%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 +I D + D L N ++ +N + LK N+++ Sbjct: 337 IIYIFISVDGEKIYYVD----SNEVSKLDSIFSNNEIKKYGYNLKDDYISLKPY-NINLE 391 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + + + S+ A K L + E ++K Sbjct: 392 -NMYFDITIAEYLIDSTSSTSYDCSA--------IAMKYLSKKVKSKEELLGKGVKSKNY 442 Query: 150 HREAWRLFGEYCKGDV--------TVTREIFKRLEPLSSKE--QELWYLDQTINDRGYCV 199 + EY + + R + L + + G V Sbjct: 443 EDLEFEDLAEYMGQIICTVKETVPMMERSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKV 502 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256 D ++ L+ L++E+ L+ + ++L LF + L + T+ Sbjct: 503 DKSILDELSVEFKEIIATLEKEIYELSG-EPFNINSPKQLGVILFEKLELPIIKKTKTGY 561 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL + P ++ R + + L+ +N + + + T Sbjct: 562 STNADVLEKLRDKHPIIDKITEYRQIV-KLNSTYVEGLLNIINPESNRIHSSFNQTITTT 620 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + +R IA + KL Sbjct: 621 GRISSTEPNLQNIPIKMEMGRK-------------------------IRKVFIADDNCKL 655 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V AD + +E RVLA M+ ++ ++AF+ ED++ T ++ FNV VT + R K + Sbjct: 656 VDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVN 715 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y LN+ S ++ + F E E Sbjct: 716 FGIIYGKS-----DFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYA- 769 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 I +RR +P + Sbjct: 770 ----------------------------------------VTILNRRRYIPEIKSSNFME 789 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R +N +Q + DI+ M+N Sbjct: 790 RNR---------------GKRFAMNA------------------PIQGSAADIIKIAMIN 816 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 K ++L VHDE++ E D + + M + + L + Sbjct: 817 VHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENAV--NMDVHLDVDLNV 874 Query: 670 SKRY 673 + Sbjct: 875 GSSW 878 >gi|297583657|ref|YP_003699437.1| DNA polymerase I [Bacillus selenitireducens MLS10] gi|297142114|gb|ADH98871.1| DNA polymerase I [Bacillus selenitireducens MLS10] Length = 878 Score = 319 bits (818), Expect = 8e-85, Method: Composition-based stats. Identities = 92/659 (13%), Positives = 194/659 (29%), Gaps = 137/659 (20%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-CFNLDIPIH 91 + + + + V K+ E+ I ++ RTV+ +D+ + Sbjct: 335 IGVAIANETGIYYVEAEEALTSDVFKKWAEDDQKEIYTFDAK--RTVVALGWAGIDLS-N 391 Query: 92 RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 + + S + + K I + + P Sbjct: 392 TTFDIQMASYLIDPASGSHEIADIAN--------RKNGIQVQTDEAVYGKGKKQAIPEAE 443 Query: 152 EAWRLFGEYCKGDVTV----TREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAH 205 E + G + + +E+ + ++ E+ + + G VD Sbjct: 444 ELSQHLGRKAAAILDLKKNLEQELRDNRQWELFQDLEMPLSVILGRMEANGVSVDQQELE 503 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262 T+ + + KL+Q++ + ++L LF + GL + T+ +T V Sbjct: 504 TIGKDLTERLAKLEQQIYEAAGQS-FNINSPKQLGKVLFEDLGLPVLKKTKTGYSTSADV 562 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L K + R + + L++ ++ T+ ++TGR S Sbjct: 563 LEKLKGEHDVIDHILFYRQ-LGKLNSTYIEGLLKVIHPKTGKIHTIFNQAVTQTGRLSST 621 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADL 381 QN+P + +R + G KL AD Sbjct: 622 EPNLQNIPVRLEEGRK-------------------------IRRAFVPSKPGSKLFAADY 656 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE RVLA ++ ++ + AF+ G D++ T + F V +VT + R K + + Y Sbjct: 657 SQIELRVLAHISKDENLISAFQEGMDIHTKTASDVFGVKGNEVTAEMRRTAKAVNFGIVY 716 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 + L ++ + E + + + + E Sbjct: 717 GIS-----DYGLSQNLGISRKKAQTFIDKYFESYPGVKTYMEDIVAEAREQGYV------ 765 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 + ++RR +P + + Sbjct: 766 -----------------------------------TTMLQRRRYLPDLTSRNFNQRSF-- 788 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---- 617 R+ +NT +Q + DI+ + M++ Sbjct: 789 -------------AERTAMNT------------------PIQGSAADIIKKAMVDMATEL 817 Query: 618 --TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + L +M S +PL + + Sbjct: 818 ERQNLKSVMLLQVHDELIFEVPEDEIETMEKLVKDVMESTIE--LNVPLITDMATGDTW 874 >gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599] gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599] Length = 882 Score = 319 bits (818), Expect = 9e-85, Method: Composition-based stats. Identities = 94/664 (14%), Positives = 183/664 (27%), Gaps = 145/664 (21%) Query: 31 ILFAFGFDDHPVEL-WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 + +D + + WD + + L E L + + + L + I Sbjct: 339 LGIGLATEDTVMFVPWDVAKE---WKALCEWLADPAKEKWVFDGKRDTVGLAWH-DFAIK 394 Query: 90 IHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + + + L ++ E + R Sbjct: 395 GIS-FDVYLASYLLNAAESNPTLDSIAAQY-----------AQTRVLSDEEVYGKGAKRL 442 Query: 147 KPNHREAWRLFGEYCK---GDVTVTRE-IFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200 P V V RE + + E E + + +G V+ Sbjct: 443 VPEMDVLSEHVAHKAAAIWQSVPVLREQLAENEMEKLLGELEAPLSMVLALMEKQGVKVN 502 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + + +D + L ++ L G + ++L LF L + T+ + Sbjct: 503 SERLVQMGEDLDKKLAGLTDQIYELAGGA-FNINSPKQLGEILFDRLSLPVLKKTKTGPS 561 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL P + R + + L + +++ TL + TG Sbjct: 562 TSADVLEKLAPYHPIIDAILTFRQ-LGKLRSTYIEGLTKEIHTKTSKVHTLYNQATTATG 620 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKL 376 R S QN+P + +R I +G + Sbjct: 621 RLSSTDPNLQNIPIRMEEGRK-------------------------IREAFIPSEDGWYM 655 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R+LA ++ ++ + AF+ G D++ T F V+ +VT R K + Sbjct: 656 LAADYSQIELRILAHISQDENLIDAFQKGMDIHTRTAMDVFGVSEEEVTSLMRRQAKAVN 715 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ + Sbjct: 716 F--------------GIVYGISDYGLSQ------------------------------NL 731 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + S V +E+ Q + +G Sbjct: 732 NITRKEAGDFIERYFDVFSGVKRWMDEIVQQAK---ADGHVTTLLN-------------- 774 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R D+ ++ R +Q + D++ M+ Sbjct: 775 ---------RRRYLPDIRSSNF---NLRSFAERTAMNTP------IQGTAADVIKLAMIR 816 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 +A ++L VHDE+V E PD + L +M S S +PLK + + Sbjct: 817 MQEALEEKGLASRMLLQVHDELVFEVPDNELEVMRKLVPEVMESALS--LDVPLKVDVSD 874 Query: 670 SKRY 673 + + Sbjct: 875 GRTW 878 >gi|254974662|ref|ZP_05271134.1| DNA polymerase I [Clostridium difficile QCD-66c26] gi|255092051|ref|ZP_05321529.1| DNA polymerase I [Clostridium difficile CIP 107932] gi|255313787|ref|ZP_05355370.1| DNA polymerase I [Clostridium difficile QCD-76w55] gi|255649569|ref|ZP_05396471.1| DNA polymerase I [Clostridium difficile QCD-37x79] gi|260682732|ref|YP_003214017.1| DNA polymerase I [Clostridium difficile CD196] gi|260686330|ref|YP_003217463.1| DNA polymerase I [Clostridium difficile R20291] gi|306519696|ref|ZP_07406043.1| DNA polymerase I [Clostridium difficile QCD-32g58] gi|260208895|emb|CBA61872.1| DNA polymerase I [Clostridium difficile CD196] gi|260212346|emb|CBE03147.1| DNA polymerase I [Clostridium difficile R20291] Length = 882 Score = 319 bits (818), Expect = 9e-85, Method: Composition-based stats. Identities = 99/664 (14%), Positives = 186/664 (28%), Gaps = 142/664 (21%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 +I D + D L N ++ +N + LK N+++ Sbjct: 337 IIYIFISVDGEKIYYVD----SNEVSKLDSIFSNNEIKKYGYNLKDDYISLKPY-NINLE 391 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + + + S+ A K L + E ++K Sbjct: 392 -NMYFDITIAEYLIDSTSSTSYDCSA--------IAMKYLSKKVKSKEELLGKGVKSKNY 442 Query: 150 HREAWRLFGEYCKGDV--------TVTREIFKRLEPLSSKE--QELWYLDQTINDRGYCV 199 + EY + + R + L + + G V Sbjct: 443 EDLEFEDLAEYMGQIICTVKETIPMMERSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKV 502 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256 D ++ L+ L++E+ L+ + ++L LF + L + T+ Sbjct: 503 DKSILDELSVEFKEIIATLEKEIYELSG-EPFNINSPKQLGVILFEKLELPIIKKTKTGY 561 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL + P ++ R + + L+ +N + + + T Sbjct: 562 STNADVLEKLRDKHPIIDKITEYRQIV-KLNSTYVEGLLNIINPESNRIHSSFNQTITTT 620 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + +R IA + KL Sbjct: 621 GRISSTEPNLQNIPIKMEMGRK-------------------------IRKVFIADDNCKL 655 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V AD + +E RVLA M+ ++ ++AF+ ED++ T ++ FNV VT + R K + Sbjct: 656 VDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVN 715 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y LN+ S ++ + F E E Sbjct: 716 FGIIYGKS-----DFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYA- 769 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 I +RR +P + Sbjct: 770 ----------------------------------------VTILNRRRYIPEIKSSNFME 789 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R +N +Q + DI+ M+N Sbjct: 790 RNR---------------GKRFAMNA------------------PIQGSAADIIKIAMIN 816 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 K ++L VHDE++ E D + + M + + L + Sbjct: 817 VHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENAV--NMDVHLDVDLNV 874 Query: 670 SKRY 673 + Sbjct: 875 GSSW 878 >gi|218288809|ref|ZP_03493072.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1] gi|218241167|gb|EED08343.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1] Length = 974 Score = 319 bits (818), Expect = 9e-85, Method: Composition-based stats. Identities = 94/661 (14%), Positives = 184/661 (27%), Gaps = 145/661 (21%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERTVLKACF-- 84 + A + ++ L + D VA F+ + Sbjct: 440 AEIRGMAVAA-PKRAYYV--RFGERLELSDVRPWLVS-DRPKVA----FDLKSMAFALDA 491 Query: 85 -NLDIPIH-RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 + + W + A GE E G+EL + + Sbjct: 492 HGIGLTSECGWQDVKLAAYLLNP-----QDGEVELSDVFARELGQEL------PTFDDGV 540 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 ++ E T + + E L ++ + G+ V+ Sbjct: 541 REKWLAYTASQLPPLFESLA----YTIRMQEMERLYQEVELPLAFVLAKMEITGFYVNRE 596 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 Q + T++ QE+ L + ++L LF + GL T+ +T Sbjct: 597 KLVAFGQELTERITRITQEIYDLAGTS-FNLNSPKQLGEILFDKLGLPALKKTKTGYSTS 655 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + ++ + R+ ++ + L++ + + T + TGR Sbjct: 656 ADVLEKLAPMHEIVQKILDYRL-LAKLQSTYVEGLLKVIRKETGRVHTRFHQTLTATGRL 714 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+P L ++ + + A Sbjct: 715 SSSEPNLQNIPIRLEEGRRLRRVFEPTY------------------------KDWVIFAA 750 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R+LA ++G++ + AF D++ T A F V P QVT R K + Sbjct: 751 DYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNF-- 808 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 G++ A Sbjct: 809 ------------GIVYGISDFGLAQ------------------------------NLNIP 826 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 +R +++ +K V +E+ +Q E G Sbjct: 827 QKEAKRFIESYFEKFPGVKRYMDEI---VKQARERGYVTTLMN----------------- 866 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 R D+ + R +Q + D++ M+ + Sbjct: 867 ------RRRYLPDIHSRN---YQLRSFAERTAMNTP------IQGSAADLIKLAMVRIDR 911 Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKR 672 A ++L VHDE++ E P+ + +L M + + +PLK + Sbjct: 912 AMRDAQMDARMLLQVHDELIFECPNDELAALEVLVRDNMENAMT--LSVPLKVDTAYGPT 969 Query: 673 Y 673 + Sbjct: 970 W 970 >gi|126698722|ref|YP_001087619.1| DNA polymerase I [Clostridium difficile 630] gi|255100142|ref|ZP_05329119.1| DNA polymerase I [Clostridium difficile QCD-63q42] gi|115250159|emb|CAJ67980.1| DNA polymerase I (POLI) [Clostridium difficile] Length = 882 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 99/664 (14%), Positives = 186/664 (28%), Gaps = 142/664 (21%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 +I D + D L N ++ +N + LK N+++ Sbjct: 337 IIYIFISVDGEKIYYVD----SNEVSKLDSIFSNNEIKKYGYNLKDDYISLKPY-NINLE 391 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + + + S+ A K L + E ++K Sbjct: 392 -NMYFDITIAEYLIDSTSSTSYDCSA--------IAMKYLSKKVKSKEELLGKGVKSKNY 442 Query: 150 HREAWRLFGEYCKGDV--------TVTREIFKRLEPLSSKE--QELWYLDQTINDRGYCV 199 + EY + + R + L + + G V Sbjct: 443 EDLEFEDLAEYMGQIICTVKETVPMMERSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKV 502 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256 D ++ L+ L++E+ L+ + ++L LF + L + T+ Sbjct: 503 DKSILDELSVEFKEIIATLEKEIYELSG-EPFNINSPKQLGVILFEKLELPIIKKTKTGY 561 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL + P ++ R + + L+ +N + + + T Sbjct: 562 STNADVLEKLRDKHPIIDKITEYRQIV-KLNSTYVEGLLNIINPESNRIHSSFNQTITTT 620 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + +R IA + KL Sbjct: 621 GRISSTEPNLQNIPIKMEMGRK-------------------------IRKVFIADDNCKL 655 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V AD + +E RVLA M+ ++ ++AF+ ED++ T ++ FNV VT + R K + Sbjct: 656 VDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVN 715 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y LN+ S ++ + F E E Sbjct: 716 FGIIYGKS-----DFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYA- 769 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 I +RR +P + Sbjct: 770 ----------------------------------------VTILNRRRYIPEIKSSNFME 789 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R +N +Q + DI+ M+N Sbjct: 790 RNR---------------GKRFAMNA------------------PIQGSAADIIKIAMIN 816 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 K ++L VHDE++ E D + + M + + L + Sbjct: 817 VHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENAV--NMDVHLDVDLNV 874 Query: 670 SKRY 673 + Sbjct: 875 GSSW 878 >gi|242242956|ref|ZP_04797401.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144] gi|242233557|gb|EES35869.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144] Length = 876 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 97/663 (14%), Positives = 194/663 (29%), Gaps = 131/663 (19%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81 Y +D ++ F F + V + D + L LE+ + T + +++ + V Sbjct: 328 YLKDA-ILKFGFYTNHQHVVI--NADDVKNYKNLVRWLEDKNTTKIVYDAKKTY---VSA 381 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 ++I ++ + ++ V + L Q K+ I F KG+ H Sbjct: 382 HRLGINIENIE-FDVMLASYIIDPSRSIDDVKSVVGLYGQNYV--KDNITVFGKGKKHHI 438 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 + H + + E + ++E L E L + + + G D+ Sbjct: 439 PEESILNEHIASVTEAISAVTPIMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDI 498 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 + + + L + + G + ++L LF L + T+ +T Sbjct: 499 NDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGYST 557 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + P + R S+ + L + ++ D R+ A +TGR Sbjct: 558 AVDVLEKLQGEHPIIDDILEYRQ-LSKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGR 615 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLV 377 S QN+P + +R S+ ++ Sbjct: 616 LSSVDPNLQNIPIRLEEGRK-------------------------IRKAFKPTSKDSVIL 650 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA + ++ AF G D++ T + FNV QV R K + Sbjct: 651 SADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF 710 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 G++ + Sbjct: 711 --------------GIVYGISDYGLSQ------------------------------SLG 726 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + V + +++ + G Sbjct: 727 ITRKKAKAFIDDYLASFPGVKQYMSDI---VKDAKAQGYVETLLH--------------- 768 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R D+ + R +Q + DI+ M+ Sbjct: 769 --------RRRYIPDITSRNF---NLRSFAERTAMNTP------IQGSAADIIKLAMVKF 811 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670 ++ ++L VHDE++ E P ++ + S + +M +PLK + Sbjct: 812 SEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYG 869 Query: 671 KRY 673 + Sbjct: 870 ATW 872 >gi|307266790|ref|ZP_07548314.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918183|gb|EFN48433.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1] Length = 561 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 94/680 (13%), Positives = 197/680 (28%), Gaps = 146/680 (21%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74 D + + AF F + V D + LKE E + H Sbjct: 3 DSRNIAFYPLIYEGEIKKIAFSFGEDTV-YIDVFQ----IEDLKEIFEKEEFEFTTHEIK 57 Query: 75 FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134 + V + ++ ++I T ++A + + LK K L Sbjct: 58 -DFLVKLSYKGIECK-SKYIDTAIMAYLLNPSESNYDLDRVLK---------KYLKVDVP 106 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL----------SSKEQE 184 E K + +Y ++ ++L E Sbjct: 107 SYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLREKLMNFIEEMDMKKLLLEIEMP 166 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + + G+ +D + L+Q +D ++ ++ + ++L +LF Sbjct: 167 LVEVLKLMEVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEAGYQ-FNVNSPKQLSEFLF 225 Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + L + T+ +T VL + R ++ ++ + M+ + Sbjct: 226 EKLNLPVIKKTKTGYSTDSEVLEQLVPYNDVVSDIIEYRQ-LTKLKSTYIDGFLPLMDEN 284 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 R+ + + + TGR S QN+P Sbjct: 285 NRVHSNFKQMV-TATGRISSTEPNLQNIPIREEFGR------------------------ 319 Query: 362 DCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R I + +V AD + IE RVLA ++G++ +++F ED+++ T A F V Sbjct: 320 -QIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVP 378 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 +VT + R K + G++ + Sbjct: 379 MEKVTPEMRRAAKAVNF--------------GIIYGISDYGLS----------------- 407 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + + + +++ V E ++ + ++ Sbjct: 408 -------------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKE---------- 444 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 N + R ++ + T Q R Sbjct: 445 ----------------NGYVTTIMNRRRYIPEINSRNF---TQRSQAERLAMNAP----- 480 Query: 601 IVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTS 653 +Q + DI+ M+ + ++L VHDE+V +T + + M + Sbjct: 481 -IQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHDELVVDTYKDEVEIVKKILKENMEN 539 Query: 654 NPSWAKGLPLKAEGYESKRY 673 +PL E + Sbjct: 540 VIK--LKVPLVVEIGIGPNW 557 >gi|323440766|gb|EGA98475.1| DNA polymerase I [Staphylococcus aureus O11] gi|323442921|gb|EGB00544.1| DNA polymerase I [Staphylococcus aureus O46] Length = 876 Score = 318 bits (816), Expect = 2e-84, Method: Composition-based stats. Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59 ET S ++ + + A + F + D L Sbjct: 302 IET-SFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360 Query: 60 ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 LEN + V +++ + V +DI ++ + + V + Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L Q K+ ++ + KG+ + D + + + K ++ E + ++E Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + + G DV + + + + L + + + + Sbjct: 475 LADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF L + T+ +T VL + P + R S+ + L Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ D R+ A +TGR S QN+P + Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635 Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S+ ++ AD + IE RVLA + ++ +AF G+D++ T Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V QV R K + + Y + L + + Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + ++ + Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +RR +P + + R+ +NT Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646 +Q + DI+ M+ + ++L VHDE++ E P ++ + S Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + +PLK + + Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872 >gi|253734526|ref|ZP_04868691.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130] gi|253727467|gb|EES96196.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130] Length = 876 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59 ET S ++ + + A + F + D L Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVS 360 Query: 60 ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 LEN + V +++ + V +DI ++ + + V + Sbjct: 361 WLENPNSKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L Q K+ ++ + KG+ + D + + + K ++ E + ++E Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + + G DV + + + + L + + + + Sbjct: 475 LADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF L + T+ +T VL + P + R S+ + L Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ D R+ A +TGR S QN+P + Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635 Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S+ ++ AD + IE RVLA + ++ +AF G+D++ T Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V QV R K + + Y + L + + Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + ++ + Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +RR +P + + R+ +NT Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646 +Q + DI+ M+ + ++L VHDE++ E P ++ + S Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + +PLK + + Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872 >gi|283470957|emb|CAQ50168.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus ST398] Length = 876 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 99/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59 ET S ++ + + A + F + D L Sbjct: 302 IET-SFDNVDFTSLEEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360 Query: 60 ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 LEN + V +++ + V +DI ++ + + V + Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L Q K+ ++ + KG+ + D + + K ++ E + ++E Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVAFITDAIYFAKPNMDKQLEEYNQVEL 474 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + + G DV + + + + L + + + + Sbjct: 475 LADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF L + T+ +T VL + P + R S+ + L Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ D R+ A +TGR S QN+P + Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635 Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S+ ++ AD + IE RVLA + ++ +AF G+D++ T Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V QV R K + + Y + L + V + Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKVFIDDYLA 741 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + ++ + Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +RR +P + + R+ +NT Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646 +Q + DI+ M+ + ++L VHDE++ E P ++ + S Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + +PLK + + Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872 >gi|167464951|ref|ZP_02330040.1| DNA polymerase I [Paenibacillus larvae subsp. larvae BRL-230010] Length = 884 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 88/671 (13%), Positives = 178/671 (26%), Gaps = 147/671 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERT----VL 80 + +D + + + +++ L + D F++ L Sbjct: 334 HHSDIAGLGL-YDGNKGYFLAFETLQSVNAEPIRQWLSDADKEKWI----FDKHRAQLAL 388 Query: 81 KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 + + L+ + + + GK +A E Sbjct: 389 SW-KGIKLRGVS-FDVLLASYLLDPTESTLTLSGV---------AGKYSVASLPADEQVF 437 Query: 141 CLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTIN 193 + P + + + +LE E L + + Sbjct: 438 GKGAKFKLPEEHLLGENLSLKAERVSRLVPVLKAKLEESGMQELYYELEHPLAGVLAEME 497 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G VD L + + + + + ++L LF + L ++ Sbjct: 498 LAGIKVDKESLKQLGTEISDQLKTIMDRIYEQAGMT-FNINSPKQLGEVLFEKLQLPVQK 556 Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+ +T VL + + R ++ + L++ + D T Sbjct: 557 KTKTGYSTDAEVLEKLAPYHDIVGDILHYR-TLAKLQSTYVEGLLKEVRPDTGKVHTYYR 615 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 + TGR S QN+P + +R + Sbjct: 616 QTIAATGRLSSQYPNLQNIPIRLEEGRK-------------------------IRKVFVP 650 Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 G ++ AD + IE RVLA ++G++ +AF D++ T F V+ A+V + R Sbjct: 651 SKPGWHILAADYSQIELRVLAHISGDEKLKEAFVKDMDIHTKTAMDVFGVSEAEVDANMR 710 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y + L + + N+ + Sbjct: 711 RSAKAVNFGIVYGIS-----DYGLSQNLGITRKEASRFIEQYFSVFRGVRNYMDSIIREA 765 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 ++RR +P + Sbjct: 766 KTQGYVTTL-----------------------------------------LQRRRYLPEI 784 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 R+ +NT +Q + DI Sbjct: 785 NASNYNLRSF---------------AERTAMNTP------------------IQGTAADI 811 Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + M+ K ++L VHDE++ E P+ + L +M A +P Sbjct: 812 IKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVPEVMEQA--LALDVP 869 Query: 663 LKAEGYESKRY 673 LK E E + + Sbjct: 870 LKVEVDEGENW 880 >gi|258424106|ref|ZP_05686988.1| DNA polymerase I [Staphylococcus aureus A9635] gi|257845727|gb|EEV69759.1| DNA polymerase I [Staphylococcus aureus A9635] Length = 876 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59 ET S ++ + + A + F + D L Sbjct: 302 IET-SFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360 Query: 60 ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 LEN + V +++ + V +DI ++ + + V + Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L Q K+ ++ + KG+ + D + + + K ++ E + ++E Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + + G DV + + + + L + + + + Sbjct: 475 LADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF L + T+ +T VL + P + R S+ + L Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ D R+ A +TGR S QN+P + Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635 Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S+ ++ AD + IE RVLA + ++ +AF G+D++ T Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V QV R K + + Y + L + + Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + ++ + Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +RR +P + + R+ +NT Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646 +Q + DI+ M+ + ++L VHDE++ E P ++ + S Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + +PLK + + Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872 >gi|289434845|ref|YP_003464717.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171089|emb|CBH27631.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 875 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 84/662 (12%), Positives = 182/662 (27%), Gaps = 144/662 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89 + KE +E+ +V ++ V + Sbjct: 333 IGLTIHSDKGTYFFTKETAENSPAFKEWIESDASKVV-----YDAKKTMVAMHRLGYAVS 387 Query: 90 IHRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 ++ + ++ V + + +E A + KG +R Sbjct: 388 GIT-FDIMLASYLLNPSDSIADFTSVAIRHDYTEVETDE-----AVYGKGAKRSTPEERV 441 Query: 147 KPNH----REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 H A + + D+ ++ + E L ++ + +G VD Sbjct: 442 VAPHLARKAVAIAVLEKRLLDDLEKNEQLAL----MEDLELPLTFVLAQMEMQGVSVDTK 497 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + L++ + SL + ++L LF + GL T+ +T Sbjct: 498 RLEDMKVELAGRLKTLEESIHSLAG-EEFNINSPKQLGVILFEKLGLPAVKKTKTGYSTA 556 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL S ++ R + + L++ + + T ++TGR Sbjct: 557 ADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRL 615 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVV 378 S QN+P + +R + S G K+ Sbjct: 616 SSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSQPGWKIFS 650 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + +E RVLA ++ ++ + AF+ D++ T F+V +V R K + Sbjct: 651 ADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVN-- 708 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ + Sbjct: 709 ------------FGIVYGISDYGLSQ------------------------------NLGI 726 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + + + V E ++ + ++ + I Sbjct: 727 TRKDAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH----------------- 767 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617 R ++ + R +Q + DI+ + M+ Sbjct: 768 -------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMS 811 Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 K ++L VHDE++ E P+ + + +M + +PLK + Sbjct: 812 DRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGD 869 Query: 672 RY 673 + Sbjct: 870 TW 871 >gi|298694960|gb|ADI98182.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED133] Length = 876 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 97/687 (14%), Positives = 204/687 (29%), Gaps = 137/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59 ET S ++ + + + F + D L Sbjct: 302 IET-SFDNVDFTSLKEAVIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360 Query: 60 ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 LEN + V +++ + V +DI ++ + + V + Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L Q K+ ++ + KG+ + D + + + K ++ E + ++E Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + + G DV + + + + L + + + + Sbjct: 475 LADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF L + T+ +T VL + P + R S+ + L Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ D R+ A +TGR S QN+P + Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635 Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S+ ++ AD + IE RVLA + ++ +AF G+D++ T Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V QV R K + + Y + L + + Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + ++ + Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +RR +P + + R+ +NT Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646 +Q + DI+ M+ + ++L VHDE++ E P ++ + S Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + +PLK + + Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872 >gi|322382878|ref|ZP_08056713.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153147|gb|EFX45602.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 908 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 88/671 (13%), Positives = 178/671 (26%), Gaps = 147/671 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERT----VL 80 + +D + + + +++ L + D F++ L Sbjct: 358 HHSDIAGLGL-YDGNKGYFLAFETLQSVNAEPIRQWLSDADKEKWI----FDKHRAQLAL 412 Query: 81 KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 + + L+ + + + GK +A E Sbjct: 413 SW-KGIKLRGVS-FDVLLASYLLDPTESTLTLSGV---------AGKYSVASLPADEQVF 461 Query: 141 CLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTIN 193 + P + + + +LE E L + + Sbjct: 462 GKGAKFKLPEEHLLGENLSLKAERVSRLVPVLKAKLEESGMQELYYELEHPLAGVLAEME 521 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G VD L + + + + + ++L LF + L ++ Sbjct: 522 LAGIKVDKESLKQLGTEISDQLKTIMDRIYEQAGMT-FNINSPKQLGEVLFEKLQLPVQK 580 Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+ +T VL + + R ++ + L++ + D T Sbjct: 581 KTKTGYSTDAEVLEKLAPYHDIVGDILHYR-TLAKLQSTYVEGLLKEVRPDTGKVHTYYR 639 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 + TGR S QN+P + +R + Sbjct: 640 QTIAATGRLSSQYPNLQNIPIRLEEGRK-------------------------IRKVFVP 674 Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 G ++ AD + IE RVLA ++G++ +AF D++ T F V+ A+V + R Sbjct: 675 SKPGWHILAADYSQIELRVLAHISGDEKLKEAFVKDMDIHTKTAMDVFGVSEAEVDANMR 734 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y + L + + N+ + Sbjct: 735 RSAKAVNFGIVYGIS-----DYGLSQNLGITRKEASRFIEQYFSVFRGVRNYMDSIIREA 789 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 ++RR +P + Sbjct: 790 KTQGYVTTL-----------------------------------------LQRRRYLPEI 808 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 R+ +NT +Q + DI Sbjct: 809 NASNYNLRSF---------------AERTAMNTP------------------IQGTAADI 835 Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + M+ K ++L VHDE++ E P+ + L +M A +P Sbjct: 836 IKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVPEVMEQA--LALDVP 893 Query: 663 LKAEGYESKRY 673 LK E E + + Sbjct: 894 LKVEVDEGENW 904 >gi|315303334|ref|ZP_07873960.1| DNA polymerase I [Listeria ivanovii FSL F6-596] gi|313628295|gb|EFR96802.1| DNA polymerase I [Listeria ivanovii FSL F6-596] Length = 875 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 80/657 (12%), Positives = 183/657 (27%), Gaps = 134/657 (20%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89 + KE +E+ +V ++ + + Sbjct: 333 IGLTIHSDKGTYFFAKETAENSPAFKEWIESDASKVV-----YDAKKAMIAMHRLGYAVS 387 Query: 90 IHRWICTLVLARSNGLPSALKA-VGEALKLSSQKMEEGKELIARFCK-GETHECLYDRNK 147 ++ + ++ A++ ++E + + + K E + + Sbjct: 388 GIT-FDIMLASYLLNPSDSIDDFTSVAIRHDYTEVETDEAVYGKGAKRSTPEESVVAPHL 446 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 A + + D+ ++ + E L ++ + +G VD + Sbjct: 447 ARKAVAIAILEKRLLDDLEKNEQLAL----MEDLELPLTFVLAQMEMQGVSVDTKRLEDM 502 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 + L++ + SL + ++L LF + GL T+ +T VL Sbjct: 503 KVELAGRLKTLEESIHSL-AEEEFNINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLE 561 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 S ++ R + + L++ + + T ++TGR S Sbjct: 562 SLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDP 620 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAG 383 QN+P + +R + S G K+ AD + Sbjct: 621 NLQNIPIRLEEGRK-------------------------IRQVFVPSQPGWKIFSADYSQ 655 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 +E RVLA ++ ++ + AF+ D++ T F+V +V R K + Sbjct: 656 VELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVN------- 708 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G++ + Sbjct: 709 -------FGIVYGISDYGLSQ------------------------------NLGITRKDA 731 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + V E ++ + ++ + I Sbjct: 732 KDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH---------------------- 767 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------ 617 R ++ + R +Q + DI+ + M+ Sbjct: 768 --RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMSDRLKS 816 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 K ++L VHDE++ E P+ + + +M + +PLK + + Sbjct: 817 EKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871 >gi|21283362|ref|NP_646450.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2] gi|49486516|ref|YP_043737.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476] gi|57650561|ref|YP_186574.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL] gi|87161466|ref|YP_494331.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195497|ref|YP_500301.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221795|ref|YP_001332617.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman] gi|161509904|ref|YP_001575563.1| DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142560|ref|ZP_03567053.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253732341|ref|ZP_04866506.1| DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|258451796|ref|ZP_05699818.1| DNA polymerase I [Staphylococcus aureus A5948] gi|262052261|ref|ZP_06024466.1| DNA polymerase I [Staphylococcus aureus 930918-3] gi|282920230|ref|ZP_06327955.1| DNA polymerase I [Staphylococcus aureus A9765] gi|284024738|ref|ZP_06379136.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp. aureus 132] gi|294848711|ref|ZP_06789457.1| DNA polymerase I [Staphylococcus aureus A9754] gi|297207597|ref|ZP_06924032.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911679|ref|ZP_07129123.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus TCH70] gi|304380719|ref|ZP_07363388.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|6110605|gb|AAF03894.1|AF193842_1 DNA polymerase I [Staphylococcus aureus] gi|21204802|dbj|BAB95498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2] gi|49244959|emb|CAG43420.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476] gi|57284747|gb|AAW36841.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL] gi|87127440|gb|ABD21954.1| DNA polymerase I superfamily [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203055|gb|ABD30865.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374595|dbj|BAF67855.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman] gi|160368713|gb|ABX29684.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253723863|gb|EES92592.1| DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257860508|gb|EEV83334.1| DNA polymerase I [Staphylococcus aureus A5948] gi|259159862|gb|EEW44901.1| DNA polymerase I [Staphylococcus aureus 930918-3] gi|269941170|emb|CBI49557.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TW20] gi|282594578|gb|EFB99563.1| DNA polymerase I [Staphylococcus aureus A9765] gi|294824737|gb|EFG41160.1| DNA polymerase I [Staphylococcus aureus A9754] gi|296887614|gb|EFH26512.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887100|gb|EFK82301.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus TCH70] gi|302751516|gb|ADL65693.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340718|gb|EFM06649.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198613|gb|EFU28941.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus CGS01] gi|320140432|gb|EFW32286.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143970|gb|EFW35739.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA177] gi|329314362|gb|AEB88775.1| DNA polymerase I [Staphylococcus aureus subsp. aureus T0131] gi|329728334|gb|EGG64771.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21189] Length = 876 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59 ET S ++ + + A + F + D L Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVS 360 Query: 60 ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 LEN + V +++ + V +DI ++ + + V + Sbjct: 361 WLENPNSKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L Q K+ ++ + KG+ + D + + + K ++ E + ++E Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + + G DV + + + + L + + + + Sbjct: 475 LADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF L + T+ +T VL + P + R S+ + L Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ D R+ A +TGR S QN+P + Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635 Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S+ ++ AD + IE RVLA + ++ +AF G+D++ T Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V QV R K + + Y + L + + Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + ++ + Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +RR +P + + R+ +NT Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646 +Q + DI+ M+ + ++L VHDE++ E P ++ + S Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + +PLK + + Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872 >gi|309791689|ref|ZP_07686181.1| DNA polymerase I [Oscillochloris trichoides DG6] gi|308226311|gb|EFO80047.1| DNA polymerase I [Oscillochloris trichoides DG6] Length = 951 Score = 318 bits (814), Expect = 3e-84, Method: Composition-based stats. Identities = 105/707 (14%), Positives = 201/707 (28%), Gaps = 163/707 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-------VMPQVL 57 D E G+ +A + + C H + L Sbjct: 366 AFDTE--------ASGLRPFAS--QLCGISLALSPGSAVYVPCGHSSGAQLSLAEVVAAL 415 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEAL 116 + + AHN+ F+ +L + I + T++ A G + LK + Sbjct: 416 GPFFADPNKAKYAHNAKFDIEML---LGVGIEVQGLAFDTMIAAALLGKRAGLKDLAFYE 472 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 M ++LI + + Y D +T + LE Sbjct: 473 LQLPDPMTPIEDLI----------GRGTKQISFAQVPIERATPYAAADADMTLRLVHALE 522 Query: 177 PLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P + E L ++ + G +D L Q + ++QE+ + Sbjct: 523 PQLATTPKLHDLYRRLELPLVHVLVQMEQAGIALDKPYIEYLGQRMGTRIAAIEQEIYQI 582 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-------HLEDLTETTCQRVLSSNKKLT--PQAIQV 276 G + ++L LF + GL + + L ++ ++ Sbjct: 583 AEGP-FNINSSDQLSDILFGKIGLSTEGVERTAKTKKYSITADTLERLRERDTSGICERI 641 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R S+ ++ L +N GR+ T +GA+ TGR S QN+P ++ Sbjct: 642 LEYRR-LSKLKSTYVDALPALVNPRTGRVHTTYNQVGAA-TGRLSSNDPNLQNIPVRTQE 699 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 E +R +A+ G + + AD + IE RVLA++ + Sbjct: 700 GRE-------------------------IRRGFVAAPGHRFIAADYSQIELRVLAYITKD 734 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 ++AF+ G+D++ T A+ F VA QV K+QR I K + + Y A Sbjct: 735 PNLVRAFQEGQDIHAATAAQLFGVAIDQVDKEQRRIAKTVVFGVIYGISA-----FGLAQ 789 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + NS + ++ E + G + Sbjct: 790 RTEMGRSEAQDLINSLFTRFPGIRDYINRTLEQGQTTGVVQTIFGRQ---------RAMP 840 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + A + I A + ++ Sbjct: 841 ELQSRGPRRAAAEREAINAPIQGTAADIMKIAMIK------------------------- 875 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 + + R ++ ++ E Sbjct: 876 ---MARALSERGLRTRL---------------------LLQVHDE-----------LILE 900 Query: 636 TPDTDEFNASMLY-HLMTSNPSWA----KG----LPLKAEGYESKRY 673 P+ + + L +M S A +G +PL + + Sbjct: 901 APEEEVALVAELVREVMAGAYSLAWHDQEGQSHHVPLGVDVEIGPNW 947 >gi|237751826|ref|ZP_04582306.1| DNA polymerase I [Helicobacter bilis ATCC 43879] gi|229373192|gb|EEO23583.1| DNA polymerase I [Helicobacter bilis ATCC 43879] Length = 1102 Score = 318 bits (814), Expect = 3e-84, Method: Composition-based stats. Identities = 92/745 (12%), Positives = 189/745 (25%), Gaps = 212/745 (28%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------ 51 + D ET + ++ F+F FD +H Sbjct: 491 VAFDCETNGLD----------VREADMVGFSFCFDGLHAYYVPFLHGGIKREKSKYEVMK 540 Query: 52 ------------------------------------VMPQVL-----KEALENT-DVTIV 69 P + K+ALE ++ Sbjct: 541 SQSISQNLFSTEEAKPTFSLFDDTTMSKDSADNDTTNAPAQISQSDAKKALEILFSYPLI 600 Query: 70 AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGK 127 HN F+ + F + +++LA + + L + K Sbjct: 601 GHNIKFDLHIAWHNFGIKPKHTP-QDSMLLAWLDDPSQSVSLDNL--------MKKHFNH 651 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ---- 183 +IA + Y D T +++ + Sbjct: 652 NMIAFSDIVPKKA-------TFDSIDIKTASNYAAEDAAATFQLYFYFKNTLYPHLFTLA 704 Query: 184 -----ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + D G ++ + L +L QE+ + ++ Sbjct: 705 KDLEFPFIRTLCAMEDCGIAINYSYFKNLKTTFSHTLQQLQQEIYEKAGVS-FNLNSPKQ 763 Query: 239 LKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + LF L + ++ T + L + K P + R + + ++ Sbjct: 764 VAEILFDTLKLDTKRKGKSGYSTDEATLLALKDSHPVVPLLLEYR-EIFKLFSTYIEPIL 822 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + ++ R+ T G + TGR S QN+P S Sbjct: 823 KLGKNENRIYTTFLQTG-TNTGRLSSKSPNLQNIPVRSEMGR------------------ 863 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R ++ +G KL+ D + IE R+LA +G++ L++F D++ T Sbjct: 864 -------SIRKGFVSRDGYKLLSLDYSQIELRLLAHFSGDKVLLESFHNNADIHAETAKL 916 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F + R+I K + L Y Sbjct: 917 LF-KDSNKDFSLLRSIAKSINFGLIYGM-------------------------------- 943 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + + T ++ + + V + + + Sbjct: 944 ------------GARKLSQTLNITQTEAKQYIEDYFATFPSVKQFLESQKDSILK--NGY 989 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 + + ++R + L Sbjct: 990 SSTLLGRKRYFDFFSATEFMRANFLR---------------------------------- 1015 Query: 596 KLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLY 648 + I Q + D++ M K ++L VHDE++ E D+ + L Sbjct: 1016 EGVNTIFQGSAADLIKLSMNEIYKKIESLDNDCFMLLQVHDELIFEIKDSIIESLSKELK 1075 Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673 +M + + +PL + Sbjct: 1076 EIMENI--YKLKVPLVCNLSIGNTW 1098 >gi|329733163|gb|EGG69500.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21193] Length = 876 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59 ET S ++ + + A + F + D L Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVS 360 Query: 60 ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 LEN + V +++ + V +DI ++ + + V + Sbjct: 361 WLENPNSKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L Q K+ ++ + KG+ + D + + + K ++ E + ++E Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + + G DV + + + + L + + + + Sbjct: 475 LADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF L + T+ +T VL + P + R S+ + L Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ D R+ A +TGR S QN+P + Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635 Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S+ ++ AD + IE RVLA + ++ +AF G+D++ T Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V QV R K + + Y + L + + Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + ++ + Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +RR +P + + R+ +NT Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646 +Q + DI+ M+ + ++L VHDE++ E P ++ + S Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + +PLK + + Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872 >gi|325479001|gb|EGC82102.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13] Length = 878 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 96/660 (14%), Positives = 198/660 (30%), Gaps = 142/660 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A P + D +KE E+ + + + + +L +D + Sbjct: 336 IAIKTKKSPTYI--AEPDEDFVTNMKEIFEDEKILKNSFDIKEDLVLLAK-LGIDGAL-P 391 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 + +++ + + K L E + Sbjct: 392 YDDIMLMHYLIDPSRSSYDM---------KTLSQSYLDYEVNNPEDLLGKGKKALKYEDL 442 Query: 153 AWRLFGE---------YCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 + G Y D V + + E EL + + G+ D Sbjct: 443 DFDKLGNFMASEINAIYDAKDKLVDKLNEYHMYDLYKEIEIELSKVLADMEIVGFVTDRK 502 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + L + +D + +L QE+ L+ + ++L LF + L + T+ +T Sbjct: 503 VLEELKEGIDADIDELTQEIYELSGS-EFNINSTKQLGEVLFKDLELPVIKKTKTGFSTD 561 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + ++ R + + L +A++ DGR+R T + A+ TGR Sbjct: 562 ASVLEKLRDKHQIIPKIERYR-ELFKLRSTYIEGLEKAIDYDGRIRSTFRQNIAA-TGRL 619 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QNLP + +R A EGK L+ A Sbjct: 620 SSQDPNLQNLPIKTDEGR-------------------------LIRKAFKAEEGKILIDA 654 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R+LA ++G++ + AF +D++ T ++ F+ +VTK QR+ K + + Sbjct: 655 DYSQIELRILASLSGDEHMIDAFINVDDIHRKTASKVFHTPLEEVTKRQRSEAKAVNFGI 714 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 G++ + Sbjct: 715 I--------------YGISDYGLSQ------------------------------NLNIS 730 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + + + E + + + ++ + Sbjct: 731 RKEAKEYIDNYMASYPSIKEYMDSIVEKAKE--------------------------DGY 764 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM---- 615 + R ++ + + + ++ +Q + DI+ M+ Sbjct: 765 VETLFKRRRYVPEINSRNFNVRSFGQR---------VALNTPIQGTAADIIKIAMIETYK 815 Query: 616 --NATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672 K I+L +HDEI+ E + ++ +L M S +PL + Sbjct: 816 NLKKEKIDAKIILQIHDEIILEASKEDEDRAIEILRESMESAA--NLEVPLIVDIDTGDS 873 >gi|82751278|ref|YP_417019.1| DNA polymerase I [Staphylococcus aureus RF122] gi|82656809|emb|CAI81238.1| DNA polymerase I [Staphylococcus aureus RF122] Length = 876 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59 ET S ++ + + A + F + D L Sbjct: 302 IET-SFDNVDFTSLKEAAIHFELHGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360 Query: 60 ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 LEN + V +++ + V +DI ++ + + V + Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L Q K+ ++ + KG+ + D + + + K ++ E + ++E Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + + G DV + + + + L + + + + Sbjct: 475 LADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF L + T+ +T VL + P + R S+ + L Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ D R+ A +TGR S QN+P + Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635 Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S+ ++ AD + IE RVLA + ++ +AF G+D++ T Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V QV R K + + Y + L + + Sbjct: 687 MKVFGVEADQVDILMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + ++ + Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +RR +P + + R+ +NT Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646 +Q + DI+ M+ + ++L VHDE++ E P ++ + S Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + +PLK + + Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872 >gi|225548253|ref|ZP_03769538.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM 10507] gi|225040593|gb|EEG50839.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM 10507] Length = 878 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 97/681 (14%), Positives = 191/681 (28%), Gaps = 155/681 (22%) Query: 19 CGICKYAEDVCVILFAFGFDDHPVELWDCV---HDPVMPQVLKEALENTDVTIVAHNSYF 75 G+ +AE+ ++ A + + + L + V + F Sbjct: 323 VGVQIFAEEGDLLGVAIAVSREEIYYVEVSGFVSGEYLADKLAQ------VAKQTQIAAF 376 Query: 76 ERTVLKACFNLDIPIHRWICTL---VLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132 VL + + W T V A LK + + GKE + + Sbjct: 377 HVKVLLKY----VNVETWTQTFGAEVAAYLLNP----------LKTAYDYEDIGKEYLGQ 422 Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKE 182 G +K E V + LE E Sbjct: 423 IFPGRQEVVGKKGDKDALAEKPEEMKRLGCFMAYVALAVKAPLEEALREAGMERIFQEIE 482 Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 L + ++ G V+ + + V +L++++ + ++L Sbjct: 483 MPLVFTLNSMEKEGIQVEGEALRVYGEQLQVRIGELEKQICGQAG-EDFNINSPKQLGAI 541 Query: 243 LFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF + L T+ +T VL P + R ++ + L + Sbjct: 542 LFEKMKLPGGKKTKTGYSTAADVLDKLAPKHPIVRDILEYRQ-LTKLKSTYADGLAGYIG 600 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 DGR+ T + TGR S QN+P Sbjct: 601 EDGRIHSTFHQ-TITATGRISSTEPNLQNIPIRMELGR---------------------- 637 Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R + EG + AD + IE RVLA M+G++ ++A+ +D++ T ++ F+ Sbjct: 638 ---LIRKVFVPREGCIFLDADYSQIELRVLAHMSGDEKLIQAYREAQDIHRLTASQVFHT 694 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 +VT QR K + G++ + + Sbjct: 695 PFEEVTDLQRRNAKAVNFG--------------IVYGISSFGLSQDLSI----------- 729 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 + + + ++ + L ++ E+G Sbjct: 730 -------------------TRKEAADYIERYFSTYPKIKGFLDGL---VKKGKEDGYVTT 767 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 GR ++ ++ + R Sbjct: 768 M-----------------------FGRRRPIPELKSSNFMQRSF---GERIAMNSP---- 797 Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMT 652 +Q + DI+ M ++L VHDE++ ET + + S + M Sbjct: 798 --IQGTAADIIKIAMNRVYSRLRQEGLRSKLILQVHDELLIETWEEELEQVSEILLEEMR 855 Query: 653 SNPSWAKGLPLKAEGYESKRY 673 S + L+ + + K + Sbjct: 856 QAAS--LDVALEVDMHTGKNW 874 >gi|149195468|ref|ZP_01872548.1| DNA polymerase I [Caminibacter mediatlanticus TB-2] gi|149134383|gb|EDM22879.1| DNA polymerase I [Caminibacter mediatlanticus TB-2] Length = 873 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 108/702 (15%), Positives = 219/702 (31%), Gaps = 181/702 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---------DPV 52 + D ET S E+ ++ F+F F+++ H D Sbjct: 321 NIVSFDTETTSL------------ENPKIVGFSFAFEENKAYYVPINHFYLGVSKQIDEK 368 Query: 53 M-PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP-IHRWICTLVLARSNGL--PSA 108 + + +++ LE ++ HN F+ +LK I + T++L P Sbjct: 369 IALKAIEKILE---KKVIGHNLKFDFKMLKDY---KIKTPTPFADTMILGWIIDPDSPVG 422 Query: 109 LKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L ++ + L + K +E +N+ + +Y D + Sbjct: 423 LDSLAKRYLNHQNIKYKEI----------------VGKNQNFSEIDIKTAAKYASEDAII 466 Query: 168 TREIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 T ++++ L+ + E L + + G VD+ L + + + L Sbjct: 467 TLKLYEVLKEKTWEEVKWDIENIEMPLINILIDMEKEGIKVDIEYLEKLQKELTQKLENL 526 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNKKLTPQAIQ 275 +E+ +L + + ++L LF L + +T ++VL+S K P + Sbjct: 527 TKEIYNLAGS-EFNIKSPKQLSHILFKVLKLPVKKKTKTGYSTDEKVLNSLKNTHPIIEK 585 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRPSR 334 + R + + + L E D + FL + TGR S QN+P + Sbjct: 586 LLEYR-KFDKLLTTYIIPLKEYAKKDKNQKVYTNFLQTGTATGRLSSKNPNLQNIPTSTE 644 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R+ I K + D + IE R+LA + Sbjct: 645 ---------------------------INIRNAFI--TDKLFISLDYSQIELRLLAHFSK 675 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + ++AF +D+++ T A+ F K+ R+I K + Sbjct: 676 DPHLIEAFLNDKDIHLETAAKIFG---EDKAKEYRSIAKSINF--------------GLI 718 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + + + + + + Sbjct: 719 YGMGP------------------------------KKLSETINVSTKEAKEFIEKYFENF 748 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 S V + + + +T E G K + D Sbjct: 749 STVKDF---IEKTKVETKEKGYVETLFK------------------------RRRFFDFN 781 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--GYDIVLTVHDEI 632 + + Y + I Q + DI+ + M++ ++L +HDE+ Sbjct: 782 SANART---------LAAYEREAVNTIFQGSAADIIKKAMIDIKNKFPSSKMILQIHDEL 832 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 + E + DE +M + +PLK +KR+ Sbjct: 833 IFEIDNKDEAY--EYKEIMENAIK--LEVPLKVGISFAKRWG 870 >gi|220929491|ref|YP_002506400.1| DNA polymerase I [Clostridium cellulolyticum H10] gi|219999819|gb|ACL76420.1| DNA polymerase I [Clostridium cellulolyticum H10] Length = 896 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 93/644 (14%), Positives = 196/644 (30%), Gaps = 143/644 (22%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110 + L+E E+ D+ H+ LK+ +++ + T + A + Sbjct: 371 ETVVNELREIFESKDIEKYGHDLKNLYKYLKSH-GIELE-NVIFDTFIAAYILEPTRSTY 428 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + E LS K+++ + ++ + C V Sbjct: 429 TISE---LSEDKLKQSITPVEILYDKHGKRLEQGQDVSSSEV--------CAAAVNAIYG 477 Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + ++L P+ E L + + RG+ VDV ++ +D L+ Sbjct: 478 LTQKLRPIIRDNGQDELYYKIELPLVEVLANMELRGFKVDVENLKAYSKELDSRLVILEN 537 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277 E+ + ++L LF + GL + T+ +T VL ++ Sbjct: 538 EIYMQAG-ETFNINSPKQLGVILFEKLGLPVGKKTKTGYSTSAEVLEQLSYKHEIVERIL 596 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R + + L+ + DG++ + TGR S QN+P Sbjct: 597 EYRQ-LMKLKSTYADGLLSVLEQDGKIHSNFNQ-TVTATGRISSTEPNLQNIPVKLEMGR 654 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQ 396 + +R I + L+ AD + IE RVLA + G+ Sbjct: 655 K-------------------------IRKVFIPTNSDYVLLDADYSQIELRVLAHITGDP 689 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF ED++ TT ++ F + P +V+ R+ K + + G Sbjct: 690 NMIEAFINNEDIHTTTASKVFGIPPEEVSSLMRSRAKAVNFGIV--------------YG 735 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + K+S+ Sbjct: 736 IGDFSLSKDI------------------------------GVTKKEARKYIDDYLDKYSK 765 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + ++ + R ++ ++ Sbjct: 766 VKEYMSDTVEKGKE--------------------------FGFVTTLYNRRRYLPELKSS 799 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630 + + R +Q + DI+ M+ K ++L VHD Sbjct: 800 NFNMRSF---GERVAMNTP------IQGSAADIIKISMVKVYTELKKRKLKSKLILQVHD 850 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E++ ET ++ +L M + +PL + + Sbjct: 851 ELIVETEKSELEEVSKLLKDCMENAVQ--LKVPLTVDVKHGDSW 892 >gi|288553689|ref|YP_003425624.1| DNA polymerase I [Bacillus pseudofirmus OF4] gi|288544849|gb|ADC48732.1| DNA polymerase I [Bacillus pseudofirmus OF4] Length = 875 Score = 317 bits (813), Expect = 4e-84, Method: Composition-based stats. Identities = 90/662 (13%), Positives = 184/662 (27%), Gaps = 131/662 (19%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEALENTDVTIVAHNSYFERTVLKAC 83 + FA + + E ++ ++ VL Sbjct: 327 HQADIAGFALVHEKGR-YFIPT---ETALRSDLFVEWAKDETKKKWLLDAKRGVVVLGW- 381 Query: 84 FNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 D+ + L+ + + + + K + E + + KG + Sbjct: 382 --KDVLLDGVDFDLLMASYLLDPSHSSHDLSDIATRKGAKSIQADEAV--YGKGAKRKVP 437 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 H K + + ++ E E L + + G VD+ Sbjct: 438 ETDVLAEHLVRKANVIYELKERMEEELKKNEQFELFKDLEMPLSVVLGRMETEGVKVDID 497 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +L++ + + ++L LF + GL + T+ +T Sbjct: 498 QLKAMGEDLASRLAELEKHIHEHAGVS-FNINSPKQLGEVLFEKLGLPVIKKTKTGYSTS 556 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + + R + + LV+ + T ++TGR Sbjct: 557 ADVLEKLAEDHEIIRHILHYRQ-LGKLNSTYIEGLVKVTHKGTSKIHTRFNQALTQTGRL 615 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R I EG K++ Sbjct: 616 SSTDPNLQNIPIRLEEGRK-------------------------IRKAFIPSEEGWKILA 650 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ + AF+ D++ T F+V+ VT R K + Sbjct: 651 ADYSQIELRVLAHIAQDEKLITAFKEDMDVHTKTAMDVFHVSEEDVTSMMRRSAKAVNFG 710 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + + + + + E E+ Sbjct: 711 IVYGIS-----DYGLSQSLGITRKEAAKFIERYLASYPNVAEYMERIIEEARENGYVSTL 765 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 766 -----------------------------------------LNRRRYLPELTSRNFNQRS 784 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617 R+ +NT +Q + DI+ + M+ Sbjct: 785 F---------------AERTAMNT------------------PIQGTAADIIKKAMVEMA 811 Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 ++L VHDE++ E P + + +M + A +PLK + Sbjct: 812 LRLEEANLKSRLLLQVHDELIFEVPPEEVDEMMKIVPEVMENAVELA--VPLKVDISAGD 869 Query: 672 RY 673 + Sbjct: 870 TW 871 >gi|319401005|gb|EFV89224.1| DNA polymerase I [Staphylococcus epidermidis FRI909] Length = 876 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 96/663 (14%), Positives = 194/663 (29%), Gaps = 131/663 (19%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81 Y +D ++ F F + V + D + L + LE+ + T + +++ + V Sbjct: 328 YLKDA-ILKFGFYTNHQHVVI--NADDVKDYKNLVQWLEDKNTTKIVYDAKKTY---VSA 381 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 ++I ++ + ++ V +S K+ I F KG+ H Sbjct: 382 HRLGINIENIE-FDVMLASYIIDPSRSIDDVKSV--VSLYGQNYVKDNITVFGKGKKHHI 438 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 + H + + E + ++E L E L + + + G D+ Sbjct: 439 PEESILNEHIASVTEAISAVTPIMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDI 498 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 + + + L + + G + ++L LF L + T+ +T Sbjct: 499 NDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGYST 557 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + P + R S+ + L + ++ D R+ A +TGR Sbjct: 558 AVDVLEKLQGEHPIIDDILEYRQ-LSKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGR 615 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLV 377 S QN+P + +R S+ ++ Sbjct: 616 LSSVDPNLQNIPIRLEEGRK-------------------------IRKAFKPTSKDSVIL 650 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA + ++ AF G D++ T + FNV QV R K + Sbjct: 651 SADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF 710 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 G++ + Sbjct: 711 --------------GIVYGISDYGLSQ------------------------------SLG 726 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + V + +++ + G Sbjct: 727 ITRKKAKAFIDDYLASFPGVKQYMSDI---VKDAKAQGYVETLLH--------------- 768 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R D+ + R +Q + DI+ M+ Sbjct: 769 --------RRRYIPDITSRNF---NLRSFAERTAMNTP------IQGSAADIIKLAMVKF 811 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670 ++ ++L VHDE++ E P ++ + S + +M +PLK + Sbjct: 812 SEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYG 869 Query: 671 KRY 673 + Sbjct: 870 ATW 872 >gi|227499957|ref|ZP_03930050.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC 35098] gi|227218066|gb|EEI83339.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC 35098] Length = 880 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 94/660 (14%), Positives = 198/660 (30%), Gaps = 142/660 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A D P + D D K+ E+ + + + + VL +D+ + Sbjct: 338 LAIKTKDSPAYILD--PDQAFIDSFKDVFEDEKILKNSFDIKEDI-VLLNKLGIDLNL-P 393 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 + +++ + + K L ++ Sbjct: 394 FDDLMLMHYLIDPSRSSYDL---------KTLSQAYLDYEVISEVDLLGKGKKSLSYGEL 444 Query: 153 AWRLFGEY------CKGDVTV----TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 + Y D +K + E +L + + G+ D Sbjct: 445 DYDKLSNYLASELNAIEDAKAKLVDMLNEYKMYDLYEDIEIKLSKVLANMEIVGFVTDRK 504 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + L + ++ + KL E+ L + ++L LF + L + T+ +T Sbjct: 505 VLLDLKEDINKDLEKLTSEIYELAGS-EFNINSTKQLGEVLFKDLDLPVIKKTKTGFSTD 563 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + ++ R + + L +A++ DGR+R T + A+ TGR Sbjct: 564 ASVLEKLRDKHQIIPKIEKYR-ELFKLQSTYIEGLEKAIDDDGRIRSTFRQNIAA-TGRL 621 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QNLP + +R A +GK L+ A Sbjct: 622 SSQDPNLQNLPIKTDEGR-------------------------LIRKAFKAGQGKILIDA 656 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R+LA ++G++ ++AF GED++ T ++ F+ +VTK QR+ K + + Sbjct: 657 DYSQIELRILASLSGDEHMIEAFRNGEDIHAKTASKVFHTPLDEVTKRQRSDAKAVNFGI 716 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 G++ + Sbjct: 717 I--------------YGISDYGLSQ------------------------------NLNIP 732 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + + + + + + ++ + Sbjct: 733 RKEAKAYIDNYMASYPSIKAYMDSIVEKAKE--------------------------DGF 766 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + R ++ + + + ++ +Q + DI+ M+ K Sbjct: 767 VETLFNRRRYVPEINSKNFNVRSFGQR---------VALNTPIQGTAADIIKIAMIETDK 817 Query: 620 ------AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672 IVL +HDEI+ E + + +L + M +PL + + Sbjct: 818 NLKKAGLDAKIVLQIHDEIILEASLEDKDSAMEILRNSMQEAA--NLKVPLIVDIDTGES 875 >gi|289423054|ref|ZP_06424870.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L] gi|289156527|gb|EFD05176.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L] Length = 909 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 92/657 (14%), Positives = 204/657 (31%), Gaps = 140/657 (21%) Query: 38 DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICT 96 D + + D MP+ + + +E+ D+ + N + L+ I + + Sbjct: 368 DPYKIYYMDKELAESMPKEIVDLIEDEDIEKIGCNIKSDYINLRPY---GIRLGKIGFDI 424 Query: 97 LVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 + ++ A K +KM ++L+ + K + +E + + Sbjct: 425 SIAEYIIDSKTSTSYDFDVIASKYIYKKMTSEEDLLGKGAKAKKYEDIEKEDLDKFAIGI 484 Query: 155 RLFG-------EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 D + + ++ E L + + G VD L Sbjct: 485 MNTLSGVVPKMRQIIKDDDMEKLLY-------DVEIPLIEVLGDMEYIGIHVDKKTLDEL 537 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 + + L+ ++ ++ + ++L LF + L + T+ +T VL Sbjct: 538 GVLFNDRIKYLETKIYDISG-EKFNINSPKQLGLILFEKLELPVIKKTKTGYSTNAEVLE 596 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCV 323 + P + + R + + + +N DGR+ + A+ TGR S Sbjct: 597 KLRDKHPIIDMITDYR-TVVKLKSTYVEGINNLINPLDGRIHSSFNQAIAT-TGRISSTD 654 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+P + + +R +A +G KLV AD + Sbjct: 655 PNMQNIPVRT-------------------------DLGRQLRRVFVAGQGSKLVDADYSQ 689 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 +E RVLA M+G++ ++AF+ G D++ T ++ F V +V+ + R+ K + + Sbjct: 690 VELRVLADMSGDEDMIEAFDRGVDIHRNTASQVFGVPFDEVSAELRSAAKAVNFGII--- 746 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 ++ A + Sbjct: 747 -----------------------------------------YGKSDFGLAKDLDISIAKA 765 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + + ++ + + E G + Sbjct: 766 KEYIENYFARFPKIKGFMDHI---VSDAEEKGYSTTI----------------------- 799 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620 GR ++ ++ + R +Q + DI+ M+N Sbjct: 800 FGRRRYIPEIKSSNFVEKN---RGIRAAMNAP------IQGSAADIIKIAMVNVHNRLEE 850 Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++L VHDE++ E+P + +L M + + L + + Sbjct: 851 EGLKSNLILQVHDELIVESPIEEVERVRVLLKEEMENAV--NLKVNLDVDLNVGDSW 905 >gi|302670972|ref|YP_003830932.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316] gi|302395445|gb|ADL34350.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316] Length = 740 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 88/683 (12%), Positives = 180/683 (26%), Gaps = 162/683 (23%) Query: 29 CVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSYFERTVLK---- 81 ++ + F+++ + + + L E + V++V + V Sbjct: 178 EILGMSVCFNENEAIYIPVENFITADYLGKKLSEL--SNSVSLVTFDIKESYRVFTPFEV 235 Query: 82 --ACFNLDIPIH---------RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 + R L+ A V K G L Sbjct: 236 SDRDYGYSCKGEHTEDYKSKPRCFDDLIAAYLVNPNKNDYEVS-----DVAKEYLGLSLE 290 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE---IFKRLEPLSSKEQELWY 187 + + +Y V + + + + Sbjct: 291 KKIDLFGKK--------SIREADDKSVVQYACKCAFVCFKAEPLICKKLEKLQMLDLFYN 342 Query: 188 LDQT-------INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 ++ + G + + ++L++ + + ++L Sbjct: 343 IEMPLSYVLYSMEKEGIIARRDELKAYGDKLQIRISELEKSIYEAAGV-EFNINSPKQLG 401 Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF GL E T++ T VL P + R ++ + L Sbjct: 402 EILFERLGLPAEKKTKSGYSTAADVLEKLAPDYPIVADILEYR-GLAKLKSTYADGLAAY 460 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 + DGR+ + + TGR S QN+P + Sbjct: 461 IEEDGRIHTSFNQ-TITATGRISSTEPNLQNIPMRTELGR-------------------- 499 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R + E AD + IE R+LA M+ +Q + A+ G+D++ T ++ F Sbjct: 500 -----LIRKVFVPKEDHVFADADYSQIELRILAHMSEDQELIAAYHEGKDIHGITASKVF 554 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 +V +VT QR K + + Y + L+ Sbjct: 555 HVPFEEVTPLQRRNAKAVNFGIVYG-----ISSFGLSQDLS------------------- 590 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 + + + + V + ++ Sbjct: 591 --------------------ISVKEAKEYMDKYFETYPGVKAYQERVIADAKE------- 623 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 + GR ++ + + R Sbjct: 624 -------------------KGYSLTMFGRRRPIPELKASNYMMRQF---GERVAMNAP-- 659 Query: 598 TENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHL 650 +Q + DI+ M+N K ++L +HDE+V ET +E ++L Sbjct: 660 ----IQGTAADIMKIAMINVYFRLKKEKLVSKLILQIHDELVIETLKDEEEKVTALLTQE 715 Query: 651 MTSNPSWAKGLPLKAEGYESKRY 673 M +PL AE + + Sbjct: 716 MERAAD--LSVPLLAECHSGTDW 736 >gi|283770754|ref|ZP_06343646.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19] gi|283460901|gb|EFC07991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19] Length = 876 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59 ET S ++ + + A + F + D L Sbjct: 302 IET-SFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGENHIVINADDINNYAELVS 360 Query: 60 ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 LEN + V +++ + V +DI ++ + + V + Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L Q K+ ++ + KG+ + D + + + K ++ E + ++E Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + + G DV + + + + L + + + + Sbjct: 475 LADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF L + T+ +T VL + P + R S+ + L Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAIDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ D R+ A +TGR S QN+P + Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635 Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S+ ++ AD + IE RVLA + ++ +AF G+D++ T Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V QV R K + + Y + L + + Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + ++ + Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +RR +P + + R+ +NT Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AKRTAMNT----------- 794 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646 +Q + DI+ M+ + ++L VHDE++ E P ++ + S Sbjct: 795 -------PIQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + +PLK + + Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872 >gi|282916950|ref|ZP_06324708.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139] gi|282319437|gb|EFB49789.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139] Length = 876 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59 ET S ++ + + A + F + D L Sbjct: 302 IET-SFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGENHIVINADDINNYAELVS 360 Query: 60 ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 LEN + V +++ + V +DI ++ + + V + Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L Q K+ ++ + KG+ + D + + + K ++ E + ++E Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + + G DV + + + + L + + + + Sbjct: 475 LADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF L + T+ +T VL + P + R S+ + L Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAIDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ D R+ A +TGR S QN+P + Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635 Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S+ ++ AD + IE RVLA + ++ +AF G+D++ T Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V QV R K + + Y + L + + Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + ++ + Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +RR +P + + R+ +NT Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646 +Q + DI+ M+ + ++L VHDE++ E P ++ + S Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + +PLK + + Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872 >gi|326391770|ref|ZP_08213290.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200] gi|325992186|gb|EGD50658.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200] Length = 872 Score = 317 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 97/694 (13%), Positives = 201/694 (28%), Gaps = 156/694 (22%) Query: 11 RSPIDLTKCGI----------CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 S +D+ K + + AF F + V D + LKE Sbjct: 300 WSKVDIRKLITLLQDSRNIAFYPLIYEGEIKKIAFSFGEDTV-YIDVFQ----IEDLKEI 354 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 E + H + V + ++ ++I T V+A + + LK Sbjct: 355 FEKEEFEFTTHEIK-DFLVKLSYKGIECK-SKYIDTAVMAYLLNPSESNYDLDRVLK--- 409 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL-- 178 K L E K + +Y ++ ++L Sbjct: 410 ------KYLKVDVPSYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLREKLMNFIE 463 Query: 179 --------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E L + + + G+ +D + L+Q +D ++ ++ Sbjct: 464 EMDMKKLLLEIEMPLVEVLKLMEVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEAGYQ- 522 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L +LF + L + T+ +T VL + R ++ Sbjct: 523 FNVNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNDVVSDIIEYRQ-LTKLK 581 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 ++ + M+ + R+ + + + TGR S QN+P Sbjct: 582 STYIDGFLPLMDENNRVHSNFKQMV-TATGRISSTEPNLQNIPIREEFGR---------- 630 Query: 348 TSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 +R I + +V AD + IE RVLA ++G++ +++F E Sbjct: 631 ---------------QIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNE 675 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D+++ T A F V +VT + R K + G++ + Sbjct: 676 DIHLRTAAEVFKVPMEKVTPEMRRAAKAVNF--------------GIIYGISDYGLS--- 718 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + + + +++ V E ++ + Sbjct: 719 ---------------------------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVR 751 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 ++ N + R ++ + T Q Sbjct: 752 FAKE--------------------------NGYVTTIMNRRRYIPEINSRNF---TQRSQ 782 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD 640 R +Q + DI+ M+ + ++L VHDE+V +T + Sbjct: 783 AERLAMNAP------IQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHDELVVDTYKDE 836 Query: 641 EFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 + M + +PL E + Sbjct: 837 VDIVKKILKENMENVIK--LKVPLVVEIGIGPNW 868 >gi|56964474|ref|YP_176205.1| DNA polymerase I [Bacillus clausii KSM-K16] gi|56910717|dbj|BAD65244.1| DNA-directed DNA polymerase I [Bacillus clausii KSM-K16] Length = 877 Score = 317 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 89/684 (13%), Positives = 184/684 (26%), Gaps = 145/684 (21%) Query: 11 RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVA 70 SP L + + + A + + V + + + Sbjct: 314 SSPSALVVEVLAENYHQAEIAGMAVANEKG-CFYFP-TEKAVKSDAFRAFARSQEKKKWL 371 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 ++ L +D+ + + + + ++ Sbjct: 372 FDAKRAVVALAWH-GVDLNGVD-FDLQMASYLLDPSLSSHEIS---------DIATRKGT 420 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE-------- 182 + E + E+ + LE ++ Sbjct: 421 GGVAEDEAVYGKGAKR---SLPEEAALAEHLCRKANAMFTLKSTLEDELAQNEQLELLKK 477 Query: 183 --QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 L + + G VD + + + L++ + + ++L Sbjct: 478 LEMPLSVVLGRMEKEGVRVDREQLEEMGKDLSDRLNTLEKAIHKEAG-EPFNINSPKQLG 536 Query: 241 TWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + GL T+ +T VL P + R + + L++ Sbjct: 537 VILFEKLGLPPVKKTKTGYSTSADVLEKLAGTHPIIEHLLLYRQ-LGKLYSTYIEGLLKV 595 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 ++S+ T ++TGR S QN+P + Sbjct: 596 IDSETGKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRK------------------- 636 Query: 358 QIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R +A EG K+V AD + IE RVLA ++G++ +AF TG D++ T Sbjct: 637 ------IRKAFVASKEGWKIVAADYSQIELRVLAHISGDERMKEAFLTGMDIHTKTAMDV 690 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F+V +VT R K + + Y + L + + + Sbjct: 691 FHVKREEVTDLMRRSAKAVNFGIVYGIS-----DYGLSQSLGITRKEAKDFIDRYLASYP 745 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 + + + + E Sbjct: 746 QVKAYMENVVKEAKEKGYVQTL-------------------------------------- 767 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 +RR +P + + R+ +NT Sbjct: 768 ---LARRRYLPELKSRNFNQRSF---------------AERTAMNTP------------- 796 Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-H 649 +Q + DI+ M+ ++A +++L VHDE++ E D L Sbjct: 797 -----IQGTAADIIKRAMVKMSEALEETGLKANMLLQVHDELIFEVAPDDVEPLQELVTE 851 Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673 +M +PL+ + + Sbjct: 852 VMEQALE--LDVPLQVDVSSGNSW 873 >gi|27262526|gb|AAN87544.1| DNA polymerase I [Heliobacillus mobilis] Length = 932 Score = 317 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 89/653 (13%), Positives = 183/653 (28%), Gaps = 148/653 (22%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFNLDIPIHRWIC 95 P +W + K + + ++ +L +++I Sbjct: 400 PEPPRVWVVDDPGPIFAEAKPFWSSEKHRKLF----YDVKSLWLLARQEDVEIQGID-GD 454 Query: 96 TLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 L+ A +L + L E GK+++ L+ + Sbjct: 455 GLIGAYLLDPLANNYSLARLAHELIDWKISPEAGKQVLPAEDAALAVAGLFHLTPAMEAK 514 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 DV + + ++ G V+ + + ++ Sbjct: 515 LGEESLGKLYRDVELPLA----------------PILGSMEWIGIKVNPKVLQDMAGELN 558 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKL 269 + KL E+ L + ++ LF + GL + T+ +T VL Sbjct: 559 SDIQKLQAEIHELAG-ETFNINSTQQFGKILFEKLGLPVIKRTKTGYSTDVEVLEELSDR 617 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 P +V R + + L+ ++ +GR+ + + TGR S QN Sbjct: 618 HPIVPKVLEFRQ-LMKLKSTYVEGLLPLIDGPEGRIHTSFNQSV-TATGRLSSTEPNLQN 675 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEAR 387 +P +R IA G L+ AD + IE R Sbjct: 676 IPVRLEQGRH-------------------------IRKAFIAPEPGWTLLAADYSQIELR 710 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA ++ + AF +D++ T + F+V VT++ R K + + Y Sbjct: 711 ILAHLSDDPSFKDAFAKNQDIHTRTASEVFDVPMGNVTREMRRRAKAVNFGIVYGIS--- 767 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + L + + + + + Sbjct: 768 --DFGLSRDLGVTRGEAKEYIEGYFRRYHGVRGYIDRIIAEARQQGFVTTL--------- 816 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 +RR +P +++K Sbjct: 817 --------------------------------LGRRRRLPDLFVKNKIRQNF-------- 836 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 R+ +NT +Q + DI+ M+ KA Sbjct: 837 -------GERTAMNT------------------PIQGTAADIIKAAMVKIPKALKDHGLK 871 Query: 622 YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + + ++ +M +PL + + + Sbjct: 872 TRMLLQVHDELIFEVPEEELTVVAPLIKRIMEKTIE--ISVPLTVDVKKGANW 922 >gi|326204649|ref|ZP_08194505.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782] gi|325985216|gb|EGD46056.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782] Length = 896 Score = 317 bits (811), Expect = 6e-84, Method: Composition-based stats. Identities = 89/644 (13%), Positives = 193/644 (29%), Gaps = 143/644 (22%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110 L+E E+ D+ H+ LK+ +++ + T + A + Sbjct: 371 QEALNELREIFESKDIEKYGHDLKNLYKYLKSH-GIELE-NVIFDTFIAAYILEPTRSTY 428 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + E K+++ + +++ + C V Sbjct: 429 TISELY---EDKLKQSITPVEILYDKHGKRLQQEQDISSSEV--------CAAAVNAIYV 477 Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + ++L P+ E L + + RG+ VDV ++ +D L+ Sbjct: 478 LIQKLRPIIRDNGQDELYYEIELPLVEVLADMELRGFKVDVEGLQAYSKEMDSRLVILEN 537 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277 E+ + ++L LF + GL + T+ +T VL ++ Sbjct: 538 EIYMQAG-ETFNINSPKQLGVILFEKLGLPVGKKTKTGYSTNAEVLEQLSYKHEIVERIL 596 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R + + L+ + DG++ + TGR S QN+P Sbjct: 597 EYRQ-LMKLKSTYADGLLSVLEQDGKIHSNFNQ-TVTATGRISSTEPNLQNIPVKLEMGR 654 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQ 396 + +R I + + L+ AD + IE RVLA + + Sbjct: 655 K-------------------------IRKVFIPTNQDYVLLDADYSQIELRVLAHITDDS 689 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF ED++ TT ++ F + P +V+ R+ K + + G Sbjct: 690 NMIEAFLKNEDIHTTTASKVFGIPPEEVSSLMRSRAKAVNFGIV--------------YG 735 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + K+S+ Sbjct: 736 IGDFSLSKDI------------------------------GVTKKEARQYIDDYLDKYSK 765 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E ++ + ++ + R ++ ++ Sbjct: 766 VKEYMSDTVEKGKE--------------------------FGFVTTLYNRRRYLPELKSS 799 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + + R +Q + DI+ M+ ++L VHD Sbjct: 800 NFNMRSF---GERVAMNTP------IQGSAADIIKISMVKVYNELKKRKLKSKLILQVHD 850 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E++ ET ++ +L M + +PL + + Sbjct: 851 ELIVETEKSELEEVSKLLKDCMENAVQ--LKVPLTVDVKHGDSW 892 >gi|289578024|ref|YP_003476651.1| DNA polymerase I [Thermoanaerobacter italicus Ab9] gi|289527737|gb|ADD02089.1| DNA polymerase I [Thermoanaerobacter italicus Ab9] Length = 872 Score = 317 bits (811), Expect = 6e-84, Method: Composition-based stats. Identities = 98/697 (14%), Positives = 202/697 (28%), Gaps = 158/697 (22%) Query: 9 ETRSPIDLTKCGI----------CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 E S +D+ + + + AF F V D + LK Sbjct: 298 EKWSKVDIKELVTLLQDNRNIAFYPLIYEGEIKKIAFSFGKDTV-YIDVFQ----TEDLK 352 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 E E D H + V + ++ ++I T V+A + + LK Sbjct: 353 EIFEKEDFEFTTHEIK-DFLVRLSYKGIECK-SKYIDTAVMAYLLNPSESNYDLDRVLK- 409 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 K L E K + +Y ++ ++L Sbjct: 410 --------KYLKVDVPSYEGIFGKGRDKKKIEEIDENILADYICSRCVYLFDLKEKLMNF 461 Query: 179 ----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E L + +++ G+ +D + L+Q +D ++ ++ Sbjct: 462 IEEMDMKKLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKIDDRIGEILDKIYKEAGY 521 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L +LF + L + T+ +T VL + R ++ Sbjct: 522 Q-FNVNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNDIVSDIIEYRQ-LTK 579 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 ++ + M+ + R+ + + + TGR S QN+P Sbjct: 580 LKSTYIDGFLPLMDENNRVHSNFKQMV-TATGRISSTEPNLQNIPIREEFGR-------- 630 Query: 346 LPTSITSDPDPLQIISDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +R I +G +V AD + IE RVLA ++G++ +++F Sbjct: 631 -----------------QIRRAFIPRSRDGY-IVSADYSQIELRVLAHVSGDEKLIESFM 672 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 ED+++ T + F V +VT + R K + G++ + Sbjct: 673 NNEDIHLRTASEVFKVPMEKVTPEMRRAAKAVNF--------------GIIYGISDYGLS 718 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + + +++ V E + Sbjct: 719 ------------------------------RDLKISRKEAKEYINNYFERYKGVKEYIEK 748 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + + ++ N + R ++ + T Sbjct: 749 IVRFAKE--------------------------NGYVTTIMNRRRYIPEINSRNF---TQ 779 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETP 637 Q R +Q + DI+ M+ ++L VHDE+V +T Sbjct: 780 RSQAERLAMNAP------IQGSAADIIKMAMVKVYNDLKKLKLKSKLILQVHDELVVDTY 833 Query: 638 DTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PL E + Sbjct: 834 KDEVDIIKKILKENMENVVQ--LKVPLVVEIGVGPNW 868 >gi|313633103|gb|EFS00003.1| DNA polymerase I [Listeria seeligeri FSL N1-067] Length = 566 Score = 316 bits (810), Expect = 6e-84, Method: Composition-based stats. Identities = 81/664 (12%), Positives = 177/664 (26%), Gaps = 148/664 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89 + KE +E+ +V ++ V + Sbjct: 24 IGLTIHSDKGTYFFTKETAENSPAFKEWVESDASKVV-----YDAKKTMVAMHRLGYAVS 78 Query: 90 IHRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 ++ + ++ V + + +E + R+ Sbjct: 79 GIT-FDIMLASYLLNPSDSIADFTSVAIRHDYTEVETDE-----------AVYGKGAKRS 126 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVD 200 P + + + LE + E L ++ + +G VD Sbjct: 127 TPEESVVAPHLARKAVAIAVLEKRLLDDLEKNEQLSLMEDLELPLTFVLAQMEMQGVSVD 186 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + + L++ + SL + ++L LF + GL T+ + Sbjct: 187 TKRLEDMKVELAGRLKTLEESIHSLAG-EEFNINSPKQLGVILFEKLGLPAVKKTKTGYS 245 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL S ++ R + + L++ + + T ++TG Sbjct: 246 TAADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTG 304 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKL 376 R S QN+P + +R + S G K+ Sbjct: 305 RLSSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSQPGWKI 339 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 AD + +E RVLA ++ ++ + AF+ D++ T F+V +V R K + Sbjct: 340 FSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVN 399 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ + Sbjct: 400 --------------FGIVYGISDYGLSQ------------------------------NL 415 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + + V E ++ + ++ + I Sbjct: 416 GITRKDAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH--------------- 458 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R ++ + R +Q + DI+ + M+ Sbjct: 459 ---------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMIL 500 Query: 617 A------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 K ++L VHDE++ E P+ + + +M + +PLK + Sbjct: 501 MSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAF 558 Query: 670 SKRY 673 + Sbjct: 559 GDTW 562 >gi|297544296|ref|YP_003676598.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842071|gb|ADH60587.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 872 Score = 316 bits (810), Expect = 6e-84, Method: Composition-based stats. Identities = 97/697 (13%), Positives = 202/697 (28%), Gaps = 158/697 (22%) Query: 9 ETRSPIDLTKCGI----------CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 E S +D+ + + + AF F V D + LK Sbjct: 298 EKWSKVDIKELVTLLQDNRNIAFYPLIYEGEIKKIAFSFGKDTV-YIDVFQ----TEDLK 352 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 E E D H + V + ++ ++I T V+A + + LK Sbjct: 353 EIFEKEDFEFTTHEIK-DFLVRLSYKGIECK-SKYIDTAVMAYLLNPSESNYDLDRVLK- 409 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 K L E K + +Y ++ ++L Sbjct: 410 --------KYLKVDVPSYEGIFGKGRDKKKIEEIDENILADYICSRCVYLFDLKEKLMNF 461 Query: 179 ----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E L + +++ G+ +D + L+Q +D ++ ++ Sbjct: 462 IEEMDMKKLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKIDDRIGEILDKIYKEAGY 521 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L +LF + L + T+ +T VL + R ++ Sbjct: 522 Q-FNVNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNDIVSDIIEYRQ-LTK 579 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 ++ + M+ + R+ + + + TGR S QN+P Sbjct: 580 LKSTYIDGFLPLMDENNRVHSNFKQMV-TATGRISSTEPNLQNIPIREEFGR-------- 630 Query: 346 LPTSITSDPDPLQIISDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +R I +G +V AD + IE RVLA ++G++ +++F Sbjct: 631 -----------------QIRRAFIPRSRDGY-IVSADYSQIELRVLAHVSGDEKLIESFM 672 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 ED+++ T + F V +VT + R K + G++ + Sbjct: 673 NNEDIHLRTASEVFKVPMEKVTPEMRRAAKAVNF--------------GIIYGISDYGLS 718 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + + +++ V + + Sbjct: 719 ------------------------------RDLKISRKEAKEYINNYFERYKGVKDYIEK 748 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + + ++ N + R ++ + T Sbjct: 749 IVRFAKE--------------------------NGYVTTIMNRRRYIPEINSRNF---TQ 779 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETP 637 Q R +Q + DI+ M+ ++L VHDE+V +T Sbjct: 780 RSQAERLAMNAP------IQGSAADIIKMAMVKVYNDLKKLKLKSKLILQVHDELVVDTY 833 Query: 638 DTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PL E + Sbjct: 834 KDEVDIIKKILKENMENVVQ--LKVPLVVEIGVGPNW 868 >gi|147678493|ref|YP_001212708.1| DNA polymerase I [Pelotomaculum thermopropionicum SI] gi|146274590|dbj|BAF60339.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Pelotomaculum thermopropionicum SI] Length = 751 Score = 316 bits (810), Expect = 7e-84, Method: Composition-based stats. Identities = 118/700 (16%), Positives = 208/700 (29%), Gaps = 130/700 (18%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD-DHPVELWDCVH--------DPVMPQ 55 D ET G+ Y + ++ + H + Sbjct: 140 AFDTETT--------GVDVYQDV--IVGVSLTLPRAGYHVYIPVAHNNAGPQLRRSYVLN 189 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAV 112 LK L + V V HN+ F+ +L + + T++ + ALK + Sbjct: 190 GLKRYLTDPTVGKVLHNAKFDIHMLLRH-GMRMRGLA-HDTMIAMKILNENEPSVALKNL 247 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E F K + Y D +T E++ Sbjct: 248 ATRYGKFFGFDGESHTFEDLFGKA-----------CFADVPLDMALIYAAKDTHLTWELY 296 Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 K E L + + G+ VD A A + + E ++++ Sbjct: 297 KWQMEHLTKREDLLKLYRELENPLVDICVEMEQTGFAVDTAFAQEYGEELKGELAEVEKT 356 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 L + + +L L+ GL +T + L K P + R Sbjct: 357 LVAHFGEINF--NSPAQLAEVLYDRLGLPQG-KERSTDVKTLKGLKGRHPGIEPLLKYR- 412 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ + L + +DGR+ G+ A+ TGR++ QNLP + Sbjct: 413 ELTKLLGTYVEALPHQLKADGRIHGSFNQ-VATVTGRFASREPNLQNLPPRA-------- 463 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 R ++A +G L+ D + IE R+LA M+G+ + Sbjct: 464 -----------------------RRLIVAPKGWLLLGIDFSQIEPRILAHMSGDPHFREP 500 Query: 402 FETGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 + GEDLY T AR F V ++ R + K+ LA+ Y + L + Sbjct: 501 YLKGEDLYSTLAARVFKVPLSECGDGSKYRKMMKIGLLAVMYGTSMFTLSE-----QLGI 555 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + +E+ D F + E ++ G ++ Sbjct: 556 SVEEAHRFIEGFYDEYPDVYAFIKDTWEFVKKNEYVATLYGRK---------RRFPGHR- 605 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 QA K A VPL + +D+ Sbjct: 606 -----EQAIVYDQLAAKICKALGTERVPLDFWSNKGIP-------------KDLKRKFGA 647 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDIVLTVHDEIVCE 635 + ++ R +Q + DI+ ++N + G+ I TVHDE + Sbjct: 648 VKGEVERVRRMAVNAR------IQGTAADIMKRALLNLYEYTRARGWKINGTVHDEALLL 701 Query: 636 TPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 DT L M +P+K + R+ Sbjct: 702 VRDTITLAEVEELEACMVRAAE--LEVPVKVDTEIMARWG 739 >gi|310822212|ref|YP_003954570.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] gi|309395284|gb|ADO72743.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] Length = 899 Score = 316 bits (809), Expect = 8e-84, Method: Composition-based stats. Identities = 115/675 (17%), Positives = 207/675 (30%), Gaps = 154/675 (22%) Query: 30 VILFAFGFDDHPVELWDCVHDP----VMPQVLKE-----ALENTDVTIVAHNSYFERTVL 80 ++ D HD +P+ L + V H + VL Sbjct: 344 LVGLGIALPDGRTAYVPLRHDVLGSVQVPEARFAHVMGGLLADPAVKKGGH----DLKVL 399 Query: 81 KACFNLDIPI---HRWICTLVLARSNGLP---SALKAVG-EALKLSSQKM---EEGKE-- 128 + + +L+ AL + E L L + EGK+ Sbjct: 400 SLLLG-GMKLTLQGAHDDVELLSYLLNPSRREHALPDLSRERLGLELPALPATAEGKKGR 458 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 + E R R A RL+ E + E L + Sbjct: 459 PLVEHSAEEVAAAYGARADAARRLAPRLWEELEAIGLAALAR---------DMELPLLPI 509 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + +G +D A+ TL+ VD E + + +L + +L L+ + Sbjct: 510 LARMEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQ-EFNVGSNPQLAQVLYEKLQ 568 Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + + +T Q VL + P + R S+ L+TL + DGR+ Sbjct: 569 LPILKKGKTGPSTDQEVLEKLAEQHPLPGAILEYR-SLSKLKSTYLDTLPGLVAKDGRIH 627 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 T A+ TGR S QN+P + E +R Sbjct: 628 TTYHQA-ATATGRLSSSDPNLQNIPVRTELGRE-------------------------IR 661 Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 +A G +LV AD + +E R+LA +A + L AF+ ED++ T A F V P +V Sbjct: 662 RAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAAEIFGVTPDKVD 721 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 +DQR + K + GL+ + + + Sbjct: 722 RDQRRVAKTVNF--------------GIAYGLSPHGLSTRLSI----------------- 750 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + + +++ + L E+ + G Sbjct: 751 -------------SVEEARDIIERYFTRYAGIRRY---LEDTVERARKTGYVETM----- 789 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 GR + D+ + + + +Q Sbjct: 790 ------------------FGRRRLMADLNSKNRAVAQAAER---------AAINMPIQGT 822 Query: 606 SRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA 658 + D++ + M+ +A ++L VHDE++ E P+ + L M+S + Sbjct: 823 AADLIKKAMLAVDEALTKERLATVMLLQVHDELLFEAPEAEVDRVKALARQCMSSVAT-- 880 Query: 659 KGLPLKAEGYESKRY 673 +PLK + K + Sbjct: 881 LKVPLKVDVGAGKTW 895 >gi|313637951|gb|EFS03259.1| DNA polymerase I [Listeria seeligeri FSL S4-171] Length = 567 Score = 316 bits (809), Expect = 9e-84, Method: Composition-based stats. Identities = 81/657 (12%), Positives = 183/657 (27%), Gaps = 134/657 (20%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89 + KE +E+ +V ++ V + Sbjct: 25 IGLTIHSDKGTYFFTKETAENSPAFKEWVESDASKVV-----YDAKKTMVAMHRLGYTVS 79 Query: 90 IHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFCK-GETHECLYDRNK 147 ++ + ++ A++ ++E + + + K E + + Sbjct: 80 GIT-FDIMLASYLLNPSDSIADFTSVAIRHDYTEVETDEAVYGKGAKRSTPEESIVAPHL 138 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 A + + D+ ++ + E L ++ + +G VD + Sbjct: 139 ARKAVAIAVLEKRLLDDLEKNEQLAL----MEDLELPLTFVLAQMEMQGVSVDTKRLEDM 194 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 + L++ + SL + ++L LF + GL T+ +T VL Sbjct: 195 KVELAGRLKTLEESIHSLAG-EEFNINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLE 253 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 S ++ R + + L++ + + T ++TGR S Sbjct: 254 SLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDP 312 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAG 383 QN+P + +R + S G K+ AD + Sbjct: 313 NLQNIPIRLEEGRK-------------------------IRQVFVPSQPGWKIFSADYSQ 347 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 +E RVLA ++ ++ + AF+ D++ T F+V +V R K + Sbjct: 348 VELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVN------- 400 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G++ + Sbjct: 401 -------FGIVYGISDYGLSQ------------------------------NLGITRKDA 423 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + V E ++ + ++ + I Sbjct: 424 KDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYXETILH---------------------- 459 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------ 617 R ++ + R +Q + DI+ + M+ Sbjct: 460 --RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMSDRLKS 508 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 K ++L VHDE++ E P+ + + +M + +PLK + + Sbjct: 509 EKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 563 >gi|255655127|ref|ZP_05400536.1| DNA polymerase I [Clostridium difficile QCD-23m63] gi|296451114|ref|ZP_06892855.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08] gi|296880534|ref|ZP_06904496.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07] gi|296259935|gb|EFH06789.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08] gi|296428488|gb|EFH14373.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07] Length = 882 Score = 316 bits (809), Expect = 1e-83, Method: Composition-based stats. Identities = 99/664 (14%), Positives = 186/664 (28%), Gaps = 142/664 (21%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 +I D + D L N ++ +N + LK N+++ Sbjct: 337 IIYIFISVDGEKIYYVD----SNEVSKLDSIFSNNEIKKYGYNLKDDYISLKPY-NINLE 391 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + + + S+ A K L + E ++K Sbjct: 392 -NMYFDITISEYLIDSTSSTSYDCSA--------IAMKYLSKKVKSKEELLGKGVKSKNY 442 Query: 150 HREAWRLFGEYCKGDV--------TVTREIFKRLEPLSSKE--QELWYLDQTINDRGYCV 199 + EY + + R + L + + G V Sbjct: 443 EDLEFEDLAEYMGQIICTVKETVPMMERSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKV 502 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256 D ++ L+ L++E+ L+ + ++L LF + L + T+ Sbjct: 503 DKSILDELSVEFKEIIATLEKEIYELSG-EPFNINSPKQLGVILFEKLELPIIKKTKTGY 561 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL + P ++ R + + L+ +N + + + T Sbjct: 562 STNADVLEKLRDKHPIIDKITEYRQIV-KLNSTYVEGLLNIINPESNRIHSSFNQTITTT 620 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + +R IA + KL Sbjct: 621 GRISSTEPNLQNIPIKMEMGRK-------------------------IRKVFIADDNCKL 655 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V AD + +E RVLA M+ ++ ++AF+ ED++ T ++ FNV VT + R K + Sbjct: 656 VDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVN 715 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y LN+ S ++ + F E E Sbjct: 716 FGIIYGKS-----DFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYA- 769 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 I +RR +P + Sbjct: 770 ----------------------------------------VTILNRRRYIPEIKSSNFME 789 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R +N +Q + DI+ M+N Sbjct: 790 RNR---------------GKRFAMNA------------------PIQGSAADIIKIAMIN 816 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 K ++L VHDE++ E D + + M + + L + Sbjct: 817 VHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENAV--NIDVHLDVDLNV 874 Query: 670 SKRY 673 + Sbjct: 875 GSSW 878 >gi|81429016|ref|YP_396016.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei 23K] gi|78610658|emb|CAI55709.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei 23K] Length = 886 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 98/690 (14%), Positives = 201/690 (29%), Gaps = 135/690 (19%) Query: 3 TLFID-FETRSPIDLTKC-GICKYAED---VCVILFAFGFDDHPVELWDCVHDPVMPQV- 56 L +D ET I G+ ++ +I F G DH W D + Sbjct: 308 VLTLDNLETVQAIKTPVAFGVEMLTDNYHTADLIGFYIGAPDH----WYVSDDVALLAEP 363 Query: 57 -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 LK+ LE+ V + + L+ + + +G Sbjct: 364 VLKDWLEDASHPKAVFGVKR-TQVAANRLGVHLAGVD-FDLLLASYLLNTTNNSNDLGTV 421 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L + + E + + H + + + + ++ Sbjct: 422 ANLHEYQNVQTDEAV-YGKGAKRAVPTEPALLYQHLVQKAAAIYHLQPQLEEQLKEHQQF 480 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + + E L + + G VD + + L++++ + + Sbjct: 481 DLFTDMELPLALVLAQMEITGIRVDASRLQQMGSEFSQTLKILEEKVYAEAG-ETFNINS 539 Query: 236 LEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L LF + GL + T+ +T VL +K P + + R ++ + Sbjct: 540 PKQLGVILFEKMGLPVVKKTKTGYSTAVDVLEQLRKDAPIVQTILDYRQ-IAKIQSTYVE 598 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L+++++ D ++ ++TGR S QN+P + Sbjct: 599 GLLKSIHQDNKVHTRYLQ-TLTQTGRLSSVDPNLQNIPVRLAEGRK-------------- 643 Query: 353 DPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R + S ++ +D + IE RVLA ++G+ +AF+ D++ Sbjct: 644 -----------IRQAFVPSHPDWQMFASDYSQIELRVLAHISGDANMQEAFKEDRDIHAN 692 Query: 412 TYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + F + +VT D R K G++ + + Sbjct: 693 TAMKIFGLNSADEVTPDMRRQAKATNF--------------GIVYGISDYGLSQNI---- 734 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 +R A+ +++ V + ++ ++ Sbjct: 735 --------------------------GISRQEAKRFIDAYFEQYPGVQQFMVDI---VKK 765 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 E G R D+ R Sbjct: 766 AREEGYVETL-----------------------FHRRRYLPDIHAKNF---NLRSFAERT 799 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ M+ + ++L VHDE++ E P + Sbjct: 800 AMNTP------IQGSAADIIKVAMILMQQELKKANLQARMLLQVHDELIFEAPTEEIPIL 853 Query: 645 SMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 L +M S A +PLK E + Sbjct: 854 QKLVPSVMDSAVKLA--VPLKVESGFGPTW 881 >gi|49483932|ref|YP_041156.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252] gi|49242061|emb|CAG40760.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252] Length = 876 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 97/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59 ET S ++ + + + F + D + L Sbjct: 302 IET-SFDNVDFTSLKEATIHFELDGGNYLRNNILKFSLFTGEKHIVINADDIINYAELVS 360 Query: 60 ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 LEN + V +++ + V +DI ++ + + V + Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L Q K+ ++ + KG+ + D + + + K ++ E + ++E Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + + G DV + + + + L + + + + Sbjct: 475 LADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF L + T+ +T VL + P + R S+ + L Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ D R+ A +TGR S QN+P + Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635 Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S+ ++ AD + IE RVLA + ++ +AF G+D++ T Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V QV R K + + Y + L + + Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + ++ + Sbjct: 742 SFPGVKQYMSDIVKDAKALGFVETL----------------------------------- 766 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +RR +P + + R+ +NT Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646 +Q + DI+ M+ + ++L VHDE++ E P ++ + S Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + +PLK + + Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872 >gi|293376455|ref|ZP_06622684.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909] gi|292644877|gb|EFF62958.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909] Length = 878 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 92/662 (13%), Positives = 180/662 (27%), Gaps = 132/662 (19%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 ++ A +D + L + + + R L Sbjct: 331 HHANILGIAV-VNDEESYYVPFELAKQ-SEAFMTFLADEKIAKDIFDLKRSRVALMWQ-G 387 Query: 86 LDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 D+ L+ + K V + +E + KG Sbjct: 388 FDLRGVA-FDLLLATYIINPTNVSNEFKKVAMSYDYDDVLYDE-----EVYGKGAKRAIA 441 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 + H K + +L E L + + G +D+ Sbjct: 442 EESQIARHSIDIATAVLKLKETALEQLKEQDQLTLFEEMEMPLADVLAEMEFNGMALDLK 501 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + Q + T L+ E+ + ++L LF + L + T+ +T Sbjct: 502 TLDEMGQDLKGRITALENEIYEHAGMS-FNINSPKQLGEVLFDKLSLPVIKKTKTGYSTN 560 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL P + R ++ + L +A SDG++ ++TGR Sbjct: 561 ADVLEKLSDAHPIIKSIMEYR-TLTKLYSTYIEGLKKACYSDGKVHTIFNQA-LTQTGRL 618 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P +R + EG ++ Sbjct: 619 SSIEPNLQNIPIRLEEGR-------------------------LIRKAFVPSEEGWVILG 653 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R+LA ++ + ++AF+ GED++ T F V+ ++T D R K + Sbjct: 654 ADYSQIELRILAHISNTESLIEAFKEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAIN-- 711 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ + Sbjct: 712 ------------FGIIYGMS------------------------------AFGLSENLNI 729 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 ++ + + +S +++ + +G A Sbjct: 730 TQKEAKKYIDHYLETYSGINQYM---EDTVKDAKFHGYATTLFN---------------- 770 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R ++ L R +Q + DI+ + M++ Sbjct: 771 -------RRRYIPELSQKNYALRQF---GERTAMNAP------IQGTAADIIKKAMIDVA 814 Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 A ++L VHDE++ E P + L M +PLKA+ Sbjct: 815 NAMKEKQVKSRLLLQVHDELIFEVPQEELDLMIELVTKTMEDVVK--LQVPLKADYSYGP 872 Query: 672 RY 673 + Sbjct: 873 TW 874 >gi|116620469|ref|YP_822625.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076] gi|116223631|gb|ABJ82340.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076] Length = 865 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 104/665 (15%), Positives = 186/665 (27%), Gaps = 171/665 (25%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 + LK LE+ V VA + L ++ Sbjct: 346 IGLARKRGEACAV----TSELIVELKPWLEDAAVVKVACDVKSAVLQLAR-LGIEARGFG 400 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 ++ N+ + R Sbjct: 401 -HDVMIYGFLLDADPG--------------------------------GCGLENQAHRRL 427 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVA 202 +L G + +T E++++L P E L + + G +D A Sbjct: 428 DLKLGGA-AEQHADITLELYEQLAPAIDGRGLRKLYDEIELPLTRVLARMERTGIRIDGA 486 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTET 257 L+ +++ + + L E+ +L + ++L LF + L T + Sbjct: 487 ELKRLSVLMESQISGLTAEIHALAG-KPFNISSPQQLGKVLFEDLNLPAPVKYGKGKTIS 545 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRT 316 T VL +V R ++ ++ L ++ GRL + GA+ T Sbjct: 546 TAADVLDELAAEHEIVRKVLEYRQ-LTKLKGTYVDALPALIDPATGRLHTSFNQTGAA-T 603 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + E +R+ + +G KL Sbjct: 604 GRLSSSNPNLQNIPIRTSLGRE-------------------------IRAAFVPRDGWKL 638 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 +VAD + IE R+LA M+G++ ++AF GED++ T A V P VT + R K + Sbjct: 639 LVADYSQIELRLLAHMSGDELLVQAFREGEDIHTRTAAEVMGVPPLMVTPEARRDAKAVN 698 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ A Sbjct: 699 F--------------GIVYGISAFGLAAQ------------------------------L 714 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 ER K + ++ V E +T Sbjct: 715 GIGRAEAERYIKNYFARYVGVKRFIEETIAEVRKT------------------------- 749 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 + GR ++ R + +Q + D++ M+ Sbjct: 750 -GVTKTLFGRERPIPEINGRNP---NARGFAERTA------VNSPLQGTAADLIKLAMVR 799 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYE 669 A ++L VHDE+V E P + S + M +PL + Sbjct: 800 IDAALAAGGFQAAMLLQVHDELVFECPPEELDEVSRMVKREMEGACE--LKVPLVVDVGS 857 Query: 670 SKRYR 674 +R Sbjct: 858 GDNWR 862 >gi|332088061|gb|EGI93186.1| DNA-directed DNA polymerase [Shigella boydii 5216-82] Length = 975 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 176/452 (38%), Positives = 252/452 (55%), Gaps = 15/452 (3%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 4 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 62 Query: 62 ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + + HNS+F+RTVL+ L P+ RW T+V A ++GLP +L + E L + Sbjct: 63 AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQ 122 Query: 121 QK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K +EGK LI FCK R H E WR F Y D+ RE++KRL Sbjct: 123 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 182 Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + + EL W+ DQ INDRG C+D+ LA + VD E+ +L + + +T G V ++ Sbjct: 183 WNYQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 242 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + L + G+ L D+ +T +R ++ L ++ R +AS ++ K L+ Sbjct: 243 RDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRQQASTTSTSKYKALM 301 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353 + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L Sbjct: 302 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLF 361 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDL 408 + +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF DL Sbjct: 362 DNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDL 421 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 Y YA+++ + +VTKDQR IGKV+ELA Sbjct: 422 YKLAYAKAYGIEVERVTKDQRQIGKVLELACI 453 Score = 194 bits (492), Expect = 6e-47, Method: Composition-based stats. Identities = 82/267 (30%), Positives = 131/267 (49%), Gaps = 11/267 (4%) Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + P + G ++ GY GG AF A L+L+ A+ N + Sbjct: 714 YDIAHAGPRNRFTIKTDSGHLIVHNCGYGGGVSAFITFALVYSLDLDELANAALPNIPRD 773 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 +A+++ + + + + AC+ +K+ WR+ H + W EL + I Sbjct: 774 VIREAKSWYYESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTVRTAIA 832 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTRQLT 588 + + + +++D L + LPSGR++ Y N +Y+ N+ +R+ Sbjct: 833 TPQKTL-----YCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRKWQ 887 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY 648 R TYGGKL EN+ QA +RD+LA M AGY IVLTVHDEI+ E PD+ +++A + Sbjct: 888 RLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEIISEAPDSPDYSAEHVS 947 Query: 649 HLMTSNPSWAKGLPLKAEGYESKRYRK 675 L+ + P WA +PL A G+ES RYRK Sbjct: 948 QLLATVPDWATSIPLNAGGFESYRYRK 974 >gi|116617825|ref|YP_818196.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096672|gb|ABJ61823.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 893 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 92/656 (14%), Positives = 188/656 (28%), Gaps = 129/656 (19%) Query: 33 FAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 F + V + ++ + LK +EN + N + VL L + Sbjct: 348 IGFAIGNPEVGYYASRDISLLQTEELKSVIENEQILKNVFNVKAQL-VLFKRLGLALKGV 406 Query: 92 RWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 +++A + L + + + E+ A+F L Sbjct: 407 N-FDFILVAYLLDTVANDNVLSTLAQRFDVYLAPDEDIYGKGAKFTVPTDTNLLLSHVAH 465 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 ++L + ++ + E L ++ + +G V+ Sbjct: 466 KADGLFKLEKP-----AFTELKQHEQTHLYTDIELPLAFVLADMEYQGIKVNPEYLRNKG 520 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 + + + + + G + ++L LF + GL + T+ +T VL Sbjct: 521 KDLSERIADIQSAIY-IEAGEEFNLNSPKQLGVLLFEKMGLPVIKKTKTGYSTAVDVLEK 579 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 P + R ++ ++ L+ + T ++TGR S Sbjct: 580 LAPQAPIVDHILQYRQ-LAKLKSTYIDGLLSVIYPKDSKIHTRFLQTLTQTGRLSSVDPN 638 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGI 384 QN+P S +R+ + S ++ AD + I Sbjct: 639 LQNIPMRSEEGR-------------------------LIRTAFVPSHPNWQIFGADYSQI 673 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RVLA + G++ KAF GED++ T F +A V + Sbjct: 674 ELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAV-------- 725 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 G++ A+ + Sbjct: 726 -----NFGIVYGISDYGLAN------------------------------NLGISRAEAK 750 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 R + Q+ ++ E N + + + + + Sbjct: 751 RFIDTYFQEFPQIHEWMNTIKTFAHE--------------------------HGYVETIA 784 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---- 620 R D+ R +Q + DI+ M+ +A Sbjct: 785 HRRRYLPDIQAKNF---NLRSFAERTAMNSP------IQGSAADIIKIAMIKVNEALREN 835 Query: 621 --GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ ETP + + + ++M S A +PLK + + + Sbjct: 836 NLQARMLLQVHDELIFETPVDEIDELTEVVTNVMDSAV--ALDVPLKVDAHHGDTW 889 >gi|256847515|ref|ZP_05552961.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] gi|256716179|gb|EEU31154.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] Length = 887 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 96/657 (14%), Positives = 201/657 (30%), Gaps = 142/657 (21%) Query: 39 DHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 W DP + +KE LEN + N+ L +++ + Sbjct: 347 GSQGHWW-VSQDPELLSAPEIKELLENPKIKKDTFNAKAHYVALHRQ-GIELHGNG-FDF 403 Query: 97 LVLARSNGLPSALKAVGE------ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 L+++ +G+ ++ S + GK + + K Sbjct: 404 LLVSYLLNTNDNSNDLGQLAHEHNYYQVQSDEEVYGKGKSRHLPDDRSVFFTHLVQKGMA 463 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLN 208 E + +T ++ + + E+ L ++ + G VD + Sbjct: 464 IEQLKH---------PLTDQLHENEQWPLYTDIERPLSHVLAKMEIAGVHVDATTLKEMG 514 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 + +L+Q + + + ++L T LF + L + T+ +T VL Sbjct: 515 SKLKERLAELEQAIYNEAG-EEFNINSTKQLGTILFEKMKLPVIKKTKTGYSTSVEVLEK 573 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + P + R S+ + L++ ++S + T ++TGR S Sbjct: 574 LQGRAPIIDNILVYRQ-ISKIQSTYITGLLKVIHSSDQKIHTRYLQTLTQTGRLSSVDPN 632 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGI 384 QN+P + +R S G K+ +D + + Sbjct: 633 LQNIPVRLEEGRK-------------------------IRRAFKPSQPGWKIFSSDYSQV 667 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN-VAPAQVTKDQRAIGKVMELALGYQG 443 E RVLA + G++ + F G+D++ +T R F+ + +VT + R K + + Y Sbjct: 668 ELRVLAHVTGDRNLQQDFIDGKDIHESTARRIFHLLPGEKVTPNMRRQAKAVNFGIVYGI 727 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + +++ S +E+ + + + + + + Sbjct: 728 S-----DYGLSQNIHVTRKQAHEFIQSYFKEFPGVQEYIENIVKLAKKQGYVETLT---- 778 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 +RR +P + K Sbjct: 779 -------------------------------------HRRRYLPEINSKNFSRRSF---- 797 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---- 619 R+ +NT +Q + DI+ M+N + Sbjct: 798 -----------AERTAMNT------------------PIQGSAADIIKIAMINMNEQLQK 828 Query: 620 --AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L +HDE++ E P+ + L +M S +PLK E + Sbjct: 829 AGLKAKMLLQIHDELIFEAPEEEIDQLRELVPKVMDSAVK--LDVPLKVESKVGDTW 883 >gi|257425805|ref|ZP_05602229.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053] gi|257428471|ref|ZP_05604869.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322] gi|257431105|ref|ZP_05607482.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397] gi|257433788|ref|ZP_05610146.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410] gi|257436704|ref|ZP_05612748.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876] gi|282904261|ref|ZP_06312149.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160] gi|282906086|ref|ZP_06313941.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260] gi|282914486|ref|ZP_06322272.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899] gi|282924832|ref|ZP_06332498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101] gi|283958441|ref|ZP_06375892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97] gi|293503564|ref|ZP_06667411.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424] gi|293510579|ref|ZP_06669284.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809] gi|293537121|ref|ZP_06671801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015] gi|295428261|ref|ZP_06820890.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590776|ref|ZP_06949414.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus MN8] gi|257271499|gb|EEV03645.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053] gi|257275312|gb|EEV06799.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322] gi|257278053|gb|EEV08701.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397] gi|257281881|gb|EEV12018.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410] gi|257284055|gb|EEV14178.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876] gi|282313198|gb|EFB43594.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101] gi|282321667|gb|EFB51992.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899] gi|282331378|gb|EFB60892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260] gi|282595879|gb|EFC00843.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160] gi|283790590|gb|EFC29407.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97] gi|290919966|gb|EFD97034.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015] gi|291095230|gb|EFE25495.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424] gi|291466470|gb|EFF08991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809] gi|295127661|gb|EFG57298.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575662|gb|EFH94378.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus MN8] gi|315195594|gb|EFU25981.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS00] Length = 876 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 97/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59 ET S ++ + + + F + D + L Sbjct: 302 IET-SFDNVDFTSLKEATIHFELDGGNYLRNNILKFSLFTGEKHIVINADDIINYAELVS 360 Query: 60 ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 LEN + V +++ + V +DI ++ + + V + Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L Q K+ ++ + KG+ + D + + + K ++ E + ++E Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + + G DV + + + + L + + + + Sbjct: 475 LADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF L + T+ +T VL + P + R S+ + L Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ D R+ A +TGR S QN+P + Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635 Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S+ ++ AD + IE RVLA + ++ +AF G+D++ T Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V QV R K + + Y + L + + Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + ++ + Sbjct: 742 SFPGVKQYMSDIVKDAKALGFVETL----------------------------------- 766 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +RR +P + + R+ +NT Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646 +Q + DI+ M+ + ++L VHDE++ E P ++ + S Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + +PLK + + Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872 >gi|312135240|ref|YP_004002578.1| DNA polymerase i [Caldicellulosiruptor owensensis OL] gi|311775291|gb|ADQ04778.1| DNA polymerase I [Caldicellulosiruptor owensensis OL] Length = 850 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 89/629 (14%), Positives = 186/629 (29%), Gaps = 144/629 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKA--CFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++E L++ V IV ++ + I ++ + + Sbjct: 350 IEEILKSESVKIV-----YDLKNMFHELYLENTDNIRNCEDVMIASYVLDSTRS------ 398 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + +L + M + K + + + + D+ + ++ Sbjct: 399 SYELETLFMSYLNTDLEAVKKDKKVTSVILLERLWDELS-------SLIDLNSCQFVYT- 450 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + E+ L + + G+ VD + ++ + L++++ + + Sbjct: 451 -----NIERPLIPILYEMEKAGFKVDRDALLQYTKEIESKILNLEKQIYQIAG-EWFNIN 504 Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF + L + T+ +T VL + + RM ++ Sbjct: 505 SPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMY-TKILTTYC 563 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++A+N T + TGR + QN+P Sbjct: 564 QGLLQAINPSSGRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGR-------------- 609 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R I EG L+ AD + IE R+LA ++ ++ + AF+ D++ Sbjct: 610 -----------LIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNVDIHSQ 658 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT + R+ K + + G++ Sbjct: 659 TAAEIFGVDIDDVTPEMRSQAKAVNFGIV--------------YGISD------------ 692 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 A + + +++ +V E L + Sbjct: 693 ------------------YGLARDIKISRKEAAEFINRYFERYPKVKEY---LDNIVKFA 731 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 ENG + R +D+ + T R Sbjct: 732 RENGYVLTLFN-----------------------RKRYIKDINSTN---RNTRSYAERIA 765 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ M+ + I+L VHDE++ E P ++ Sbjct: 766 MNSP------IQGSAADIMKLAMIKVYQKLKENNLKAKIILQVHDELLIEAPYEEKDIVK 819 Query: 646 MLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + M + A +PL E E + Sbjct: 820 RIVKTEMENAV--ALKVPLVVEVKEGLNW 846 >gi|326791154|ref|YP_004308975.1| DNA polymerase I [Clostridium lentocellum DSM 5427] gi|326541918|gb|ADZ83777.1| DNA polymerase I [Clostridium lentocellum DSM 5427] Length = 882 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 101/689 (14%), Positives = 200/689 (29%), Gaps = 142/689 (20%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL--WDCVHDPVMPQVLKEALENT 64 DFE + Y + + V WD VL E LE+ Sbjct: 310 DFEKFLQESKDQMVGIAYFVEDNTLGLGVAI-GERVGYSEWDLTDTEA-KAVLIEFLESA 367 Query: 65 DVTIVAH---NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 + H N E LK L+ T + A + + E +L Sbjct: 368 TYQKIVHDSKNFKHEL--LKVGLGLN---GVCFDTFIAAYLLHPTNKSYDLAELEELFIN 422 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-- 179 K + L+ + + E G+ + ++VT + + L+ + Sbjct: 423 K----QSLMNLENLLGKGKSQKTWLQLEDEERINNLGKRSQLALSVTEAMKEALQEQNMT 478 Query: 180 ----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 E L + + G VD + + + L + + Sbjct: 479 RLFYDIEMPLIDVLFDMEVEGIKVDPEGLRSYGEELQGLLDTLTTSIYEAAG-ESFNINS 537 Query: 236 LEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L LF + G+ T+ +T VL + K P Q+ R ++ ++ Sbjct: 538 PKQLGVILFEKLGIPCAKKTKTGYSTAAEVLEALKNDYPIVAQILEYRQY-AKLKSTYVD 596 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L+ + ++ T + TGR S QN+P ++ Sbjct: 597 GLLNVLTEQNKIHSTFNQ-TITATGRLSSTEPNLQNIPVKFEMGKK-------------- 641 Query: 353 DPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R + S E + D + IE RVLA M+G+ +KAF+ D++ Sbjct: 642 -----------IRQLFVPSSENHIFLDGDYSQIELRVLAHMSGDPTLIKAFKENIDIHAL 690 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T ++ F+V VT QR+ K + + G++ Sbjct: 691 TASQVFHVPFEDVTSMQRSNAKAVNFGIV--------------YGIS------------- 723 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + ++ + +K+ + +E+ Q Sbjct: 724 -----------------AFALSEDLKISQKEAQKYIDGYFEKYPCIKAYLDEIIDFAMQ- 765 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 N + R ++ + + ++ Sbjct: 766 -------------------------NGYVETLYHRKREIPEILASNYNMREFGKR----- 795 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645 +Q S DI+ M+ + ++LTVHDE++ + + Sbjct: 796 ----VAMNTPIQGTSADIIKIAMIRVHQKLKEHSLKSKLILTVHDELLIDAHKDEVEIVK 851 Query: 646 M-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 L M +PL + ++ + Sbjct: 852 KLLKEEMEHAAD--LSVPLVVDVHQGANW 878 >gi|32423736|gb|AAP81263.1| DNA polymerase type I [Bacteroidetes bacterium endosymbiont of Bemisia tabaci] Length = 939 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 91/695 (13%), Positives = 190/695 (27%), Gaps = 166/695 (23%) Query: 10 TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----VHDPVMPQVLKEALENTD 65 T+ D+ G+ + D ++ AF + +L+ + TD Sbjct: 363 TKWAFDIATTGMDPHLAD--LLGIAFAYQPGTAYYIALPPNKAAAQPFLALLQPLFQRTD 420 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE-ALKLSSQK 122 V V HN V++ L I T++ + L + E L Sbjct: 421 VLKVGHNLKNALIVMQRH-GLSIAP-PLFDTMIAHGLVAADMDHHLTTLSEQYLNH---- 474 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182 + K Y + I+ ++ + Sbjct: 475 --------RSYLKPPNRAEK----------ESEGIKNYAGEGADLVLHIYPKIAQALREH 516 Query: 183 ----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L + + G +D+ TL ++ L +++ +L + Sbjct: 517 KVATLFYRVEMPLVQVLVAMELAGVSIDLPFLATLGSEMEPTTKALKEKIYTL-AQTTFN 575 Query: 233 SRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 ++L LF + L T+ T + +L+ K+ P + R + Sbjct: 576 IDSPKQLGVVLFEKLALHTKPMKTKGGQYATGEAILAKLSKVHPIVPLIMEYR-TWQKLR 634 Query: 288 VLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 ++ L ++ D RL T + TGR S Q +P + + L Sbjct: 635 STYVDALPTLLHPIDQRLHATYHQTVVT-TGRLSATGPNLQQIPIRTPTGRAL------- 686 Query: 347 PTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 R I +G L AD + IE R++A A + + AF++ Sbjct: 687 ------------------RKAFIPHQKGDCLFSADYSQIELRIMAAYAQDTTMIMAFQSD 728 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 +D++ T + F + R K+ + Y + Sbjct: 729 QDIHQITAQKLFKTVIVDQ--EMRQKAKIANFGIIYGISPFGLSE--------------- 771 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + +A+ + + ++ Sbjct: 772 ----------------------------RMEHLSRKEAAELIEAYFEAFPGIKTYIDDSI 803 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 E N + GR D+ + R Sbjct: 804 AHAE--------------------------ANGYVRTLLGRKRFLPDLYASNPTTRGVAR 837 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639 + +Q + +++ M++ K +++ VHDE+V P + Sbjct: 838 RN---------AINTPIQGSAAEMIKLAMIHIQDWLEKHKLSTKLIIQVHDELVFNVPRS 888 Query: 640 DEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + + LM + + +P+K + Sbjct: 889 EIADIQHHIPLLMATALPL-ENVPIKVNWNIGANW 922 >gi|282919455|ref|ZP_06327190.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427] gi|282317265|gb|EFB47639.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427] Length = 876 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 96/687 (13%), Positives = 204/687 (29%), Gaps = 137/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59 ET S ++ + + + F + D + L Sbjct: 302 IET-SFDNVDFTSLKEATIHFELDGGNYLRNNILKFSLFTGEKHIVINADDIINYAELVS 360 Query: 60 ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 LEN + V +++ + V +DI ++ + + V + Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L Q K+ ++ + KG+ + + + + K ++ E + ++E Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEVDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + + G DV + + + + L + + + + Sbjct: 475 LADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF L + T+ +T VL + P + R S+ + L Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ D R+ A +TGR S QN+P + Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635 Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S+ ++ AD + IE RVLA + ++ +AF G+D++ T Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V QV R K + + Y + L + + Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + ++ + Sbjct: 742 SFPGVKQYMSDIVKDAKALGFVETL----------------------------------- 766 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +RR +P + + R+ +NT Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646 +Q + DI+ M+ + ++L VHDE++ E P ++ + S Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + +PLK + + Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872 >gi|167040779|ref|YP_001663764.1| DNA polymerase I [Thermoanaerobacter sp. X514] gi|300914817|ref|ZP_07132133.1| DNA polymerase I [Thermoanaerobacter sp. X561] gi|307723949|ref|YP_003903700.1| DNA polymerase I [Thermoanaerobacter sp. X513] gi|166855019|gb|ABY93428.1| DNA polymerase I [Thermoanaerobacter sp. X514] gi|300889752|gb|EFK84898.1| DNA polymerase I [Thermoanaerobacter sp. X561] gi|307581010|gb|ADN54409.1| DNA polymerase I [Thermoanaerobacter sp. X513] Length = 872 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 91/693 (13%), Positives = 200/693 (28%), Gaps = 152/693 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 + + D + + AF F + V D + LKE Sbjct: 307 KLIAL------LQDSKSIAFYPLIYEGEIKKIAFSFGNDTV-YIDGFQ----IKDLKEIF 355 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 E H + V + ++ +++ T ++A + + LK Sbjct: 356 EKEKFEFTTHEIK-DFLVKLSYKGIECK-SKYMDTAIMAYLLNPSESNYDLDRVLK---- 409 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL--- 178 K L E K + +Y ++ ++L Sbjct: 410 -----KYLKVDVPSYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLREKLMNFIEE 464 Query: 179 -------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L + +++ G+ +D + L+Q ++ ++ ++ Sbjct: 465 MDMKRLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAGYQ-F 523 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L +LF + L + T+ +T VL + R ++ Sbjct: 524 NVNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNNIVNDIIEYRQ-LTKLKS 582 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 ++ + M+ + R+ + + + TGR S QN+P Sbjct: 583 TYIDGFLPLMDENNRVHSNFKQMV-TSTGRISSTEPNLQNIPIREEFGR----------- 630 Query: 349 SITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R I + +V AD + IE RVLA ++G++ +++F ED Sbjct: 631 --------------QIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNED 676 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +++ T + F V +VT + R + K + G++ + Sbjct: 677 IHLRTASEVFKVPMEKVTPEMRRVAKAVNF--------------GIIYGISDYGLS---- 718 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + + +++ V E ++ + Sbjct: 719 --------------------------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRF 752 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 ++ N ++ R ++ + T Q Sbjct: 753 AKE--------------------------NGYVITIMNRRRYIPEINSRNF---TQRSQA 783 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDE 641 R +Q + DI+ M+ ++L VHDE+V +T + Sbjct: 784 ERLAMNAP------IQGSAADIIKMAMVRVYNDLEKLKLKSKLILQVHDELVVDTYKDEV 837 Query: 642 FNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 + M + +PL E + Sbjct: 838 EIVKKILKDNMENVVQ--LKVPLVVEIGVGPNW 868 >gi|325842039|ref|ZP_08167576.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1] gi|325489761|gb|EGC92117.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1] Length = 878 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 92/662 (13%), Positives = 180/662 (27%), Gaps = 132/662 (19%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 ++ A +D + L + + + R L Sbjct: 331 HHANILGIAV-VNDEESYYVPFELAKQ-SEAFMTFLADEKIAKDIFDLKRSRVALMWQ-G 387 Query: 86 LDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 D+ L+ + K V + +E + KG Sbjct: 388 FDLRGVA-FDLLLATYIINPTNVSNEFKKVAMSYDYDDVLYDE-----EVYGKGAKRAIA 441 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 + H K + +L E L + + G +D+ Sbjct: 442 EESQIARHSIDIATAVLKLKETALEQLKEQDQLTLYEEMEMPLADVLAEMEFNGMALDLK 501 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + Q + T L+ E+ + ++L LF + L + T+ +T Sbjct: 502 TLDEMGQDLKGRITALENEIYEHAGMS-FNINSPKQLGEVLFDKLSLPVIKKTKTGYSTN 560 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL P + R ++ + L +A SDG++ ++TGR Sbjct: 561 ADVLEKLSDAHPIIKSIMEYR-TLTKLYSTYIEGLKKACYSDGKVHTIFNQA-LTQTGRL 618 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P +R + EG ++ Sbjct: 619 SSIEPNLQNIPIRLEEGR-------------------------LIRKAFVPSEEGWVILG 653 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R+LA ++ + ++AF+ GED++ T F V+ ++T D R K + Sbjct: 654 ADYSQIELRILAHISNTESLIEAFKEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAIN-- 711 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ + Sbjct: 712 ------------FGIIYGMS------------------------------AFGLSENLNI 729 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 ++ + + +S +++ + +G A Sbjct: 730 TQKEAKKYIDHYLKTYSGINQYM---EDTVKDAKFHGYATTLFN---------------- 770 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R ++ L R +Q + DI+ + M++ Sbjct: 771 -------RRRYIPELSQKNYALRQF---GERTAMNAP------IQGTAADIIKKAMIDVA 814 Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 A ++L VHDE++ E P + L M +PLKA+ Sbjct: 815 NAMKEKQVKSRLLLQVHDELIFEVPQEELDLMIELVTKTMEDVVK--LQVPLKADYSYGP 872 Query: 672 RY 673 + Sbjct: 873 TW 874 >gi|38146979|gb|AAR11874.1| DNA polymerase I [Thermoanaerobacterium sp. AZ3B.1] Length = 833 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 94/682 (13%), Positives = 198/682 (29%), Gaps = 146/682 (21%) Query: 13 PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72 D + + AF F + V D + LKE E + H Sbjct: 273 LQDSRNIAFYPLIYEGEIKKIAFSFGSNTV-YIDIFQ----IEDLKEIFEKEEFEFTTHE 327 Query: 73 SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132 + V + ++ ++I T ++A + + LK K L Sbjct: 328 IK-DFLVKLSYKGIECK-SKYIDTAIMAYLLNPSESNYDLDRVLK---------KYLKVD 376 Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL----------SSKE 182 E K + +Y ++ ++L E Sbjct: 377 VPSYEEVFGKGRDKKKLEEIREDVLADYICSRCVHLFDLREKLMNFIEEMDMKKLLLEIE 436 Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 L + +++ G+ +D + L+Q +D ++ ++ + ++L + Sbjct: 437 MPLVEVLKSMEVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEAGYQ-FNVNSPKQLSEF 495 Query: 243 LFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF + L + T+ +T VL + R ++ ++ + M+ Sbjct: 496 LFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNDVVSDIIEYRQ-LTKLKSTYIDGFLPLMD 554 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 + R+ + + + TGR S QN+P Sbjct: 555 ENNRVHSNFKQMV-TATGRISSTEPNLQNIPIREEFGR---------------------- 591 Query: 360 ISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R I + +V AD + IE RVLA ++G++ +++F ED+++ T A F Sbjct: 592 ---QIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFK 648 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 V +VT + R K + G++ + Sbjct: 649 VPMEKVTPEMRRAAKAVNF--------------GIIYGISDYGLS--------------- 679 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 + + + +++ V E ++ + ++ Sbjct: 680 ---------------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKE-------- 716 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 N + R ++ + T Q R Sbjct: 717 ------------------NGYVTTIMNRRRYIPEINSRNF---TQRSQAERLAMNAP--- 752 Query: 599 ENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASML-YHLM 651 +Q + DI+ M+ + ++L VHDE+V +T + + M Sbjct: 753 ---IQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHDELVVDTYKDEVDIVKKILKENM 809 Query: 652 TSNPSWAKGLPLKAEGYESKRY 673 + +PL E + Sbjct: 810 ENVIK--LKVPLVVEIGIGPNW 829 >gi|256750990|ref|ZP_05491873.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1] gi|256750100|gb|EEU63121.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1] Length = 872 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 91/693 (13%), Positives = 199/693 (28%), Gaps = 152/693 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 + + D + + AF F + V D + LKE Sbjct: 307 KLIAL------LQDSKSIAFYPLIYEGEIKKIAFSFGNDTV-YIDGFQ----IKDLKEIF 355 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 E H + V + ++ +++ T ++A + + LK Sbjct: 356 EKEKFEFTTHEIK-DFLVKLSYKGIECK-SKYMDTAIMAYLLNPSESNYDLDRVLK---- 409 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL--- 178 K L E K + +Y ++ ++L Sbjct: 410 -----KYLKVDVPSYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLREKLMNFIEE 464 Query: 179 -------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L + +++ G+ +D + L+Q ++ ++ ++ Sbjct: 465 MDMKRLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAGYQ-F 523 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L +LF + L + T+ +T VL + R ++ Sbjct: 524 NVNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNNIVNDIIEYRQ-LTKLKS 582 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 ++ + M+ + R+ + + + TGR S QN+P Sbjct: 583 TYIDGFLPLMDENNRVHSNFKQMV-TSTGRISSTEPNLQNIPIREEFGR----------- 630 Query: 349 SITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R I + +V AD + IE RVLA ++G++ +++F ED Sbjct: 631 --------------QIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNED 676 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +++ T + F V +VT + R K + G++ + Sbjct: 677 IHLRTASEVFKVPMEKVTPEMRRAAKAVNF--------------GIIYGISDYGLS---- 718 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + + +++ V E ++ + Sbjct: 719 --------------------------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRF 752 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 ++ N ++ R ++ + T Q Sbjct: 753 AKE--------------------------NGYVITIMNRRRYIPEINSRNF---TQRSQA 783 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDE 641 R +Q + DI+ M+ ++L VHDE+V +T + Sbjct: 784 ERLAMNAP------IQGSAADIIKMAMVRVYNDLEKLKLKSKLILQVHDELVVDTYKDEV 837 Query: 642 FNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 + M + +PL E + Sbjct: 838 EIVKKILKDNMENVVQ--LKVPLVVEIGVGPNW 868 >gi|302333355|gb|ADL23548.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus JKD6159] Length = 876 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59 ET S ++ + + A + F + D L Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVS 360 Query: 60 ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 LEN + V +++ + V +DI ++ + + V + Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLEIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L Q K+ ++ + KG+ + D + + + K ++ E + ++E Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + + G DV + + + + L + + + + Sbjct: 475 LADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF L + T+ +T VL + P + R S+ + L Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ D R+ A +TGR S QN+P + Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635 Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S+ ++ AD + IE RVLA + ++ +AF G+D++ T Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V QV R K + + Y + L + + Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + ++ + Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +RR +P + + R+ +NT Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646 +Q + DI+ M+ + ++L VHDE++ E P ++ + S Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + +PLK + + Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872 >gi|6730045|pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp gi|157831628|pdb|1KTQ|A Chain A, Dna Polymerase Length = 543 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + +VL L +P ++LA + + V Sbjct: 66 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 106 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 GE E +R + R L+G R ++ E+ L + + Sbjct: 107 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 157 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250 G +DVA L+ V E +L+ E+ L + ++L+ LF E GL Sbjct: 158 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 216 Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 E + +T VL + ++ P ++ R ++ ++ L + ++ GRL Sbjct: 217 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 275 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 276 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 309 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V V Sbjct: 310 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 369 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 370 RRAAKTINF--------------GVLYGMS------------------------------ 385 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + + Q +V + + E+ G Sbjct: 386 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 434 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 435 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 470 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE+V E P + L +M A +PL Sbjct: 471 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 528 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 529 EVEVGIGEDW 538 >gi|323704288|ref|ZP_08115867.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11] gi|38146977|gb|AAR11873.1| DNA polymerase I [Thermoanaerobacterium thermosulfurigenes] gi|323536354|gb|EGB26126.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11] Length = 867 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 92/688 (13%), Positives = 214/688 (31%), Gaps = 150/688 (21%) Query: 10 TRSPIDLTK---CGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDV 66 T L K + + D + +F D + + L N + Sbjct: 302 TYVKNVLGKFDVLSLYPFIYDGKIKAVSFACGDGS-FFVEIDDYDNF-----KLLNNDKL 355 Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG 126 T++ H+ + V + +++ + + T ++ + + LK Sbjct: 356 TLIGHDLK-DFLVNISYCGIELN-CKILDTAIMTYLLNPSESNYDISRVLK--------- 404 Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ--- 183 K L + K +L +Y + ++ +L + + Sbjct: 405 KYLKEDLQNIDDIVGKGRNKKSYDDIDKKLLVDYMCSAASNLSKLKDKLMSFIKEMEMED 464 Query: 184 -------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L + +++ G+ +D + ++++ +D + K+ +++ + Sbjct: 465 LLKNVEIPLIEVLKSMEVYGFTLDKDVLRSISKEIDEKTDKIVKDIYDAAGY-EFNINST 523 Query: 237 EKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L +LF + L T+ +T VL+ ++ R + ++ Sbjct: 524 KQLSEFLFDKLNLPAIKKTKTGYSTDMEVLAELIPYNDIVGEIIEYRQ-LMKLKSTYIDG 582 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 + M+ + R+ T + A+ TGR S QN+P Sbjct: 583 FIPIMDENNRVHSTFKQTVAA-TGRISSTEPNLQNIPVREEFGRR--------------- 626 Query: 354 PDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R ++S E ++ AD + IE RVLA ++ ++ +++F ED+++ T Sbjct: 627 ----------IRKAFVSSYEDGLIISADYSQIELRVLAHLSEDEKLIESFLNNEDIHLRT 676 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 + F V+ +VT + R K + + Y + L ++ ++ Sbjct: 677 ASEVFKVSKEEVTSEMRRRAKAVNFGIVYGIS-----DYGLSKDLKISRKEAKEYIDNYF 731 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 + ++ +N+ + + E+ Sbjct: 732 DRYKGVKNYIDSIVKFAKENGYVTTI---------------------------------- 757 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 +RR +P + K R +NT Sbjct: 758 -------LNRRRYIPEINSKNFNQRSF---------------GERMAMNT---------- 785 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM 646 +Q + DI+ M+ ++L VHDE++ +T + Sbjct: 786 --------PIQGSAADIIKMSMVKVYNELKERGLKSRLILQVHDELIIDTHPDEVEIVKE 837 Query: 647 -LYHLMTSNPSWAKGLPLKAEGYESKRY 673 L +M + +PL + + K + Sbjct: 838 LLKSIMENIIK--LKVPLVVDIGQGKNW 863 >gi|5822373|pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 539 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + +VL L +P ++LA + + V Sbjct: 63 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 103 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 GE E +R + R L+G R ++ E+ L + + Sbjct: 104 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 154 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250 G +DVA L+ V E +L+ E+ L + ++L+ LF E GL Sbjct: 155 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 213 Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 E + +T VL + ++ P ++ R ++ ++ L + ++ GRL Sbjct: 214 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 272 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 273 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 306 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V V Sbjct: 307 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 366 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 367 RRAAKTINF--------------GVLYGMS------------------------------ 382 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + + Q +V + + E+ G Sbjct: 383 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 431 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 432 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 467 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE+V E P + L +M A +PL Sbjct: 468 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 525 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 526 EVEVGIGEDW 535 >gi|94971505|ref|YP_593553.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345] gi|94553555|gb|ABF43479.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345] Length = 929 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 91/671 (13%), Positives = 190/671 (28%), Gaps = 174/671 (25%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 V A + + + +V++ AL + V H++ L Sbjct: 406 PQVTSVALSSREGAARAVELKGESG--EVVRRALADPTVPKAVHDAK-----AAMHAGLP 458 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + T++ +L + Sbjct: 459 LESVE-HDTMLYEYLLDPTY------TTYRLPDVVL-------------RRLNLKLAGTL 498 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGY 197 P +T + +L ++ L + + G Sbjct: 499 PEA--------------ADMTHRLTTKLHKLVEDGGLMKVYEDIDRPLVTVLYAMEAAGV 544 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE----- 252 +D + ++ + + L +++ L+ + ++L LF + L Sbjct: 545 KLDCDVLAEMSTRLQRDADALARKIYGLSGQ-EFNINSPKQLGDVLFNKLNLPKPVKYGK 603 Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFL 311 T +T VL V R ++ ++ L ++ GRL T Sbjct: 604 GKTISTAVDVLEGLAGEHEVPKLVLEYRQ-FTKLKSTYVDALPNLCHAGTGRLHTTFAQA 662 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 A+ TGR S QN+P + E +R+ +A Sbjct: 663 -ATSTGRLSSVNPNLQNIPIRTELGRE-------------------------IRAAFVAE 696 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 +G L+ AD + IE R+LA + ++ + A+ D++ T + F V P + + R Sbjct: 697 KGNVLLAADYSQIELRLLAHFSQDRLLVDAYNNDRDIHALTASEVFGVPPMMIDAEHRRR 756 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + G++ + + ++ Sbjct: 757 AKAVNFGIV--------------YGISPFGLSQQLGIDT--------------------- 781 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 +R +++ +++S V E N + + + + Sbjct: 782 ---------KESKRYIESYFERYSGVREWLNSVLEQVRKDEK------------------ 814 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + GR D+ + R T Q + D++ Sbjct: 815 --------VSTLFGRIRPIPDIHSRNP---NLRGFAERTATNTPL------QGTAADLIK 857 Query: 612 EGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN-PSWAKGLPL 663 M+ K ++L VHDE+V E P + +++ M + P +PL Sbjct: 858 LAMIRIHRDLIERKLKTRMLLQVHDELVFEVPQAEVEEVRALVQDRMENVHPE--LTVPL 915 Query: 664 KAEGYESKRYR 674 K + K +R Sbjct: 916 KVDVGVGKNWR 926 >gi|291277587|ref|YP_003517359.1| DNA polymerase I [Helicobacter mustelae 12198] gi|290964781|emb|CBG40637.1| DNA polymerase I [Helicobacter mustelae 12198] Length = 904 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 108/698 (15%), Positives = 207/698 (29%), Gaps = 166/698 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------PVMPQVL 57 + D ET L ++ F+F FD HD V + Sbjct: 341 IAYDCETNGLDAL----------QARLVGFSFCFDGIHGYYVPISHDYLGVGKQVDTKDA 390 Query: 58 KEALENT-DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 K A+E IV HN F+ + KA FNL P +++LA S + L Sbjct: 391 KRAIEKIFSHPIVGHNLKFDLMIAKANFNLT-PKREIQDSMLLAYLLDSASMMG-----L 444 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + +K GK++IA + + + K EY D + +RL+ Sbjct: 445 DILMEKF-FGKKMIAY-------DEVVKKGKTFGDVDLERASEYASEDAVACFCLQERLK 496 Query: 177 PLSSKEQ-------------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 ++ + + +G +DV L + + ++ ++E+ Sbjct: 497 EELQAKRCAHLLELAKDLEYPFIEVLADMEYQGIKIDVEWFEALKESLSEALSQKEEEIF 556 Query: 224 SLTYGLVSSSRCLEKLKTWLFLET---GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 + + ++L LF + GL +T ++ L K P + Sbjct: 557 AH-AKQNFNINSPKQLSRVLFDDLKLRGLRRVKGGYSTDEKTLEELKDSHPIIP-ILMEY 614 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + +++ + ++ + G + TGR S QN+P + + + Sbjct: 615 REIFKLKNTYAEPILKLRTKENKIHTSFSQTGTT-TGRLSSRSPNLQNIPVRTEAGK--- 670 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R IA GKKL+ D + IE R+LA + +Q L Sbjct: 671 ----------------------QIRRGFIADAGKKLISVDYSQIELRLLAHFSQDQELLD 708 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF D+++ T F + K++R I K + L Sbjct: 709 AFRKDLDIHLRTAQMVFG----EDAKNKRHIAKTINFGLI-------------------- 744 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + T + + V + Sbjct: 745 ------------------------YGMGTRKLSQTLKISNTEAKEYIDRYFASFPTVRQF 780 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + + RR + + L Sbjct: 781 LRTEEEQILR--RGYAQTLLGHRRYFNFKGVGDFMRSNFLR------------------- 819 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHDEIVCET 636 + I Q + D++ M +G ++L VHDE++ ++ Sbjct: 820 ---------------EGINAIFQGSAADLMKLSMNKIYQTFQNSGVKMLLQVHDELIFQS 864 Query: 637 P-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P + E A + ++M +PL+ + + Sbjct: 865 PEEEAEDAAREIENIMNGVYE--LRVPLRCNVAIGQNW 900 >gi|258515120|ref|YP_003191342.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771] gi|257778825|gb|ACV62719.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771] Length = 755 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 110/705 (15%), Positives = 203/705 (28%), Gaps = 133/705 (18%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-LWDCVHD--------PV 52 + +D ET G+ Y + ++ +F H Sbjct: 138 DEIAVDTETT--------GLDVY--NDVIVGLSFTLPKADYHVYIPVAHKVAGQQLSRRA 187 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSAL 109 + LK L + ++ + HNS ++ +L L + + T++ AL Sbjct: 188 VLTALKPILTDVNIGKILHNSKYDIHMLIRH-GLRLRGIK-HDTMIAMAVLNENEPTLAL 245 Query: 110 KAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 K + K +EL + Y D Sbjct: 246 KNLATKYGKYFGFEDKSYTYEELFGKTS--------------FAEIPLDAALVYAAKDTH 291 Query: 167 VTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 +T E++K E L + + G+ +D+ A + E Sbjct: 292 LTYELYKWQRQHLNQKESLRLIYDELENPLIDVCVDMEQAGFLIDMDFAMEYKAELKGEI 351 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-LTETTCQRVLSSNKKL--TPQ 272 L+ L + +L L+ + L + +T + L + Sbjct: 352 AGLEANLTEHFGDINF--NSPLQLAAVLYDKLKLPVIKGKERSTDVKTLKKLRDETKHEG 409 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + R ++ + L + + DG L G+ A+ TGR++ QNLP Sbjct: 410 IDVLLKYR-ELTKLLGTYVEALPQLIKKDGLLHGSFNQ-VATVTGRFASREPNLQNLPPR 467 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + R ++A E ++ D + IE RVLA M Sbjct: 468 A-------------------------------RRLIVAPEDSLILGVDFSQIEPRVLAHM 496 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA--IGKVMELALGYQGGAKAFQK 450 +G+ + + G+DLY T +R F V+ + D + + KV LA+ Y Sbjct: 497 SGDPHLQEPYLKGQDLYSTLASRVFKVSYEECGDDSKYRKMMKVGLLAVMYGTSMWTLAD 556 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 L + + D F E ++ + G Sbjct: 557 Q-----LGITVEEANQFIEDFFATYPDVYAFICATHEFAKQNEYVETLYGRK-------- 603 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 ++ +A + + VP Y + K LP + Sbjct: 604 -RRFPGHR------EKAIVYDKLATEICEILGTKAVPYDYWQYKK-----ELPVILRRQF 651 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 R V R +Q + DI+ ++N G I+ TVHD Sbjct: 652 RAVKGEV----------ERVR---RMAVNARIQGTAADIMKRALINLYNDGRKIIGTVHD 698 Query: 631 EIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E + + M + +P++ + S R+ Sbjct: 699 EALLIVNKNITLAEVEKIEACMIRSA--NLNVPIRVDTELSTRWG 741 >gi|149917649|ref|ZP_01906145.1| DNA polymerase I [Plesiocystis pacifica SIR-1] gi|149821431|gb|EDM80831.1| DNA polymerase I [Plesiocystis pacifica SIR-1] Length = 898 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 88/680 (12%), Positives = 171/680 (25%), Gaps = 155/680 (22%) Query: 28 VCVILFAFGFDDHPVELWDCVH----DPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 + A L+ LE+ + H+ L+ Sbjct: 336 GELAGLALSVGAGHGRFIPLHCEGGLGEAGLAKLRPWLEDPKRYKLGHDCKASWVALRR- 394 Query: 84 FNLDIPIHRWICTLVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 + + T++ + P L + + L + Sbjct: 395 KGVALAGI-VGDTMIESFLVEPNKLIPHRLDQLTKEY------------LQRTIPPQKRI 441 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLD 189 R K + +C V F + L ++ Sbjct: 442 LGSGKRLKRFSQLDAEALAPWCCTQVEAVAAAFVEIRERLDAEGHRDTLEQVSLPLSWVL 501 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G +D +++ KL++ + + + ++L LF E L Sbjct: 502 GQMELDGVAIDSEDLGKMSEEFGERLAKLEKTIFEIAG-REFNIASSKQLGAVLFDELEL 560 Query: 250 HLEDLTE---TTCQRVLSSNKKL--TPQ--AIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 + T+ +T VL P+ + + ++ + L A+N D Sbjct: 561 PVIKRTKTGYSTNAEVLERLAGKTKHPKHTIAKYLLEHRKLAKLINTYTDVLQAAVNPDS 620 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 A +GR Q P + + Sbjct: 621 GRIHATFQQTAGVSGRLITTEPDLQRTPIKTPEGKR------------------------ 656 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-- 420 VR + G KL+ AD + IE R+LA + + ++AF G D++ T A+ F V Sbjct: 657 -VRQAFVTRPGYKLISADWSQIELRLLAHFSSDAHLVEAFAKGLDVHARTAAQLFEVGGG 715 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 P +V+++QR G A+ G Sbjct: 716 PEKVSREQR--------------GVGKLVNFATIYG------------------------ 737 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + + + +S V + + Sbjct: 738 ------QGATALGQILKVPRKQAQAYIDGYFAYYSGVRDWLDGTMAQA------------ 779 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 + + GR ++ +N R Sbjct: 780 --------------NVDGFVETLLGRRRYIPELSSNNWQDRQA---GERIAANTP----- 817 Query: 601 IVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTS 653 +Q + DI M+ K ++L +HDE+V E P + + M S Sbjct: 818 -IQGSAADICKLAMLGIDRQLRAQKLTTRMLLQIHDELVFEAPVAEVEAVVAIVRGQMES 876 Query: 654 NPSWAKGLPLKAEGYESKRY 673 +PL + + Sbjct: 877 VVE--LRVPLVVDVGVGDTW 894 >gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus gi|5822350|pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 539 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + +VL L +P ++LA + + V Sbjct: 63 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 103 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 GE E +R + R L+G R ++ E+ L + + Sbjct: 104 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 154 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250 G +DVA L+ V E +L+ E+ L + ++L+ LF E GL Sbjct: 155 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 213 Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 E + +T VL + ++ P ++ R ++ ++ L + ++ GRL Sbjct: 214 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 272 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 273 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 306 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V V Sbjct: 307 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 366 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 367 RRAAKTINF--------------GVLYGMS------------------------------ 382 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + + Q +V + + E+ G Sbjct: 383 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 431 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 432 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 467 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE+V E P + L +M A +PL Sbjct: 468 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 525 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 526 EVEVGIGEDW 535 >gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I From T. Aquaticus Bound To A PrimerTEMPLATE DNA Length = 539 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + +VL L +P ++LA + + V Sbjct: 62 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 102 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 GE E +R + R L+G R ++ E+ L + + Sbjct: 103 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 153 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250 G +DVA L+ V E +L+ E+ L + ++L+ LF E GL Sbjct: 154 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 212 Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 E + +T VL + ++ P ++ R ++ ++ L + ++ GRL Sbjct: 213 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 271 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 272 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 305 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V V Sbjct: 306 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 365 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 366 RRAAKTINF--------------GVLYGMS------------------------------ 381 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + + Q +V + + E+ G Sbjct: 382 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 430 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 431 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 466 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE+V E P + L +M A +PL Sbjct: 467 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 524 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 525 EVEVGIGEDW 534 >gi|6730021|pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 538 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + +VL L +P ++LA + + V Sbjct: 61 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 101 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 GE E +R + R L+G R ++ E+ L + + Sbjct: 102 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 152 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250 G +DVA L+ V E +L+ E+ L + ++L+ LF E GL Sbjct: 153 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 211 Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 E + +T VL + ++ P ++ R ++ ++ L + ++ GRL Sbjct: 212 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 270 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 271 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 304 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V V Sbjct: 305 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 364 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 365 RRAAKTINF--------------GVLYGMS------------------------------ 380 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + + Q +V + + E+ G Sbjct: 381 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 429 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 430 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 465 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE+V E P + L +M A +PL Sbjct: 466 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 523 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 524 EVEVGIGEDW 533 >gi|6730032|pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus gi|157831580|pdb|1JXE|A Chain A, Stoffel Fragment Of Taq Dna Polymerase I gi|295789478|pdb|3LWL|A Chain A, Structure Of Klenow Fragment Of Taq Polymerase In Complex Wi Abasic Site gi|295789481|pdb|3LWM|A Chain A, Structure Of The Large Fragment Of Thermus Aquaticus Dna Pol In Complex With A Blunt-Ended Dna And Ddatp gi|300193253|pdb|3M8R|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus In A Closed Ternary Complex With Trapped 4'- Ethylated Dttp gi|300193256|pdb|3M8S|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus In A Closed Ternary Complex With Trapped 4'- Methylated Dttp gi|315113724|pdb|3OJS|A Chain A, Snapshots Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Processing C5 Modified Thymidines gi|315113727|pdb|3OJU|A Chain A, Snapshot Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Processing C5 Modified Thymidies Length = 540 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + +VL L +P ++LA + + V Sbjct: 63 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 103 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 GE E +R + R L+G R ++ E+ L + + Sbjct: 104 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 154 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250 G +DVA L+ V E +L+ E+ L + ++L+ LF E GL Sbjct: 155 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 213 Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 E + +T VL + ++ P ++ R ++ ++ L + ++ GRL Sbjct: 214 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 272 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 273 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 306 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V V Sbjct: 307 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 366 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 367 RRAAKTINF--------------GVLYGMS------------------------------ 382 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + + Q +V + + E+ G Sbjct: 383 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 431 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 432 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 467 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE+V E P + L +M A +PL Sbjct: 468 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 525 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 526 EVEVGIGEDW 535 >gi|227432296|ref|ZP_03914290.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351963|gb|EEJ42195.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 893 Score = 314 bits (804), Expect = 4e-83, Method: Composition-based stats. Identities = 92/656 (14%), Positives = 188/656 (28%), Gaps = 129/656 (19%) Query: 33 FAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 F + V + ++ + LK +EN + N + VL L + Sbjct: 348 IGFAIGNPEVGYYASRDISLLQTEELKSVIENEQILKNVFNVKAQL-VLFKRLGLALKGV 406 Query: 92 RWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 +++A + L + + + E+ A+F L Sbjct: 407 N-FDFILVAYLLDTVANDNVLSTLAQRFDVYLAPDEDIYGKGAKFAVPTDTNLLLSHIAH 465 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 ++L + ++ + E L ++ + +G V+ Sbjct: 466 KADGLFKLEKP-----AFTELKQHEQTHLYTDIELPLAFVLADMEYQGIKVNPEYLRNKG 520 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 + + + + + G + ++L LF + GL + T+ +T VL Sbjct: 521 KDLYERIADIQSAIY-IEAGEEFNLNSPKQLGVLLFEKMGLPVIKKTKTGYSTAVDVLEK 579 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 P + R ++ ++ L+ + T ++TGR S Sbjct: 580 LAPQAPIVDHILQYRQ-LAKLKSTYIDGLLSVIYPKDSKIHTRFLQTLTQTGRLSSVDPN 638 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGI 384 QN+P S +R+ + S ++ AD + I Sbjct: 639 LQNIPMRSEEGR-------------------------LIRTAFVPSHPNWQIFGADYSQI 673 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RVLA + G++ KAF GED++ T F +A V + Sbjct: 674 ELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAV-------- 725 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 G++ A+ + Sbjct: 726 -----NFGIVYGISDYGLAN------------------------------NLGISRAEAK 750 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 R + Q+ ++ E N + + + + + Sbjct: 751 RFIDTYFQEFPQIHEWMNTIKTFAHE--------------------------HGYVETIA 784 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---- 620 R D+ R +Q + DI+ M+ +A Sbjct: 785 HRRRYLPDIQAKNF---NLRSFAERTAMNSP------IQGSAADIIKIAMIKVNEALRKN 835 Query: 621 --GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ ETP + + + ++M S A +PLK + + + Sbjct: 836 NLQARMLLQVHDELIFETPVDEIDELTEVVTNVMDSAV--ALDVPLKVDAHHGDTW 889 >gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus'] gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus'] Length = 880 Score = 314 bits (804), Expect = 4e-83, Method: Composition-based stats. Identities = 96/661 (14%), Positives = 200/661 (30%), Gaps = 140/661 (21%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84 A + + + F D V + + + LKE LE+ + + N+ L C Sbjct: 338 ARNGKITEILYAFQDESVYSYKTEN-NKIADALKEILESETIEKLFINAKESSLALL-CA 395 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +++ + L+ S+L + E + F + + Sbjct: 396 GIEVKNISFE-PLLAYYLLQPSSSLPDL------EEIFSRELDIGMQEFSQDQILAVETI 448 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 + + + D+ E+ L + + G +D Sbjct: 449 KLFKLRDILIKKLKDDSLYDLFKNMEL------------PLIKVLAQMEYNGVKIDKDWL 496 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 L+ ++ + ++ L + ++L LF + GL + T+ +T Sbjct: 497 QQLSDKLEKRLEIITKKAHELAG-EDFNLNSPKQLGEILFEKLGLPVIKRTKTGYSTNAN 555 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + P + + ++ +++L +NS+ T + TGR S Sbjct: 556 VLEKLEGKHPIIP-LISEYRELAKLKSTYIDSLPPLINSETGKIHTSFNQMVTATGRLSS 614 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVAD 380 QN+P + E +R I S + L+ D Sbjct: 615 TNPNLQNIPIRTEEGRE-------------------------IRKAFIPSSDNMILLAVD 649 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RV A ++G++ +AF +G D++ T + F V QV+ + R KV+ Sbjct: 650 YSQIELRVFAHLSGDKRLKEAFNSGRDIHTETASEIFEVEAEQVSPNLRRHAKVINF--- 706 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 G++ + + Sbjct: 707 -----------GLAYGMSAYGLSQDLDI------------------------------PV 725 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + ++ S V + +E Q ++ Sbjct: 726 EEAQDYIDKYFERFSGVKKYMDETIQKVKE--------------------------KGYA 759 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK- 619 GR ++ ++ R VQ + DI+ + M++ Sbjct: 760 ETLYGRKRYIPEINSSN---YHRRSFAERSAINTP------VQGTAADIMKKSMLDVYDS 810 Query: 620 -----AGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +I+L VHDE+V E + D A+ ++ M + +PL + ++ + Sbjct: 811 LKDIDLEINILLQVHDELVFEVANKDLEKAALLIKDKMEAAAE--LDVPLLVDLQIAENW 868 Query: 674 R 674 R Sbjct: 869 R 869 >gi|282911317|ref|ZP_06319119.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|282325012|gb|EFB55322.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|312437852|gb|ADQ76923.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus TCH60] Length = 876 Score = 314 bits (804), Expect = 4e-83, Method: Composition-based stats. Identities = 97/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59 ET S ++ + + + F + D + L Sbjct: 302 IET-SFDNVDFTSLKEATIHFELDGGNYLRNNILKFSLFTGEKHIVINADDIINYAELVS 360 Query: 60 ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 LEN + V +++ + V +DI ++ + + V + Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L Q K+ ++ + KG+ + D + + + K ++ E + ++E Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + + G DV + + + + L + + + + Sbjct: 475 LADLELSLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF L + T+ +T VL + P + R S+ + L Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ D R+ A +TGR S QN+P + Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635 Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S+ ++ AD + IE RVLA + ++ +AF G+D++ T Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V QV R K + + Y + L + + Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + ++ + Sbjct: 742 SFPGVKQYMSDIVKDAKALGFVETL----------------------------------- 766 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +RR +P + + R+ +NT Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646 +Q + DI+ M+ + ++L VHDE++ E P ++ + S Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + +PLK + + Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872 >gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073] gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073] Length = 885 Score = 313 bits (803), Expect = 4e-83, Method: Composition-based stats. Identities = 93/662 (14%), Positives = 186/662 (28%), Gaps = 148/662 (22%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPV--MPQVLKEALE-NTDVTIVAHNSYFERTVLKAC 83 + + ++D V + + L+ L N + H++ Sbjct: 349 EAAAVAVGLAWEDG-VAVLGTAGIEPAALAGTLEPLLRVNP----IFHDAKRALVWFSNA 403 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECL 142 T+V ++ + E L+ + + EG + L Sbjct: 404 GAGVADPGG--DTMVAGYLLNPSASRHDLPELCLEHLNLALVEGDSPQLAAARRAAVIRL 461 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 R K V +++R+E L + + G V++ Sbjct: 462 LHRELA------------SKLQVAGMENLYRRVE------LPLTRVLGAMESYGVAVNME 503 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + ++ L + + L + ++L LF + GL T+ +T Sbjct: 504 TLDLMGIELEGGLAALTEAIYELAG-EEFNLNSPKQLAVILFEKLGLPPVKRTKTGFSTD 562 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL P A ++ R ++ ++ L +N T + TGR Sbjct: 563 AAVLEELACRHPIAAKLVEYRQ-LAKLKSTYVDGLKPLVNPRTGSLHTSFNQTVTATGRL 621 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P L R + G+ L+ Sbjct: 622 SSSEPNLQNIPVRLELGRRL-------------------------RKAFVPHGPGRLLLA 656 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R+LA ++G++ + AF GED++ T A F V +VT R K + Sbjct: 657 ADYSQIELRILAHISGDEAMIAAFRRGEDIHARTAAEVFGVPLGEVTPAMRRSAKAVNF- 715 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ + + Sbjct: 716 -------------GIVYGISDYGLS------------------------------RDLGI 732 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + + + +++ V L + + + G Sbjct: 733 SRSEAHDYIERYFRRYRGVKAY---LEEIVARARQEGYVTTLL----------------- 772 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 GR D+ ++ R +Q + DI+ M+ Sbjct: 773 ------GRRRYLPDLFSSN---RNVRSFGERTAMNTP------IQGTAADIIKMAMVKIF 817 Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESK 671 + ++L VHDE++ + PD D + ++ M +PL+ + Sbjct: 818 RLLEAQYPAARMILQVHDELIFDVPDDDLPAVAGLVKDTMEHTLE--LQVPLQVDLKAGP 875 Query: 672 RY 673 + Sbjct: 876 NW 877 >gi|330718752|ref|ZP_08313352.1| DNA polymerase I [Leuconostoc fallax KCTC 3537] Length = 896 Score = 313 bits (803), Expect = 4e-83, Method: Composition-based stats. Identities = 97/657 (14%), Positives = 193/657 (29%), Gaps = 131/657 (19%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 F D + ++ +K +E+ V +N +R VL ++++ + Sbjct: 351 IGFVIGDEQRGYFASRDFSLLQSPEIKAIIESPTVEKRVYNVKAQR-VLFKRLDIELR-N 408 Query: 92 RWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 L+ A L + + + Q E+ A+F + Sbjct: 409 ATFDFLLAAYLLDTTDNNAELATLAQKYDIYLQLDEDIYGKGAKFSVPTD-----EGRVL 463 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 H V V + ++L E L + + G VD + Sbjct: 464 MHIAHKADTLNQLIEPVMVQLKEHEQLALYQDIELPLASVLADMEYTGIRVDQNQLQEMG 523 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 + +D + +++ + + ++L LF + GL + T+ +T VL Sbjct: 524 ESLDAQIVDVEKAIYEEAG-EEFNINSPKQLGILLFEKMGLPVIKRTKTGYSTAVEVLEK 582 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 P + R ++ ++ L+ + T ++TGR S Sbjct: 583 LADQAPIVAYILQYRQ-LAKLKSTYIDGLLAVVYRQDSKIHTRYLQTLTQTGRLSSVDPN 641 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGI 384 QN+P + + +R + ++ AD + I Sbjct: 642 LQNIPMRTEAGR-------------------------QIRKAFVPSEPNWQIFGADYSQI 676 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV-TKDQRAIGKVMELALGYQG 443 E RVLA M G++ +AF ED++ T F + T QR K + + Y Sbjct: 677 ELRVLAHMTGDKNLQRAFLNDEDIHSETARAVFGLNDDAPITSLQRRAAKAVNFGIVYGI 736 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + L ++ ++ E++ + + E + Sbjct: 737 S-----DFGLSNNLGISRAEAKRFIDTYFEKFPQVHEWMENAKTLAHEQGYVETL----- 786 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 A++RR +P ++ K Sbjct: 787 ------------------------------------AKRRRYLPDIHAKNFNRRSF---- 806 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------ 617 R+ +NT +Q + DI+ M+ Sbjct: 807 -----------AERTAMNTP------------------IQGSAADIIKIAMIKMNQVLHE 837 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P ++ + +M S A +PLK E + Sbjct: 838 HHLQARMLLQVHDELIFEAPTSEIPELEEIVPQVMDSAV--ALDVPLKVESRHGSNW 892 >gi|319941599|ref|ZP_08015924.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B] gi|319804901|gb|EFW01747.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B] Length = 952 Score = 313 bits (803), Expect = 4e-83, Method: Composition-based stats. Identities = 101/673 (15%), Positives = 190/673 (28%), Gaps = 147/673 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCV---HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82 + AF F V + + + +K E+ + + H++ VL Sbjct: 398 RHADLGGLAFAFTPLDVWVVQPTIELSSAKIFEAVKPWFES-NAPKLFHDAKAAIHVLA- 455 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 ++ + + +++ + V +EL R + Sbjct: 456 AQHIAVN-GQIDDAMLMDYVLEAHLSHDLV----------RISARELRRRIPTRDEVSGK 504 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTV------TREIFKRLEPLSSKEQELWY-----LDQT 191 + + + + + E + Sbjct: 505 GAKRVGWRETPPEDAARFLAESAAALRAAGSVLKARLLADEKLLRVYEDIERPLVGVLAR 564 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G VD +L ++ + VE +L +E + + ++L LF E GL + Sbjct: 565 MESAGITVDASLLAQESKELGVEVEQLVEEAHAAAGHP-FNLSSPKQLAQILFAEQGLPV 623 Query: 252 EDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 T +T + VLS P + +R ++ L+ L ++ DGR+ T Sbjct: 624 VKKTASGTPSTDEEVLSELALNYPLPKIILEHRR-LTKLKSTYLDKLPTLIDRDGRIHTT 682 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 A TGR S QN+P + +R+ Sbjct: 683 FGQAVA-VTGRLSSMDPNLQNIPTRTPEGRR-------------------------IRTA 716 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 A G ++ AD + +E R++A ++ + L AF GED++ +T A F+ QVT D Sbjct: 717 FTARRGWSVIDADYSQVELRIMAHLSQDAGLLSAFSRGEDIHRSTAAEVFHTPLDQVTPD 776 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 QR + KV+ G++ A Sbjct: 777 QRRMAKVINF--------------GLIYGMSAFGLAQQ---------------------- 800 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + K V + + Sbjct: 801 --------MGLDRQVAAAYVDEYFHKFPGVKRYMEKTRAQAAE----------------- 835 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + + GR L D+ R + + +Q + Sbjct: 836 ---------DGYVETAFGRRLWVPDITAPRPMVRAAAERAAINA---------PMQGTAA 877 Query: 608 DILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKG 660 DI+ M+ K ++L VHDE++ E P + L LM Sbjct: 878 DIIKRAMIAVDAWLRTEKLQAKLLLQVHDELIVEAPAEEVELVKQKLPELMAGAAK--LS 935 Query: 661 LPLKAEGYESKRY 673 +PL A+ + Sbjct: 936 VPLIADVGVGASW 948 >gi|170017479|ref|YP_001728398.1| DNA polymerase I [Leuconostoc citreum KM20] gi|169804336|gb|ACA82954.1| DNA polymerase I - 3'-5' exonuclease or polymerase domains [Leuconostoc citreum KM20] Length = 893 Score = 313 bits (803), Expect = 5e-83, Method: Composition-based stats. Identities = 84/641 (13%), Positives = 186/641 (29%), Gaps = 146/641 (22%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAV 112 L+ +EN D+ N + +L L + + L++A + + Sbjct: 372 ELRAVIENGDIKKNVFNVKAQL-ILFKRLGLTLKGAQ-FDFLLVAYLLDTTDNDNEMSTL 429 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-- 170 + + + E + E L K D + E Sbjct: 430 AQRFDV-------------YLTEDEEIYGKGAKYAVPDDEELVLMHLAHKADALIQLEMP 476 Query: 171 ----IFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + + E L ++ + +G+ +D + + ++ +++ + Sbjct: 477 ALSALQSHQQTHLYTEIELPLAHVLAEMEYQGFKIDRKRLQVIGEDLEARIHTIEEAIY- 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF + GL + T+ +T VL P + R Sbjct: 536 LEAGEKFNLNSPKQLGILLFEKMGLPIIKKTKTGYSTAVDVLEKLASQAPIVEHILQYRQ 595 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ + L+ ++++ T ++TGR S QN+P + Sbjct: 596 -LAKIKSTYVEGLLAVVHTEDSKIHTRFLQTLTQTGRLSSVDPNLQNIPMRTEEGR---- 650 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R + S ++ AD + IE RVLA + G+Q + Sbjct: 651 ---------------------QIRRAFVPSQPNWQIFGADYSQIELRVLAHITGDQNMQR 689 Query: 401 AFETGEDLYVTTYARSFNVAPAQV-TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF GED++ T F + R K + + G++ Sbjct: 690 AFLNGEDIHAETARAVFGLDNNAPVDPLMRRTAKAVNFGIV--------------YGISD 735 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 ++ +R + + ++ ++ E Sbjct: 736 YGLSN------------------------------NLGISRAEAKRFIETYFKEFPQIHE 765 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + + + R ++ + Sbjct: 766 WMTKIKAQAHE--------------------------QGYVETIAKRRRYLPEIKSKNF- 798 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 R +Q + DI+ M+ A +I+L VHDE++ Sbjct: 799 --NLRSFAERTAMNSP------IQGSAADIIKIAMIKVADALKDNQLQANILLQVHDELI 850 Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 E P+ + + +M S A +P++ + + + Sbjct: 851 FEAPEDEIETLRDIVTRVMDSAV--ALDVPMQVDSHYGNTW 889 >gi|262197787|ref|YP_003268996.1| DNA polymerase I [Haliangium ochraceum DSM 14365] gi|262081134|gb|ACY17103.1| DNA polymerase I [Haliangium ochraceum DSM 14365] Length = 930 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 110/665 (16%), Positives = 200/665 (30%), Gaps = 155/665 (23%) Query: 44 LWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWI 94 H +P+ L+ L + V IVAH + L LD P+ + Sbjct: 382 YLPLAHRYLGVPAQWSALPEALRALLADPAVEIVAH----DVKSLARLLRTLDAPLAGVL 437 Query: 95 -CTLVLARSNGLPSALK-------AVGEALKLSSQKMEEGKELIARFCKG-ETHECLYDR 145 T++ A G L+ AVG L + G+ I Sbjct: 438 GDTMLAAYLLGQEGKLEVEDVAGAAVGAELPTRKSLLGSGRSKIGFEAVDISAAAMRAGG 497 Query: 146 NKPNHREAWRLFGEY---CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 +W GE GD + R++ LE + + G +DV Sbjct: 498 AAAAVLASWPRLGEQLEHAGGDGAL-RKLHDELELPLALLLAEI------EEHGITLDVP 550 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED------LTE 256 L + + +++++ L + ++L LF + GL + + Sbjct: 551 YLRALADELGGQLAGIERQVYELAG-EEFNLGSPKQLGHMLFEKLGLRADKMRRTKTGSY 609 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASR 315 +T +L S + + +R + L+ L +N GR+ + A+ Sbjct: 610 STNHEILESMAESHAIIPPIIEHR-ELLKLKGTYLDALPPLVNPHTGRIHTSFNQAVAA- 667 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P +R +A+ GK Sbjct: 668 TGRLSSQDPNLQNIPIRKDIGRR-------------------------IRRAFVAAPGKT 702 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 LV D + IE RV+A ++G++ ++AF+ D++ T A F++ ++ D+R + K + Sbjct: 703 LVSIDYSQIELRVMAHLSGDERLVQAFQNDVDVHTQTAAEVFDLPREEIGPDERRVAKAV 762 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 L Y + L ++ E + + + + Sbjct: 763 NYGLMYGQS-----EFGLAQSLGISRAQAAHYMERYFERFSTVRAYMDQVVADARAEGAA 817 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + +RR +P + + + Sbjct: 818 -----------------------------------------VTLLGRRRPIPDLDARNQQ 836 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 R R VQ + DI+ M+ Sbjct: 837 ----------RRRA-----------------AERVAQNTP------VQGSAADIIKLAML 863 Query: 616 NATKAGYD------IVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGY 668 ++LTVHDE+V E P+ E A + M +A +PL A Sbjct: 864 RVAAHLARGEWDASMLLTVHDELVFEVVPEQAETFAKAMIAEMEGA--YALDVPLVASAG 921 Query: 669 ESKRY 673 + + Sbjct: 922 IADNW 926 >gi|27468285|ref|NP_764922.1| DNA polymerase I [Staphylococcus epidermidis ATCC 12228] gi|27315831|gb|AAO04966.1|AE016748_200 DNA polymerase I [Staphylococcus epidermidis ATCC 12228] Length = 903 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 95/663 (14%), Positives = 194/663 (29%), Gaps = 131/663 (19%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81 Y +D ++ F F + V + D + L + LE+ + T + +++ + V Sbjct: 355 YLKD-TILKFGFYTNHQHVVI--NAEDVKDYKHLVQWLEDKNTTKIVYDAKKTY---VSA 408 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 ++I ++ + ++ V +S K+ I F KG+ H Sbjct: 409 HRLGINIENIE-FDVMLASYIIDPSRSIDDVKSV--VSLYGQNYVKDNITIFGKGKKHHI 465 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 + H + + E + ++E L E L + + + G D+ Sbjct: 466 PEEPILNEHIASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDI 525 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 + + + L + + G + ++L LF L + T+ +T Sbjct: 526 NDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGYST 584 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + P + R ++ + L + ++ D R+ A +TGR Sbjct: 585 AVDVLEKLQGEHPIIDDILEYRQ-LAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGR 642 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLV 377 S QN+P + +R S+ ++ Sbjct: 643 LSSIDPNLQNIPIRLEEGRK-------------------------IRKAFKPTSKDSVIL 677 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA + ++ AF G D++ T + FNV QV R K + Sbjct: 678 SADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF 737 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 G++ + Sbjct: 738 --------------GIVYGISDYGLSQ------------------------------SLG 753 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + V + +++ + G Sbjct: 754 ITRKQAKAFIDDYLASFPGVKQYMSDI---VKDAKAQGYVETLLH--------------- 795 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R D+ + R +Q + DI+ M+ Sbjct: 796 --------RRRYIPDITSRNF---NLRSFAERTAMNTP------IQGSAADIIKLAMVKF 838 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670 ++ ++L VHDE++ E P ++ + S + +M +PLK + Sbjct: 839 SEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYG 896 Query: 671 KRY 673 + Sbjct: 897 ATW 899 >gi|331000437|ref|ZP_08324112.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT 11859] gi|329571769|gb|EGG53449.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT 11859] Length = 950 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 94/682 (13%), Positives = 192/682 (28%), Gaps = 164/682 (24%) Query: 31 ILFAFGFDDHPVELWDCVHD---------PVMPQVLKEALENTDVTIVAHNSYFERTVLK 81 + AFG D +D ++ LE+ +++ + + V Sbjct: 390 VGVAFGTTDGKTSYVPIDNDVLLAQGLTLGTFKEIFGRVLEHKKPIKCGYDTKYMKHVFA 449 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGET 138 +++ ++ + + K LK E Sbjct: 450 N-VGINLAGVS-DDVMLESYVLEAHRSHTIEKLAANWLKYE-------------LRGEEE 494 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQELWY 187 + + + E+ V + + + + E L Sbjct: 495 LLGKGAKKLSFSQVSVEKAAEFASERVFIVSRLNRLFKKALSDDAKLEKIYRDIEMPLSD 554 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + G +D L ++ + +L+++ + ++L LF + Sbjct: 555 VLFKMEQNGVLIDTKLLDQQTAQLNTKARELEEQAFEVAG-ENFKLSSPKQLGEILFDKM 613 Query: 248 GL----HLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 G+ T +T + VLS + P A R ++ L + ++ Sbjct: 614 GVVLEGAKPKKTISGNYSTSEEVLSELAENYPLAKIALEYR-TITKLVTTYTEKLPKMVD 672 Query: 300 S-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 DGR+ T + A TGR S QN+P + + Sbjct: 673 PKDGRVHTTFEQAVA-VTGRLSSTNPNLQNIPIRTEEGRK-------------------- 711 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 VR I++ G KL+ AD + IE R++A ++ ++ ++AF+ ED++ T A F Sbjct: 712 -----VREAFISASGCKLISADYSQIELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFG 766 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 +VT + R I KV+ G++ Sbjct: 767 KERDKVTPNDRRIAKVINF--------------GLMYGMSPFGL---------------- 796 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 A + + + V + ++ + Sbjct: 797 --------------AKNLGIGRDEAKNYINKFFARFPGVHDYMERTRALADR--QGYVET 840 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 GR L ++ + R Sbjct: 841 TF------------------------GRRLWLPEIHAGGARRAAAER----------AAI 866 Query: 599 ENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASM-LYHLM 651 +Q + D++ M+ K ++L +HDE++ E P+ + L +M Sbjct: 867 NAPMQGTAADLIKLSMIAVQKWIEEKGLKSKLILQIHDELIMEVPEAEVDLVKENLPKIM 926 Query: 652 TSNPSWAKGLPLKAEGYESKRY 673 S +PL AE + Sbjct: 927 DSVTE--LHVPLIAEVGVGDNW 946 >gi|167037882|ref|YP_001665460.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116299|ref|YP_004186458.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856716|gb|ABY95124.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929390|gb|ADV80075.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 872 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 92/693 (13%), Positives = 199/693 (28%), Gaps = 152/693 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 + + D + + AF F + V D + LKE Sbjct: 307 KLIAL------LQDSKSIAFYPLIYEGEIKKIAFSFGNDTV-YIDGFQ----IKDLKEIF 355 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 E H + V + ++ +++ T ++A + + LK Sbjct: 356 EKEKFEFTTHEIK-DFLVKLSYKGIECK-SKYMDTAIMAYLLNPSESNYDLDRVLK---- 409 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL--- 178 K L E K + +Y ++ ++L Sbjct: 410 -----KYLKVDVPSYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLREKLMNFIEE 464 Query: 179 -------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L + +++ G+ +D + L+Q ++ ++ ++ Sbjct: 465 MDMKRLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAGYQ-F 523 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L +LF + L + T+ +T VL + R ++ Sbjct: 524 NVNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNNIVNDIIEYRQ-LTKLKS 582 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 +N + M+ + R+ + + + TGR S QN+P Sbjct: 583 TYINGFLPLMDENNRVHSNFKQMV-TSTGRISSTEPNLQNIPIREEFGR----------- 630 Query: 349 SITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R I + +V AD + IE RVLA ++G++ +++F ED Sbjct: 631 --------------QIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNED 676 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +++ T + F V +VT + R K + G++ + Sbjct: 677 IHLRTASEVFKVPMEKVTPEMRRAAKAVNF--------------GIIYGISDYGLS---- 718 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + + +++ V E ++ + Sbjct: 719 --------------------------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRF 752 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 ++ N ++ R ++ + T Q Sbjct: 753 AKE--------------------------NGYVITIMNRRRYIPEINSRNF---TQRSQA 783 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDE 641 R +Q + DI+ M+ ++L VHDE+V +T + Sbjct: 784 ERLAMNAP------IQGSAADIIKMAMVRVYNDLEKLKLKSKLILQVHDELVVDTYKDEV 837 Query: 642 FNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 + M + +PL E + Sbjct: 838 EIVKKILKDNMENVVQ--LKVPLVVEIGVGPNW 868 >gi|329724656|gb|EGG61162.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU144] Length = 876 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 94/663 (14%), Positives = 193/663 (29%), Gaps = 131/663 (19%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81 Y +D ++ F F + V + D + L + LE+ + T + +++ + V Sbjct: 328 YLKD-TILKFGFYTNHQHVVI--NAEDVKDYKHLVQWLEDKNTTKIVYDAKKTY---VSA 381 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 ++I ++ + ++ V +S K+ I F KG+ H Sbjct: 382 HRLGINIENIE-FDVMLASYIIDPSRSIDDVKSV--VSLYGQNYVKDNITIFGKGKKHHI 438 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 + H + + E + ++E L E L + + + G D+ Sbjct: 439 PEEPILNEHIASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDI 498 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 + + + L + + G + ++L LF L + T+ +T Sbjct: 499 NDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGYST 557 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + P + R ++ + L + ++ D R+ A +TGR Sbjct: 558 AVDVLEKLQGEHPIIDDILEYRQ-LAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGR 615 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLV 377 S QN+P + +R S+ ++ Sbjct: 616 LSSIDPNLQNIPIRLEEGRK-------------------------IRKAFKPTSKDSVIL 650 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA + ++ AF D++ T + FNV QV R K + Sbjct: 651 SADYSQIELRVLAHITQDESLKHAFINRHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF 710 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 G++ + Sbjct: 711 --------------GIVYGISDYGLSQ------------------------------SLG 726 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + V + +++ + G Sbjct: 727 ITRKQAKAFIDDYLASFPGVKQYMSDI---VKDAKAQGYVETLLH--------------- 768 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R D+ + R +Q + DI+ M+ Sbjct: 769 --------RRRYIPDITSRNF---NLRSFAERTAMNTP------IQGSAADIIKLAMVKF 811 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670 ++ ++L VHDE++ E P ++ + S + +M +PLK + Sbjct: 812 SEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYG 869 Query: 671 KRY 673 + Sbjct: 870 ATW 872 >gi|115378925|ref|ZP_01466060.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] gi|115364075|gb|EAU63175.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] Length = 852 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 115/675 (17%), Positives = 207/675 (30%), Gaps = 154/675 (22%) Query: 30 VILFAFGFDDHPVELWDCVHDP----VMPQVLKE-----ALENTDVTIVAHNSYFERTVL 80 ++ D HD +P+ L + V H + VL Sbjct: 297 LVGLGIALPDGRTAYVPLRHDVLGSVQVPEARFAHVMGGLLADPAVKKGGH----DLKVL 352 Query: 81 KACFNLDIPI---HRWICTLVLARSNGLP---SALKAVG-EALKLSSQKM---EEGKE-- 128 + + +L+ AL + E L L + EGK+ Sbjct: 353 SLLLG-GMKLTLQGAHDDVELLSYLLNPSRREHALPDLSRERLGLELPALPATAEGKKGR 411 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 + E R R A RL+ E + E L + Sbjct: 412 PLVEHSAEEVAAAYGARADAARRLAPRLWEELEAIGLAALAR---------DMELPLLPI 462 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + +G +D A+ TL+ VD E + + +L + +L L+ + Sbjct: 463 LARMEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQ-EFNVGSNPQLAQVLYEKLQ 521 Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + + +T Q VL + P + R S+ L+TL + DGR+ Sbjct: 522 LPILKKGKTGPSTDQEVLEKLAEQHPLPGAILEYR-SLSKLKSTYLDTLPGLVAKDGRIH 580 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 T A+ TGR S QN+P + E +R Sbjct: 581 TTYHQA-ATATGRLSSSDPNLQNIPVRTELGRE-------------------------IR 614 Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 +A G +LV AD + +E R+LA +A + L AF+ ED++ T A F V P +V Sbjct: 615 RAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAAEIFGVTPDKVD 674 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 +DQR + K + GL+ + + + Sbjct: 675 RDQRRVAKTVNF--------------GIAYGLSPHGLSTRLSI----------------- 703 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + + +++ + L E+ + G Sbjct: 704 -------------SVEEARDIIERYFTRYAGIRRY---LEDTVERARKTGYVETM----- 742 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 GR + D+ + + + +Q Sbjct: 743 ------------------FGRRRLMADLNSKNRAVAQAAER---------AAINMPIQGT 775 Query: 606 SRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA 658 + D++ + M+ +A ++L VHDE++ E P+ + L M+S + Sbjct: 776 AADLIKKAMLAVDEALTKERLATVMLLQVHDELLFEAPEAEVDRVKALARQCMSSVAT-- 833 Query: 659 KGLPLKAEGYESKRY 673 +PLK + K + Sbjct: 834 LKVPLKVDVGAGKTW 848 >gi|61611902|gb|AAX47270.1| DNA polymerase large fragment [Thermus aquaticus] Length = 554 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 104/610 (17%), Positives = 185/610 (30%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + +VL L +P ++LA + + V Sbjct: 77 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 117 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 GE E +R + R L+G R ++ E+ L + + Sbjct: 118 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 168 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 G +DVA L+ V E +L+ E+ L + ++L+ LF E GL Sbjct: 169 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 227 Query: 255 T-----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 T +T VL + ++ P ++ R ++ ++ L + ++ GRL Sbjct: 228 TENTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 286 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 287 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 320 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V V Sbjct: 321 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 380 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 381 RRTAKTINY--------------GVLYGMS------------------------------ 396 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + + Q +V + + E+ G Sbjct: 397 AHHLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 445 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 446 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 481 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE+V E P + L +M A +PL Sbjct: 482 LMKLAMVKLLPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 539 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 540 EVEVGIGEDW 549 >gi|293366362|ref|ZP_06613041.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis M23864:W2(grey)] gi|291319487|gb|EFE59854.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis M23864:W2(grey)] gi|329733786|gb|EGG70112.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU045] Length = 876 Score = 313 bits (801), Expect = 7e-83, Method: Composition-based stats. Identities = 95/663 (14%), Positives = 194/663 (29%), Gaps = 131/663 (19%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81 Y +D ++ F F + V + D + L + LE+ + T + +++ + V Sbjct: 328 YLKD-TILKFGFYTNHQHVVI--NAEDVKDYKHLVQWLEDKNTTKIVYDAKKTY---VSA 381 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 ++I ++ + ++ V +S K+ I F KG+ H Sbjct: 382 HRLGINIENIE-FDVMLASYIIDPSRSIDDVKSV--VSLYGQNYVKDNITIFGKGKKHHI 438 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 + H + + E + ++E L E L + + + G D+ Sbjct: 439 PEEPILNEHIASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDI 498 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 + + + L + + G + ++L LF L + T+ +T Sbjct: 499 NDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGYST 557 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + P + R ++ + L + ++ D R+ A +TGR Sbjct: 558 AVDVLEKLQGEHPIIDDILEYRQ-LAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGR 615 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLV 377 S QN+P + +R S+ ++ Sbjct: 616 LSSIDPNLQNIPIRLEEGRK-------------------------IRKAFKPTSKDSVIL 650 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA + ++ AF G D++ T + FNV QV R K + Sbjct: 651 SADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF 710 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 G++ + Sbjct: 711 --------------GIVYGISDYGLSQ------------------------------SLG 726 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + V + +++ + G Sbjct: 727 ITRKQAKAFIDDYLASFPGVKQYMSDI---VKDAKAQGYVETLLH--------------- 768 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R D+ + R +Q + DI+ M+ Sbjct: 769 --------RRRYIPDITSRNF---NLRSFAERTAMNTP------IQGSAADIIKLAMVKF 811 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670 ++ ++L VHDE++ E P ++ + S + +M +PLK + Sbjct: 812 SEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYG 869 Query: 671 KRY 673 + Sbjct: 870 ATW 872 >gi|164687872|ref|ZP_02211900.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM 16795] gi|164603147|gb|EDQ96612.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM 16795] Length = 882 Score = 313 bits (801), Expect = 7e-83, Method: Composition-based stats. Identities = 101/681 (14%), Positives = 211/681 (30%), Gaps = 148/681 (21%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF 75 + G D V+ D + + ++ +PQ +K L N ++ ++ Sbjct: 323 IDVIGKEGNILDKRVLYVFLSLDGNEIYYV---NEDELPQ-IKTLLSNPEIKKHGYDLKE 378 Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIARF 133 + +L + +++ + ++ + A+K ++K++ ++L+ Sbjct: 379 DY-ILLKPYEIELNSMD-FDITIAEYLIDSKSSTSYECSAIAMKYLTRKIKSKEDLL--- 433 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQ 183 + K + Y + ++ ++E + E Sbjct: 434 -------GKGAKAKKFDEIEFDELSAYIGDILNTVNGVYLKMEEKLKETEMDGLFYHVEM 486 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 L + ++ G VD + L + +L+ E+ L + ++L L Sbjct: 487 PLVEVLGSMEYIGMKVDKDQLNELKEKFTTIINELENEIFELAG-EPFNINSPKQLGVVL 545 Query: 244 FLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 F + GL + T+ +T VL + ++ R + + L++ +N Sbjct: 546 FEKLGLPVIKKTKTGYSTNAEVLEKLRDKHEIIDKITEYRQIV-KLNSTYVEGLLKIINP 604 Query: 301 D-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 GR+ + + TGR S QN+P + + Sbjct: 605 KTGRIHSSFNQ-TITTTGRISSTEPNMQNIPVKTEMGRD--------------------- 642 Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R +A E KLV AD + +E RVLA M+G++ + AF+ GED++ T ++ F+V Sbjct: 643 ----IRKVFVADENCKLVDADYSQVELRVLAHMSGDENMIDAFKHGEDIHSKTASQIFDV 698 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 VT QR K + G + Sbjct: 699 DIKDVTSKQRIEAKAIN--------------FGIIYGKTDFGLSQ--------------- 729 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 + + ++ K+ ++ E +A E E G A Sbjct: 730 ---------------DLNIPVATAKAYIDSYFNKYPKIKEFM---DEAVESATETGYATT 771 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 R ++ + + Q R Sbjct: 772 ILN-----------------------RRRYIPEIKASNFIVRN---QGKRFAMNAP---- 801 Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMT 652 +Q + DI+ M+N ++L VHDE++ E D + A + M Sbjct: 802 --IQGSAADIIKVAMVNVYNKLKENNMKSKLILQVHDELIVEAVDEELEMAEKIVREEME 859 Query: 653 SNPSWAKGLPLKAEGYESKRY 673 + + + L + + Sbjct: 860 NA--QSMDVKLDVDLNTGDSW 878 >gi|312127509|ref|YP_003992383.1| DNA polymerase i [Caldicellulosiruptor hydrothermalis 108] gi|311777528|gb|ADQ07014.1| DNA polymerase I [Caldicellulosiruptor hydrothermalis 108] Length = 850 Score = 313 bits (801), Expect = 7e-83, Method: Composition-based stats. Identities = 89/647 (13%), Positives = 192/647 (29%), Gaps = 147/647 (22%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI--PIHRWICT 96 D D + + + L++ V IV ++ + NL+ I Sbjct: 335 DQESNTVFVTRDRHLVEEI---LKSDTVKIV-----YDLKNIFHQLNLEDTDNIKNCEDV 386 Query: 97 LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156 ++ + + + +L + + I K + + + Sbjct: 387 MIASYVLDSTRS------SYELETLFVSYLNTDIEAVKKDKKMVSVVLLKRLWDDLLR-- 438 Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 D+ + ++ + E+ L + + G+ VD + ++ + Sbjct: 439 -----LIDLNSCQFLY------ENIERPLIPVLYEMEKTGFKVDRDALLQYTKEIENKIL 487 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQA 273 KL+ ++ + + ++L LF + L + T+ +T VL Sbjct: 488 KLETQIYQIAG-EWFNINSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIV 546 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + + RM ++ L++A+N T + TGR + QN+P Sbjct: 547 PLILDYRMY-TKILTTYCQGLLQAINPSSGRVHTTFIQTGTATGRLASSDPNLQNIPVKY 605 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + +R + EG L+ AD + IE R+LA ++ Sbjct: 606 DEGK-------------------------LIRKVFVPEEGHVLIDADYSQIELRILAHIS 640 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF+ D++ T A F V A VT + R+ K + + Sbjct: 641 EDERLINAFKNNIDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIV------------- 687 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ A + + ++ Sbjct: 688 -YGISD------------------------------YGLARDIKISRKEAAEFINKYFER 716 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + +V E + + + + N ++ R +D+ Sbjct: 717 YPKVKEYLDNIVRFARE--------------------------NGYVLTLFNRKRYVKDI 750 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLT 627 + R +Q + DI+ M+ + I+L Sbjct: 751 KSAN---RNARSYAERIAMNSP------IQGSAADIMKLAMIKVYQKLKENNLKSKIILQ 801 Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE++ E P ++ + M + A +PL E E + Sbjct: 802 VHDELLIEAPYEEKDIVKRIVKREMENAV--ALKVPLVVEVKEGLNW 846 >gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863] gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863] Length = 874 Score = 313 bits (801), Expect = 7e-83, Method: Composition-based stats. Identities = 103/654 (15%), Positives = 182/654 (27%), Gaps = 146/654 (22%) Query: 31 ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLD 87 D P L + L ++ +V H + L ++ Sbjct: 344 RPVGLAMGDPPAWL----EGEALADP--AELLDSGARLVGH----DLKPLYNWLYSQGIE 393 Query: 88 IPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 P T + A + L + L + +L Sbjct: 394 -PPAPAFDTALAAYLLDPSRSSYDLADLCRQHGLGELPPGDTPDL------------WAT 440 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 R R+ E V +++ E L + + G +D A Sbjct: 441 RASVLPELHRRMEAELAAQGVD---RLYR------EVELPLMPILAEMEAVGVGIDPAAL 491 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQ 260 H ++ ++ ++ QE+ L + ++L LF + GL T++ T Sbjct: 492 HEMSVELERRILQVSQEIYELAGMQ-FNISSPKQLGDVLFGKLGLPSGKKTKSGGYSTDA 550 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL P A +V + R ++ ++ L + + DGR+ T A TGR S Sbjct: 551 EVLEELAAAYPIAARVLDYR-TLTKLKGTYVDALGQLIARDGRIHTTFAQTVAE-TGRLS 608 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380 QN+P +R +A G L+ AD Sbjct: 609 SKDPNLQNIPIRIEEGRR-------------------------IRKAFVARPGCVLLSAD 643 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RV+A +G+ +AF +D++ T A F V QVT + R K + L Sbjct: 644 YSQIELRVVAHFSGDPALREAFLHDQDIHTRTAAEVFGVPMDQVTPEMRRQAKAVNFGLI 703 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + ++ + ++ + + E G Sbjct: 704 YGQT-----DFGLARSVGISRAEARAFIETYFAKFAGVRRYMEEKKAEAREKGYVTTLDG 758 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + RV + + T G A KR + + +++ Sbjct: 759 RRRPLP-----EINHRVFTIRQNAERMAINTPIQGTAADLMKRAMIAVRRAMREEGL--- 810 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 +R M+ Sbjct: 811 --------------------------------------------SAR------MI----- 815 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 L VHDE+V E P + + L M +PLK E + Sbjct: 816 -----LQVHDELVFECPVGEVDRLARLVRREMEGAMK--LDVPLKVEVKVGPDW 862 >gi|222151604|ref|YP_002560760.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402] gi|222120729|dbj|BAH18064.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402] Length = 875 Score = 313 bits (801), Expect = 8e-83, Method: Composition-based stats. Identities = 104/684 (15%), Positives = 202/684 (29%), Gaps = 132/684 (19%) Query: 5 FIDFETRSPIDLT-KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 DF T + + +C Y ++ +I + + AL+N Sbjct: 305 TFDFSTIESMAIRIRCFQDNYLKN-EIIGVGILV-GAHTFVIPPDEIAQN-ESFINALQN 361 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 D +++ E VL + ++DI C ++ + + V ++ ++ Sbjct: 362 EDTKKYVYDAK-ETKVLFSRLDIDIKGIE-HCVMLASYLLDPALKIIDVAQSAQMQGIYY 419 Query: 124 EEGKELIARFCKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182 E E+I F KG N H E + E+ + L++ E Sbjct: 420 VESDEMI--FGKGAKMHIPERTNLFKHIASEVNAIHEVSALQIRKLNELKQLEL-LTALE 476 Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 L + + +G V+ + Q + +L + + ++L Sbjct: 477 LPLSLVLADMEMQGIKVNRQTLQEMQQEIQSRLDELITRIHEHAGST-FNINSPKQLGVV 535 Query: 243 LFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + L + +T VL S P + R S+ + L + Sbjct: 536 LFEDLKLDSPKKKKTKTGYSTAVDVLESLAGKHPIIEDILLYR-TLSKLQSTYVEGLQKL 594 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 + D ++ + A +TGR S QN+P + Sbjct: 595 IGDDDKIHTRFNQVIA-QTGRLSSIDPNLQNIPVRLDEGRK------------------- 634 Query: 358 QIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R + + AD + IE RVLA + G++ L+AF G D++ T + Sbjct: 635 ------IRKAFVPSEPNSVIFAADYSQIELRVLAHITGDKGMLEAFNQGIDIHTKTAMKV 688 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 FNV +VT D R K + G++ + Sbjct: 689 FNVEREEVTSDMRRQAKAVNF--------------GIVYGISDYGLSQ------------ 722 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 + + + V +++ Q +Q G Sbjct: 723 ------------------SLGITRKDAQAFIDNYLESFPDVKAYMHDIIQEAKQ---QGY 761 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 R D+ + R Sbjct: 762 VTTLLN-----------------------RRRYIPDITSRNF---NLRGFAERTAMNTP- 794 Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYH 649 +Q + DI+ M++ + ++L VHDE++ E P + S+ + H Sbjct: 795 -----IQGSAADIIKLAMVHYNEQVKETDFKAKLLLQVHDELIFEVPKDELEAFSLFVKH 849 Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673 +M + +PL+ E + + Sbjct: 850 VMENALE--LKVPLEVEYDSGESW 871 >gi|118586552|ref|ZP_01543994.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163] gi|118432993|gb|EAV39717.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163] Length = 911 Score = 313 bits (801), Expect = 8e-83, Method: Composition-based stats. Identities = 95/654 (14%), Positives = 183/654 (27%), Gaps = 128/654 (19%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 AF + + ++ + L D+ N+ E VL L I Sbjct: 368 AFVVGNENDGYFASRDLELLNSSVVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLD- 425 Query: 94 ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 L+++ L + + + E + + +H Sbjct: 426 FDFLLVSYLLDTTDNDNQLATLANRFNVFLESDAEV-----YGSGVKFKIPENNETLFSH 480 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 ++ E E L + ++ G +D A L Q Sbjct: 481 MANKASTISKLHDPSMKKLSDHQQAELYRQIELPLSKVLASMEINGIKLDQAELKKLGQE 540 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267 D +L++++ + ++L LF+ + T+ +T VL Sbjct: 541 FDQRIFELEKQIYEEAGQ-EFNINSPKQLADLLFVHMKIPPIKKTKTGYSTAANVLEELA 599 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P + R ++ + L+E +N D T ++TGR S Q Sbjct: 600 EKYPFVGLILQYRQ-LAKLNSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQ 658 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEA 386 N+P + +R + S EG ++ +D + IE Sbjct: 659 NIPDRDEEGKR-------------------------IRKAFVPSHEGWEIFGSDYSQIEL 693 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA + G++ KAFE+GED++ T F ++ Q Sbjct: 694 RVLAHVTGDENLKKAFESGEDIHAATARSIFGLSTDQ----------------------- 730 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 K A NF + A + + Sbjct: 731 --------------------KITFDQRRRAKAVNFGIVYGISDFGLAQRLGISRIEGKEI 770 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + + + +V + + + + + R Sbjct: 771 IQTYFHEFPKVKNWIDSIIALAHK--------------------------QGYVETIAQR 804 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620 D+ + R T +Q + DI+ M+ +A Sbjct: 805 RRYLPDIHSKNF---NLRSFAERTATNTP------IQGSAADIIKIAMIKMQQALDDNHL 855 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P + L +M S +PL+ E + + Sbjct: 856 KAKMLLQVHDELIFEAPKQEIDILEELVPKVMDSAVK--LNVPLRVEAHHGVNW 907 >gi|313902130|ref|ZP_07835540.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965] gi|313467593|gb|EFR63097.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965] Length = 1072 Score = 313 bits (801), Expect = 8e-83, Method: Composition-based stats. Identities = 95/594 (15%), Positives = 168/594 (28%), Gaps = 127/594 (21%) Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + A + + + G +L + Sbjct: 586 PAPVTDLKLAAYLLDPVRN-----RYHLVDTARQFFGWDLEE---GPADRPGDPAVCTSS 637 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 + V E L + + + G VD L + Sbjct: 638 LLGRDAALCARLRPAVEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLEELGR 697 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266 + +L +++ L + ++L LF GL + T+ +T VL + Sbjct: 698 LFTRRSQELAEQIYELAGQT-FNINSTQQLGQILFERLGLPVVKKTKTGYSTDAEVLETL 756 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 P A V R + ++ L E + DGR+ T Q A+ TGR S Sbjct: 757 AARHPIAELVLEYR-SLVKLQGTYVDGLAEHIGPDGRIHTTFQQTVAA-TGRLSSTQPNL 814 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P +R +A G +LV AD + IE Sbjct: 815 QNIPIRDEPGR-------------------------SLRRAFVAPPGHRLVAADYSQIEL 849 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA +G+ ++AF G+D++ T + F V QVT +QR + K Sbjct: 850 RVLAHYSGDPGLVEAFAQGQDVHARTASEIFGVPLEQVTPEQRRVAKA------------ 897 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G A ++ + A R Sbjct: 898 --VNFGLAYGQTDFGLARALRIDRA------------------------------DARRF 925 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + + +++ V + + + G+ GR Sbjct: 926 MERYFERYPGVKRYM---EETVRRARQQGEVTTLL-----------------------GR 959 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620 ++ + ++ R +Q + DI+ M+ +A Sbjct: 960 RRPVPEIRHRVFHIRQN---AERVAINTP------IQGTAADIMKLAMIRVHRALAEEGL 1010 Query: 621 GYDIVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 IVL VHDE++ E A++L M + +PL E + Sbjct: 1011 RARIVLQVHDELLVEAPDAEVAAVAALLRREMEGA--FRLDVPLVVEVKSGANW 1062 >gi|73662384|ref|YP_301165.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494899|dbj|BAE18220.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 876 Score = 313 bits (801), Expect = 9e-83, Method: Composition-based stats. Identities = 99/663 (14%), Positives = 190/663 (28%), Gaps = 131/663 (19%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81 Y +D ++ FA +D + D P+ L LEN + +++ + ++ Sbjct: 328 YLKD-DILKFAL-YDGSNHVVIDADKVHDYPE-LIAWLENDKTEKIVYDAKKSY---IVA 381 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 ++ I H ++ + + V + Q KE I F KG+ Sbjct: 382 HRLDIAIK-HIVFDVMLASYIIDPSRTIDDVNSVVSYFDQ--HYVKESIEVFGKGKKRHV 438 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 D +H K + E + + L E L + + + G Sbjct: 439 PEDEILDHHVGTIIEAINKTKPKMEAQLEEYNQTNLLDDLELPLARILSEMEETGIYTVA 498 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 + + + + L + + + ++L LF L + T+ +T Sbjct: 499 TDLQEMEKEIQAKLDVLINNIYNAAG-ESFNINSPKQLGVVLFETLELPVIKKTKTGYST 557 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + P + R S+ + L + ++ D R+ A +TGR Sbjct: 558 AVDVLEQLQGQHPIIDYILEYR-TLSKLQSTYVEGLQKVISEDNRIHTRFNQTLA-QTGR 615 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLV 377 S QN+P +R + + + Sbjct: 616 LSSVDPNLQNIPIRLEEGRR-------------------------IRKAFKSSDDNNVIF 650 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA + ++ +AF ED++ T + FNV P +V R K + Sbjct: 651 SADYSQIELRVLAHITQDESMKQAFINDEDIHTATAMKVFNVQPDEVDSLMRRQAKAVNF 710 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 G++ + Sbjct: 711 --------------GIVYGISDYGLSQ------------------------------SLG 726 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 ++ + V + ++ + G Sbjct: 727 ITRKQAKQFIDDYLDSFPGVKQYMEDI---VKDCKAQGYVETLLH--------------- 768 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN- 616 R D+ + R +Q + DI+ M+N Sbjct: 769 --------RRRYIPDITSRNF---NLRGFAERTAMNTP------IQGSAADIIKLAMVNF 811 Query: 617 ATKAG-----YDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670 + ++L VHDE++ E P + S + +M + A +PLK E Sbjct: 812 VNEVKHTDFHAQLLLQVHDELIFELPKDEVEAFSEFIEEIMDNA--LALDVPLKVETSHG 869 Query: 671 KRY 673 K + Sbjct: 870 KTW 872 >gi|114567529|ref|YP_754683.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338464|gb|ABI69312.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 866 Score = 312 bits (800), Expect = 9e-83, Method: Composition-based stats. Identities = 90/646 (13%), Positives = 177/646 (27%), Gaps = 145/646 (22%) Query: 40 HPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 V Q +K LE+ + HN+ F VL +++ T++ Sbjct: 350 ERVYQLKLEAGDDYKLQWIKALLESAVIKKYLHNAKF-IQVLLLRHGIELRGVA-GDTML 407 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 LA + + LK Q L A + P Sbjct: 408 LAYVDDPAFEGDELDACLKKHLQLNIAENNLAALVNTIRELYFQLEGQIPAELRELLQ-- 465 Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 E + + + G V+ + +++ + Sbjct: 466 ---------------------EVEMPMSEVLARMEFCGVKVERSTLARISEELASGIAGH 504 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQ 275 ++ + L + ++L LF + GL + + +T VL + Sbjct: 505 EERIFELAGSS-FNINSPKQLGKVLFEDLGLRVIKKGKTGYSTGAEVLEELYQEHEIIAH 563 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + N R S+ + L E ++ + T+ + TGR S QN+P Sbjct: 564 ILNYRQ-LSKIKSTYADALQELIHPETGRVHTIFKQAQTATGRLSSVEPNLQNIPIRMEE 622 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394 +R +A ++ AD + I+ R LA ++G Sbjct: 623 GRR-------------------------IRQAFVAPGPDWLIMAADYSQIDLRSLAHISG 657 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ ++ F++G D++ T F+V V + R K + Sbjct: 658 DERLIETFKSGVDIHTRTAVEIFHVPVEWVDSELRRRAKAVNF--------------GII 703 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ A + + + + Sbjct: 704 YGISDFGL------------------------------ARDTGVSRKEARKYIDNYLNSY 733 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + ++ E +G K R ++ Sbjct: 734 PGVKKYMEDI---VEFGRRHGYVETLLK-----------------------RRRYLPELN 767 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 + R+ VQ S DI+ M+ + ++L V Sbjct: 768 ARNKMVQAFGRR---------MALNTPVQGTSADIIKLAMIKVDEEIRKRRLQARLLLQV 818 Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE++ E P T+ S +L M + S +PL+ + Sbjct: 819 HDELLLELPRTELEEVSGLLRDCMENACS--LKVPLEVSLKTGPNW 862 >gi|329737170|gb|EGG73424.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU028] Length = 876 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 95/663 (14%), Positives = 193/663 (29%), Gaps = 131/663 (19%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81 Y +D ++ F F + V + D + L + LE+ + T + +++ + V Sbjct: 328 YLKD-TILKFGFYTNHQHVVI--NAEDVKDYKHLVQWLEDKNTTKIVYDAKKTY---VSA 381 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 ++I ++ + ++ V +S K+ I F KG+ H Sbjct: 382 HRLGINIENIE-FDVMLASYIIDPSRSIDDVKSV--VSLYGQNYVKDNITIFGKGKKHHI 438 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 + H + + E + + E L E L + + + G D+ Sbjct: 439 PEEPILNEHIASVTEAIAAVTPTMKSQLEDYNQNELLKDLELPLARILSEMEEIGIYTDI 498 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 + + + L + + G + ++L LF L + T+ +T Sbjct: 499 NDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGYST 557 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + P + R ++ + L + ++ D R+ A +TGR Sbjct: 558 AVDVLEKLQGEHPIIDDILEYRQ-LAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGR 615 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLV 377 S QN+P + +R S+ ++ Sbjct: 616 LSSIDPNLQNIPIRLEEGRK-------------------------IRKAFKPTSKDSVIL 650 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA + ++ AF G D++ T + FNV QV R K + Sbjct: 651 SADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF 710 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 G++ + Sbjct: 711 --------------GIVYGISDYGLSQ------------------------------SLG 726 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + V + +++ + G Sbjct: 727 ITRKQAKAFIDDYLASFPGVKQYMSDI---VKDAKAQGYVETLLH--------------- 768 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R D+ + R +Q + DI+ M+ Sbjct: 769 --------RRRYIPDITSRNF---NLRSFAERTAMNTP------IQGSAADIIKLAMVKF 811 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670 ++ ++L VHDE++ E P ++ + S + +M +PLK + Sbjct: 812 SEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYG 869 Query: 671 KRY 673 + Sbjct: 870 ATW 872 >gi|261415194|ref|YP_003248877.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371650|gb|ACX74395.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327893|gb|ADL27094.1| DNA-directed DNA polymerase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 972 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 109/727 (14%), Positives = 194/727 (26%), Gaps = 177/727 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV---ELWDCVHDPVM------ 53 + ID ET + + + A D V H + Sbjct: 363 EIGIDTETDGLDPMQCNIVG--------LCLAAAAKDGSVPKGYYIPLGHTDDIGFPYPA 414 Query: 54 -----------PQVLKEALEN---------------TDVTI---VAHNSYFERTVLKACF 84 + + + D V HN+ F+ VL F Sbjct: 415 GKGGNFDFNATKKWFIDFWNDSCTLPGDISDSGSKQPDSAKRSLVFHNAKFDLHVLARTF 474 Query: 85 NLD---IPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 L I I TL+ A L + ++L +M + LI Sbjct: 475 GLTQKQIDSANIIDTLIAAWMLSPGQTGLGLDNQVMQLLQHEMIPIENLI---------- 524 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQ 190 + +R + EY D T ++ L K L + Sbjct: 525 GRGKKQITFNRTPIKDATEYGAEDAVYTLRLWAPLRAKLQKYDYEKYFFSQEMPLLKVLY 584 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G VD + L ++ KL++E+ + + ++L LF GL Sbjct: 585 QMEGVGAFVDTKILKKLQTDLEHRIEKLEKEICDMAGC-EFNIGSPKQLGEVLFDTLGLP 643 Query: 251 LEDLTETTCQRVLSSNK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 +T VL P V R + ++ L +N D + T Sbjct: 644 EIKKR-STDAAVLEELSFRSAHPIVFAVIEYR-ELKKMQSTYVSVLPTLVNPDTKRIHTS 701 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + TGR S QN+P S + +R+ Sbjct: 702 FIQWGTATGRLSSRDPNLQNIPVRS-------------------------DLGKQIRAAF 736 Query: 369 IAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + ++ D + IE R+LA ++G++ +++++ G D++ T A V+ VT D Sbjct: 737 VPQNPNNVILAVDYSQIELRMLAHLSGDEALIESYKEGIDIHARTAAAINRVSLEDVTAD 796 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R KV+ + Y A + L + + E ++ + F + Sbjct: 797 MRRDAKVVNFGVLYGMTAFRLSR-----DLKIPMAQAKSFIDGYFEMYQGVQKFIDDTKA 851 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + G R S++ + T G A K + Sbjct: 852 AAHRDGYVETLSGR--RRYIAGIDSSDRMESQM---AERMAVNTPVQGSAADLIKIAMI- 905 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + + + + L Sbjct: 906 --------------------RIQKRINDENLPLR-------------------------- 919 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 M+ DE+V E P +M+ M +PL A Sbjct: 920 -----MMLQVH-----------DELVFECPKDQVEALSAMVKSEMEGAME--LKVPLVAS 961 Query: 667 GYESKRY 673 K + Sbjct: 962 VGFGKNW 968 >gi|269958395|ref|YP_003328182.1| DNA polymerase I [Anaplasma centrale str. Israel] gi|269848224|gb|ACZ48868.1| DNA polymerase I [Anaplasma centrale str. Israel] Length = 849 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 94/662 (14%), Positives = 190/662 (28%), Gaps = 152/662 (22%) Query: 22 CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81 D + + +D +V K+ L + V V H++ +++ Sbjct: 323 YAKIADETINELSVAYDREHALTIRKEEVQNFMEVAKQILASDSVLKVVHDAK---LIMQ 379 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSALKAV-GEALKLSSQKMEEGKELIARFCKGETHE 140 + + ++++ S S ++ G + QK K Sbjct: 380 HF----PDLGVFDDVMLMSYSLDASSHDHSLTGMTYRYLHQK---------FPAKMACAL 426 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 + RLF Y ++ E+ L + + + G VD Sbjct: 427 VQLHSVMREKLLSDRLFTVY--------YQL----------ERPLVRVLYEMQEVGIEVD 468 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLT 255 + L++ L++E+ L + +L LF GL + + Sbjct: 469 TEILKQLSRDFHGSIRSLEREIYGLAGCK-FNVASARQLGKLLFERMGLSSSTKKMPSGS 527 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL+ + S+ ++ L+ + + T + A+ Sbjct: 528 YSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTERVHTSYSMVATA 587 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P S+ E +R +A EG K Sbjct: 588 TGRISSSNPNLQNIPIRSKEGTE-------------------------IRKAFVAREGHK 622 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 LV AD + +E +++A +AG Q AF G+D++ T + F + R K + Sbjct: 623 LVSADYSQMELKIMAHIAGVQAFRDAFAEGKDIHQVTAQQIFGDDVTD--PELRRRAKSI 680 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ A V Sbjct: 681 NF--------------GIIYGMSPFGLAKNV----------------------------- 697 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + + + + + + + + Sbjct: 698 -GITRQEATQYVEQYFRSYPEIKNYMEAIKAYARK------------------------- 731 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 GR + + + + R +Q + D++ + M+ Sbjct: 732 -YGYTRTAFGRKCYVPGINSAQHAIRGF---AERAAINAP------IQGTAADVVKKAMI 781 Query: 616 NATKAGY--DIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKR 672 N I+L VHDE++ E P++ N + L +M S+ +PL+ + Sbjct: 782 NLRDKLEVGTIILQVHDELLVEVPESHVDNVAQLMKEVMEGVASF--SVPLRVDIGVGNS 839 Query: 673 YR 674 + Sbjct: 840 WG 841 >gi|327439256|dbj|BAK15621.1| DNA polymerase I [Solibacillus silvestris StLB046] Length = 876 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 85/657 (12%), Positives = 183/657 (27%), Gaps = 130/657 (19%) Query: 31 ILFAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 + A + V + LK L++ +S + +++ Sbjct: 332 LGLALSDGERTVY----TAIDNVVDNADLKAWLQDETKKKYIVDSK-ATQAMLHRLGIEL 386 Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 L+ + + V K + + E I + KG + Sbjct: 387 KGVE-FDLLLASYILKPSISGDDVATLAKEFGYQDVQSNEAI--YGKGAKWVVPGADHVA 443 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 H + + + + ++ E E L ++ + G V++ + Sbjct: 444 EHVSRKAVAVWKLQPLLDQKLKENEQFELYKELELPLAHILGKMESEGITVNIDTLRQMG 503 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 + + ++ + L + ++L LF + GL + T+ +T VL Sbjct: 504 DDLKAKLEVMEATIYELAG-EKFNINSPKQLGVILFDKLGLPVIKKTKTGYSTAADVLEK 562 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + + R ++ + L++ ++ + T + TGR S Sbjct: 563 LQSEHDIVKYILEYR-TLAKLQSTYIEGLIKEVHKEDSKVHTRFQQALTSTGRLSSTNPN 621 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGI 384 QN+P + +R + + L AD + I Sbjct: 622 LQNIPIRLEEGRK-------------------------IRKAFVPSKKDWILFAADYSQI 656 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQG 443 E RVLA M G++ ++AF+ G D++ T FN+ P +VT R K + Sbjct: 657 ELRVLAHMCGDEALVEAFQQGMDIHTRTAMDVFNLENPDEVTSLMRRTAKAVNF------ 710 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G++ + + Sbjct: 711 --------GIVYGISDYGLSQSLDI------------------------------TRKEA 732 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + Q V + + ++ + Sbjct: 733 AIFIENYLQSFPGVKNYMDTSIEEAKKA--------------------------GFVTTI 766 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620 R D+ ++ R +Q + DI+ + M++ Sbjct: 767 LNRRRYLPDITSSNF---NLRSFAERTAMNTP------IQGSAADIIKKAMIDMNARLEQ 817 Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P + + +M + +PLK E + Sbjct: 818 EGLQTKLLLQVHDELIFEAPKEEIEILERIVPEVMENAIK--LSVPLKVEFSYGATW 872 >gi|84662708|ref|YP_453672.1| putative DNA polymerase I [Xanthomonas phage OP2] gi|84570757|dbj|BAE72819.1| putative DNA polymerase I [Xanthomonas oryzae phage OP2] Length = 658 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 172/704 (24%), Positives = 283/704 (40%), Gaps = 85/704 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60 LF+DFE S DL G+ +Y + F F +LW+ +P+ + Sbjct: 8 LFLDFEVASKTDLKAHGLARYLACPTTKPYCFTFVLPGMRQADLWEL--GQPIPRQILAH 65 Query: 61 LENTDVTIVAHNSYFERTVLK----ACFNLDIPI----HRWICTLVLARSNGLPSALKAV 112 + T VAHN+ F+ + D+P + C+ AR NGLP L Sbjct: 66 IA-AGKTFVAHNAAFDALIWNDVLPRWVKADLPQLNLRGQVQCSAARARYNGLPGGLGRA 124 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 EAL L QK EG + H E + +Y D V ++ Sbjct: 125 AEALGLPLQKDREGAAAMKELMHNPE------WTPATHPELFARTYKYALLDTDVMVALW 178 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + +P+ KEQ W LD IN RG+ VDV A + ++ + + +D E+E+ T G + + Sbjct: 179 EATQPMPPKEQLYWQLDLEINMRGFGVDVEAAEGMAEMAQLAQAMIDFEVETATQGKILT 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + ++++ G L++ + + +L+ + V R+ ASR+ K + Sbjct: 239 TSVIKQI-QSFAAGLGAELDEAGRESVKALLTR-DDVPEVLRDVLTLRLDASRAP-KKHD 295 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWS--GCVFPPQNLPRP--------SRSHEELDQI 342 ++ A + +GR+ + + GA + N+ RP + ++ + + Sbjct: 296 AILRA-HVNGRMCHSTVYHGALSGRSTAMGCGDVQLLNVARPRPGRKVKDTITYLDAARR 354 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + S PL ++D R A+ G LVVADL+GIEAR W+A ++ L Sbjct: 355 RDYDYLSRPEVGPPLAALADAQRHLFCATNPGCILVVADLSGIEARKGPWLANDEGMLVE 414 Query: 402 FETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 +E G D Y A F++ VT DQR IGK+ LAL + GG A MA GL L+ Sbjct: 415 YEQGIDGYKVEAATIFDLPDTDAVTSDQRQIGKITRLALQFGGGDGALDNMAKAYGLELS 474 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 ++ ++R+ H +S Sbjct: 475 E---------------------------------------DLRRKIVWSYRESHPALSTW 495 Query: 521 WNELHQAFEQTIE--NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG---- 574 W L A ++ ++ R +D L + LPSGR++ Y + Sbjct: 496 WASLEYAALIALDQPGRAVVVPIGRGLCTSATFVRDTTALRMELPSGRAISYHNARLVLE 555 Query: 575 -NNRSYLNTTTRQLTREYTYGGKLT-ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + + + T K+ N+ Q ++RD+ E M++ IV V+DE+ Sbjct: 556 PGASAPIAVYDKPNGVVETLDRKILSNNMTQGLARDLFWEAMLSVAPVE-QIVHHVYDEV 614 Query: 633 VCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + E P+ E L ++ P WA GLPL AEG+ S +RK Sbjct: 615 ILEVPEERAELRLKQLEARLSKAPLWAPGLPLGAEGFVSPYWRK 658 >gi|290890151|ref|ZP_06553233.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429] gi|290480195|gb|EFD88837.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429] Length = 911 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 95/654 (14%), Positives = 183/654 (27%), Gaps = 128/654 (19%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 AF + + ++ ++ L D+ N+ E VL L I Sbjct: 368 AFVVGNENDGYFASRDLELLNSLVVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLD- 425 Query: 94 ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 L+++ L + + + E + + +H Sbjct: 426 FDFLLVSYLLDTTDNDNQLATLANRFNVFLESDAEV-----YGSGVKFKIPENNETLFSH 480 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 ++ E E L + ++ G +D A L Q Sbjct: 481 MANKASTISKLHDPSMKKLSDHQQAELYRQIELPLSKVLASMEINGIKLDQAELKKLGQE 540 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267 D +L++++ + ++L LF + T+ +T VL Sbjct: 541 FDQRIFELEKQIYEEAGQ-EFNINSPKQLADLLFAHMKIPPIKKTKTGYSTAANVLEELA 599 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P + R ++ + L+E +N D T ++TGR S Q Sbjct: 600 EKYPFVGLILQYRQ-LAKLNSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQ 658 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEA 386 N+P + +R + S EG ++ +D + IE Sbjct: 659 NIPDRDEEGKR-------------------------IRKAFVPSHEGWEIFGSDYSQIEL 693 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA + G++ KAFE+GED++ T F ++ Q Sbjct: 694 RVLAHVTGDENLKKAFESGEDIHAATARSIFGLSTDQ----------------------- 730 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 K A NF + A + + Sbjct: 731 --------------------KITFDQRRRAKAVNFGIVYGISDFGLAQRLGTSRIEGKEI 770 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + + + +V + + + + + R Sbjct: 771 IQTYFHEFPKVKNWIDSIIALAHK--------------------------QGYVETIAQR 804 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620 D+ + R T +Q + DI+ M+ +A Sbjct: 805 RRYLPDIHSKNF---NLRSFAERTATNTP------IQGSAADIIKIAMIKMQQALDDNHL 855 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P + L +M S +PL+ E + + Sbjct: 856 KAKMLLQVHDELIFEAPKQEIDILEELVPKVMDSAVK--LNVPLRVEAHHGVNW 907 >gi|311031365|ref|ZP_07709455.1| DNA polymerase I [Bacillus sp. m3-13] Length = 877 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 89/657 (13%), Positives = 187/657 (28%), Gaps = 125/657 (19%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 + A + + + + + ++ LK ++ Sbjct: 331 ADIQGIALV--NETGNYFIPTEVALQSEEFAAFASDHKRKKTVFDAKRAIVALKW-KGIE 387 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + ++ + + E + E E + + KG + Sbjct: 388 LNGID-FDFIIASYIVNPSETSTDLAEIARKKGYYQIETDEAV--YGKGAKRAVPDQQKV 444 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 +H + K + ++LE E L + + G VD A + Sbjct: 445 ADHLVRKTFAMQEMKESFIHELKDNEQLELFEELEMPLTLVLGEMEALGIKVDKARLEEM 504 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 + + K+++++ L + ++L LF + GL T+ +T VL Sbjct: 505 GTDLGEKLEKIEEKIFDLAG-EKFNINSPKQLGVILFEKLGLPPVKKTKTGYSTSADVLE 563 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + Q+ + R + + L++ ++ D T ++TGR S Sbjct: 564 KLAEKHEVIQQILHYRQ-LGKLKSTYIEGLLKVIHEDSNKIHTRFNQALTQTGRLSSIDP 622 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAG 383 QN+P + +R I S E + AD + Sbjct: 623 NLQNIPVRLEEGRK-------------------------IREAFIPSHEDWVIFAADYSQ 657 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA +A ++ ++AF+ D++ T F+V+ +VT + R K + + Y Sbjct: 658 IELRVLAHIANDEKLIEAFKEDADIHTKTAMDVFHVSEDEVTSNMRRQAKAVNFGIVYGI 717 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + L + + E + + + + + Sbjct: 718 S-----DYGLSQSLGITRKDAKTFIDRYLESFPGVKEYMEDSVLDAKDKGYVTTL----- 767 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 +RR +P + Sbjct: 768 ------------------------------------LHRRRYLPEITSSNFNLRSF---- 787 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------ 617 R+ +NT +Q + DI+ + M++ Sbjct: 788 -----------AERTAMNTP------------------IQGSAADIIKKAMIDMANRLEE 818 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E P + + +M +PLK + + Sbjct: 819 ENMKSKVLLQVHDELVFEAPKDEIEKLKKIVPEVMEQAVE--LKVPLKVDYSYGSTW 873 >gi|116490731|ref|YP_810275.1| DNA polymerase I [Oenococcus oeni PSU-1] gi|116091456|gb|ABJ56610.1| DNA polymerase I [Oenococcus oeni PSU-1] Length = 903 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 95/654 (14%), Positives = 182/654 (27%), Gaps = 128/654 (19%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 AF + + ++ + L D+ N+ E VL L I Sbjct: 360 AFVVGNENDGYFASRDLELLNSSVVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLD- 417 Query: 94 ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 L+++ L + + + E + + +H Sbjct: 418 FDFLLVSYLLDTTDNDNQLATLANRFNVFLESDAEV-----YGSGVKFKIPENNETLFSH 472 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 ++ E E L + ++ G +D A L Q Sbjct: 473 MANKASTISKLHDPSMKKLSDHQQAELYRQIELPLSKVLASMEINGIKLDQAELKKLGQE 532 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267 D +L++++ + ++L LF + T+ +T VL Sbjct: 533 FDQRIFELEKQIYEEAGQ-EFNINSPKQLADLLFAHMKIPPIKKTKTGYSTAANVLEELA 591 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P + R ++ + L+E +N D T ++TGR S Q Sbjct: 592 EKYPFVGLILQYRQ-LAKLNSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQ 650 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEA 386 N+P + +R + S EG ++ +D + IE Sbjct: 651 NIPDRDEEGKR-------------------------IRKAFVPSHEGWEIFGSDYSQIEL 685 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA + G++ KAFE+GED++ T F ++ Q Sbjct: 686 RVLAHVTGDENLKKAFESGEDIHAATARSIFGLSTDQ----------------------- 722 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 K A NF + A + + Sbjct: 723 --------------------KITFDQRRRAKAVNFGIVYGISDFGLAQRLGTSRIEGKEI 762 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + + + +V + + + + + R Sbjct: 763 IQTYFHEFPKVKNWIDSIIALAHK--------------------------QGYVETIAQR 796 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620 D+ + R T +Q + DI+ M+ +A Sbjct: 797 RRYLPDIHSKNF---NLRSFAERTATNTP------IQGSAADIIKIAMIKMQQALDDNHL 847 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P + L +M S +PL+ E + + Sbjct: 848 KAKMLLQVHDELIFEAPKQEIDILEELVPKVMDSAVK--LNVPLRVEAHHGVNW 899 >gi|312793618|ref|YP_004026541.1| DNA polymerase i [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180758|gb|ADQ40928.1| DNA polymerase I [Caldicellulosiruptor kristjanssonii 177R1B] Length = 850 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 89/647 (13%), Positives = 190/647 (29%), Gaps = 147/647 (22%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI--PIHRWICT 96 D D + + + L++ V IV ++ + NL+ I Sbjct: 335 DQESNTVFVTRDGHLVEEI---LKSDTVKIV-----YDLKNIFHQLNLEDTDNIKNCEDV 386 Query: 97 LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156 ++ + + + +L + + I K + + + Sbjct: 387 MIASYVLDSTRS------SYELETLFVSYLNTDIEAVRKDKKIVSVVLLKRLWDELLR-- 438 Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 D+ + ++ + E+ L + + G+ VD + ++ + Sbjct: 439 -----LIDLNSCKFLY------ENIERPLIPVLYEMEKTGFKVDRDALLQYTKEIESKIL 487 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQA 273 KL+ ++ + + ++L LF + L + T+ +T VL Sbjct: 488 KLETQIYQIAG-EWFNINSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIV 546 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + + RM ++ L++A+N T + TGR + QN+P Sbjct: 547 PLILDYRMY-TKILTTYCQGLLQAINPSSGRVHTTFIQTGTATGRLASSDPNLQNIPVKY 605 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + +R + EG L+ AD + IE R+LA ++ Sbjct: 606 DEGK-------------------------LIRKVFVPEEGHVLIDADYSQIELRILAHIS 640 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF+ D++ T A F V A VT + R+ K + + Sbjct: 641 EDERLISAFKNNVDIHSQTAAEVFGVDIANVTPEMRSQAKAVNFGIV------------- 687 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ A + + ++ Sbjct: 688 -YGISD------------------------------YGLARDVKISRKEAAEFINKYFER 716 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + +V E + + N ++ R +D+ Sbjct: 717 YPKVKEYLDNTVKFARD--------------------------NGFVLTLFNRKRYVKDI 750 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLT 627 + R +Q + DI+ M+ + I+L Sbjct: 751 KSTN---RNLRGYAERIAMNSP------IQGSAADIMKLAMIKVYQKLKENNLKSKIILQ 801 Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE++ E P ++ + M + A +PL E E + Sbjct: 802 VHDELLIEAPYEEKDIVKRIVKREMENAV--ALKVPLVVEVKEGLNW 846 >gi|320103460|ref|YP_004179051.1| DNA polymerase I [Isosphaera pallida ATCC 43644] gi|319750742|gb|ADV62502.1| DNA polymerase I [Isosphaera pallida ATCC 43644] Length = 1040 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 105/721 (14%), Positives = 186/721 (25%), Gaps = 189/721 (26%) Query: 31 ILFAFGFDDHPVELWDCVHDP---VMPQV-----LKEALENTDVTIVAHNSYFERTVLKA 82 + A + + + P V+P L LEN + AH+ VLK Sbjct: 423 VGLALSSEPGRGWYFPFMGPPGATVIPAQTARDLLTPLLENPRIAWHAHDLKAHLRVLKR 482 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALK---AVGEA-LKLSSQKMEEGKELIARFCKGET 138 + +VL+ + + L + + E Sbjct: 483 H-GWTLAGKGV-DPMVLSYLLESGERNHTAPELAKRFLNHTLSRPPEPNASATTTRSKPK 540 Query: 139 HECLYDRNKPNHR-------------------------------------------EAWR 155 R++ Sbjct: 541 ANPKRGRSRSQADASEETNPDDETPDVVGLPQTTGTPPRDGFLVFADDPHQDGPAAVPPE 600 Query: 156 LFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAH 205 + + + + L + E+ L + + + G +D A Sbjct: 601 RLALWAVEWADASARLGQVLAQRVAAEGLERLYDTLERPLIEILADMEEAGVALDRARLR 660 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQR 261 L++ T L+++ L + +L+ LF GL T +T Q Sbjct: 661 QLSRDFSARLTDLERQAHQLAG-EPFNLSSPPQLRVILFERLGLPPRGKTPKGEASTAQE 719 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL L + +R + L+ L + DGR+R T G + TGR S Sbjct: 720 VLEELAALHQLPKVLLEHRR-IEKLKNTYLDALPNLTHPDGRIRATFNQ-GVTATGRLSS 777 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA--SEGKKLVVA 379 QN+P + VR +A + L+ A Sbjct: 778 SEPNLQNIPVRTEEGR-------------------------QVRQAFVAGDPARQVLLTA 812 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA + + L+AFE D++ A+ F VA VT DQR + K + Sbjct: 813 DYSQIELRVLAHFSRDPALLRAFEEDRDIHADVAAKIFGVALDSVTSDQRRMAKTVNF-- 870 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 GL+ A Sbjct: 871 ------------GVIYGLS------------------------------AHGLASRLGIS 888 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + A+ ++ V + T Sbjct: 889 QSEAAAFINAYFDQYPHVEAFMTRVLTQARDT--------------------------GR 922 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT- 618 + GR + + R ++Q + D++ M+ Sbjct: 923 VETLEGRRRAINGIKH---VEGRHRNLAERTAI------NTVIQGSAADLIKRAMIAVDQ 973 Query: 619 -----KAGYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672 K ++L +HDE++ E A ++ M + PLK + Sbjct: 974 RLKETKLPARMILQIHDELLFEVERDALTETARLVQEAMIHAAT--LETPLKVDLAAGPN 1031 Query: 673 Y 673 + Sbjct: 1032 W 1032 >gi|295425309|ref|ZP_06818012.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM 11664] gi|295065085|gb|EFG55990.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM 11664] Length = 887 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 100/676 (14%), Positives = 204/676 (30%), Gaps = 140/676 (20%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73 L G + D + F+ +D D + + +K LE+ + N Sbjct: 330 LEMLGANYHLADF--VGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV 380 Query: 74 YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 F+ V + + L+ + + +GE L K + Sbjct: 381 -FDLKRSMVGAHRLGIHTHGLDY-DMLLASYLVNNENNSNDLGEIAHL--YGDYSVKTDL 436 Query: 131 ARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189 + KG++ D ++ + A + E K + + ++ + E + Sbjct: 437 EVYGKGKSEHIPDDDDELFNHLASKINAIESLKKPLLEKLKDHEQDALFDTIEIPTARVL 496 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G V + L V+ +L+ ++ S + ++L LF + GL Sbjct: 497 ARMEMNGMKVKASTLIQLQNEFAVQLKELEDKIYSQAG-EKFNLNSPKQLGHILFEKLGL 555 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T+ +T VL K +P ++ + R ++ + L++ + DGR+ Sbjct: 556 PVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHT 614 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 + TGR S QN+P + + +R Sbjct: 615 RYLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRK 648 Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424 + + D + +E RVLA ++G+Q +AF+TG D++ T + F++ P V Sbjct: 649 AFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPKDV 708 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T R K + G++ + Sbjct: 709 TPLMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 734 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + +++ ++ + +A ++ E G A Sbjct: 735 ----------NLGISRKRAKEFIDNYFEQYPQIRDYM---DKAVQEAREKGYAETIMH-- 779 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 R D+ R +Q Sbjct: 780 ---------------------RRRYLPDIHAKNF---NVRSFAERTAINSP------IQG 809 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657 + DI+ M+N K +VL VHDE++ + P + + +M S Sbjct: 810 SAADIIKIAMINMQKKLEEMHLKTKMVLQVHDELIFDVPKDELETVKKIVPEVMQSAVR- 868 Query: 658 AKGLPLKAEGYESKRY 673 +PL A+ + Sbjct: 869 -LDVPLIADSGWGHNW 883 >gi|148544471|ref|YP_001271841.1| DNA polymerase I [Lactobacillus reuteri DSM 20016] gi|184153836|ref|YP_001842177.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112] gi|227363101|ref|ZP_03847236.1| DNA polymerase I [Lactobacillus reuteri MM2-3] gi|325682793|ref|ZP_08162309.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A] gi|148531505|gb|ABQ83504.1| DNA polymerase I [Lactobacillus reuteri DSM 20016] gi|183225180|dbj|BAG25697.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112] gi|227071819|gb|EEI10107.1| DNA polymerase I [Lactobacillus reuteri MM2-3] gi|324977143|gb|EGC14094.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A] Length = 888 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 92/644 (14%), Positives = 196/644 (30%), Gaps = 133/644 (20%) Query: 45 WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 D + + LK+ L++ V N+ + L + + L+ + Sbjct: 358 VDLLKEEP----LKDLLQSDSVKKNVFNAKAQIVGLHR-LGIPLENIN-FDLLLASYLLN 411 Query: 105 LPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 L V + + +E + D +H E Sbjct: 412 TNDNSNDLGQVAQEHGYDDVRTDE----EVYGKGAKRAVPDDDETFFSHLATKARAIEQL 467 Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + D+ + K+ + E L + + G VD + + ++++ + Sbjct: 468 RKDLFAKLDENKQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQ 527 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278 + + ++L LF + L + T+ +T VL +P Q+ Sbjct: 528 IYQEAG-EEFNINSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEKLADKSPIVEQILE 586 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L++ ++S+ + T ++TGR S QN+P Sbjct: 587 YRQ-IAKLQSTYITGLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGR- 644 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQW 397 +R + S EG ++ +D + +E RVLA + G++ Sbjct: 645 ------------------------LIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKN 680 Query: 398 KLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + F+ GED++ +T R F++AP ++ ++ R K + + Y Sbjct: 681 LQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAVNFGIVYGIS-----DYGLAQR 735 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++++ + E+ + + E+ + Sbjct: 736 IHVSRAEAHEFIQNYFHEFPGVKKYINDTIAFAKENGYVETIT----------------- 778 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 +RR +P ++ K Sbjct: 779 ------------------------HRRRYLPDIHAKSFNKRSF---------------AE 799 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 R+ +NT +Q + DI+ M+ ++L +HD Sbjct: 800 RTAMNT------------------PIQGSAADIIKIAMIRMQDELEKRHLKAKMILQIHD 841 Query: 631 EIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E P + S L +M S +PLK + + Sbjct: 842 ELVFEAPKEEIPVLSELVPKVMDSAVK--LDVPLKVDSKYGDTW 883 >gi|303257898|ref|ZP_07343907.1| DNA polymerase I [Burkholderiales bacterium 1_1_47] gi|302859241|gb|EFL82323.1| DNA polymerase I [Burkholderiales bacterium 1_1_47] Length = 891 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 94/682 (13%), Positives = 192/682 (28%), Gaps = 164/682 (24%) Query: 31 ILFAFGFDDHPVELWDCVHD---------PVMPQVLKEALENTDVTIVAHNSYFERTVLK 81 + AFG D +D ++ LE+ +++ + + V Sbjct: 331 VGVAFGTTDGKTSYVPIDNDVLLAQGLTLGTFKEIFGRVLEHKKPIKCGYDTKYMKHVFA 390 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGET 138 +++ ++ + + K LK E Sbjct: 391 N-VGINLAGVS-DDVMLESYVLEAHRSHTIEKLAANWLKYE-------------LRGEEE 435 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQELWY 187 + + + E+ V + + + + E L Sbjct: 436 LLGKGAKKLSFSQVSVEKAAEFASERVFIVSRLNRLFKKALSDDAKLEKIYRDIEMPLSD 495 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + G +D L ++ + +L+++ + ++L LF + Sbjct: 496 VLFKMEQNGVLIDTKLLDQQTAQLNTKARELEEQAFEVAG-ENFKLSSPKQLGEILFDKM 554 Query: 248 GL----HLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 G+ T +T + VLS + P A R ++ L + ++ Sbjct: 555 GVVLEGAKPKKTISGNYSTSEEVLSELAENYPLAKIALEYR-TITKLVTTYTEKLPKMVD 613 Query: 300 S-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 DGR+ T + A TGR S QN+P + + Sbjct: 614 PKDGRVHTTFEQAVA-VTGRLSSTNPNLQNIPIRTEEGRK-------------------- 652 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 VR I++ G KL+ AD + IE R++A ++ ++ ++AF+ ED++ T A F Sbjct: 653 -----VREAFISASGCKLISADYSQIELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFG 707 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 +VT + R I KV+ G++ Sbjct: 708 KERDKVTPNDRRIAKVINF--------------GLMYGMSPFGL---------------- 737 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 A + + + V + ++ + Sbjct: 738 --------------AKNLGIGRDEAKNYINKFFARFPGVHDYMERTRALADR--QGYVET 781 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 GR L ++ + R Sbjct: 782 TF------------------------GRRLWLPEIHAGGARRAAAER----------AAI 807 Query: 599 ENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASM-LYHLM 651 +Q + D++ M+ K ++L +HDE++ E P+ + L +M Sbjct: 808 NAPMQGTAADLIKLSMIAVQKWIEEKGLKSKLILQIHDELIMEVPEAEVDLVKENLPKIM 867 Query: 652 TSNPSWAKGLPLKAEGYESKRY 673 S +PL AE + Sbjct: 868 DSVTE--LHVPLIAEVGVGDNW 887 >gi|213581306|ref|ZP_03363132.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 437 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 75/446 (16%), Positives = 145/446 (32%), Gaps = 58/446 (13%) Query: 72 NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA 131 N ++R VL+ +++ T++ + +V + S K Sbjct: 1 NLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAGRHDMDSLSDRWLK---H 49 Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE--------- 182 + E ++ A G Y D VT ++ ++ P + Sbjct: 50 KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFEN 109 Query: 183 --QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 L + + G +D A+ H ++ + + +L+++ + + ++L+ Sbjct: 110 IEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIAG-EAFNLSSTKQLQ 168 Query: 241 TWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 T LF + G+ T +T + VL P + R ++ + L Sbjct: 169 TILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYR-GLAKLKSTYTDKLPL 227 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +N T + TGR S QN+P + Sbjct: 228 MINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR------------------ 269 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R IA E +V AD + IE R++A ++ ++ L AF G+D++ T A Sbjct: 270 -------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEV 322 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F + VT +QR K + L Y A + LN+ + E + Sbjct: 323 FGLPLDSVTGEQRRSAKAINFGLIYGMSA-----FGLSRQLNIPRKEAQKYMDLYFERYP 377 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTA 502 + + E + G Sbjct: 378 GVLEYMERTRAQAKEQGYVETLEGRR 403 >gi|238917003|ref|YP_002930520.1| DNA polymerase I [Eubacterium eligens ATCC 27750] gi|238872363|gb|ACR72073.1| DNA polymerase I [Eubacterium eligens ATCC 27750] Length = 894 Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 95/679 (13%), Positives = 204/679 (30%), Gaps = 135/679 (19%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVA-H 71 + K G+ E+ +I D + + + L + + +A Sbjct: 326 IEKIGLSIVREN-ELIAVGITLSDTEIYYIPVSGFVTESYLADRLSDVVSVASNRNIASA 384 Query: 72 NSYFERT-VLKACFNLDIPI---HRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEG 126 N + + + P+ +I T + A + + + S Sbjct: 385 NIK-DYLDIFEKDKINGYPLVSEKAFIDTAIAAYLLHPSNESYDYESLGREFLSLTYPSK 443 Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW 186 EL+ + + D + Y D +T ++ + E+ Sbjct: 444 TELLGKLSINKAVNEAEDNLIKYAC--LSSYAYYKCAD-KITEQLKSENMYELFETIEMP 500 Query: 187 YLDQTINDR--GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 + + G VD ++++ + + L++E+ + ++L LF Sbjct: 501 LIFVLFEMQQQGISVDKQALVDYSKVLGTKISVLEKEIYEAAG-EEFNINSPKQLGVILF 559 Query: 245 LETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 G+ T++ T VL P ++ R ++ + L + ++ D Sbjct: 560 ERLGMPNGKKTKSGYSTAADVLEKLAPDYPVVSKILEYRQ-LAKLKSTYADGLTQYISED 618 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 GR+ GT + TGR S QN+P + Sbjct: 619 GRIHGTFNQ-TITATGRISSTEPNLQNIPIRMEMGKA----------------------- 654 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R + +G + AD + IE R+LA M+G++ ++A+ + D++ T A+ F V Sbjct: 655 --IRKVFVPKDGFVFLDADYSQIELRILAHMSGDEKLIEAYNSSADIHRATAAQVFGVPL 712 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 +VT +QR K + G++ + + Sbjct: 713 EEVTDEQRRNAKAVNF--------------GIIYGMSSFGLSQDLSI------------- 745 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + + + + + + L E G ++ Sbjct: 746 -----------------SRKEAKEYIERYFASYPTIKTFIDGL---VSDAKEKGYSLTMY 785 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 R ++ ++ + R Sbjct: 786 N-----------------------RRREIPEIKSSNFMQRSF---GERVAMNAP------ 813 Query: 602 VQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSN 654 +Q + DI+ M+N A ++L VHDE++ ET + + + M + Sbjct: 814 IQGTAADIIKLAMINVYNALKEHNLRSRLILQVHDELLVETAEDEVDTVKQIMLDGMKNA 873 Query: 655 PSWAKGLPLKAEGYESKRY 673 S +PL+ + E K + Sbjct: 874 VS--LKVPLEVDLKEGKDW 890 >gi|312622336|ref|YP_004023949.1| DNA polymerase i [Caldicellulosiruptor kronotskyensis 2002] gi|312202803|gb|ADQ46130.1| DNA polymerase I [Caldicellulosiruptor kronotskyensis 2002] Length = 850 Score = 310 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 86/629 (13%), Positives = 187/629 (29%), Gaps = 144/629 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGE 114 ++E L++ V IV ++ + NL+ I ++ + + Sbjct: 350 IEEILKSDTVKIV-----YDLKNIFHQLNLEDTNNIKNCEDVMIASYVLDSTRS------ 398 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + +L + + I K + + + D+ + ++ Sbjct: 399 SYELETLFVSYLNTEIEAVRKDKKIVSVVLLKRLWDELLR-------LIDLNSCQFLY-- 449 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + E+ L + + G+ VD + ++ + KL+ ++ + + Sbjct: 450 ----ENIERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIAG-EWFNIN 504 Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF + L + T+ +T VL + + RM ++ Sbjct: 505 SPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMY-TKILTTYC 563 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++A+N T + TGR + QN+P + Sbjct: 564 QGLLQAINPSSGRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGK-------------- 609 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R + G L+ AD + IE R+LA ++ ++ + AF+ D++ Sbjct: 610 -----------LIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQ 658 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V A VT + R+ K + + G++ Sbjct: 659 TAAEVFGVDIADVTPEMRSQAKAVNFGIV--------------YGISD------------ 692 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 A + + +++ +V E + + Sbjct: 693 ------------------YGLARDIKISRKEAAEFINRYFERYPKVKEYIDNTVKFARD- 733 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 N ++ R +D+ + R Sbjct: 734 -------------------------NGFVLTLFNRKRYIKDIKSTN---RNLRGYAERIA 765 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ M+ + I+L VHDE++ E P ++ Sbjct: 766 MNSP------IQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVK 819 Query: 646 MLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + M + + +PL E E + Sbjct: 820 EIVKREMENAVT--LKVPLVVEVKEGLNW 846 >gi|224476781|ref|YP_002634387.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300] gi|222421388|emb|CAL28202.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300] Length = 876 Score = 310 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 96/686 (13%), Positives = 196/686 (28%), Gaps = 151/686 (22%) Query: 14 IDLTKCGICKYAED-----VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68 DL++ I ++ ++ F D H V + + P+ L E LEN Sbjct: 312 NDLSEASIHFEVDEGDYLTADILKFGIQADGHFV-VINAEQINDYPE-LVEWLENDQTRK 369 Query: 69 VAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAV-GEALKLSSQKMEEG 126 +++ L+I I ++ + ++ V Sbjct: 370 RVYDAK---KTYAEAHRLNIDIKNVSFDIMLASYILDPSRSIDDVYSVVHNYGQ------ 420 Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV--TVTREIFKRLEPLSSKEQ- 183 + + + E + D T ++ +LE + + Sbjct: 421 ----NYVAEEVNIYGKGRKRQIPEDEVLDTYIA-SILDAISESTPIMYDQLEEFNQLDLF 475 Query: 184 -----ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 L + + + G DV + + + + L + + ++ Sbjct: 476 ESLELPLARILGEMEELGIYTDVDELKEMEKEIQGKLDTLITRIHDAAG-EDFNINSPKQ 534 Query: 239 LKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 L LF L + T+ +T VL + P + R S+ + L Sbjct: 535 LGVVLFENLKLPVIKKTKTGYSTAVDVLEQLQGEHPIIDDILEYRQ-LSKLQSTYIEGLQ 593 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + + +D R+ A +TGR S QN+P Sbjct: 594 KVIQNDHRIHTHFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRR----------------- 635 Query: 356 PLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R G ++ AD + IE RVLA + ++ +KAF G D++ T Sbjct: 636 --------IRKAFKPAEPGNVILSADYSQIELRVLAHITQDESMIKAFREGHDIHTATAM 687 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 + F V P +V R K + + Y + L + A + + Sbjct: 688 KVFGVEPDEVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKAAKQFIDDYLDS 742 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + + + + ++ + Sbjct: 743 FPGVKQYMSDIVKDAKAKGYVETL------------------------------------ 766 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 +RR +P + + R+ +NT Sbjct: 767 -----LHRRRYIPDITSRNFNRRSF---------------AERTAMNT------------ 794 Query: 595 GKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SML 647 +Q + DI+ M+N K ++L VHDE++ E P+ + + + Sbjct: 795 ------PIQGSAADIIKLAMVNFDKEIKNKDFHAHLLLQVHDELIFELPEEEVEAFSAFI 848 Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRY 673 +M + +PL+ + + Sbjct: 849 EDIMDNAID--LDVPLQVDTNYGPTW 872 >gi|255003568|ref|ZP_05278532.1| DNA polymerase I [Anaplasma marginale str. Puerto Rico] gi|255004694|ref|ZP_05279495.1| DNA polymerase I [Anaplasma marginale str. Virginia] Length = 853 Score = 310 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 86/665 (12%), Positives = 181/665 (27%), Gaps = 158/665 (23%) Query: 22 CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81 D + + +D ++ L + V + H + ++ Sbjct: 327 HAKIADGTINELSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVH----DAKLIM 382 Query: 82 ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGET 138 F + + ++++ S +L + L+ Sbjct: 383 RHF---PDLGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLHQKFPARLACTLVQLHGVMRN 439 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198 + + E+ L + + + G Sbjct: 440 K-----------------------------LLLDRLFTVYYQLERPLVRVLYEMQEIGVE 470 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLED 253 VD + L+Q L++E+ L + +L LF GL + Sbjct: 471 VDTEILKQLSQDFHGSIRSLEKEIYDLAGCK-FNVASARQLGKLLFERMGLSSSAKKMPS 529 Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 + +T VL+ + S+ ++ L+ + + + T + + Sbjct: 530 GSYSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSMIS 589 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGR S QN+P S+ E +R +A EG Sbjct: 590 TATGRISSSNPNLQNIPIRSKEGTE-------------------------IRKAFVAREG 624 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 KLV AD + +E +++A +AG Q AF G+D+++ T + F + R K Sbjct: 625 HKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFGDGVTD--PELRRRAK 682 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + G++ A V Sbjct: 683 SINFG--------------IIYGMSPFGLAKNV--------------------------- 701 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + + + + + + + Sbjct: 702 ---GITRQEASQYVAQYFRSYPEIKNYMEAIKAYARK----------------------- 735 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 GR + + + +T R +Q + D++ + Sbjct: 736 ---YGYTRTAFGRKCYISGINSEQ---HTVRGFAERAAINAP------IQGTAADVVKKA 783 Query: 614 MMNATKA---GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYE 669 M+N G I+L VHDE++ E P++ + L +M ++ +PLK + Sbjct: 784 MINLRNKLEVGA-IILQVHDELLVEVPESHVDRVAKLMKEVMEGVANF--SVPLKVDIGV 840 Query: 670 SKRYR 674 + Sbjct: 841 GSSWG 845 >gi|332967876|gb|EGK06971.1| DNA-directed DNA polymerase I [Desmospora sp. 8437] Length = 881 Score = 310 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 101/688 (14%), Positives = 202/688 (29%), Gaps = 141/688 (20%) Query: 9 ET-RSPIDLTKCGICKYAE-------DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 ET L + G+ + E V+ A D +L+ ++ Sbjct: 308 ETKNWDEWLAQDGLALFLEMSGENYHRAEVL--AVALSDGKKQLFLEWGTAREWPGFRQW 365 Query: 61 LENTDVTIVAHNSYFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 L + D T V ++ V L+ W L+ + + + E Sbjct: 366 LRDPDRTKVC----YDVKATEVALKHQGLETDGFAW-DILLSSYLINASESGHELSEI-- 418 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + + + A + KG + H + + + Sbjct: 419 VDRKWGGGLPDDDAVYGKGVKRRRPEGKELAEHLARKARAIHRLQPLLEEELKENGLDSL 478 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E L + + +G VD +L + + +L +++ L + + Sbjct: 479 YLDLELPLARVLAKMEWQGVQVDRDRLQSLGEELKGRLEELTEKIFELAGT-EFNINSPK 537 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF + GL + T+ +T VL ++ + R + + L Sbjct: 538 QLGEILFDKLGLPVLKKTKTGYSTSADVLEKLAPQHEIVEEILHYRQ-VGKLISTYVEGL 596 Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 ++ ++ G++ A+ TGR S QN+P Sbjct: 597 LKEIDGETGKIHTRFNQAIAA-TGRLSSTDPNLQNIPIRLEEGRR--------------- 640 Query: 354 PDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + E ++ AD + IE RVLA ++G++ ++AF+ D++ T Sbjct: 641 ----------IRQVFVPSEEEWLMLSADYSQIELRVLAHLSGDENLIEAFQKELDVHTKT 690 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 F V+ +VT R K + + Y + LN+ Sbjct: 691 AMDVFGVSADEVTPWMRRHAKAVNFGIVYGIS-----DYGLSQNLNIPRKEAAEFIQRYF 745 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 + + + + + Sbjct: 746 DSYPGVKRYMEDIVRQAKADGYVTTM---------------------------------- 771 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 +RR++P + + R+ +NT Sbjct: 772 -------LHRRRELPEINSRNFNRRSF---------------AERTAMNTP--------- 800 Query: 593 YGGKLTENIVQAVSRDILAEGMMN----ATKAG--YDIVLTVHDEIVCETPDTDEFNASM 646 +Q + DI+ + M+ K G ++L VHDE++ ETP + Sbjct: 801 ---------IQGTAADIIKKAMVEMDSVLEKEGLRARLLLQVHDELIFETPAEEMEALDN 851 Query: 647 LY-HLMTSNPSWAKGLPLKAEGYESKRY 673 L +M S A +PL+ + K + Sbjct: 852 LVRRVMESAVELA--VPLQVDINTGKTW 877 >gi|210077511|gb|ACJ07020.1| PolI [Thermus sp. Fiji3.A1] Length = 831 Score = 310 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 99/610 (16%), Positives = 184/610 (30%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + VL LD+P ++LA + + V + + L+A Sbjct: 354 DLAVLALREGLDLPPS--DDPMLLAYLLDPSNTTPEGVARRYGGEWTEDAAQRALLAER- 410 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 +N E +++ +E S + + Sbjct: 411 --------LQQNLLERLEGEEKL-----------LWLYREVEKPLS------RVLAHMEA 445 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-LED 253 G +DVA L+ V+ E +L++E+ L + ++L+ LF E L L Sbjct: 446 TGVRLDVAYLKALSLEVEAELKRLEEEVYRLAGHP-FNLNSRDQLERVLFDELKLPALGK 504 Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 + +T VL + ++ P ++ +R S+ ++ L ++ GRL Sbjct: 505 TQKTGKRSTSAAVLEALREAHPIVEKILQHR-ELSKLKSTYIDPLPGLVHPRTGRLHTRF 563 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 564 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRKAF 597 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 +A EG LV D + IE RVLA ++G++ ++ F G+D++ T + F V V Sbjct: 598 VAEEGFLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTQTASWMFGVPLEAVDPRM 657 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 658 RRAAKTVNF--------------GVLYGMS------------------------------ 673 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + Q +V + + E + G Sbjct: 674 AHRLSQELAIPYEEAVAFIERYFQSFPKVRAW---IEKTLEGGRQRGYVETL-------- 722 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 723 ---------------FGRRRYVPDLNAR---VKSVREAAERMAFNMP------VQGTAAD 758 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE++ E P + L +M A +PL Sbjct: 759 LMKLAMVKLFPRLKETGARMLLQVHDELLLEAPKDRAEAVAALAKEVMEGVYPLA--VPL 816 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 817 EVEVGIGEDW 826 >gi|222475578|ref|YP_002563995.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida] gi|222419716|gb|ACM49739.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida] Length = 864 Score = 310 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 86/665 (12%), Positives = 181/665 (27%), Gaps = 158/665 (23%) Query: 22 CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81 D + + +D ++ L + V + H + ++ Sbjct: 338 HAKIADGTINELSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVH----DAKLIM 393 Query: 82 ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGET 138 F + + ++++ S +L + L+ Sbjct: 394 RHF---PDLGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLHQKFPARLACTLVQLHGVMRN 450 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198 + + E+ L + + + G Sbjct: 451 K-----------------------------LLLDRLFTVYYQLERPLVRVLYEMQEIGVE 481 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLED 253 VD + L+Q L++E+ L + +L LF GL + Sbjct: 482 VDTEILKQLSQDFHGSIRSLEKEIYDLAGCK-FNVASARQLGKLLFERMGLSSSAKKMPS 540 Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 + +T VL+ + S+ ++ L+ + + + T + + Sbjct: 541 GSYSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSMIS 600 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGR S QN+P S+ E +R +A EG Sbjct: 601 TATGRISSSNPNLQNIPIRSKEGTE-------------------------IRKAFVAREG 635 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 KLV AD + +E +++A +AG Q AF G+D+++ T + F + R K Sbjct: 636 HKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFGDGVTD--PELRRRAK 693 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + G++ A V Sbjct: 694 SINFG--------------IIYGMSPFGLAKNV--------------------------- 712 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + + + + + + + Sbjct: 713 ---GITRQEASQYVAQYFRSYPEIKNYMEAIKAYARK----------------------- 746 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 GR + + + +T R +Q + D++ + Sbjct: 747 ---YGYTRTAFGRKCYISGINSEQ---HTVRGFAERAAINAP------IQGTAADVVKKA 794 Query: 614 MMNATKA---GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYE 669 M+N G I+L VHDE++ E P++ + L +M ++ +PLK + Sbjct: 795 MINLRNKLEVGA-IILQVHDELLVEVPESHVDRVAKLMKEVMEGVANF--SVPLKVDIGV 851 Query: 670 SKRYR 674 + Sbjct: 852 GSSWG 856 >gi|159896602|ref|YP_001542849.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779] gi|159889641|gb|ABX02721.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779] Length = 953 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 116/709 (16%), Positives = 212/709 (29%), Gaps = 159/709 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-------VMPQV 56 L D ET S + V+ A H + Sbjct: 355 LIFDVETNSLNLFSPVP-------AKVVGIALTHTAGCGWYIPLGHRSGQQLPIAEVVAA 407 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 L+ + +VAHN F+ + L LD+P T + A G +LK + A Sbjct: 408 LQPLFSDPQKAVVAHNGKFDMSALS-LIGLDVPHLS-FDTAIAAALLGKRQSLKDLAFAE 465 Query: 117 KLSSQ----KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + +M + LI + + A Y DV +T + Sbjct: 466 LRDADDRPIEMTRIETLI----------GTGKKQITMDQVAIEQVTPYASADVDMTARLL 515 Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 P E L + + G +D A Q++ +++Q Sbjct: 516 ALFMPQLGAIPAVREVFEQIEMPLSPVLMRMEACGIGLDRAQLVQQGQVLGQSLREIEQH 575 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT------------ETTCQRVLSSN--K 267 + + L LF+ L +L + L Sbjct: 576 IADFVG-EPLNINSRFDLNDLLFIRLKLPTANLKRLAGTTRSGGAVYSVNAETLEDLQTH 634 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPP 326 + + R S+ ++ L+E +N GR+ + +GA TGR S Sbjct: 635 DQSGIVAMILRYRR-LSKLKSTYVDALIELINQQTGRVHTQYRQIGAE-TGRLSSDSPNL 692 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P S E +R +A G L+ AD + IE Sbjct: 693 QNIPVRSEEGRE-------------------------IRRAFVARPGHVLMTADYSQIEL 727 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA + + ++ F+TG+D++ T AR F++ +V+K+QR I K+ + Y Sbjct: 728 RVLAHITADPALVEVFKTGQDIHAATAARLFDIPMDEVSKNQRRIAKMTVFGIIYGIS-- 785 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 L+ N ++ +++ E + G Sbjct: 786 ---SFGLAARTALSRTEAQQMINGLFAQYPGLKSYIERTLERVKAVGYVETLFGR----- 837 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + + ++ +++G R+ +++ N + + Sbjct: 838 -RRYFRE------------------LQDGGVTGPRRS------AFEREATNAGIQGTAAD 872 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 + + +L + GG + ++Q Sbjct: 873 LIKLAMI------------RLEQALIAGGYQAKMLLQ----------------------- 897 Query: 627 TVHDEIVCETPDTDEFNASMLY-HLMTSN-PSWAKGLPLKAEGYESKRY 673 VHDE+V E P+ + + L MT P A +PL+ + Sbjct: 898 -VHDELVLEVPEDERDAVAQLVCDTMTQVYPDLA--VPLEVNVETGLNW 943 >gi|304316561|ref|YP_003851706.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778063|gb|ADL68622.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 867 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 93/677 (13%), Positives = 208/677 (30%), Gaps = 147/677 (21%) Query: 18 KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER 77 + V +F DD + V + + L+N +T++ H+ + Sbjct: 313 TLSFYPLILEGEVKAVSFATDDESFFV------EVDDYEVFKLLDNEKLTLIGHDIK-DF 365 Query: 78 TVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGE 137 V + +++ ++ T ++ + +G LK K L E Sbjct: 366 FVNLSYHGIELNC-KFYDTAIMTYLLNPSESNYDIGRVLK---------KYLKEDIPNIE 415 Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWY 187 K +L +Y + ++ +L + L Sbjct: 416 DMLGKGKSKKSYDDIDKKLLIDYLCATASKLSKLKDKLMSFIKEMEMEELLDNVELPLVE 475 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + +++ G+ +D + L++ + + K+ +++ + ++L +LF + Sbjct: 476 VLKSMEVYGFTLDKDVLKDLSKEIGEKTDKIIKDIYDAAGY-EFNINSTKQLSEFLFDKL 534 Query: 248 GLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 L T+ +T VL ++ R + ++ + M+ D ++ Sbjct: 535 NLPPIKKTKTGYSTDMEVLVELIPYNEIVGEIIEYRQ-LMKLKSTYIDGFMPIMDKDDKV 593 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 T + A+ TGR S QN+P + Sbjct: 594 HSTFKQTVAA-TGRISSTEPNLQNIPVRDEFGRR-------------------------I 627 Query: 365 RSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 R I+S +G +V AD + IE RVLA ++ + +++F ED+++ T + F +AP + Sbjct: 628 RKAFISSFQGGYIVSADYSQIELRVLAHLSEDIKLIESFLNNEDIHLRTASEVFKIAPEE 687 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y + L ++ ++ + ++ +N+ Sbjct: 688 VTGEMRRRAKAVNFGIVYGIS-----DYGLSRDLKISRKEAKEYIDNYFDRYKGVKNYID 742 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 + + E+ +R Sbjct: 743 SVVKFARENGYVTTI-----------------------------------------LNRR 761 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 R +P + K R +Q Sbjct: 762 RYIPEINSKNYNQRSFGE---------------------------RMAMNTP------IQ 788 Query: 604 AVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPS 656 + DI+ M+ ++L +HDE++ +T + +L +M + Sbjct: 789 GSAADIIKMSMVKVYNELKSRSLKSKLILQIHDELIVDTFPDEVEIVKNLLKTIMENVIK 848 Query: 657 WAKGLPLKAEGYESKRY 673 +PL + K + Sbjct: 849 --LRVPLVVDIGYGKNW 863 >gi|160880934|ref|YP_001559902.1| DNA polymerase I [Clostridium phytofermentans ISDg] gi|160429600|gb|ABX43163.1| DNA polymerase I [Clostridium phytofermentans ISDg] Length = 994 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 96/678 (14%), Positives = 193/678 (28%), Gaps = 148/678 (21%) Query: 19 CGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSYF 75 GI E+ ++ + + + C + L LE + F Sbjct: 438 VGIKLIMENKSLVGISVYYGSEASFIIPCEGFITPDFLTSKLNGLLEKKITLAI-----F 492 Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135 + N + + ++ + + ++ + Sbjct: 493 DIKKYLPYLNAN-EESPCFDVTIAGYLLEPDAS----------TYEYQTIAEKYLELDLP 541 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQEL 185 E + + + V I+ L L S E L Sbjct: 542 SEKEVFSGQTYASLSLLDQDQYKKAACYESYVAHHIYPVLLKLLSERGLLPLFAGIEMPL 601 Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 Y + RG VD + + V +L++++ L + ++L LF Sbjct: 602 VYTLYDMEQRGIRVDTNGLKDYSDQLGVSIVELEKQIFELVGV-EFNINSPKQLGEILFQ 660 Query: 246 ETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 GL T+ +T VL P + R ++ + LV + DG Sbjct: 661 RLGLSYGKKTKTGYSTSAEVLEKLSSEHPVIKLILQYRQ-LTKLKSTYADGLVSYVEGDG 719 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 R+ GT A+ TGR S QN+P + Sbjct: 720 RIHGTFNQTIAA-TGRLSSTEPNLQNIPIRMELGRK------------------------ 754 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R I +G + AD + IE R+LA M+ + ++A+ +D++ T + F+ Sbjct: 755 -IRKVFIPEDGYLFLDADYSQIELRLLAHMSNDARLIEAYRQAQDIHRLTASEVFHTPFD 813 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT QR+ K + + G++ + Sbjct: 814 EVTSAQRSNAKAVNFGIV--------------YGISSFSL-------------------- 839 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + E + + V + L + ++T Sbjct: 840 ----------GQDLDITRKEAEEYINKYFMTYPGVKTYLDGLIEEGKET----------- 878 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 ++ GR ++ N+ + R + Sbjct: 879 ---------------GVVKTLYGRIRPVPNLTNSNFMKRSAE---ERIAMNSP------I 914 Query: 603 QAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNP 655 Q + DI+ M++ K ++L +HDE++ ET +++ + + M Sbjct: 915 QGTAADIMKLAMIHVNQVLKERKLKSRLLLQIHDELLVETHESEVEEVAKIMKEEMQQAA 974 Query: 656 SWAKGLPLKAEGYESKRY 673 S +PL+ E + Sbjct: 975 S--LSVPLEVEVANGNNW 990 >gi|308276303|gb|ADO26202.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Corynebacterium pseudotuberculosis I19] Length = 886 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 100/667 (14%), Positives = 192/667 (28%), Gaps = 139/667 (20%) Query: 23 KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLK 81 D + A V D + L + L + H + +L Sbjct: 338 PATGDAEAL--AIADKQRHVIAVDLSDIDPQDEKALAQWLRSET-PKYLHEAKATFHMLS 394 Query: 82 ACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 ++ T + A + K + L + ET Sbjct: 395 ---GRGFELNGVAHDTAIAAYLLRPGQRTYDL---------KDVYQRHLQRQLSGDETQG 442 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYC 198 L + P+ E + +T+++ ++ EL + + G Sbjct: 443 QLSLLDAPDSEELIDSVIAILELAQELTKQLEDIDSFELYRDLELPLVLILARMEAAGIA 502 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256 VDV ++ + + ++ + ++L+ LF GL T+ Sbjct: 503 VDVETLEEQLKVFIERVQEHEAAARNIAGDPSLNLSSPKQLQVVLFETLGLPKTKKTKTG 562 Query: 257 -TTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 +T + + + P + L L++A+ SDGR+ T A Sbjct: 563 YSTAAKEIEALAVKHPDPFLDHLLAHRENQKLKTT-LEGLIKAVGSDGRIHTTFNQTVA- 620 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374 TGR S QN+P ++ +RS + EG Sbjct: 621 STGRLSSTEPNLQNIPVRTQDGRR-------------------------IRSAFVVGEGY 655 Query: 375 -KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 L+ AD + IE RV+A ++ + ++A+ GEDL+ +R F V QVT + R K Sbjct: 656 ETLLTADYSQIEMRVMAHLSEDPGLIEAYRQGEDLHNYVGSRVFEVPVDQVTPELRRRVK 715 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 M L GL+ Sbjct: 716 AMSYGLV--------------YGLS------------------------------AFGLG 731 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + +++ ++ ++ V + + + + + Sbjct: 732 QQLNIPAGEAKQIMTSYFERFGGVKQYLDNVVEQARK----------------------- 768 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + GR ++G++ R +Q + DI+ Sbjct: 769 ---DGFTSTLFGRRRYLPELGSDN---RVARENAERAALNAP------IQGTAADIIKVA 816 Query: 614 MMNAT----KAG--YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666 M+ KAG ++L VHDE+V E + + M + S +PL+ Sbjct: 817 MIRVDQELKKAGVVSRVLLQVHDELVVEIAPNELEQVREIVEKEMDAAIS--LRVPLEVS 874 Query: 667 GYESKRY 673 + Sbjct: 875 AGSGPNW 881 >gi|166031749|ref|ZP_02234578.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC 27755] gi|166028202|gb|EDR46959.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC 27755] Length = 875 Score = 310 bits (793), Expect = 6e-82, Method: Composition-based stats. Identities = 86/667 (12%), Positives = 183/667 (27%), Gaps = 153/667 (22%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSYFERTVL 80 +A + + FD+ + + + L + E+ + F+ Sbjct: 341 FANEAAIGGIGLCFDEEHAYCIEVTEQITKEFLLEKLSKLNESCGRFV-----MFDIKEA 395 Query: 81 KACFNLDIPIHRWICTLVLARSNGL---PSALKAVG-EALKLSSQKMEEGKELIARFCKG 136 + V A + V E L + +EE E + C Sbjct: 396 MKWLPIK-NQKHCFDATVAAYLLNPLKNDYTYEDVAREQLNI---VIEEKSEAYVKVCYE 451 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 E + +F E L + + G Sbjct: 452 AYTAFKGSDLLYKKLEETQ------------MLHLF------EDIEMPLVFTLYDMERNG 493 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 + + + ++L++E+ + + ++L LF + L T+ Sbjct: 494 IRAEGEALKVYSSQLGGRISELEKEIYEMAG-ESFNINSPKQLGVILFEKLLLPGSKKTK 552 Query: 257 T---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 + T VL P +V R ++ + LV + DGR+ Sbjct: 553 SGYSTAASVLDKLAPDYPIVSKVLEYRQ-LTKLKSTYADGLVNYIEEDGRIHSKFNQ-TI 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGR S QN+P +R + +G Sbjct: 611 TATGRISSTEPNLQNIPVRVELGR-------------------------LIRKVFVPEDG 645 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 V AD + IE RVLA +G+ ++A+ +D++ T ++ F++ +VT QR K Sbjct: 646 YIFVDADYSQIELRVLAHCSGDANLIEAYREEKDIHRITASQVFHIPFEEVTPLQRRNAK 705 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y + L+ Sbjct: 706 AVNFGIVYG-----ISSFGLSEDLS----------------------------------- 725 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + + + + + + ++ ++ Sbjct: 726 ----IGRKEAAKYIEDYFKTYPGIKTFLDDTVAHAKE----------------------- 758 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 ++ GR ++ ++ + R +Q + DI+ Sbjct: 759 ---MGYVVTLFGRRRPVPELSSSNFMQRSF---GERVAMNAP------IQGTAADIMKIA 806 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666 M+ + +VL VHDE++ E + + M S +PL+ + Sbjct: 807 MIGVNRRLKEQNLKSRLVLQVHDELLIEAYRPELPEVEKILREEMEQAAS--LDVPLEID 864 Query: 667 GYESKRY 673 + + + Sbjct: 865 MHTGENW 871 >gi|268319916|ref|YP_003293572.1| DNA polymerase I [Lactobacillus johnsonii FI9785] gi|262398291|emb|CAX67305.1| DNA polymerase I [Lactobacillus johnsonii FI9785] Length = 886 Score = 310 bits (793), Expect = 6e-82, Method: Composition-based stats. Identities = 100/665 (15%), Positives = 206/665 (30%), Gaps = 145/665 (21%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL- 86 + F+ + DPV+ Q L++ LE+ + N F+ + L Sbjct: 342 IEGFSLKVGNK----IYVSKDPVLLQENPLRKMLEDKTIKK---NV-FDIK--RTYVGLH 391 Query: 87 --DIPIHRWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 ++ L+ + + +GE L K + + KG+ Sbjct: 392 RLNLKAEGLDYDMLLASYLVNNENNSNDLGEVAHLYDD--YSVKTDLEVYGKGKKQAVPD 449 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDV 201 D H A E K + ++ + + E+ + + G V+ Sbjct: 450 DNEFFEHLAAKVAVIE--KLKTPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEA 507 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 ++ + L V+ +L+ ++ + ++L LF + GL T+ +T Sbjct: 508 SVLNQLGNDFAVKLQELEHKIYQQAG-EEFNLNSPKQLGHILFEKLGLPPIKKTKTGYST 566 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL K +P ++ + R ++ + L+E + DGR+ + TGR Sbjct: 567 SVEVLEQLKMKSPIVSEILDYRQ-IAKIQNTYVKGLLECIQPDGRIHTRYLQ-TLTATGR 624 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA--SEGKKL 376 S QN+P + + +R + +G Sbjct: 625 LSSVDPNLQNIPTRTNEGK-------------------------QIRKAFVPSTKDGYIF 659 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVM 435 D + +E RVLA ++G++ +AF++G D++ T + F++ P +VT R K + Sbjct: 660 -SCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAV 718 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ + Sbjct: 719 NF--------------GIVYGISDYGLSK------------------------------N 734 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + + + +++ ++ ++ A ++ ENG A Sbjct: 735 LGISRKQAKTFIENYFEQYPQIKNYMDD---AIKKARENGYAETIMH------------- 778 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 R D+ + R +Q + DI+ M+ Sbjct: 779 ----------RRRYLPDIHSKNF---NVRSFAERTAINSP------IQGSAADIIKIAMI 819 Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 N K +VL VHDE++ + P + + +M S +PL A+ Sbjct: 820 NMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIADSN 877 Query: 669 ESKRY 673 + Sbjct: 878 WGHNW 882 >gi|319802967|dbj|BAJ61823.1| Taq polymerase 1 [eukaryotic synthetic construct] gi|319802969|dbj|BAJ61824.1| Taq polymerase 1 [eukaryotic synthetic construct] Length = 829 Score = 310 bits (793), Expect = 6e-82, Method: Composition-based stats. Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + +VL L +P ++LA + + V Sbjct: 352 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 392 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 GE E +R + R L+G R ++ E+ L + + Sbjct: 393 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 443 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250 G +DVA L+ V E +L+ E+ L + ++L+ LF E GL Sbjct: 444 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 502 Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 E + +T VL + ++ P ++ R ++ ++ L + ++ GRL Sbjct: 503 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 561 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 562 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 595 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V V Sbjct: 596 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 655 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 656 RRAAKTINF--------------GVLYGMS------------------------------ 671 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + + Q +V + + E+ G Sbjct: 672 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 720 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 721 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 756 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE+V E P + L +M A +PL Sbjct: 757 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 814 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 815 EVEVGIGEDW 824 >gi|118828|sp|P19821|DPO1_THEAQ RecName: Full=DNA polymerase I, thermostable; AltName: Full=Taq polymerase 1 gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab gi|7246019|pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New Orientation For The Structure-Specific Nuclease Domain gi|157880198|pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex gi|155129|gb|AAA27507.1| DNA polymerase [Thermus aquaticus] Length = 832 Score = 310 bits (793), Expect = 6e-82, Method: Composition-based stats. Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + +VL L +P ++LA + + V Sbjct: 355 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 395 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 GE E +R + R L+G R ++ E+ L + + Sbjct: 396 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 446 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250 G +DVA L+ V E +L+ E+ L + ++L+ LF E GL Sbjct: 447 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 505 Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 E + +T VL + ++ P ++ R ++ ++ L + ++ GRL Sbjct: 506 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 564 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 565 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 598 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V V Sbjct: 599 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 658 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 659 RRAAKTINF--------------GVLYGMS------------------------------ 674 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + + Q +V + + E+ G Sbjct: 675 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 723 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 724 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 759 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE+V E P + L +M A +PL Sbjct: 760 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 817 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 818 EVEVGIGEDW 827 >gi|323140021|ref|ZP_08075033.1| DNA polymerase I [Methylocystis sp. ATCC 49242] gi|322394722|gb|EFX97311.1| DNA polymerase I [Methylocystis sp. ATCC 49242] Length = 833 Score = 310 bits (793), Expect = 7e-82, Method: Composition-based stats. Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + +VL L +P ++LA + + V Sbjct: 356 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 396 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 GE E +R + R L+G R ++ E+ L + + Sbjct: 397 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 447 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250 G +DVA L+ V E +L+ E+ L + ++L+ LF E GL Sbjct: 448 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 506 Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 E + +T VL + ++ P ++ R ++ ++ L + ++ GRL Sbjct: 507 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 565 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 566 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 599 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V V Sbjct: 600 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 659 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 660 RRAAKTINF--------------GVLYGMS------------------------------ 675 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + + Q +V + + E+ G Sbjct: 676 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 724 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 725 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 760 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE+V E P + L +M A +PL Sbjct: 761 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 818 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 819 EVEVGIGEDW 828 >gi|300858348|ref|YP_003783331.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41] gi|300685802|gb|ADK28724.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41] gi|302206066|gb|ADL10408.1| DNA polymerase I [Corynebacterium pseudotuberculosis C231] gi|302330617|gb|ADL20811.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1002] Length = 886 Score = 310 bits (793), Expect = 7e-82, Method: Composition-based stats. Identities = 100/667 (14%), Positives = 192/667 (28%), Gaps = 139/667 (20%) Query: 23 KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLK 81 D + A V D + L + L + H + +L Sbjct: 338 PATGDAEAL--AIADKQRHVIAVDLSDIDPQDEKALAQWLRSET-PKYLHEAKATFHMLS 394 Query: 82 ACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 ++ T + A + K + L + ET Sbjct: 395 ---GRGFELNGVAHDTAIAAYLLRPGQRTYDL---------KDVYQRHLQRQLSGDETQG 442 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYC 198 L + P+ E + +T+++ ++ EL + + G Sbjct: 443 QLSLLDAPDSEELIDSVIAILELAQELTKQLEDIDSFELYRDLELPLVLILARMEAAGIA 502 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256 VDV ++ + + ++ + ++L+ LF GL T+ Sbjct: 503 VDVETLEEQLKVFIERVQEHEAAARNIAGDPSLNLSSPKQLQVVLFETLGLPKTKKTKTG 562 Query: 257 -TTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 +T + + + P + L L++A+ SDGR+ T A Sbjct: 563 YSTAAKEIEALAVKHPDPFLDHLLAHRENQKLKTT-LEGLIKAVGSDGRIHTTFNQTVA- 620 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374 TGR S QN+P ++ +RS + EG Sbjct: 621 STGRLSSTEPNLQNIPVRTQDGRR-------------------------IRSAFVVGEGY 655 Query: 375 -KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 L+ AD + IE RV+A ++ + ++A+ GEDL+ +R F V QVT + R K Sbjct: 656 ETLLTADYSQIEMRVMAHLSEDPGLIEAYRQGEDLHNYVGSRVFEVPVDQVTPELRRRVK 715 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 M L GL+ Sbjct: 716 AMSYGLV--------------YGLS------------------------------AFGLG 731 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + +++ ++ ++ V + + + + + Sbjct: 732 QQLNIPAGEAKQIMTSYFERFGGVKQYLDNVVEQARK----------------------- 768 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + GR ++G++ R +Q + DI+ Sbjct: 769 ---DGFTSTLFGRRRYLPELGSDN---RVARENAERAALNAP------IQGTAADIIKVA 816 Query: 614 MMNAT----KAG--YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666 M+ KAG ++L VHDE+V E + + M + S +PL+ Sbjct: 817 MIRVDQELKKAGVVSRVLLQVHDELVVEIAPNELEQVREIVEKEMDAAIS--LRVPLEVS 874 Query: 667 GYESKRY 673 + Sbjct: 875 AGSGPNW 881 >gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus] Length = 832 Score = 310 bits (793), Expect = 7e-82, Method: Composition-based stats. Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + +VL L +P ++LA + + V Sbjct: 355 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 395 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 GE E +R + R L+G R ++ E+ L + + Sbjct: 396 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 446 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250 G +DVA L+ V E +L+ E+ L + ++L+ LF E GL Sbjct: 447 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 505 Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 E + +T VL + ++ P ++ R ++ ++ L + ++ GRL Sbjct: 506 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 564 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 565 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 598 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V V Sbjct: 599 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 658 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 659 RRAAKTINF--------------GVLYGMS------------------------------ 674 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + + Q +V + + E+ G Sbjct: 675 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 723 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 724 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 759 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE+V E P + L +M A +PL Sbjct: 760 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 817 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 818 EVEVGIGEDW 827 >gi|320106496|ref|YP_004182086.1| DNA polymerase I [Terriglobus saanensis SP1PR4] gi|319925017|gb|ADV82092.1| DNA polymerase I [Terriglobus saanensis SP1PR4] Length = 934 Score = 310 bits (793), Expect = 7e-82, Method: Composition-based stats. Identities = 98/658 (14%), Positives = 193/658 (29%), Gaps = 149/658 (22%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHR 92 DD+ L D +++AL++ + H + L + I Sbjct: 406 GLAADDNTALLLDLNAPEATA--IRDALKDPALPKTTH----DLKSLLHTAGQRGLEIAN 459 Query: 93 W-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 ++ + L V + ++ P Sbjct: 460 VAHDVMLYSYLINPTHGSHKLADVAARMG-------------QSITPLVKNQTPPATALP 506 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 A + E+ L+P + L + + G +D + ++ Sbjct: 507 EAASAIHRLAPALRIQAE-EGEL---LKPYEEIDLPLVPVLLRMEQVGCRIDSQVLRDMS 562 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL---TE--TTCQRVL 263 + V+ L + + +++ + ++L LF + L + +T Q VL Sbjct: 563 SKLAVDMDALAERIYAMSGHR-FNINSPKQLGDVLFNKMDLPKPMKYGKGKVVSTAQDVL 621 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 V R ++ L + + +GR+ T +G + TGR S Sbjct: 622 EELAAHHEAPALVLEYRQ-LAKLRSNYTEQLPQLADREGRVHTTFNQVG-TATGRLSSTN 679 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+P + E +R+ I +EG L+ AD + Sbjct: 680 PNLQNIPTRTALGRE-------------------------IRAAFIPAEGNVLLSADYSQ 714 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A + + L A+ TG+D++ T A F V P + K+ R K + + Sbjct: 715 IELRLMAHFSQDPLLLDAYRTGKDIHTITAAEVFEVDPETMDKETRNRAKAVNFGIV--- 771 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G++ A Sbjct: 772 -----------YGISPFGLAAQ------------------------------LGIPQGEA 790 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + +R++++ V+ + + T GK Sbjct: 791 KLYIERYRERYAGVTAF---IERTISDTRSTGKVSTL----------------------- 824 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----- 618 GR+ D+G+ R +Q + D++ M+ Sbjct: 825 FGRTRPIPDIGSRNP---NQRGFAERTA------VNTPLQGTAADMIKIAMLKIDAALTE 875 Query: 619 -KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRYR 674 K + L VHDE++ + P + + L L M S +P+ AE + +R Sbjct: 876 RKLATRMTLQVHDELLFDAPVGETEEVAALVKLEMEGVVS--LSIPIVAEVGKGPNWR 931 >gi|254995381|ref|ZP_05277571.1| DNA polymerase I [Anaplasma marginale str. Mississippi] Length = 850 Score = 310 bits (793), Expect = 7e-82, Method: Composition-based stats. Identities = 90/663 (13%), Positives = 185/663 (27%), Gaps = 154/663 (23%) Query: 22 CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81 D + + +D ++ L + V + H + ++ Sbjct: 324 HAKIADGTINELSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVH----DAKLIM 379 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIARFCKGETHE 140 F + + ++++ S S ++ A + QK C Sbjct: 380 RHF---PDLGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLHQKFPA-----RMACTLVQLH 431 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 + +F E+ L + + + G VD Sbjct: 432 GVMRNKLLLD-------------------RLFTVYY---QLERPLVRVLYEMQEIGVEVD 469 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLT 255 + L+Q L++E+ L + +L LF GL + + Sbjct: 470 TEILKQLSQDFHGSIRSLEKEIYDLAGCT-FNVASARQLGKLLFERMGLSSSAKKMPSGS 528 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL+ + S+ ++ L+ + + + T + ++ Sbjct: 529 YSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSMISTA 588 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P S+ E +R +A EG K Sbjct: 589 TGRISSSNPNLQNIPIRSKEGTE-------------------------IRKAFVAREGHK 623 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 LV AD + +E +++A +AG Q AF G+D+++ T + F + R K + Sbjct: 624 LVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFGDGVTD--PELRRRAKSI 681 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ A V Sbjct: 682 NFG--------------IIYGMSPFGLAKNV----------------------------- 698 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + + + + + + + Sbjct: 699 -GITRQEASQYVAQYFRSYPEIKSYMEAIKAYARK------------------------- 732 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 GR + + + +T R +Q + D++ + M+ Sbjct: 733 -YGYTRTAFGRKCYISGINSEQ---HTVRGFAERAAINAP------IQGTAADVVKKAMI 782 Query: 616 NATKA---GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESK 671 N G I+L VHDE++ E P++ + L +M ++ +PLK + Sbjct: 783 NLRNKLEVGA-IILQVHDELLVEVPESHVDRVAKLMKEVMEGVANF--SVPLKVDIGVGS 839 Query: 672 RYR 674 + Sbjct: 840 SWG 842 >gi|312875885|ref|ZP_07735875.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A] gi|311797366|gb|EFR13705.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A] Length = 850 Score = 310 bits (793), Expect = 7e-82, Method: Composition-based stats. Identities = 89/647 (13%), Positives = 188/647 (29%), Gaps = 147/647 (22%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI--PIHRWICT 96 D D + + + L++ V IV ++ + NL I Sbjct: 335 DQESNTVFVTRDRHLVEEI---LKSDTVKIV-----YDLKNIFHQLNLKDTDNIKNCEDV 386 Query: 97 LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156 ++ + + +L + + I K + + + Sbjct: 387 MIASYVLDSTRG------SYELETLFVSYLNTDIEAVRKDKKIVSVVLLKRLWDELLR-- 438 Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 D+ + ++ + E+ L + + G+ VD + ++ + Sbjct: 439 -----LIDLNSCKFLY------ENIERPLIPVLYEMEKTGFKVDRDALLQYTKEIESKIL 487 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQA 273 KL+ ++ + + ++L LF + L + T+ +T VL Sbjct: 488 KLETQIYQIAG-EWFNINSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIV 546 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + + RM ++ L++A+N T + TGR + QN+P Sbjct: 547 PLILDYRMY-TKILTTYCQGLLQAINPSSGRVHTTFIQTGTATGRLASSDPNLQNIPVKY 605 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + +R + EG L+ AD + IE R+LA ++ Sbjct: 606 DEGK-------------------------LIRKVFVPEEGHVLIDADYSQIELRILAHIS 640 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF+ D++ T A F V A VT + R+ K + + Sbjct: 641 EDERLISAFKNNVDIHSQTAAEVFGVDIANVTPEMRSQAKAVNFGIV------------- 687 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ A + + ++ Sbjct: 688 -YGISD------------------------------YGLARDVKISRKEAAEFINKYFER 716 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + +V E + + N ++ R +D+ Sbjct: 717 YPKVKEYLDNTVKFARD--------------------------NGFVLTLFNRKRYVKDI 750 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLT 627 + R +Q + DI+ M+ + I+L Sbjct: 751 KSTN---RNLRGYAERIAMNSP------IQGSAADIMKLAMIKVYQKLKENNLKSKIILQ 801 Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE++ E P ++ + M + A +PL E E + Sbjct: 802 VHDELLIEAPYEEKDIVKRIVKREMENAV--ALKVPLVVEVKEGLNW 846 >gi|116495190|ref|YP_806924.1| DNA polymerase I [Lactobacillus casei ATCC 334] gi|116105340|gb|ABJ70482.1| DNA polymerase I [Lactobacillus casei ATCC 334] Length = 881 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 93/669 (13%), Positives = 194/669 (28%), Gaps = 158/669 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL--------KACF 84 F + +K LE+ + + TV Sbjct: 339 IGFFIGTKEETYVSTDVTLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + +P L+ + +G+ + + +L Sbjct: 390 GVKLPDIA-FDVLLASYLINPDENSNDLGKI-----AEDHDYHDLPRDEDIYGKGA---K 440 Query: 145 RNKPNHREAWRLFGEYCKGDV------TVT--REIFKRLEPLSSKEQELWYLDQTINDRG 196 R P + + F K D +T E ++ + + E L + + +G Sbjct: 441 RQVPEDDKLFGQFAR--KSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQG 498 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 ++ + L++++ + + ++L LF + L + T+ Sbjct: 499 ITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTK 557 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL+ K +P + + R ++ + L++A D ++ Sbjct: 558 TGYSTSVDVLNELKSASPIVQDILDYR-GWAKLNSTYVVGLLKAQLPDHKIHTRYLQ-TL 615 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + S E Sbjct: 616 TQTGRLSSVDPNMQNIPARDE--------------------------GKIIRKAFVPSHE 649 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 G ++ +D + IE RVL+ ++G++ +AF+ G D++ T + F ++ P QVT D R Sbjct: 650 GWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQ 709 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K G++ + + Sbjct: 710 AKATNF--------------GIVYGISDYGLSQNI------------------------- 730 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ +V + ++ E+G Sbjct: 731 -----GISRKQAKAFIDGYFDQYPKVHDYM---DAMVKKAREDGYVETL----------- 771 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 R + + + R +Q + DI+ Sbjct: 772 ------------FHRRRYLPQIHSRNF---NLRKFAERTAMNTP------IQGSAADIIK 810 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664 M+ KA ++L VHDE++ E P+ + S L +M S +PLK Sbjct: 811 VAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLK 868 Query: 665 AEGYESKRY 673 E + + Sbjct: 869 VESHYGPTW 877 >gi|260103165|ref|ZP_05753402.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075] gi|260083024|gb|EEW67144.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075] Length = 887 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 100/676 (14%), Positives = 208/676 (30%), Gaps = 140/676 (20%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73 L G + D + F+ +D D + + +K LE+ + N Sbjct: 330 LEMLGANYHLADF--VGFSLKINDK----IYVSRDVDLLEEDNIKHILEDEKIKK---NV 380 Query: 74 YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 F+ V + + L+ + + +GE L K + Sbjct: 381 -FDLKRSMVGAHRLGIHTHGLDY-DMLLASYLVNNENNSNDLGEIAHL--YGDYSVKTDL 436 Query: 131 ARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189 + KG++ D ++ + A + E K + + ++ + E + Sbjct: 437 EVYGKGKSEHIPDDDDELFNHLASKVNAIESLKKTLLEKLKDHEQDALFDTIEIPTARVL 496 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G V+ + L V+ KL+ ++ + ++L LF + GL Sbjct: 497 ARMEMNGMKVETSTLIQLQNEFAVKLKKLEDKIYGQAG-EKFNLNSPKQLGHILFEKLGL 555 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T+ +T VL K +P ++ + R ++ + L++ + DGR+ Sbjct: 556 PVIKKTKTGYSTSVEVLDQLKTQSPIVSKILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHT 614 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 + TGR S QN+P + + +R Sbjct: 615 RYLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRK 648 Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424 + + D + +E RVLA ++G+Q +AF+TG D++ T + F++ P +V Sbjct: 649 AFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEV 708 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T R K + G++ + Sbjct: 709 TPLMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 734 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + +++ ++ + N +A ++ + G A Sbjct: 735 ----------NLGISRKRAQEFIDNYFEQYPQIKDYMN---KAVQEARDKGYAETIMH-- 779 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 R D+ + T R +Q Sbjct: 780 ---------------------RRRYLPDIHAKK---YTVRAFAERTAINSP------IQG 809 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657 + DI+ M+N K +V+ VHDE++ + P + + +M S Sbjct: 810 SAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEVMQSAVK- 868 Query: 658 AKGLPLKAEGYESKRY 673 +PL A+ + Sbjct: 869 -LDVPLIADSGWGHNW 883 >gi|227534792|ref|ZP_03964841.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187548|gb|EEI67615.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 881 Score = 309 bits (792), Expect = 9e-82, Method: Composition-based stats. Identities = 93/669 (13%), Positives = 194/669 (28%), Gaps = 158/669 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL--------KACF 84 F + +K LE+ + + TV Sbjct: 339 IGFFIGTKEETYVSTDVTLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + +P L+ + +G+ + + +L Sbjct: 390 GVKLPDIA-FDVLLASYLINPDENSNDLGKI-----AEDHDYHDLPRDEDIYGKGA---K 440 Query: 145 RNKPNHREAWRLFGEYCKGDV------TVT--REIFKRLEPLSSKEQELWYLDQTINDRG 196 R P + + F K D +T E ++ + + E L + + +G Sbjct: 441 RQVPEDDKLFGQFAR--KSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQG 498 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 ++ + L++++ + + ++L LF + L + T+ Sbjct: 499 ITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTK 557 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL+ K +P + + R ++ + L++A D ++ Sbjct: 558 TGYSTSVDVLNELKSASPIVQDILDYR-GWAKLNSTYVVGLLKAQLPDHKIHTRYLQ-TL 615 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + S E Sbjct: 616 TQTGRLSSVDPNMQNIPARDE--------------------------GKIIRKAFVPSHE 649 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 G ++ +D + IE RVL+ ++G++ +AF+ G D++ T + F ++ P QVT D R Sbjct: 650 GWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQ 709 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K G++ + + Sbjct: 710 AKATNF--------------GIVYGISDYGLSQNI------------------------- 730 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ +V + ++ E+G Sbjct: 731 -----GISRKQAKAFIDGYFDQYPKVHDYM---DAMVKKAREDGYVETL----------- 771 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 R + + + R +Q + DI+ Sbjct: 772 ------------FHRRRYLPQIHSRNF---NLRKFAERTAMNTP------IQGSAADIIK 810 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664 M+ KA ++L VHDE++ E P+ + S L +M S +PLK Sbjct: 811 VAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLK 868 Query: 665 AEGYESKRY 673 E + + Sbjct: 869 VESHYGPTW 877 >gi|301066754|ref|YP_003788777.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus casei str. Zhang] gi|300439161|gb|ADK18927.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus casei str. Zhang] Length = 881 Score = 309 bits (792), Expect = 9e-82, Method: Composition-based stats. Identities = 92/669 (13%), Positives = 195/669 (29%), Gaps = 158/669 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL--------KACF 84 F + +K LE+ + + TV Sbjct: 339 IGFFIGTKEETYVSTDVTLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + +P L+ + +G+ + + +L Sbjct: 390 GVKLPDIA-FDVLLASYLINPDENSNDLGKI-----AEDHDYHDLPRDEDIYGKGA---K 440 Query: 145 RNKPNHREAWRLFGEYCKGDV------TVTREIFKRLEPLSSKEQELWY--LDQTINDRG 196 R P + + F K D +T ++ K+ + + E+ + + +G Sbjct: 441 RQVPEDDKLFGQFAR--KSDALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQG 498 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 ++ + L++++ + + ++L LF + L + T+ Sbjct: 499 ITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTK 557 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL+ K +P + + R ++ + L++A D ++ Sbjct: 558 TGYSTSVDVLNELKSASPIVQDILDYR-GWAKLNSTYVVGLLKAQLPDHKIHTRYLQ-TL 615 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + S E Sbjct: 616 TQTGRLSSVDPNMQNIPARDE--------------------------GKIIRKAFVPSHE 649 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 G ++ +D + IE RVL+ ++G++ +AF+ G D++ T + F ++ P QVT D R Sbjct: 650 GWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQ 709 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K G++ + + Sbjct: 710 AKATNF--------------GIVYGISDYGLSQNI------------------------- 730 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ +V + ++ E+G Sbjct: 731 -----GISRKQAKAFIDGYFDQYPKVHDYM---DAMVKKAREDGYVETL----------- 771 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 R + + + R +Q + DI+ Sbjct: 772 ------------FHRRRYLPQIHSRNF---NLRKFAERTAMNTP------IQGSAADIIK 810 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664 M+ KA ++L VHDE++ E P+ + S L +M S +PLK Sbjct: 811 VAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIVQLSELVPKVMDSAVH--LDVPLK 868 Query: 665 AEGYESKRY 673 E + + Sbjct: 869 VESHYGPTW 877 >gi|416913|sp|Q04957|DPO1_BACCA RecName: Full=DNA polymerase I; Short=POL I gi|912445|dbj|BAA02361.1| DNA polymerase [Bacillus caldotenax] Length = 877 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 86/668 (12%), Positives = 181/668 (27%), Gaps = 142/668 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82 D ++ A + + + L + S F+ V Sbjct: 328 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 381 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ + L+ A + V A KM++ + + Sbjct: 382 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 433 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196 R P+ + R E+ + + EQ L + + G Sbjct: 434 -KRAVPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 492 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + + + + ++Q + L + ++L LF + L + ++ Sbjct: 493 VKVDTKRLEQMGEELAEQLRTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKSK 551 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + + + + + L++ + D + T+ Sbjct: 552 TGYSTSADVLEKLAPYHEIVENILQHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 611 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372 ++TGR S QN+P + +R + SE Sbjct: 612 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 646 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 647 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 706 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ A Sbjct: 707 KAVNF--------------GIVYGISDYGLAQ---------------------------- 724 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + V ++ + G Sbjct: 725 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 769 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R D+ + R +Q + DI+ + Sbjct: 770 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 807 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ + ++L VHDE++ E P + L +M + +PLK Sbjct: 808 AMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 865 Query: 666 EGYESKRY 673 + + + Sbjct: 866 DYHYGSTW 873 >gi|315640780|ref|ZP_07895882.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952] gi|315483535|gb|EFU74029.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952] Length = 881 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 90/661 (13%), Positives = 199/661 (30%), Gaps = 134/661 (20%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86 ++ FA+ + + + + D + + + L++ L + T ++ L Sbjct: 335 EIVGFAWS-NGNRIYVTDNLS---LLEDNALQDWLFDAKRTKSVFDAKRTTVALHRYVGS 390 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 P +L+ + + + E + A + KG L + N Sbjct: 391 --PNGIQFDSLLACYLLDTNDSSNDLALVAH--RYGLTEIETDEAVYGKGAKK-GLPEDN 445 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALA 204 + + R K D ++ E+ ++ + E L ++ + G VD Sbjct: 446 ERFYSHLARKVATMQKLDTKLSDELVEKGQWTLYKEMELPLSFILAEMEITGIHVDAQRL 505 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + +++++ + + ++L LF + GL + T+ +T Sbjct: 506 IAMKSEFATKLHDIEEKIYAQ-ANERFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVD 564 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL K P + R ++ + L+ + SDG++ ++TGR S Sbjct: 565 VLEQLKVQAPIVEDILTYRQ-IAKIQSTYVEGLLRMIQSDGKVHTRYVQ-TLTQTGRLSS 622 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVAD 380 QN+P + +R + + + +D Sbjct: 623 VDPNLQNIPIRLEEGRK-------------------------IRQAFVPRNKNWVIYSSD 657 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELAL 439 + IE RVLA ++ ++ AF G+D++ +T R F + VT + R K + Sbjct: 658 YSQIELRVLAHISKDEHLQAAFIEGQDIHTSTAMRVFGLESAEDVTPNMRRQAKAVNF-- 715 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 G++ + Sbjct: 716 ------------GIVYGISDYGLSQ------------------------------NLGIT 733 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 ++ + +++ V + + ++ + Sbjct: 734 RKQAQQYIDTYFERYPGVKAYMENVVEQAKK--------------------------DGY 767 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + R D+ R +Q + DIL M+ K Sbjct: 768 VETLYHRRRYLPDLYAKN---YNIRSFAERTAINSP------IQGSAADILKIAMIEMNK 818 Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672 ++L VHDE+V E P+ + + L +M + A +PL + + Sbjct: 819 RLKEEKLAATMLLQVHDELVFEVPEEELAHVDQLVKEVMEHAVTLA--IPLVTDSNWGET 876 Query: 673 Y 673 + Sbjct: 877 W 877 >gi|260588620|ref|ZP_05854533.1| DNA polymerase I [Blautia hansenii DSM 20583] gi|260541095|gb|EEX21664.1| DNA polymerase I [Blautia hansenii DSM 20583] Length = 880 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 86/679 (12%), Positives = 187/679 (27%), Gaps = 148/679 (21%) Query: 19 CGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH------- 71 GI E ++ + + E++ + + + + L Sbjct: 322 VGIELLEEKGQILGLGLAWGEEETEVYSILPQGFVTE---DYLIEKTQEFCQQGKLIASL 378 Query: 72 NSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALK---LSSQKMEE 125 N + +L + + A + + +++ Sbjct: 379 NIK----AMLRYMDLK-SHNDMFDAGLAAYLLNPLKSEYTYDDIAKEFLGEMFPAKEDLL 433 Query: 126 GK-ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 GK I + E R +E++ E Sbjct: 434 GKLSYIKAANEKEEELAKSVCYMAYTALKSRTSLLEALE-KENMKELYT------DMEMP 486 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G V+ + + V L++E+ + ++L LF Sbjct: 487 LLFTLADMEKEGILVEAEALKEYGEKLQVRIEALEKEIWEQAG-EEFNINSPKQLGVILF 545 Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + L T+ +T VL + R ++ + L + D Sbjct: 546 EKLELPGGKKTKTGYSTAADVLEKLAPEHKLVADILEYRQ-LTKLKSTYADGLANYIAED 604 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 GR+ T + TGR S QN+P + Sbjct: 605 GRIHSTFNQ-TITATGRISSTEPNLQNIPVRTELGR------------------------ 639 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R I +G + AD + IE RVLA M+G++ ++A++ +D++ T ++ F++ Sbjct: 640 -LLRKVFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITASQVFHIPF 698 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 +VT QR K + + Y + L+ Sbjct: 699 DEVTPLQRRNAKAVNFGIVYG-----ISSFGLSQDLS----------------------- 730 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + +++ Q + ++ + L + ++ Sbjct: 731 ----------------ISRKEAAQYIESYFQTYPKIKGFLDGLVEEAKE----------- 763 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 + R ++ ++ + R Sbjct: 764 ---------------KGYVSTLFHRRRPVPELKSSNFMQRS---FGERVAMNSP------ 799 Query: 602 VQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN 654 +Q + DI+ M+ K +VL VHDE++ ET + S + M Sbjct: 800 IQGTAADIIKIAMIRVNKRLKEENLKSRLVLQVHDELLIETAKEEVEQVSAILEQEMKEA 859 Query: 655 PSWAKGLPLKAEGYESKRY 673 + L+ + + + + Sbjct: 860 AH--LSVALEIDMHTGENW 876 >gi|315038863|ref|YP_004032431.1| DNA polymerase [Lactobacillus amylovorus GRL 1112] gi|312276996|gb|ADQ59636.1| DNA polymerase [Lactobacillus amylovorus GRL 1112] Length = 887 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 100/676 (14%), Positives = 209/676 (30%), Gaps = 140/676 (20%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73 L G + D + F+ +D D + + +K LE+ + N Sbjct: 330 LEMLGANYHLADF--VGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV 380 Query: 74 YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 F+ V + + L+ + + +GE L K + Sbjct: 381 -FDLKRTMVAAHRLGIHTQGLDY-DMLLASYLINNENNSNDLGEIAHL--YGDYSVKTDL 436 Query: 131 ARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189 + KG++ D ++ + A + E K ++ + ++ + E + Sbjct: 437 EVYGKGKSEHIPDDDDELFNHLASKVNAIEKLKPELLKKLKEHEQDALFDTIEIPTARVL 496 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G V+ + L V+ +L+ ++ S + ++L LF + GL Sbjct: 497 ARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQAG-EKFNLNSPKQLGHILFEKLGL 555 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T+ +T VL K +P ++ + R ++ + L++ + DGR+ Sbjct: 556 PVIKKTKTGYSTSVEVLDQLKMQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHT 614 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 + TGR S QN+P + + +R Sbjct: 615 RYLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRK 648 Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424 + + D + +E RVLA ++G+Q +AF+TG D++ T + F++ P QV Sbjct: 649 AFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQV 708 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T R K + G++ + Sbjct: 709 TPLMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 734 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + +++ ++ + +A ++ + G A Sbjct: 735 ----------NLGISRKRAQEFIDNYFEQYPQIKDYM---DKAVQEARDKGYAETIMH-- 779 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 R D+ + T R +Q Sbjct: 780 ---------------------RRRYLPDIHAKK---YTVRAFAERTAINSP------IQG 809 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657 + DI+ M+N K +V+ VHDE++ + P + + +M S Sbjct: 810 SAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK- 868 Query: 658 AKGLPLKAEGYESKRY 673 +PL A+ + Sbjct: 869 -LDVPLIADSGWGHNW 883 >gi|300856524|ref|YP_003781508.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528] gi|300436639|gb|ADK16406.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528] Length = 876 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 97/684 (14%), Positives = 201/684 (29%), Gaps = 163/684 (23%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDV 66 D E+ S + K I ++ + + ++ K EN + Sbjct: 335 DEESYSRNYIDKVFISLNEKNFQI----------HINEIYNEDKNKAVELFKLLFENEGI 384 Query: 67 TIVAHNSYFERTV----LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + V ++ V L + + + A + Sbjct: 385 SKVG----YDVKVPCSILYKMGIRFLKLE--FDIKIAAYLIDSSRS-------------- 424 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--S 180 E K++I + E D K +E Y +T++I + Sbjct: 425 DYELKDIIR---QYTGVEISEDDEKFFSKETVLFSKVYS----ELTKKIEEAHMEELLYK 477 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 EQ L Y+ ++ G+ VD +E K+ +E+ SL+ + ++L Sbjct: 478 VEQPLIYVLASMECEGFKVDKDKLVEQEGKFKIEIDKVQKEIYSLSE-EEFNINSPKQLG 536 Query: 241 TWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + L + T+ +T VL K P ++ R ++ + L Sbjct: 537 KILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIVEKIIYYRQ-LTKLYSTYIEGLKAV 595 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 + D ++ + + TGR S QN+P +E Sbjct: 596 IQEDDKIHSSFNQTVTT-TGRLSSTEPNLQNIPIKYEMGKE------------------- 635 Query: 358 QIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R + E ++ AD + IE RVLA +A ++ + AF D++ T + Sbjct: 636 ------IRKIFVPENEDCVILSADYSQIELRVLAHIADDENLISAFINHSDIHTKTASEV 689 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F V +VT QR+ K + + G+ + Sbjct: 690 FKVPIDEVTSAQRSNAKAVNFGIV--------------YGIGDFSL-------------- 721 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 A + + +++ +V +++ + + Sbjct: 722 ----------------AKNLKISRKEAKLYIDTYFERYPKVKLYMDDIVKEAK------- 758 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 N + R ++ ++ + + R Sbjct: 759 -------------------VNSYVTTLMNRRRFIPEIKSSNKIVRSF---GERLAMNTP- 795 Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYH 649 +Q + DI+ M+N + ++L VHDE++ + N ++ Sbjct: 796 -----IQGSAADIIKIAMVNVYRRLEENKLKSKLILQVHDELILNVYKEEIDNVKSVVKE 850 Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673 M +PL+ + + Sbjct: 851 EMEKVLQ--LKVPLEVDISVGSNW 872 >gi|227889520|ref|ZP_04007325.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] gi|227849998|gb|EEJ60084.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] Length = 886 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 100/665 (15%), Positives = 207/665 (31%), Gaps = 145/665 (21%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL- 86 + F+ + DPV+ Q L++ LE+ + N F+ + L Sbjct: 342 IEGFSLKVGNK----IYVSKDPVLLQENLLRKMLEDKTIKK---NV-FDIK--RTYVGLH 391 Query: 87 --DIPIHRWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 ++ L+ + + +GE L K + + KG+ Sbjct: 392 RLNLKAEGLDYDMLLASYLVNNENNSNDLGEVAHLYDD--YSVKTDLEVYGKGKKQAVPD 449 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW--YLDQTINDRGYCVDV 201 D H A E K + ++ + + E+ ++ + G V+ Sbjct: 450 DNEFFEHLAAKVAVIE--KLKTPLLEKLKDHEQDDLYETIEIPAAFVLAKMEITGIKVEA 507 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 ++ + L V+ +L+ ++ + ++L LF + GL T+ +T Sbjct: 508 SVLNQLGNDFAVKLQELEHKIYQQAG-EEFNLNSPKQLGHILFEKLGLPPIKKTKTGYST 566 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL K +P ++ + R ++ + L+E + DGR+ + TGR Sbjct: 567 SVEVLEQLKMKSPIVSEILDYRQ-IAKIQNTYVKGLLECIQPDGRIHTRYLQ-TLTATGR 624 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA--SEGKKL 376 S QN+P + + +R + +G Sbjct: 625 LSSVDPNLQNIPTRTNEGK-------------------------QIRKAFVPSTKDGYIF 659 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVM 435 D + +E RVLA ++G++ +AF++G D++ T + F++ P +VT R K + Sbjct: 660 -SCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAV 718 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ + Sbjct: 719 NF--------------GIVYGISDYGLSK------------------------------N 734 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + + + +++ ++ ++ A ++ ENG A Sbjct: 735 LGISRKQAKTFIENYFEQYPQIKNYMDD---AIKKARENGYAETIMH------------- 778 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 R D+ + R +Q + DI+ M+ Sbjct: 779 ----------RRRYLPDIHSKNF---NVRSFAERTAINSP------IQGSAADIIKIAMI 819 Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 N K +VL VHDE++ + P + + +M S +PL A+ Sbjct: 820 NMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIADSN 877 Query: 669 ESKRY 673 + Sbjct: 878 WGHNW 882 >gi|56417214|ref|YP_154288.1| DNA polymerase I [Anaplasma marginale str. St. Maries] gi|56388446|gb|AAV87033.1| DNA polymerase [Anaplasma marginale str. St. Maries] Length = 864 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 90/663 (13%), Positives = 185/663 (27%), Gaps = 154/663 (23%) Query: 22 CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81 D + + +D ++ L + V + H + ++ Sbjct: 338 HAKIADGTINELSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVH----DAKLIM 393 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIARFCKGETHE 140 F + + ++++ S S ++ A + QK C Sbjct: 394 RHF---PDLGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLHQKFPA-----RMACTLVQLH 445 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 + +F E+ L + + + G VD Sbjct: 446 GVMRNKLLLD-------------------RLFTVYY---QLERPLVRVLYEMQEIGVEVD 483 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLT 255 + L+Q L++E+ L + +L LF GL + + Sbjct: 484 TEILKQLSQDFHGSIRSLEKEIYDLAGCT-FNVASARQLGKLLFERMGLSSSAKKMPSGS 542 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL+ + S+ ++ L+ + + + T + ++ Sbjct: 543 YSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSMISTA 602 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P S+ E +R +A EG K Sbjct: 603 TGRISSSNPNLQNIPIRSKEGTE-------------------------IRKAFVAREGHK 637 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 LV AD + +E +++A +AG Q AF G+D+++ T + F + R K + Sbjct: 638 LVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFGDGVTD--PELRRRAKSI 695 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ A V Sbjct: 696 NFG--------------IIYGMSPFGLAKNV----------------------------- 712 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + + + + + + + Sbjct: 713 -GITRQEASQYVAQYFRSYPEIKNYMEAIKAYARK------------------------- 746 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 GR + + + +T R +Q + D++ + M+ Sbjct: 747 -YGYTRTAFGRKCYISGINSEQ---HTVRGFAERAAINAP------IQGTAADVVKKAMI 796 Query: 616 NATKA---GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESK 671 N G I+L VHDE++ E P++ + L +M ++ +PLK + Sbjct: 797 NLRNKLEVGA-IILQVHDELLVEVPESHVDRVAKLMKEVMEGVANF--SVPLKVDIGVGS 853 Query: 672 RYR 674 + Sbjct: 854 SWG 856 >gi|191638699|ref|YP_001987865.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23] gi|190713001|emb|CAQ67007.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23] Length = 881 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 90/667 (13%), Positives = 193/667 (28%), Gaps = 154/667 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL--------KACF 84 F + +K LE+ + + TV Sbjct: 339 IGFFIGTKEETYVSTDITLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + +P L+ + +G+ + + +L Sbjct: 390 GVKLPDIA-FDVLLASYLINPDENSNDLGKI-----AEDHDYHDLPRDEDIYGKGA---K 440 Query: 145 RNKPNHREAWRLFGEYC----KGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYC 198 R P + + F +T ++ K+ + + E+ + + +G Sbjct: 441 RQVPEDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGIT 500 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256 ++ + L++++ + + ++L LF + L + T+ Sbjct: 501 LNAKTLKAMGTEFSQSIKILEEKIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTG 559 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL+ K +P + + R ++ + L++A D ++ ++ Sbjct: 560 YSTSVDVLNELKSASPIVQDILDYR-GWAKLNSTYVVGLLKAQLPDHKIHTRYLQ-TLTQ 617 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374 TGR S QN+P +R + S EG Sbjct: 618 TGRLSSVDPNMQNIPARDE--------------------------GKIIRKAFVPSHEGW 651 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGK 433 ++ +D + IE RVL+ ++G++ +AF+ G D++ T + F ++ P QVT D R K Sbjct: 652 QIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAK 711 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 G++ + + Sbjct: 712 ATNF--------------GIVYGISDYGLSQNI--------------------------- 730 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + + ++ +V + ++ E+G Sbjct: 731 ---GISRKQAKAFIDGYFDQYPKVHDYM---DAMVKKAREDGYVETL------------- 771 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 R + + + R +Q + DI+ Sbjct: 772 ----------FHRRRYLPQIHSRNF---NLRKFAERTAMNTP------IQGSAADIIKVA 812 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 M+ KA ++L VHDE++ E P+ + S L +M S +PLK E Sbjct: 813 MIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVE 870 Query: 667 GYESKRY 673 + + Sbjct: 871 SHYGPTW 877 >gi|327382740|gb|AEA54216.1| DNA polymerase I [Lactobacillus casei LC2W] gi|327385927|gb|AEA57401.1| DNA polymerase I [Lactobacillus casei BD-II] Length = 881 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 90/667 (13%), Positives = 193/667 (28%), Gaps = 154/667 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL--------KACF 84 F + +K LE+ + + TV Sbjct: 339 IGFFIGTKEETYVSTDITLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + +P L+ + +G+ + + +L Sbjct: 390 GVKLPDIA-FDVLLASYLINPDENSNDLGKI-----AEDHDYHDLPRDEDIYGKGA---K 440 Query: 145 RNKPNHREAWRLFGEYC----KGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYC 198 R P + + F +T ++ K+ + + E+ + + +G Sbjct: 441 RQVPEDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGIT 500 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256 ++ + L++++ + + ++L LF + L + T+ Sbjct: 501 LNAKTLKAMGTEFSQSIKILEEKIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTG 559 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL+ K +P + + R ++ + L++A D ++ ++ Sbjct: 560 YSTSVDVLNELKSASPIVQDILDYR-GWAKLNSTYVVGLLKAQLPDHKIHTRYLQ-TLTQ 617 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374 TGR S QN+P +R + S EG Sbjct: 618 TGRLSSVDPNMQNIPARDE--------------------------GKIIRKAFVPSHEGW 651 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGK 433 ++ +D + IE RVL+ ++G++ +AF+ G D++ T + F ++ P QVT D R K Sbjct: 652 QIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAK 711 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 G++ + + Sbjct: 712 ATNF--------------GIVYGISDYGLSQNI--------------------------- 730 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + + ++ +V + ++ E+G Sbjct: 731 ---GISRKQAKAFIDGYFDQYPKVHDYM---DAMVKKAREDGYVETL------------- 771 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 R + + + R +Q + DI+ Sbjct: 772 ----------FHRRRYLPQIHSRNF---NLRKFAERTAMNTP------IQGSAADIIKVA 812 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 M+ KA ++L VHDE++ E P+ + S L +M S +PLK E Sbjct: 813 MIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVE 870 Query: 667 GYESKRY 673 + + Sbjct: 871 SHYGPTW 877 >gi|325570069|ref|ZP_08145994.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC 12755] gi|325156897|gb|EGC69068.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC 12755] Length = 881 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 86/658 (13%), Positives = 186/658 (28%), Gaps = 134/658 (20%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 + + + + L++ +++ L P Sbjct: 337 VGVAWGNQEKIYVSNREELFESPAFTDWLKDEKRKKFVYDAKRTYVALNRYT--TAPKGI 394 Query: 93 WICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 L+ A V + + +E + L + Sbjct: 395 AFDVLLAAYLLDTNDTNNDIAGVAAHYGYDAIQSDE------AIYGKGAKKGLPADEEDF 448 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTL 207 R +T E+ + + E L + + G VD + H + Sbjct: 449 FAHLARKVAAITNLTPKLTEELAAKNQTALFEEMELPLSMILAEMEITGIKVDASRLHQM 508 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 ++++++ + + ++L LF + GL + T+ +T VL Sbjct: 509 KGEFAQRLHEIEEKIYAEAG-ETFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 567 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ P + R ++ + L++ + DG++ ++TGR S Sbjct: 568 QLKEQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQGDGKVHTRYVQ-TLTQTGRLSSVDP 625 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAG 383 QN+P + +R + E + +D + Sbjct: 626 NLQNIPIRLEEGRK-------------------------IREAFVPRETDWVIYSSDYSQ 660 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQ 442 IE RVLA ++ + +AF G+D++ +T R F + VT + R K + Sbjct: 661 IELRVLAHISDDTHLKEAFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNF----- 715 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 G++ + A Sbjct: 716 ---------GIVYGISDYGLSQ------------------------------NLGITRKA 736 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 ++ + +K+ V ++ + + + Sbjct: 737 AQQYIDTYFEKYPGVKTYMEDVVREAKD--------------------------KGYVET 770 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----- 617 R D+ + + T R +Q + DIL M++ Sbjct: 771 LYHRRRYLPDINSRNFNIRTF---AERTAINTP------IQGSAADILKIAMIDLAKRLK 821 Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 K ++L VHDE+V E P+++ +++ +M A +PL + K + Sbjct: 822 EEKLAATMLLQVHDELVFEVPESELPRLDALVKEVMEQAV--ALHVPLLTDSNWGKTW 877 >gi|56421265|ref|YP_148583.1| DNA polymerase I [Geobacillus kaustophilus HTA426] gi|56381107|dbj|BAD77015.1| DNA-directed DNA polymerase I [Geobacillus kaustophilus HTA426] Length = 878 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 88/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82 D ++ A + + + L + S F+ V Sbjct: 330 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 383 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ + L+ A + V A KM++ + + Sbjct: 384 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 435 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196 R P+ + R E+ + + EQ L + + G Sbjct: 436 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 494 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + + + + ++Q + L + ++L LF + L + T+ Sbjct: 495 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 553 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + + R + + L++ + D + T+ Sbjct: 554 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 612 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372 ++TGR S QN+P + +R + SE Sbjct: 613 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 647 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 648 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 707 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ A Sbjct: 708 KAVNF--------------GIVYGISDYGLAQ---------------------------- 725 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + V ++ + G Sbjct: 726 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 770 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R D+ + R +Q + DI+ + Sbjct: 771 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 808 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ + ++L VHDE++ E P + L +M + +PLK Sbjct: 809 AMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 866 Query: 666 EGYESKRY 673 + + + Sbjct: 867 DYHYGSTW 874 >gi|325957304|ref|YP_004292716.1| DNA polymerase I [Lactobacillus acidophilus 30SC] gi|325333869|gb|ADZ07777.1| DNA polymerase I [Lactobacillus acidophilus 30SC] Length = 887 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 99/676 (14%), Positives = 208/676 (30%), Gaps = 140/676 (20%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73 L G + D + F+ +D D + + +K LE+ + N Sbjct: 330 LEMLGANYHLADF--VGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV 380 Query: 74 YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 F+ V + + L+ + + +GE L K + Sbjct: 381 -FDLKRTMVAAHRLGIHTHGLDY-DMLLASYLINNENNSNDLGEIAHL--YGDYSVKTDL 436 Query: 131 ARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189 + KG++ D ++ + A + E K ++ + ++ + E + Sbjct: 437 EVYGKGKSEHIPDDDDELFNHLASKVNAIEKLKPELLKKLKEHEQDALFDTIEIPTARVL 496 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G V+ + L V+ +L+ ++ + ++L LF + GL Sbjct: 497 ARMEMNGMKVEASTLIQLQNEFTVKLKELEDKIYGQAG-EKFNLNSPKQLGHILFEKLGL 555 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T+ +T VL K +P ++ + R ++ + L++ + DGR+ Sbjct: 556 PVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHT 614 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 + TGR S QN+P + + +R Sbjct: 615 RYLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRK 648 Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424 + + D + +E RVLA ++G+Q +AF+TG D++ T + F++ P QV Sbjct: 649 AFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQV 708 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T R K + G++ + Sbjct: 709 TPLMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 734 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + +++ ++ + +A ++ + G A Sbjct: 735 ----------NLGISRKRAQEFIDNYFEQYPQIKDYM---DKAVQEARDKGYAETIMH-- 779 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 R D+ + T R +Q Sbjct: 780 ---------------------RRRYLPDIHAKK---YTVRAFAERTAINSP------IQG 809 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657 + DI+ M+N K +V+ VHDE++ + P + + +M S Sbjct: 810 SAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK- 868 Query: 658 AKGLPLKAEGYESKRY 673 +PL A+ + Sbjct: 869 -LDVPLIADSGWGHNW 883 >gi|227551619|ref|ZP_03981668.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257887242|ref|ZP_05666895.1| DNA polymerase A [Enterococcus faecium 1,141,733] gi|257895778|ref|ZP_05675431.1| DNA polymerase A [Enterococcus faecium Com12] gi|293377607|ref|ZP_06623796.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1] gi|227179296|gb|EEI60268.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257823296|gb|EEV50228.1| DNA polymerase A [Enterococcus faecium 1,141,733] gi|257832343|gb|EEV58764.1| DNA polymerase A [Enterococcus faecium Com12] gi|292643607|gb|EFF61728.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1] Length = 881 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 85/665 (12%), Positives = 185/665 (27%), Gaps = 142/665 (21%) Query: 29 CVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 ++ + D Q + + + +++ L Sbjct: 335 EIVGV--AWGTEKKIYVTNDLSVFEN--QAFHSWITDPNRLKKVYDAKRTYVALNRYTG- 389 Query: 87 DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 L+ A ++ + + + +E + L Sbjct: 390 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------TVYGKGAKKGL 441 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200 + + R +++E+ + + ++ EL + + G VD Sbjct: 442 PEEEELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISGIKVD 501 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + +++Q++ + ++L LF + GL + T+ + Sbjct: 502 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 560 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL ++ P + R ++ + L++ + SDG++ ++TG Sbjct: 561 TAVDVLEQLREQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQSDGKVHTRYVQ-TLTQTG 618 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376 R S QN+P + +R + E + Sbjct: 619 RLSSVDPNLQNIPIRLDEGRK-------------------------IRQAFVPREKDWLI 653 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVM 435 +D + IE RVLA ++ ++ AF G+D++ +T R F + VT + R K + Sbjct: 654 YSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAV 713 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ + Sbjct: 714 N--------------FGIVYGISDYGLSQ------------------------------N 729 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 A ++ + +K+ V E + + + Sbjct: 730 LGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKD------------------------- 764 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + R D+ + R +Q + DIL M+ Sbjct: 765 -QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINTP------IQGSAADILKIAMI 814 Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 K ++L VHDE+V E P+ + + L +M S +PL + Sbjct: 815 ELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSS 872 Query: 669 ESKRY 673 K + Sbjct: 873 WGKTW 877 >gi|46198998|ref|YP_004665.1| DNA polymerase I [Thermus thermophilus HB27] gi|46196622|gb|AAS81038.1| DNA polymerase I [Thermus thermophilus HB27] Length = 834 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 96/610 (15%), Positives = 182/610 (29%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + VL LD+ ++LA + + V + + L++ Sbjct: 357 DLAVLALREGLDLAPG--DDPMLLAYLLDPSNTTPEGVARRYGGEWTEDAAHRALLSERL 414 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 RN E ++ +E S + + Sbjct: 415 H---------RNLLKRLEGEEKL-----------LWLYHEVEKPLS------RVLAHMEA 448 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-LED 253 G +DVA L+ + E +L++E+ L + ++L+ LF E L L Sbjct: 449 TGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHP-FNLNSRDQLERVLFDELRLPALGK 507 Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 + +T VL + ++ P ++ +R ++ ++ L ++ GRL Sbjct: 508 TQKTGKRSTSAAVLEALREAHPIVEKILQHR-ELTKLKNTYVDPLPSLVHPRTGRLHTRF 566 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 567 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 600 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 +A G LV D + IE RVLA ++G++ ++ F+ G+D++ T + F V P V Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 661 RRAAKTVNF--------------GVLYGMS------------------------------ 676 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + Q +V + + E+ + G Sbjct: 677 AHRLSQELAIPYEEAVAFIERYFQSFPKVRAW---IEKTLEEGRKRGYVETL-------- 725 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 726 ---------------FGRRRYVPDLNAR---VKSVREAAERMAFNMP------VQGTAAD 761 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE++ E P + L M A +PL Sbjct: 762 LMKLAMVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA--VPL 819 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 820 EVEVGIGEDW 829 >gi|258515627|ref|YP_003191849.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771] gi|257779332|gb|ACV63226.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771] Length = 888 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 80/660 (12%), Positives = 179/660 (27%), Gaps = 146/660 (22%) Query: 30 VILFAFGFDDHPVELWDC----VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 +I A + L ++L+ ++ + +++ + L + Sbjct: 353 LISVALCLSEGQNYLLPLNSSTETTSFALKLLQNICVDSKIKKCCYDTKADL-WLLHYYG 411 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYD 144 ++I ++ + +++ E AL ++EG E Sbjct: 412 IEINQPG-FDVMLADYLLNPGKSARSLPETALSHLDIVLQEGSET--YLPASAEVISRLV 468 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 + Y + + + ++ G VD Sbjct: 469 DILQSKLLLQEQENLY----YDIELPL--------------LKVLASMERTGVSVDKEQL 510 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 +++ ++ + L ++ + + ++L + LF + L T+ +T Sbjct: 511 QLMSEELNKKLQVLTTDIYEHAG-EIFNINSTKQLGSILFEKLKLKAGKKTKTGYSTDVT 569 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL P + R ++ ++ L +N T + TGR S Sbjct: 570 VLEELAGDHPVVSLLLEYRQ-LAKLKSTYVDGLTGLINPQTGKLHTTFHQAVTATGRLSS 628 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + + +R + + AD Sbjct: 629 SEPNLQNVPIRLDAGRK-------------------------IRKFFVPCKPDNFIFSAD 663 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA +A + + AF +D++ T + F VA +VT + R K + + Sbjct: 664 YSQIELRILAHIAQDNNLMDAFAKKQDIHTRTASEVFGVAMDEVTPEMRGRAKAVNFGIV 723 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + + N+ + + + + E Sbjct: 724 YGIS-----DFGLAKDIKVTRKEAGRYINNYFNRYSGVKAYIDRVIREAREKGYVTTI-- 776 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P ++ Sbjct: 777 ---------------------------------------LNRRRYLPDLFSSNRVVRSF- 796 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-- 618 R+ +NT +Q + DI+ M+ Sbjct: 797 --------------GERTAMNTP------------------IQGSASDIIKLAMVLIYRE 824 Query: 619 ----KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 K ++L VHDE++ + ++ L M + +PL + + Sbjct: 825 MRKRKLSSTMILQVHDELIFDVVASEVEEMQNLVKYYMENAVE--LSVPLVVDMKIGPNW 882 >gi|227530466|ref|ZP_03960515.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] gi|227349571|gb|EEJ39862.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] Length = 886 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 93/658 (14%), Positives = 196/658 (29%), Gaps = 135/658 (20%) Query: 34 AFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 F + L DP + + ++ L N+ + N+ + L + + Sbjct: 341 GFALGNDEQWLV--SRDPELLKAPEVQNWLTNSKIKKDVFNAKAQIVGLNR-LGISLDGI 397 Query: 92 RWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 L+ + L + + +E + KG D Sbjct: 398 D-FDLLLASYLLNTNDNSNDLGKLAHEHGYDDVQTDE-----EVYGKGAKRTIPDDDQLF 451 Query: 149 N-HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 H E + + E ++L + E L ++ + G VD + Sbjct: 452 FQHLANKARAIEQLRPQLFEQLEKNEQLPLYTDIELPLTHVLAKMEITGVHVDAQTLKNM 511 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 + T++++++ + ++L LF + L + T+ +T VL Sbjct: 512 GSKLTERLTEIEEQIYQEAG-EEFNINSTKQLGKILFEKLKLPVIKKTKTGYSTAVDVLE 570 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 P + R S+ + L++ ++S + T ++TGR S Sbjct: 571 KLAPQAPIVENILQYRQ-ISKLQSTYIKGLLKVIHSSDQKIHTRYLQTLTQTGRLSSVDP 629 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAG 383 QN+P +R + S EG ++ +D + Sbjct: 630 NLQNIPVRLPEGR-------------------------LIRQAFVPSHEGWQIFSSDYSQ 664 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN-VAPAQVTKDQRAIGKVMELALGYQ 442 +E RVLA + G+ + F+ GED++ +T R F+ ++ ++ R K + + Y Sbjct: 665 VELRVLAHITGDHNLQEDFKNGEDIHASTARRIFHLKPDQEIDRNMRRRAKAVNFGIVYG 724 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 ++++ + +E+ +++ E ++ + Sbjct: 725 IS-----DYGLAQRIHVSRSQAHEFIQNYFKEFPKVKDYIHDTIEFARQNGYVETIT--- 776 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 +RR +P + K Sbjct: 777 --------------------------------------HRRRYLPDINSKSFSRRSF--- 795 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 R+ +NT +Q + DI+ M+ Sbjct: 796 ------------AERTAMNT------------------PIQGSAADIIKIAMIKMQDELE 825 Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L +HDE+V E P + S L +M S +PLK + + Sbjct: 826 KRQLKAKMLLQIHDELVFEAPKEEIPVLSKLVPDVMDSAVK--LSVPLKVDSKYGDTW 881 >gi|315658046|ref|ZP_07910919.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590] gi|315496936|gb|EFU85258.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590] Length = 877 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 93/633 (14%), Positives = 182/633 (28%), Gaps = 132/633 (20%) Query: 56 VLKEALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 L E LEN + ++ + V +++ ++ + ++ V Sbjct: 358 ELIEWLENDHNNKIVFDAKKTY---VAAHRLEINLQHID-FDVMLASYIINPSRTIEDVQ 413 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG--DVTVTREI 171 + +Q K IA + KG+ + D H A Y + Sbjct: 414 SVVSYYNQ--NFVKSDIAVYGKGKKRQVPLDDVLEVHIAAIMQAI-YNCKPLMSDI-LSD 469 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 +++ L++ E L + + + G DV + + + L E+ Sbjct: 470 HNQMDLLNNLELPLARILADMEETGIYTDVNDLKEMQNELQEKLDNLVSEIYEAAG-ESF 528 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L LF L + T+ +T VL + P + R S+ Sbjct: 529 NINSPKQLGIVLFETLKLPIIKKTKTGYSTAVDVLEQLQGKHPIIDYILEYRQ-LSKLQS 587 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + L + ++ D R+ A +TGR S QN+P + Sbjct: 588 TYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSIDPNLQNIPIRLEEGRK---------- 636 Query: 349 SITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R S+ ++ AD + IE RVLA M ++ +AF G+D Sbjct: 637 ---------------IRKAFKPTSDDYVILSADYSQIELRVLAHMTQDESLKEAFIHGDD 681 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T + F V QV R K + G++ + Sbjct: 682 IHAATAMKVFGVEKDQVNDLMRRQAKAVNF--------------GIVYGISDYGLSQ--- 724 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + V + ++ Sbjct: 725 ---------------------------NLGITRKKAKAFIDDYLASFPGVKQYMTDI--- 754 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + NG R D+ + Sbjct: 755 VKDAKANGYVETLLH-----------------------RRRYIPDITSRNF---NLRSFA 788 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDE 641 R +Q + DI+ M+ K ++L VHDE++ E P ++ Sbjct: 789 ERTAMNTP------IQGSAADIIKLAMVQFDKNVRETNYHAKLLLQVHDELIFEVPKSEV 842 Query: 642 FNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + S + +M + + A +PL + + Sbjct: 843 QDFSEFVEEIMDNALTLA--VPLLVDSSYGATW 873 >gi|42519528|ref|NP_965458.1| DNA polymerase I [Lactobacillus johnsonii NCC 533] gi|41583817|gb|AAS09424.1| DNA polymerase I [Lactobacillus johnsonii NCC 533] Length = 886 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 101/665 (15%), Positives = 206/665 (30%), Gaps = 145/665 (21%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL- 86 + F+ + DPV+ Q L++ LE+ + N F+ + L Sbjct: 342 IEGFSLKVGNK----IYVSKDPVLLQENSLRQMLEDKTIKK---NV-FDIK--RTYVGLH 391 Query: 87 --DIPIHRWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 DI L+ + + +GE L K + + KG+ Sbjct: 392 RLDIKAEGLDYDMLLASYLVNNENNSNDLGEIAHLYDD--YSVKTDLEVYGKGKKQAVPD 449 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDV 201 D + H A E K + ++ + + E+ + + G V+ Sbjct: 450 DNDFFEHLAAKVAVIE--KLKTPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEA 507 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 ++ + L V+ +L+ ++ + ++L LF + GL T+ +T Sbjct: 508 SVLNQLGNDFAVKLQELEHKIYQQAG-EEFNLNSPKQLGHILFEKLGLPPIKKTKTGYST 566 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL K +P ++ + R ++ + L++ + DGR+ + TGR Sbjct: 567 SVEVLEQLKMKSPIVSEILDYRQ-IAKIQNTYVKGLLDCIQPDGRIHTRYLQ-TLTTTGR 624 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA--SEGKKL 376 S QN+P + + +R + +G Sbjct: 625 LSSVDPNLQNIPTKTEEGK-------------------------QIRKAFVPSTKDGYIF 659 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVM 435 D + +E RVLA ++G++ +AF++G D++ T + F++ P +VT R K + Sbjct: 660 -SCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAV 718 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ + Sbjct: 719 NF--------------GIVYGISDYGLSK------------------------------N 734 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + + + +++ ++ +A ++ ENG A Sbjct: 735 LGISRKQAKTFIENYFEQYPQIKNYM---DEAIKKARENGYAETIMH------------- 778 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 R D+ + R +Q + DI+ M+ Sbjct: 779 ----------RRRYLPDIHSKNF---NVRSFAERTAINSP------IQGSAADIIKIAMI 819 Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 N K +VL VHDE++ + P + + +M S +PL A+ Sbjct: 820 NMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIADSN 877 Query: 669 ESKRY 673 + Sbjct: 878 WGHNW 882 >gi|239632072|ref|ZP_04675103.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526537|gb|EEQ65538.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 881 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 90/667 (13%), Positives = 193/667 (28%), Gaps = 154/667 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL--------KACF 84 F + +K LE+ + + TV Sbjct: 339 IGFFIGTKEETYVSTDVTLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + +P L+ + +G+ + + +L Sbjct: 390 GVKLPDIA-FDVLLASYLINPDENSNDLGKI-----AEDHDYHDLPRDEDIYGKGA---K 440 Query: 145 RNKPNHREAWRLFGEYC----KGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYC 198 R P + + F +T ++ K+ + + E+ + + +G Sbjct: 441 RQVPEDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGIT 500 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256 ++ + L++++ + + ++L LF + L + T+ Sbjct: 501 LNAKTLKAMGTEFSQSIKILEEKIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTG 559 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL+ K +P + + R ++ + L++A D ++ ++ Sbjct: 560 YSTSVDVLNELKSASPIVQDILDYR-GWAKLNSTYVVGLLKAQLPDHKIHTRYLQ-TLTQ 617 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374 TGR S QN+P +R + S EG Sbjct: 618 TGRLSSVDPNMQNIPARDE--------------------------GKIIRKAFVPSHEGW 651 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGK 433 ++ +D + IE RVL+ ++G++ +AF+ G D++ T + F ++ P QVT D R K Sbjct: 652 QIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAK 711 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 G++ + + Sbjct: 712 ATNF--------------GIVYGISDYGLSQNI--------------------------- 730 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + + ++ +V + ++ E+G Sbjct: 731 ---GISRKQAKAFIDGYFDQYPKVHDYM---DAMVKKAREDGYVETL------------- 771 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 R + + + R +Q + DI+ Sbjct: 772 ----------FHRRRYLPQIHSRNF---NLRKFAERTAMNTP------IQGSAADIIKVA 812 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 M+ KA ++L VHDE++ E P+ + S L +M S +PLK E Sbjct: 813 MIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVE 870 Query: 667 GYESKRY 673 + + Sbjct: 871 SHYGPTW 877 >gi|323490453|ref|ZP_08095660.1| DNA polymerase I [Planococcus donghaensis MPA1U2] gi|323395857|gb|EGA88696.1| DNA polymerase I [Planococcus donghaensis MPA1U2] Length = 878 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 86/691 (12%), Positives = 191/691 (27%), Gaps = 151/691 (21%) Query: 10 TRSPIDLTKCGICKYAE-------DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 T + K + + E ++ + + + + + + Sbjct: 308 TTLDPSILKDEMAVHLELYDEHYHSCDLLGVSLATE-RDTYVIPMDVVER-SEEFRAWCK 365 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG---EALKLS 119 ++ +S F +++ ++ A + + + Sbjct: 366 DSTKKKFMSDSKAATAAFLR-FGVELRGVD-FDLMLGAYIVNPSLTYTDMASIVQEYGHN 423 Query: 120 SQKMEEG------KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 E K+ + H R R E + +++ Sbjct: 424 DVSTNEQIYGKGAKKKVPEDAILHEHIARKARTIWKVRPLIMAKLEDNEQ-----FDLYD 478 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 +LE L + + G V+ + + + + K++ ++ L + Sbjct: 479 KLE------LPLATVLGQMESLGVMVNRDQLVEMGKELAHKLEKIESDIHGLAGQ-EFNI 531 Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF + GL T+ +T VL + + R + Sbjct: 532 NSPKQLGVILFEKLGLPALKKTKTGYSTAADVLEKLEGQHEIISHILMYRQ-LGKLLSTY 590 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L++ ++ DG++ Q + TGR S QN+P + Sbjct: 591 IEGLLKEIHEDGKIHTRFQQALTT-TGRLSSINPNLQNIPVRLEEGRK------------ 637 Query: 351 TSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R + G +V AD + IE RVLA M+ ++ ++AF+ D++ Sbjct: 638 -------------IRKAFVPSEPGWVMVAADYSQIELRVLADMSEDERLVQAFKDDRDIH 684 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 TT + F+V +VT D R K + G++ + Sbjct: 685 TTTASDVFHVTEEEVTSDMRRAAKAVNF--------------GIVYGISDYGLSQ----- 725 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + V + + Sbjct: 726 -------------------------NLNIPRKEAAAFIERYFASFPGVKSYMTNIVADAK 760 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + + + R D+ ++ R Sbjct: 761 R--------------------------DGFVTTLMNRRRYLPDITSSNF---NLRSFAER 791 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN 643 +Q + DI+ + M++ A ++L VHDE++ E P + + Sbjct: 792 TAMNTP------IQGSAADIIKKAMIDMDAAIEREGLQARMLLQVHDELIFEAPPEELDH 845 Query: 644 ASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 L +M + +PLK + + Sbjct: 846 LMKLVPEVMENAVK--LSVPLKVDIAHGSTW 874 >gi|257884459|ref|ZP_05664112.1| DNA polymerase A [Enterococcus faecium 1,231,501] gi|257820297|gb|EEV47445.1| DNA polymerase A [Enterococcus faecium 1,231,501] Length = 881 Score = 308 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 85/665 (12%), Positives = 184/665 (27%), Gaps = 142/665 (21%) Query: 29 CVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 ++ + D Q + + +++ L Sbjct: 335 EIVGV--AWGTEKKIYVTNDLSVFEN--QAFHSWITDPTRLKKVYDAKRTYVALNRYTG- 389 Query: 87 DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 L+ A ++ + + + +E + L Sbjct: 390 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------TVYGKGAKKGL 441 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200 + + R +++E+ + + ++ EL + + G VD Sbjct: 442 PEEEELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISGIKVD 501 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + +++Q++ + ++L LF + GL + T+ + Sbjct: 502 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 560 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL ++ P + R ++ + L++ + SDG++ ++TG Sbjct: 561 TAVDVLEQLREQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQSDGKVHTRYVQ-TLTQTG 618 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376 R S QN+P + +R + E + Sbjct: 619 RLSSVDPNLQNIPIRLDEGRK-------------------------IRQAFVPREKDWLI 653 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVM 435 +D + IE RVLA ++ ++ AF G+D++ +T R F + VT + R K + Sbjct: 654 YSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAV 713 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ + Sbjct: 714 N--------------FGIVYGISDYGLSQ------------------------------N 729 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 A ++ + +K+ V E + + + Sbjct: 730 LGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKD------------------------- 764 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + R D+ + R +Q + DIL M+ Sbjct: 765 -QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINTP------IQGSAADILKIAMI 814 Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 K ++L VHDE+V E P+ + + L +M S +PL + Sbjct: 815 ELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSS 872 Query: 669 ESKRY 673 K + Sbjct: 873 WGKTW 877 >gi|255524969|ref|ZP_05391916.1| DNA polymerase I [Clostridium carboxidivorans P7] gi|255511341|gb|EET87634.1| DNA polymerase I [Clostridium carboxidivorans P7] Length = 880 Score = 308 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 98/642 (15%), Positives = 188/642 (29%), Gaps = 145/642 (22%) Query: 45 WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 ++ + LK+ EN + V+HN TV K ++ + T + A Sbjct: 367 IYEENNEDTLKCLKDIFENDKIEKVSHNIKVPYTVFKK-MGINFTSVK-FDTEIAAYLID 424 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 L+S I + K + + +F K Sbjct: 425 SSRG------EYGLNSI--------IQDYLKIMLQGEEDEIRVKENSLLKDVFETLNKQI 470 Query: 165 VTVTRE--IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + E ++ EQ L + + G+ VD L + +E KL +++ Sbjct: 471 KELNMEELLY-------EVEQPLTLVLAAMEYEGFKVDNVKLEELGEKFKIEIDKLKKDI 523 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279 L + ++L LF + L + T+ +T VL P ++ Sbjct: 524 YGL-AEEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEQLLDKHPIIEKITYY 582 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ + L ++ DG++ + + TGR S QN+P E Sbjct: 583 RQ-FTKLYSTYIEGLKAVIDKDGKIHSSFNQTVTT-TGRLSSTEPNLQNIPIKYEMGRE- 639 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398 +R + E ++ AD + IE RVLA +A ++ Sbjct: 640 ------------------------IRKVFVPEDENSIILSADYSQIELRVLAHIADDENL 675 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF D++ T + F V QVTK QR+ K + + G+ Sbjct: 676 IDAFLNHSDIHTKTASEVFKVPIDQVTKLQRSNAKAVNFGIV--------------YGIG 721 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + A + + + +++ V Sbjct: 722 DFSL------------------------------AKDLKISRKEAKNYIDTYFERYPGVK 751 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + E NL + R ++ N++ Sbjct: 752 RYMDNVIKQAED--------------------------NLYVTTIMNRRRFIPEIKNSKK 785 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEI 632 + R +Q + DI+ M+N ++L VHDE+ Sbjct: 786 MVK---AFGERLAMNTP------IQGSAADIIKMSMVNVYNILKSKNLKSKVILQVHDEL 836 Query: 633 VCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + + L M +PL+ + + Sbjct: 837 ILNVYKDELEEVKELVKNQMEDVMK--LRVPLEVDINLGDNW 876 >gi|57867172|ref|YP_188827.1| DNA polymerase I [Staphylococcus epidermidis RP62A] gi|251811085|ref|ZP_04825558.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060] gi|282875888|ref|ZP_06284755.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135] gi|57637830|gb|AAW54618.1| DNA polymerase I [Staphylococcus epidermidis RP62A] gi|251805382|gb|EES58039.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060] gi|281294913|gb|EFA87440.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135] Length = 876 Score = 308 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 97/663 (14%), Positives = 201/663 (30%), Gaps = 131/663 (19%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81 Y +D ++ F F + V + D + L + LE+ + T + +++ + V Sbjct: 328 YLKD-TILKFGFYTNHQHVVI--NAEDVKDYKHLVQWLEDKNTTKIVYDAKKTY---VSA 381 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 ++I ++ + ++ V +S K+ I F KG+ H Sbjct: 382 HRLGINIENIE-FDVMLASYIIDPSRSIDDVKSV--VSLYGQNYVKDNITIFGKGKKHHI 438 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 + H + + E + ++E L E L + + + G D+ Sbjct: 439 PEEPILNEHIASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDI 498 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 + + + L + + G + ++L LF L + T+ +T Sbjct: 499 NDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGYST 557 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + P + R ++ + L + ++ D R+ A +TGR Sbjct: 558 AVDVLEKLQGEHPIIDDILEYRQ-LAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGR 615 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLV 377 S QN+P + +R S+ ++ Sbjct: 616 LSSIDPNLQNIPIRLEEGRK-------------------------IRKAFKPTSKDSVIL 650 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA + ++ AF G D++ T + FNV QV R K + Sbjct: 651 SADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF 710 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y + L + + + + + + ++ + Sbjct: 711 GIVYGIS-----DYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVET 765 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 +RR +P + + Sbjct: 766 L-----------------------------------------LHRRRYIPDITSRNVNLR 784 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R+ +NT +Q + DI+ M+ Sbjct: 785 SF---------------AERTAMNT------------------PIQGSAADIIKLAMVKF 811 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670 ++ ++L VHDE++ E P ++ + S + +M +PLK + Sbjct: 812 SEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYG 869 Query: 671 KRY 673 + Sbjct: 870 ATW 872 >gi|153853271|ref|ZP_01994680.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814] gi|149754057|gb|EDM63988.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814] Length = 871 Score = 308 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 90/670 (13%), Positives = 179/670 (26%), Gaps = 159/670 (23%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSYFERTVL 80 +A+ + F + + L + E + + H Sbjct: 337 FADQAGLGGIGLCFSKEESYCIKVEKDITGEWLLKKLADVAEKAETYAMFH-LK------ 389 Query: 81 KACFNLDI-PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG 136 ++ + I V A + V E I + K Sbjct: 390 ESMEQVTIRNQANCFDVSVAAYLLNPLKNNYTWEDVAREHLGLM-----IDEKIDQDMKA 444 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQELWYL--DQTIN 193 + + Y V V R+ + ++ E+ + + Sbjct: 445 C----------------YESYVNYAS--VEVLRQKLRDTKMDTLFRDIEMPLVFTLFDME 486 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G V+ + + +L++E+ + ++L LF L Sbjct: 487 QNGIRVEADALKQYGDQLAGKIAELEKEIYEEAG-ETFNINSPKQLGVVLFENMKLPGGR 545 Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+ +T VL P ++ R ++ + L + DGR+ G Sbjct: 546 KTKTGYSTAADVLEKLAPEHPVVAKILEYRQY-TKLKSTYADGLANYIQDDGRIHGKFNQ 604 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 + TGR S QN+P +R I Sbjct: 605 -TITATGRISSTEPNLQNIPVRMELGR-------------------------LIRKVFIP 638 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 EG + V AD + IE RVLA +G++ ++A++ D++ T ++ F++ +VT QR Sbjct: 639 EEGYRFVDADYSQIELRVLAHCSGDEHLIQAYKEQSDIHRITASQVFHIPFDEVTPQQRR 698 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + Y + L+ Sbjct: 699 NAKAVNFGIVYG-----ISSFGLSQDLS-------------------------------- 721 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + + + + L A E G + Sbjct: 722 -------ITRKEAAKYIDDYFATYPGIKTF---LDHAVTHAKEEGYVVTL---------- 761 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 GR ++ ++ + R +Q + DI+ Sbjct: 762 -------------FGRRRPVPELSSSNFMQRSF---GERVAMNSP------IQGAAADII 799 Query: 611 AEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 M+ K +VL VHDE++ E + + + M +PL Sbjct: 800 KIAMIRVNQRLKDQKMKSRLVLQVHDELLIEAYEPELDEVQNILKEEMEHAAE--LKVPL 857 Query: 664 KAEGYESKRY 673 + + + + Sbjct: 858 EIDMHTGDNW 867 >gi|289550552|ref|YP_003471456.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01] gi|289180084|gb|ADC87329.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01] Length = 877 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 93/633 (14%), Positives = 182/633 (28%), Gaps = 132/633 (20%) Query: 56 VLKEALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 L E LEN + ++ + V +++ ++ + ++ V Sbjct: 358 ELIEWLENDHNNKIVFDAKKTY---VAAHRLEINLQHID-FDVMLASYIIDPSRTIEDVQ 413 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG--DVTVTREI 171 + +Q K IA + KG+ + D H A Y + Sbjct: 414 SVVSYYNQ--NFVKSDIAVYGKGKKRQVPLDDVLEVHIAAIMQAI-YNCKPLMSDI-LSD 469 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 +++ L++ E L + + + G DV + + + L E+ Sbjct: 470 HNQMDLLNNLELPLARILADMEETGIYTDVNDLKEMQNELQEKLDNLVSEIYEAAG-ESF 528 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L LF L + T+ +T VL + P + R S+ Sbjct: 529 NINSPKQLGIVLFETLKLPIIKKTKTGYSTAVDVLEQLQGKHPIIDYILEYRQ-LSKLQS 587 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + L + ++ D R+ A +TGR S QN+P + Sbjct: 588 TYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSIDPNLQNIPIRLEEGRK---------- 636 Query: 349 SITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R S+ ++ AD + IE RVLA M ++ +AF G+D Sbjct: 637 ---------------IRKAFKPTSDDYVILSADYSQIELRVLAHMTQDESLKEAFIHGDD 681 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T + F V QV R K + G++ + Sbjct: 682 IHAATAMKVFGVEKDQVNDLMRRQAKAVNF--------------GIVYGISDYGLSQ--- 724 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + V + ++ Sbjct: 725 ---------------------------NLGITRKKAKAFIDDYLASFPGVKQYMTDI--- 754 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + NG R D+ + Sbjct: 755 VKDAKANGYVETLLH-----------------------RRRYIPDITSRNF---NLRSFA 788 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDE 641 R +Q + DI+ M+ K ++L VHDE++ E P ++ Sbjct: 789 ERTAMNTP------IQGSAADIIKLAMVQFDKNVRETNYHAKLLLQVHDELIFEVPKSEV 842 Query: 642 FNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + S + +M + + A +PL + + Sbjct: 843 QDFSEFVEEIMDNALTLA--VPLLVDSSYGATW 873 >gi|331082028|ref|ZP_08331156.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405623|gb|EGG85153.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium 6_1_63FAA] Length = 880 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 86/679 (12%), Positives = 187/679 (27%), Gaps = 148/679 (21%) Query: 19 CGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH------- 71 GI E ++ + + E++ + + + + L Sbjct: 322 VGIELLEEKGQILGLGLAWGEEKTEVYSILPQGFVTE---DYLIEKTQEFCQQGKLIASL 378 Query: 72 NSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALK---LSSQKMEE 125 N + +L + + A + + +++ Sbjct: 379 NIK----AMLRYMDLK-SHNDMFDAGLAAYLLNPLKSEYTYDDIAKEFLGEMFPAKEDLL 433 Query: 126 GK-ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 GK I + E R +E++ E Sbjct: 434 GKLSYIKAANEKEEELAKSVCYMAYTALKSRTSLLEALE-KENMKELYT------DMEMP 486 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G V+ + + V L++E+ + ++L LF Sbjct: 487 LLFTLADMEKEGILVEAEALKEYGEKLQVRIEALEKEIWEQAG-EEFNINSPKQLGVILF 545 Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + L T+ +T VL + R ++ + L + D Sbjct: 546 EKLELPGGKKTKTGYSTAADVLEKLAPEHKLVADILEYRQ-LTKLKSTYADGLANYIAED 604 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 GR+ T + TGR S QN+P + Sbjct: 605 GRIHSTFNQ-TITATGRISSTEPNLQNIPVRTELGR------------------------ 639 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R I +G + AD + IE RVLA M+G++ ++A++ +D++ T ++ F++ Sbjct: 640 -LLRKVFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITASQVFHIPF 698 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 +VT QR K + + Y + L+ Sbjct: 699 DEVTPLQRRNAKAVNFGIVYG-----ISSFGLSQDLS----------------------- 730 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + +++ Q + ++ + L + ++ Sbjct: 731 ----------------ISRKEAAQYIESYFQTYPKIKGFLDGLVEEAKE----------- 763 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 + R ++ ++ + R Sbjct: 764 ---------------KGYVSTLFHRRRPVPELKSSNFMQRS---FGERVAMNSP------ 799 Query: 602 VQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN 654 +Q + DI+ M+ K +VL VHDE++ ET + S + M Sbjct: 800 IQGTAADIIKIAMIRVNKRLKEENLKSRLVLQVHDELLIETAKEEVEQVSAILEQEMKEA 859 Query: 655 PSWAKGLPLKAEGYESKRY 673 + L+ + + + + Sbjct: 860 AH--LSVALEIDMHTGENW 876 >gi|189485016|ref|YP_001955957.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170286975|dbj|BAG13496.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 908 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 81/676 (11%), Positives = 193/676 (28%), Gaps = 153/676 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHD---------PVMPQVLKEALENTDVTIVAHNSYFERTV 79 ++ + ++ + H+ + + + + H+ ER + Sbjct: 351 RIVGISLCVEN-KAFYFPIGHNDLTARQVIFEDFKDIFAPLFFSDKIKKIGHDLKQERNI 409 Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 + + + + ++ + + + KE + ++ Sbjct: 410 YS-MSGVGLN-NIYFDIMLASYCLNPAKSH-----------CITDMSKEYLDFTAGVGSY 456 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLD 189 + + +Y I+K + E L + Sbjct: 457 AWKGSKKSSFANSSIEAGAKYANSISAAVFAIYKIFDFQIKEKKLSLLFFDTEMSLVEIL 516 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G VD+ N+ + E ++ + + + ++L + +F + L Sbjct: 517 SEMEISGIKVDLPFLRNFNEKIVYELKIIENNIYKIAGI-EFNINSQKQLSSVMFEKLNL 575 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T+ +T + VL ++ R + ++ L + G Sbjct: 576 PVIKKTKTGYSTDEEVLVELSS-HEFPAEILKYR-ELQKLKSTYIDPLTDYCVYYGSRIH 633 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 T+ + TGR S QN+P S +E R Sbjct: 634 TIFNQAVTTTGRLSSTEPNLQNIPVKSAYGKEF-------------------------RK 668 Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 + K + AD + I+ RVLA ++ + ++AF+ G D++ T FN+ Sbjct: 669 AFVPERNKIFISADYSQIDLRVLAHISQDTKFIEAFKAGTDIHSATAREIFNIPEGYPLT 728 Query: 427 D-QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 D R+ K + + Y + LN+ Sbjct: 729 DSLRSAAKSINFGIIYGMSP-----FGLSKQLNIP------------------------- 758 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + +++ +V ++ + Sbjct: 759 --------------FGKAKEYIDGYFERYDKVKFWMEQIVKQA----------------- 787 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 + + +GR ++ + + + R VQ Sbjct: 788 ---------SEDGYVRTITGRIRYIPELRSTNA---QVRKAGERMA------LNTPVQGS 829 Query: 606 SRDILAEGMMNATK----AGYD--IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWA 658 S DI+ M++ GY ++L VHD+++ E PD + N S++ + M + Sbjct: 830 SADIIKIAMISVYNEIKLKGYKSLMLLQVHDDLLFEVPDGESENMISIIKNKMENPLH-- 887 Query: 659 KGLPLKAEGYESKRYR 674 +P+ + + + Sbjct: 888 LSIPIVVDIKAGRNWG 903 >gi|124262437|gb|ABM97416.1| DNA polymerase I [Bacillus sp. G(2006)] Length = 876 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 88/668 (13%), Positives = 182/668 (27%), Gaps = 143/668 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82 D ++ A + + + L + S F+ V Sbjct: 328 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 381 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ + L+ A + V A KM++ + + + Sbjct: 382 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRSDEAVYGKGA-- 433 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196 R P+ + R E+ + + EQ L + + G Sbjct: 434 -KRAVPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 492 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + + + + ++Q + L + ++L LF + L + T+ Sbjct: 493 VKVDTKRLEQMGEELAEQLRTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPILKKTK 551 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + + R + + L++ + D + T+ Sbjct: 552 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372 ++TGR S QN+P + +R + SE Sbjct: 611 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 646 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 705 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ A Sbjct: 706 KAVNF--------------GIVYGISDYGLAQ---------------------------- 723 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + V ++ + G Sbjct: 724 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 768 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R D+ + R +Q + DI+ + Sbjct: 769 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 806 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ + ++L VHDE++ E P + L +M + +PLK Sbjct: 807 AMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 864 Query: 666 EGYESKRY 673 + + + Sbjct: 865 DYHYGPTW 872 >gi|86605248|ref|YP_474011.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab] gi|86553790|gb|ABC98748.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab] Length = 928 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 97/695 (13%), Positives = 196/695 (28%), Gaps = 160/695 (23%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKE 59 D ET S D ++ + + V H ++ Q L+ Sbjct: 364 DTETTSLDP----------RDAQLVGIGCCWSERDVAYLPLGHRQGSNLDWDLVKQSLQP 413 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALK 117 E+ + N ++ ++ +A + + + ++ + L + + Sbjct: 414 IWEDPNRPKSLQNCKYDLSIFRAHS-IRLQGIQ-FDPMLASYVLNPEASHNLADLAASY- 470 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L E + EYC D + L Sbjct: 471 -----------LNLPTTSYEKLLGKAE---SLADLPIAKVAEYCGTDAYCAYRLVPILTE 516 Query: 178 LSSK------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 + E L ++ + + G +D +Q ++ E L+Q+ + Sbjct: 517 KLQQTDPRLWNLFVQVELPLAHVLEEMEWVGIRIDTEFLRQFSQELEKELHSLEQKAYAQ 576 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNR 280 V + ++L + LF + L + + +T VL + P + R Sbjct: 577 AG-EVFNLNSPKQLGSLLFEKLKLDVRKTRKTATGYSTDASVLEKLEGDHPVIETILQYR 635 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 ++ ++ L + D GR+ + + TGR S QN+P S Sbjct: 636 -TLAKLKSTYVDALPALVRRDTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRSE----- 688 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 S +R + EG L AD + IE R+LA ++ E + Sbjct: 689 --------------------FSRRIRQAFVPQEGWLLASADYSQIELRILAHLSQEPTLI 728 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 + F +GED++ T F +VT ++R + K + + Y GA+ F + A + Sbjct: 729 ECFRSGEDVHTLTARLLF--EKQEVTSEERRLAKTINYGVIYGMGAQRFARTA-----GV 781 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + E + + R + +H + +G R+ +S+ Sbjct: 782 SLAEAKEFLRRFNERYAGVFAYLRATEAFVEKHGYVETLLGR---------RRYFPNLSQ 832 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 L QA + N + +K L L + RS + V + + Sbjct: 833 LSGHRKQAELRAAVN------APIQGSASDIIKVAMVRLQEKLQNFRSRLLLQVHDELVF 886 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + ++ Sbjct: 887 EVEPSEWQ---------------------------------DLRPLIQ------------ 901 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 M +PL + ++ Sbjct: 902 ---------REMEEAVP--LSIPLVVDIQIGHNWK 925 >gi|210077507|gb|ACJ07018.1| PolI [Thermus sp. Tok23.A1] Length = 833 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 100/610 (16%), Positives = 189/610 (30%), Gaps = 151/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + VL + + L++A + + V + + L++ Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTNPEGVARRYGGEFTEDAAERALLSE-- 412 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 RLF +++ E+ L + + Sbjct: 413 --------------------RLFQNLFPRLSEKLLWLYQ------EVERPLSRVLAHMEA 446 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--- 251 RG +DV L L+ ++ E +L+ E+ L + ++L+ LF E GL Sbjct: 447 RGVRLDVPLLEALSFELEKEMERLEGEIFRLAGHP-FNLNSRDQLERVLFDELGLTPVGR 505 Query: 252 -EDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 E + +T Q L + + P + R S+ L+ L ++ GRL Sbjct: 506 TEKTGKRSTAQGALEALRGAHPIVELILQYR-ELSKLKSTYLDPLPRLVHPRTGRLHTRF 564 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 565 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRKAF 598 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 +A EG L+ AD + IE RVLA ++G++ + F G+D++ T A F + PA V Sbjct: 599 VAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKM 658 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ + + + + Sbjct: 659 RRAAKTVNF--------------GVLYGMSAHRLSQELGID------------------- 685 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 E + + Q +V + + E+ G Sbjct: 686 -----------YKEAEAFIERYFQSFPKVRAW---IERTLEEGRTRGYVETL-------- 723 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + + R VQ + D Sbjct: 724 ---------------FGRRRYVPDLASR---VRSVREAAERMAFNMP------VQGTAAD 759 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPL 663 ++ M+ G ++L VHDE+V E P+ E +++ +M + + +PL Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENA--YPLDVPL 817 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 818 EVEVGVGRDW 827 >gi|194466653|ref|ZP_03072640.1| DNA polymerase I [Lactobacillus reuteri 100-23] gi|194453689|gb|EDX42586.1| DNA polymerase I [Lactobacillus reuteri 100-23] Length = 888 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 92/652 (14%), Positives = 198/652 (30%), Gaps = 132/652 (20%) Query: 39 DHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 + + D + + LK+ L++ V N+ + L + + Sbjct: 347 GNEGHWF-ISRDVDLLKEAPLKDLLQSDSVKKNVFNAKAQIVGLHR-LGIPLENIN-FDL 403 Query: 97 LVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 L+ + L V + + +E + D +H Sbjct: 404 LLASYLLNTNDNSNDLGQVAQEHGYDDVRTDE----EVYGKGAKRTVPDDDETFFSHLAT 459 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 E + D+ + K+ + E L + + G VD + + Sbjct: 460 KARAIEQLRKDLFAKLDENKQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTE 519 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT 270 ++++ ++ + ++L LF + L + T+ +T VL + Sbjct: 520 RLSEIESQIYQEAG-EEFNINSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEKLADKS 578 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 P Q+ R ++ + L++ ++S+ + T ++TGR S QN+P Sbjct: 579 PIVEQILEYRQ-IAKLQSTYIAGLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIP 637 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVL 389 +R + S EG ++ +D + +E RVL Sbjct: 638 VRLPEGR-------------------------LIRKAFVPSHEGWQIFSSDYSQVELRVL 672 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAF 448 A + G++ + F+ GED++ +T R F++AP ++ ++ R K + + Y Sbjct: 673 AHITGDKNLQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAVNFGIVYGIS---- 728 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 ++++ + E+ + + E+ + Sbjct: 729 -DYGLAQRIHVSRAEAHEFIQNYFHEFPGVKKYINDTIAFAKENGYVETIT--------- 778 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 +RR +P ++ K Sbjct: 779 --------------------------------HRRRYLPDIHAKSFSKRSF--------- 797 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GY 622 R+ +NT +Q + DI+ M+ Sbjct: 798 ------AERTAMNT------------------PIQGSAADIIKIAMIRMQDELEKRHLKA 833 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L +HDE+V E P + S L +M S +PLK + + Sbjct: 834 KMLLQIHDELVFEAPKEEIPVLSELVPKVMDSAVK--LDVPLKVDSKYGDTW 883 >gi|118444648|ref|YP_877757.1| DNA polymerase I [Clostridium novyi NT] gi|118135104|gb|ABK62148.1| DNA polymerase I, polA [Clostridium novyi NT] Length = 878 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 88/654 (13%), Positives = 187/654 (28%), Gaps = 155/654 (23%) Query: 40 HPVELWDC-----VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW- 93 V + ++LK EN + V H+S VLK +I Sbjct: 356 EEVFVISANEIKDKDGAKYFEILKNLFENEKIKKVCHDSKKVYVVLKKH---NIAAKNIA 412 Query: 94 ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + A + LK + E + L S K ++ + I + +++ Sbjct: 413 FDTKIAAYLLQPSKSDYMLKDLIEEMLLLSLKDDDNIK-INETYYIKDVYEKLEKDIKKS 471 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 L+ E L + ++ G+ VD + + Sbjct: 472 NMEELLYT----------------------VELPLIEVLASMECEGFRVDENRLTEIGEK 509 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267 E L++E+ L + + ++L LF + L + T+ +T VL K Sbjct: 510 FKKEIETLEKEIHEL-ADEEFNIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLK 568 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 P ++ R ++ + L ++ D ++ + + TGR S Q Sbjct: 569 DSHPIIEKIIEYRQ-ITKLDSTYVEGLKNVIDEDAKIHSSFNQTVTT-TGRLSSTEPNLQ 626 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEA 386 N+P E +R + + + + AD + IE Sbjct: 627 NIPIKHEMGRE-------------------------IRKVFVPNNDESVIFSADYSQIEL 661 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+L+ +A ++ + AF+ +D++ T + F V +VT R+ K + + Sbjct: 662 RILSHIADDEKLIDAFKHHKDIHTITASEVFKVPIDEVTPLMRSNAKAVNFGIV------ 715 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 + + + Sbjct: 716 --------------------------------------YGIGAFSLSKDINVSRKEAKEY 737 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + ++ V + +E+ E + + R Sbjct: 738 IDTYFSRYPNVKKYIDEIISKAE--------------------------VDGFVTTILNR 771 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620 ++ + + R +Q + DI+ M+ Sbjct: 772 KRYIPEIQSRNKIVRG---FGERLAMNTP------IQGSAADIIKLAMVEVYNELKNRNL 822 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ + + M + +PL+A+ + + Sbjct: 823 KSTLILQVHDELILNVYKDELEEVKEMVVDKMENVMKLL--VPLEADVNVGETW 874 >gi|302340150|ref|YP_003805356.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293] gi|301637335|gb|ADK82762.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293] Length = 911 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 88/686 (12%), Positives = 192/686 (27%), Gaps = 155/686 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-------VHDPVMPQVL 57 +D ET S + + F+ D + + L Sbjct: 344 ALDIETDSLDAMLANP----------VGFSLAVSPKQAAYLPLIAEGQRKFDDDAVRERL 393 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGE 114 + V I+ HN ++ VL+ + + T+V A + + Sbjct: 394 VRLTSSPSVRIIGHNFKYDYKVLRRWGVVTKNLA--FDTMVAAWLLDTTANSYGMDPLAA 451 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 +L K K+++ ++ + Y D +T ++ Sbjct: 452 SL--LGYKTISFKDVVP-------------KDGLFQDISVETATRYAAEDADITFRFYEL 496 Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E L + + G + + ++ + ++ ++ Sbjct: 497 FRRQLKERGLEKLFFELEMPLVPILAEMECAGITLLSDRLEAYGRELEKDLGTIEDDIWQ 556 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L+ LF E L T+ +T VL + + V +R Sbjct: 557 ACGHS-FNINSTKQLQQVLFEERKLTPIKKTKTGYSTDISVLEELAREDVVPLLVLRHR- 614 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ ++ L + +N + T + TGR S QN+P Sbjct: 615 SLAKLKSTYVDALPKLVNPETGRIHTQLIQTGTATGRLSSKDPNLQNIPIRDEDGRR--- 671 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +RS + +EG + AD + IE VLA ++ + +A Sbjct: 672 ----------------------IRSAFVPAEGNLFISADYSQIELVVLAHLSEDPELSQA 709 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F +G D++ T + F+V+ A V+ +QR I K + + Y A + L ++ Sbjct: 710 FRSGGDVHRRTASLIFDVSEADVSSEQRRIAKTINFGVMYGMSAFRLSRE-----LGISR 764 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 ++ + ++F R + + + + +G + ++ Sbjct: 765 SRADSFISAYFRRYFRIQSFMRKVVQETEQSGVSKTLLGRE---------RSIPAINSRN 815 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 E + + + ML R + ++ + Sbjct: 816 KTEKAGAE------------RIAVNTPIQGTAADIVKLAMLAVSRRMASEELKSK----- 858 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDEIVCETPDTD 640 M+ ++ E P + Sbjct: 859 --------------------------------MVLQIHDE-----------LLFEVPFDE 875 Query: 641 EFNAS-MLYHLMTSNPSWAKGLPLKA 665 +L M S +PL+ Sbjct: 876 ADRMEGLLKEEMESAVK--LSVPLRV 899 >gi|160947654|ref|ZP_02094821.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270] gi|158446788|gb|EDP23783.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270] Length = 888 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 88/663 (13%), Positives = 197/663 (29%), Gaps = 130/663 (19%) Query: 22 CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81 Y + + + + + E N D+ I+ ++ E L Sbjct: 341 YIYRKKFYI-GI-YSNFNKKAYICKNFKLSDF-----EKFCNLDIKIIGYDIKEE---LF 390 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 ++ + ++L + + + + K + Sbjct: 391 FALKNNLEFKNYEDVMILEYLIDSNKGNYDILKVSNEFLNLEILDLKEMLGKGKNKKTFF 450 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 + + + +F D+ + + + + E+ L + + G VD Sbjct: 451 ELEEDIIFKFISQNVFAISALYDIFIEKAKENNLISLYENVEKPLVKVLADMEKTGVLVD 510 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 LN+ +Q++ L V + ++L LF + GL + T+ + Sbjct: 511 RNKIIELNEEYSKLAYLYEQKVYELAG-EVFNLNSPKQLGVILFEKIGLPVVKKTKTGYS 569 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL K + R ++ L+ ++E + DGR+R + + + + TG Sbjct: 570 TDVEVLEKLSKKHEIVDYILKYR-SLNKLISTYLDGILEYIMDDGRVRTSFKQMI-TATG 627 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P S + +R +A + K + Sbjct: 628 RLSSVDPNLQNIPIRSEEGK-------------------------NIRKVFVADKNKVFI 662 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA ++ + + +F+ D++ T + F V +VT +QR K + Sbjct: 663 DADYSQIELRVLAHLSKDSVMIDSFKNDLDIHYKTASEVFGVPINEVTDNQRRSAKAVNF 722 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y GL+ + Sbjct: 723 GIVYGIS---------DYGLSKD-----------------------------------LN 738 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + + + E+ ++ + Sbjct: 739 ITRNEARQYIDGYLNTYPSIKSYMEEIVNKAKK--------------------------D 772 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 + R ++ + R +Q + DI+ M+ Sbjct: 773 GFVTTILDRKRYIPEINSKNF---NIRSFGERIA------LNTPIQGSAADIIKLAMIKV 823 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYES 670 + ++L +HDE++ E ++++ + + M + + LPLK + E Sbjct: 824 YERLKIEKVNAKLILQIHDELIVECEESEKETVKKILKNSMENV--YKLDLPLKVDICEG 881 Query: 671 KRY 673 + + Sbjct: 882 RNW 884 >gi|38146965|gb|AAR11867.1| DNA polymerase I [Bacillus caldolyticus] Length = 878 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 88/668 (13%), Positives = 182/668 (27%), Gaps = 143/668 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82 D ++ A + + + L + S F+ V Sbjct: 330 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 383 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ + L+ A + V A KM++ + + + Sbjct: 384 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRSDEAVYGKGA-- 435 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196 R P+ + R E+ + + EQ L + + G Sbjct: 436 -KRAVPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 494 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + + + + ++Q + L + ++L LF + L + T+ Sbjct: 495 VKVDTKRLEQMGEELAEQLRTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 553 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + + R + + L++ + D + T+ Sbjct: 554 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 612 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372 ++TGR S QN+P + +R + SE Sbjct: 613 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 647 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 648 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 707 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ A Sbjct: 708 KAVNF--------------GIVYGISDYGLAQ---------------------------- 725 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + V ++ + G Sbjct: 726 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 770 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R D+ + R +Q + DI+ + Sbjct: 771 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 808 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ + ++L VHDE++ E P + L +M + +PLK Sbjct: 809 AMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 866 Query: 666 EGYESKRY 673 + + + Sbjct: 867 DYHYGSTW 874 >gi|161507870|ref|YP_001577834.1| DNA polymerase [Lactobacillus helveticus DPC 4571] gi|160348859|gb|ABX27533.1| DNA polymerase [Lactobacillus helveticus DPC 4571] Length = 887 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 99/676 (14%), Positives = 207/676 (30%), Gaps = 140/676 (20%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73 L G + + F+ +D D + + +K LE+ + N Sbjct: 330 LEMLGANYHLAPF--VGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV 380 Query: 74 YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 F+ V + + L+ + + +GE L K + Sbjct: 381 -FDLKRTMVAAHRLGIHTHGLDY-DMLLASYLINNENNSNDLGEIAHL--YGDYSVKTDL 436 Query: 131 ARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189 + KG++ D ++ + A + E K + + ++ + E + Sbjct: 437 EVYGKGKSEHIPDDDDELFNHLASKVNAIESLKKTLLEKLKDHEQDALFDTIEIPTARVL 496 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G V+ + L V+ KL+ ++ + ++L LF + GL Sbjct: 497 ARMEMNGMKVEASTLIQLQNEFAVKLKKLEDKIYGQAG-EKFNLNSPKQLGHILFEKLGL 555 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T+ +T VL K +P ++ + R ++ + L++ + DGR+ Sbjct: 556 PVIKKTKTGYSTSVEVLDQLKTQSPIVSKILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHT 614 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 + TGR S QN+P + + +R Sbjct: 615 RYLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRK 648 Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424 + + D + +E RVLA ++G+Q +AF+TG D++ T + F++ P +V Sbjct: 649 AFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEV 708 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T R K + G++ + Sbjct: 709 TPLMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 734 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + +++ ++ + N +A ++ + G A Sbjct: 735 ----------NLGISRKRAQEFIDNYFEQYPQIKDYMN---KAVQEARDKGYAETIMH-- 779 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 R D+ + T R +Q Sbjct: 780 ---------------------RRRYLPDIHAKK---YTVRAFAERTAINSP------IQG 809 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657 + DI+ M+N K +V+ VHDE++ + P + + +M S Sbjct: 810 SAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEVMQSAVK- 868 Query: 658 AKGLPLKAEGYESKRY 673 +PL A+ + Sbjct: 869 -LDVPLIADSGWGHNW 883 >gi|3913510|sp|O52225|DPO1_THEFI RecName: Full=DNA polymerase I, thermostable; AltName: Full=TFI polymerase 1 gi|2739139|gb|AAC46079.1| thermostable DNA polymerase [Thermus filiformis] Length = 833 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 100/610 (16%), Positives = 189/610 (30%), Gaps = 151/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + VL + + L++A + + V + + L++ Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTHPEGVARRYGGEFTEDAAERALLSE-- 412 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 RLF +++ E+ L + + Sbjct: 413 --------------------RLFQNLFPRLSEKLLWLYQ------EVERPLSRVLAHMEA 446 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--- 251 RG +DV L L+ ++ E +L+ E+ L + ++L+ LF E GL Sbjct: 447 RGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHP-FNLNSRDQLERVLFDELGLTPVGR 505 Query: 252 -EDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 E + +T Q L + + P + R S+ L+ L ++ GRL Sbjct: 506 TEKTGKRSTAQGALEALRGAHPIVELILQYR-ELSKLKSTYLDPLPRLVHPRTGRLHTRF 564 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 565 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRKAF 598 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 +A EG L+ AD + IE RVLA ++G++ + F G+D++ T A F + PA V Sbjct: 599 VAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKM 658 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ + + + + Sbjct: 659 RRAAKTVNF--------------GVLYGMSAHRLSQELGID------------------- 685 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 E + + Q +V + + E+ G Sbjct: 686 -----------YKEAEAFIERYFQSFPKVRAW---IERTLEEGRTRGYVETL-------- 723 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + + R VQ + D Sbjct: 724 ---------------FGRRRYVPDLASR---VRSVREAAERMAFNMP------VQGTAAD 759 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPL 663 ++ M+ G ++L VHDE+V E P+ E +++ +M + + +PL Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENA--YPLDVPL 817 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 818 EVEVGVGRDW 827 >gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus] Length = 834 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 97/610 (15%), Positives = 187/610 (30%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + VL + LD+ ++LA + + V + + L++ Sbjct: 357 DLAVLASREGLDLVPG--DDPMLLAYLLDPSNTTPEGVARRYGGEWTEDAAHRALLS--- 411 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 H+ L R + + W ++ +E S + + Sbjct: 412 -ERLHQNLLKRLQGEEKLLW----------------LYHEVEKPLS------RVLAHMEA 448 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-LED 253 G +DVA L+ + E +L++E+ L + ++L+ LF E L L Sbjct: 449 TGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHP-FNLNSRDQLERVLFDELRLPALGK 507 Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 + +T VL + ++ P ++ +R ++ ++ L ++ GRL Sbjct: 508 TQKTGKRSTSAAVLEALREAHPIVEKILQHR-ELTKLKNTYVDPLPSLVHPRTGRLHTRF 566 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 567 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 600 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 +A G LV D + IE RVLA ++G++ ++ F+ G+D++ T + F V P V Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 661 RRAAKTVNF--------------GVLYGMS------------------------------ 676 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + Q +V + + E+ + G Sbjct: 677 AHRLSQELSIPYEEASAFIERYFQSFPKVRAW---IEKTLEEGRKRGYVETL-------- 725 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 726 ---------------FGRRRYVPDLNAR---VKSVREAAERMAFNMP------VQGTAAD 761 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE++ E P + L M A +PL Sbjct: 762 LMKLAMVKLFPRLRQMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA--VPL 819 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 820 EVEAGIGEDW 829 >gi|257875613|ref|ZP_05655266.1| DNA polymerase I [Enterococcus casseliflavus EC20] gi|257809779|gb|EEV38599.1| DNA polymerase I [Enterococcus casseliflavus EC20] Length = 881 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 87/658 (13%), Positives = 187/658 (28%), Gaps = 134/658 (20%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 + + + V L++ + +++ L P Sbjct: 337 VGVAWGNQEKIYVSNREELFESPVFTNWLKDEERKKFVYDAKRTYVALNRYT--TAPKGI 394 Query: 93 WICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 L+ A V + + +E + L + Sbjct: 395 AFDVLLAAYLLDTNDTNNDIAGVAAHYGYDAIQSDE------AIYGKGAKKGLPADEEDF 448 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTL 207 R +T E+ + + E L + + G VD + H + Sbjct: 449 FAHLARKVAAITNLTPKLTEELAAKNQTALFEEMELPLSMILADMEITGIKVDASRLHQM 508 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 ++++++ + + ++L LF + GL + T+ +T VL Sbjct: 509 KGEFAQRLHEIEEKIYAEAG-ETFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 567 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ P + R ++ + L++ + DG++ ++TGR S Sbjct: 568 QLKEQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQGDGKVHTRYVQ-TLTQTGRLSSVDP 625 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAG 383 QN+P + +R + E + +D + Sbjct: 626 NLQNIPIRLEEGRK-------------------------IREAFVPREADWVIYSSDYSQ 660 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQ 442 IE RVLA ++ + +AF G+D++ +T R F + VT + R K + Sbjct: 661 IELRVLAHISDDTHLKEAFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNF----- 715 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 G++ + A Sbjct: 716 ---------GIVYGISDYGLSQ------------------------------NLGITRKA 736 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 ++ + +K+ V ++ + + + Sbjct: 737 AQQYIDTYFEKYPGVKTYMEDVVREAKD--------------------------KGYVET 770 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----- 617 R D+ + + T R +Q + DIL M++ Sbjct: 771 LYHRRRYLPDINSRNFNIRTF---AERTAINTP------IQGSAADILKIAMIDLVKRLK 821 Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 K ++L VHDE+V E P+++ +++ +M A +PL + K + Sbjct: 822 EEKLAATMLLQVHDELVFEVPESELPRLDALVKEVMEQAV--ALHVPLLTDSNWGKTW 877 >gi|307243137|ref|ZP_07525311.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678] gi|306493497|gb|EFM65476.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678] Length = 880 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 93/646 (14%), Positives = 199/646 (30%), Gaps = 141/646 (21%) Query: 49 HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108 H + + ++ LE+ D+ + + + LK +D+ + + ++ Sbjct: 351 HGDDILK-IRTILEDEDIEKIGYEMKADYVALKPY-GIDLR-NMAFDIAIAEYVIDSKTS 407 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + + S + + I E + + +Y G ++ Sbjct: 408 -----TSYDIDSISSKYIYKTI---MSKEDLLGKGAKALDYRQVDLEKLDQYVSGMLSTI 459 Query: 169 REIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + +++ + ++Q L + + G CVD + L + D K Sbjct: 460 IGSYPKMKKIIDEDQLSMLFYDVEMPLVEVLAEMEYAGICVDRDILSNLAKDFDEIIDKT 519 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQ 275 ++ + L + ++L LF + GL + T+ +T VL + Sbjct: 520 EKNIHELAGQD-FNVNSPKQLGHILFEKLGLPVIKKTKTGYSTNAEVLEKLRDKHEIINM 578 Query: 276 VFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + R + ++ + +N DGR+ + + TGR S QN+P + Sbjct: 579 ITEYRSVV-KLKSTYVDGIEALVNAKDGRIHSSFNQ-TITTTGRISSTDPNMQNIPVRTD 636 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R IA + LV AD + +E RVLA M+ Sbjct: 637 MGR-------------------------QIRKVFIAGDSMSLVDADYSQVELRVLAHMSQ 671 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + ++AF +GED++ T ++ FNV QVT + R+ K + + Sbjct: 672 DPHMIEAFNSGEDIHRKTASQVFNVDFNQVTPELRSAAKAVNFGII-------------- 717 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 ++ A + + +++ K+ Sbjct: 718 ------------------------------YGKSDFGLAQDLNISQKKAKEYIESYFNKY 747 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + + E G + R ++ Sbjct: 748 ETIKAFMDHI---VSEAEEKGYSTTIFN-----------------------RRRYIPEIK 781 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 ++ + R +Q + DI+ M+N ++L V Sbjct: 782 SSNFVEKN---RGKRAAMNAP------IQGSAADIIKIAMVNVYNRLKEKGLKSRLILQV 832 Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 HDE++ E + +L M + G+ LK + K + Sbjct: 833 HDELIVEATADELTQVEVLLREEMENAV--NLGVDLKVDLNIGKSW 876 >gi|227543926|ref|ZP_03973975.1| DNA polymerase I [Lactobacillus reuteri CF48-3A] gi|300909675|ref|ZP_07127136.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112] gi|227186077|gb|EEI66148.1| DNA polymerase I [Lactobacillus reuteri CF48-3A] gi|300893540|gb|EFK86899.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112] Length = 888 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 91/632 (14%), Positives = 193/632 (30%), Gaps = 129/632 (20%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVG 113 LK+ L++ V N+ + L + + L+ + L V Sbjct: 366 LKDLLQSDSVKKNVFNAKAQIVGLHR-LGIPLENIN-FDLLLASYLLNTNDNSNDLGQVA 423 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + +E + D +H E+ + D + K Sbjct: 424 QEHGYDDVRTDE----EVYGKGAKRAVPDDDETFFSHLATKARAIEHLRKDFFAKLDENK 479 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + + E L + + G VD + + ++++ ++ + Sbjct: 480 QTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQIYQEAG-EEFNI 538 Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF + L + T+ +T VL +P Q+ R ++ Sbjct: 539 NSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEKLADKSPIVEQILEYRQ-IAKLQSTY 597 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L++ ++S+ + T ++TGR S QN+P Sbjct: 598 ITGLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGR------------- 644 Query: 351 TSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R + S EG ++ +D + +E RVLA + G++ + F+ GED++ Sbjct: 645 ------------LIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIH 692 Query: 410 VTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 +T R F++AP ++ ++ R K + + Y ++++ Sbjct: 693 ASTARRIFHLAPDAEIDRNMRRRAKAVNFGIVYGIS-----DYGLAQRIHVSRAEAHEFI 747 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + E+ + + E+ + Sbjct: 748 QNYFHEFPGVKKYINDTIAFAKENGYVETIT----------------------------- 778 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 +RR +P ++ K R+ +NT Sbjct: 779 ------------HRRRYLPDIHAKSFSKRSF---------------AERTAMNT------ 805 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEF 642 +Q + DI+ M+ ++L +HDE+V E P + Sbjct: 806 ------------PIQGSAADIIKIAMIRMQDELEKRHLKAKMLLQIHDELVFEAPKEEIP 853 Query: 643 NASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 S L +M S +PLK + + Sbjct: 854 ILSELVPKVMDSAVK--LDVPLKVDSKYGDTW 883 >gi|257865986|ref|ZP_05645639.1| DNA polymerase I [Enterococcus casseliflavus EC30] gi|257872319|ref|ZP_05651972.1| DNA polymerase I [Enterococcus casseliflavus EC10] gi|257799920|gb|EEV28972.1| DNA polymerase I [Enterococcus casseliflavus EC30] gi|257806483|gb|EEV35305.1| DNA polymerase I [Enterococcus casseliflavus EC10] Length = 881 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 87/658 (13%), Positives = 187/658 (28%), Gaps = 134/658 (20%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 + + + V L++ + +++ L P Sbjct: 337 VGVAWGNQEKIYVSNREELFESPVFTNWLKDEERKKFVYDAKRTYVALNRYT--TAPKGI 394 Query: 93 WICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 L+ A V + + +E + L + Sbjct: 395 AFDVLLAAYLLDTNDTNNDIAGVAAHYGYDAIQSDE------AIYGKGAKKGLPADEEDF 448 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTL 207 R +T E+ + + E L + + G VD + H + Sbjct: 449 FAHLARKVAAITNLTPKLTEELAAKNQTALFEEMELPLSMILADMEITGIKVDASRLHQM 508 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 ++++++ + + ++L LF + GL + T+ +T VL Sbjct: 509 KGEFAQRLHEIEEKIYAEAG-ETFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 567 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ P + R ++ + L++ + DG++ ++TGR S Sbjct: 568 QLKEQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQGDGKVHTRYVQ-TLTQTGRLSSVDP 625 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAG 383 QN+P + +R + E + +D + Sbjct: 626 NLQNIPIRLEEGRK-------------------------IREAFVPREADWVIYSSDYSQ 660 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQ 442 IE RVLA ++ + +AF G+D++ +T R F + VT + R K + Sbjct: 661 IELRVLAHISDDTHLKEAFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNF----- 715 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 G++ + A Sbjct: 716 ---------GIVYGISDYGLSQ------------------------------NLGITRKA 736 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 ++ + +K+ V ++ + + + Sbjct: 737 AQQYIDTYFEKYPGVKTYMEDVVREAKD--------------------------KGYVET 770 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----- 617 R D+ + + T R +Q + DIL M++ Sbjct: 771 LYHRRRYLPDINSRNFNIRTF---AERTAINTP------IQGSAADILKIAMIDLAKRLK 821 Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 K ++L VHDE+V E P+++ +++ +M A +PL + K + Sbjct: 822 EEKLAATMLLQVHDELVFEVPESELPRLDALVKEVMEQAV--ALHVPLLTDSNWGKTW 877 >gi|329667767|gb|AEB93715.1| DNA polymerase I [Lactobacillus johnsonii DPC 6026] Length = 886 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 100/663 (15%), Positives = 206/663 (31%), Gaps = 141/663 (21%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL- 86 + F+ + DPV+ Q L + LE+ + N F+ + L Sbjct: 342 IEGFSLKVGNK----IYVSKDPVLLQENPLHKMLEDKTIKK---NV-FDIK--RTYVGLH 391 Query: 87 --DIPIHRWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 D+ L+ + + +GE L K + + KG+ Sbjct: 392 RLDLKAEGLDYDMLLASYLVNNENNSNDLGEVAHLYDD--YSVKTDLEVYGKGKKQAVPN 449 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 D H A E K + + ++ + + E + ++ + G V+ ++ Sbjct: 450 DNEFFEHLAAKVAVIEKLKTQLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASV 509 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260 + L V+ +L+ ++ + ++L LF + GL T+ +T Sbjct: 510 LNQLGNDFAVKLQELEHKIYQQAG-EEFNLNSPKQLGHILFEKLGLPPIKKTKTGYSTSV 568 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL K +P ++ + R ++ + L++ + DGR+ + TGR S Sbjct: 569 EVLEQLKMKSPIVSEILDYRQ-IAKIQNTYVKGLLDCIQPDGRIHTRYLQ-TLTTTGRLS 626 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA--SEGKKLVV 378 QN+P + + +R + +G Sbjct: 627 SVDPNLQNIPTKTEEGK-------------------------QIRKAFVPSTKDGYIF-S 660 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMEL 437 D + +E RVLA ++G++ +AF++G D++ T + F++ P +VT R K + Sbjct: 661 CDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNF 720 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 G++ + Sbjct: 721 --------------GIVYGISDYGLSK------------------------------NLG 736 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + + +++ ++ +A ++ ENG A Sbjct: 737 ISRKQAKTFIENYFEQYPQIKNYM---DEAIKKARENGYAETIMH--------------- 778 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R D+ + R +Q + DI+ M+N Sbjct: 779 --------RRRYLPDIHSKNF---NVRSFAERTAINSP------IQGSAADIIKIAMINM 821 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYES 670 K +VL VHDE++ + P + + +M S +PL A+ Sbjct: 822 QKKLDELHLKTKMVLQVHDELIFDVPKDELNTIKKIVPEVMQSAVK--LDVPLIADSNWG 879 Query: 671 KRY 673 + Sbjct: 880 HNW 882 >gi|210077501|gb|ACJ07015.1| PolI [Thermus sp. YSP2A.A1] Length = 832 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 104/610 (17%), Positives = 185/610 (30%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + +VL L +P ++LA + + V Sbjct: 355 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 395 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 GE E +R + R L+G R ++ E+ L + + Sbjct: 396 -GEWTEEAGERATLSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 446 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250 G +DVA L+ V E +L+ E+ L + ++L+ LF E GL Sbjct: 447 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHS-FNLNSRDQLERVLFDELGLPAIGK 505 Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 E + +T VL + ++ P ++ R ++ ++ L + ++ GRL Sbjct: 506 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 564 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 565 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 598 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V V Sbjct: 599 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 658 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 659 RRAAKTINF--------------GVLYGMS------------------------------ 674 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + Q +V + + E+ G Sbjct: 675 AHRLSQELAIPYEEAQAFIGRYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 723 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 724 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 759 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE+V E P + L +M A +PL Sbjct: 760 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 817 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 818 EVEVGIGEDW 827 >gi|297529110|ref|YP_003670385.1| DNA polymerase I [Geobacillus sp. C56-T3] gi|297252362|gb|ADI25808.1| DNA polymerase I [Geobacillus sp. C56-T3] Length = 876 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 88/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82 D ++ A + + + L + S F+ V Sbjct: 328 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 381 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ + L+ A + V A KM++ + + Sbjct: 382 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 433 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196 R P+ + R E+ + + EQ L + + G Sbjct: 434 -KRAVPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 492 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + + + + ++Q + L + ++L LF + L + T+ Sbjct: 493 VKVDTKRLEQMGEELAEQLRTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 551 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + + R + + L++ + D + T+ Sbjct: 552 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372 ++TGR S QN+P + +R + SE Sbjct: 611 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 646 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 705 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ A Sbjct: 706 KAVNF--------------GIVYGISDYGLAQ---------------------------- 723 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + V ++ + G Sbjct: 724 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 768 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R D+ + R +Q + DI+ + Sbjct: 769 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 806 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ + ++L VHDE++ E P + L +M + +PLK Sbjct: 807 AMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 864 Query: 666 EGYESKRY 673 + + + Sbjct: 865 DYHYGSTW 872 >gi|293556212|ref|ZP_06674802.1| DNA polymerase I [Enterococcus faecium E1039] gi|294615648|ref|ZP_06695503.1| DNA polymerase type I [Enterococcus faecium E1636] gi|291591477|gb|EFF23131.1| DNA polymerase type I [Enterococcus faecium E1636] gi|291601631|gb|EFF31893.1| DNA polymerase I [Enterococcus faecium E1039] Length = 881 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 86/665 (12%), Positives = 189/665 (28%), Gaps = 142/665 (21%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86 ++ A+G + +D + + + + +++ L Sbjct: 335 EIVGVAWGTEKK----IYVTNDLSVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTG- 389 Query: 87 DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 L+ A ++ + + + +E + L Sbjct: 390 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------AVYGKGAKKGL 441 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200 + + R +++E+ + + ++ EL + + G VD Sbjct: 442 PEEEELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISGIKVD 501 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + +++Q++ + ++L LF + GL + T+ + Sbjct: 502 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 560 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL ++ P + R ++ + L++ + SDG++ ++TG Sbjct: 561 TAVDVLEQLREQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQSDGKVHTRYVQ-TLTQTG 618 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376 R S QN+P + +R + E + Sbjct: 619 RLSSVDPNLQNIPIRLDEGRK-------------------------IRQAFVPREKDWLI 653 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVM 435 +D + IE RVLA ++ ++ AF G+D++ +T R F + VT + R K + Sbjct: 654 YSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAV 713 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ + Sbjct: 714 N--------------FGIVYGISDYGLSQ------------------------------N 729 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 A ++ + +K+ V E + + + Sbjct: 730 LGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKN------------------------- 764 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + R D+ + R +Q + DIL M+ Sbjct: 765 -QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINTP------IQGSAADILKIAMI 814 Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 K ++L VHDE+V E P+ + + L +M S +PL + Sbjct: 815 ELDKRLKEAGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSS 872 Query: 669 ESKRY 673 K + Sbjct: 873 WGKTW 877 >gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737] Length = 830 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 102/610 (16%), Positives = 180/610 (29%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + +VL +IP ++LA + + V ++ + L++ Sbjct: 353 DLSVLALREGREIPPG--DDPMLLAYLLDPGNTNPEGVARRYGGEWKEDAAARALLSERL 410 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 W+ R ++ E+ L + + Sbjct: 411 -------------------WQALYP---RVAEEERLLWLYR----EVERPLAQVLAHMEA 444 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 G +DV L+Q V E +L+ E+ L + ++L+ LF E GL Sbjct: 445 TGVRLDVPYLEALSQEVAFELERLEAEVHRLAGHP-FNLNSRDQLERVLFDELGLPPIGK 503 Query: 255 T-----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 T +T VL ++ P ++ R + ++ L ++ GRL Sbjct: 504 TEKTGKRSTSAAVLELLREAHPIVGRILEYR-ELMKLKSTYIDPLPRLVHPKTGRLHTRF 562 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 563 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRKAF 596 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA EG LV D + IE RVLA ++G++ ++ F G+D++ T A F V P V Sbjct: 597 IAEEGHLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTETAAWMFGVPPEGVDGAM 656 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 657 RRAAKTVN--------------FGVLYGMS------------------------------ 672 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + Q +V + + E+ + G Sbjct: 673 AHRLSQELSIPYEEAAAFIERYFQSFPKVRAW---IAKTLEEGRKKGYVETL-------- 721 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 722 ---------------FGRRRYVPDLNAR---VKSVREAAERMAFNMP------VQGTAAD 757 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ G I+L VHDE+V E P A+ L M + +PL Sbjct: 758 LMKLAMVKLFPRLRPLGVRILLQVHDELVLEAPKARAEEAAQLAKETMEGV--YPLSVPL 815 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 816 EVEVGMGEDW 825 >gi|144704831|gb|ABP02067.1| DNA polymerase [Bacillus caldolyticus] Length = 878 Score = 307 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 88/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82 D ++ A + + + L + S F+ V Sbjct: 330 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 383 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ + L+ A + V A KM++ + + Sbjct: 384 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 435 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196 R P+ + R E+ + + EQ L + + G Sbjct: 436 -KRAVPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 494 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + + + + ++Q + L + ++L LF + L + T+ Sbjct: 495 VKVDTKRLEQMGEELAEQLRTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 553 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + + R + + L++ + D + T+ Sbjct: 554 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 612 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372 ++TGR S QN+P + +R + SE Sbjct: 613 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 647 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 648 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 707 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ A Sbjct: 708 KAVNF--------------GIVYGISDYGLAQ---------------------------- 725 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + V ++ + G Sbjct: 726 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 770 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R D+ + R +Q + DI+ + Sbjct: 771 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 808 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ + ++L VHDE++ E P + L +M + +PLK Sbjct: 809 AMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 866 Query: 666 EGYESKRY 673 + + + Sbjct: 867 DYHYGSTW 874 >gi|257882837|ref|ZP_05662490.1| DNA polymerase A [Enterococcus faecium 1,231,502] gi|261207884|ref|ZP_05922569.1| DNA polymerase A [Enterococcus faecium TC 6] gi|289566952|ref|ZP_06447356.1| DNA polymerase I [Enterococcus faecium D344SRF] gi|293569014|ref|ZP_06680327.1| DNA polymerase I [Enterococcus faecium E1071] gi|294623286|ref|ZP_06702151.1| DNA polymerase I [Enterococcus faecium U0317] gi|257818495|gb|EEV45823.1| DNA polymerase A [Enterococcus faecium 1,231,502] gi|260078267|gb|EEW65973.1| DNA polymerase A [Enterococcus faecium TC 6] gi|289161251|gb|EFD09147.1| DNA polymerase I [Enterococcus faecium D344SRF] gi|291588447|gb|EFF20282.1| DNA polymerase I [Enterococcus faecium E1071] gi|291597314|gb|EFF28500.1| DNA polymerase I [Enterococcus faecium U0317] Length = 881 Score = 307 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 86/665 (12%), Positives = 189/665 (28%), Gaps = 142/665 (21%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86 ++ A+G + +D + + + + +++ L Sbjct: 335 EIVGVAWGTEKK----IYVTNDLSVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTG- 389 Query: 87 DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 L+ A ++ + + + +E + L Sbjct: 390 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------AVYGKGAKKGL 441 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200 + + R +++E+ + + ++ EL + + G VD Sbjct: 442 PEEEELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISGIKVD 501 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + +++Q++ + ++L LF + GL + T+ + Sbjct: 502 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 560 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL ++ P + R ++ + L++ + SDG++ ++TG Sbjct: 561 TAVDVLEQLREQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQSDGKVHTRYVQ-TLTQTG 618 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376 R S QN+P + +R + E + Sbjct: 619 RLSSVDPNLQNIPIRLDEGRK-------------------------IRQAFVPREKDWLI 653 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVM 435 +D + IE RVLA ++ ++ AF G+D++ +T R F + VT + R K + Sbjct: 654 YSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAV 713 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ + Sbjct: 714 N--------------FGIVYGISDYGLSQ------------------------------N 729 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 A ++ + +K+ V E + + + Sbjct: 730 LGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKD------------------------- 764 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + R D+ + R +Q + DIL M+ Sbjct: 765 -QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINTP------IQGSAADILKIAMI 814 Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 K ++L VHDE+V E P+ + + L +M S +PL + Sbjct: 815 ELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSS 872 Query: 669 ESKRY 673 K + Sbjct: 873 WGKTW 877 >gi|261418256|ref|YP_003251938.1| DNA polymerase I [Geobacillus sp. Y412MC61] gi|319767784|ref|YP_004133285.1| DNA polymerase I [Geobacillus sp. Y412MC52] gi|261374713|gb|ACX77456.1| DNA polymerase I [Geobacillus sp. Y412MC61] gi|317112650|gb|ADU95142.1| DNA polymerase I [Geobacillus sp. Y412MC52] Length = 876 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 88/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82 D ++ A + + + L + S F+ V Sbjct: 328 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 381 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ + L+ A + V A KM++ + + Sbjct: 382 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 433 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196 R P+ + R E+ + + EQ L + + G Sbjct: 434 -KRAVPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 492 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + + + + ++Q + L + ++L LF + L + T+ Sbjct: 493 VKVDTKRLEQMGEELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 551 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + + R + + L++ + D + T+ Sbjct: 552 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372 ++TGR S QN+P + +R + SE Sbjct: 611 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 646 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 705 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ A Sbjct: 706 KAVNF--------------GIVYGISDYGLAQ---------------------------- 723 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + V ++ + G Sbjct: 724 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 768 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R D+ + R +Q + DI+ + Sbjct: 769 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 806 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ + ++L VHDE++ E P + L +M + +PLK Sbjct: 807 AMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 864 Query: 666 EGYESKRY 673 + + + Sbjct: 865 DYHYGSTW 872 >gi|257878419|ref|ZP_05658072.1| DNA polymerase A [Enterococcus faecium 1,230,933] gi|257889382|ref|ZP_05669035.1| DNA polymerase A [Enterococcus faecium 1,231,410] gi|257894395|ref|ZP_05674048.1| DNA polymerase A [Enterococcus faecium 1,231,408] gi|260560008|ref|ZP_05832186.1| DNA polymerase A [Enterococcus faecium C68] gi|293559954|ref|ZP_06676462.1| DNA polymerase I [Enterococcus faecium E1162] gi|314937782|ref|ZP_07845099.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04] gi|314941672|ref|ZP_07848552.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C] gi|314950962|ref|ZP_07854029.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A] gi|314992964|ref|ZP_07858360.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B] gi|314996411|ref|ZP_07861454.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01] gi|257812647|gb|EEV41405.1| DNA polymerase A [Enterococcus faecium 1,230,933] gi|257825742|gb|EEV52368.1| DNA polymerase A [Enterococcus faecium 1,231,410] gi|257830774|gb|EEV57381.1| DNA polymerase A [Enterococcus faecium 1,231,408] gi|260073843|gb|EEW62167.1| DNA polymerase A [Enterococcus faecium C68] gi|291606042|gb|EFF35468.1| DNA polymerase I [Enterococcus faecium E1162] gi|313589393|gb|EFR68238.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01] gi|313592487|gb|EFR71332.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B] gi|313596817|gb|EFR75662.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A] gi|313599563|gb|EFR78406.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C] gi|313642813|gb|EFS07393.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04] Length = 881 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 86/665 (12%), Positives = 190/665 (28%), Gaps = 142/665 (21%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86 ++ A+G + +D + + + + +++ L Sbjct: 335 EIVGVAWGTEKK----IYVTNDLSVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTG- 389 Query: 87 DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 L+ A ++ + + + +E + L Sbjct: 390 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------AVYGKGAKKGL 441 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200 + + R +++E+ ++ + ++ EL + + G VD Sbjct: 442 PEEEELFFAHLARKVAAINALTPKLSQELAEKNQEDLFRKMELPLSIILAEMEISGIKVD 501 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + +++Q++ + ++L LF + GL + T+ + Sbjct: 502 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 560 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL ++ P + R ++ + L++ + SDG++ ++TG Sbjct: 561 TAVDVLEQLREQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQSDGKVHTRYVQ-TLTQTG 618 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376 R S QN+P + +R + E + Sbjct: 619 RLSSVDPNLQNIPIRLDEGRK-------------------------IRQAFVPREKDWLI 653 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVM 435 +D + IE RVLA ++ ++ AF G+D++ +T R F + VT + R K + Sbjct: 654 YSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAV 713 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ + Sbjct: 714 N--------------FGIVYGISDYGLSQ------------------------------N 729 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 A ++ + +K+ V E + + + Sbjct: 730 LGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKD------------------------- 764 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + R D+ + R +Q + DIL M+ Sbjct: 765 -QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINTP------IQGSAADILKIAMI 814 Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 K ++L VHDE+V E P+ + + L +M S +PL + Sbjct: 815 ELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSS 872 Query: 669 ESKRY 673 K + Sbjct: 873 WGKTW 877 >gi|257898348|ref|ZP_05678001.1| DNA polymerase A [Enterococcus faecium Com15] gi|257836260|gb|EEV61334.1| DNA polymerase A [Enterococcus faecium Com15] Length = 881 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 85/665 (12%), Positives = 184/665 (27%), Gaps = 142/665 (21%) Query: 29 CVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 ++ + D Q + + +++ L Sbjct: 335 EIVGV--AWGTEKKIYVTNDLSVFEN--QAFHSWITDPTRLKKVYDAKRTYVALNRYTG- 389 Query: 87 DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 L+ A ++ + + + +E + L Sbjct: 390 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------TVYGKGAKKGL 441 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200 + + R +++E+ + + ++ EL + + G VD Sbjct: 442 PEEEELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISGIKVD 501 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + +++Q++ + ++L LF + GL + T+ + Sbjct: 502 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 560 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL ++ P + R ++ + L++ + SDG++ ++TG Sbjct: 561 TAVDVLEQLREQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQSDGKVHTRYVQ-TLTQTG 618 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376 R S QN+P + +R + E + Sbjct: 619 RLSSVDPNLQNIPIRLDEGRK-------------------------IRQAFVPREKDWLI 653 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVM 435 +D + IE RVLA ++ ++ AF G+D++ +T R F + VT + R K + Sbjct: 654 YSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAV 713 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ + Sbjct: 714 N--------------FGIVYGISDYGLSQ------------------------------N 729 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 A ++ + +K+ V E + + + Sbjct: 730 LGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKD------------------------- 764 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + R D+ + R +Q + DIL M+ Sbjct: 765 -QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINTP------IQGSAADILKIAMI 814 Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 K ++L VHDE+V E P+ + + L +M S +PL + Sbjct: 815 ELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKKVMEQAVS--LHVPLITDSS 872 Query: 669 ESKRY 673 K + Sbjct: 873 WGKTW 877 >gi|149882966|ref|YP_001294903.1| DNA polymerase I [Burkholderia phage BcepNY3] gi|148763617|gb|ABR10600.1| DNA polymerase I [Burkholderia phage BcepNY3] Length = 656 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 184/705 (26%), Positives = 282/705 (40%), Gaps = 84/705 (11%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLK 58 LF+DFET S DLT+ G+ +Y D + F F +LW+ +P+V+ Sbjct: 4 RLLFLDFETSSHTDLTEHGLGRYLADQSTRAYCFTFRLPGMSTADLWEV--GQRVPEVIT 61 Query: 59 EALENTDVTIVAHNSYFER----TVLKACFNL----DIPIHRWICTLVLARSNGLPSALK 110 + VAHN+ F+ TVL+ ++ I + C+ AR NGLP +L Sbjct: 62 RHVR-AGHLFVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLA 120 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 EAL L QK EG + + D +H E + +Y D Sbjct: 121 GACEALGLPVQKDTEGAKWMKEIAANP------DWTPADHPEHFARTYKYALIDTDAMVG 174 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +++ PL ++EQ + +D IN RG VDV A + + +LD E+ LT G V Sbjct: 175 VWENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGV 234 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +EK+K G ++D T +++ ++ L Q+ R+ ASR+ K Sbjct: 235 LAVSEVEKIK-TYAATLGEDMDDAGRETLKKI-AARDNLPDSLRQLIELRLDASRAP--K 290 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL----PRPSRSHEELDQIITHL 346 + + + GRL+ + + GA + Q L PRP + + + I+ Sbjct: 291 KSAAILRAHVGGRLQHSTIYHGALSGRSTARGAGGAQTLNTARPRPGKKTADCEAILDAC 350 Query: 347 PTSITSD------PDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + L ++D R A G LV ADL+GIEAR W+AG+ L Sbjct: 351 LRHDRAYLSSPEVGPILAALADAQRQLFRATQPGHVLVGADLSGIEARFSPWIAGDLELL 410 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AFE G D Y A F V VTKDQR IGKV LAL Y GGA AF MA+ G++L Sbjct: 411 EAFEKGVDPYKLAAAAIFQVTYEAVTKDQRQIGKVAMLALTYGGGAGAFVSMAANYGVHL 470 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + WR Sbjct: 471 PPEQ---------------------------------------VDEIVLNWRAARPAFER 491 Query: 520 LWNELHQAFEQTIE--NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--- 574 W+ + ++ N + + R V D L + LPSGR++ Y + Sbjct: 492 WWSLCEYSVLMALDQPNREITMPIGRDFCSHVTFVHDGRALRMQLPSGRAISYHNARLHL 551 Query: 575 --NNRSYLNTTTRQLTREYTYGGKLT-ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 + + T K+ N+ Q ++RD+ +++ + IV V+DE Sbjct: 552 EPGANVPIAIYDKPEGYIETLDRKILSNNMTQGLARDLFWSVLLDVDRVE-QIVHHVYDE 610 Query: 632 IVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + E + E L M +W GLPL AEG+ R+RK Sbjct: 611 ALLEVREEVAELRCDQLVERMCRGEAWCPGLPLGAEGWFGLRWRK 655 >gi|314948920|ref|ZP_07852289.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082] gi|313644710|gb|EFS09290.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082] Length = 881 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 86/665 (12%), Positives = 190/665 (28%), Gaps = 142/665 (21%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86 ++ A+G + +D + + + + +++ L Sbjct: 335 EIVGVAWGTEKK----IYVTNDLSVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTG- 389 Query: 87 DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 L+ A ++ + + + +E + L Sbjct: 390 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------AVYGKGAKKGL 441 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200 + + R +++E+ ++ + ++ EL + + G VD Sbjct: 442 PEEEELFFAHLARKVAAINALTPKLSQELAEKNQEDLFRKMELPLSIILAEMEISGIKVD 501 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + +++Q++ + ++L LF + GL + T+ + Sbjct: 502 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 560 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL ++ P + R ++ + L++ + SDG++ ++TG Sbjct: 561 TAVDVLEQLREQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQSDGKVHTRYVQ-TLTQTG 618 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376 R S QN+P + +R + E + Sbjct: 619 RLSSVDPNLQNIPIRLDEGRK-------------------------IRQAFVPREKDWLI 653 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVM 435 +D + IE RVLA ++ ++ AF G+D++ +T R F + VT + R K + Sbjct: 654 YSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAV 713 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ + Sbjct: 714 N--------------FGIVYGISDYGLSQ------------------------------N 729 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 A ++ + +K+ V E + + + Sbjct: 730 LGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKD------------------------- 764 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + R D+ + R +Q + DIL M+ Sbjct: 765 -QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINTP------IQGSAADILKIAMI 814 Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 K ++L VHDE+V E P+ + + L +M S +PL + Sbjct: 815 ELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSS 872 Query: 669 ESKRY 673 K + Sbjct: 873 WGKTW 877 >gi|55670162|pdb|1U45|A Chain A, 8oxoguanine At The Pre-Insertion Site Of The Polymerase Active Site gi|55670165|pdb|1U47|A Chain A, Cytosine-8-Oxoguanine Base Pair At The Polymerase Active Site gi|55670168|pdb|1U48|A Chain A, Extension Of A Cytosine-8-Oxoguanine Base Pair gi|55670171|pdb|1U49|A Chain A, Adenine-8oxoguanine Mismatch At The Polymerase Active Site gi|55670174|pdb|1U4B|A Chain A, Extension Of An Adenine-8oxoguanine Mismatch gi|55670297|pdb|1UA0|A Chain A, Aminofluorene Dna Adduct At The Pre-Insertion Site Of A Dna Polymerase gi|55670300|pdb|1UA1|A Chain A, Structure Of Aminofluorene Adduct Paired Opposite Cytosine At The Polymerase Active Site Length = 580 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 88/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82 D ++ A + + + L + S F+ V Sbjct: 32 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 85 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ + L+ A + V A KM++ + + Sbjct: 86 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 137 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196 R P+ + R E+ + + EQ L + + G Sbjct: 138 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 196 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + + + + ++Q + L + ++L LF + L + T+ Sbjct: 197 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 255 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + + R + + L++ + D + T+ Sbjct: 256 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 314 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372 ++TGR S QN+P + +R + SE Sbjct: 315 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 349 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 350 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 409 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ A Sbjct: 410 KAVNF--------------GIVYGISDYGLAQ---------------------------- 427 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + V ++ + G Sbjct: 428 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 472 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R D+ + R +Q + DI+ + Sbjct: 473 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 510 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ + ++L VHDE++ E P + L +M + +PLK Sbjct: 511 AMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 568 Query: 666 EGYESKRY 673 + + + Sbjct: 569 DYHYGSTW 576 >gi|310826548|ref|YP_003958905.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612] gi|308738282|gb|ADO35942.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612] Length = 885 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 101/681 (14%), Positives = 195/681 (28%), Gaps = 148/681 (21%) Query: 18 KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL----ENTDVTIVAHNS 73 K + Y ED V + A+ V + V P M L E + V H+ Sbjct: 324 KLTVYAYREDDRVWVAAY-IGG--VYYF--VEKPAMVSAFFSGLGEIPEADSLQTVGHDL 378 Query: 74 YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133 + + ++ T + A + L + M+ + I Sbjct: 379 KNLTHI--YHSQCSVIVNYTFDTYIGAYLLNPSD------QRYDLQTVAMKYLGDTIQSE 430 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQ 183 R + F V + K L E Sbjct: 431 EDFFGRGKTLVRAEDMDSARLAAFMVKNCE---VIHRLEKPLAEKIEADGMTGLFQNIEL 487 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 L + ++ + G+ VD+ L+ + + L E+ L + ++L T L Sbjct: 488 PLLKIMASMEELGFKVDIHQLEELSVEFEKKIETLTSEIYELAEEDDFNINSTKQLGTIL 547 Query: 244 FLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 F + L + T+ +T VL P ++ + R S+ L++ ++ Sbjct: 548 FDKLKLPVVKKTKTGYSTNAEVLDQLVLFHPIIQKIIDYR-MISKLDSTYGKGLIKLVDP 606 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 + + TGR S QN+P + E Sbjct: 607 KTHKIYSTFNQTVTATGRLSSSDPNLQNIPVKTEMGRE---------------------- 644 Query: 361 SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R + S G + LV AD + IE RVLA ++G++ + F +D++ T + FNV Sbjct: 645 ---IRKVFVPSAGDRVLVDADYSQIELRVLAHLSGDENLIDTFVKNQDIHTRTASEIFNV 701 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 V+++QR+ K + L Sbjct: 702 PMDAVSREQRSHAKAINFGLI--------------------------------------- 722 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 + + + + ++ +V E + ++ G Sbjct: 723 -----YGKQAFSLGKDLGITRGEAQSYIDLYFSRYPKVLEYMENIKAEAKE---KGYVTT 774 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 GR ++ + L R Sbjct: 775 IW-----------------------GRRRYITEINSRNRMLVQA---GERMA------LN 802 Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMT 652 +Q + DI+ M+ ++L VHDE++ +T T++ +L M Sbjct: 803 TPIQGAAADIIKIAMIKVYDRLEREGLKSKLILQVHDELIIDTLKTEQETVMKLLVEEME 862 Query: 653 SNPSWAKGLPLKAEGYESKRY 673 + +PL + + + Sbjct: 863 NAVD--LKVPLTVDAHAGDSW 881 >gi|227892837|ref|ZP_04010642.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047] gi|227865339|gb|EEJ72760.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047] Length = 886 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 101/675 (14%), Positives = 206/675 (30%), Gaps = 139/675 (20%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73 L G + D + F+ +D D + + LK LE+ + N Sbjct: 330 LAMLGANYHLADF--VGFSLKINDQ----IYVSKDVELLEEDNLKHLLEDEKIKK---NV 380 Query: 74 YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 F+ V + + L+ + + +GE L K + Sbjct: 381 -FDLKRTTVGLHRLGIHAHGLDY-DMLLASYLVNNENNSNDLGEIAHL--YGDYSVKTDM 436 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190 + KG++ D NH + E K + + ++ + + E + Sbjct: 437 EVYGKGKSEHIPDDDILFNHLASKVNAIEKLKEPLLKKLKEHEQDDLFDTIEIPTARVLA 496 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G V+ + L V+ +L+ ++ + ++L LF + GL Sbjct: 497 KMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYEQAG-ERFNLNSPKQLGHILFEKLGLP 555 Query: 251 LEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 + T+ +T VL K +P ++ + R ++ + L++ + DGR+ Sbjct: 556 VLKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHTR 614 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 + TGR S QN+P + + +R Sbjct: 615 YLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRKA 648 Query: 368 VIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVT 425 + + D + +E RVLA ++G+ +AF+TG D++ T + F++ P QVT Sbjct: 649 FVPSEPDGYIFSCDYSQVELRVLAHVSGDAHMQEAFKTGYDIHSHTAMKIFHLDSPDQVT 708 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 R K + G++ + Sbjct: 709 PLMRRHAKAVNF--------------GIVYGISDYGLSK--------------------- 733 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + +++ ++ + N +A ++ + G A Sbjct: 734 ---------NLGISRKRAKEFIDNYFEQYPQIKDYMN---KAVQEARDKGYAETIMH--- 778 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 R D+ + T R +Q Sbjct: 779 --------------------RRRYLPDIHAKK---YTVRAFAERTAINSP------IQGS 809 Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + DI+ M+N K +V+ VHDE++ + P + + +M S Sbjct: 810 AADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK-- 867 Query: 659 KGLPLKAEGYESKRY 673 +PL A+ + Sbjct: 868 LDVPLIADSGWGHNW 882 >gi|253578996|ref|ZP_04856267.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849939|gb|EES77898.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 849 Score = 307 bits (786), Expect = 5e-81, Method: Composition-based stats. Identities = 94/717 (13%), Positives = 196/717 (27%), Gaps = 184/717 (25%) Query: 17 TKCGICKYAEDVCVILFAFGFDDHPVELWDCV----------------------HDPVM- 53 G+ E+ V ++ + + + Sbjct: 253 KTAGVSLVTENGRVFGAGLALNEEEIYYIPVEGMITEGYLCGKLEGLLHKVSESNTENIM 312 Query: 54 ---PQVLKEALENT--DVTIVAHN----SYFERTV--------LKACFNLDIPIHRWICT 96 +K+ EN DV N +++ L D Sbjct: 313 KSNTDDVKKDPENEISDV-----NTDGTLKYDKKCVCALDVKALLKHIKSD-DPMAVFDA 366 Query: 97 LVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 V A + + L+ + + +EL+ + ++ E Sbjct: 367 GVAAYLLNPLKSSYTYDDMAKEY-LNGRILPAREELL--------GKKTVEKAWEESAEG 417 Query: 154 WRLFGEYCKGDVTVTRE-----IFKRLEPLSSKEQELWYL--DQTINDRGYCVDVALAHT 206 + Y R+ + + EL + ++ G V + Sbjct: 418 LAAWACYMAYTALACRKPMCEALRDTGMWNVYTQIELPLIFTLDSMEKWGISVKSEELKS 477 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263 + + V +L++++ + +++ LF + GL T+ +T +L Sbjct: 478 YGEKLSVRIGELEKQIWQQAG-EEFNINSPKQMGVILFEKLGLKGGKKTKTGYSTAADIL 536 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 P + R ++ + LV + DGR+ T + TGR S Sbjct: 537 EKLAPEYPIVKDILEYRQ-LAKLKSTYADGLVGEIAEDGRIHSTFNQ-TITATGRISSTE 594 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+P +R + EG + AD + Sbjct: 595 PNLQNIPVRMELGR-------------------------LIRKVFVPEEGYVFLDADYSQ 629 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA M+G++ ++A++ +D++ T + F+V +VT QR K + + Y Sbjct: 630 IELRVLAHMSGDEKLIQAYKEAQDIHRHTASEVFHVPFDEVTDLQRRNAKAVNFGIVYG- 688 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + L+ Sbjct: 689 ----ISSFGLSQDLS---------------------------------------ITRKEA 705 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + + ++ + L E+ E G Sbjct: 706 AEYIERYFETYPKIKGFLDGL---VEEGKEKGYVTTM----------------------- 739 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620 GR ++ + + R +Q + DI+ M + Sbjct: 740 FGRRRPIPELKSGNFMQRSF---GERVAMNSP------IQGTAADIIKIAMNRVYRRLKD 790 Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +VL VHDE++ ET + ++L M + L+ + ++ + Sbjct: 791 ENLKSRLVLQVHDELLIETCKEEIPQVSAILEEEMKGAAK--LSVELEVDMHQGNNW 845 >gi|294617839|ref|ZP_06697450.1| DNA polymerase type I [Enterococcus faecium E1679] gi|291595912|gb|EFF27194.1| DNA polymerase type I [Enterococcus faecium E1679] Length = 881 Score = 307 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 86/665 (12%), Positives = 189/665 (28%), Gaps = 142/665 (21%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86 ++ A+G + +D + + + + +++ L Sbjct: 335 EIVGVAWGTEKK----IYVTNDLSVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTG- 389 Query: 87 DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 L+ A ++ + + + +E + L Sbjct: 390 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------AVYGKGAKKGL 441 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200 + + R +++E+ + + ++ EL + + G VD Sbjct: 442 PEEEELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISGIKVD 501 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + +++Q++ + ++L LF + GL + T+ + Sbjct: 502 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 560 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL ++ P + R ++ + L++ + SDG++ ++TG Sbjct: 561 TAVDVLEQLREQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQSDGKVHTRYVQA-LTQTG 618 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376 R S QN+P + +R + E + Sbjct: 619 RLSSVDPNLQNIPIRLDEGRK-------------------------IRQAFVPREKDWLI 653 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVM 435 +D + IE RVLA ++ ++ AF G+D++ +T R F + VT + R K + Sbjct: 654 YSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAV 713 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ + Sbjct: 714 N--------------FGIVYGISDYGLSQ------------------------------N 729 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 A ++ + +K+ V E + + + Sbjct: 730 LGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKD------------------------- 764 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + R D+ + R +Q + DIL M+ Sbjct: 765 -QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINTP------IQGSAADILKIAMI 814 Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 K ++L VHDE+V E P+ + + L +M S +PL + Sbjct: 815 ELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSS 872 Query: 669 ESKRY 673 K + Sbjct: 873 WGKTW 877 >gi|291535124|emb|CBL08236.1| DNA polymerase I [Roseburia intestinalis M50/1] Length = 926 Score = 307 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 86/676 (12%), Positives = 192/676 (28%), Gaps = 158/676 (23%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMP-QVLKEALENTDVTIVAHNSYF---ERT------ 78 + A + +P + + ++ + + + Sbjct: 374 YCLGAAISTGEEETFFI--KAGENLPAKQILSMFTASEA------ASYATLDLKPQLAAL 425 Query: 79 -VLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALK---LSSQKMEEGKELIA 131 +L+ N +I + ++ A + + + + S+ GK I Sbjct: 426 GLLERQVNGNIGLSNLFDGVLAAYLLNPLKNEYPYEDIAKDYMGQMIPSKADLLGKLTIE 485 Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE--IFKRLEPLSSKEQELWYL- 188 + K + P + + Y T E + + E E+ + Sbjct: 486 QAMK----------DAPEAFLNYVCYMAYVAQASKKTLETDLKEEGMDHLFTEIEMPLVF 535 Query: 189 -DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + G + V +L++++ + ++L LF + Sbjct: 536 TLADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEAG-EEFNINSPKQLGVILFEKL 594 Query: 248 GLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 + T+ +T VL P + R ++ + LV + DGR+ Sbjct: 595 SMPYGKKTKTGYSTAADVLDRLAPEYPIVSDILEYRQ-LTKLKSTYADGLVNYIAKDGRI 653 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 + + TGR S QN+P + Sbjct: 654 HTSFNQ-TITATGRLSSTEPNLQNIPMRIELGR-------------------------LI 687 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R + EG + + AD + IE RVLA M+G++ ++A+ +D++ T ++ F++ +V Sbjct: 688 RKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEV 747 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T QR K + + Y + L+ Sbjct: 748 TDLQRRNAKAVNFGIVYG-----ISSFGLSQDLS-------------------------- 776 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + + + ++ + L ++ Sbjct: 777 -------------ISKKEAAEYIERYFETYPKIKTFLDGLVAEAKE-------------- 809 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 + GR ++ ++ + R +Q Sbjct: 810 ------------KGYVTTMFGRRRPVPELSSSNFMQRSF---GERVAMNSP------IQG 848 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSW 657 + DI+ M+ ++LTVHDE++ ET +E + M Sbjct: 849 TAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRKILEEEMHGAADL 908 Query: 658 AKGLPLKAEGYESKRY 673 A + L+ + + K + Sbjct: 909 A--VTLEIDAHVGKNW 922 >gi|29726371|pdb|1L3S|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 9 Base Pairs Of Duplex Dna. gi|29726374|pdb|1L3T|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 10 Base Pairs Of Duplex Dna Following Addition Of A Single Dttp Residue gi|29726377|pdb|1L3U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 11 Base Pairs Of Duplex Dna Following Addition Of A Dttp And A Datp Residue. gi|29726380|pdb|1L3V|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 15 Base Pairs Of Duplex Dna Following Addition Of Dttp, Datp, Dctp, And Dgtp Residues. gi|29726383|pdb|1L5U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 12 Base Pairs Of Duplex Dna Following Addition Of A Dttp, A Datp, And A Dctp Residue. gi|47168372|pdb|1NJW|A Chain A, Guanine-Thymine Mismatch At The Polymerase Active Site gi|47168375|pdb|1NJX|A Chain A, Thymine-Guanine Mismatch At The Polymerase Active Site gi|47168378|pdb|1NJY|A Chain A, Thymine-Thymine Mismatch At The Polymerase Active Site gi|47168381|pdb|1NJZ|A Chain A, Cytosine-Thymine Mismatch At The Polymerase Active Site gi|47168384|pdb|1NK0|A Chain A, Adenine-Guanine Mismatch At The Polymerase Active Site gi|47168387|pdb|1NK4|A Chain A, Guanine-Guanine Mismatch At The Polymerase Active Site gi|47168390|pdb|1NK5|A Chain A, Adenine-Adenine Mismatch At The Polymerase Active Site gi|47168393|pdb|1NK6|A Chain A, Cytosine-Cytosine Mismatch At The Polymerase Active Site gi|47168396|pdb|1NK7|A Chain A, Guanine-Adenine Mismatch At The Polymerase Active Site gi|47168399|pdb|1NK8|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After A Single Round Of Primer Extension, Following Incorporation Of Dctp. gi|47168402|pdb|1NK9|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Two Rounds Of Primer Extension, Following Incorporation Of Dctp And Dgtp. gi|47168405|pdb|1NKB|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Three Rounds Of Primer Extension, Following Incorporation Of Dctp, Dgtp, And Dttp. gi|47168408|pdb|1NKC|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Five Rounds Of Primer Extension, Following Incorporation Of Dctp, Dgtp, Dttp, And Datp. gi|47168411|pdb|1NKE|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Cytosine-Thymine Mismatch After A Single Round Of Primer Extension, Following Incorporation Of Dctp. gi|58177300|pdb|1XC9|A Chain A, Structure Of A High-Fidelity Polymerase Bound To A Benzo[a]pyrene Adduct That Blocks Replication gi|157834270|pdb|1XWL|A Chain A, Bacillus Stearothermophilus (Newly Identified Strain As Yet Unnamed) Dna Polymerase Fragment Length = 580 Score = 307 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 88/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82 D ++ A + + + L + S F+ V Sbjct: 32 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 85 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ + L+ A + V A KM++ + + Sbjct: 86 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 137 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196 R P+ + R E+ + + EQ L + + G Sbjct: 138 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 196 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + + + + ++Q + L + ++L LF + L + T+ Sbjct: 197 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 255 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + + R + + L++ + D + T+ Sbjct: 256 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 314 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372 ++TGR S QN+P + +R + SE Sbjct: 315 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 349 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 350 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 409 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ A Sbjct: 410 KAVNF--------------GIVYGISDYGLAQ---------------------------- 427 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + V ++ + G Sbjct: 428 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 472 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R D+ + R +Q + DI+ + Sbjct: 473 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 510 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ + ++L VHDE++ E P + L +M + +PLK Sbjct: 511 AMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 568 Query: 666 EGYESKRY 673 + + + Sbjct: 569 DYHYGSTW 576 >gi|232010|sp|P30313|DPO1F_THETH RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tfl polymerase 1 gi|281488|pir||S26675 DNA-directed DNA polymerase (EC 2.7.7.7) I - Thermus aquaticus gi|48166|emb|CAA46900.1| DNA-directed DNA polymerase [Thermus thermophilus] Length = 831 Score = 307 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 99/610 (16%), Positives = 182/610 (29%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + VL LD+ ++LA + + V Sbjct: 354 DLAVLALREGLDLFPE--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 394 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 + + + K + + E E+ L + + Sbjct: 395 ------GEWTEDAGERALLAERLFQTLKERLKGEERLLWLYE---EVEKPLSRVLARMEA 445 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250 G +DVA L+ V+ E +L++E+ L + ++L+ LF E GL Sbjct: 446 TGVRLDVAYLQALSLEVEAEVRQLEEEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 504 Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 E + +T VL + ++ P ++ R ++ ++ L ++ GRL Sbjct: 505 TEKTGKRSTSAAVLEALREAHPIVDRILQYR-ELTKLKNTYIDPLPALVHPKTGRLHTRF 563 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 564 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 597 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 +A EG LVV D + IE RVLA ++G++ ++ F+ G D++ T + F V+P V Sbjct: 598 VAEEGWVLVVLDYSQIELRVLAHLSGDENLIRVFQEGRDIHTQTASWMFGVSPEGVDPLM 657 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 658 RRAAKTINF--------------GVLYGMS------------------------------ 673 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + Q + +V + E+ G Sbjct: 674 AHRLSGELSIPYEEAVAFIERYFQSYPKVRAW---IEGTLEEGRRRGYVETL-------- 722 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 723 ---------------FGRRRYVPDLNAR---VKSVREAAERMAFNMP------VQGTAAD 758 Query: 609 ILAEGMMNA----TKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE+V E P + L +M W +PL Sbjct: 759 LMKLAMVRLFPRLQELGARMLLQVHDELVLEAPKDRAERVAALAKEVMEGV--WPLQVPL 816 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 817 EVEVGLGEDW 826 >gi|322434369|ref|YP_004216581.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9] gi|321162096|gb|ADW67801.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9] Length = 975 Score = 307 bits (785), Expect = 6e-81, Method: Composition-based stats. Identities = 94/654 (14%), Positives = 194/654 (29%), Gaps = 148/654 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAV--- 112 L++ALE+ + H+ VL+A I + ++L+ + Sbjct: 431 LRDALEDAALPKDLHDLK---AVLRALEPHGITLAGVRDDVMLLSYLVNPTHGSHTLPDV 487 Query: 113 -GEALK--------------LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 L + + K L P A Sbjct: 488 VARFTNRALTPVVKGVVSPTLLPESANAIHRVAPILRKQVEEAGLVVHEIPKDDPALGGA 547 Query: 158 GEYC-----KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 + V + ++ + + L + + + G +D A+ + ++ + Sbjct: 548 VTHEMLFPPAAAPVVGKADGPLVKVYETIDLPLVPVLLRMEEAGVRIDPAVLNEMSSRLA 607 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL---TE--TTCQRVLSSNK 267 VE L +++ + + + ++L LF + L + +T Q VL Sbjct: 608 VEIDNLAEKIYADSGHR-FNINSPKQLGDVLFNKMDLPKPMKYGKGKVVSTAQDVLEELA 666 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P A V +R + L+ L + +GR+ T +G + TGR S Q Sbjct: 667 ENHPIAALVIEHRQ-LQKLKSTYLDQLPSLSDREGRIHTTFNQVG-TATGRLSSTNPNLQ 724 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + E +R+ IA+ G L+ AD + IE R Sbjct: 725 NIPTRTAIGRE-------------------------IRAAFIAAPGNLLMSADYSQIELR 759 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A + + L A+ TG+D++ T A F V + K+ RA K + + Y Sbjct: 760 LMAHFSQDPLLLNAYRTGQDIHTLTAAEVFGVDAETMDKETRARAKAVNFGIVY------ 813 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A + + Sbjct: 814 --------GISPFGLAAQLGIDQ------------------------------KVARTYI 835 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + ++ + +E + + GR Sbjct: 836 ETYYDRYKGIKRFIDETLETVRLA--------------------------GAVSTHFGRV 869 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 D+ + + R Q + D++ M++ + Sbjct: 870 RPIPDIQSRNPNMRGF---AERTAINTPL------QGTAADLIKLAMISLDREIRARGLK 920 Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 + L VHDE++ + ++ L M + + +P+ A+ +R Sbjct: 921 SRMTLQVHDELLFDVVPSEAEEMQTLVQHEMENVAEF--SIPIVADIGLGDNWR 972 >gi|69246664|ref|ZP_00604054.1| DNA polymerase A [Enterococcus faecium DO] gi|68195138|gb|EAN09596.1| DNA polymerase A [Enterococcus faecium DO] Length = 868 Score = 307 bits (785), Expect = 6e-81, Method: Composition-based stats. Identities = 86/665 (12%), Positives = 190/665 (28%), Gaps = 142/665 (21%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86 ++ A+G + +D + + + + +++ L Sbjct: 322 EIVGVAWGTEKK----IYVTNDLSVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTG- 376 Query: 87 DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 L+ A ++ + + + +E + L Sbjct: 377 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------AVYGKGAKKGL 428 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200 + + R +++E+ ++ + ++ EL + + G VD Sbjct: 429 PEEEELFFAHLARKVAAINALTPKLSQELAEKNQEDLFRKMELPLSIILAEMEISGIKVD 488 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + +++Q++ + ++L LF + GL + T+ + Sbjct: 489 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 547 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL ++ P + R ++ + L++ + SDG++ ++TG Sbjct: 548 TAVDVLEQLREQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQSDGKVHTRYVQ-TLTQTG 605 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376 R S QN+P + +R + E + Sbjct: 606 RLSSVDPNLQNIPIRLDEGRK-------------------------IRQAFVPREKDWLI 640 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVM 435 +D + IE RVLA ++ ++ AF G+D++ +T R F + VT + R K + Sbjct: 641 YSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAV 700 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ + Sbjct: 701 N--------------FGIVYGISDYGLSQ------------------------------N 716 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 A ++ + +K+ V E + + + Sbjct: 717 LGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKD------------------------- 751 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + R D+ + R +Q + DIL M+ Sbjct: 752 -QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINTP------IQGSAADILKIAMI 801 Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 K ++L VHDE+V E P+ + + L +M S +PL + Sbjct: 802 ELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSS 859 Query: 669 ESKRY 673 K + Sbjct: 860 WGKTW 864 >gi|167629830|ref|YP_001680329.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] gi|167592570|gb|ABZ84318.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] Length = 939 Score = 307 bits (785), Expect = 6e-81, Method: Composition-based stats. Identities = 85/632 (13%), Positives = 172/632 (27%), Gaps = 138/632 (21%) Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 K + D + ++ +L + I L+ A + ++ + Sbjct: 429 KPFWASKDHRKLFFDAK-SLWLLARREDTVIEGID-GDGLLGAYLLDPLANRYSLARSA- 485 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + E E GE +++ Sbjct: 486 HDWIGWKVDTEAGRSVLPPEEGARAAAALFHMTPVMEARLGE------EGLCALYR---- 535 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E L + + G V+ A+ + + + +L ++ L + + Sbjct: 536 --DVELPLAPILGAMEWTGIKVNPAVLQEMAGELGADIRRLQADIYDLAG-ESFNINSTQ 592 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 + LF + GL + T+ +T VL P +V R + + L Sbjct: 593 QFGKILFEKLGLPVIKRTKTGYSTDVEVLEELADRHPIVPKVLEYRQ-LMKLKSTYVEGL 651 Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 + ++ DGR+ + + TGR S QN+P Sbjct: 652 LPLIDGEDGRIHTSFNQAV-TATGRLSSTEPNLQNIPVRLEQGRR--------------- 695 Query: 354 PDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R A + L+ AD + IE R+LA ++G+ AF +D++ T Sbjct: 696 ----------IRKAFTAPGDDWTLLAADYSQIELRILAHLSGDPSFKDAFAKNQDIHTRT 745 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 + F V VT + R K + + Y + L + + Sbjct: 746 ASEVFGVPMENVTSEMRRRAKAVNFGIVYGIS-----DFGLSRDLGVLRAEARQYIDGYF 800 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 + + + + + Sbjct: 801 DRYSGVKGYIDEIIAEARRQGYVTTL---------------------------------- 826 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 +RR +P +++K R+ +NT Sbjct: 827 -------LGRRRRLPDLFVKNKIRQNF---------------GERAAMNTP--------- 855 Query: 593 YGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDE-FNAS 645 +Q + DI+ M+ ++L VHDE++ E P + A+ Sbjct: 856 ---------IQGTAADIIKAAMVRIPGLLAAKGLKTRMLLQVHDELIFEAPKEELSEAAA 906 Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRY--RK 675 ++ M +PL + + K Sbjct: 907 LIRETMEQTIR--LDVPLTVDVKTGPNWYEMK 936 >gi|210077513|gb|ACJ07021.1| PolI [Thermus sp. Wai28.A1] Length = 833 Score = 307 bits (785), Expect = 6e-81, Method: Composition-based stats. Identities = 98/610 (16%), Positives = 189/610 (30%), Gaps = 151/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + VL + + L++A + + V + + L++ Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTNPEGVARRYGGEFTEDAAERALLSERL 414 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 L ++ +++ E+ L + + Sbjct: 415 FQTLFPRLSEKL----------------------LWLYQ------EVERPLSRVLAHMEA 446 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--- 251 RG +DV L L+ ++ E +L+ E+ L + ++L+ LF E GL Sbjct: 447 RGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHP-FNLNSRDQLEKVLFDELGLTPVGR 505 Query: 252 -EDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 E + +T Q L + + P + R S+ L+ L ++ GRL Sbjct: 506 TEKTGKRSTAQGALEALRGAHPIVELILQYR-ELSKLKSTYLDPLPRLVHPRTGRLHTRF 564 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 565 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRKAF 598 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 +A EG L+ AD + IE RVLA ++G++ + F G+D++ T A F + PA V Sbjct: 599 VAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKM 658 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ + + + + Sbjct: 659 RRAAKTVNF--------------GVLYGMSAHRLSQELGID------------------- 685 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 E + + Q +V + + E+ G Sbjct: 686 -----------YKEAEAFIERYFQSFPKVRAW---IERTLEEGRTRGYVETL-------- 723 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + + R VQ + D Sbjct: 724 ---------------FGRRRYVPDLASR---VRSVREAAERMAFNMP------VQGTAAD 759 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPL 663 ++ M+ G ++L VHDE+V E P+ E +++ +M + + +PL Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENA--YPLDVPL 817 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 818 EVEVGVGRDW 827 >gi|291539651|emb|CBL12762.1| DNA polymerase I [Roseburia intestinalis XB6B4] Length = 930 Score = 306 bits (784), Expect = 6e-81, Method: Composition-based stats. Identities = 86/676 (12%), Positives = 192/676 (28%), Gaps = 158/676 (23%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMP-QVLKEALENTDVTIVAHNSYF---ERT------ 78 + A + +P + + ++ + + + Sbjct: 378 YCLGAAISTGEEETFFI--KAGENLPAKQILSMFTASEA------ASYATLDLKPQLAAL 429 Query: 79 -VLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALK---LSSQKMEEGKELIA 131 +L+ N +I + ++ A + + + + S+ GK I Sbjct: 430 GLLERQVNGNIGLSNLFDGVLAAYLLNPLKNEYPYEDIAKDYMGQMIPSKADLLGKLTIE 489 Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE--IFKRLEPLSSKEQELWYL- 188 + K + P + + Y T E + + E E+ + Sbjct: 490 QAMK----------DAPEAFLNYVCYMAYVAQASKKTLETDLKEEGMDHLFTEIEMPLVF 539 Query: 189 -DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + G + V +L++++ + ++L LF + Sbjct: 540 TLADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEAG-EEFNINSPKQLGVILFEKL 598 Query: 248 GLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 + T+ +T VL P + R ++ + LV + DGR+ Sbjct: 599 SMPYGKKTKTGYSTAADVLDRLAPEYPIVSDILEYRQ-LTKLKSTYADGLVNYIAKDGRI 657 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 + + TGR S QN+P + Sbjct: 658 HTSFNQ-TITATGRLSSTEPNLQNIPMRIELGR-------------------------LI 691 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R + EG + + AD + IE RVLA M+G++ ++A+ +D++ T ++ F++ +V Sbjct: 692 RKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEV 751 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T QR K + + Y + L+ Sbjct: 752 TDLQRRNAKAVNFGIVYG-----ISSFGLSQDLS-------------------------- 780 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + + + ++ + L ++ Sbjct: 781 -------------ISKKEAAEYIERYFETYPKIKTFLDGLVAEAKE-------------- 813 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 + GR ++ ++ + R +Q Sbjct: 814 ------------KGYVTTMFGRRRPVPELSSSNFMQRSF---GERVAMNSP------IQG 852 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSW 657 + DI+ M+ ++LTVHDE++ ET +E + M Sbjct: 853 TAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRKILEEEMHGAADL 912 Query: 658 AKGLPLKAEGYESKRY 673 A + L+ + + K + Sbjct: 913 A--VTLEIDAHVGKNW 926 >gi|122920392|pdb|2HHQ|A Chain A, O6-Methyl-Guanine:t Pair In The Polymerase-10 Basepair Position gi|122920396|pdb|2HHS|A Chain A, O6-Methyl:c Pair In The Polymerase-10 Basepair Position gi|122920400|pdb|2HHT|A Chain A, C:o6-Methyl-Guanine Pair In The Polymerase-2 Basepair Position gi|122920414|pdb|2HHU|A Chain A, C:o6-Methyl-Guanine In The Polymerase Postinsertion Site (- 1 Basepair Position) gi|122920417|pdb|2HHV|A Chain A, T:o6-Methyl-Guanine In The Polymerase-2 Basepair Position gi|122920428|pdb|2HHX|A Chain A, O6-Methyl-Guanine In The Polymerase Template Preinsertion Site gi|122920472|pdb|2HW3|A Chain A, T:o6-Methyl-Guanine Pair In The Polymerase Postinsertion Site (-1 Basepair Position) Length = 580 Score = 306 bits (784), Expect = 6e-81, Method: Composition-based stats. Identities = 88/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82 D ++ A + + + L + S F+ V Sbjct: 32 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 85 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ + L+ A + V A KM++ + + Sbjct: 86 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 137 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196 R P+ + R E+ + + EQ L + + G Sbjct: 138 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 196 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + + + + ++Q + L + ++L LF + L + T+ Sbjct: 197 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 255 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + + R + + L++ + D + T+ Sbjct: 256 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 314 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372 ++TGR S QN+P + +R + SE Sbjct: 315 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 349 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 350 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 409 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ A Sbjct: 410 KAVNF--------------GIVYGISDYGLAQ---------------------------- 427 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + V ++ + G Sbjct: 428 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 472 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R D+ + R +Q + DI+ + Sbjct: 473 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 510 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ + ++L VHDE++ E P + L +M + +PLK Sbjct: 511 AMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 568 Query: 666 EGYESKRY 673 + + + Sbjct: 569 DYHYGSTW 576 >gi|331701576|ref|YP_004398535.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929] gi|329128919|gb|AEB73472.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929] Length = 884 Score = 306 bits (784), Expect = 7e-81, Method: Composition-based stats. Identities = 108/666 (16%), Positives = 198/666 (29%), Gaps = 149/666 (22%) Query: 32 LFAFGFDDHPVELWDCVHDPVMP--QVLKEALENTDVTIVAHNSYFERTVLKACFNL--- 86 L F +DP + Q + + L + + N F+ + L Sbjct: 340 LVGFAIGQGNKWYV--TNDPELLHNQHVSDLLTSKTIKK---NL-FDAK--RTYVGLYRQ 391 Query: 87 DIPIHRW-ICTLVLARSNGLPSALKAVGEA------LKLSSQKMEEGKELIARFC--KGE 137 I + L+++ + VG + + + GK Sbjct: 392 GIELANVDFDMLLVSYLLNTTNNSNDVGTVAHLHGFYNVKTDEEVYGKGAKRHIDPQSPA 451 Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197 L + K +F + D +++ E ++ ++ + G Sbjct: 452 FLAHLVHKVKAIDALHDGMFKD---LDAHNQSKLYW------DIEIKIAFVLAHMEINGI 502 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE- 256 VD A + +++Q + + ++L LF + L + T+ Sbjct: 503 KVDAATLEGMGSKFKERLAEIEQTIFQEAG-EEFNIGSPKQLGKILFEKLRLPILKKTKT 561 Query: 257 --TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 +T VL P V + R S+ ++ L++ ++ D T + Sbjct: 562 GYSTSVDVLEKLAPDAPIVQNVLDYRQ-ISKLQSTYVDGLLKVIHPDDSKVHTRYLQTLT 620 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EG 373 +TGR S QN+P S +R I S G Sbjct: 621 QTGRLSSVDPNLQNIPVRSEEGR-------------------------LIRQAFIPSHPG 655 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIG 432 ++ +D + IE RVLA + +Q AF+ GED++ TT R F + +VT + R Sbjct: 656 WQIFSSDYSQIELRVLASITDDQNMQDAFKNGEDIHATTARRIFGLPSNEEVTPELRRQA 715 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y + + EE+ + + + E H Sbjct: 716 KAVNFGIVYGIS-----DFGLASNTGITRKQAHQFIERYFEEYPGVKKYTEDIVEFARNH 770 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + A +RR +P + K Sbjct: 771 RYVETI-----------------------------------------AHRRRYLPDINSK 789 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R+ +NT +Q + DI+ Sbjct: 790 SFNLRSF---------------AERTAMNT------------------PIQGSAADIIKI 816 Query: 613 GMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667 M+N A ++L VHDE++ E PD + L +M S +PLK E Sbjct: 817 AMINMADAIKDMKTRMLLQVHDELIFEVPDEELDTVKQLIPSVMDSAIH--LNVPLKVES 874 Query: 668 YESKRY 673 + K + Sbjct: 875 HWGKTW 880 >gi|257414061|ref|ZP_04745123.2| DNA polymerase I [Roseburia intestinalis L1-82] gi|257201332|gb|EEU99616.1| DNA polymerase I [Roseburia intestinalis L1-82] Length = 930 Score = 306 bits (784), Expect = 7e-81, Method: Composition-based stats. Identities = 86/675 (12%), Positives = 192/675 (28%), Gaps = 158/675 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMP-QVLKEALENTDVTIVAHNSYF---ERT------- 78 + A + +P + + ++ + + + Sbjct: 379 CLGAAISTGEEETFFI--KAGENLPAKQILSMFTASEA------ASYATLDLKPQLAALG 430 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALK---LSSQKMEEGKELIAR 132 +L+ N +I + ++ A + + + + S+ GK I + Sbjct: 431 LLERQVNGNIGLSNLFDGVLAAYLLNPLKNEYPYEDIAKDYMGQMIPSKADLLGKLTIEQ 490 Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE--IFKRLEPLSSKEQELWYL-- 188 K + P + + Y T E + + E E+ + Sbjct: 491 AMK----------DAPEAFLNYVCYMAYVAQASKKTLETDLKEEGMDHLFTEIEMPLVFT 540 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + + G + V +L++++ + ++L LF + Sbjct: 541 LADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEAG-EEFNINSPKQLGVILFEKLS 599 Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 + T+ +T VL P + R ++ + LV + DGR+ Sbjct: 600 MPYGKKTKTGYSTAADVLDRLAPEYPIVSDILEYRQ-LTKLKSTYADGLVNYIAKDGRIH 658 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 + + TGR S QN+P +R Sbjct: 659 TSFNQ-TITATGRLSSTEPNLQNIPMRIELGR-------------------------LIR 692 Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + EG + + AD + IE RVLA M+G++ ++A+ +D++ T ++ F++ +VT Sbjct: 693 KAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVT 752 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 QR K + + Y + L+ Sbjct: 753 DLQRRNAKAVNFGIVYG-----ISSFGLSQDLS--------------------------- 780 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + + + ++ + L ++ Sbjct: 781 ------------ISKKEAAEYIERYFETYPKIKTFLDGLVAEAKE--------------- 813 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 + GR ++ ++ + R +Q Sbjct: 814 -----------KGYVTTMFGRRRPVPELSSSNFMQRSF---GERVAMNSP------IQGT 853 Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWA 658 + DI+ M+ ++LTVHDE++ ET +E + M A Sbjct: 854 AADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRKILEEEMHGAADLA 913 Query: 659 KGLPLKAEGYESKRY 673 + L+ + + K + Sbjct: 914 --VTLEIDAHVGKNW 926 >gi|327184034|gb|AEA32481.1| DNA polymerase I [Lactobacillus amylovorus GRL 1118] Length = 886 Score = 306 bits (784), Expect = 8e-81, Method: Composition-based stats. Identities = 98/676 (14%), Positives = 207/676 (30%), Gaps = 140/676 (20%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73 L G + + F+ +D D + + +K LE+ + N Sbjct: 329 LEMLGANYHLAPF--VGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV 379 Query: 74 YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 F+ V + + L+ + + +GE L K + Sbjct: 380 -FDLKRTMVAAHRLGIHTHGLDY-DMLLASYLINNENNSNDLGEIAHL--YGDYSVKTDL 435 Query: 131 ARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189 + KG++ D ++ + A + E K ++ + ++ + E + Sbjct: 436 EVYGKGKSEHIPDDDDELFNHLASKVNAIEKLKRELLKKLKEHEQDALFDTIEIPTACVL 495 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G V+ + L V+ +L+ ++ + ++L LF + GL Sbjct: 496 ARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYGQAG-EKFNLNSPKQLGHILFEKLGL 554 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T+ +T VL K +P ++ + R ++ + L++ + DGR+ Sbjct: 555 PVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHT 613 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 + TGR S QN+P + + +R Sbjct: 614 RYLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRK 647 Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424 + + D + +E RVLA ++G+Q +AF+TG D++ T + F++ P QV Sbjct: 648 AFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQV 707 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T R K + G++ + Sbjct: 708 TPLMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 733 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + +++ ++ + +A ++ + G A Sbjct: 734 ----------NLGISRKRAQEFIDNYFEQYPQIKDYM---DKAVQEARDKGYAETIMH-- 778 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 R D+ + T R +Q Sbjct: 779 ---------------------RRRYLPDIHAKK---YTVRAFAERTAINSP------IQG 808 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657 + DI+ M+N K +V+ VHDE++ + P + + +M S Sbjct: 809 SAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK- 867 Query: 658 AKGLPLKAEGYESKRY 673 +PL A+ + Sbjct: 868 -LDVPLIADSGWGHNW 882 >gi|210077509|gb|ACJ07019.1| PolI [Thermus sp. Tp10.A2] Length = 833 Score = 306 bits (784), Expect = 8e-81, Method: Composition-based stats. Identities = 100/610 (16%), Positives = 189/610 (30%), Gaps = 151/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + VL + + L++A + + V + + L++ Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTNPEGVARRYGGEFTEDAAERALLSE-- 412 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 RLF +++ E+ L + + Sbjct: 413 --------------------RLFQNLFPRLSEKLLWLYQ------EVERPLSRVLAHMEA 446 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--- 251 RG +DV L L+ ++ E +L+ E+ L + ++L+ LF E GL Sbjct: 447 RGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHP-FNLNSRDQLERVLFDELGLTPVGR 505 Query: 252 -EDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 E + +T Q L + + P + R S+ L+ L ++ GRL Sbjct: 506 TEKTGKRSTAQGALEALRGAHPIVELILQYR-ELSKLKSTYLDPLPRLVHPRTGRLHTRF 564 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 565 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRKAF 598 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 +A EG L+ AD + IE RVLA ++G++ + F G+D++ T A F + PA V Sbjct: 599 VAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKM 658 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ + + + + Sbjct: 659 RRAAKTVNF--------------GVLYGMSAHRLSQELGID------------------- 685 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 E + + Q +V + + E+ G Sbjct: 686 -----------YKEAEAFIERYFQSFPKVRAW---IERTLEEGRTRGYVETL-------- 723 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + + R VQ + D Sbjct: 724 ---------------FGRRRYVPDLASR---VRSVREAAERMAFNMP------VQGTAAD 759 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPL 663 ++ M+ G ++L VHDE+V E P+ E +++ +M + + +PL Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENA--YPLDVPL 817 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 818 EVEVGVGRDW 827 >gi|55981023|ref|YP_144320.1| DNA polymerase I [Thermus thermophilus HB8] gi|62298349|sp|P52028|DPO1T_THET8 RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tth polymerase 1 gi|55772436|dbj|BAD70877.1| DNA polymerase I [Thermus thermophilus HB8] Length = 834 Score = 306 bits (784), Expect = 8e-81, Method: Composition-based stats. Identities = 96/610 (15%), Positives = 183/610 (30%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + VL + LD+ ++LA + + V + + L++ Sbjct: 357 DLAVLASREGLDLVPG--DDPMLLAYLLDPSNTTPEGVARRYGGEWTEDAAHRALLSERL 414 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 RN E ++ +E S + + Sbjct: 415 H---------RNLLKRLEGEEKL-----------LWLYHEVEKPLS------RVLAHMEA 448 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-LED 253 G +DVA L+ + E +L++E+ L + ++L+ LF E L L Sbjct: 449 TGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHP-FNLNSRDQLERVLFDELRLPALGK 507 Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 + +T VL + ++ P ++ +R ++ ++ L ++ GRL Sbjct: 508 TQKTGKRSTSAAVLEALREAHPIVEKILQHR-ELTKLKNTYVDPLPSLVHPRTGRLHTRF 566 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 567 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 600 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 +A G LV D + IE RVLA ++G++ ++ F+ G+D++ T + F V P V Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 661 RRAAKTVNF--------------GVLYGMS------------------------------ 676 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + Q +V + + E+ + G Sbjct: 677 AHRLSQELAIPYEEAVAFIERYFQSFPKVRAW---IEKTLEEGRKRGYVETL-------- 725 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 726 ---------------FGRRRYVPDLNAR---VKSVREAAERMAFNMP------VQGTAAD 761 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE++ E P + L M A +PL Sbjct: 762 LMKLAMVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA--VPL 819 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 820 EVEVGMGEDW 829 >gi|266618521|pdb|3EYZ|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I With Duplex Dna (Open Form) Length = 580 Score = 306 bits (783), Expect = 9e-81, Method: Composition-based stats. Identities = 88/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82 D ++ A + + + L + S F+ V Sbjct: 32 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 85 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ + L+ A + V A KM++ + + Sbjct: 86 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 137 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196 R P+ + R E+ + + EQ L + + G Sbjct: 138 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 196 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + + + + ++Q + L + ++L LF + L + T+ Sbjct: 197 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 255 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + + R + + L++ + D + T+ Sbjct: 256 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 314 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372 ++TGR S QN+P + +R + SE Sbjct: 315 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 349 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 350 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 409 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ A Sbjct: 410 KAVNY--------------GIVYGISDYGLAQ---------------------------- 427 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + V ++ + G Sbjct: 428 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 472 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R D+ + R +Q + DI+ + Sbjct: 473 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 510 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ + ++L VHDE++ E P + L +M + +PLK Sbjct: 511 AMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 568 Query: 666 EGYESKRY 673 + + + Sbjct: 569 DYHYGSTW 576 >gi|210077505|gb|ACJ07017.1| PolI [Thermus sp. OH.A2] Length = 833 Score = 306 bits (783), Expect = 9e-81, Method: Composition-based stats. Identities = 98/610 (16%), Positives = 190/610 (31%), Gaps = 151/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + VL + + L++A + + V + + L++ Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTHPEGVARRYGGEFTEDAAERALLSERL 414 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 L ++ +++ E+ L + + Sbjct: 415 FQTLFPRLSEKL----------------------LWLYQ------EVERPLSRVLAHMEA 446 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--- 251 RG +DV L L+ ++ E +L+ E+ L + ++L+ LF E GL Sbjct: 447 RGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHP-FNLNSRDQLERVLFDELGLTPVGR 505 Query: 252 -EDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 E + +T Q L + + P + R S+ L+ L ++ GRL Sbjct: 506 TEKTGKRSTAQGALEALRGAHPIVELILQYR-ELSKLKSTYLDPLPRLVHPRTGRLHTRF 564 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 565 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRKAF 598 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 +A EG L+ AD + IE RVLA ++G++ + F G+D++ T A F + PA V + Sbjct: 599 VAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDQKM 658 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ + + + + Sbjct: 659 RRAAKTVN--------------FGVLYGMSAHRLSQELGID------------------- 685 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 E + + Q +V + + E+ G Sbjct: 686 -----------YKEAEAFIERYFQSFPKVRAW---IERTLEEGRTRGYVETL-------- 723 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + + R VQ + D Sbjct: 724 ---------------FGRRRYVPDLASR---VRSVREAAERMAFNMP------VQGTAAD 759 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPL 663 ++ M+ G ++L VHDE+V E P+ E +++ +M + + +PL Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENA--YPLDVPL 817 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 818 EVEVGVGRDW 827 >gi|38146983|gb|AAR11876.1| DNA polymerase I [Thermus filiformis] Length = 833 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 100/610 (16%), Positives = 189/610 (30%), Gaps = 151/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + VL + + L++A + + V + + L++ Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTNPEGVARRYGGEFTEDAAERALLSE-- 412 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 RLF +++ E+ L + + Sbjct: 413 --------------------RLFQNLFPRLSEKLLWLYQ------EVERPLSRVLAHMEA 446 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--- 251 RG +DV L L+ ++ E +L+ E+ L + ++L+ LF E GL Sbjct: 447 RGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHP-FNLNSRDQLERVLFDELGLTPVGR 505 Query: 252 -EDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 E + +T Q L + + P + R S+ L+ L ++ GRL Sbjct: 506 TEKTGKRSTAQGALEALRGAHPIVELILQYR-ELSKLKSTYLDPLPRLVHPRTGRLHTRF 564 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 565 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRKAF 598 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 +A EG L+ AD + IE RVLA ++G++ + F G+D++ T A F + PA V Sbjct: 599 VAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKM 658 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ + + + + Sbjct: 659 RRAAKTVNF--------------GVLYGMSAHRLSQELGID------------------- 685 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 E + + Q +V + + E+ G Sbjct: 686 -----------YKEAEAFIERYFQSFPKVRAW---IERTLEEGRTRGYVETL-------- 723 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + + R VQ + D Sbjct: 724 ---------------FGRRRYVPDLASR---VRSVREAAERMAFNMP------VQGTAAD 759 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPL 663 ++ M+ G ++L VHDE+V E P+ E +++ +M + + +PL Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENT--YPLDVPL 817 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 818 EVEVGVGRDW 827 >gi|2506365|sp|P80194|DPO1_THECA RecName: Full=DNA polymerase I, thermostable; AltName: Full=TAC polymerase 1 gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus caldophilus] Length = 834 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 95/610 (15%), Positives = 184/610 (30%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + VL + LD+ ++LA + + V + + L++ Sbjct: 357 DLAVLASREGLDLVPG--DDPMLLAYLLDPSNTTPEGVARRYGGEWTEDAAHRALLSERL 414 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 RN + ++ +E S + + Sbjct: 415 H---------RNLLKRLQGEEKL-----------LWLYHEVEKPLS------RVLAHMEA 448 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-LED 253 G +DVA L+ + E +L++E+ L + ++L+ LF E L L Sbjct: 449 TGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHP-FNLNSRDQLERVLFDELRLPALGK 507 Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 + +T VL + ++ P ++ +R ++ ++ L ++ + GRL Sbjct: 508 TQKTGKRSTSAAVLEALREAHPIVEKILQHR-ELTKLKNTYVDPLPSLVHPNTGRLHTRF 566 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 567 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 600 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 +A G LV D + IE RVLA ++G++ ++ F+ G+D++ T + F V P V Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 661 RRAAKTVNF--------------GVLYGMS------------------------------ 676 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + Q +V + + E+ + G Sbjct: 677 AHRLSQELAIPYEEAVAFIERYFQSFPKVRAW---IEKTLEEGRKRGYVETL-------- 725 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 726 ---------------FGRRRYVPDLNAR---VKSVREAAERMAFNMP------VQGTAAD 761 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE++ E P + L M A +PL Sbjct: 762 LMKLAMVKLFPRLREMGARMLLQVHDELLLEAPQAGAEEVAALAKEAMEKAYPLA--VPL 819 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 820 EVEVGMGEDW 829 >gi|312868776|ref|ZP_07728968.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3] gi|311095762|gb|EFQ54014.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3] Length = 885 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 92/665 (13%), Positives = 192/665 (28%), Gaps = 149/665 (22%) Query: 34 AFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 F D L D + + LK+ LE+ V N+ + L +D+ Sbjct: 341 GFVIGDGTTWLV--SRDAELLKQAPLKKLLESPAVAKNVFNAKAQIVGLHR-LGIDLRNV 397 Query: 92 RWICTLVLARSNGLPSALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 L+ + +G+ AL+ E + Sbjct: 398 D-FDLLLASYLLNTNDNSNDLGQVALEHDYH----------EVATDEEVYGKGAKRAI-- 444 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVD 200 + + F + ++ L Q L + + G V+ Sbjct: 445 PDDDQTFYTHLAQKARAINDLRDPLFKKLDDNQQTPLYTEIEVPLTRVLAAMEITGIKVN 504 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + + ++ ++ + + ++L LF + L + T+ + Sbjct: 505 SQTLKDMGSKLTERLADIEDQIYAAAG-EEFNINSTKQLGHILFEKLKLPVIKKTKTGYS 563 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL P + R ++ + L++ ++S + T ++TG Sbjct: 564 TAVDVLEKLADQAPIVEDILQYRQ-IAKLQSTYITGLLKVIHSSDQKIHTRYLQTLTQTG 622 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKL 376 R S QN+P +R + S EG ++ Sbjct: 623 RLSSVDPNLQNIPVRLPEGR-------------------------LIRKAFVPSHEGWQI 657 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVM 435 +D + +E RVLA + G++ + F+ GED++ +T R F++ ++ ++ R K + Sbjct: 658 FSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAV 717 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + Y ++++ + +E+ + + EH Sbjct: 718 NFGIVYGIS-----DYGLAQRIHVSRSQAHEFIQNYFKEFPGVKKYIDDTIAFAREHGYV 772 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + +RR +P ++ K Sbjct: 773 ETIT-----------------------------------------HRRRYLPDIHAKSFS 791 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 R+ +NT +Q + DI+ M+ Sbjct: 792 RRSF---------------AERTAMNT------------------PIQGSAADIIKIAMI 818 Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 + ++L +HDE+V E P + L +M S +PLK E Sbjct: 819 RMKEEIKQRQLQARMLLQIHDELVFEAPAEEIPVLQKLVPQVMDSAVQ--LNVPLKVESK 876 Query: 669 ESKRY 673 + Sbjct: 877 VGDTW 881 >gi|256419758|ref|YP_003120411.1| DNA polymerase I [Chitinophaga pinensis DSM 2588] gi|256034666|gb|ACU58210.1| DNA polymerase I [Chitinophaga pinensis DSM 2588] Length = 939 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 95/696 (13%), Positives = 194/696 (27%), Gaps = 152/696 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58 + D ET G A D ++ +F D + Sbjct: 367 EISFDTETT--------GTDANAVD--LVGMSFSIKAGEGWYIPVPADKAQAQAIVDSFL 416 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEAL 116 T +T++ N ++ V+K ++ T++ + + Sbjct: 417 PLFNTTHITLIGQNIKYDMIVMKWY-GVEFN-GPVFDTMLAHYLIEPEGRRGMDLLSAQY 474 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + LI + EY D +T ++ ++ Sbjct: 475 --LQYEPVSIETLIGK---------KGKGQGNMRDVEIDKIKEYAVEDADITLQLKEKFA 523 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 PL E L + + G +D+ ++ ++ E + ++ + + Sbjct: 524 PLLPLKAVDKVFYDVENPLVRVLTDMEYEGIALDIQALSDYSRELETEIKRAEESVYTQA 583 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L LF + L + T+T T + VL+ + R Sbjct: 584 GVR-FNLASPKQLGEVLFEKLLLDPKAKKTKTGQYATGEDVLAKLANKHQIVEDILVFR- 641 Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 S+ ++ L +N R+ + A TGR S QN+P + E Sbjct: 642 ELSKLKSTYVDALPLMLNKRTNRVHTSYNQAVA-VTGRLSSNNPNLQNIPIRTDRGRE-- 698 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 VR +A E L+ AD + IE R++A ++G+ + Sbjct: 699 -----------------------VRKAFVAKNEDYVLMSADYSQIELRIIAAISGDVHMI 735 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G D++ T A+ + V A VT D R K + + Y A + L + Sbjct: 736 DAFRQGLDIHAATAAKVYGVELADVTADMRRNAKSVNFGIIYGVSA-----FGLSENLGI 790 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 ++ ++ + + ++ ++ + +G +R K ++ V Sbjct: 791 ARGEAKTLIDNYFAQYPSIKKYMDDQIKSAQQNGYVETLLGR--KRWLKDINSSNAVVRG 848 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G A L + Sbjct: 849 Y---AERNAINMPIQGTAADMI-------------------------KLAMISIHKTLKK 880 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDEIVCETPD 638 N +R M+ +V VH Sbjct: 881 ENLRSR----------------------------MILQVHDE---LVFDVH--------K 901 Query: 639 TDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + ++ M + A +P+ E + Sbjct: 902 DEIEQIKPLIQDGMRNALPLA--VPVDVEIGIGVNW 935 >gi|291542252|emb|CBL15362.1| DNA polymerase I [Ruminococcus bromii L2-63] Length = 854 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 103/689 (14%), Positives = 207/689 (30%), Gaps = 175/689 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L+++FET E+ + FA FD D + + + Sbjct: 319 KKLYLNFET---------------ENKELKSFAVLFDGK----VYISTDEEL---FVKFI 356 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSS 120 ++++ N T+ +I + + A S Sbjct: 357 ADSELEKYTRNIK---TLYAYADEKNIDVENIVFDIELAAYLIEPSS------------- 400 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 K K L A + E + F Y + ++ +++ Sbjct: 401 -KDYSDKNLCASYEIALPVC------TDEQNEKYEAFACYA----ELCEKLGDKIKAHGQ 449 Query: 181 KEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 ++ L + + + G CVD + +++ + +L+ + + Sbjct: 450 EKLLSEIEIPLAKVLARMENIGVCVDRQGIESYGEMLSAQIKELETAIYESAGC-EFNIN 508 Query: 235 CLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF GL + T++ T VL S + P V R S+ Sbjct: 509 SPKQLGVVLFENLGLPCKKKTKSGYSTNAEVLESLRYEHPVVEMVLRYR-TLSKLNSTYC 567 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++ + DGR+ +RTGR S QN+P + E Sbjct: 568 EGLLKVIADDGRIHSNFNQ-TETRTGRISSTEPNLQNIPVRTELGRE------------- 613 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R A +G LV AD + IE RVLA ++G++ +KAF+ ED++ Sbjct: 614 ------------MRKFFCARDGWALVDADYSQIELRVLAHISGDKNMIKAFKDNEDIHAI 661 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T ++ FN+ VT R+ K + + Sbjct: 662 TASQVFNMPLDMVTPIMRSRAKAVNFGIV------------------------------- 690 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 A + + +++ +S V + + Sbjct: 691 -------------YGIGAFSLAKDIGVSNKEAKHYIESYLAHYSGVDSYMKNVVEKA--- 734 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + + GR ++ +++ + ++ R Sbjct: 735 -----------------------NADGYVETMFGRRRNLPELTSSKHMIRAFGERVAR-- 769 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ M+ + +VL VHDE++ E P + + Sbjct: 770 -------NMPIQGTAADIIKIAMIKVDERMKAENLRARLVLQVHDELIVEAPQDESMRVA 822 Query: 646 MLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ M + +PL A+ + + Sbjct: 823 LIVQEEMENAVK--MSVPLTADAAIGRTW 849 >gi|225570709|ref|ZP_03779732.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM 15053] gi|225160536|gb|EEG73155.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM 15053] Length = 871 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 89/677 (13%), Positives = 192/677 (28%), Gaps = 159/677 (23%) Query: 17 TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---PVMPQVLKEALENTDVTIVAHNS 73 TK + +A + + + D + + LKE + S Sbjct: 330 TKNTLPLFAGQADIGGIGLCYGADKIFCIRADGDITAEYLLRELKEV---SGSVQTF--S 384 Query: 74 YFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVG-EALKLSSQKMEEGKEL 129 F+ F + + A + V E L L + Sbjct: 385 MFDIKESMQYFTVA-EPSACFDVTIAAYLLNPLKNDYTYEDVAREQLGLLLE-------- 435 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQELWYL 188 D+ + + + + + Y V R+ + + + E+ + Sbjct: 436 --------------DKVEDHVKVCYEAYTAYAS--VEPLRQKLKETQMEHLFTDIEMPLV 479 Query: 189 --DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + G ++ + + ++ +L++E+ + ++L LF + Sbjct: 480 FTLYDMEQNGVRIEAEALKFYGEQLGIKIEELEKEIYEAAG-EEFNINSPKQLGVILFDK 538 Query: 247 TGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 GL T+ +T VL P Q+ R ++ + L ++ DGR Sbjct: 539 MGLKGGKKTKTGYSTAADVLDKLAPDYPVVAQILEYRQ-LTKLKSTYADGLSNYISGDGR 597 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + G + TGR S QN+P Sbjct: 598 IHGKFNQ-TITATGRISSTEPNLQNIPVRMELGR-------------------------L 631 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R I +G + AD + IE RVLA +G++ + A++ +D++ T ++ F+V + Sbjct: 632 IRKVFIPEDGYVFIDADYSQIELRVLAHCSGDEQLINAYKEQKDIHRITASQVFHVPFGE 691 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT QR K + + Y + L+ Sbjct: 692 VTDLQRRNAKAVNFGIVYG-----ISSFGLSQDLS------------------------- 721 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 + + + + + ++ ++ Sbjct: 722 --------------ITRKEAAKYIDDYFKTYPGIKLFLDDTVAHAKE------------- 754 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 ++ GR ++ ++ + R +Q Sbjct: 755 -------------MGYVVTLFGRRRPVPELSSSNFMQRSF---GERVAMNSP------IQ 792 Query: 604 AVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPS 656 + DI+ M+ + +VL VHDE++ E + + M S Sbjct: 793 GTAADIIKIAMIGVNRRLKEKHMRSRLVLQVHDELLIEAYGPELEEVKAILKDEMEHAAS 852 Query: 657 WAKGLPLKAEGYESKRY 673 +PL+ + + + Sbjct: 853 --LEVPLEIDMHTGDNW 867 >gi|300173072|ref|YP_003772238.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811] gi|299887451|emb|CBL91419.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811] Length = 893 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 90/633 (14%), Positives = 187/633 (29%), Gaps = 130/633 (20%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAV 112 LK +EN + N + +LK + + + L+++ L + Sbjct: 372 ELKSVIENAGIIKNVFNIKAQLILLKR-LGIKLKGTK-FDFLLVSYLLDTTDNDNELATL 429 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + L E+ A+F E + + E D + Sbjct: 430 AQRFDLYMTSDEDIYGKGAKFAIPEDDARVLAHLANKADILMQ--VEQSAFDA---LQEH 484 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ + E L + + +G +D + ++ ++ + + G + Sbjct: 485 EQTHLYTEIELPLAQVLADMEYQGIKIDQKRLRDIGSDLEGRIHAIEDAIY-IEAGEKFN 543 Query: 233 SRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + GL + T+ +T VL P + R ++ Sbjct: 544 INSPKQLGVLLFEKMGLPVVKRTKTGYSTAVDVLEKLAAQAPIVDHILQYRQ-LAKLKST 602 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L+ ++ T ++TGR S QN+P + Sbjct: 603 YVEGLLTVVHDQDSKIHTRFLQTLTQTGRLSSVDPNLQNIPMRTEEGR------------ 650 Query: 350 ITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 +R+ + ++V AD + IE RVLA M G++ +AF GED+ Sbjct: 651 -------------QIRTAFVPSEPNWQIVGADYSQIELRVLAHMTGDKNMQRAFLNGEDI 697 Query: 409 YVTTYARSFNVAPAQVTKD-QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + T F + R K + + Y L ++ Sbjct: 698 HAETARAVFGLKDDAPVDALMRRTAKAVNFGIVYGIS-----DFGLANNLGISRGEAKSF 752 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 ++ +E+ + ++E E + Sbjct: 753 IDTYFKEFPQIHAWMAKIKEIAHEQGFVETI----------------------------- 783 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 A++RR +P + K R+ +N+ Sbjct: 784 ------------AKRRRYLPEIGSKNFNLRSF---------------AERTAMNSP---- 812 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDE 641 +Q + DI+ M+ ++L VHDE++ E P + Sbjct: 813 --------------IQGSAADIIKIAMIKVADALQEHHMQARMLLQVHDELIFEAPIDEI 858 Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + L ++M S +P++ E + + Sbjct: 859 QELTELVTNVMDSAV--VLDVPMRVESHYGNTW 889 >gi|227833200|ref|YP_002834907.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] gi|227454216|gb|ACP32969.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] Length = 880 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 89/629 (14%), Positives = 174/629 (27%), Gaps = 148/629 (23%) Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLP---SALKAVGEALKL 118 ++D H + +L I + T + A AL V + Sbjct: 377 SSDAPKYLHEAKAAWHMLA---GRGIELRGIAHDTALAAYLLRPGQRTYALTDVSQRHL- 432 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA--WRLFGEYCKGDVTVTREIFKRLE 176 + E G + +T ++ + Sbjct: 433 ------------------QKSLGAATEQLSILDENPLVDQAGAIMELAAELTAQLQEIDS 474 Query: 177 PLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + EL + + G VD + T + + ++ L + Sbjct: 475 FELYTDLELPLVSILAQMEAAGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLN 534 Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLK 290 ++L+ LF + T+ +T + + P + Sbjct: 535 SPKQLQAVLFDTFDMPKTKKTKTGYSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTT- 593 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L++ + DGR+ T + TGR S QN+P + + Sbjct: 594 LEGLIKTIQPDGRIHTTFNQ-TVTSTGRLSSTEPNLQNIPVRTEAGR------------- 639 Query: 351 TSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS + EG L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 640 ------------QIRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLH 687 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 ++ F+V +VT + R K M L GL+ + Sbjct: 688 NYVGSKVFDVPVDEVTPELRRRVKAMSYGLV--------------YGLSAFGLSQQ---- 729 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + +++ ++ V L + Sbjct: 730 --------------------------LGIPAREAKEIMESYFERFGGVKRY---LDEVVV 760 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 Q ++G GR ++ ++ R Sbjct: 761 QARKDGYTSTV-----------------------FGRRRYLPELNSDN---RVARENAER 794 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ M+ KA ++L VHDE+V E + + Sbjct: 795 AALNAP------IQGTAADIIKVAMIRVDKALEALASRVLLQVHDELVVEVAPGEAEDVQ 848 Query: 646 MLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + M +PL+ K + Sbjct: 849 RILEREMDKAIE--LTVPLEVSVGVGKNW 875 >gi|29726425|pdb|1LV5|A Chain A, Crystal Structure Of The Closed Conformation Of Bacillus Dna Polymerase I Fragment Bound To Dna And Dctp gi|29726426|pdb|1LV5|B Chain B, Crystal Structure Of The Closed Conformation Of Bacillus Dna Polymerase I Fragment Bound To Dna And Dctp Length = 580 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 86/661 (13%), Positives = 177/661 (26%), Gaps = 141/661 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFNLDIP 89 + + + L + S F+ V +++ Sbjct: 37 VGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALKWKGIELC 92 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + L+ A + V A KM++ + + R P+ Sbjct: 93 GVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA---KRAVPD 143 Query: 150 HREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVAL 203 + R E+ + + EQ L + + G VD Sbjct: 144 EPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKR 203 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260 + + + + ++Q + L + ++L LF + L + T+ +T Sbjct: 204 LEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSA 262 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL + + R + + L++ + D + T+ ++TGR S Sbjct: 263 DVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLS 321 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVA 379 QN+P + +R + SE + A Sbjct: 322 STEPNLQNIPIRLEEGRK-------------------------IRQAFVPSESDWLIFAA 356 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA +A + ++AF D++ T F V+ +VT + R K + Sbjct: 357 DYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNF-- 414 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 G++ A Sbjct: 415 ------------GIVYGISDYGLAQ------------------------------NLNIS 432 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + + V ++ + G Sbjct: 433 RKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH----------------- 472 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-- 617 R D+ + R +Q + DI+ + M++ Sbjct: 473 ------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKKAMIDLNA 517 Query: 618 ----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672 + ++L VHDE++ E P + L +M + +PLK + + Sbjct: 518 RLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKVDYHYGST 575 Query: 673 Y 673 + Sbjct: 576 W 576 >gi|306991581|pdb|2XO7|A Chain A, Crystal Structure Of A Da:o-Allylhydroxylamine-Dc Basepair In Complex With Fragment Dna Polymerase I From Bacillus Stearothermophilus Length = 580 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 87/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82 D ++ A + + + L + S F+ V Sbjct: 32 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 85 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ + L+ A + V A KM++ + + Sbjct: 86 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 137 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196 R P+ + R E+ + + EQ L + + G Sbjct: 138 -KRAVPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 196 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + + + + ++Q + L + ++L LF + L + ++ Sbjct: 197 VKVDTKRLEQMGEELAEQLRTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKSK 255 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + + R + + L++ + D + T+ Sbjct: 256 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 314 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372 ++TGR S QN+P + +R + SE Sbjct: 315 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 349 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 350 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 409 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ A Sbjct: 410 KAVNF--------------GIVYGISDYGLAQ---------------------------- 427 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + V ++ + G Sbjct: 428 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 472 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R D+ + R +Q + DI+ + Sbjct: 473 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 510 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ + ++L VHDE++ E P + L +M + +PLK Sbjct: 511 AMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 568 Query: 666 EGYESKRY 673 + + + Sbjct: 569 DYHYGSTW 576 >gi|157833899|pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase Length = 832 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + +VL L +P ++LA + + V Sbjct: 355 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 395 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 GE E +R + R L+G R ++ E+ L + + Sbjct: 396 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 446 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250 G +DVA L+ V E +L+ E+ L + ++L+ LF E GL Sbjct: 447 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 505 Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 E + +T VL + ++ P ++ R ++ ++ L + ++ GRL Sbjct: 506 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 564 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR C QN+P + + +R Sbjct: 565 NQ-TATATGRLCCCDPNLQNIPVRTP-------------------------LGQRIRRGF 598 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V V Sbjct: 599 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 658 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 659 RRAAKTINF--------------GVLYGMS------------------------------ 674 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + + Q +V + + E+ G Sbjct: 675 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 723 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 724 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 759 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE+V E P + L +M A +PL Sbjct: 760 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 817 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 818 EVEVGIGEDW 827 >gi|187933407|ref|YP_001886833.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B] gi|187721560|gb|ACD22781.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B] Length = 871 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 96/652 (14%), Positives = 191/652 (29%), Gaps = 146/652 (22%) Query: 38 DDHPVELWD-----CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 ++ + D + +L+ +E+ V V H+S T L ++DI Sbjct: 346 EEGRSHVIDFKLVSMSNREKALNLLRTFMEDKTVKKVIHDSKNLITFLNKY-DIDIQGFD 404 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 T + A A V + + +K I C C K + Sbjct: 405 -FDTAIAAYLIDSSKANYEVFDLINRFLEKD------IKSDCDDLKAICSSYLTKLYEKL 457 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 RL D+ E++ ++E L Y+ ++ G+ ++ L Sbjct: 458 KERLHK----EDMD---ELYYKVE------HPLIYVLSSMESIGFKINKDKLEELRIKFK 504 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKL 269 + K ++E+ L + ++L LF + L + T+ +T Q VL Sbjct: 505 EQIEKTEKEIYEL-ADEEFNVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLIDK 563 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P +V R ++ + L ++ DG + + TGR S QN+ Sbjct: 564 HPIITKVMYYRQ-ITKINSTYVEGLKNVIDIDGCIHSNFNQTVTT-TGRLSSTEPNLQNI 621 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARV 388 P +E +R I + L+ D + IE RV Sbjct: 622 PIKYEMGKE-------------------------IRKVFIPQDSDDILISCDYSQIELRV 656 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A ++ + AFE D++ T + F V +VT R+ K + + Y + Sbjct: 657 LAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYGISDFSL 716 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 A + Sbjct: 717 --------------------------------------------AQDLKITKKEAAEYMA 732 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +++ ++ E N + + ++ ++ R Sbjct: 733 IYFERYPKIKEYLNYVSEYAKE--------------------------KGYVLTILNRRR 766 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GY 622 ++ ++ + R +Q + DI+ M+N Sbjct: 767 FIPEIKSSNKIVKAL---GERLAMNAP------IQGSAADIIKLAMVNVYNKLREKNLNS 817 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 +++L VHDE++ + L M + L + + Sbjct: 818 ELILQVHDELILNVKKDEFDIVKQLVIEEMEKAIK--LNVALDVDLKYGYTW 867 >gi|323141560|ref|ZP_08076445.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067] gi|322413972|gb|EFY04806.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067] Length = 878 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 88/662 (13%), Positives = 180/662 (27%), Gaps = 166/662 (25%) Query: 21 ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL 80 Y ++ D+ + L D L + + + L Sbjct: 356 PELYFSSAEILA------DNKIYLLDAQSG--CWDKFDSWLSDAGSKKIT----IDSKEL 403 Query: 81 KAC-FNLDIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCK 135 C + + + + L+ + L + L+ K Sbjct: 404 YKCCLCRKVKVQGIVDDVALAGYVADPGHSSYSLEDLSRR-NLPGVLATPCENLLQLASK 462 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195 + + +++ E L + + Sbjct: 463 LRSLLAEQQQ-----------------------LKLY------EEFELPLAPVLAQMEFA 493 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G D L LN+ + KL+ + + + ++L LF L + T Sbjct: 494 GITPDKELLLQLNEDMGHRIAKLEALAQEQAG-EEFNLKSPKQLGVILFERLQLPVIKKT 552 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T +VL + + P + +R + ++ L L +N T Sbjct: 553 KTGYSTDAKVLEALEGKHPLIATILEHR-KLAKLQSTYLEGLQPLINPKTGRIHTHFQQT 611 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P + S +R + Sbjct: 612 VTVTGRLSSTDPNLQNIPARTEE-------------------------SRQIRRIFVPGA 646 Query: 373 GK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 G L+ D + +E R+LA +A ++ L+AF G+D++ T A F V +VT R+ Sbjct: 647 GYDLLMSCDYSQVELRILACIAQDELLLEAFRHGQDIHARTAAEVFGVPLDEVTPQMRSR 706 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y L+ Sbjct: 707 AKAVNFGIVYGIS-----DFGLAKQLD--------------------------------- 728 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 ++ ++++ V + ++ + Sbjct: 729 ------VGRKEAAGYIASYFERYTGVKKYMEDIVAEARE--------------------- 761 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + GR ++ ++ R +Q + DI+ Sbjct: 762 -----QGYVSTLMGRRRYLPEIRSSNF---NLRSFAERTAINTP------IQGTAADIMK 807 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 + M+ + I+L VHDE+V E + ++ + L M S +PL Sbjct: 808 KAMIAVQRELDKAQCKSRILLQVHDELVLEVTEDEKEQVAQLVRTAMEGAAS--LDIPLL 865 Query: 665 AE 666 A+ Sbjct: 866 AD 867 >gi|291550064|emb|CBL26326.1| DNA polymerase I [Ruminococcus torques L2-14] Length = 871 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 85/664 (12%), Positives = 187/664 (28%), Gaps = 165/664 (24%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY----FERTVLKACFNL-- 86 + ++ + C D E L ++H + F LK Sbjct: 346 VSLCYEAEKIVTIPCDMDADF-----EYLT----GKLSHLAKSVKRFSMCGLKEYLEWLP 396 Query: 87 DIPIHRWICTLVLARSNGL---PSALKAVGEALK--LSSQKMEEGKELIARFCKGETHEC 141 ++ +V A + V L +K++EG + Sbjct: 397 ELTSENGFDAIVAAYLLNPLKNDYNAEDVAREHLNLLIDEKLDEGTKSC----------- 445 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL--DQTINDRGYCV 199 + + Y V + +++ + E E+ + + G V Sbjct: 446 ------------YEAYTAYACVPV-LEKKLEENGMFCLFNEIEMPLVFTLYDMEQAGVKV 492 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256 + + + +L++E+ + + ++L LF + + T+ Sbjct: 493 EGEELKRYGEELGARIVELEKEIYEMAG-EEFNINSPKQLGVILFEKLEMPHAKKTKTGY 551 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL P ++ R ++ + L + DGR+ + T Sbjct: 552 STAADVLDKLAPEYPIVAKILEYRQ-LAKLKSTYADGLANYIGMDGRIHSKFNQ-TITAT 609 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + +R + EG Sbjct: 610 GRISSTEPNLQNIPVR-------------------------MELGRLIRKVFVPKEGCVF 644 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V AD + IE R+LA +G++ ++A+ D++ T ++ F+V +VT QR K + Sbjct: 645 VDADYSQIELRILAHCSGDEQLIQAYREARDIHRMTASQVFHVPFDEVTDLQRRNAKAVN 704 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y + L+ Sbjct: 705 FGIVYG-----ISSFGLSQDLS-------------------------------------- 721 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + + + + + ++ ++ Sbjct: 722 -ISRKEAAQYIEHYFESYPGIKTFLDKCVSDAKE-------------------------- 754 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 GR ++ ++ + R +Q + DI+ M++ Sbjct: 755 KGYAETLYGRRRPMPELKSSNFMQRSF---GERVAMNAP------IQGTAADIIKIAMIH 805 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYE 669 + ++L VHDE++ E +T+ + M +PL + + Sbjct: 806 VNEELKKRNLKSRMILQVHDELLIEADETELEEVQQILQDKMEHAAELL--VPLSVDMHT 863 Query: 670 SKRY 673 K + Sbjct: 864 GKNW 867 >gi|299143758|ref|ZP_07036838.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518243|gb|EFI41982.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 885 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 96/650 (14%), Positives = 193/650 (29%), Gaps = 132/650 (20%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A + + + + K+ E+ ++ + HN + L N DI I Sbjct: 341 IAIKVQNEATCIIKIDCKEDILK-FKDVFEDENIEKLGHNLKEDMITL---LNFDINIKN 396 Query: 93 W-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNH 150 + + + + + +S+ G K+L KG+ D Sbjct: 397 YTHDSEIAEYILNSTESNYDIN---NISNTYFSRGYKDLEELLGKGKKKIKFSDLKYDEL 453 Query: 151 REAWRLFGE--YCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 + + + Y DV + + + E L + ++ G D A+ + Sbjct: 454 CKYFSFYLNSVYKLRDVQLEKIRKQEMDDLYFEVELPLIEVLSSMELIGIRTDNAILDEI 513 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 +D + L+ ++ + +KL LF + G + T+ +T VL Sbjct: 514 GIDLDNKILNLENDIYEKAG-EEFNINSPKKLGLILFDKLGYPVLKKTKTGYSTNADVLE 572 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCV 323 KK V R + ++ + L E +N + G + + TGR S Sbjct: 573 KLKKDGDIIDDVLEYR-KLAKLKSTYVEGLKELINVATGHIHSHFNQ-TITSTGRISSTN 630 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+P + + +R ++SEG LV AD + Sbjct: 631 PNLQNIPIKTDEGK-------------------------LIRKAFLSSEGCVLVDADYSQ 665 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA ++ ++ + AFE +D++ T A+ F V VT R+ K + + Sbjct: 666 IELRVLADISKDENMISAFENDDDIHRRTAAKVFGVDFEDVTPSLRSRAKAVNFGIV--- 722 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G++ + Sbjct: 723 -----------YGISDYGLSQ------------------------------NLNIPRKLA 741 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + + + E + +NG Sbjct: 742 QEYIENYLLTYDGIKNYMTE---EVKLAKKNGYVKTILN--------------------- 777 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620 R ++ R +Q + DI+ M+ +A Sbjct: 778 --RRRYIPELSAKNF---NIRSFGERIAINTP------IQGSAADIIKIAMVKVYRALKE 826 Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666 ++L +HDE++ + + + L +M + + LK + Sbjct: 827 NNLKSKLILQIHDELIVDAREDEVETVKKLMRNIMENAVEMV--VKLKVD 874 >gi|251779451|ref|ZP_04822371.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083766|gb|EES49656.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 871 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 93/654 (14%), Positives = 191/654 (29%), Gaps = 150/654 (22%) Query: 38 DDHPVELWD-----CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 ++ + D + +L+ +E+ V V H+S T L ++DI Sbjct: 346 EEGRSHVIDFKLVSMSNREKALNLLRTFMEDETVKKVIHDSKNLITFLNKY-DIDIQGFD 404 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK--ELIARFCKGETHECLYDRNKPNH 150 T + A A V + + +K + +L A + + Sbjct: 405 -FDTAIAAYLIDSSKANYEVFDLINRFLEKDIKSDSNDLKAICSSYLKKLYEKLKEMLH- 462 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 K D+ E++ ++E L Y+ ++ G+ ++ L Sbjct: 463 -----------KEDMD---ELYYKVE------HPLIYVLSSMESIGFKINQDKLEELRVK 502 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267 + K ++E+ L + ++L LF + L + T+ +T Q VL Sbjct: 503 FKEQIEKTEKEIYEL-ADEEFNVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLI 561 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 P +V R ++ + L ++ DG + + TGR S Q Sbjct: 562 DKHPIITKVMYYRQ-ITKINSTYVEGLKNVIDIDGCIHSNFNQTVTT-TGRLSSTEPNLQ 619 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEA 386 N+P +E +R I + L+ D + IE Sbjct: 620 NIPIKYEMGKE-------------------------IRKVFIPQDSDDILISCDYSQIEL 654 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA +A ++ + AFE D++ T + F V +VT R+ K + + Y Sbjct: 655 RVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYGISDF 714 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 + A + Sbjct: 715 SL--------------------------------------------AQDLKITKKEAAEY 730 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + +++ ++ E N + + ++ ++ R Sbjct: 731 MAIYFERYPKIKEYLNYVSEYAKE--------------------------KGYVLTILNR 764 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620 ++ ++ + R +Q + DI+ M+N Sbjct: 765 RRFIPEIKSSNKIVKAL---GERLAMNAP------IQGSAADIIKLAMVNVYNKLREKNL 815 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 +++L VHDE++ + L M + L + + Sbjct: 816 NSELILQVHDELILNVKKDEFDIVKQLVIEEMEKAIK--LNVALDVDLKYGYTW 867 >gi|32266816|ref|NP_860848.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449] gi|32262868|gb|AAP77914.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449] Length = 912 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 102/707 (14%), Positives = 201/707 (28%), Gaps = 179/707 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQ-- 55 + D E+ S ++ ++ F+F FD H + Sbjct: 345 KIGFDCESDSLN----------MQEANLVGFSFCFDGENAYYVPVGHHYLGVGCQLTHTQ 394 Query: 56 ---VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALK 110 LK ++ HN F+ +++ L+ +++L P L Sbjct: 395 AKIALKRIF---TYPLIGHNLKFDLSLIFHTLELE-HTGEIYDSMILGWLYDSIAPIGLD 450 Query: 111 AVGEALKLSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 K+++ F + + + +++ + +Y D T Sbjct: 451 ----------------KQMLKWFNHTMISFDSVVAKDENFSQVNIAAATQYAAEDAIATF 494 Query: 170 EIFKRLEPLSSKE-------------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 ++ RLE + K + + G VD+ L +L + + Sbjct: 495 RLYHRLEEVFYKREWSSILELANKLEYPFIKVLLAMECEGIKVDIPLLESLKEKASEHIS 554 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE---DLTETTCQRVLSSNKKLTPQA 273 +L ++ L + ++L LF GL +T +R L + P Sbjct: 555 QLSAQIFELCG-ETFNLNSPQQLAHILFNRLGLKAGRSVKGGLSTDERTLLAIIDAHPVI 613 Query: 274 IQVFNNRMRASRSAVLKLNTLVEA--MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + + R ++ + L+ N R+ + G + TGR S QN+P Sbjct: 614 ALILDYR-EVNKLKSTYIEPLLRFGSANDKHRIYTSFLQSG-TATGRLSSKSPNLQNIPV 671 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + +R I+ EG L+ D + IE R+LA Sbjct: 672 RREEGRK-------------------------IRQAFISKEGHSLISIDYSQIELRLLAH 706 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 + +++F+ +D++ T AR F V ++ +RAI K + L Y Sbjct: 707 FCKDSSLIESFKQDKDIHFETAARLFGV---ELAAQKRAIAKSINFGLIY---------- 753 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 + A + +++ Sbjct: 754 ----------------------------------GMGSKKLAQTLQISLKEAKNYIESYF 779 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + N + + + RR Y + R Sbjct: 780 ALFPTIKNFLNAQKEFLLE--NGYSQTLLGHRR-----YFDFKNATDFMKANFLR----- 827 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLT 627 + +I Q + D++ M K + ++L Sbjct: 828 ------------------------EGINSIFQGSAADLIKLSMCEIHKRYGHSDFKMLLQ 863 Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE++ E P + A +M +PLK K + Sbjct: 864 VHDELIFEAPQEKAHIYAQEAAQIMNHIYE--LEVPLKCGISIGKNW 908 >gi|168187834|ref|ZP_02622469.1| DNA polymerase type I [Clostridium botulinum C str. Eklund] gi|169294285|gb|EDS76418.1| DNA polymerase type I [Clostridium botulinum C str. Eklund] Length = 878 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 90/650 (13%), Positives = 191/650 (29%), Gaps = 157/650 (24%) Query: 38 DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97 D V+ + ++LK EN + V H+S VL N+ T Sbjct: 368 DKEEVKYF---------EILKNLFENEKIKKVCHDSKKVYVVLNKH-NITAKNIA-FDTK 416 Query: 98 VLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 + A + LK + E + L S K + N+ + + Sbjct: 417 IAAYLLQPSKSDYMLKDLIEEMLLLSLKEYDN----------------IKINETYYIKDI 460 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 E + + ++ + E L + ++ G+ VD + + E Sbjct: 461 YEKLEKDIKESNMEELLY-------TVELPLVEVLASMECAGFRVDENRLTEIGEKFKKE 513 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTP 271 L++E+ L + + ++L LF + L + T+ +T VL K P Sbjct: 514 IETLEKEIHEL-ADEEFNIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHP 572 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ R ++ + L ++ DG++ + + TGR S QN+P Sbjct: 573 IIEKIIEYRQ-ITKLDSTYVEGLKNVIDGDGKIHSSFNQTVTT-TGRLSSTEPNLQNIPI 630 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLA 390 E +R + + + + AD + IE R+L+ Sbjct: 631 KHEMGRE-------------------------IRKVFVPNNNESVIFSADYSQIELRILS 665 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 +A ++ + AF+ +D++ T + F V +VT R+ K + + Sbjct: 666 HIADDEKLIDAFKHHKDIHTITASEVFKVPIDEVTPLMRSNAKAVNFGIV---------- 715 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 + + + + Sbjct: 716 ----------------------------------YGIGAFSLSKDINVSRKEAKEYIDTY 741 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 ++ V + +E+ E + + R Sbjct: 742 FSRYPNVKKYIDEIISKAE--------------------------VDGFVTTILNRKRYI 775 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDI 624 ++ + + R +Q + DI+ M+ + Sbjct: 776 PEIQSRNKIVRG---FGERLAMNTP------IQGSAADIIKLAMVEVYNELKNRNLKSTL 826 Query: 625 VLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +L VHDE++ + M+ M + +PL+A+ + + Sbjct: 827 ILQVHDELILNVYKDELEEVKNMVVDKMENVMKLL--VPLEADVNAGETW 874 >gi|806281|gb|AAC37139.1| DNA polymerase I [Geobacillus stearothermophilus] Length = 876 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 86/665 (12%), Positives = 178/665 (26%), Gaps = 137/665 (20%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82 ++ A + + + L + F+ V Sbjct: 328 HHAPIVGIALA--NERGRFFLRPETALADPKFLAWLGDETKKKT----MFDSKRAAVALK 381 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ L+ A A V K+ + E + + KG Sbjct: 382 WKGIELR-GVVFDLLLAAYLLDPAQAAGDVAAVAKMHQYEAVRSDEAV--YGKGAKRTVP 438 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200 + H + + E+ + + E E + + G VD Sbjct: 439 DEPTLAEHLARKAAAIWALEE--PLMDELRRNEQDRLLTELEQPLAGILANMEFTGVKVD 496 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + + + +++ + L + ++L T LF + L + T+ + Sbjct: 497 TKRLEQMGAELTEQLQAVERRIYELAGQ-EFNINSPKQLGTVLFDKLQLPVLKKTKTGYS 555 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRT 316 T VL + + R + + L++ ++ G++ ++T Sbjct: 556 TSADVLEKLAPHHEIVEHILHYRQ-LGKLQSTYIEGLLKVVHPVTGKVHTMFNQA-LTQT 613 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKK 375 GR S QN+P + +R + Sbjct: 614 GRLSSVEPNLQNIPIRLEEGRK-------------------------IRQAFVPSEPDWL 648 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 + AD + IE RVLA +A + ++AF G D++ T F+V+ VT + R K + Sbjct: 649 IFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEEDVTANMRRQAKAV 708 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ A Sbjct: 709 NF--------------GIVYGISDYGLAQ------------------------------N 724 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + + V + + + Q +Q G Sbjct: 725 LNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQ---KGYVTTLLH------------- 768 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 R D+ + R +Q + DI+ + M+ Sbjct: 769 ----------RRRYLPDITSRNF---NVRSFAERTAMNTP------IQGSAADIIKKAMI 809 Query: 616 NA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 + + ++L VHDE++ E P + L +M A +PLK + + Sbjct: 810 DLSVRLREERLQARLLLQVHDELILEAPKEEIERLCRLVPEVMEQAV--ALRVPLKVDYH 867 Query: 669 ESKRY 673 + Sbjct: 868 YGPTW 872 >gi|225181342|ref|ZP_03734786.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1] gi|225167923|gb|EEG76730.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1] Length = 878 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 178/659 (27%), Gaps = 148/659 (22%) Query: 32 LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY---FERTVLKACFNLDI 88 F+ D + E L H + ++ + Sbjct: 343 GFSVAVAD-KTYYLPIT-GENELSKIMELLT-------GHQALTVVYDAKTWHNLSAVAS 393 Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 + A QK+ + + + N+ Sbjct: 394 DTA-VFDVSLAAYLLDPLEN--------GYPPQKLAARYLDRILPEEPKKKKGEAVCNRD 444 Query: 149 NHREAWRLFGE-YCKGDVTVTREIFKRLEPLSSKEQELWYL--DQTINDRGYCVDVALAH 205 A R + Y D ++ + ++ EL + G VD+ Sbjct: 445 FSCAAVRTLYDLYPLLD----EKLKEASLDHLYEDLELPLAYTLARMERTGVAVDLQALD 500 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262 + L+QE+ SL + ++L LF + GL T+ +T +V Sbjct: 501 AMKTEFRERIGALEQEIYSLAG-EEFNLNSPKQLGQILFDKLGLPALKKTKTGYSTDAKV 559 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSG 321 L ++ R + L L + +N GR+ + TGR S Sbjct: 560 LEELAPHHEVVAKILKYR-TLIKILTTYLEGLSKLVNEQTGRIHTHFNQ-TVTATGRLSS 617 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P VR + +G L+ AD Sbjct: 618 TEPNLQNIPIRLEEGRR-------------------------VRRAFVPGKKGNLLLSAD 652 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA ++ + + +F ED++ T A F V P VT + R K + + Sbjct: 653 YSQIELRILAHVSKDPVLIDSFRKEEDIHRRTAAEVFGVLPEDVTPELRDRAKAVNFGIV 712 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + + E +F + E+ ++ Sbjct: 713 YGIS-----DYGLSQQLKIPRQEAKEYISRYFERLPGVRDFIHNVVEDAKKNGYVTTL-- 765 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + K Sbjct: 766 ---------------------------------------LNRRRYLPDINAKNFNQRSF- 785 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT +Q + DI+ M+ +A Sbjct: 786 --------------AERTAMNT------------------PIQGTAADIIKLAMLRVEEA 813 Query: 621 GY-----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 +VL VHD++V E + N + L M S A +PL + + Sbjct: 814 LAGMDDVQMVLQVHDDLVFEVKEESLINVARLVKKQMESALELA--VPLTVDVKAGLNW 870 >gi|188589036|ref|YP_001921778.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43] gi|188499317|gb|ACD52453.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43] Length = 871 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 93/654 (14%), Positives = 191/654 (29%), Gaps = 150/654 (22%) Query: 38 DDHPVELWD-----CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 ++ + D + +L+ +E+ V V H+S T L ++DI Sbjct: 346 EEGRSHVIDFKLVSMSNREKALNLLRTFMEDETVKKVIHDSKNLITFLNKY-DIDIQGFD 404 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK--ELIARFCKGETHECLYDRNKPNH 150 T + A A V + + +K + +L A + + Sbjct: 405 -FDTAIAAYLIDSSKANYEVFDLINRFLEKDIKSDSNDLKAICSSYLKKLYEKLKEMLH- 462 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 K D+ E++ ++E L Y+ ++ G+ ++ L Sbjct: 463 -----------KEDMD---ELYYKVE------HPLIYVLSSMESIGFKINKDKLEELRVK 502 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267 + K ++E+ L + ++L LF + L + T+ +T Q VL Sbjct: 503 FKEQIEKTEKEIYEL-ADEEFNVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLI 561 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 P +V R ++ + L ++ DG + + TGR S Q Sbjct: 562 DKHPIITKVMYYRQ-ITKINSTYVEGLKNVIDIDGCIHSNFNQTVTT-TGRLSSTEPNLQ 619 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEA 386 N+P +E +R I + L+ D + IE Sbjct: 620 NIPIKYEMGKE-------------------------IRKVFIPQDSDDILISCDYSQIEL 654 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA +A ++ + AFE D++ T + F V +VT R+ K + + Y Sbjct: 655 RVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYGISDF 714 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 + A + Sbjct: 715 SL--------------------------------------------AQDLKITKKEAAEY 730 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + +++ ++ E N + + ++ ++ R Sbjct: 731 MAIYFERYPKIKEYLNYVSEYAKE--------------------------KGYVLTILNR 764 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620 ++ ++ + R +Q + DI+ M+N Sbjct: 765 RRFIPEIKSSNKIVKAL---GERLAMNAP------IQGSAADIIKLAMVNVYNKLREKNL 815 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 +++L VHDE++ + L M + L + + Sbjct: 816 NSELILQVHDELILNVKKDEFDIVKQLVIEEMEKAIK--LNVALDVDLKYGYTW 867 >gi|256850824|ref|ZP_05556213.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN] gi|260661035|ref|ZP_05861949.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN] gi|282934507|ref|ZP_06339762.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] gi|297205697|ref|ZP_06923092.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16] gi|256615886|gb|EEU21074.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN] gi|260547972|gb|EEX23948.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN] gi|281301454|gb|EFA93743.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] gi|297148823|gb|EFH29121.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16] Length = 885 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 99/670 (14%), Positives = 198/670 (29%), Gaps = 163/670 (24%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEALENTDVTIVAHNSYFERTVLKA--- 82 + F+ D+ +D + Q L LE+ + N F+ LK Sbjct: 339 ADFVGFSLKMGDN----IYVSNDVSLLTKQPLLSLLEDQAIAK---NV-FD---LKRTMV 387 Query: 83 -CFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE------ALKLSSQKMEEGKELIARFC 134 + L I H L+ + + +GE L GK A Sbjct: 388 GLYRLGIKSHNMNYDMLLASYLVNNENNSNDLGEICQLYNYYDLQPDIDIYGKGKKAAIP 447 Query: 135 KGET----HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190 + + + E+ + D+ T E + + Sbjct: 448 EETVFFNHLAGKVLAIEVLKPTLLKKLTEHEQDDLYETIE------------MPVANVLA 495 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G D + L T+L+ ++ L G + ++L LF + GL Sbjct: 496 KMEITGLKTDASTLVQLGNDFAQRLTELEADIY-LEAGERFNINSPKQLGQILFEKLGLP 554 Query: 251 LEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 T+ +T VL K+ +P +V + R ++ + L++ + DGR+ Sbjct: 555 PIKKTKTGYSTSVEVLEQLKEQSPIVQKVLDYRQ-IAKIQSTYVKGLLDVIQPDGRVHTR 613 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 Q + TGR S QN+P ++ +R Sbjct: 614 YQQ-TLTATGRLSSVDPNLQNIPVRLEEGKK-------------------------IRKA 647 Query: 368 VIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424 + S +G D + +E RVLA ++G++ +AF+TG D++ T + F++ P +V Sbjct: 648 FVPSNSDGYIF-SCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAMKIFHLDSPNEV 706 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T + R K + G++ + Sbjct: 707 TPNMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 732 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + +++ ++ + ++ + Sbjct: 733 ----------NLGISRKQAKEFIDNYFEQYPKIKDYMDKEINFARE-------------- 768 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 N + R D+ R +Q Sbjct: 769 ------------NGYVETIMHRRRYLPDIHAKNF---NVRSFAERTAINSP------IQG 807 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657 + DI+ M+N K +++ VHDE++ + P + + +M + Sbjct: 808 GAADIIKIAMINMQKKLDELHLKTKMLIQVHDELIFDVPADELETIKKVVPEVMQNAVQ- 866 Query: 658 AKGLPLKAEG 667 +PL A+ Sbjct: 867 -LDVPLVADS 875 >gi|3041672|sp|P52026|DPO1_BACST RecName: Full=DNA polymerase I; Short=POL I Length = 876 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 85/665 (12%), Positives = 178/665 (26%), Gaps = 137/665 (20%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82 ++ A + + + L + F+ V Sbjct: 328 HHAPIVGIALA--NERGRFFLRPETALADPKFLAWLGDETKKKT----MFDSKRAAVALK 381 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ L+ A A V K+ + E + + KG Sbjct: 382 WKGIELR-GVVFDLLLAAYLLDPAQAAGDVAAVAKMHQYEAVRSDEAV--YGKGAKRTVP 438 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200 + H + + E+ + + E E + + G VD Sbjct: 439 DEPTLAEHLVRKAAAIWALEE--PLMDELRRNEQDRLLTELEQPLAGILANMEFTGVKVD 496 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + + + +++ + L + ++L T LF + L + T+ + Sbjct: 497 TKRLEQMGAELTEQLQAVERRIYELAGQ-EFNINSPKQLGTVLFDKLQLPVLKKTKTGYS 555 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRT 316 T VL + + R + + L++ ++ G++ ++T Sbjct: 556 TSADVLEKLAPHHEIVEHILHYRQ-LGKLQSTYIEGLLKVVHPVTGKVHTMFNQA-LTQT 613 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKK 375 GR S QN+P + +R + Sbjct: 614 GRLSSVEPNLQNIPIRLEEGRK-------------------------IRQAFVPSEPDWL 648 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 + AD + IE RVLA +A + ++AF G D++ T F+V+ VT + R K + Sbjct: 649 IFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEEDVTANMRRQAKAV 708 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ A Sbjct: 709 NF--------------GIVYGISDYGLAQ------------------------------N 724 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + + V + + + Q +Q G Sbjct: 725 LNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQ---KGYVTTLLH------------- 768 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 R D+ + R +Q + DI+ + M+ Sbjct: 769 ----------RRRYLPDITSRNF---NVRSFAERTAMNTP------IQGSAADIIKKAMI 809 Query: 616 NA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 + + ++L VHDE++ E P + L +M + +PLK + + Sbjct: 810 DLSVRLREERLQARLLLQVHDELILEAPKEEIERLCRLVPEVMEQAVT--LRVPLKVDYH 867 Query: 669 ESKRY 673 + Sbjct: 868 YGPTW 872 >gi|153814488|ref|ZP_01967156.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756] gi|317500531|ref|ZP_07958753.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA] gi|331089370|ref|ZP_08338270.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847982|gb|EDK24900.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756] gi|316898041|gb|EFV20090.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA] gi|330405433|gb|EGG84968.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium 3_1_46FAA] Length = 871 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 87/601 (14%), Positives = 167/601 (27%), Gaps = 144/601 (23%) Query: 87 DIPIHRWICTLVLARSNGL---PSALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECL 142 ++ +V A + V E L ++ E Sbjct: 397 NVKQSSAFDVIVAAYLLNPLKSDYTYEDVAEQYLGIAGGIQAELNVKCCYEAYTAFAAAS 456 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 NK E RLF E E L + + G V+ Sbjct: 457 VLDNKLKEAEMDRLFYE---------------------IEMPLVFTLYEMESAGVKVEAE 495 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + +L+ ++ + + ++L LF + + T+ +T Sbjct: 496 ALKLYGDQLGEQIIQLEHQIYEMAG-EEFNINSPKQLGVILFEKLNMPHAKKTKTGYSTA 554 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + P ++ R ++ + L + DGR+ G + TGR Sbjct: 555 ADVLEKLAEEYPIVSKILEYRQ-LAKLKSTYADGLAVFIGDDGRIHGKFNQ-TVTATGRL 612 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+P + +R + E V A Sbjct: 613 SSTEPNLQNIPVR-------------------------MELGRMIRKVFVPKEDCVFVDA 647 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA +G++ +KA+ D++ T ++ F+ +VT QR K + + Sbjct: 648 DYSQIELRVLAHCSGDEQLIKAYREATDIHRMTASQVFHTPFDEVTDLQRRNAKAVNFGI 707 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y + L+ Sbjct: 708 VYGIS-----SFGLSMDLS---------------------------------------IT 723 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + + + V + L + E E G A+ Sbjct: 724 RKEAAEYIEHYFETYPGVKKF---LDDSVENAKEKGYAVTL------------------- 761 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 GR ++ ++ R +Q + DI+ M++ K Sbjct: 762 ----FGRRRPVPELKSSNFMQRNF---GERVAMNAP------IQGTAADIMKIAMIDVHK 808 Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKR 672 ++L VHDE++ E ++ + M + +PL + + K Sbjct: 809 ELKKRNMKSRMILQVHDELLIEAECSEVDEVKEILRDKMENAVK--LSVPLIVDMHTGKN 866 Query: 673 Y 673 + Sbjct: 867 W 867 >gi|227510537|ref|ZP_03940586.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190189|gb|EEI70256.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 883 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 92/636 (14%), Positives = 192/636 (30%), Gaps = 135/636 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRW-ICTLVLARSNGLPSALK 110 + +K LE++ V N F+ + L I + L+++ + Sbjct: 362 KQVKAILESSTVQK---NV-FDAK--RTYVGLYRSSITLQNVDFDMLLVSYLLNTTNNSN 415 Query: 111 AV---GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 V + ++ K +E + +H + D+ Sbjct: 416 DVGTVAKLHGFANIKTDE----EVYGKGAKKKIDPEAPEFFDHIVHKAKAIDQLHNDMFK 471 Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + + E ++ ++ + G V+ + +++Q + Sbjct: 472 ALDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTIFQEAG 531 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L LF + L + T+ +T VL P V N R S Sbjct: 532 -EEFNIGSPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEKLAPDAPIVQNVLNYRQ-IS 589 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + ++ L++ ++ + T ++TGR S QN+P S Sbjct: 590 KLQSTYIDGLLKVIHKNDSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRSEEGR------- 642 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +R + S E ++ +D + IE RVLA + G++ +AF Sbjct: 643 ------------------LIRQAFVPSHEDWQIWSSDYSQIELRVLASITGDKNMQEAFR 684 Query: 404 TGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 GED++ TT R F + + VT + R K + G++ Sbjct: 685 EGEDIHATTARRIFGLASNDDVTPELRRQAKAVN--------------FGIVYGISDYGL 730 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A+ + + + +++ V + Sbjct: 731 AN------------------------------NTGISRKQAHQFIQRYFEEYPGVKKYTE 760 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 ++ + + + + + R D+ + Sbjct: 761 DIVEFAKN--------------------------HGYVETIAHRRRYLPDIHSRNF---N 791 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPD 638 R +Q + DI+ M+N +A ++L VHDE++ E P+ Sbjct: 792 LRSFAERTAMNTP------IQGSAADIIKIAMINMDEALKPLKTRMLLQVHDELIFEVPN 845 Query: 639 TDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + L +M S +PLK E + K + Sbjct: 846 DEMETVEKLIPKVMDSAIK--LNIPLKVESHWGKTW 879 >gi|224541516|ref|ZP_03682055.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM 15897] gi|224525553|gb|EEF94658.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM 15897] Length = 867 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 96/658 (14%), Positives = 193/658 (29%), Gaps = 135/658 (20%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDI 88 ++ + ++D + + L++ ++ V+ ++I Sbjct: 327 ILGYGI-YNDEQAYFISYENALK-DESFLAYLKDETKKKYGYDIK--SAVIGSRWNGVEI 382 Query: 89 PIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + + + LK V + +E F KG D Sbjct: 383 NGYT-FDLSLASYVLEPAIKEELKYVCTHFDYDGVQYDE-----EVFGKGAKKHIPDDAL 436 Query: 147 KPNHREAWRLFGEYCKGDVTV-TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 H + Y DV + K+ E E + + + G +D+ + Sbjct: 437 LAQHTVSKAKAI-YELKDVVTKELKDKKQYELYEDIELPVTRILGEMEFAGTEIDLDVLK 495 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262 +++ D KL ++ ++ + ++L LF + GL T+ +T Q V Sbjct: 496 EMDEAFDETIEKLSNDIYRISGTT-FNISSPKQLGQVLFEDLGLKGGKKTKTGYSTSQDV 554 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L P V R ++ + L L E + D ++ + + TGR S Sbjct: 555 LEKIIDAHPVVPLVLEYR-MLTKLSSTYLKGLQEQVFPDNKIHTIYKQ-TLTHTGRLSSV 612 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 QN+P S + +R ++ G LV D + Sbjct: 613 DPNLQNIPVRSEEGK-------------------------LIRKAFVSHNGY-LVSFDYS 646 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R+LA MA + AF G+D++ T A F V +VT R+ K + + Sbjct: 647 QIELRILAHMAHVTNLIDAFNQGKDIHRHTAALVFGVKDEEVTPQMRSQAKAVNFGII-- 704 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 G++ + + Sbjct: 705 ------------YGMSEFRLSKDI------------------------------GMSIAE 722 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + + + V +E+ + ++ + Sbjct: 723 ARNFINKYFETYPEVKTYMDEVVEVCKK--------------------------QGYVST 756 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 R + + + ++ +Q DIL M+ KA Sbjct: 757 LLNRKRYIPTINDKNFMVRQQAQRY---------AMNTPIQGTGADILKLAMIEVDKALK 807 Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ + + + S++ M + +PL EG +K + Sbjct: 808 VHHLKSQMILQVHDELIFDVFEDELEEVMSLVKEKMENCIK--MDVPLIVEGNYAKNW 863 >gi|163790757|ref|ZP_02185183.1| DNA polymerase I [Carnobacterium sp. AT7] gi|159873937|gb|EDP68015.1| DNA polymerase I [Carnobacterium sp. AT7] Length = 886 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 82/654 (12%), Positives = 178/654 (27%), Gaps = 125/654 (19%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 G+ D K + + ++ L+ + I Sbjct: 341 ICIGWGDDQQIYIAEPEVVFASDDFKNWAKEKETKKQVFDAKRTYVALRRQ---KVDITS 397 Query: 93 W-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 L+ + K + E E + + Sbjct: 398 ISFDILLASYLLNTKDNSKDLSEVAMEHDYYDVSSDESVYGKGAKIAIPEDKKVTYDHVA 457 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 + K E + + E L + + G V+ + + Sbjct: 458 RKIKAIRILSKQLSD-NLEKNVQTKLFDEMELPLSIVLAEMELTGVKVNDKRLMEMKEEF 516 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK 268 + ++Q + L + ++L LF + G + T+ +T VL K+ Sbjct: 517 AIRLNDIEQRVYELAG-EKFNLNSPKQLGVILFEKMGYPVVKKTKTGYSTAVDVLEQLKE 575 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 P + R ++ + L++ ++ + T ++TGR S QN Sbjct: 576 QAPIVEHILEYRQ-IAKIQSTYIEGLLKVIDKETGKIHTRYMQTIAQTGRLSSVDPNLQN 634 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEAR 387 +P + +R + S EG K+ +D + IE R Sbjct: 635 IPIRLEEGRK-------------------------IRQAFVPSHEGWKIFASDYSQIELR 669 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAK 446 VL ++ ++ +AF G+D++ +T R F ++ P +V+ + R K + Sbjct: 670 VLGHVSNDKLLKEAFIEGQDIHSSTAMRVFGISSPEEVSSEMRRRAKAVNF--------- 720 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ + +R Sbjct: 721 -----GIVYGISDYGLSQ------------------------------NLGISRKEAQRF 745 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + +K+ V ++ + + + R Sbjct: 746 IDTYFEKYPGVKTYMEDIVREAKD--------------------------KGFVETLFHR 779 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KA 620 ++ + R +Q + DI+ M+ K Sbjct: 780 RRYLPEINSRNF---NLRSFAERTAINTP------IQGSAADIIKIAMIKMDERLKESKL 830 Query: 621 GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + ++ +M +PLK + K + Sbjct: 831 KATMLLQVHDELIFEAPEEEIEELKALVVEVMEGAVE--LSVPLKVDSNSGKSW 882 >gi|328464768|gb|EGF36086.1| DNA polymerase I [Lactobacillus helveticus MTCC 5463] Length = 650 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 98/676 (14%), Positives = 207/676 (30%), Gaps = 140/676 (20%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73 L G + + F+ +D D + + +K LE+ + N Sbjct: 93 LEMLGANYHLAPF--VGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV 143 Query: 74 YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 F+ V + + L+ + + +GE L K + Sbjct: 144 -FDLKRTMVAAHRLGIHTHGLDY-DMLLASYLINNENNSNDLGEIAHL--YGDYSVKTDL 199 Query: 131 ARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189 + KG++ D ++ + A + E K + + ++ + E + Sbjct: 200 EVYGKGKSEHIPDDDDELFNHLASKVNAIESLKKTLLEKLKDHEQDALFDTIEIPTARVL 259 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G V+ + L V+ +L+ ++ + ++L LF + GL Sbjct: 260 ARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYGQAG-EKFNLNSPKQLGHILFEKLGL 318 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T+ +T VL K +P ++ + R ++ + L++ + DGR+ Sbjct: 319 PVIKKTKTGYSTAVEVLDQLKTQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHT 377 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 + TGR S QN+P + + +R Sbjct: 378 RYLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRK 411 Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424 + + D + +E RVLA ++G+Q +AF+TG D++ T + F++ P +V Sbjct: 412 AFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEV 471 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T R K + G++ + Sbjct: 472 TPLMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 497 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + +++ ++ + N +A ++ + G A Sbjct: 498 ----------NLGISRKRAQEFIDNYFEQYPQIEDYMN---KAVQEARDKGYAETIMH-- 542 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 R D+ + T R +Q Sbjct: 543 ---------------------RRRYLPDIHAKK---YTVRAFAERTAINSP------IQG 572 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657 + DI+ M+N K +V+ VHDE++ + P + + +M S Sbjct: 573 SAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEVMQSAVK- 631 Query: 658 AKGLPLKAEGYESKRY 673 +PL A+ + Sbjct: 632 -LDVPLIADSGWGHNW 646 >gi|300361188|ref|ZP_07057365.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03] gi|300353807|gb|EFJ69678.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03] Length = 886 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 99/661 (14%), Positives = 205/661 (31%), Gaps = 141/661 (21%) Query: 32 LFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL--- 86 F+ D D V+ Q L++ LE+ + N F+ + L Sbjct: 344 GFSLKVGDK----IYVSKDVVLLQETPLRQMLEDKKIKK---NV-FDIK--RTYVGLHRL 393 Query: 87 DIPIHRWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 DI L+ + + +GE L K + + KG+ D Sbjct: 394 DIDAEGLDYDMLLASYLVNNENNSNDLGEVAHL--YGDYSVKTDLEVYGKGKKKAVPEDD 451 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 H A + E K + + ++ + + E + ++ + G V+ ++ + Sbjct: 452 EFFEHLAAKVVVIEKLKQPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLN 511 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262 L ++ +L+ ++ + ++L LF + L T+ +T V Sbjct: 512 QLGNDFALKLQELEHKIYQQAG-EEFNLNSPKQLGHILFEKLNLPPIKKTKTGYSTSVEV 570 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L K +P ++ + R ++ + L+E + DGR+ + TGR S Sbjct: 571 LEQLKMKSPIVSEILDYRQ-IAKIQNTYVKGLLECIQPDGRIHTRYLQ-TLTATGRLSSV 628 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA--SEGKKLVVAD 380 QN+P + + +R + +G D Sbjct: 629 DPNLQNIPTRTDEGK-------------------------QIRKAFVPSTKDGYIF-SCD 662 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELAL 439 + +E RVLA ++G++ +AF++G D++ T + F++ P +VT R K + Sbjct: 663 YSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNF-- 720 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 G++ + Sbjct: 721 ------------GIVYGISDYGLSK------------------------------NLGIS 738 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + +++ ++ + +A ++ E G A Sbjct: 739 RKQAKTFIDNYFEQYPQIKDYM---DKAIKEAREKGYAETIMH----------------- 778 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 R D+ + R +Q + DI+ M+N K Sbjct: 779 ------RRRYLPDIHSKNF---NVRSFAERTAINSP------IQGSAADIIKIAMINMQK 823 Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672 +VL VHDE++ + P + + +M S + +PL A+ Sbjct: 824 KLDELHLKTKMVLQVHDELIFDVPKAELDTIKKIVPEVMQSAVT--LDVPLIADSNWGHN 881 Query: 673 Y 673 + Sbjct: 882 W 882 >gi|260665506|ref|ZP_05866353.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US] gi|260560774|gb|EEX26751.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US] Length = 885 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 95/668 (14%), Positives = 192/668 (28%), Gaps = 159/668 (23%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEALENTDVTIVAHNSYFERT---VLKA 82 + F+ D+ +D + Q L+ LE+ V N F+ V Sbjct: 339 ADFVGFSLKMGDN----VYVSNDVSLLTKQPLQTLLEDQAVNK---NV-FDLKRTIVGLH 390 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGE------ALKLSSQKMEEGKELIARFCKG 136 + + L+ + + +GE L GK A Sbjct: 391 RLGIKANNINY-DMLLASYLVNNENNSNDLGEICQLYNYYDLQPDVDIYGKGKKAAIPDE 449 Query: 137 ET----HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192 E + + E+ + D+ T E + + + Sbjct: 450 EIFFNHLAGKVLAIEALKPTLLKRLTEHEQDDLYETIE------------MPVANVLAKM 497 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G D + L T+L+ ++ L G + ++L LF + L Sbjct: 498 EITGLKTDASTLVQLGNDFGQRLTELEADIY-LEAGERFNINSPKQLGQILFEKLELPPI 556 Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T+ +T VL K +P +V + R ++ + L++ + DGR+ Q Sbjct: 557 KKTKTGYSTSVEVLEQLKDQSPIVQKVLDYRQ-IAKIQSTYVKGLLDVIQPDGRVHTRYQ 615 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 + TGR S QN+P ++ +R I Sbjct: 616 Q-TLTATGRLSSVDPNLQNIPVRLEEGKK-------------------------IRKAFI 649 Query: 370 A--SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTK 426 +G D + +E RVLA ++G++ +AF+TG D++ T + F++ P +VT Sbjct: 650 PSNKDGYIF-SCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAMKIFHLDSPDEVTP 708 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R K + G++ + Sbjct: 709 NMRRHAKAVNF--------------GIVYGISDYGLSK---------------------- 732 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + + +++ ++ + ++ + Sbjct: 733 --------NLGISRKQAKEFIDNYFEQYPKIKDYMDKEINFARE---------------- 768 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 + R D+ R +Q + Sbjct: 769 ----------KGYVETIMHRRRYLPDIHAKNF---NVRSFAERTAINSP------IQGGA 809 Query: 607 RDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659 DI+ M+N K +++ VHDE++ + P + + +M + Sbjct: 810 ADIIKIAMINMQKKLDELNLKSKMLIQVHDELIFDVPADELETIKKVVPEVMQNAVH--L 867 Query: 660 GLPLKAEG 667 +PL A+ Sbjct: 868 DVPLVADS 875 >gi|4389065|pdb|3BDP|A Chain A, Dna Polymerase IDNA COMPLEX gi|4389072|pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 11 Base Pairs Of Duplex Dna After Addition Of Two Datp Residues gi|4389123|pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 9 Base Pairs Of Duplex Dna Length = 580 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 88/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82 D ++ A + + + L + S F+ V Sbjct: 32 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 85 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ + L+ A + V A KM++ + + Sbjct: 86 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVRAA-----AKMKQYEAVRPDEAVYGKGA-- 137 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196 R P+ + R E+ + + EQ L + + G Sbjct: 138 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 196 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + + + + ++Q + L + ++L LF + L + T+ Sbjct: 197 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 255 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + + R + + L++ + D + T+ Sbjct: 256 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 314 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372 ++TGR S QN+P + +R + SE Sbjct: 315 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 349 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 350 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 409 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ A Sbjct: 410 KAVNF--------------GIVYGISDYGLAQ---------------------------- 427 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + V ++ + G Sbjct: 428 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 472 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R D+ + R +Q + DI+ + Sbjct: 473 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 510 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ + ++L VHDE++ E P + L +M + +PLK Sbjct: 511 AMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 568 Query: 666 EGYESKRY 673 + + + Sbjct: 569 DYHYGSTW 576 >gi|332687082|ref|YP_004456856.1| DNA polymerase I [Melissococcus plutonius ATCC 35311] gi|332371091|dbj|BAK22047.1| DNA polymerase I [Melissococcus plutonius ATCC 35311] Length = 887 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 88/658 (13%), Positives = 180/658 (27%), Gaps = 134/658 (20%) Query: 33 FAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 + + + Q + L + +++ T L + Sbjct: 343 IGIAWGNKQTIYVTENLALFEE--QAFIDWLFDETCQKQVYDAKRTYTALNRYVG-KMQG 399 Query: 91 HRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 L+ A V + + +E + Sbjct: 400 IS-FDILLAAYLLNTNDTNTDIECVARQYGYTDIQSDEA----VYDRGAKKKVPQEKEIF 454 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 NH EY + + S E L + + G VD + Sbjct: 455 YNHLAHKIKAIEYLSEKLAADLVEKNQANLFSEMELPLSRILADMEITGIHVDAHRLEEM 514 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 + ++Q++ + + ++L LF + GL + T+ +T VL Sbjct: 515 QGEFSDQLKAIEQKIYTEAG-EEFNINSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 573 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ P + R ++ + L++ + D ++ ++TGR S Sbjct: 574 QLKERAPIVEDILIYRQ-IAKIQSTYVEGLLKVIQPDHKVHTRYLQ-TLTQTGRLSSVDP 631 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAG 383 QN+P + +R I E + +D + Sbjct: 632 NLQNIPIRLEEGRK-------------------------IRQAFIPREKDWLIYSSDYSQ 666 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQ 442 IE RVLA ++ ++ AF +D++ +T R FN++ P +VT + R K + Sbjct: 667 IELRVLAHISNDEHLKAAFLEQQDIHASTAMRVFNLSSPEEVTPNMRRQAKAVNF----- 721 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 G++ + ++ Sbjct: 722 ---------GIVYGISDYGLSKNLEI------------------------------SRQQ 742 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 ++ + K+ V E+ + + + Sbjct: 743 AQQYIDTYFNKYPSVKTYMEEIVREAKD--------------------------KGYVET 776 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 R +D+ + R +Q + DIL M+ + Sbjct: 777 LYHRRRYLKDINSRN---YNLRSFAERTAINTP------IQGSAADILKIAMIQMDRRLK 827 Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E P + + +M S +PL A+ K + Sbjct: 828 EENIQATMLLQVHDELVFEVPAAELEKLDKIVKEVMEKCVS--LTVPLIADSNWGKTW 883 >gi|300508400|pdb|3HT3|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus V713p Mutant Bound To G:dctp gi|300508401|pdb|3HT3|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus V713p Mutant Bound To G:dctp Length = 579 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 87/668 (13%), Positives = 180/668 (26%), Gaps = 143/668 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82 D ++ A + + + L + S F+ V Sbjct: 31 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 84 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ + L+ A + V A KM++ + + Sbjct: 85 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 136 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196 R P+ + R E+ + + EQ L + + G Sbjct: 137 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 195 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + + + + ++Q + L + ++L LF + L + T+ Sbjct: 196 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 254 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + + R + + L++ + + T+ Sbjct: 255 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPATKKVHTIFNQAL 313 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372 ++TGR S QN+P + +R + SE Sbjct: 314 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 348 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 349 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 408 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ A Sbjct: 409 KAVNF--------------GIPYGISDYGLAQ---------------------------- 426 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + V ++ + G Sbjct: 427 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 471 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R D+ + R +Q + DI+ + Sbjct: 472 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 509 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ + ++L VHDE++ E P + L +M + +PLK Sbjct: 510 AMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 567 Query: 666 EGYESKRY 673 + + + Sbjct: 568 DYHYGSTW 575 >gi|299688943|pdb|3HPO|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus Y714s Mutant Bound To G:t Mismatch Length = 580 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 86/661 (13%), Positives = 178/661 (26%), Gaps = 141/661 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFNLDIP 89 + + + L + S F+ V +++ Sbjct: 37 VGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALKWKGIELX 92 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + L+ A + V A KM++ + + R P+ Sbjct: 93 GVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA---KRAVPD 143 Query: 150 HREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVAL 203 + R E+ + + EQ L + + G VD Sbjct: 144 EPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKR 203 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260 + + + + ++Q + L + ++L LF + L + T+ +T Sbjct: 204 LEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSA 262 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL + + R + + L++ + D + T+ ++TGR S Sbjct: 263 DVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLS 321 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVA 379 QN+P + +R + SE + A Sbjct: 322 STEPNLQNIPIRLEEGRK-------------------------IRQAFVPSESDWLIFAA 356 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA +A + ++AF D++ T F V+ +VT + R K + Sbjct: 357 DYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVN--- 413 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 +G++ A Sbjct: 414 -----------FGIVSGISDYGLAQ------------------------------NLNIS 432 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + + V ++ + G Sbjct: 433 RKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH----------------- 472 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-- 617 R D+ + R +Q + DI+ + M++ Sbjct: 473 ------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKKAMIDLNA 517 Query: 618 ----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672 + ++L VHDE++ E P + L +M + +PLK + + Sbjct: 518 RLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKVDYHYGST 575 Query: 673 Y 673 + Sbjct: 576 W 576 >gi|172058211|ref|YP_001814671.1| DNA polymerase I [Exiguobacterium sibiricum 255-15] gi|171990732|gb|ACB61654.1| DNA polymerase I [Exiguobacterium sibiricum 255-15] Length = 865 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 88/672 (13%), Positives = 180/672 (26%), Gaps = 154/672 (22%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKA 82 Y E+ +I F D ++ ++ +E+ D + ++ L+ Sbjct: 322 YMEE-DIIGFGIATPDQ----IYVASAELVDDPAFRDWIES-DHQKICLDAKQAAFALRK 375 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 + + + + ++ G ++ + Sbjct: 376 H---GLKLTAFDD----------LLLAGYLLNLSGGTTLASIAGHYMLMAPNEEAVLGKG 422 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTI 192 R P Y + +F +++ Q+ + + Sbjct: 423 AKRLAPADDV----LHPYLAEKARMIELLFPKVKEELKANQQFELYETLERPLSGVLAEM 478 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G VDV + + L+Q + + ++L LF + L Sbjct: 479 EWTGIRVDVGTLQEMQHDLAGRLHDLEQLIYGEVG-EEFNINSPKQLGVILFEKMELPAF 537 Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T+ +T VL + L P + R + + L + + DG++ Sbjct: 538 KKTKTGYSTAADVLEKLRPLHPVIDHIMLYR-ELQKLQSTYVEGLQKVIKEDGKIHTRFA 596 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 A +TGR S QN+P + +R + Sbjct: 597 QTIA-QTGRLSSVNPNLQNIPVRIEEGRK-------------------------IRKAFV 630 Query: 370 A-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 G L AD + IE RV+A M+ ++ ++AF D++ T + F VAP VT + Sbjct: 631 PSEPGWSLYAADYSQIELRVMAHMSEDKTLVQAFLDDADIHTQTASSVFGVAPNDVTGNM 690 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ + Sbjct: 691 RRQAKAVNF--------------GIIYGISDYGLSQ------------------------ 712 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + + + ++ + + Sbjct: 713 ------NLNISRKEAQDFIDRYFELFPQIKLFMDAAIEKAR------------------- 747 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 N + R D+ + R +Q + D Sbjct: 748 -------MNGFVETLMNRRRNIPDINSKNF---NLRGFAERTAINTP------IQGSAAD 791 Query: 609 ILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGL 661 I+ + M++ A ++L VHDE++ E PD + L M + Sbjct: 792 IIKKAMLDVHAALEQSPLRARLLLQVHDELIFEAPDEELDALKTLVKQAMEQTVQ--LSV 849 Query: 662 PLKAEGYESKRY 673 PL+ +G + Sbjct: 850 PLRVDGDAGHSW 861 >gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251] gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251] Length = 902 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 95/702 (13%), Positives = 199/702 (28%), Gaps = 167/702 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV- 56 + D ET E+ ++ F+F F++ H + Q Sbjct: 333 IVAFDTETTGLD----------YENDSLVGFSFCFNEDEAYYVPIAHFYLGVGEQISQED 382 Query: 57 ----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110 +K+ + +V HN F+ + + + +++LA +L Sbjct: 383 AKIAIKKIFNS---RVVGHNIKFDLHFVIRFLGEG-ELDIFADSMILAWLINPESALSLD 438 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + E KL KM KE + + A Y D +T Sbjct: 439 KLSE--KLLEHKMITFKE-------------SVKKGETFASVALEEACNYAAEDAYITLR 483 Query: 171 IFKRLEPLS-------------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 ++ + E + G ++ ++ Sbjct: 484 LYYLFLEMLKDQGAEHLIEEAKEVEFPFIKTLLKMEMHGIELNSLFLEQFLAEAKDSLSE 543 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI 274 L +++ L L + ++L LF + GL T+ +T ++VL+S Sbjct: 544 LTKKIYEL-ASLEFNINSTQQLGNVLFEQLGLPTSKKTKTGYSTDEKVLNSLLGEHEIIP 602 Query: 275 QVFNNRMRASRSAVLKLNTLVEA--MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + R + + L++ + + R+ + G + TGR S QN+P Sbjct: 603 YLLEYR-EVYKLYSTYIEPLLKLSQQDKESRIHTSFVQTGTT-TGRLSSKNPNLQNIPTR 660 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + + +R +A EGKKL+ D + IE R+LA Sbjct: 661 TALGTK-------------------------IREAFVAPEGKKLIGIDYSQIELRLLAHF 695 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 ++ ++AF +D+++ T F + +R + K + L Y G K + Sbjct: 696 TQDRVLVEAFMQDKDIHMQTAIALFG---EEDAPLKRNVAKTVNFGLLYGMGQKKLSET- 751 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 L + T + +++ R + + E + + + + Sbjct: 752 ----LKITTAEAKEIIERYFSSFPSVKSYFRSIVDFSKEAGYVETLLKR------RRYFD 801 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 S + +I G A K Sbjct: 802 YESASPMFRAAYEREAVNSIFQGSASDIIKL----------------------------- 832 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 +N + + E + ++ + Sbjct: 833 ------SMNKIHKLIEDEKLNA-----------------KMLLQIHDE-----------L 858 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + E ++ ++M + +PLKA ++ Sbjct: 859 IFEVDTSEAEILGEKFKNIMQNIMP--LNIPLKASMKIGDKW 898 >gi|45656484|ref|YP_000570.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599719|gb|AAS69207.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 917 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 92/700 (13%), Positives = 197/700 (28%), Gaps = 154/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54 L +D ET SP ++ +F + ++ + Sbjct: 340 RVLSVDTETTSPNP----------AMAELVGISFSNQEKTGFYVSVKNNASLFQDKSLNL 389 Query: 55 QVLKEAL---ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SA 108 ++E L ++ V V N ++ VL+ + + T++ + Sbjct: 390 DEVREHLGPVLSSQVPKVGQNIKYDLIVLENH-GFVLNNIQ-FDTMLASYVLRPEGRRHN 447 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + + + L E + K EY D VT Sbjct: 448 MDDLAKEF------------LNYNTITYEDLVGTGKKKKELTDIDPEQVAEYAAEDADVT 495 Query: 169 REIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ E L + + G +DV L + D E L Sbjct: 496 FRLYQIFRKSIKDSGVEPILREMEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRHL 555 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQ 275 + E+ G + ++L+ LF + L + T+ +T VL P + Sbjct: 556 ESEIHRQAGGP-FNIASTKELQKILFDDLKLRIVKKTQTGFSTDHEVLEELAGEHPIIEK 614 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + R + ++ ++ L + +N GR+ + A+ TGR S QN+P R Sbjct: 615 LLDYR-KYTKLKSTYVDALPKMVNPKTGRIHTSYNQTIAA-TGRLSSTDPNLQNIPIRDR 672 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMA 393 +R +++ D + IE R++A ++ Sbjct: 673 EGR-------------------------LLRKGFTVDSNDYEILSLDYSQIELRIMAHIS 707 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + L+A+ G D++ T A + V VT + R KV+ ++ Y Sbjct: 708 KDPAMLEAYNHGLDIHKRTAAALYGVPEIDVTHEMRDKAKVVNFSVIYGVTP-----YGL 762 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + L + ++ +++ M E ++ G Sbjct: 763 SRNLRIPRDEAKSFIERYMTQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRP--------- 813 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 N H++ ++ + + ++ + + Sbjct: 814 ----VTDINSTHKSAKEAAKRIAINSPIQGTSADMI-----------------KIAMIKI 852 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + + +R ++ +V VH Sbjct: 853 HEDIEKKHYKSRM---------------------------LLQVHDE---LVFEVH---- 878 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + + M + S LP+ EG + Sbjct: 879 ---KKEKDDFKASMKKHMETAMS--LDLPIVVEGKFGVNW 913 >gi|297566628|ref|YP_003685600.1| DNA polymerase I [Meiothermus silvanus DSM 9946] gi|296851077|gb|ADH64092.1| DNA polymerase I [Meiothermus silvanus DSM 9946] Length = 846 Score = 303 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 105/657 (15%), Positives = 192/657 (29%), Gaps = 158/657 (24%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 + A +D V P + LK E + + + + VL LD Sbjct: 333 AKLTGLAAAWD-GKVY-----RGPTDLEELKGFHELSALA-----AK-DLAVLAGKEGLD 380 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 IP ++LA ++ E + + + Sbjct: 381 IPPG--DDPMLLAYLYDPANS---------------EPASTVRRYGAGDLVADPVSHAQA 423 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 W +GD ++ E+ L + + RG +DV L Sbjct: 424 AW--LLWETLSARTQGD----ERLWWLYR---EVEKPLAAVLAQMECRGVALDVPYLQEL 474 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQRV 262 ++ + E L+ E+ L + ++L+ L+ E GL +T V Sbjct: 475 SEELGKELGYLEAEIHRLAGHP-FNVNSRDQLEAILYDELGLQAGGKKTTTGKRSTAASV 533 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSG 321 L + L P ++ + R ++ L+ L + ++ GRL A+ TGR S Sbjct: 534 LEEMRSLHPIVGKILDYR-ELAKLKGTYLDPLPKLIHPKTGRLHTRFNQTVAA-TGRLSS 591 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 QN+P + + +R +A +G LVVAD Sbjct: 592 SDPNLQNIPVRTEVGRK-------------------------IRKAFVAEKGYCLVVADY 626 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R+LA ++G++ K F D++ T A F + P +V R K + Sbjct: 627 SQIELRILAHLSGDENLKKVFTERRDIHTQTAAWMFGLEPEKVDPQHRRAAKTIN----- 681 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 G++ + E Sbjct: 682 ---------FGVLYGMS------------------------------AHRLSGELGISYA 702 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 + + + +V + + + E G Sbjct: 703 EASGFIERYFASYPKVRLW---IEKTLAEGRERGYVETM--------------------- 738 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT--- 618 GR D+ + R VQ + D++ M+ Sbjct: 739 --FGRRRFVADLESKN---RAIKEAAERMAFNMP------VQGTAADLMKLAMVKLYPKL 787 Query: 619 -KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 + G +VL VHDE+V E P+ + + +M + W +PL+ + Sbjct: 788 KERGAHLVLQVHDELVVEAPEPLAKEVAEVMCEVMQNV--WELDVPLEVGVGIGHNW 842 >gi|182417808|ref|ZP_02949122.1| DNA polymerase I [Clostridium butyricum 5521] gi|237667599|ref|ZP_04527583.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378271|gb|EDT75803.1| DNA polymerase I [Clostridium butyricum 5521] gi|237655947|gb|EEP53503.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262] Length = 956 Score = 303 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 98/631 (15%), Positives = 192/631 (30%), Gaps = 141/631 (22%) Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 ++LK +EN V V H+ T L N+ + T + A + + Sbjct: 452 IELLKNVMENDKVKKVIHDGKNLVTFLNKN-NITVKEFD-FDTAIAAYLLDSAQSKYNLT 509 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 E ++ K +G +E + P + E K D +++ Sbjct: 510 ELIEKYLNKEIDG--------IESENEGILGSYIPKLYMILKSNIEKEKMD-----KLYY 556 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 E L ++ ++ G+ ++ ++ L D E + +E+ L + Sbjct: 557 ------EVEHPLIFVLSSMESIGFNINQSMLDELKIKFDSEIQRTQKEIYEL-ADEEFNV 609 Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF + L + T+ +T Q VL ++ R ++ + Sbjct: 610 SSPKQLGKILFEKLDLPIIKKTKTGYSTNQEVLEKLLDKHEIIPKIMYYRQ-ITKISSTY 668 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L ++ DGR+ + TGR S QN+P E Sbjct: 669 VEGLKNVIDEDGRIHSNFNQTVTT-TGRLSSTDPNLQNIPIRHELGRE------------ 715 Query: 351 TSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R I EG LV D + IE RVLA +AG++ + AF+ D++ Sbjct: 716 -------------IRKVFIPLQEGDTLVSCDYSQIELRVLAHIAGDENMIDAFKHHSDIH 762 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + F V VT R+ K + + G++ + + +K Sbjct: 763 TKTASEVFKVPVEDVTSLMRSRAKAVNFGIV--------------YGISAFSLSQDLKIP 808 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A + + +++ ++ L Sbjct: 809 KA------------------------------EAQEYMNIYFERYPKIKSY---LENIVS 835 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + E G + R ++ + + R Sbjct: 836 EAEEKGYVLTILN-----------------------RRRFIPEINASNKIVKAL---GER 869 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643 +Q + DI+ M+N K ++L VHDE++ + + Sbjct: 870 LAMNAP------IQGSAADIIKIAMINVYNKLKESKMQSKLILQVHDELILNVKENEFEE 923 Query: 644 ASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 + M + + G L + K + Sbjct: 924 VKKIVVDEMENAIKLSVG--LDVDINSGKTW 952 >gi|122920421|pdb|2HHW|A Chain A, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active Site, In The Closed Conformation gi|122920422|pdb|2HHW|D Chain D, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active Site, In The Closed Conformation Length = 580 Score = 303 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 87/668 (13%), Positives = 180/668 (26%), Gaps = 143/668 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82 D ++ A + + + L + S F+ V Sbjct: 32 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 85 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ + L+ A + V A KM++ + + Sbjct: 86 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 137 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196 R P+ + R E+ + + EQ L + + G Sbjct: 138 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 196 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + + + + ++Q + L + ++L LF + L + T+ Sbjct: 197 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 255 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + + R + + L++ + + T+ Sbjct: 256 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPATKKVHTIFNQAL 314 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372 ++TGR S QN+P + +R + SE Sbjct: 315 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 349 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 350 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 409 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ A Sbjct: 410 KAVNY--------------GIVYGISDYGLAQ---------------------------- 427 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + V ++ + G Sbjct: 428 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 472 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R D+ + R +Q + DI+ + Sbjct: 473 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 510 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ + ++L VHDE++ E P + L +M + +PLK Sbjct: 511 AMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 568 Query: 666 EGYESKRY 673 + + + Sbjct: 569 DYHYGSTW 576 >gi|262184186|ref|ZP_06043607.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] Length = 835 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 89/629 (14%), Positives = 174/629 (27%), Gaps = 148/629 (23%) Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLP---SALKAVGEALKL 118 ++D H + +L I + T + A AL V + Sbjct: 332 SSDAPKYLHEAKAAWHMLA---GRGIELRGIAHDTALAAYLLRPGQRTYALTDVSQRHL- 387 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA--WRLFGEYCKGDVTVTREIFKRLE 176 + E G + +T ++ + Sbjct: 388 ------------------QKSLGAATEQLSILDENPLVDQAGAIMELAAELTAQLQEIDS 429 Query: 177 PLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + EL + + G VD + T + + ++ L + Sbjct: 430 FELYTDLELPLVSILAQMEAAGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLN 489 Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLK 290 ++L+ LF + T+ +T + + P + Sbjct: 490 SPKQLQAVLFDTFDMPKTKKTKTGYSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTT- 548 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L++ + DGR+ T + TGR S QN+P + + Sbjct: 549 LEGLIKTIQPDGRIHTTFNQ-TVTSTGRLSSTEPNLQNIPVRTEAGR------------- 594 Query: 351 TSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS + EG L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 595 ------------QIRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLH 642 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 ++ F+V +VT + R K M L GL+ + Sbjct: 643 NYVGSKVFDVPVDEVTPELRRRVKAMSYGLV--------------YGLSAFGLSQQ---- 684 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + +++ ++ V L + Sbjct: 685 --------------------------LGIPAREAKEIMESYFERFGGVKRY---LDEVVV 715 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 Q ++G GR ++ ++ R Sbjct: 716 QARKDGYTSTV-----------------------FGRRRYLPELNSDN---RVARENAER 749 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ M+ KA ++L VHDE+V E + + Sbjct: 750 AALNAP------IQGTAADIIKVAMIRVDKALEALASRVLLQVHDELVVEVAPGEAEDVQ 803 Query: 646 MLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + M +PL+ K + Sbjct: 804 RILEREMDKAIE--LTVPLEVSVGVGKNW 830 >gi|256843650|ref|ZP_05549138.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN] gi|293381755|ref|ZP_06627732.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1] gi|256615070|gb|EEU20271.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN] gi|290921675|gb|EFD98700.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1] Length = 887 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 99/676 (14%), Positives = 205/676 (30%), Gaps = 140/676 (20%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73 L G + + F+ D D + + +K LE+ + N Sbjct: 330 LEMLGANYHLAPF--VGFSLKITDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV 380 Query: 74 YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 F+ V ++ + L+ + + +GE L K + Sbjct: 381 -FDLKRTMVAAHRLDIHTHGLDY-DMLLASYLINNENNSNDLGEIAHL--YGDYSVKTDL 436 Query: 131 ARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189 + KG++ D ++ + A + E K + + ++ + + E + Sbjct: 437 EVYGKGKSEHIPDDDDELFNHLASKINAIESLKKPLLEKLKDHEQDDLFETIEIPTARVL 496 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G V+ + L V+ +L+ ++ S + ++L LF + GL Sbjct: 497 ARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQAG-EKFNLNSPKQLGHILFEKLGL 555 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T+ +T VL K +P ++ + R ++ + L++ + SDGR+ Sbjct: 556 PPIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQSDGRVHT 614 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 + TGR S QN+P + + +R Sbjct: 615 RYLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRK 648 Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424 + + D + +E RVLA ++G+Q +AF+TG D++ T + F++ P +V Sbjct: 649 AFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDEV 708 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T R K + G++ + Sbjct: 709 TPLMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 734 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + +++ ++ E ++ Q + Sbjct: 735 ----------NLGISRKRAQEFIDNYFEQYPQIREYMDKAVQTARE-------------- 770 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 R D+ + T R +Q Sbjct: 771 ------------KGYAETIMHRRRYLPDIHAKKF---TVRSFAERTAINSP------IQG 809 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657 + DI+ M+N K IV+ VHDE++ + P + + +M S Sbjct: 810 SAADIIKIAMINMQKKLDELHLKTKIVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK- 868 Query: 658 AKGLPLKAEGYESKRY 673 +PL A+ + Sbjct: 869 -LDVPLIADSGWGHNW 883 >gi|227877046|ref|ZP_03995135.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|256850116|ref|ZP_05555546.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] gi|262047415|ref|ZP_06020372.1| DNA polymerase [Lactobacillus crispatus MV-3A-US] gi|227863364|gb|EEJ70794.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|256713088|gb|EEU28079.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] gi|260572389|gb|EEX28952.1| DNA polymerase [Lactobacillus crispatus MV-3A-US] Length = 887 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 99/676 (14%), Positives = 205/676 (30%), Gaps = 140/676 (20%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73 L G + + F+ D D + + +K LE+ + N Sbjct: 330 LEMLGANYHLAPF--VGFSLKITDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV 380 Query: 74 YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 F+ V ++ + L+ + + +GE L K + Sbjct: 381 -FDLKRTMVAAHRLDIHTHGLDY-DMLLASYLINNENNSNDLGEIAHL--YGDYSVKTDL 436 Query: 131 ARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189 + KG++ D ++ + A + E K + + ++ + + E + Sbjct: 437 EVYGKGKSEHIPDDDDELFNHLASKINAIESLKKPLLEKLKDHEQDDLFETIEIPTARVL 496 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G V+ + L V+ +L+ ++ S + ++L LF + GL Sbjct: 497 ARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQAG-EKFNLNSPKQLGHILFEKLGL 555 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T+ +T VL K +P ++ + R ++ + L++ + SDGR+ Sbjct: 556 PPIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQSDGRVHT 614 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 + TGR S QN+P + + +R Sbjct: 615 RYLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRK 648 Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424 + + D + +E RVLA ++G+Q +AF+TG D++ T + F++ P +V Sbjct: 649 AFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDEV 708 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T R K + G++ + Sbjct: 709 TPLMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 734 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + +++ ++ E ++ Q + Sbjct: 735 ----------NLGISRKRAQEFIDNYFEQYPQIREYMDKAVQTARE-------------- 770 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 R D+ + T R +Q Sbjct: 771 ------------KGYAETIMHRRRYLPDIHAKKF---TVRSFAERTAINSP------IQG 809 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657 + DI+ M+N K IV+ VHDE++ + P + + +M S Sbjct: 810 SAADIIKIAMINMQKKLDELHLKTKIVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK- 868 Query: 658 AKGLPLKAEGYESKRY 673 +PL A+ + Sbjct: 869 -LDVPLIADSGWGHNW 883 >gi|299688922|pdb|3HP6|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus F710y Mutant Bound To G:t Mismatch gi|299688923|pdb|3HP6|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus F710y Mutant Bound To G:t Mismatch Length = 580 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 87/668 (13%), Positives = 180/668 (26%), Gaps = 143/668 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82 D ++ A + + + L + S F+ V Sbjct: 32 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 85 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ + L+ A + V A KM++ + + Sbjct: 86 WKGIELXGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 137 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196 R P+ + R E+ + + EQ L + + G Sbjct: 138 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 196 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + + + + ++Q + L + ++L LF + L + T+ Sbjct: 197 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 255 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + + R + + L++ + + T+ Sbjct: 256 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPATKKVHTIFNQAL 314 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372 ++TGR S QN+P + +R + SE Sbjct: 315 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 349 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 350 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 409 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ A Sbjct: 410 KAVNY--------------GIVYGISDYGLAQ---------------------------- 427 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + V ++ + G Sbjct: 428 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 472 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R D+ + R +Q + DI+ + Sbjct: 473 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 510 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ + ++L VHDE++ E P + L +M + +PLK Sbjct: 511 AMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 568 Query: 666 EGYESKRY 673 + + + Sbjct: 569 DYHYGSTW 576 >gi|323466097|gb|ADX69784.1| DNA polymerase I [Lactobacillus helveticus H10] Length = 887 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 98/676 (14%), Positives = 207/676 (30%), Gaps = 140/676 (20%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73 L G + D + F+ +D D + + +K LE+ + N Sbjct: 330 LEMLGANYHLADF--VGFSLKINDK----IYVSRDVDLLEEDNIKHILEDEKIKK---NV 380 Query: 74 YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 F+ V + + L+ + + +GE L K + Sbjct: 381 -FDLKRSMVGAHRLGIHTHGLDY-DMLLASYLVNNENNSNDLGEIAHL--YGDYSVKTDL 436 Query: 131 ARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189 + KG++ D ++ + A + E K + + ++ + + E + Sbjct: 437 EVYGKGKSEHIPDDDDELFNHLASKVNAIESLKKTLLEKLKDHEQDDLFDTIEIPTARVL 496 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G V+ + L V+ L++++ + ++L LF + GL Sbjct: 497 AKMEINGMKVEASTLIQLQNEFAVKLQDLEKKIYQQAG-EEFNLNSPKQLGHILFEKLGL 555 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T+ +T VL K +P ++ + R ++ + L++ + DGR+ Sbjct: 556 PVLKKTKTGYSTSVEVLDQLKTQSPIVKEILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHT 614 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 + TGR S QN+P + + +R Sbjct: 615 RYLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRK 648 Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424 + + D + +E RVLA ++G+ +AF+TG D++ T + F++ P +V Sbjct: 649 AFVPSDPDGYIFSCDYSQVELRVLAHVSGDVHMQEAFKTGYDIHSHTAMKIFHLDSPDKV 708 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T R K + G++ + Sbjct: 709 TPLMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 734 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + +++ ++ + +A ++ E G A Sbjct: 735 ----------NLGISRKQAKEFIDNYFEQYPQIKDYM---DKAVQEAREKGYAETIMH-- 779 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 R D+ + T R +Q Sbjct: 780 ---------------------RRRYLPDIHAKK---YTVRAFAERTAINSP------IQG 809 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657 + DI+ M+N K +V+ VHDE++ + P + + +M S Sbjct: 810 SAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK- 868 Query: 658 AKGLPLKAEGYESKRY 673 +PL A+ + Sbjct: 869 -LDVPLIADSGWGHNW 883 >gi|122920458|pdb|2HVH|A Chain A, Ddctp:o6meg Pair In The Polymerase Active Site (0 Position) gi|122920459|pdb|2HVH|D Chain D, Ddctp:o6meg Pair In The Polymerase Active Site (0 Position) gi|122920465|pdb|2HVI|A Chain A, Ddctp:g Pair In The Polymerase Active Site (0 Position) gi|122920466|pdb|2HVI|D Chain D, Ddctp:g Pair In The Polymerase Active Site (0 Position) gi|266618524|pdb|3EZ5|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I With Duplex Dna , Dctp, And Zinc (Closed Form). gi|266618525|pdb|3EZ5|D Chain D, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I With Duplex Dna , Dctp, And Zinc (Closed Form) Length = 580 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 87/668 (13%), Positives = 180/668 (26%), Gaps = 143/668 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82 D ++ A + + + L + S F+ V Sbjct: 32 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 85 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 +++ + L+ A + V A KM++ + + Sbjct: 86 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 137 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196 R P+ + R E+ + + EQ L + + G Sbjct: 138 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 196 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + + + + ++Q + L + ++L LF + L + T+ Sbjct: 197 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 255 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + + R + + L++ + + T+ Sbjct: 256 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPATKKVHTIFNQAL 314 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372 ++TGR S QN+P + +R + SE Sbjct: 315 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 349 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 350 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 409 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ A Sbjct: 410 KAVNY--------------GIVYGISDYGLAQ---------------------------- 427 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + V ++ + G Sbjct: 428 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 472 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R D+ + R +Q + DI+ + Sbjct: 473 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 510 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ + ++L VHDE++ E P + L +M + +PLK Sbjct: 511 AMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 568 Query: 666 EGYESKRY 673 + + + Sbjct: 569 DYHYGSTW 576 >gi|1405438|emb|CAA67184.1| DNA-dependent DNA polymerase [Caldicellulosiruptor bescii DSM 6725] Length = 850 Score = 303 bits (776), Expect = 7e-80, Method: Composition-based stats. Identities = 84/629 (13%), Positives = 184/629 (29%), Gaps = 144/629 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGE 114 ++E L++ V ++ + NL+ I ++ + + Sbjct: 350 IEEILKSDTVK-----IMYDLKNIFHQLNLEDTNNIKNCEDVMIASYVLDSTRS------ 398 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + +L + + I K + + + D+ + +++ Sbjct: 399 SYELETLFVSYLNTDIEAVKKDKKIVSVVLLKRLWDELLR-------LIDLNSCQFLYES 451 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 +E + L + + G+ VD + ++ + KL+ ++ + + Sbjct: 452 IE------RPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIAG-EWFNIN 504 Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF + L + T+ +T VL + + RM ++ Sbjct: 505 SPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMY-TKILTTYC 563 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++A+N T + TGR + QN+P + Sbjct: 564 QGLLQAINPSSGRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGK-------------- 609 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R + G L+ AD + IE R+LA ++ ++ + AF+ D++ Sbjct: 610 -----------LIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQ 658 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V A VT + R+ K + + G++ Sbjct: 659 TAAEVFGVDIADVTPEMRSQAKAVNFGIV--------------YGISD------------ 692 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 A + + +++ +V E + + Sbjct: 693 ------------------YGLARDIKISRKEAAEFINKYFERYPKVKEYLDNTVKFARD- 733 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 N ++ R +D+ + R Sbjct: 734 -------------------------NGFVLTLFNRKRYIKDIKSTN---RNLRGYAERIA 765 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645 +Q DI+ M+ + I+L VHDE++ E P ++ Sbjct: 766 MNSP------IQGSPADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVK 819 Query: 646 MLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + M + +PL E E + Sbjct: 820 EIVKREMENAVR--LKVPLVVEVKEGLNW 846 >gi|325685808|gb|EGD27881.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 889 Score = 303 bits (776), Expect = 7e-80, Method: Composition-based stats. Identities = 102/679 (15%), Positives = 199/679 (29%), Gaps = 144/679 (21%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF 75 L G + D FA D P LK LE++ V N F Sbjct: 331 LAMFGDNYHLADFA--GFALKIGGETFVSRDVFLLQESP--LKGMLEDSAVQK---NV-F 382 Query: 76 ERTVLKA----CFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 + LK + L I L+ + +GE + + K + Sbjct: 383 D---LKRTTYGLYRLGIKAESLTFDLLLASYLVDNEKNSNDLGEL--VQGYDYYDLKTDL 437 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--EQELWYL 188 + KG+ + D + A + D + +++ + E + Sbjct: 438 EVYGKGKNAKIPADDAVFFNHLAGKTAAIAALKDSLL-KQLKDHEQDDLYDSIELPTARV 496 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G V + L V +L++++ + ++L LF + G Sbjct: 497 LAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAG-EEFNLNSPKQLGVILFEKLG 555 Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+ +T VL+ K+ +P + R S+ + L++ ++ Sbjct: 556 LPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQ-ISKIQSTYVKGLLDVIDKRDGRI 614 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 T + TGR S QN+P + + +R Sbjct: 615 HTRYLQTLTATGRLSSVDPNLQNIPARTEEGK-------------------------QIR 649 Query: 366 SCVIA--SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422 + +G + D + IE RVLA ++ + +AF+TG D++ T + F+++ Sbjct: 650 KAFVPSSPDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVD 708 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT QR K + G++ + + Sbjct: 709 EVTSLQRRRAKAVNF--------------GIVYGISDYGLSKNLDI-------------- 740 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + + +++ + +A + E G A Sbjct: 741 ----------------SRKQAKEFIDEYFEQYPGIQAYM---DRAVKDAREKGYAETIMH 781 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 R D+ R + Sbjct: 782 -----------------------RRRYLPDIHAKNF---NVRSFAERTAINSP------I 809 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655 Q + DI+ M+N K +V+ VHDE++ + P + + +M + Sbjct: 810 QGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAV 869 Query: 656 SWAKGLPLKAE-GYESKRY 673 +PL A+ G+ Y Sbjct: 870 K--LDVPLVADAGWGHDWY 886 >gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus thermophilus] gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector pLED-HB] Length = 834 Score = 303 bits (775), Expect = 7e-80, Method: Composition-based stats. Identities = 96/610 (15%), Positives = 182/610 (29%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + VL + LD+ ++LA + + V + + L++ Sbjct: 357 DLAVLASREGLDLVPG--DDPMLLAYLLDPSNTTPEGVARRYGGEWTEDAAHRALLSERL 414 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 RN E ++ +E S + + Sbjct: 415 H---------RNLLKRLEGEEKL-----------LWLYHEVEKPLS------RVLAHMEA 448 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-LED 253 G DVA L+ + E +L++E+ L + ++L+ LF E L L Sbjct: 449 TGVRRDVAYLQALSLELAEEIRRLEEEVFRLAGHP-FNLNSRDQLERVLFDELRLPALGK 507 Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 + +T VL + ++ P ++ +R ++ ++ L ++ GRL Sbjct: 508 TQKTGKRSTSAAVLEALREAHPIVEKILQHR-ELTKLKNTYVDPLPSLVHPRTGRLHTRF 566 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 567 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 600 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 +A G LV D + IE RVLA ++G++ ++ F+ G+D++ T + F V P V Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 661 RRAAKTVNF--------------GVLYGMS------------------------------ 676 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + Q +V + + E+ + G Sbjct: 677 AHRLSQELAIPYEEAVAFIERYFQSFPKVRAW---IEKTLEEGRKRGYVETL-------- 725 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 726 ---------------FGRRRYVPDLNAR---VKSVREAAERMAFNMP------VQGTAAD 761 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE++ E P + L M A +PL Sbjct: 762 LMKLAMVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA--VPL 819 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 820 EVEVGMGEDW 829 >gi|1097211|prf||2113329A DNA polymerase Length = 834 Score = 303 bits (775), Expect = 7e-80, Method: Composition-based stats. Identities = 96/610 (15%), Positives = 182/610 (29%), Gaps = 149/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + VL + LD+ ++LA + + V + + L++ Sbjct: 357 DLAVLASREGLDLVPG--DDPMLLAYLLDPSNTTPEGVARRYGGEWTEDAAHRALLSERL 414 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 RN E ++ +E S + + Sbjct: 415 H---------RNLLKRLEGEEKL-----------LWLYHEVEKPLS------RVLAHMEA 448 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-LED 253 G DVA L+ + E +L++E+ L + ++L+ LF E L L Sbjct: 449 TGVRRDVAYLQALSLELAEEIRRLEEEVFRLAGHP-FNLNSRDQLERVLFDELRLPALGK 507 Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 + +T VL + ++ P ++ +R ++ ++ L ++ GRL Sbjct: 508 TQKTGKRSTSAAVLEALREAHPIVEKILQHR-ELTKLKNTYVDPLPSLVHPRTGRLHTRF 566 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 567 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 600 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 +A G LV D + IE RVLA ++G++ ++ F+ G+D++ T + F V P V Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 661 RRAAKTVNF--------------GVLYGMS------------------------------ 676 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + Q +V + + E+ + G Sbjct: 677 AHRLSQELAIPYEEAVAFIERYFQSFPKVRAW---IEKTLEEGRKRGYVETL-------- 725 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR D+ + + R VQ + D Sbjct: 726 ---------------FGRRRYVPDLNAR---VKSVREAAERMAFNMP------VQGTAAD 761 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 ++ M+ + G ++L VHDE++ E P + L M A +PL Sbjct: 762 LMKLAMVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA--VPL 819 Query: 664 KAEGYESKRY 673 + E + + Sbjct: 820 EVEVGMGEDW 829 >gi|313679946|ref|YP_004057685.1| DNA polymerase I [Oceanithermus profundus DSM 14977] gi|313152661|gb|ADR36512.1| DNA polymerase I [Oceanithermus profundus DSM 14977] Length = 839 Score = 303 bits (775), Expect = 8e-80, Method: Composition-based stats. Identities = 95/610 (15%), Positives = 175/610 (28%), Gaps = 148/610 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + TV + L+LA + + + + R Sbjct: 362 DLTVWALREGVRARPG--DDPLLLAYLYDPSNNQPASTVRRYGVG--------DWTDRAR 411 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 R + E ++ E+ L + + Sbjct: 412 DRALAARWLWREMSDRLEGEE--------------RLWWLYR---EVERPLQGVLAAMER 454 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL----H 250 RG +DV L+Q + E +L+ E+ L + ++L+T L+ E GL Sbjct: 455 RGVKLDVDYLLALSQELAAELERLEAEIHRLAGHP-FNLNSRDQLETVLYDELGLAAGRR 513 Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308 + +T VL + + P ++ R ++ L+ L + ++ GRL Sbjct: 514 TAKTGKRSTSASVLETLRGAHPIVEKILQYR-ELAKLKGTYLDPLPKLVHPRTGRLHTRF 572 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 G + TGR S QN+P + +R Sbjct: 573 HQTG-TATGRLSSSDPNLQNIPIRTEIGRR-------------------------IRKGF 606 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 +A EG LVVAD + IE RVLA ++G++ ++ F+ G D++ T A F V +V + Sbjct: 607 VAGEGYLLVVADYSQIELRVLAHLSGDENLIRIFQEGRDIHTQTAAWMFGVEDVEVDPFR 666 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ Sbjct: 667 RRAAKTIN--------------FGVLYGMS------------------------------ 682 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + E + + + V + + + Sbjct: 683 AHRLSRELGIDYGEAQAFIDRYFDSYPGVRAFMERVLEEARE------------------ 724 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + GR ++ + R VQ + D Sbjct: 725 --------RGYVETLFGRRRHVPELLSK---ARNVREAAERVAFNMP------VQGTAAD 767 Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPL 663 ++ M+ G ++L VHDE+V E P+ A ++ M W +PL Sbjct: 768 LIKLAMVKLAPRLEPLGAALLLQVHDELVVEAPEERAAETARVVKATMEEA--WRLDVPL 825 Query: 664 KAEGYESKRY 673 E + + Sbjct: 826 AVEVGVGRDW 835 >gi|160892692|ref|ZP_02073482.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50] gi|156865733|gb|EDO59164.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50] Length = 878 Score = 303 bits (775), Expect = 9e-80, Method: Composition-based stats. Identities = 111/699 (15%), Positives = 194/699 (27%), Gaps = 159/699 (22%) Query: 8 FETRSPID---------LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---PVMPQ 55 ET ID K G+ +D + A D V + ++ + + Sbjct: 302 LETTEQIDGFFADKMKNTHKIGLYPIRKDGTLFGLAAAISDKDVFILSNLNGMEHDRLTE 361 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNGLP---SAL 109 + + + LK F D + V A + Sbjct: 362 NIVSVTRDG--------MQIDILDLKEALSVFPFDESDTKVHDIGVAAYLLNPMEDVYSY 413 Query: 110 KAVGEALK---LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 A+ L S+K GK+ + F A++ Y GD+ Sbjct: 414 DAIARDYLGATLPSEKELVGKDELNLFSFTNETFRKLF--------AYKALIPYLAGDLL 465 Query: 167 VT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 + E + + E Y + RG VD + + +L E+ Sbjct: 466 MERLEKQEMFTLYNEIEMPTVYTLYDMEHRGIRVDRKALDDYSVKLQSRIDELHTEIIG- 524 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMR 282 G + ++L LF + GL T+ +T VL K P + R Sbjct: 525 YAGKEFNINSPKQLGVILFEDMGLSGGKKTKTGYSTSVDVLEKIKNDHPIIPAILEYRQ- 583 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ L ++ DGR+ GT + TGR S QN+P Sbjct: 584 LTKLNSTYAQGLTAYISEDGRIHGTFNQ-TITATGRISSTDPNLQNIPMKLELGR----- 637 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R I +G V AD + IE RVLA ++ +Q AF Sbjct: 638 --------------------LIRKAFIPEDGYVFVDADYSQIELRVLAHLSEDQVMQNAF 677 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 D++ TT + F+V QVT QR K + G++ Sbjct: 678 LNHVDIHATTASEVFDVPIDQVTSLQRRNAKAVNF--------------GIVYGIS---- 719 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + + + + + + Sbjct: 720 --------------------------AFGLSEDLGISRKEAADYIEKYFATYKNIKSF-- 751 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 L + E+ +G GR ++ ++ Sbjct: 752 -LDRQVEEAKADGVVRTM-----------------------FGRIRPVPELRSSNFM--- 784 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 T R +Q + DI+ M ++L +HDE++ ET Sbjct: 785 TRSFGERVAMNSP------IQGTAADIIKIAMFRVNMELKKRGLKSRLILQIHDELLVET 838 Query: 637 PDTDEFNASMLYHLMTSNPSWAKG--LPLKAEGYESKRY 673 + ++ +M A +PL+ E + Sbjct: 839 AKDE---VDIVKEIMEKEMMGAADMAVPLEIGISEGDNW 874 >gi|239637989|ref|ZP_04678950.1| DNA polymerase I [Staphylococcus warneri L37603] gi|239596552|gb|EEQ79088.1| DNA polymerase I [Staphylococcus warneri L37603] Length = 876 Score = 303 bits (775), Expect = 9e-80, Method: Composition-based stats. Identities = 100/678 (14%), Positives = 203/678 (29%), Gaps = 135/678 (19%) Query: 14 IDLTKCGICKYAEDVC-----VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68 DL + I ED ++ F +H V + + L LEN + Sbjct: 312 NDLDEATIHFELEDSNYLKDNILKFGLYTGEHHV-VINADEIKQF-SDLVNWLENPNTAK 369 Query: 69 VAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG 126 +++ + V+ ++DI + ++ + + V +S Sbjct: 370 TVYDAKKTY---VVAHRLDIDIQNIQ-FDVMLSSYIIDPSRTIDDVNSV--VSLYGQHYV 423 Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW 186 ++ +A + KG+ H D H + K ++ + + + L+ E L Sbjct: 424 QDNVAIYGKGKKHHIPEDEILNKHVASIIEAVSASKSEMQNQLKEYNQESLLADLELPLA 483 Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + + + G DV + + + + L + + + ++L LF Sbjct: 484 EILSEMEEIGIYTDVNDLQHMEKEIQEKLDVLIKNIHEAAG-EEFNINSPKQLGVVLFET 542 Query: 247 TGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 L + T+ +T VL + P + R S+ + L + ++ D R Sbjct: 543 LELPVIKKTKTGYSTAVDVLEQLQGQHPIIDYILEYRQ-LSKLQSTYVEGLQKVISEDNR 601 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + A +TGR S QN+P + Sbjct: 602 IHTRFNQTLA-QTGRLSSVDPNLQNIPIRLEEGRK------------------------- 635 Query: 364 VRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R S ++ AD + IE RVLA + ++ +AF G D++ T + F+V Sbjct: 636 IRKAFKPTSTDSVILSADYSQIELRVLAHITQDESMKEAFINGHDIHTATAMKVFDVGAD 695 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +V R K + + Y + L + + + + + + Sbjct: 696 EVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLDSFPGVKQYM 750 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + ++ + + Sbjct: 751 SDIVKDAKAQDFVETL-----------------------------------------LHR 769 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 RR +P + + R+ +NT + Sbjct: 770 RRYIPDITSRNFNLRSF---------------AERTAMNTP------------------I 796 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNP 655 Q + DI+ M+ K ++L VHDE++ E P + + S +M S Sbjct: 797 QGSAADIIKLAMVQFNKEVQHTKYHAKLLLQVHDELIFEVPKDEVESFSQFVEDIMESAL 856 Query: 656 SWAKGLPLKAEGYESKRY 673 +PLK E + Sbjct: 857 E--LDVPLKVESSYGATW 872 >gi|167754596|ref|ZP_02426723.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402] gi|237733768|ref|ZP_04564249.1| DNA polymerase I [Mollicutes bacterium D7] gi|167705428|gb|EDS20007.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402] gi|229383106|gb|EEO33197.1| DNA polymerase I [Coprobacillus sp. D7] Length = 870 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 96/657 (14%), Positives = 190/657 (28%), Gaps = 133/657 (20%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 ++ FA ++D D + K + + + ++ L+I Sbjct: 330 IVGFAV-YNDSEAYFI-GTEDALNCTNFKNFISDKKIEKYGYDIKKSINA-AKWHGLEIE 386 Query: 90 IHRWICTLVLARSNGLPSALK--AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + + + + +V E + +E + KG + Sbjct: 387 -NYVFDLQLASYILNPSLKDEIRSVCEYYEYYDVFYDE-----EVYGKGAKKKVPETSRV 440 Query: 148 PNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 H Y D + + E E + + + +G VD + Sbjct: 441 AEHLIKQAKAI-YILKDQAIEKLNNENQFELYKDVEMPVAKILARMEFQGAKVDSVVLKQ 499 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263 L + E L++E+ +L + ++L LF + GL T+ +T +L Sbjct: 500 LEEQFGREINILEKEIHTL-ANREFNIASPKQLGEVLFEDLGLPNGKKTKTGYSTSVDIL 558 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + K + P +V R S+ + L + + DG++ ++TGR S Sbjct: 559 NKLKDIHPIIDKVLKYR-TLSKLYSTYIIGLQDQVFIDGKIHTIYNQA-LTQTGRLSSTD 616 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+P + + +R + LV D + Sbjct: 617 PNLQNIPVKTPEGK-------------------------LIRKAFVPEYDY-LVSFDYSQ 650 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA +AG + +KAF +D++ T + F V QV R K + Sbjct: 651 IELRVLAHLAGVKSLIKAFNEDKDIHRHTASEIFRVPEEQVDSTMRRNAKAVNF------ 704 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G++ A V Sbjct: 705 --------GIIYGMSDFGLAEQV------------------------------GVSVGEA 726 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 K + + + + + + +NG Sbjct: 727 REFIKRYFENYPEIKLYMDSNIDFCK---KNGYVTTMLN--------------------- 762 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------ 617 R R++ Y+ + + +Q + DI+ M+ Sbjct: 763 --RKRFIREINEKN-YMRQEFGK--------RLAMNSPIQGSAADIIKVAMIKVDELLKK 811 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 + ++L VHDE++ + + + MT+ + LKAEG + + Sbjct: 812 HQLKSKMILQVHDELIFDVYQEELQEVMEIVAKGMTTAIK--MDVELKAEGSYAVNW 866 >gi|238855720|ref|ZP_04646016.1| DNA polymerase I [Lactobacillus jensenii 269-3] gi|282934757|ref|ZP_06339997.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] gi|238831666|gb|EEQ24007.1| DNA polymerase I [Lactobacillus jensenii 269-3] gi|281301168|gb|EFA93472.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] Length = 885 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 95/668 (14%), Positives = 192/668 (28%), Gaps = 159/668 (23%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEALENTDVTIVAHNSYFERT---VLKA 82 + F+ D+ +D + Q L+ LE+ V N F+ V Sbjct: 339 ADFVGFSLKMGDN----VYVSNDVSLLTKQPLQTLLEDQAVNK---NV-FDLKRTIVGLH 390 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGE------ALKLSSQKMEEGKELIARFCKG 136 + + L+ + + +GE L GK A Sbjct: 391 RLGIKANNINY-DMLLASYLVNNENNSNDLGEICQLYNYYDLQPDVDIYGKGKKAAIPDE 449 Query: 137 ET----HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192 E + + E+ + D+ T E + + + Sbjct: 450 EIFFNHLAGKVLAIEALKPTLLKRLTEHEQDDLYETIE------------MPVANVLAKM 497 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G D + L T+L+ ++ L G + ++L LF + L Sbjct: 498 EITGLKTDASTLVQLGNDFGQRLTELEADIY-LEAGERFNINSPKQLGQILFEKLELPPI 556 Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T+ +T VL K +P +V + R ++ + L++ + DGR+ Q Sbjct: 557 KKTKTGYSTSVEVLEQLKDQSPIVQKVLDYRQ-IAKIQSTYVKGLLDVIQPDGRVHTRYQ 615 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 + TGR S QN+P ++ +R I Sbjct: 616 Q-TLTATGRLSSVDPNLQNIPVRLEEGKK-------------------------IRKAFI 649 Query: 370 A--SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTK 426 +G D + +E RVLA ++G++ +AF+TG D++ T + F++ P +VT Sbjct: 650 PSNKDGYIF-SCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAMKIFHLDSPDEVTT 708 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R K + G++ + Sbjct: 709 NMRRHAKAVNF--------------GIVYGISDYGLSK---------------------- 732 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + + +++ ++ + ++ + Sbjct: 733 --------NLGISRKQAKEFIDNYFEQYPKIKDYMDKEINFARE---------------- 768 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 + R D+ R +Q + Sbjct: 769 ----------KGYVETIMHRRRYLPDIHAKNF---NVRSFAERTAINSP------IQGGA 809 Query: 607 RDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659 DI+ M+N K +++ VHDE++ + P + + +M + Sbjct: 810 ADIIKIAMINMQKKLDELNLKSKMLIQVHDELIFDVPADELETIKKVVPEVMQNAVH--L 867 Query: 660 GLPLKAEG 667 +PL A+ Sbjct: 868 DVPLVADS 875 >gi|227524689|ref|ZP_03954738.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290] gi|227088173|gb|EEI23485.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290] Length = 883 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 93/636 (14%), Positives = 192/636 (30%), Gaps = 135/636 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRW-ICTLVLARSNGLPSALK 110 + +K LE++ V N F+ + L I + L+++ + Sbjct: 362 KQVKAILESSTVQK---NV-FDAK--RTYVGLYRSSITLQNVDFDMLLVSYLLNTTNNSN 415 Query: 111 AV---GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 V + ++ K +E + +H + D+ Sbjct: 416 DVGTVAKLHGFANIKTDE----EVYGKGAKKKIDPEVPEFFDHIVHKAKAIDQLHNDMFK 471 Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + + E ++ ++ + G V+ + +++Q + Sbjct: 472 ALDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTIFQEAG 531 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L LF + L + T+ +T VL P V N R S Sbjct: 532 -EEFNIGSPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEKLAPDAPIVQNVLNYRQ-IS 589 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + ++ L++ ++ + T ++TGR S QN+P S Sbjct: 590 KLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRSEEGR------- 642 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +R I S E ++ +D + IE RVLA + G++ +AF Sbjct: 643 ------------------LIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNMQEAFR 684 Query: 404 TGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 GED++ TT R F + + VT + R K + G++ Sbjct: 685 EGEDIHATTARRIFGLASNDDVTPELRRQAKAVN--------------FGIVYGISDYGL 730 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A+ + + + +++ V + Sbjct: 731 AN------------------------------NTGISRKQAHQFIQRYFEEYPGVKKYTE 760 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 ++ + + + + + R D+ + Sbjct: 761 DIVEFAKN--------------------------HGYVETIAHRRRYLPDIHSRNF---N 791 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPD 638 R +Q + DI+ M+N +A ++L VHDE++ E P+ Sbjct: 792 LRSFAERTAMNTP------IQGSAADIIKIAMINMDEALKPLKTRMLLQVHDELIFEVPN 845 Query: 639 TDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + L +M S +PLK E + K + Sbjct: 846 DEMETVEKLIPKVMDSAIR--LNIPLKVESHWGKTW 879 >gi|266624221|ref|ZP_06117156.1| DNA polymerase I [Clostridium hathewayi DSM 13479] gi|288863943|gb|EFC96241.1| DNA polymerase I [Clostridium hathewayi DSM 13479] Length = 598 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 89/597 (14%), Positives = 162/597 (27%), Gaps = 129/597 (21%) Query: 92 RWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 V + + G LI + E + Sbjct: 112 PLFDAGVAGYLLNPLKDTYDYDDLARDYLGLTVPSRAG--LIGKQSVKMALETDEKK--A 167 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL--DQTINDRGYCVDVALAHT 206 + + + D +T E+ + + E+ + + G + Sbjct: 168 FTCVCYMGYIAFMSAD-RLTEELKRTEMYSLFTDIEMPLIYSLFHMEQVGIKAERVRLKE 226 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVL 263 + V+ L+Q++ T + ++L LF L T++ T VL Sbjct: 227 YGDRLKVQIAVLEQKIYEETG-ETFNINSPKQLGEVLFDHMKLPNGKKTKSGYSTAADVL 285 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 P + + R ++ L + D R+ GT + TGR S Sbjct: 286 DKLAPDYPVVQMILDYRQ-LTKLNSTYAEGLAVYIGPDERIHGTFNQ-TITATGRISSTE 343 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+P E +R + +G + AD + Sbjct: 344 PNLQNIPVRMELGRE-------------------------IRKIFVPEDGYVFIDADYSQ 378 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA M+G++ + A+ ED++ T + F+ +VT QR K + + Y Sbjct: 379 IELRVLAHMSGDERLIGAYRHAEDIHAITASEVFHTPLDEVTPLQRRNAKAVNFGIVYGI 438 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + GL+ Sbjct: 439 S-----SFGLSEGLS---------------------------------------ISRKEA 454 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + V E L + E G A+ Sbjct: 455 TEYINKYFETYPGVKEF---LDRLVADAKETGYAVSM----------------------- 488 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620 GR ++ + + R +Q + DI+ M+ +A Sbjct: 489 FGRRRPVPELKSANFMQRSF---GERVAMNSP------IQGTAADIMKIAMIRVDRALKA 539 Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 IVL VHDE++ ET + +L M + L+ E + Sbjct: 540 KGLKSRIVLQVHDELLIETRKDEVEAVKALLVDEMKHAAD--LSVSLEVEANVGDSW 594 >gi|259503619|ref|ZP_05746521.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041] gi|259168443|gb|EEW52938.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041] Length = 885 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 90/663 (13%), Positives = 191/663 (28%), Gaps = 145/663 (21%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 F D L + + LK+ LE+ V N+ + L +D+ Sbjct: 341 GFVIGDGKTWLVSRDAELLKQDPLKKLLESPAVAKNVFNAKAQIVGLHR-LGIDLRNVD- 398 Query: 94 ICTLVLARSNGLPSALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 L+ + +G+ AL+ E + + Sbjct: 399 FDLLLASYLLNTNDNSNDLGQVALEHDYH----------EVATDEEVYGKGAKRAIPADD 448 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVA 202 ++F + ++ L Q L + + G V+ Sbjct: 449 --QVFYTHLAQKARAIDDLRAPLFKKLDDNQQTPLYTDIEVPLTRVLAAMEITGIKVNAQ 506 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + ++ ++ + + ++L LF + L + T+ +T Sbjct: 507 TLKDMGSKLTERLADIESQIYAAAG-EEFNINSTKQLGHILFEKLKLPVIKKTKTGYSTA 565 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL P + R ++ + L++ ++S + T ++TGR Sbjct: 566 VDVLEKLADQAPIVEDILQYRQ-IAKLQSTYITGLLKVIHSSDQKIHTRYLQTLTQTGRL 624 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVV 378 S QN+P +R + S G ++ Sbjct: 625 SSVDPNLQNIPVRLPEGR-------------------------LIRKAFVPSHAGWQIFS 659 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMEL 437 +D + +E RVLA + G++ + F+ GED++ +T R F++ ++ ++ R K + Sbjct: 660 SDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAVNF 719 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y ++++ + +E+ + + EH + Sbjct: 720 GIVYGIS-----DYGLAQRIHVSRAQAHEFIQNYFKEFPGVKKYIDDTIAFAREHGYVET 774 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 +RR +P ++ K Sbjct: 775 IT-----------------------------------------HRRRYLPDIHAKSFSRR 793 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R+ +NT +Q + DI+ M+ Sbjct: 794 SF---------------AERTAMNT------------------PIQGSAADIIKIAMIRM 820 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYES 670 + ++L +HDE+V E P + L +M S +PLK E Sbjct: 821 KEEIKQRQLQARMLLQIHDELVFEAPAEEIPVLQKLVPQVMDSAVQ--LNVPLKVESKVG 878 Query: 671 KRY 673 + Sbjct: 879 DTW 881 >gi|18310976|ref|NP_562910.1| DNA polymerase I [Clostridium perfringens str. 13] gi|18145658|dbj|BAB81700.1| DNA polymerase I [Clostridium perfringens str. 13] Length = 866 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 89/649 (13%), Positives = 183/649 (28%), Gaps = 144/649 (22%) Query: 39 DHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 D L + V + + KE EN + ++ T LK +D Sbjct: 344 DEKNYLINFKELVKEEENIKSFKEFFENEAILKNGYSIKNALTALKK-LGIDFNGLA-FD 401 Query: 96 TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 + A GE LS K + + + + + + Sbjct: 402 CELAAYLIDSSK-----GEYTLLSLINNYLSKFPNVKEGEEDLVGITFMKELTLVLKKKI 456 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 + + + + + ++ G+ V+ + L+ E Sbjct: 457 EEEKMERLMYDIELPLET--------------VLSSMESIGFKVNKDILDELSIKFKREL 502 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272 + +E+ L + ++L LF + L + T+ +T VL K P Sbjct: 503 EETQKEIFEL-ADEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPI 561 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 ++ + S+ + L +++DG + T + TGR S QN+P Sbjct: 562 IEKI-TYFRQLSKIYSTYVEGLKAVIDTDGSIHSTFNQTVTT-TGRLSSTEPNLQNIPIK 619 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391 E +R I EG L+ AD + IE RVLA Sbjct: 620 YEMGRE-------------------------IRKVFIPKKEGDLLISADYSQIELRVLAH 654 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++G++ + AF D++ T + F V +VT R+ K + + Sbjct: 655 ISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIV----------- 703 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G+ + + + + + Sbjct: 704 ---YGIGDFSLSQ------------------------------DLNISRKEAKEYMDIYF 730 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 +++ ++ E +++ + G + R Sbjct: 731 ERYPKIKEYISKV---IHEAQTKGYVLTMLN-----------------------RRRYIP 764 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625 + + + R +Q + DI+ M+N ++ Sbjct: 765 EANASNKIVKAL---GERLAMNAP------IQGTAADIIKLAMVNVYNKLKELNLNSKLI 815 Query: 626 LTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 L VHDE++ + L M + +PL + + + Sbjct: 816 LQVHDELIINVVKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDW 862 >gi|182624402|ref|ZP_02952186.1| DNA polymerase I [Clostridium perfringens D str. JGS1721] gi|177910405|gb|EDT72782.1| DNA polymerase I [Clostridium perfringens D str. JGS1721] Length = 866 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 88/649 (13%), Positives = 183/649 (28%), Gaps = 144/649 (22%) Query: 39 DHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 D L + V + + KE EN D+ ++ T LK +D Sbjct: 344 DEKNYLINFKELVKEEENIKAFKEFFENEDILKNGYSIKNALTALKK-LGIDFNGLA-FD 401 Query: 96 TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 + A + + K KE + + + + + Sbjct: 402 CELAAYLIDSSKGEYNLLSLINNYLSKFPNVKE-----GEEDLVGISFMKELTLVLKKKI 456 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 + + + + + ++ G+ V+ + L+ E Sbjct: 457 EEEKMERLMYDIELPLET--------------VLSSMESIGFKVNKDILDELSIKFKREL 502 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272 + +E+ L + ++L LF + L + T+ +T VL K P Sbjct: 503 EETQKEIFEL-ADEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPI 561 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 ++ + S+ + L +++DG + T + TGR S QN+P Sbjct: 562 IEKI-TYFRQLSKIYSTYVEGLKSVIDTDGSIHSTFNQTVTT-TGRLSSTEPNLQNIPIK 619 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391 E +R I EG L+ AD + IE RVLA Sbjct: 620 YEMGRE-------------------------IRKVFIPKKEGDLLISADYSQIELRVLAH 654 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++G++ + AF D++ T + F V +VT R+ K + + Sbjct: 655 ISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIV----------- 703 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G+ + + + + + Sbjct: 704 ---YGIGDFSLSQ------------------------------DLNISRKEAKEYMDIYF 730 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 +++ ++ E +++ + G + R Sbjct: 731 ERYPKIKEYISKV---IHEAQTKGYVLTMLN-----------------------RRRYIP 764 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625 + + + R +Q + DI+ M+N ++ Sbjct: 765 EANASNKIVKAL---GERLAMNAP------IQGTAADIIKLAMVNVYNKLKELNLNSKLI 815 Query: 626 LTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 L VHDE++ + L M + +PL + + + Sbjct: 816 LQVHDELIINVVKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDW 862 >gi|238853764|ref|ZP_04644130.1| DNA polymerase I [Lactobacillus gasseri 202-4] gi|282851273|ref|ZP_06260638.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1] gi|311110324|ref|ZP_07711721.1| DNA polymerase I [Lactobacillus gasseri MV-22] gi|238833573|gb|EEQ25844.1| DNA polymerase I [Lactobacillus gasseri 202-4] gi|282557241|gb|EFB62838.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1] gi|311065478|gb|EFQ45818.1| DNA polymerase I [Lactobacillus gasseri MV-22] Length = 886 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 100/661 (15%), Positives = 203/661 (30%), Gaps = 141/661 (21%) Query: 32 LFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL--- 86 F+ D D V+ Q L++ LE+ + N F+ + L Sbjct: 344 GFSLKVSDK----IYVSKDVVLLQEAPLRQMLEDKKIKK---NV-FDIK--RTYVGLHRL 393 Query: 87 DIPIHRWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 DI L+ + + +GE L K + + KG+ D Sbjct: 394 DIDAEGLDYDMLLASYLVNNENNSNDLGEVAHLYDD--YSVKTDLEVYGKGKKQAVPEDD 451 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 H A E K + + ++ + + E + ++ + G V+ ++ + Sbjct: 452 EFFEHLAAKVAVIEKLKQPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLN 511 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262 L V+ +L+ ++ + ++L LF + L T+ +T V Sbjct: 512 QLGNDFAVKLQELEHKIYQQAG-EEFNLNSPKQLGHILFEKLNLPPIKKTKTGYSTSVEV 570 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L K +P ++ + R ++ + L+E + D R+ + TGR S Sbjct: 571 LEQLKMKSPIVSEILDYRQ-IAKIQNTYVKGLLECIQPDSRIHTRYLQ-TLTATGRLSSV 628 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA--SEGKKLVVAD 380 QN+P + + +R + +G D Sbjct: 629 DPNLQNIPTRTDEGK-------------------------QIRKAFVPSTKDGYIF-SCD 662 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELAL 439 + +E RVLA ++G++ +AF++G D++ T + F++ P +VT R K + Sbjct: 663 YSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNF-- 720 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 G++ + Sbjct: 721 ------------GIVYGISDYGLSK------------------------------NLGIS 738 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + +++ ++ + +A ++ ENG A Sbjct: 739 RKQAKTFIDNYFEQYPQIKDYM---DKAIKKARENGYAETIMH----------------- 778 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 R D+ + R +Q + DI+ M+N K Sbjct: 779 ------RRRYLPDIHSKNF---NVRSFAERTAINSP------IQGSAADIIKIAMINMQK 823 Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672 +VL VHDE++ + P + + +M S +PL A+ Sbjct: 824 KLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIADSNWGHN 881 Query: 673 Y 673 + Sbjct: 882 W 882 >gi|168208695|ref|ZP_02634320.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626] gi|170713068|gb|EDT25250.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626] Length = 866 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 90/649 (13%), Positives = 184/649 (28%), Gaps = 144/649 (22%) Query: 39 DHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 D L + V + + KE EN D+ ++ T LK +D Sbjct: 344 DEKNYLINFKELVKEEENIKSFKEFFENEDILKNGYSIKNALTALKK-LGIDFNGLA-FD 401 Query: 96 TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 + A GE LS K + + + + + + Sbjct: 402 CELAAYLIDSSK-----GEYTLLSLINNYLSKFPNVKEGEEDLVGISFMKELTLVLKKKI 456 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 + + + + + ++ G+ V+ + L+ E Sbjct: 457 EEEKMERLMYDIELPLET--------------VLSSMESIGFKVNKNILDELSIKFKREL 502 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272 + +E+ L + ++L LF + L + T+ +T VL K P Sbjct: 503 EETQKEIFEL-ADEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPI 561 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 ++ + S+ + L +++DG + T + TGR S QN+P Sbjct: 562 IEKI-TYFRQLSKIYSTYVEGLKSVIDTDGSIHSTFNQTVTT-TGRLSSTEPNLQNIPIK 619 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391 E +R I EG L+ AD + IE RVLA Sbjct: 620 YEMGRE-------------------------IRKVFIPKKEGDLLISADYSQIELRVLAH 654 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++G++ + AF D++ T + F V +VT R+ K + + Sbjct: 655 ISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIV----------- 703 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G+ + + + + + Sbjct: 704 ---YGIGDFSLSQ------------------------------DLNISRKEAKEYMDIYF 730 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 +++ ++ E +++ + G + R Sbjct: 731 ERYPKIKEYISKV---IHEAQTKGYVLTMLN-----------------------RRRYIP 764 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625 + + + R +Q + DI+ M+N ++ Sbjct: 765 EANASNKIVKAL---GERLAMNAP------IQGTAADIIKLAMVNVYNKLKELNLNSKLI 815 Query: 626 LTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 L VHDE++ + L M + +PL + + + Sbjct: 816 LQVHDELIINVVKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDW 862 >gi|58337813|ref|YP_194398.1| DNA polymerase I [Lactobacillus acidophilus NCFM] gi|227904462|ref|ZP_04022267.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796] gi|58255130|gb|AAV43367.1| DNA polymerase I [Lactobacillus acidophilus NCFM] gi|227867837|gb|EEJ75258.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796] Length = 886 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 101/672 (15%), Positives = 204/672 (30%), Gaps = 133/672 (19%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73 L G + F+ D D + Q LK+ LEN + + Sbjct: 330 LEMLGDNYHLAPFE--GFSLKVGDK----VYVSKDIALLQEKPLKDILENRKIQKDVFDL 383 Query: 74 YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133 TV ++ + + L+ + +GE L + K + + Sbjct: 384 KR-MTVGLHRLDVIVEGLNY-DMLLASYLVNNEKNSNDLGEIAHLYDE--YSIKTDLEVY 439 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193 KG+ D+ H A E K ++ + ++ + + E + + Sbjct: 440 GKGKKQAIPEDKEFFKHLAAKVCVIEKLKPELLKQLKEHEQDDLFETIEIPTARVLAKME 499 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G V+ + L V+ +L+ ++ + ++L LF + L + Sbjct: 500 INGIKVEASTLIELQNEFAVKLKELEDKIYKQAG-EEFNLNSPKQLGHILFEKLNLPVLK 558 Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+ +T VL K +P ++ + R ++ + L++ + DGR+ Sbjct: 559 KTKTGYSTSVEVLDQLKTQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQRDGRVHTRYLQ 617 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 + TGR S QN+P + + +R + Sbjct: 618 -TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRKAFVP 651 Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQ 428 + D + +E RVLA ++G+Q +AF+TG D++ T R F++ P +VT Sbjct: 652 SEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHAHTAMRIFHLDSPDEVTPLM 711 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + G++ + Sbjct: 712 RRHAKAVNF--------------GIVYGISDYGLSK------------------------ 733 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + + +++ ++ + +A ++ E G A Sbjct: 734 ------NLGISRKRAKEFIDNYFEQYPQIKDYM---DKAVQEAREKGYAETIMH------ 778 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 R D+ + T R +Q + D Sbjct: 779 -----------------RRRYLPDIHAKKF---TVRSFAERTAINSP------IQGSAAD 812 Query: 609 ILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGL 661 I+ M+N K +V+ VHDE++ + P + + +M S + Sbjct: 813 IIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEIMQSAVK--LDV 870 Query: 662 PLKAEGYESKRY 673 PL A+ + Sbjct: 871 PLIADSGWGHNW 882 >gi|24216324|ref|NP_713805.1| DNA polymerase I [Leptospira interrogans serovar Lai str. 56601] gi|24197598|gb|AAN50823.1|AE011518_2 DNA polymerase I [Leptospira interrogans serovar Lai str. 56601] Length = 917 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 92/700 (13%), Positives = 196/700 (28%), Gaps = 154/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54 L +D ET SP ++ +F + ++ + Sbjct: 340 RVLSVDTETTSPNP----------AMAELVGISFSNQEKTGFYVSVKNNASLFQDKSLNL 389 Query: 55 QVLKEAL---ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SA 108 ++E L ++ V V N ++ VL+ + + T++ + Sbjct: 390 DEVREHLGPVLSSQVPKVGQNIKYDLIVLENH-GFVLNNIQ-FDTMLASYVLRPEGRRHN 447 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + + + L E + K EY D VT Sbjct: 448 MDDLAKEF------------LNYNTITYEDLVGTGKKKKELTDIDPEQVAEYAAEDADVT 495 Query: 169 REIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ E L + + G +DV L + D E L Sbjct: 496 FRLYQIFRKSIKDSGVEPILREMEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRHL 555 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQ 275 + E+ G + ++L+ LF L + T+ +T VL P + Sbjct: 556 ESEIHRQAGGP-FNIASTKELQKILFDNLKLRIVKKTQTGFSTDHEVLEELVGEHPIIEK 614 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + R + ++ ++ L + +N GR+ + A+ TGR S QN+P R Sbjct: 615 LLDYR-KYTKLKSTYVDALPKMVNPKTGRIHTSYNQTIAA-TGRLSSTDPNLQNIPIRDR 672 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMA 393 +R +++ D + IE R++A ++ Sbjct: 673 EGR-------------------------LLRKGFTVDSNDYEILSLDYSQIELRIMAHIS 707 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + L+A+ G D++ T A + V VT + R KV+ ++ Y Sbjct: 708 KDPAMLEAYNHGLDIHKRTAAALYGVPETDVTHEMRDKAKVVNFSVIYGVTP-----YGL 762 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + L + ++ +++ M E ++ G Sbjct: 763 SRNLRIPRDEAKSFIERYMTQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRP--------- 813 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 N H++ ++ + + ++ + + Sbjct: 814 ----VTDINSTHKSAKEAAKRIAINSPIQGTSADMI-----------------KIAMIKI 852 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + + +R ++ +V VH Sbjct: 853 HEDIEKKHYKSRM---------------------------LLQVHDE---LVFEVH---- 878 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + + M + S LP+ EG + Sbjct: 879 ---KKEKDDFKASMKKHMETAMS--LDLPIVVEGKFGVNW 913 >gi|300811971|ref|ZP_07092429.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497050|gb|EFK32114.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 887 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 102/679 (15%), Positives = 199/679 (29%), Gaps = 144/679 (21%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF 75 L G + D FA D P LK LE++ V N F Sbjct: 329 LAMFGDNYHLADFA--GFALKIGGETFVSRDVFLLQESP--LKGMLEDSAVQK---NV-F 380 Query: 76 ERTVLKA----CFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 + LK + L I L+ + +GE + + K + Sbjct: 381 D---LKRTTYGLYRLGIKAESLSFDLLLASYLVDNEKNSNDLGEL--VQGYDYFDLKTDL 435 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--EQELWYL 188 + KG+ + D + A + D + +++ + E + Sbjct: 436 EVYGKGKNAKIPADDAVFFNHLAGKTAAIAALKDSLL-KQLKDHEQDDLYDSIELPTARV 494 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G V + L V +L++++ + ++L LF + G Sbjct: 495 LAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAG-EEFNLNSPKQLGVILFEKLG 553 Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+ +T VL+ K+ +P + R S+ + L++ ++ Sbjct: 554 LPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQ-ISKIQSTYVKGLLDVIDERDGRI 612 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 T + TGR S QN+P + + +R Sbjct: 613 HTRYLQTLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIR 647 Query: 366 SCVIA--SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422 + +G + D + IE RVLA ++ + +AF+TG D++ T + F+++ Sbjct: 648 KAFVPSSPDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVD 706 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT QR K + G++ + + Sbjct: 707 EVTSLQRRRAKAVNF--------------GIVYGISDYGLSKNLDI-------------- 738 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + + +++ + +A + E G A Sbjct: 739 ----------------SRKQAKEFIDEYFEQYPGIQAYM---DRAVKDAREKGYAETIMH 779 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 R D+ R + Sbjct: 780 -----------------------RRRYLPDIHAKNF---NVRSFAERTAINSP------I 807 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655 Q + DI+ M+N K +V+ VHDE++ + P + + +M + Sbjct: 808 QGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAV 867 Query: 656 SWAKGLPLKAE-GYESKRY 673 +PL A+ G+ Y Sbjct: 868 K--LDVPLVADAGWGHDWY 884 >gi|116630048|ref|YP_815220.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323] gi|116095630|gb|ABJ60782.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323] Length = 896 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 100/661 (15%), Positives = 203/661 (30%), Gaps = 141/661 (21%) Query: 32 LFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL--- 86 F+ D D V+ Q L++ LE+ + N F+ + L Sbjct: 354 GFSLKVSDK----IYVSKDVVLLQEAPLRQMLEDKKIKK---NV-FDIK--RTYVGLHRL 403 Query: 87 DIPIHRWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 DI L+ + + +GE L K + + KG+ D Sbjct: 404 DIDAEGLDYDMLLASYLVNNENNSNDLGEVAHLYDD--YSVKTDLEVYGKGKKQAVPEDD 461 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 H A E K + + ++ + + E + ++ + G V+ ++ + Sbjct: 462 EFFEHLAAKVAVIEKLKQPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLN 521 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262 L V+ +L+ ++ + ++L LF + L T+ +T V Sbjct: 522 QLGNDFAVKLQELEHKIYQQAG-EEFNLNSPKQLGHILFEKLNLPPIKKTKTGYSTSVEV 580 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L K +P ++ + R ++ + L+E + D R+ + TGR S Sbjct: 581 LEQLKMKSPIVSEILDYRQ-IAKIQNTYVKGLLECIQPDSRIHTRYLQ-TLTATGRLSSV 638 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA--SEGKKLVVAD 380 QN+P + + +R + +G D Sbjct: 639 DPNLQNIPTRTDEGK-------------------------QIRKAFVPSTKDGYIF-SCD 672 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELAL 439 + +E RVLA ++G++ +AF++G D++ T + F++ P +VT R K + Sbjct: 673 YSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNF-- 730 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 G++ + Sbjct: 731 ------------GIVYGISDYGLSK------------------------------NLGIS 748 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + +++ ++ + +A ++ ENG A Sbjct: 749 RKQAKTFIDNYFEQYPQIKDYM---DKAIKKARENGYAETIMH----------------- 788 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 R D+ + R +Q + DI+ M+N K Sbjct: 789 ------RRRYLPDIHSKNF---NVRSFAERTAINSP------IQGSAADIIKIAMINMQK 833 Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672 +VL VHDE++ + P + + +M S +PL A+ Sbjct: 834 KLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIADSNWGHN 891 Query: 673 Y 673 + Sbjct: 892 W 892 >gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1] Length = 830 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 95/609 (15%), Positives = 177/609 (29%), Gaps = 147/609 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + VL + + ++LA + + V Sbjct: 353 DLAVLALREGIALAPG--DDPMLLAYLLDPSNTAPEGVARRYG----------------- 393 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 + + + E E+ L + + Sbjct: 394 ------GEWTEEAGERALLSERLYAALLERLKGEERLLWLYE---EVEKPLSRVLAHMEA 444 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250 G +DVA L+ V+ E +L++E+ L + ++L+ LF E GL Sbjct: 445 TGVRLDVAYLKALSLEVEAELRRLEEEVHRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 503 Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 E + +T VL + ++ P ++ R S+ ++ L ++ T Sbjct: 504 TEKTGKRSTSAAVLEALREAHPIVDRILQYR-ELSKLKGTYIDPLPALVHPKTNRLHTRF 562 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 A+ TGR S QN+P + + +R + Sbjct: 563 NQTATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAFV 597 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 A EG KLVV D + IE RVLA ++G++ ++ F+ G+D++ T + F V P V R Sbjct: 598 AEEGWKLVVLDYSQIELRVLAHLSGDENLIRVFQEGQDIHTQTASWMFGVPPEAVDSLMR 657 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + G++ Sbjct: 658 RAAKTINF--------------GVLYGMS------------------------------A 673 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + E + + Q + +V + + + E G Sbjct: 674 HRLSGELAIPYEEAVAFIERYFQSYPKVRAW---IEKTLAEGRERGYVETL--------- 721 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 GR D+ + + + R VQ + D+ Sbjct: 722 --------------FGRRRYVPDLASR---VKSIREAAERMAFNMP------VQGTAADL 758 Query: 610 LAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLK 664 + M+ + G ++L VHDE+V E P + M W +PL+ Sbjct: 759 MKLAMVKLFPRLQELGARMLLQVHDELVLEAPKEQAEEVAQEAKRTMEEV--WPLKVPLE 816 Query: 665 AEGYESKRY 673 E + + Sbjct: 817 VEVGIGEDW 825 >gi|227513546|ref|ZP_03943595.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577] gi|227083419|gb|EEI18731.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577] Length = 883 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 93/636 (14%), Positives = 192/636 (30%), Gaps = 135/636 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRW-ICTLVLARSNGLPSALK 110 + +K LE++ V N F+ + L I + L+++ + Sbjct: 362 KQVKAVLESSTVQK---NV-FDAK--RTYVGLYRSSITLQNVDFDMLLVSYLLNTTNNSN 415 Query: 111 AV---GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 V + ++ K +E + +H + D+ Sbjct: 416 DVGTVAKLHGFANIKTDE----EVYGKGAKKKIDPEVPEFFDHIVHKAKAIDQLHNDMFK 471 Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + + E ++ ++ + G V+ + +++Q + Sbjct: 472 ALDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTIFQEAG 531 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L LF + L + T+ +T VL P V N R S Sbjct: 532 -EEFNIGSPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEKLAPDAPIVQNVLNYRQ-IS 589 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + ++ L++ ++ + T ++TGR S QN+P S Sbjct: 590 KLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRSEEGR------- 642 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +R I S E ++ +D + IE RVLA + G++ +AF Sbjct: 643 ------------------LIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNMQEAFR 684 Query: 404 TGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 GED++ TT R F + + VT + R K + G++ Sbjct: 685 EGEDIHATTARRIFGLASNDDVTPELRRQAKAVN--------------FGIVYGISDYGL 730 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A+ + + + +++ V + Sbjct: 731 AN------------------------------NTGISRKQAHQFIQRYFEEYPGVKKYTE 760 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 ++ + + + + + R D+ + Sbjct: 761 DIVEFAKN--------------------------HGYVETIAHRRRYLPDIHSRNF---N 791 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPD 638 R +Q + DI+ M+N +A ++L VHDE++ E P+ Sbjct: 792 LRSFAERTAMNTP------IQGSAADIIKIAMINMDEALKPLKTRMLLQVHDELIFEVPN 845 Query: 639 TDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + L +M S +PLK E + K + Sbjct: 846 DEMETVEKLIPKVMDSAIR--LNIPLKVESHWGKTW 879 >gi|320450017|ref|YP_004202113.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01] gi|320150186|gb|ADW21564.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01] Length = 830 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 94/609 (15%), Positives = 177/609 (29%), Gaps = 147/609 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + VL + + ++LA + + V Sbjct: 353 DLAVLALREGIALAPG--DDPMLLAYLLDPSNTAPEGVARRYG----------------- 393 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 + + + E E+ L + + Sbjct: 394 ------GEWTEEAGERALLSERLYAALLERLKGEERLLWLYE---EVEKPLSRVLAHMEA 444 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250 G +DVA L+ V+ E +L++E+ L + ++L+ LF E GL Sbjct: 445 TGVRLDVAYLKALSLEVEAELRRLEEEVHRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 503 Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 E + +T VL + ++ P ++ R S+ ++ L ++ T Sbjct: 504 TEKTGKRSTSAAVLEALREAHPIVDRILQYR-ELSKLKGTYIDPLPALVHPKTNRLHTRF 562 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 A+ TGR S QN+P + + +R + Sbjct: 563 NQTATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAFV 597 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 A EG +LVV D + IE RVLA ++G++ ++ F+ G+D++ T + F V P V R Sbjct: 598 AEEGWRLVVLDYSQIELRVLAHLSGDENLIRVFQEGQDIHTQTASWMFGVPPEAVDSLMR 657 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + G++ Sbjct: 658 RAAKTINF--------------GVLYGMS------------------------------A 673 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + E + + Q + +V + + + E G Sbjct: 674 HRLSGELAIPYEEAVAFIERYFQSYPKVRAW---IEKTLAEGRERGYVETL--------- 721 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 GR D+ + + + R VQ + D+ Sbjct: 722 --------------FGRRRYVPDLASR---VKSIREAAERMAFNMP------VQGTAADL 758 Query: 610 LAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLK 664 + M+ + G ++L VHDE+V E P + M W +PL+ Sbjct: 759 MKLAMVKLFPRLQELGARMLLQVHDELVLEAPKEQAEEVAQEAKRTMEEV--WPLKVPLE 816 Query: 665 AEGYESKRY 673 E + + Sbjct: 817 VEVGIGEDW 825 >gi|313124192|ref|YP_004034451.1| DNA polymerase i [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280755|gb|ADQ61474.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 887 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 102/679 (15%), Positives = 199/679 (29%), Gaps = 144/679 (21%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF 75 L G + D FA D P LK LE++ V N F Sbjct: 329 LAMFGDNYHLADFA--GFALKIGGETFVSRDVFLLQESP--LKGMLEDSAVQK---NV-F 380 Query: 76 ERTVLKA----CFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 + LK + L I L+ + +GE + + K + Sbjct: 381 D---LKRTTYGLYRLGIKAESLTFDLLLASYLVDNEKNSNDLGEL--VQGYDYFDLKTDL 435 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--EQELWYL 188 + KG+ + D + A + D + +++ + E + Sbjct: 436 EVYGKGKNAKIPADDAVFFNHLAGKTAAIAALKDSLL-KQLKDHEQDDLYDSIELPTARV 494 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G V + L V +L++++ + ++L LF + G Sbjct: 495 LAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAG-EEFNLNSPKQLGVILFEKLG 553 Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+ +T VL+ K+ +P + R S+ + L++ ++ Sbjct: 554 LPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQ-ISKIQSTYVKGLLDVIDERDGRI 612 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 T + TGR S QN+P + + +R Sbjct: 613 HTRYLQTLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIR 647 Query: 366 SCVIA--SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422 + +G + D + IE RVLA ++ + +AF+TG D++ T + F+++ Sbjct: 648 KAFVPSSPDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVD 706 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT QR K + G++ + + Sbjct: 707 EVTSLQRRRAKAVNF--------------GIVYGISDYGLSKNLDI-------------- 738 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + + +++ + +A + E G A Sbjct: 739 ----------------SRKQAKEFIDEYFEQYPGIQAYM---DRAVKDAREKGYAETIMH 779 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 R D+ R + Sbjct: 780 -----------------------RRRYLPDIHAKNF---NVRSFAERTAINSP------I 807 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655 Q + DI+ M+N K +V+ VHDE++ + P + + +M + Sbjct: 808 QGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAV 867 Query: 656 SWAKGLPLKAE-GYESKRY 673 +PL A+ G+ Y Sbjct: 868 K--LDVPLVADAGWGHDWY 884 >gi|325126152|gb|ADY85482.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 886 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 101/678 (14%), Positives = 197/678 (29%), Gaps = 143/678 (21%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF 75 L G + D FA D P LKE LE++ V N F Sbjct: 328 LAMFGDNYHLADFA--GFALKIGGETFVSRDVFLLQESP--LKEMLEDSAVQK---NV-F 379 Query: 76 ERTVLKA----CFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 + LK + L I L+ + +GE + + K + Sbjct: 380 D---LKRTTYGLYRLGIKAEGLSFDLLLASYLVDNEKNSNDLGEL--VQGYDYYDLKTDL 434 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--EQELWYL 188 + KG+ + D + A + D + +++ + E + Sbjct: 435 EVYGKGKNAKIPADDAVFFNHLAGKTAAIAALKDSLL-KQLKDHEQDDLYDSIELPTARV 493 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G V + L V +L++++ + ++L LF + G Sbjct: 494 LAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAG-EEFNLNSPKQLGVILFEKLG 552 Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+ +T VL+ K+ +P + R S+ + L++ ++ Sbjct: 553 LPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQ-ISKIQSTYVKGLLDVIDERDGRI 611 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 T + TGR S QN+P + + +R Sbjct: 612 HTRYLQTLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIR 646 Query: 366 SCVIA--SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422 + +G + D + IE RVLA ++ + +AF+TG D++ T + F+++ Sbjct: 647 KAFVPSSPDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVD 705 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT QR K + G++ + + Sbjct: 706 EVTSLQRRRAKAVNF--------------GIVYGISDYGLSKNLDI-------------- 737 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + + ++ + + A + E G A Sbjct: 738 ----------------SRKQAKEFIDEYFDQYPGIQAYMDW---AVKDAREKGYAETIMH 778 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 R D+ R + Sbjct: 779 -----------------------RRRYLPDIHAKNF---NVRSFAERTAINSP------I 806 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655 Q + DI+ M+N K +V+ VHDE++ + P + + +M + Sbjct: 807 QGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAV 866 Query: 656 SWAKGLPLKAEGYESKRY 673 +PL A+ + Sbjct: 867 K--LDVPLVADASWGHDW 882 >gi|227505032|ref|ZP_03935081.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940] gi|227198396|gb|EEI78444.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940] Length = 863 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 95/631 (15%), Positives = 182/631 (28%), Gaps = 141/631 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEA 115 L + L N+D H + +L I + T + A Sbjct: 355 LAQWL-NSDAPKYFHEAKAAFHMLA---GRGIELRGIAHDTAIAAYLLRPG--------- 401 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 Q+ E ++ R K + + + + +T+++ Sbjct: 402 -----QRTYELSDVYQRHLKKTLGQASDQLSLLDDTSLVDQAAAIMELAAELTKQLQAID 456 Query: 176 EPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + EL + + G VDV + T + + ++ L + Sbjct: 457 SFELYTDLELPLVGILARMEATGIAVDVEILETQLDAFIEQVAEQERAARELAGDDSLNL 516 Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK--KLTPQAIQVFNNRMRASRSAV 288 ++L+ LF + T+ +T + + P + +R + Sbjct: 517 NSPKQLQAVLFETFEMPKTKKTKTGYSTAAKEIEQLAVNHPHPFLDHLLAHR-EYQKMKT 575 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 L L++ + DGR+ T A TGR S QN+P + + Sbjct: 576 T-LEGLIKTVQPDGRIHTTFNQTVA-STGRLSSTEPNLQNIPVRTEAGR----------- 622 Query: 349 SITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +RS I EG L+ AD + IE RV+A ++ + ++A+ GED Sbjct: 623 --------------QIRSAFIVGEGFETLMTADYSQIEMRVMAHLSEDPGLIEAYRAGED 668 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 L+ ++ F+V +VT + R K M L GL+ + Sbjct: 669 LHNYVGSKVFDVPVDEVTPELRRRVKAMSYGLV--------------YGLSAFGLSQQ-- 712 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + + + ++ V L Sbjct: 713 ----------------------------LGIPAREAKEIMENYFERFGGVKRY---LDNV 741 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 E+ ++G GR ++ ++ Sbjct: 742 VEKARKDGYTATV-----------------------FGRRRYLPELNSDN---RLARENA 775 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFN 643 R +Q + DI+ M+ A ++L VHDE+V E + Sbjct: 776 ERAALNAP------IQGTAADIIKVAMIRVDNALRDLKSRVLLQVHDELVVEVAPGEADE 829 Query: 644 ASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + M S +PL+ K + Sbjct: 830 VKKILEREMDSAIE--LTVPLEVSAGAGKDW 858 >gi|325478660|gb|EGC81771.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13] Length = 952 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 115/331 (34%), Positives = 168/331 (50%), Gaps = 14/331 (4%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +DL K G+ KYAE D ++LFA+ DD V++ D + ++P+ + Sbjct: 1 MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGGVKVIDLSNGEIIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + + A N+ FER L + W CT++ + GLP +L+ VGE LKL Sbjct: 61 SALSDKSIEKWAFNASFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QKM EGK LI F CK + RN P+H E W F EY + DV EI K+ Sbjct: 121 DKQKMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLEKWSTFKEYNQRDVETEMEIKKK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+ E E +++DQ INDRG +D L + + ++ R + LT + + Sbjct: 181 LSAFPMPQSEWENYWVDQNINDRGILIDEVLVDSAIKFDEILREENMDRAIELTG--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + GL ++ L + + V S+ K +V R S+S+V K + Sbjct: 239 PNSPMQLKEWLNEK-GLEIDSLAK---KDVESALKNAEGDIKEVLELRQELSKSSVRKYD 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + +D R+RG LQF GA+RTGR+ Sbjct: 295 AMKNVKGNDKRVRGLLQFYGANRTGRYCLTG 325 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 107/370 (28%), Positives = 169/370 (45%), Gaps = 63/370 (17%) Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLP---TSITSDPDPLQIISDCVRSCVIASEGKKL 376 SG + QNL R + +L + + + P ++S +R+ I EG + Sbjct: 631 SGRLIQVQNLRRNNLQDLDLARSLVRNKEYESLEMLYDSPSDVLSQLIRTAFIPKEGCRF 690 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKV 434 +V+D + IEARVLAW+AGE W L AF+ GED+Y +T ++ F V + D R GKV Sbjct: 691 IVSDFSAIEARVLAWLAGEDWVLNAFKNGEDIYCSTASQMFGVPVVKHGVNGDLRQKGKV 750 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 LA GY G A + M + Sbjct: 751 ATLACGYGGSVGALKAMGAI---------------------------------------- 770 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 E + + +WR+ + + LW ++ ++ ++ + + + + + Sbjct: 771 EMGLSEDELQSIVDSWREANPNIVSLWWDIDSVVKRVVKTRS------KEEYKNLVISYE 824 Query: 555 KNNLILMLPSGRSLVYRD--VGNNRSYLNTT-------TRQLTREYTYGGKLTENIVQAV 605 K L + LPS R L Y +G NR + + + +YGGK ENIVQA+ Sbjct: 825 KGILFIELPSKRRLAYPKAKIGMNRFGGESIVYEGIVVGNKWDKIESYGGKFVENIVQAI 884 Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 +RDILAE MM K G++IV+ +HDE+V E +D + + +M+ PSWA GL L A Sbjct: 885 ARDILAEAMMRLEKKGFNIVMHIHDEVVIE---SDSSSIEEINEIMSLVPSWAPGLILDA 941 Query: 666 EGYESKRYRK 675 +G+ES+ Y+K Sbjct: 942 DGFESEFYKK 951 >gi|258508756|ref|YP_003171507.1| DNA polymerase I [Lactobacillus rhamnosus GG] gi|257148683|emb|CAR87656.1| DNA polymerase I [Lactobacillus rhamnosus GG] gi|259650062|dbj|BAI42224.1| DNA polymerase I [Lactobacillus rhamnosus GG] Length = 881 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 87/637 (13%), Positives = 191/637 (29%), Gaps = 140/637 (21%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + + L +++ + + R ++ A L +P L+ + +G+ Sbjct: 362 EVAKWLGDSNRDLTVFDGK--RNIVAAHRLGLKLPDIA-FDVLLASYLINPDENSNDLGK 418 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC----KGDVTVTRE 170 + + +L R P + + F +T + Sbjct: 419 I-----AEDHDYHDLPRDEDVYGKGA---KRQVPEDKLLFEQFARKSQALFALRPDLTED 470 Query: 171 IFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + K+ + + E+ + + +G ++ + L++++ Sbjct: 471 LAKQEQTDLFTDMEMPLARVLAEMEIQGITLNAQTLKDMGTEFSQSIKVLEEKIYGEAGV 530 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + L + T+ +T VL+ K +P + + R ++ Sbjct: 531 K-FNLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYR-GWAK 588 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + L++A D ++ ++TGR S QN+P Sbjct: 589 LNSTYVVGLLKAQMPDHKIHTRYLQ-TLTQTGRLSSVDPNMQNIPARDE----------- 636 Query: 346 LPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +R + S ++ +D + IE RVL+ ++G++ +AF+ Sbjct: 637 ---------------GKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDENMQQAFKH 681 Query: 405 GEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G D++ T + F + P +VT D R K G++ A Sbjct: 682 GVDIHANTAMKIFGLDSPDEVTPDMRRQAKATN--------------FGIVYGISDYGLA 727 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + + +++ +V + Sbjct: 728 QNI------------------------------GISRKQAKAFIDGYFEQYPKVHDYM-- 755 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 ++ E+G R + + Sbjct: 756 -ENMVKKAREDGYVETL-----------------------FHRRRYLPQIHSRNF---NL 788 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP 637 + R +Q + DI+ M+ KA ++L VHDE++ E P Sbjct: 789 RKFAERTAMNTP------IQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAP 842 Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + L +M S S A +PLK E + + Sbjct: 843 TAEMAQLGQLVPKIMDSAVSLA--VPLKVESHYGPTW 877 >gi|104774358|ref|YP_619338.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514452|ref|YP_813358.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423439|emb|CAI98312.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093767|gb|ABJ58920.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 886 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 101/678 (14%), Positives = 197/678 (29%), Gaps = 143/678 (21%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF 75 L G + D FA D P LKE LE++ V N F Sbjct: 328 LAMFGDNYHLADFA--GFALKIGGETFVSRDVFLLQESP--LKEMLEDSAVQK---NV-F 379 Query: 76 ERTVLKA----CFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 + LK + L I L+ + +GE + + K + Sbjct: 380 D---LKRTTYGLYRLGIKAEGLSFDLLLASYLVDNEKNSNDLGEL--VQGYDYYDLKTDL 434 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--EQELWYL 188 + KG+ + D + A + D + +++ + E + Sbjct: 435 EVYGKGKNAKIPADDAVFFNHLAGKTAAIAALKDSLL-KQLKDHEQDDLYDSIELPTARV 493 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G V + L V +L++++ + ++L LF + G Sbjct: 494 LAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAG-EEFNLNSPKQLGVILFEKLG 552 Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+ +T VL+ K+ +P + R S+ + L++ ++ Sbjct: 553 LPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQ-ISKIQSTYVKGLLDVIDERDGRI 611 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 T + TGR S QN+P + + +R Sbjct: 612 HTRYLQTLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIR 646 Query: 366 SCVIA--SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422 + +G + D + IE RVLA ++ + +AF+TG D++ T + F+++ Sbjct: 647 KAFVPSSPDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVD 705 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT QR K + G++ + + Sbjct: 706 EVTSLQRRRAKAVNF--------------GIVYGISDYGLSKNLDI-------------- 737 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + + ++ + + A + E G A Sbjct: 738 ----------------SRKQAKEFINEYFDQYPGIQAYMDW---AVKDAREKGYAETIMH 778 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 R D+ R + Sbjct: 779 -----------------------RRRYLPDIHAKNF---NVRSFAERTAINSP------I 806 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655 Q + DI+ M+N K +V+ VHDE++ + P + + +M + Sbjct: 807 QGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAV 866 Query: 656 SWAKGLPLKAEGYESKRY 673 +PL A+ + Sbjct: 867 K--LDVPLVADASWGHDW 882 >gi|229552558|ref|ZP_04441283.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|229314110|gb|EEN80083.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] Length = 881 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 87/637 (13%), Positives = 191/637 (29%), Gaps = 140/637 (21%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + + L +++ + + R ++ A L +P L+ + +G+ Sbjct: 362 EVAKWLGDSNRDLTVFDGK--RNIVAAHRLGLHLPDIA-FDVLLASYLINPDENSNDLGK 418 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC----KGDVTVTRE 170 + + +L R P + + F +T + Sbjct: 419 I-----AEDHDYHDLPRDEDVYGKGA---KRQVPEDKLLFEQFARKSQALFALRPDLTED 470 Query: 171 IFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + K+ + + E+ + + +G ++ + L++++ Sbjct: 471 LAKQEQTDLFTDMEMPLARVLAEMEIQGITLNAQTLKDMGTEFSQSIKVLEEKIYGEAGV 530 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + L + T+ +T VL+ K +P + + R ++ Sbjct: 531 K-FNLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYR-GWAK 588 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + L++A D ++ ++TGR S QN+P Sbjct: 589 LNSTYVVGLLKAQMPDHKIHTRYLQ-TLTQTGRLSSVDPNMQNIPARDE----------- 636 Query: 346 LPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +R + S ++ +D + IE RVL+ ++G++ +AF+ Sbjct: 637 ---------------GKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDENMQQAFKH 681 Query: 405 GEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G D++ T + F + P +VT D R K G++ A Sbjct: 682 GVDIHANTAMKIFGLDSPDEVTPDMRRQAKATN--------------FGIVYGISDYGLA 727 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + + +++ +V + Sbjct: 728 QNI------------------------------GISRKQAKAFIDGYFEQYPKVHDYM-- 755 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 ++ E+G R + + Sbjct: 756 -ENMVKKAREDGYVETL-----------------------FHRRRYLPQIHSRNF---NL 788 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP 637 + R +Q + DI+ M+ KA ++L VHDE++ E P Sbjct: 789 RKFAERTAMNTP------IQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAP 842 Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + L +M S S A +PLK E + + Sbjct: 843 TAEMAQLGQLVPKIMDSAVSLA--VPLKVESHYGPTW 877 >gi|331269049|ref|YP_004395541.1| DNA polymerase I [Clostridium botulinum BKT015925] gi|329125599|gb|AEB75544.1| DNA polymerase I [Clostridium botulinum BKT015925] Length = 881 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 86/657 (13%), Positives = 199/657 (30%), Gaps = 156/657 (23%) Query: 38 DDHPVELWDC-----VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 ++ + + + + +++K+ E+ ++ ++H+ +L+ DI Sbjct: 356 NEEKIYVVNINKIKNENYDKYLELIKKLFEDENIKKISHDIKNIYVILRKY---DIDAKN 412 Query: 93 W-ICTLVLARSNGLPSA----LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + T + A + + E L ++ + +E ++ +C E +E L K Sbjct: 413 FSFDTKIAAYLLQPSKSDYILRDIILEKLSINIHESDEESKIKETYCIKEIYEKLQKEIK 472 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 + E Y L + ++ G+ +D + Sbjct: 473 SANMEEL----FYNVE-------------------LPLVKVLASMECEGFKIDKDRLTEI 509 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 + V+ L++E+ + + ++L LF + L + T+ +T VL Sbjct: 510 GEKFKVKIETLEKEIHE-FADEDFNIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLE 568 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K P ++ R ++ + L ++ DG++ + + TGR S Sbjct: 569 KLKDSHPIISKIIEYRQ-ITKLDSTYVEGLKHVIDEDGKIHSSFNQTVTT-TGRLSSTEP 626 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAG 383 QN+P E +R + + E + AD + Sbjct: 627 NLQNIPIKYEMGRE-------------------------IRKVFVPNNEESVIFSADYSQ 661 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA +A ++ + AF+ +D++ T + F V +VT R+ K + + Sbjct: 662 IELRVLAHIANDEKLIDAFKHHKDIHTITASEVFKVHIDEVTPLMRSNAKAVNFGIV--- 718 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + + Sbjct: 719 -----------------------------------------YGIGAFSLSKDINVSRKEA 737 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + ++ V + +E+ EQ + + Sbjct: 738 KEYIDTYFSRYPNVKKYIDEIISKAEQ--------------------------DGFVTTI 771 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623 R +V + + + R +Q + D++ M++ + Sbjct: 772 MNRKRYIPEVQSRNKIVRS---FGERLAMNTP------IQGSAADVIKLAMVHVYEELIK 822 Query: 624 ------IVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ + + M + +PL+A+ + Sbjct: 823 RNLKSTLILQVHDELILNVYKDELEEVKQMVVDKMEGVMNLL--VPLEADVNVGTTW 877 >gi|170758638|ref|YP_001788325.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree] gi|169405627|gb|ACA54038.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree] Length = 875 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 101/680 (14%), Positives = 203/680 (29%), Gaps = 153/680 (22%) Query: 17 TKCGICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENT 64 + + Y E ++LF+ + V D +V KE E+ Sbjct: 322 KENDLYLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCKEIFESK 381 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 ++ + +++ RT+L+ ++ + + A V + ++SS E Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIK-FDINLAAYLIDP------VRKEYEISSLASE 433 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 + I R + + + E D + ++ EQ Sbjct: 434 YLFKNINREDEFLKIKEVNI------MPNLYKVLEEKIKDQDMEELLY-------KVEQP 480 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + G+ VD + L + E E+ S++ + ++L LF Sbjct: 481 LTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE-EEFNINSPKQLGKILF 539 Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + L + T+ +T VL + P ++ R ++ + L A++ D Sbjct: 540 EKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQ-LTKIYSTYIEGLKAAIDED 598 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 G++ + TGR S QN+P E Sbjct: 599 GKIHSNFNQ-TVTATGRLSSTEPNLQNIPIKYEMGRE----------------------- 634 Query: 362 DCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R I + G ++ AD + IE RVLA ++ ++ + AF +D++ T + F V Sbjct: 635 --IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVP 692 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 +VT R+ K + + Y G+ + + Sbjct: 693 IEEVTPLMRSNAKAVNFGIVY--------------GIGDFSLSQ---------------- 722 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + ++ A+ +++ V L E+ +E G Sbjct: 723 --------------DLNITRKEAKQYIDAYLERYPNVKLY---LENIVEEAVEKGYVSTI 765 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 R ++V ++ + R Sbjct: 766 LN-----------------------RRRYIKEVKSSNKIVKAA---GERLAMNSP----- 794 Query: 601 IVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTS 653 +Q + DI+ M+N + I+L VHDE++ + L M Sbjct: 795 -IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALVEKEMEQ 853 Query: 654 NPSWAKGLPLKAEGYESKRY 673 G L + + Sbjct: 854 VLELKVG--LDVDINIGNNW 871 >gi|116327352|ref|YP_797072.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120096|gb|ABJ78139.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 921 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 91/700 (13%), Positives = 196/700 (28%), Gaps = 154/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54 L +D ET SP ++ +F + + + Sbjct: 344 RVLSVDTETTSPNP----------AMAELLGISFSNQEKTGFYVSVKNSASLFQDKSFSL 393 Query: 55 QVLKEAL---ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SA 108 + ++E L ++ V V N ++ VL+ + + T++ + Sbjct: 394 EEIREHLGPVLSSQVPKVGQNIKYDLIVLENH-GFILNNIQ-FDTMLASYVIQPEGRRHN 451 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + + + L L + + K EY D +T Sbjct: 452 MDVLAKDL------------LNYDTITYDDLVGTGKKKKELTDIDPEQVAEYAAEDADIT 499 Query: 169 REIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ E L + + G +DV L + D E L Sbjct: 500 FRLYQIFRKKIKESGVEPILRNIEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRHL 559 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ETTCQRVLSSNKKLTPQAIQ 275 + E+ + ++L+ LF + L T +T VL P + Sbjct: 560 ESEIHKQAG-RSFNIASTKELQKILFDDLKLKTVKKTQTGYSTDHEVLEELLGEHPIVEK 618 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + R + ++ ++ L + +N GR+ + A+ TGR S QN+P R Sbjct: 619 LLDYR-KYTKLKSTYVDALPKMVNPRTGRIHTSYNQTIAA-TGRLSSTDPNLQNIPIRDR 676 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMA 393 +R + +++ D + IE R++A ++ Sbjct: 677 EGR-------------------------LLRKGFTVDSDEYEILSLDYSQIELRIMAHIS 711 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + L+A+ G D+++ T A + V +VT + R KV+ ++ Y Sbjct: 712 KDPAMLEAYNHGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTP-----YGL 766 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + L + ++ +++ M E ++ G + Sbjct: 767 SRNLRIPRDEAKSFIERYMIQYPGVKSYMDSMVEFAEKNGYVQTLTGRR-RLIVD----- 820 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 N H++ ++ + + ++ + + + RS + Sbjct: 821 -------INSTHKSAKEAAKRVAINSPVQGTSADMIKIAMINIHEDIEKKHYRSRML--- 870 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + +V VH Sbjct: 871 -----------------------------------------LQVHDE---LVFEVH---- 882 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + M + LP+ EG + Sbjct: 883 ---KKEKEEFKISMKKHMENAMP--LDLPILVEGKFGVNW 917 >gi|212550625|ref|YP_002308942.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548863|dbj|BAG83531.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 928 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 82/671 (12%), Positives = 200/671 (29%), Gaps = 141/671 (21%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTIVAHNSYFERTVLKA 82 ++ AF + Q+ KE E+ + V N ++ VLK Sbjct: 371 SAELVGIAFTLQEGEAYFLPFFGRKRDIIPTVQLFKEIFESDTILKVGQNLKYDINVLKK 430 Query: 83 CFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 + + + L+ L + + + ++ +ELI Sbjct: 431 Y-GIRMN-YPIFDILIAHYLINPEYLHNLDFLAKTY--LNYRIINTEELIG--------- 477 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQ 190 + + L +Y + + ++ EP+ E L ++ Sbjct: 478 SKKESQLSVRQVPLSLLADYACENADIVLKLKNIFEPIIRKSNFSNLFYRIELPLVFVLS 537 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL- 249 + + G +D++ + +++ +++ + ++ + + + + LF + Sbjct: 538 DMEEFGVKLDISALKDYSVVLNRYLESIEKIIFQISG-KIFNVNSPKMVGEILFDHLKII 596 Query: 250 HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 T++ T + +L + KK P ++ R ++ + ++TL ++ + Sbjct: 597 ENSKKTKSGQYATSEGILENLKKKHPIVGEILKYR-KSKKLLTTYIDTLPTLVSFIDKKI 655 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 T + TGR S QN+P + +E +R Sbjct: 656 HTTYNQATTATGRLSSNSPNLQNIPIRDKEGKE-------------------------IR 690 Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 I + + AD + IE R++A ++ ++ L+AF G+D++ + F V A++T Sbjct: 691 RVFIPDDNCLFLSADYSQIELRIMAHLSEDKNMLEAFRNGQDIHSAIASIIFGVPLAEIT 750 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 D R K+ + Y L ++ F N + D +N+ Sbjct: 751 CDMRRKAKITNFGIIYGISV-----FGLAEQLQVSRFIAKELINKYFMIFPDIKNYIDRS 805 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + ++R Sbjct: 806 IAIARKDGYVETIFR-----------------------------------------RKRF 824 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG--GKLTENIVQ 603 +P + + Y + + + + + + + +L +N +Q Sbjct: 825 LPDINSRNSVV-----------RKYAERNSINAPIQGSAADIIKVAMNRIHRRLIDNDLQ 873 Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLP 662 + + ++ DE+ + + + M +P Sbjct: 874 S-------KMIIQVH-----------DELNFNVFIDELDKVKQIVVYEMEHATH--LKVP 913 Query: 663 LKAEGYESKRY 673 L K + Sbjct: 914 LVVNCGIGKNW 924 >gi|325265069|ref|ZP_08131796.1| DNA polymerase I [Clostridium sp. D5] gi|324029759|gb|EGB91047.1| DNA polymerase I [Clostridium sp. D5] Length = 871 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 79/657 (12%), Positives = 176/657 (26%), Gaps = 151/657 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL--DIPI 90 + + + C + + + + E + F+ LK Sbjct: 346 VSIAYGPEQIYSILCDTNMDIEYLFGKLTEIAGSVKTF--AMFD---LKKYLPHVKAPDQ 400 Query: 91 HRWICTLVLARSNGL---PSALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + V A + V E L L + + R+ Sbjct: 401 EKCFDVTVAAYLLNPLKNNYDYEDVAREQLGLMIDEKADVMTKACYEAYTAFAAVKPLRD 460 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 K +F E L + + G V+ Sbjct: 461 ---------------KMQAEGMYHLFT------DIEMPLVFTLFDMEQAGIQVEAEALKF 499 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263 + + +L++E+ + + ++L LF L T+ +T VL Sbjct: 500 YGEQLGGRIVELEKEIYEMAG-ETFNINSPKQLGVVLFDHMQLPNGKKTKTGYSTAADVL 558 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 P ++ R ++ + L + +DGR+ G + TGR S Sbjct: 559 DKLAPDYPVVEKILEYRQ-LTKLKSTYADGLAVYIGADGRIHGKFNQ-TITATGRISSTE 616 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+P + +R + EG + AD + Sbjct: 617 PNLQNIPVR-------------------------MELGRLIRKVFVPKEGYVFIDADYSQ 651 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+LA +G++ ++A++ D++ T ++ F+ +VT+ QR K + Sbjct: 652 IELRILAHCSGDEQLIQAYKDARDIHRMTASQVFHTPFEEVTELQRRNAKAVNF------ 705 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G++ + + Sbjct: 706 --------GIVYGISSFGLSQDLSI------------------------------TRKEA 727 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + + + + ++ ++ ++ Sbjct: 728 AQYIENYFETYPGIKRFLDDTVAHAKE--------------------------EGYVVTL 761 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620 GR ++ ++ R +Q + DI+ M+ + Sbjct: 762 FGRRRPVPELKSSNFMQRNF---GERVAMNAP------IQGSAADIMKIAMIGVNRELKE 812 Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + + M +PL + + + + Sbjct: 813 KGLRSRMILQVHDELLIEAHREEIGEVQEILKRQMEQAAD--LDVPLIVDMHTGENW 867 >gi|116332033|ref|YP_801751.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125722|gb|ABJ76993.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 921 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 91/700 (13%), Positives = 196/700 (28%), Gaps = 154/700 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54 L +D ET SP ++ +F + + + Sbjct: 344 RVLSVDTETTSPNP----------AMAELLGISFSNQEKTGFYVSVKNSASLFQDKSFSL 393 Query: 55 QVLKEAL---ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SA 108 + ++E L ++ V V N ++ VL+ + + T++ + Sbjct: 394 EEIREHLGPVLSSQVPKVGQNIKYDLIVLENH-GFILNNIQ-FDTMLASYVIQPEGRRHN 451 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + + + L L + + K EY D +T Sbjct: 452 MDVLAKDL------------LNYDTITYDDLVGTGKKKKELTDIDPEQVAEYAAEDADIT 499 Query: 169 REIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ E L + + G +DV L + D E L Sbjct: 500 FRLYQIFRKKIKESGVEPILRNIEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRHL 559 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ETTCQRVLSSNKKLTPQAIQ 275 + E+ + ++L+ LF + L T +T VL P + Sbjct: 560 ESEIHRQAG-RSFNIASTKELQKILFDDLKLKTVKKTQTGYSTDHEVLEELLGEHPIVEK 618 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + R + ++ ++ L + +N GR+ + A+ TGR S QN+P R Sbjct: 619 LLDYR-KYTKLKSTYVDALPKMVNPRTGRIHTSYNQTIAA-TGRLSSTDPNLQNIPIRDR 676 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMA 393 +R + +++ D + IE R++A ++ Sbjct: 677 EGR-------------------------LLRKGFTVDSDEYEILSLDYSQIELRIMAHIS 711 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + L+A+ G D+++ T A + V +VT + R KV+ ++ Y Sbjct: 712 KDPAMLEAYNHGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTP-----YGL 766 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + L + ++ +++ M E ++ G + Sbjct: 767 SRNLRIPRDEAKSFIERYMIQYPGVKSYMDSMVEFAEKNGYVQTLTGRR-RPIVD----- 820 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 N H++ ++ + + ++ + + + RS + Sbjct: 821 -------INSTHKSAKEAAKRVAINSPVQGTSADMIKIAMINIHEDIEKKHYRSRML--- 870 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + +V VH Sbjct: 871 -----------------------------------------LQVHDE---LVFEVH---- 882 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + M + LP+ EG + Sbjct: 883 ---KKEKEEFKISMKKHMENAMP--LDLPILVEGKFGVNW 917 >gi|88607943|ref|YP_504640.1| DNA polymerase I [Anaplasma phagocytophilum HZ] gi|88599006|gb|ABD44476.1| DNA polymerase I [Anaplasma phagocytophilum HZ] Length = 853 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 90/667 (13%), Positives = 181/667 (27%), Gaps = 155/667 (23%) Query: 19 CGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEALENTDVTIVAHNSYFER 77 G+ E + D+ + L + V V ++ Sbjct: 324 LGLYIEVEQGFISTIFAACDETRSFTVSSPEKVQKFVAAVTPILHSDSVLKVV----YDA 379 Query: 78 TVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFC 134 + F + + ++++ S ++ + + G LI Sbjct: 380 KSMMQFF---PELRAFDDIMIMSYSLDTGHHDHGFDSMSQRHLGQIFGITNGCILIRLHR 436 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 Y V T E + L + + Sbjct: 437 VIMR--------------KLFSAKLYT---VYYTLE------------RPLVPVIYELEK 467 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 G +D L L+ + + L++E+ L + ++L LF + Sbjct: 468 TGIKIDTELLKQLSDEFSLSISNLEEEIFGLAGCK-FNIASSQQLGKVLFEHMRIGGAKK 526 Query: 255 TET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 + T VL++ + ++ + LV ++++ T Sbjct: 527 MPSGSYCTNAEVLTALALDGVEVADKILKWRHFTKLKSTYTDALVRQVDANTGRVHTKYS 586 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 + A+ TGR S QN+P S+ E+ +RS IA Sbjct: 587 MTATATGRLSSSNPNLQNIPIRSKDGEK-------------------------IRSAFIA 621 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 +G KL+ AD + +E ++LA +A + +AF G D++V T + F ++ + R Sbjct: 622 EKGHKLIAADYSQMELKILAHIADVKAFRQAFAEGLDIHVVTAQQIFG-EYYEIDYELRR 680 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K G+ Sbjct: 681 RAKS--------------INFGIIYGMG------------------------------SY 696 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 A + + Q + + + ++G I A Sbjct: 697 GLARNIGISRREASEYVEQYFQYYPEIKRYMETTKAYAK---KHGYTITA---------- 743 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 GR + + + + R +Q + DI+ Sbjct: 744 -------------FGRKCFIEGINSPK---RALSSVAERAAINAP------IQGTAADIV 781 Query: 611 AEGMMNATKAGYD--IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEG 667 + M+ ++L VHDE++ E P+ + + L +M S + LPL Sbjct: 782 KKAMVRLQDRLTQGTMLLQVHDELLVEVPEEHVLSVARLMKEVMESAVVF--SLPLDVNI 839 Query: 668 YESKRYR 674 + Sbjct: 840 SVGDNWG 846 >gi|187778405|ref|ZP_02994878.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC 15579] gi|187772030|gb|EDU35832.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC 15579] Length = 875 Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats. Identities = 104/681 (15%), Positives = 206/681 (30%), Gaps = 155/681 (22%) Query: 17 TKCGICKYAEDVCVILFA--------FGFDDHPVELWDCVH-----DPVMPQVLKEALEN 63 + + Y E ++LF+ F D V D +V KE E+ Sbjct: 322 KENKLYLYFELEDIVLFSKSRIKILYVSFKD-EVYRIDFETLLKNTKEEFIEVCKEIFES 380 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 ++ + ++S RTVL+ ++ + A V + ++SS Sbjct: 381 KEIKKITYDSKNPRTVLRK-LGMEFNGIN-FDINLAAYLIDP------VRKEYEISSLAS 432 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 E + I R + + + E D + ++K +PL+ Sbjct: 433 EYLFKNINREDEDLKIKEVNI------MPKLYKVLEEKIKDQDIEELLYKIEQPLTET-- 484 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 + G+ VD + L + E E+ S++ + ++L L Sbjct: 485 -----LSAMETEGFKVDKNILLQLEKKFKGEIESTQSEIYSMSE-EEFNINSPKQLGKIL 538 Query: 244 FLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 F + L + T+ +T VL + P ++ R ++ + L A++ Sbjct: 539 FEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQ-LTKIYSTYIEGLKAAIDE 597 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 DG++ + TGR S QN+P E Sbjct: 598 DGKIHSNFNQ-TVTATGRLSSTEPNLQNIPIKYEMGRE---------------------- 634 Query: 361 SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R I +E ++ AD + IE RVLA ++ ++ + AF +D++ T + F V Sbjct: 635 ---IRKVFIPNTEDSVILSADYSQIELRVLAHISNDKNMISAFNEHDDIHTKTASEVFKV 691 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 +VT R+ K + + Y G+ + + Sbjct: 692 PIDEVTPLMRSNAKAVNFGIVY--------------GIGDFSLSQ--------------- 722 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 + ++ A+ +++ V L E+ I+ G Sbjct: 723 ---------------DLNITRKEAKQYIDAYLERYPNVKIY---LENIVEEAIQKGYVTT 764 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 R ++V ++ + R Sbjct: 765 ILN-----------------------RRRYIKEVKSSNKIVKAA---GERLAMNSP---- 794 Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMT 652 +Q + DI+ M+N + I+L VHDE++ + ++ M Sbjct: 795 --IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALVKREME 852 Query: 653 SNPSWAKGLPLKAEGYESKRY 673 G L + + Sbjct: 853 QVLELKVG--LDVDINIGNNW 871 >gi|199599523|ref|ZP_03212912.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus rhamnosus HN001] gi|199589592|gb|EDY97709.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus rhamnosus HN001] Length = 881 Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats. Identities = 86/637 (13%), Positives = 190/637 (29%), Gaps = 140/637 (21%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + + L +++ + + R ++ A L +P L+ + +G+ Sbjct: 362 EVAKWLGDSNRDLTVFDGK--RNIVAAHRLGLHLPDIA-FDVLLASYLINPDENSNDLGK 418 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC----KGDVTVTRE 170 + + +L R P + + F +T + Sbjct: 419 I-----AEDHDYHDLPRDEDVYGKGA---KRQVPEDKLLFEQFARKSQALFALRPDLTED 470 Query: 171 IFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + K+ + + E+ + + +G ++ + L++++ Sbjct: 471 LAKQEQTDLFTDMEMPLARVLAEMEIQGITLNAQTLKNMGTEFSQSIKVLEEKIYGEAGV 530 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + L + T+ +T VL+ K +P + + R ++ Sbjct: 531 K-FNLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYR-GWAK 588 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + L++A D ++ ++TGR S QN+P Sbjct: 589 LNSTYVVGLLKAQMPDHKIHTRYLQ-TLTQTGRLSSVDPNMQNIPARDE----------- 636 Query: 346 LPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +R + S ++ +D + IE RVL+ ++G++ +AF+ Sbjct: 637 ---------------GKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDENMQQAFKH 681 Query: 405 GEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G D++ T + F + P +VT D R K G++ A Sbjct: 682 GVDIHANTAMKIFGLDSPDEVTPDMRRQAKATN--------------FGIVYGISDYGLA 727 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + + +++ +V + Sbjct: 728 QNI------------------------------GISRKKAKAFIDGYFEQYPKVHDYM-- 755 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 ++ E+G R + + Sbjct: 756 -ENMVKKAREDGYVETL-----------------------FHRRRYLPQIHSRNF---NL 788 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP 637 + R +Q + DI+ M+ KA ++L VHDE++ E P Sbjct: 789 RKFAERTAMNTP------IQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAP 842 Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + L +M S S +PLK E + + Sbjct: 843 TAEMAQLGQLVPKIMDSAVSLV--VPLKVESHYGPTW 877 >gi|54023843|ref|YP_118085.1| DNA polymerase I [Nocardia farcinica IFM 10152] gi|54015351|dbj|BAD56721.1| putative DNA polymerase I [Nocardia farcinica IFM 10152] Length = 910 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 98/667 (14%), Positives = 193/667 (28%), Gaps = 140/667 (20%) Query: 28 VCVILFAFGFDDHPVELWDCV-HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 V A D D P L L + V H + L Sbjct: 358 GDVQALAIAAADGESGYIDVTVLTPEDEAALAAWLADPAVPKALHEAKSAMHAL-RGRGW 416 Query: 87 DIPIHRWICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKE----LIARFCKGETH 139 + T + A L + + E L+ + Sbjct: 417 TL-GGLTSDTALAAYLVRPGQRSFNLDDLSLRYLHRELRAETDDNAQLSLLDDEDAVDAE 475 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 + + + + T + PL + T+ + G V Sbjct: 476 TARAEMLRARAVLDLAAALDAELEQIESTALLTDMELPLLG-------VLATLEEAGIAV 528 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-- 257 D L + + + + + + + ++L+ LF E + T+T Sbjct: 529 DCEQLEALQRQFADKVAQAAEAAYGVIGKQI-NLGSPKQLQVVLFDELDMPKTKRTKTGY 587 Query: 258 -TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 T L S K P + +R A+R V ++ L++++ DGR+ T A+ Sbjct: 588 TTDADALESLFEKTQHPFLEHLLAHR-DATRLKVT-VDGLLKSVADDGRIHTTFNQTIAA 645 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374 TGR S QN+P + + +R + G Sbjct: 646 -TGRLSSTEPNLQNIPIRTDTGR-------------------------MIRDTFVVGPGY 679 Query: 375 -KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 +L+ AD + IE R++A ++G++ ++AF +GEDL+ +++F++ A+V+ + R K Sbjct: 680 AELMTADYSQIEMRIMAHLSGDEGLIEAFNSGEDLHSFVASKAFDIPIAEVSPELRRRIK 739 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 M L Y + GL+ Sbjct: 740 AMSYGLAYGLS---------SYGLSAQ--------------------------------- 757 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + + + R+ + E+ + + Sbjct: 758 --LKISTAEAKEQMDIYFSRFGRIRDYLYEVVEQARK----------------------- 792 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 GR D+ ++ R +Q + DI+ Sbjct: 793 ---VGYTETLFGRRRYLPDLDSSN---RQRREAAERMALNAP------IQGTAADIIKVA 840 Query: 614 MMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 M++ + ++L +HDE+V E + + L M++ A +PL Sbjct: 841 MIDVHRGIREAGLRSRMLLQIHDELVFEVAEGERDALEQLAREKMSAAI--ALSVPLDVS 898 Query: 667 GYESKRY 673 + + Sbjct: 899 VGTGRSW 905 >gi|227501799|ref|ZP_03931848.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725] gi|227077824|gb|EEI15787.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725] Length = 882 Score = 300 bits (767), Expect = 7e-79, Method: Composition-based stats. Identities = 92/631 (14%), Positives = 185/631 (29%), Gaps = 137/631 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113 +VL + LE+ H + +L I + T + A + Sbjct: 372 KVLVQWLESPA-PKYFHAAKAAFHMLA---GRGIELDGLAHDTALAAYILRPGQRTYELS 427 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + K L A + + ++ D+ E++ Sbjct: 428 DVYQ-----RHLQKSLGAATEQMSLLDSSSLVDQAAAIMELAEKLTAELQDIDS-FELYT 481 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 E L + + G VDV + T + + ++ L + Sbjct: 482 ------DLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQERSARELAGDEKLNL 535 Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK--KLTPQAIQVFNNRMRASRSAV 288 ++L+ LF + T+ +T + + P + +R + Sbjct: 536 NSPKQLQKVLFETFDMPKTKKTKTGYSTAAKEIEQLAIKHPHPFLDHLLAHR-EYQKMKT 594 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 L L++ + DGR+ T + TGR S QN+P + + Sbjct: 595 T-LEGLIKTVQPDGRIHTTFNQ-TVTSTGRLSSTEPNLQNIPVRTEAGR----------- 641 Query: 349 SITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +RS I EG +L+ AD + IE RV+A ++ + ++A++ GED Sbjct: 642 --------------QIRSAFIVGEGFEQLMTADYSQIEMRVMAHLSADPGLIEAYKAGED 687 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 L+ +R F+V QVT + R K M L GL+ + Sbjct: 688 LHNFVGSRVFDVPVDQVTPELRRRVKAMSYGLV--------------YGLSAFGLSQQ-- 731 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + +++ ++ V + +++ + Sbjct: 732 ----------------------------LGIPAGEAKSIMESYFERFGGVKKYLDDVVEQ 763 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + + GR ++ ++ Sbjct: 764 ARK--------------------------DGYTATLFGRRRYLPELNSDN---RLARENA 794 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFN 643 R +Q + DI+ M+ +A ++L VHDE+V E + Sbjct: 795 ERAALNAP------IQGTAADIIKVAMIRVDRALRDMKSRVLLQVHDELVVEVAPGEADQ 848 Query: 644 ASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + M S +PL+ + Sbjct: 849 VREILEREMDSAIE--LNVPLEVSAGAGTDW 877 >gi|302875558|ref|YP_003844191.1| DNA polymerase I [Clostridium cellulovorans 743B] gi|307690087|ref|ZP_07632533.1| DNA polymerase I [Clostridium cellulovorans 743B] gi|302578415|gb|ADL52427.1| DNA polymerase I [Clostridium cellulovorans 743B] Length = 862 Score = 299 bits (766), Expect = 9e-79, Method: Composition-based stats. Identities = 96/640 (15%), Positives = 188/640 (29%), Gaps = 153/640 (23%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---G 104 ++ + LK+ ENT + HN+ TVL ++DI + T + A Sbjct: 358 ENEEKSKEYLKKLFENTS-EKIIHNAKNLFTVLSK-LDIDIN-NFVFDTEIAAYLIESSD 414 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 LK + E + + + I+ + ++ Sbjct: 415 KEYTLKTLFETYLHETYQDISQE--ISNLSNLYQRLKEKIKELQMEDLLYK--------- 463 Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E L + + G+ VD L + E T +E+ Sbjct: 464 ----------------IELPLVKVLADMEKVGFKVDREQLDQLREKFINEITVSQKEIYE 507 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 + + ++L LF + L + T+ +T VL K P ++ R Sbjct: 508 MAG-EEFNISSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIDKITYYRQ 566 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ + L+ ++ DGR+ + + TGR S QN+P Sbjct: 567 -LTKLNSTYVEGLIHVIDQDGRIHSSFNQTVTT-TGRLSSTEPNLQNIPIKYEMGRA--- 621 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R + E ++ AD + IE RVLA MA ++ Sbjct: 622 ----------------------IRKVFVPNDEESLILSADYSQIELRVLAHMADDENMKT 659 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 A+ D++ T + FN+ QVTK++R+ K + + G++ Sbjct: 660 AYLEHIDIHTKTASEVFNLPLDQVTKEKRSAAKAVNFGIV--------------YGISDF 705 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + ++ + ++ +V E Sbjct: 706 ALSE------------------------------DLKISKKEAKQYIDTYFSRYPKVKEY 735 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + E+ L + R ++ ++ + Sbjct: 736 ISSTIAKAEK--------------------------ELYVNTIFNRRRFIPEITSSNKIV 769 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 R +Q + DI+ M+N K ++L VHDEI+ Sbjct: 770 KAL---GDRLAMNAP------IQGSAADIIKLAMVNVSKRLKEEKLKSSLILQVHDEIIL 820 Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + L M S + +PL+ + + Sbjct: 821 NVYKDELETVKELVKKEMESVIDF--SVPLEVDINTGTTW 858 >gi|149919860|ref|ZP_01908336.1| DNA polymerase I [Plesiocystis pacifica SIR-1] gi|149819307|gb|EDM78740.1| DNA polymerase I [Plesiocystis pacifica SIR-1] Length = 933 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 111/664 (16%), Positives = 203/664 (30%), Gaps = 151/664 (22%) Query: 36 GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI- 94 D V+ W + + L + + H ++ V+ + +L++ + + Sbjct: 390 SLSDGAVQQW---KPSEVLAKVGPLLSDAKLPKYTHALK-DQQVVLSRADLNVEVRNVVG 445 Query: 95 CTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 TL+ + + L+ + + + E+ + + Sbjct: 446 DTLLASYTLDPARSDHNLEGLAKDIG------------GRLVGDRESIVGKGKKRVGFDQ 493 Query: 152 EAWRLFGEYCKGDVTVTREIFKRL------------EPLSSKEQELWYLDQTINDRGYCV 199 A + G + + + + + + E L + + RG + Sbjct: 494 VAVAVAGPWAGERAGLAATLGPHMVAAAKAAGEQTQKLYAEVELPLARVLARLERRGVLL 553 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256 D A N + + L L+ V ++L LF E GL + T+ Sbjct: 554 DEAELQRQNDELGGQIDALKSTLQEEAGYAVD-PNSPKQLGKLLFEERGLPAKKKTKTGY 612 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASR 315 +T + L L P + + R ++ L+TL + +N + GRL + A+ Sbjct: 613 STDAQTLEELSLLDPIVKVILDYR-SLAKLKNTYLDTLPKLVNPNTGRLHTHFRQAVAA- 670 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P + +R +A EG + Sbjct: 671 TGRLSSREPNLQNIPIRTEQGRR-------------------------IRRGFVAPEGMQ 705 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 LV D + IE RVLA ++ + +KAF G D++ T A F V A+VT +QR + Sbjct: 706 LVTLDYSQIELRVLAHLSKDPNLVKAFTDGADVHRRTAAEVFEVPEAEVTSEQRRVA--- 762 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 A NF ++ A + Sbjct: 763 -----------------------------------------KAVNFGVIYGQSAFGLARQ 781 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + KA+ +K VS N L + T Sbjct: 782 LGIPQGRAGKYIKAYFKKIPGVSSYMNALIDTAKDT------------------------ 817 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 GR ++ + + ++ R +Q + DIL M+ Sbjct: 818 --GFAETIFGRRRRIPELRRRGAVARSYGERIAR---------NTPIQGSAADILKIAMV 866 Query: 616 NATKAG-----YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYE 669 + ++LTVHDE++ E L M + S +PL EG Sbjct: 867 EVERLLDDKPWARMLLTVHDELIFECETDKVQELIGLVKPAMEKSAS--LDVPLLVEGGA 924 Query: 670 SKRY 673 + Sbjct: 925 GANW 928 >gi|302386264|ref|YP_003822086.1| DNA polymerase I [Clostridium saccharolyticum WM1] gi|302196892|gb|ADL04463.1| DNA polymerase I [Clostridium saccharolyticum WM1] Length = 850 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 89/603 (14%), Positives = 165/603 (27%), Gaps = 141/603 (23%) Query: 92 RWICTLVLARSNGL---PSALKAVGEALK---LSSQKMEEGKELIARFCKGETHECLY-D 144 + + + S+ GK + R + + + Sbjct: 364 PVFDASIAGYLLNPLKDSYEYNDLAADYLDLSIPSRTELIGKSSMKRAMEENKEKAVSCI 423 Query: 145 RNKPNHR----EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 + + E D ++F +E + + D G V+ Sbjct: 424 CYMSYVAFRSRDLLQEALEKAGMD-----KLFYEIEMPLTYS------LYRMEDAGIRVE 472 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 L + V +L+Q++ T + ++L LF + T+ + Sbjct: 473 RKLLKEYGDRLKVRIAELEQKIYEETG-ETFNINSPKQLGEVLFDHMKIPGGKKTKTGYS 531 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL P + + R ++ + L + D R+ GT + TG Sbjct: 532 TAADVLEKLASDWPAVRLILDYRQ-LTKLNSTYADGLAAYIGPDERIHGTFNQ-TITATG 589 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P E +R + EG + Sbjct: 590 RISSTEPNLQNIPVRMELGRE-------------------------IRKVFVPQEGCVFI 624 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA M+G+Q + A++ ED++ T ++ F+V +VT QR K + Sbjct: 625 DADYSQIELRVLAHMSGDQRLIGAYKQAEDIHAITASQVFHVPLHEVTPLQRRNAKAVNF 684 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y + GL+ Sbjct: 685 GIVYGIS-----SFGLSEGLS--------------------------------------- 700 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + + + V + L ++ Sbjct: 701 ITRKEASEYIEKYFETYPGVKTFLDGLVAEAKE--------------------------L 734 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 GR ++ ++ + R +Q + DI+ M+ Sbjct: 735 GYAASMFGRRRPVPELKSSNFMQRSF---GERVAMNSP------IQGTAADIIKIAMIRV 785 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670 A IVL VHDE++ E + L M A L+ E Sbjct: 786 DGALRKQGLRSRIVLQVHDELLIEAYREEADQVKELLAEEMKHAADLAVS--LEVEANAG 843 Query: 671 KRY 673 + Sbjct: 844 DSW 846 >gi|328951917|ref|YP_004369251.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109] gi|328452241|gb|AEB08070.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109] Length = 896 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 96/720 (13%), Positives = 203/720 (28%), Gaps = 170/720 (23%) Query: 2 ATLFID--FETRSPIDLTKCGICKYA-------------------EDVCVILFAFGFDDH 40 + +D E +D + + A + ++++ Sbjct: 293 KEISLDNHTEDFVLLDTREALLEAVASIRAVGRLALFCHSTSQHPMLAQLKGLGLSWEEN 352 Query: 41 PVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97 H + + ++L+ + + ++ + + + + + L Sbjct: 353 QGAYLPFQHRLTEKDIWEILEPLWSDPGIAKISPDLKT-AMIWGERYGHPL-VGSVSDIL 410 Query: 98 VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 + + + + E L+ + L R L Sbjct: 411 LASYLLNP------------VRFDQTIENVALLDLGLNLLSPRELAGRPLAASDLPLELA 458 Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTL 207 Y G ++ RL +E+ + + + RG VD+ Sbjct: 459 IGYAAGRGQAAFRLWPRLHQQLQQEKLLRLYEDLELPVLRVLAAMETRGIRVDLDFLQRF 518 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRV 262 + V+ E L++E+ + + +L LF L + T+ +T V Sbjct: 519 GREVEKELASLEEEIHEMAG-EPFLIQSPPQLAAILFDRLQLPTQKKTKGRTAYSTDNEV 577 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSG 321 L++ P A +V R + ++ L + ++ GR+ T A+ TGR S Sbjct: 578 LTALADYHPIAAKVIAYR-TLGKLKATYVDGLCKQVHPASGRIHTTFVQSVAA-TGRLSS 635 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 QN+P + +R + S G + D Sbjct: 636 RDPNLQNIPVRGE-------------------------LGAQLRQAFLPSSGYIFISGDY 670 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R+LA + + L+AF+ GED++ T A F + P V+++ R KV+ Sbjct: 671 SQIELRLLAHFSADPVLLQAFQEGEDVHRQTAAEVFGLHPELVSREMRRQAKVIN----- 725 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 G++ A + Sbjct: 726 ---------FGIIYGMS------------------------------AFGLAKQLNVSQR 746 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 + + +H+ V + QA + + G Sbjct: 747 LAQDFINRYFARHTGVKRYF---DQALDTARQKGWVTTLL-------------------- 783 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 GR + ++ ++ R +Q + D++ + M+ A Sbjct: 784 ---GRRRPIPHLHSSN---RNLRQEAERSA------LNTPLQGSAADLIKKAMLAVEAAL 831 Query: 622 Y------DIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L +HDE++ E P L M PL + + + Sbjct: 832 VHEGLSGRLLLQIHDELLLEAPYQEQAATVDCLRRAMEGVAQ--LRTPLVVDIQTGENWG 889 >gi|73666681|ref|YP_302697.1| DNA polymerase I [Ehrlichia canis str. Jake] gi|72393822|gb|AAZ68099.1| DNA polymerase, family A [Ehrlichia canis str. Jake] Length = 861 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 86/660 (13%), Positives = 181/660 (27%), Gaps = 147/660 (22%) Query: 21 ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL 80 + D + + + D H + +K + V ++ L Sbjct: 331 LHIEIVDNSIGSISLSYRKEVFFYIDKDHVDDALEFIKPIFSLGYILKVI----YDVKTL 386 Query: 81 KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 ++ I + +V++ + +I+ + Sbjct: 387 LKIIP-NLDIVAFNDIMVMSYVLNPGVH--------------DHSLQNIISYNVEQSITN 431 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 H + V +++R+E + + G V+ Sbjct: 432 MNAANLLLLHELLRKSLF------VDRLYTVYERVEKPL------IRVLDNMEKIGVLVN 479 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TE 256 V + TL+ + L+ E+ L+ + ++L LF + G+ Sbjct: 480 VDVLKTLSATFSEKINMLESEIYKLSG-AEFNIASSKQLGNILFDKMGIKKGKKLSSGNY 538 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VLS + ++ + L + NS+ T + ++ T Sbjct: 539 STDAEVLSDLAFNDVEIADKILKWRHLTKLKTTYTDVLEKQKNSNSGRVHTFYSMVSTAT 598 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P S +R IA +G KL Sbjct: 599 GRLSSSNPNLQNIPVRSEEGN-------------------------SIRRAFIAKKGYKL 633 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R++A +A Q AF +D++ T + FN ++ K+ R K + Sbjct: 634 ISADYSQIELRIMAHIADVQAFKNAFFLNQDIHSITAKQIFNT--EKLDKNLRRRAKSIN 691 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ A + Sbjct: 692 F--------------GIIYGMSAFGLAKQLSI---------------------------- 709 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + + + + + + Sbjct: 710 --SRSEASTYINNYFRSYPEIQSYMENIKAYAKT-------------------------- 741 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 + GR +D+ ++ T R Q S DI+ M++ Sbjct: 742 HGYTRTIFGRKCFVKDINSDNV---TARNFSERAAINAPL------QGTSADIIKMSMIH 792 Query: 617 ATKA--GYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + + ++ +M + +PLK + + Sbjct: 793 LFDKLKNGSLILQVHDELLFEILEEQVDDAVKIIREVMENIVK--LSVPLKVDFNIGDNW 850 >gi|755588|gb|AAA85558.1| DNA polymerase [Geobacillus stearothermophilus] Length = 954 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 83/671 (12%), Positives = 179/671 (26%), Gaps = 147/671 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82 ++ A + + V L + F+ V Sbjct: 404 HHAPIVGIALA--NERGRFFLRPETAVADPKFLAWLGDETKKKT----MFDSKRAAVALN 457 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK--LSSQKMEEGKELIARFCKGETHE 140 +++ + L + L +A + KM + + + + Sbjct: 458 GKGIELAGVGVV------FDLLLAAYLLDPAQAAGDVAAVAKMHQYEAVRSDEAVYGKGA 511 Query: 141 CLYDRNKPNHREAWRLFGEYCKG----DVTVTREIFKRLEPLSSKEQELWY--LDQTIND 194 R P+ + + E+ + + E E + + Sbjct: 512 ---KRTVPDEPTLAEQLVRKAAAIWALEEPLMDELRRNEQDRLLTELEHALAGILANMEF 568 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 G VD + + + +++ + L + ++L T LF + L + Sbjct: 569 TGVKVDTKRLEQMGAELTEQLQAVERRIYELAGQ-EFNINSPKQLGTVLFDKLQLPVLKK 627 Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQF 310 T+ +T VL + + R + + L++ ++ G++ Sbjct: 628 TKTGYSTSADVLEKLAPHHEIVEHILHYRQ-LGKLQSTYIEGLLKVVHPVTGKVHTMFNQ 686 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 ++TGR S QN+P + +R + Sbjct: 687 A-LTQTGRLSSVEPNLQNIPIRLEEGRK-------------------------IRQAFVP 720 Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 + AD + IE RVLA +A + ++AF D++ T F+V+ VT + R Sbjct: 721 SEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRWLDIHTKTAMDIFHVSEEDVTANMR 780 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + G++ A Sbjct: 781 RQAKAVNF--------------GIVYGISDYGLAQ------------------------- 801 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + + V + + + Q +Q G Sbjct: 802 -----NLNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQ---KGYVTTLLH------- 846 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 R D+ + + T R +Q + DI Sbjct: 847 ----------------RRRYLPDITSRNFNVRTF---AERTAMNTP------IQGSAADI 881 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + + M++ + ++L HDE++ E P + L +M + +P Sbjct: 882 IKKAMIDLSVSVREERLQARLLLQGHDELILEAPKEEIGRLCRLVPEVMEQAVT--LRVP 939 Query: 663 LKAEGYESKRY 673 LK + + + Sbjct: 940 LKVDYHYGPTW 950 >gi|313885140|ref|ZP_07818892.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8] gi|312619831|gb|EFR31268.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8] Length = 887 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 93/651 (14%), Positives = 184/651 (28%), Gaps = 133/651 (20%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 + D Q K L + + +S ++ +L LD+ Sbjct: 342 IGLVWQDLDSHEIYLADWDQAIQSPAFKAWLADASNQKILFDSKRDQVILANA-GLDLAG 400 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF-CKGETHECLYDRNKPN 149 ++ + + L + L+ + Sbjct: 401 ID-FDIMIANYLIDTH-----LAKEL-ADMLTNNDMPSLVKYDEAVYGKGAKQAVPDSAE 453 Query: 150 HREAWRLFGEYCKGDVT-VTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHT 206 + + V +T+++ + E+ + + +G VD + Sbjct: 454 LNDHLANKVKAMGLLVEPLTQQLKDLHMWDLYQTIEMPLARVLARMEIQGVKVDAQILAD 513 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263 NQ + +++ E+ L + +++L LF + L + T+ +T VL Sbjct: 514 KNQALLERLAQMEAEIYDLAG-EEFNINSVKQLGVILFEKLELPIIKKTKTGYSTAADVL 572 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 P + R S+ L L + DG++ ++TGR S Sbjct: 573 EKLADKHPIIPAILEYRQ-ISKLQGTYLAGLPTYIKEDGKIHSRFVQ-TLTQTGRLSSAD 630 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLA 382 QN+P +R + + EG +L AD + Sbjct: 631 PNLQNIPARIEEGRR-------------------------IRQAFVPAHEGWQLFGADYS 665 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RVLA +A +Q + AF++GED++ T R F + P V Sbjct: 666 QIELRVLAHIAQDQHMIAAFKSGEDIHEATARRVFGLDPDTV------------------ 707 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 ++ A NF + + Sbjct: 708 -------------------------IDANLRRQAKAVNFGIVYGISDYGLSNNLNIPRKH 742 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + + + +K+ + + ++ ++ + Sbjct: 743 AKAFIENYFEKYPDIHQFMEDIVAEAKE--------------------------KGYVET 776 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 R D+ + R +Q + DI+ M+ A Sbjct: 777 LFKRRRYLPDIDASNF---NIRSFAERTAMNSP------IQGTAADIIKIAMVRIQDALD 827 Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 ++L+VHDE++ E P + S L +M S +PLK E Sbjct: 828 EKGLQSRLLLSVHDEVILEGPAEEMEVLSDLVPDIMESCVE--LDVPLKVE 876 >gi|332638560|ref|ZP_08417423.1| DNA polymerase I [Weissella cibaria KACC 11862] Length = 904 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 96/654 (14%), Positives = 188/654 (28%), Gaps = 124/654 (18%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 F ++ + ++ Q + L++ V N+ L+ L +P Sbjct: 358 VGFVIGNNEHGYFVSRDIELLVQGTPVNRILQDATVKKNVFNAKGTIVALRR-LGLTLPN 416 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 L++A +G AL + + + D + H Sbjct: 417 VA-FDLLLVAYLLDANDNNNDMG-ALAHENGYYAVRTDEEVYGKGAKFAIPEADEDLFEH 474 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 + +Y K + ++ + E L Y+ + G VD + Sbjct: 475 LGRKAMAIQYLKDPLMAKLTEHEQTQLYDDIELPLTYVLADMEATGITVDANTLLEMRSK 534 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267 + +L+Q + + + ++L LF E G T+ +T VL Sbjct: 535 LTERLAELEQTIYQQAGH-EFNVQSPKQLGVVLFEEMGYTPIKKTKTGYSTSVEVLEQMG 593 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P + R ++ + L+ ++ T ++TGR S Q Sbjct: 594 DV-PLVASILAYRQ-IAKIQSTYVEGLLRVIHGSDSKVHTRYLQTLTQTGRLSSVDPNLQ 651 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEA 386 N+P +R + E G +++ AD + IE Sbjct: 652 NIPVRIEEGRR-------------------------IRKAFVPREKGWRILSADYSQIEL 686 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA + G++ +AF GED++ T R F + P + Sbjct: 687 RVLAHITGDKHLQEAFINGEDIHAATARRIFGIGPDET---------------------- 724 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 + A NF + A +++ Sbjct: 725 ---------------------VDGNIRRQAKAVNFGIVYGISDFGLAKNIGVSRKQAKQI 763 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + +++ V E+ A + + + R Sbjct: 764 IDTYFEQYPGVKTWSEEIIAAARE--------------------------QGYVETIAHR 797 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620 D+ R +Q + DI+ M+N KA Sbjct: 798 RRYLPDIKAKNF---NLRSFAERTAMNSP------IQGSAADIIKIAMINMEKALRDAGL 848 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+++ L +M S +PL +E + + Sbjct: 849 QAKMLLQVHDELIFEAPESELPILHELVPRVMDSAMQ--LDVPLIVASHEGETW 900 >gi|229006922|ref|ZP_04164552.1| DNA polymerase I [Bacillus mycoides Rock1-4] gi|228754322|gb|EEM03737.1| DNA polymerase I [Bacillus mycoides Rock1-4] Length = 884 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 94/656 (14%), Positives = 189/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + + K+ L + ++ ++ LK Sbjct: 336 HKADIQGFG--IQNENGCYFIPSDVALKSEAFKKWLADDEMRKYTFDAKRAIVALKW-KG 392 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 ++I + L+ A K K ++ K + KG Sbjct: 393 IEIQGI-YFDLLIAAYLLDPADTDKDFRAVAK--MKETHAVKSDEEVYGKGAKRAVPAQD 449 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V + ++ E + E L + + +G VD Sbjct: 450 IVAEH-VARKVHVLYDVQKTFVEELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERL 508 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 ++ + +++QE+ L + ++L LF L + T+ +T Sbjct: 509 RSMGDELAGRLKEMEQEIYELAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 567 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + ++ + R + + L++ ++ D T ++TGR S Sbjct: 568 VLDKLMEHHEIIPKILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 626 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R I EG + AD Sbjct: 627 TDPNLQNIPIRLEEGRK-------------------------IRQAFIPSKEGWVMYAAD 661 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 662 YSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV 721 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A + + + + + + Sbjct: 722 YGIS-----DYGLSQNLGITRKAAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYVSTL-- 774 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 775 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 794 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 795 --------------AERTAMNTPIQG---SAADIIKKAMIIM----AD-------RLEEE 826 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 827 GLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSSGPTW 880 >gi|82617846|gb|ABB84840.1| PolI DNA polymerase [uncultured delta proteobacterium DeepAnt-32C6] Length = 857 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 95/671 (14%), Positives = 189/671 (28%), Gaps = 147/671 (21%) Query: 30 VILFAFGFDDHPVELWDCVH-----DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84 ++ V +L+ LE++ V H+S R +L Sbjct: 303 LVGVGLAPAPGEAFYVPLVASDGGLGEGALALLRGWLEDSARLKVVHDSKRLRVLLARY- 361 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLY 143 + + + + + + + K + R Sbjct: 362 GVSLS-GVVADPRLESFLVDPTG---------LVPHRIDQLVKAFLQRTVPPAKSVLGSG 411 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTIN 193 + + A + G + V ++ ++ + + L + T+ Sbjct: 412 KKARRFAELAASVTGAWACQRADVVVTMWPQIRERLEEVDQLPHLQEVDLPLSEVLATME 471 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G V+ ++ +L+ E+ + ++L LF E L + Sbjct: 472 LAGVRVEPTELEEMSAEFRATLLQLEAEIWRQAG-REFNVASPKQLGVVLFEELNLPVIK 530 Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQ 309 T+ +T VL + P A + +R + ++ L A+N GR+ T Q Sbjct: 531 RTKTGYSTAAEVLERLTREHPIAGLLLQHR-KLAKLLTTYTEVLRAAINPVTGRVHPTFQ 589 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 A+ TGR Q P + + +R I Sbjct: 590 QTYAA-TGRLISTNPDIQKTPVRTPEGKR-------------------------IRRAFI 623 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 + G +++ AD + IE R+LA + + L+AF ED++ T A F P VT QR Sbjct: 624 PAPGWRIISADWSQIELRLLAHFSSDPNLLEAFAQDEDVHRRTAAELFGCVPEAVTDAQR 683 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 ++ K + A + Sbjct: 684 SVAKTVNFATI--------------------------------------------YGQGA 699 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 T + + Q ++ V E L + E + +G Sbjct: 700 TALGQRLGLKRTEAKGYISRYFQAYAGVREW---LDRTIEGALASGYVETLL-------- 748 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 GR V ++ +N + + + +Q + D+ Sbjct: 749 ---------------GRRRVIPELSSNSAMVRQVGMR---------MAANTPIQGSAADL 784 Query: 610 LAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLP 662 M+ K ++L +HDE+V E + ++ M S +P Sbjct: 785 CKLVMLTLAKRFQTRGLQTRMLLQIHDELVFEAAPDEVDASCQLIREAMESVGD--LRVP 842 Query: 663 LKAEGYESKRY 673 L+ + Sbjct: 843 LRVHIGVGANW 853 >gi|187736420|ref|YP_001878532.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835] gi|187426472|gb|ACD05751.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835] Length = 945 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 95/688 (13%), Positives = 190/688 (27%), Gaps = 146/688 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64 D ET L ++ +F + H P + ++ LE Sbjct: 381 CFDTETTGLNPLMDN----------LLGVSFCAEPHKAWYMPV-SGPADLEAVRPLLEGP 429 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQK 122 + H+ F+ VL + + + TL+ + + E L Sbjct: 430 A-EKIGHHLKFDLEVL-RANGIHVK-GPFFDTLLAHALIAPGMKHGMDVLAE--NLLQYS 484 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181 + K+ R + G+Y D +T ++ L+ + Sbjct: 485 TIKLKD--------IAAPGAKKRELDTSGVPVEVMGKYSAEDADITLQLSAVLKRQVKES 536 Query: 182 ---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L + + G V + V L + +E + + Sbjct: 537 GMEKLFRTVELPLLPVLADMEFSGIRVLPESLEKASVKVGAIIDGLRERIEEAAGHPL-N 595 Query: 233 SRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 ++L +LF E L T+T T + LS+ P + R + Sbjct: 596 LNSPKQLGDFLFGELELVKKPKKTKTGQFVTDEDTLSALAPQHPIIADILAYR-ENMKLK 654 Query: 288 VLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 L+ L + + DGR+ + + TGR + QN+P + Sbjct: 655 STYLDALPKYICPRDGRIHTQFHQM-LTATGRLASQDPNLQNIPVRTEQGR--------- 704 Query: 347 PTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +R+ + SE ++ AD + IE R++A ++G+ AF G Sbjct: 705 ----------------LIRTAFVPASEKYTMLSADYSQIELRIMAALSGDPAMCGAFREG 748 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D++ T AR + + QV R K + + Y A + L Sbjct: 749 RDIHTETAARVYGIPRDQVDAVMRRAAKTVNFGIIYGISA-----FGLSQRLGCPRGEAA 803 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + ++ ++F + + + +G R+ + + Sbjct: 804 TLIENYFTQFPVVKSFMEDLVHKAEQAGYAETLLGR--RRMIPEINSANKTIKS---AAE 858 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + T G A K + + + K RS + + + Sbjct: 859 RTAINTPIQGTAADMIKIAMIHVDKLLKGT----------RSRLILQIHDEL-------- 900 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +++ + DE+ Sbjct: 901 ----------------------------LVDLHR----------DEL---------DLIP 913 Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + M S G+P+ E + Sbjct: 914 KIEEAMVSALPLPNGVPILVEARTGGNW 941 >gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB] gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB] Length = 901 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 98/673 (14%), Positives = 191/673 (28%), Gaps = 141/673 (20%) Query: 28 VCVILFAFGFDDHPVELWDCVHD-----------PVMPQVLKEALENTDVTIVAHNSYFE 76 +I A G D + VL L + + +V H+ Sbjct: 338 AELIGVALGLDSGNAGYIPLEPGAAEKSASSLSEEQVFPVLFPFLADKKIALVGHDLKTV 397 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136 VL + + + + T+V A +LS + + K Sbjct: 398 LIVLSQ-KGVKVQ-NPLLDTMVAAYILNPAR------RGYELSEIVQDYLHRQVEPLRK- 448 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELW 186 + ++ V E+ L + E L Sbjct: 449 -KLVGGSSPKQSPASFPPERLRDFACRRVEAIGELASTLIEKMEETGLRELFDSVEMPLV 507 Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + + ++G +D+ L ++Q + + + ++ +L + ++L+T LF + Sbjct: 508 AVLAAMEEKGVLLDLHLLKEMSQELGHLLSLSEAKIYALAG-ERFNIASPKQLQTILFEK 566 Query: 247 TGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDG 302 L T+ +T VLS+ ++ R ++ ++ L +N G Sbjct: 567 LNLPKGKKTKGGYSTDVEVLSNLALNHELPAEILAYR-SMAKLKSTYIDALPSLINIRTG 625 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 R+ + A+ TGR S QN+P + + Sbjct: 626 RIHTSYNQTVAA-TGRLSSSNPNLQNIPIRTLEGKR------------------------ 660 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R IA G +V AD + IE RVLA ++ + + AF GED++ T A F V P Sbjct: 661 -IRQAFIAPPGWAIVSADYSQIELRVLAHLSEDPVLINAFAAGEDIHSRTAADVFGVFPE 719 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 + + R KV+ + Y A + L + + +++E + + Sbjct: 720 MINAEMRRQAKVINFGVLYGMSA-----FGLSRELGIPQKQAQAYIDGYFKKYESVKTYL 774 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + + E + R + V +L + G A K Sbjct: 775 DGILQQARERGYVTTLLNR--RRYLPEINSVNPAVRQL---AERMAINAPIQGTAADLIK 829 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 + + + ++K Sbjct: 830 MAMLRIADLIREKGM--------------------------------------------- 844 Query: 603 QAVSRDILAEGM-MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKG 660 M M +V E P ++ L M Sbjct: 845 --------KSAMTMQVHDE-----------LVFEVPQEEKIALMNLVRQEMEGVVE--LK 883 Query: 661 LPLKAEGYESKRY 673 +PLK + + + Sbjct: 884 VPLKVDIASGRNW 896 >gi|228999367|ref|ZP_04158946.1| DNA polymerase I [Bacillus mycoides Rock3-17] gi|228760312|gb|EEM09279.1| DNA polymerase I [Bacillus mycoides Rock3-17] Length = 877 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 94/656 (14%), Positives = 189/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + + K+ L + ++ ++ LK Sbjct: 329 HKADIQGFG--IQNENGCYFIPSDVALKSEAFKKWLADDEMRKYTFDAKRAIVALKW-KG 385 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 ++I + L+ A K K ++ K + KG Sbjct: 386 IEIQGI-YFDLLIAAYLLDPADTDKDFRAVAK--MKETHAVKSDEEVYGKGAKRAVPAQD 442 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V + ++ E + E L + + +G VD Sbjct: 443 IVAEH-VARKVHVLYDVQKTFVEELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERL 501 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 ++ + +++QE+ L + ++L LF L + T+ +T Sbjct: 502 RSMGDELAGRLKEMEQEIYELAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + ++ + R + + L++ ++ D T ++TGR S Sbjct: 561 VLDKLMEHHEIIPKILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 619 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R I EG + AD Sbjct: 620 TDPNLQNIPIRLEEGRK-------------------------IRQAFIPSKEGWVMYAAD 654 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 655 YSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A + + + + + + Sbjct: 715 YGIS-----DYGLSQNLGITRKAAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYVSTL-- 767 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 768 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 787 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 788 --------------AERTAMNTPIQG---SAADIIKKAMIIM----AD-------RLEEE 819 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 820 GLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSSGPTW 873 >gi|306835977|ref|ZP_07468969.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726] gi|304568143|gb|EFM43716.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726] Length = 882 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 90/632 (14%), Positives = 185/632 (29%), Gaps = 139/632 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113 + L + LE++ H + +L I ++ T + A + Sbjct: 372 KALVQWLESSA-PKYFHAAKAAFHMLA---GRGIELNGLAHDTALAAYILRPGQRTYELS 427 Query: 114 EAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + + + E ++ E D+ E++ Sbjct: 428 DVYQRHLQKSLGAASEQMSLL-----DNSSLVDQAAAIMELAEKLTT-ELQDIDS-FELY 480 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L + + G VDV + T + + ++ L + Sbjct: 481 T------DLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQERSARELAGDDKLN 534 Query: 233 SRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK--KLTPQAIQVFNNRMRASRSA 287 ++L+ LF + T+ +T + + P + +R + Sbjct: 535 LNSPKQLQKVLFETFDMPKTKKTKTGYSTAAKEIEQLAIKHPHPFLDHLLAHR-EYQKMK 593 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 L L++ + DGR+ T + TGR S QN+P + + Sbjct: 594 TT-LEGLIKTVQPDGRIHTTFNQ-TVTSTGRLSSTEPNLQNIPVRTEAGR---------- 641 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 +RS I EG +L+ AD + IE RV+A ++ + ++A++ GE Sbjct: 642 ---------------QIRSAFIVGEGFEQLMTADYSQIEMRVMAHLSADPGLIEAYKAGE 686 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 DL+ +R F+V QVT + R K M L GL+ + Sbjct: 687 DLHNFVGSRVFDVPVDQVTPELRRRVKAMSYGLV--------------YGLSAFGLSQQ- 731 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + + +++ ++ V + +++ + Sbjct: 732 -----------------------------LGIPAGEAKSIMESYFERFGGVKKYLDDVVE 762 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 + + GR ++ ++ Sbjct: 763 QARK--------------------------DGYTATLFGRRRYLPELNSDN---RLAREN 793 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEF 642 R +Q + DI+ M+ +A ++L VHDE+V E + Sbjct: 794 AERAALNAP------IQGTAADIIKVAMIRVDRALRDMKSRVLLQVHDELVVEVAPGEAD 847 Query: 643 NASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + M S +PL+ + Sbjct: 848 QVREILEREMDSAIE--LNVPLEVSAGAGTDW 877 >gi|254443055|ref|ZP_05056531.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235] gi|198257363|gb|EDY81671.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235] Length = 596 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 147/685 (21%), Positives = 225/685 (32%), Gaps = 128/685 (18%) Query: 6 IDFETRSP--IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 D ET D+ G+ Y D + F H P E Sbjct: 25 FDTETYYSKGYDIRSLGVDAYVADPRFDCYLASFWGPHGNFV--GHPSECPWE-----EF 77 Query: 64 TDVTIVAHNSYFERTVLKAC--FNL---DIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 D ++HN+ F+R V + I W + LA P L E L Sbjct: 78 NDCVWISHNARFDRAVFFRMKELGIVPAHIMPREWHDSAALAVYLQAPRNLAGAAEKL-- 135 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK-RLEP 177 G++ + +Y D + E++ + Sbjct: 136 ------LGEKPNKAIRDAMKGIQGGLLCHD------KAVLDYALDDARLACELWISHCDK 183 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 KE+ L L + G +D + + R E +L + + Sbjct: 184 WPKKERLLSQLTIEQGEYGVHLDQKRIREGIETLTQVRD---DEATNLPWFPRLKPSSPK 240 Query: 238 KLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 + + + T Q + + P + R V L T+ Sbjct: 241 AFAEACQQAR-IPIPNSTSEDDPQTQEWIERYGERYPWLKHMSEWRKANRMLKV--LETM 297 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGC-VFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 DG L L++ GA TGRW+G QN R + + Sbjct: 298 QSRCRRDGSLPFGLKYFGAIATGRWAGDAGLNFQNFNREAYYGVDP-------------- 343 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE---TGEDLYV 410 R C++A G KL++ADL+ IE RVLAW+AG++ + Sbjct: 344 -----------RKCLVARPGHKLIIADLSQIEPRVLAWIAGDRELFDKIRNGLPIYQAHA 392 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + + + K + LGY G K FQ +A GL ++ Sbjct: 393 ETSMNWKGGDLKKENSNLYLLAKCRVIGLGYGAGCKTFQSLARGYGLEMSIGE------- 445 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 +R +R+ + R+ LW + + Sbjct: 446 --------------------------------AKRTVDDFRKANPRIVSLWQAVEDSMRY 473 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 I + + LPS RS+ Y DV TT R R Sbjct: 474 HI----------------------GSTFFMYLPSLRSIRYFDVQEEEGLTATTERGGRRL 511 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650 + YGGKLTEN+VQA +RD+ AEG++ KAG I+ TVHDE++CE P+ + + L Sbjct: 512 HWYGGKLTENLVQATARDVFAEGLLRIHKAGIRILWTVHDEVICEVPENSDITVETVTDL 571 Query: 651 MTSNPSWAKGLPLKAEGYESKRYRK 675 + P W GLP+ AEG E+ Y K Sbjct: 572 LAQTPDWIPGLPVAAEGIETSCYTK 596 >gi|289674485|ref|ZP_06495375.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5] Length = 780 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 83/476 (17%), Positives = 153/476 (32%), Gaps = 75/476 (15%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +D+ R T++ + + + + K Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G Y + +T + + + Sbjct: 457 YLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 516 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T +T + VL+ + +V S+ + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ + A TGR S QN+P + Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 T A F V VT D R K + L Y A + ++ Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSA-----FGLAKQIGVDRKQSQAY 780 >gi|78045179|ref|YP_360471.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901] gi|77997294|gb|ABB16193.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901] Length = 831 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 105/651 (16%), Positives = 182/651 (27%), Gaps = 159/651 (24%) Query: 38 DDHPVELWDCVHDPVMPQVL--KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 D + + + ++ K+ + + I H L+ Sbjct: 321 DGEKTKFYSLDRLNEIEEIFRNKKIITDDAKGIY-H------VCLEKGLTF---PEVCFD 370 Query: 96 TLVLARSNGL-PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 + A G LK E+ I + +E Sbjct: 371 ARIAAYVLNPADQNPGLKGLYLKYDLPVYEDVSLNIRGLFYLKKEMMKKI----FEQEQE 426 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 RLF E E L + + G VD ++ + + Sbjct: 427 RLFYE---------------------IELPLTPVLAQMEHTGIQVDREALKEMSLELGEQ 465 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTP 271 +L +E+ L + +L LF + GL + T+ +T VL Sbjct: 466 IEELIREIYVLAG-EEFNLNSPRQLGVILFEKLGLPVIKKTKTGYSTDAEVLEELLPFHE 524 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 ++ N R + + L+ +N G+L T G + TGR + QN+P Sbjct: 525 IIGKILNYRQ-LMKLKSTYTDGLMPLINERTGKLHTTFNQTG-TLTGRLASSEPNLQNIP 582 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVL 389 +L R I S G +V AD + IE R+L Sbjct: 583 IRLELGRKL-------------------------RKMFIPSPGYDYIVSADYSQIELRLL 617 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A + E ++A++ GED++ T + F V+ +VT + RA K + + Y Sbjct: 618 AHFSEEPKLIEAYQKGEDIHRKTASEVFGVSLEEVTPEMRAHAKSVNFGIVYGIS----- 672 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 L + + + + + E Sbjct: 673 DFGLGRDLKIPREVAGKYIKNYFANYPKVREYLDELVRTAREKGYVTTLF---------- 722 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 +RR +P + K Sbjct: 723 -------------------------------GRRRYIPELSSKNRTVQGF---------- 741 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623 R+ +NT +Q + DI+ M+N K Sbjct: 742 -----GERTAMNT------------------PLQGSAADIIKLAMINVEKELKARKLKSR 778 Query: 624 IVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L+VHDE+V E P + L +M S +PL AE K + Sbjct: 779 LLLSVHDELVLEVPAEELEEVKALVKGVMESVVE--LKVPLIAEVGAGKNW 827 >gi|331091047|ref|ZP_08339889.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405269|gb|EGG84805.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium 2_1_46FAA] Length = 871 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 80/670 (11%), Positives = 177/670 (26%), Gaps = 159/670 (23%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN-----TDVTIVAHNSYFERT 78 +A+ + FDD + + + LK+ +E V+I N Sbjct: 337 FADAAEINHIGVSFDDEKIYTIY-TGEEITFSYLKKKIEELTACVKTVSIC--NIKEALK 393 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCK 135 + ++ + A + V Q + + K Sbjct: 394 WITFA-----NETSAFDPIIASYLLNPLKSDYAFEDVAR-----EQLNILIDDKMEEARK 443 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL--DQTIN 193 ++ + + ++ + E+ + Sbjct: 444 SCYTAYTAYKSVFFLSD-----------------RLKEKKMEHLFTDIEMPLAFTLFDME 486 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G V Q + + +L+ E+ + + ++L LF L Sbjct: 487 QAGVKVKAEELKVYGQQLGGKINELETEIYEIAG-ETFNINSPKQLGVVLFEHLNLPNGK 545 Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+ +T VL P ++ R ++ + L + DGR+ G Sbjct: 546 KTKTGYSTAADVLEKLAPDYPIVSKILEYRQ-LAKLKSTYADGLANFIQEDGRIHGKFNQ 604 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 + TGR S QN+P + +R + Sbjct: 605 -TVTATGRISSTEPNLQNIPVR-------------------------MELGRLIRKVFVP 638 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 E V AD + IE R+LA +G++ + A++ D++ T ++ F++ +VT +R Sbjct: 639 EEDYVFVDADYSQIELRILAHCSGDESLISAYKEARDIHRITASQVFHIPFDEVTDLERR 698 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + G++ + + Sbjct: 699 NAKAVNF--------------GIVYGISSFGLSQDLSI---------------------- 722 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + + + + ++ ++ Sbjct: 723 --------TRKEAGEYIDNYFKTYPGIKTFLDDTVAHAKE-------------------- 754 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 ++ GR ++ + + R +Q + DI+ Sbjct: 755 ------QGYVVTLFGRRRPVPELESGNFMQRSF---GERVAMNAP------IQGTAADIM 799 Query: 611 AEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 M+ + +VL VHDE++ E + + M S +PL Sbjct: 800 KIAMIGVNRTLKEKQMKSKLVLQVHDELLIEAYKDEVEEVKSILKREMEEAAS--LSVPL 857 Query: 664 KAEGYESKRY 673 + + + Sbjct: 858 DIDMHTGNSW 867 >gi|116333679|ref|YP_795206.1| DNA polymerase I [Lactobacillus brevis ATCC 367] gi|116099026|gb|ABJ64175.1| DNA polymerase I [Lactobacillus brevis ATCC 367] Length = 886 Score = 297 bits (761), Expect = 4e-78, Method: Composition-based stats. Identities = 99/662 (14%), Positives = 205/662 (30%), Gaps = 135/662 (20%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85 + F G +D W D + Q LK LEN D+ ++ L+ Sbjct: 340 AELAGFVIGHNDQ----WWVSRDTALLQQAPLKGLLENADIAKQVFDAKRTFVALQR--- 392 Query: 86 LDIPIHRWICTLVL-ARSN---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 L + + C L+L + + L + +E + Sbjct: 393 LAVTLTGVDCDLLLGSYLLNTYDNSNDLGRLAMEHGYHQVATDEDVYGKGAKAAIPDDDD 452 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 ++ + A D ++ + E + ++ + G V+ Sbjct: 453 VFFSHLARKARAIEQLRPQIFKD----LADNEQTDLYRDIELPMAFVLARMEVAGITVEA 508 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 + + + +++Q + + + ++L LF + GL + T+ +T Sbjct: 509 SELEAMGSKFTEQLAEIEQTIYNEAG-EEFNIGSPKQLGHILFEKMGLPVIKKTKTGYST 567 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL P A + R + ++ + L++ ++ D + T ++TGR Sbjct: 568 AVGVLEKLAAEAPIAENILKYR-KIAKIQSTYVEGLLKVIHPDDQKVHTRYLQTLTQTGR 626 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377 S QN+P + +R + S ++ Sbjct: 627 LSSVDPNLQNIPVRNEEGRA-------------------------IRKAFVPSHPDWEIF 661 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVME 436 +D + IE RVLA M+ ++ +AF G+D++ T R F + +VT + R K + Sbjct: 662 SSDYSQIELRVLAHMSHDKQMQEAFREGQDIHAATARRIFKMGPDEEVTPNIRRQAKAVN 721 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y + + ++ ++ EE+ + + M + E + Sbjct: 722 FGIVYGIS-----DFGLSQNIGISRKQAKAFIDTYFEEYPGVKAYTERMVQQAHELGYVE 776 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 A +RR +P + + Sbjct: 777 TI-----------------------------------------AHRRRYLPDINSRNFNQ 795 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R+ +NT +Q + DI+ M+ Sbjct: 796 RSF---------------AERTAMNT------------------PIQGSAADIIKIAMIR 822 Query: 617 ATKA----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 +A ++L VHDE++ E P ++ + L +M S +PLK E + Sbjct: 823 MEQALKDMQATMLLQVHDELIFEAPASEIDTLAKLVPSVMDSAIE--LEIPLKVESHYGP 880 Query: 672 RY 673 + Sbjct: 881 TW 882 >gi|210612532|ref|ZP_03289350.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787] gi|210151537|gb|EEA82544.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787] Length = 872 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 95/683 (13%), Positives = 200/683 (29%), Gaps = 170/683 (24%) Query: 17 TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL---------KEALENTDVT 67 TK + + + + F + ++ + ++L + L DV Sbjct: 330 TKNVLPLFVNEAGLTGVGLAFGKEDIYVFTTEQGMEISELLEQVETLSKEVDVLAIADVK 389 Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 N+ + ++ T+V A LK E+ ++ + ++ Sbjct: 390 ----NAM--------QYIPNVNQSVCFDTIVAAYLLNP---LKNDYESADIAREYLDI-- 432 Query: 128 ELIARFCKGETHECLYDRNKPNHREA-WRLFGEYC----KGDVTVTREIFKRLEPLSSKE 182 LI D +++ + + Y D + + E Sbjct: 433 -LID------------DNQIDEAQKSCYEAYTAYESSKILRD-----RLKETEMEQLFDE 474 Query: 183 QELWYL--DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E+ + + G V H + + + L++++ LT + ++L Sbjct: 475 IEMPLVFTLYDMEQNGVKVAAEALHIYGEQLGQKIVDLEKDIYELTG-ETFNINSPKQLG 533 Query: 241 TWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + GL T+ +T +L P ++ R ++ + L Sbjct: 534 VILFEKLGLPHGKKTKTGYSTSADILDKLAPEYPVVSKILEYRQ-LTKLKSTYADGLAGY 592 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 + DGR+ G + TGR S QN+P Sbjct: 593 IKDDGRIHGKFNQ-TITATGRISSTEPNLQNIPVRMELGR-------------------- 631 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R I +G V AD + IE R+LA +G++ + A++ D++ T ++ F Sbjct: 632 -----LIRKVFIPEDGYVFVDADYSQIELRILAHCSGDEQLINAYKEARDIHRITASQVF 686 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 + +VT QR K + G++ + + Sbjct: 687 HTPFEEVTDLQRRNAKAVNFG--------------IVYGISSFGLSQDLSI--------- 723 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 + +++ + + + L A E ENG Sbjct: 724 ---------------------TKKEAAQYIESYFETYPSIKGF---LDDAVEHAKENGYV 759 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 GR ++ ++ + R Sbjct: 760 TTV-----------------------FGRRRPVPELSSSNFMQRSF---GERVAMNAP-- 791 Query: 598 TENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-L 650 +Q + DI+ M + +VL VHDE++ E + + + + Sbjct: 792 ----IQGTAADIMKIAMNGVNRRLKENNMRSKLVLQVHDELLIEAYEEELEDVKEILSHE 847 Query: 651 MTSNPSWAKGLPLKAEGYESKRY 673 M + +PL+ + + K + Sbjct: 848 MVNAAK--LHVPLEVDMHTGKNW 868 >gi|225374419|ref|ZP_03751640.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM 16841] gi|225213657|gb|EEG96011.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM 16841] Length = 907 Score = 297 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 79/673 (11%), Positives = 184/673 (27%), Gaps = 152/673 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF---ER-------T 78 + A F + + + + L + + + Sbjct: 355 EFLGMAVCFGEKDTYFF--KAGEELTSSVLSDLLTHSEA-----AGYMTLDLKPQLGLLH 407 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEAL---KLSSQKMEEGKELIAR 132 +++ N + ++ A + + + + S+ GK Sbjct: 408 MIEQRENGCLNQKNIFDNVIAAYLLNPLKNEYPYEDIAKDYCSLMIPSRVDLLGKS--GY 465 Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL--DQ 190 + + + + + + E+ + E+ + Sbjct: 466 DLAMDEKPEGFLKTVCFMA-----YTAFSSKKA-MMEELKATGMEQLYETIEMPLVFTLA 519 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G +D A + + V +L+ + + ++L LF + + Sbjct: 520 DMEHTGIAIDAANLKEYGEKLAVRIKELETRIYQEAG-EEFNINSPKQLGVILFEKLEMP 578 Query: 251 LEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 T+ +T VL P + R ++ + L + DGR+ + Sbjct: 579 YGKKTKTGYSTAADVLDKLAPEYPIVADILEYRQ-LTKLKSTYADGLANYIKEDGRIHTS 637 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 + TGR S QN+P +R Sbjct: 638 FNQ-TITVTGRLSSTEPNLQNIPMRIELGR-------------------------LIRKA 671 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + ++G + AD + IE RVLA M+G++ ++A+ +D++ T ++ F++ +VT Sbjct: 672 FLPAKGCVFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDL 731 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 QR K + + Y + L+ Sbjct: 732 QRRNAKAVNFGIVYG-----ISSFGLSQDLS----------------------------- 757 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + + + + ++ + L E +NG Sbjct: 758 ----------ISKKEAAEYIERYFETYPKIKTFLDGL---VEDAKKNGYVTTM------- 797 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 GR ++ ++ + R +Q + Sbjct: 798 ----------------FGRRRPVPELSSSNFMQRSF---GERVAMNAP------IQGTAA 832 Query: 608 DILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKG 660 DI+ M+ +++TVHDE++ ET + + + M Sbjct: 833 DIIKIAMIRVHDRLLEEHLKSRLIITVHDELLIETAEDEIDRVKEILTEGMQQAAD--LK 890 Query: 661 LPLKAEGYESKRY 673 + L + + K + Sbjct: 891 VALAIDLHTGKNW 903 >gi|12001930|gb|AAG43108.1|AF051319_1 DNA polymerase I [Streptomyces griseus] Length = 889 Score = 297 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 101/658 (15%), Positives = 193/658 (29%), Gaps = 146/658 (22%) Query: 34 AFGFDDHP-----VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 A F D VEL D + + L + L + D H + +L I Sbjct: 355 AIAFVDQERHGLQVELGDLSAEDD--KALAQWLAS-DTPKYFHEAKAAFHMLA---GRGI 408 Query: 89 PIHRW-ICTLVLARSNGLPSALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRN 146 + T + A A+ + + + + E ++ Sbjct: 409 ELAGIAHDTALAAYLLRPGQRTYALADVYQRHLQKTLSAATEQLSLLDNS---------- 458 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 +T + E + E L + + G VDV + T Sbjct: 459 ---SLVDQAAAIMELAERLTAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDILET 515 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263 + + ++ L + ++L+T LF L T+ +T + + Sbjct: 516 QKDAFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAKEI 575 Query: 264 SSNK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 P + +R + + L L++ + DGR+ T A TGR S Sbjct: 576 EQLAAKNPHPFLDHLLAHR-KYQKMKTT-LEGLIKTVQPDGRIHTTFNQTVA-STGRLSS 632 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVAD 380 QN+P + + +RS I +G +L+ AD Sbjct: 633 TEPNLQNIPVRTEAGR-------------------------QIRSAFIVGDGFDELMTAD 667 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RV+A ++ + ++A++ GEDL+ +R F+V QVT + R K M L Sbjct: 668 YSQIEMRVMAHLSADPGLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLV 727 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 GL+ + Sbjct: 728 --------------YGLSAFGLSQQ------------------------------LGIPA 743 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + +++ ++ V + +E+ + + Sbjct: 744 GEAKSIMESYFERFGGVKKYLDEVVAQARK--------------------------DGYT 777 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 GR ++ ++ R +Q + DI+ M+ +A Sbjct: 778 ATLFGRRRYLPELNSDN---RLARENAERAALNAP------IQGTAADIIKVAMIRVDRA 828 Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + + M S +PL+ K + Sbjct: 829 LQGMKSRVLLQVHDELVVEVAPGEADEVREILEREMDSAIE--LNVPLEVSAGAGKDW 884 >gi|30022662|ref|NP_834293.1| DNA polymerase I [Bacillus cereus ATCC 14579] gi|29898220|gb|AAP11494.1| DNA polymerase I [Bacillus cereus ATCC 14579] Length = 891 Score = 297 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 95/656 (14%), Positives = 188/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K K ++ K + KG + Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFCTVAK--MKETHAVKSDEEVYGKGAKRAVPELK 456 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V + ++ E + E L + + +G VD Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 575 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|255324619|ref|ZP_05365736.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141] gi|255298525|gb|EET77825.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141] Length = 879 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 102/658 (15%), Positives = 193/658 (29%), Gaps = 146/658 (22%) Query: 34 AFGFDDHP-----VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 A F D VEL D + + L + L + H + +L I Sbjct: 345 AIAFVDQERHGLQVELGDLSAEDD--KALAQWLASDA-PKYFHEAKAAFHMLA---GRGI 398 Query: 89 PIHRW-ICTLVLARSNGLPSALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRN 146 + T + A A+ + + + + E ++ Sbjct: 399 ELAGIAHDTALAAYLLRPGQRTYALADVYQRHLQKTLGAATEQLSLLD------------ 446 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 + +T + E + E L + + G VDV + T Sbjct: 447 -DSSLVDQAAAILELAERLTAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDILET 505 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263 + + ++ L + ++L+T LF L T+ +T + + Sbjct: 506 QKDAFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAKEI 565 Query: 264 SSNK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 P + +R + L L++ + DGR+ T A TGR S Sbjct: 566 EQLAAKNPHPFLDHLLAHR-EYQKMKTT-LEGLIKTVQPDGRIHTTFNQTVA-STGRLSS 622 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVAD 380 QN+P + + +RS I +G +L+ AD Sbjct: 623 TEPNLQNIPVRTEAGR-------------------------QIRSAFIVGDGFDELMTAD 657 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RV+A ++ + ++A++ GEDL+ +R F+V QVT + R K M L Sbjct: 658 YSQIEMRVMAHLSADPGLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLV 717 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 GL+ + Sbjct: 718 --------------YGLSAFGLSQQ------------------------------LGIPA 733 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + +++ ++ V + L + Q ++G Sbjct: 734 GEAKSIMESYFERFGGVKKY---LDEVVVQARKDGYTATL-------------------- 770 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 GR ++ ++ R +Q + DI+ M+ +A Sbjct: 771 ---FGRRRYLPELNSDN---RLARENAERAALNAP------IQGTAADIIKVAMIRVDRA 818 Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + + M S +PL+ K + Sbjct: 819 LQGMKSRVLLQVHDELVVEVAPGEADEVREILEREMDSAIE--LNVPLEVSAGAGKDW 874 >gi|228993314|ref|ZP_04153230.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442] gi|228766382|gb|EEM15025.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442] Length = 877 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 94/656 (14%), Positives = 188/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + + K+ L + ++ ++ LK Sbjct: 329 HKADIQGFG--IQNENGCYFIPSDVALKSEAFKKWLADDEMRKYTFDAKRAIVALKW-KG 385 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 ++I L+ A K K ++ K + KG Sbjct: 386 IEIQGID-FDLLIAAYLLDPADTDKDFRAVAK--MKETHAVKSDEEVYGKGAKRAVPAQD 442 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V + ++ E + E L + + +G VD Sbjct: 443 IVAEH-VARKVHVLYDVQKTFVEELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERL 501 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 ++ + +++QE+ L + ++L LF L + T+ +T Sbjct: 502 RSMGDELAGRLKEMEQEIYELAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + ++ + R + + L++ ++ D T ++TGR S Sbjct: 561 VLDKLMEHHEIIPKILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 619 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R I EG + AD Sbjct: 620 TDPNLQNIPIRLEEGRK-------------------------IRQAFIPSKEGWVMYAAD 654 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 655 YSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A + + + + + + Sbjct: 715 YGIS-----DYGLSQNLGITRKAAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYVSTL-- 767 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 768 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 787 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 788 --------------AERTAMNTPIQG---SAADIIKKAMIIM----AD-------RLEEE 819 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 820 GLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSSGPTW 873 >gi|326803837|ref|YP_004321655.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a] gi|326651542|gb|AEA01725.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a] Length = 888 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 91/660 (13%), Positives = 198/660 (30%), Gaps = 137/660 (20%) Query: 32 LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 L + + Q K +E+ V +++ + +LK L + + Sbjct: 344 LIYVVWGNKDHIYLASPDLVRESQAFKNWIEDPHAKKVLYDAKRSQVILK---GLGMDLE 400 Query: 92 RW-ICTLVLARSN---GLPSALKAVGEALKLSSQ-KMEEGKELIARFCKGETHECLYDRN 146 L+ + L + V L E + E LYD Sbjct: 401 GVSDDVLIASYLIHARDLSGDVANVAREFNLDYLAYDSEVYGKGKKVAVPEDKTRLYDHL 460 Query: 147 KPNHREAWRLF-GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 L + + E+++++E L + + G VD + Sbjct: 461 VAKVSVINDLLPIIKDRLEADEMVELYRKIE------LPLAQVLAKMEIMGISVDRSRLV 514 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQR 261 L+Q + + +L +E+ + ++L LF + GL T++ T Q Sbjct: 515 GLSQSYEEQLDQLQEEIYREAGV-EFNINSTQQLSKVLFEDMGLKGGKKTKSGNYSTAQS 573 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 L + + P + R ++ + +++ ++ DG++ + TGR S Sbjct: 574 ELEKLQGV-PIIDLILAYRQ-LAKLQSTYVQGILDYIHQDGKVHSRFIQ-TLTTTGRLSS 630 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVAD 380 QN+P + + +R + S + +D Sbjct: 631 ADPNLQNIPIRTEEGRK-------------------------IRQAFVPSHPDWVIFSSD 665 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA ++G+ +AF+ +D++ T A+ F+ ++KD+R K + Sbjct: 666 YSQIELRVLAHVSGDPHLQEAFKENKDIHTATAAKVFHKDEKDISKDERRQAKAVN---- 721 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 G++ + + Sbjct: 722 ----------FGIVYGISDYGLSQNLSI------------------------------SR 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + + + +V+E ++ + + Sbjct: 742 QEAKAFIDKYFEIYPKVAEYMDKSVEIAREA--------------------------GYA 775 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R D+ R +Q + DI+ M+ +A Sbjct: 776 KTLFNRRRYLPDLKAKN---YNVRSFAERTAMNSP------IQGTAADIIKVAMVEMDQA 826 Query: 621 ------GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++L VHDE++ E D + A+++ +M + S +PL + + Sbjct: 827 LKEHQLQANLLLQVHDELIFEVAKEDLEDLAALVKDVMENAVS--LDVPLIVDSNYGSTW 884 >gi|227548116|ref|ZP_03978165.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM 44291] gi|227079778|gb|EEI17741.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM 44291] Length = 874 Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats. Identities = 95/630 (15%), Positives = 190/630 (30%), Gaps = 139/630 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEA 115 LK +E+ D H++ TV DI + T + A + + Sbjct: 366 LKVWVESED-PKYLHDAK---TVFHMLKGRDITLRGIAHDTAIAAYLLRPGQRTYELHDV 421 Query: 116 L-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + +++ G + ++ + E D+ E+ Sbjct: 422 YQRHLQRQLNLGGDQLSLLGDTSLVDSAAAV-LELAEELSAQLRGIDSYDLYADLEL--- 477 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 L + + + G VDV + + + ++++E L + Sbjct: 478 ---------PLVSILAEMENAGIAVDVDVLEAQLKDFTAKVAQVEEEARQLVDEPSLNLS 528 Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVL 289 ++L LF + L T+ +T + + + P ++ +R + Sbjct: 529 SPKQLSVVLFDKLELPKTKKTKTGYSTAAGEIEALAETNPHPFLDKLLAHR-EYQKMKST 587 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L++A+ +GR+ T + A TGR S QN+P + + + Sbjct: 588 -IEGLIKAVADNGRIHTTFKQTVA-STGRLSSTDPNLQNIPVRTEAGRK----------- 634 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 +RS G + L+ AD + IE RV+A ++ + ++A+ GEDL Sbjct: 635 --------------IRSAFTVGAGYECLLTADYSQIEMRVMAHLSQDSGLIEAYREGEDL 680 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +R F+V QVT + R K M L Y + L+ Sbjct: 681 HNFVGSRVFDVPIDQVTPELRRRVKAMSYGLVYG-----LSAYGLSNQLS---------- 725 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + + +++ ++ V L Sbjct: 726 -----------------------------ISAGEAKSIMESYFERFGGVKSY---LDNVV 753 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 EQ +G GR ++ ++ Sbjct: 754 EQARRDGYTSTV-----------------------FGRRRYLPELTSDN---RVARENAE 787 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNA 644 R +Q + DI+ M+ +A ++L VHDE+V E + Sbjct: 788 RAALNAP------IQGSAADIIKVAMIRVDRALESFNSRVLLQVHDELVVEIAPGELAEV 841 Query: 645 SMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + M S + +PL+ + Sbjct: 842 REIVEREMDSAITLL--VPLEVSAGTGVNW 869 >gi|319935865|ref|ZP_08010291.1| DNA polymerase I [Coprobacillus sp. 29_1] gi|319809132|gb|EFW05613.1| DNA polymerase I [Coprobacillus sp. 29_1] Length = 869 Score = 296 bits (758), Expect = 8e-78, Method: Composition-based stats. Identities = 92/659 (13%), Positives = 195/659 (29%), Gaps = 137/659 (20%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDI 88 V+ +A ++ D + Q L++ + ++N +L +DI Sbjct: 329 VLGYAL-YNKEQAFYIS-FEDALNDQDFLNYLKDEKYSKYSYNIK--AQILSARWNGIDI 384 Query: 89 PIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + + +K++ + S + EE F K Sbjct: 385 KGMN-FDLQLASYILNPSLKDEMKSICDYYDYDSVQYEE-----EVFGKLAKKHIPEIDL 438 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALA 204 H + Y D + + + + E + Y+ + G +D+ + Sbjct: 439 LARHTVSKAKAI-YDLKD-EAIQRLKDEEQFDLYQNLELPVTYILADMEYVGAKIDIHVL 496 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + ++++++ L + ++L LF GL T+ +T Q Sbjct: 497 KEMEMDFEQQIKQIEEDIYML-ADKEFNISSPKQLGEVLFERLGLPNGKKTKTGYSTSQD 555 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 +L + L P + R ++ + + L E + +DG++ ++TGR S Sbjct: 556 ILEKIEGLHPIIPLIQKYR-MLTKLSSTYVKGLQEQVFADGKIHTIYNQA-LTQTGRLSS 613 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 QN+P + +R I S LV D Sbjct: 614 IEPNLQNIPVRQEEGK-------------------------LIRKAFIPSHDY-LVTFDY 647 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R+LA +AG Q ++AF +D++ T A F V +VT + R K + Sbjct: 648 SQIELRILAHLAGVQSLIEAFNQDKDIHTHTAALVFKVKDEEVTANMRRQAKAVNFG--- 704 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 G+ + + Sbjct: 705 -----------IIYGMGEFKLSQQI------------------------------GVSLK 723 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 + + + +++ + +++ E G Sbjct: 724 EAKEFIRRYFEEYPEIKVYMDQI---VEDCKNTGYVSTVLN------------------- 761 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT--- 618 R + + + R+ + +Q DIL MM Sbjct: 762 ----RKRYIPTINDKNFMVREQARRF---------AMNSPIQGSGADILKLAMMKVNQLM 808 Query: 619 ---KAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++L VHDE++ + + ++ M +PLK +G + + Sbjct: 809 KDKHLKSEMILQVHDELIFDVYKDELDEMMKLIKSAMVEAFQ--MDVPLKVDGAYASNW 865 >gi|71274493|ref|ZP_00650781.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71164225|gb|EAO13939.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] Length = 567 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 218/573 (38%), Positives = 282/573 (49%), Gaps = 58/573 (10%) Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQI 210 W F EY + DV R++ KRL + EL W+LDQTINDRG VD LA Sbjct: 2 DWAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGA 61 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270 V+ + L E+LT G V ++ + L L E G+ L D+ + T +R L + L Sbjct: 62 VERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCL-DDPLLP 120 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 ++ + R +AS ++ K L+ + DGRLRGTLQF GASRTGRW+G +F P NLP Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180 Query: 331 RPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 RP+ S + I + D + + S +RSC+IA KKLVVADL+ IE RV Sbjct: 181 RPTLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRV 240 Query: 389 LAWMAGEQWKLKAFETGEDL---------------------------------------- 408 LAW+AGE KL AF + Sbjct: 241 LAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDI 300 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 Y YA SF +AP VTK QR IGKV ELALGY GG AF A+ ++L A Sbjct: 301 YKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL 360 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 P ++A +W + N AC+ K+AWR H ++ W L A Sbjct: 361 --PPLLLQEAVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWKALQFAA 418 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNTT- 583 I + + + M+ + L + LPSGR L Y D SY+ T Sbjct: 419 TDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHP 473 Query: 584 -TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 TR+ TR TYGGKL ENI QAVSRD+LA M AGY IVLTVHDEI+ E D F Sbjct: 474 MTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAF 533 Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 NA+ L LM + P WA+GLPL AEG+++ RYRK Sbjct: 534 NAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566 >gi|253682515|ref|ZP_04863312.1| DNA polymerase I [Clostridium botulinum D str. 1873] gi|253562227|gb|EES91679.1| DNA polymerase I [Clostridium botulinum D str. 1873] Length = 881 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 86/635 (13%), Positives = 185/635 (29%), Gaps = 163/635 (25%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGLPSALKAVGEALKLS 119 E+ ++ ++H+ VL+ DI T + + + Sbjct: 384 FEDKNIKKISHDIKNVYVVLRKY---DIDAKNFIFDTKIASYLLEPSKS----------- 429 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + E N + E ++ YC EI+++L+ Sbjct: 430 ------------DYILREIILEKLSINIDDSDEECKIKETYCIK------EIYEKLQKEI 471 Query: 180 SK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + E L + ++ G+ VD + + E L++E+ L Sbjct: 472 KEANMEELFYNVELPLTKVLASMECEGFKVDKDRLTEIGEKFKAEIKMLEKEIHKLAG-E 530 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + + ++L LF + L + T+ +T VL K P ++ + R ++ Sbjct: 531 DFNIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDSHPIISKIIDYRQ-ITKL 589 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + L ++ DG++ + + TGR S QN+P E Sbjct: 590 DSTYVEGLKHVIDEDGKIHSSFNQTVTT-TGRLSSTEPNLQNIPIKHEMGRE-------- 640 Query: 347 PTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +R +A+ E + AD + IE RVLA +A ++ + AF+ Sbjct: 641 -----------------IRKVFVANNEESVIFSADYSQIELRVLAHIANDEKLIDAFKHH 683 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 +D++ T + F V +VT R+ K + + Sbjct: 684 KDIHTITASEVFRVPVEEVTPLMRSNAKAVNFGIV------------------------- 718 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + + + ++ V + +++ Sbjct: 719 -------------------YGIGAFSLSKDINVSRKEAKEYIDTYFSRYPNVKKYIDDII 759 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 EQ + + R ++ + Sbjct: 760 NKSEQ--------------------------DGFVTTIMNRKRYIPEIQSRN---RIVRS 790 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDT 639 R +Q + DI+ M++ + ++L VHDE++ Sbjct: 791 FGERLAMNTP------IQGSAADIIKLAMVHVYEELIKRNLKSTLILQVHDELILNVYKD 844 Query: 640 DEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PL+A+ + Sbjct: 845 ELEEVKQMVVEKMEGVMNLL--VPLEADVNIGITW 877 >gi|223984403|ref|ZP_03634542.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM 12042] gi|223963645|gb|EEF68018.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM 12042] Length = 900 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 99/666 (14%), Positives = 183/666 (27%), Gaps = 151/666 (22%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV---LKACF 84 V A + D + L L IV ++ L Sbjct: 362 ADVHGLALAYQDQ-AVYIPIEDVRQ-DEALLAYLAGEKTKIV-----YDVKACLHLADGA 414 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 L I + ++ A S QK+ E L E + Sbjct: 415 GLTINGMKI-DAMIAAFLCDSTLT----------SDQKIREKFGLTETVTMDEVYGKPGK 463 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTIND 194 P +L + C + + ++K EP + L + + Sbjct: 464 MKLP----EPQLQRQLCAQKIQLIDALWKDSEPKLKEMEIVSLFYDVEMPLAAVLYKMEK 519 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 G +D + + L + + + ++L LF + GL Sbjct: 520 EGIRIDSQTLDDIARQTQARLDALTDAIYAAAG-ETFNINSPKQLGEVLFDKLGLPASGK 578 Query: 255 TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 +T VL + P + R + + L + ++ DGR+ A+ Sbjct: 579 KRSTSADVLEKLLGVHPIIADLLEFR-KYQKLYSTYAEGLKKYIHPDGRIHTIYNQC-AT 636 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374 +TGR S QN+ E VR + SEG Sbjct: 637 QTGRLSSTEPNLQNISVRDEESRE-------------------------VRKAFLPSEGN 671 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 LV +D + IE R+LA MA EQ L AF D++ T + F + QV R K Sbjct: 672 VLVASDYSQIELRMLAHMADEQGLLDAFRHAVDIHTKTASDVFQIPLDQVDAKHRRQAKA 731 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + G++ + + Sbjct: 732 VNFGIV--------------YGISDFGLSQQLDI-------------------------- 751 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + + + Q + +S+ +++ E+G Sbjct: 752 ----SRAQAKEFIERYLQSYPNISKYMDQVISF---CQEHGYTATML------------- 791 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 GR ++ + + R +Q + D++ M Sbjct: 792 ----------GRRREVPEIHDKNYMTREFGK---RAAMNAP------IQGSAADLIKLAM 832 Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEG 667 + KA ++L VHDE++ + ++ +++ M +PL AE Sbjct: 833 IRIDKAISEKGLQSKMILQVHDELIFDALPSELDALCAIIQEGMEHAME--LKVPLVAET 890 Query: 668 YESKRY 673 + Sbjct: 891 KIGDTW 896 >gi|116492456|ref|YP_804191.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745] gi|116102606|gb|ABJ67749.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745] Length = 887 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 91/625 (14%), Positives = 185/625 (29%), Gaps = 130/625 (20%) Query: 56 VLKEALENTDVTIVAHNSYFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 +K LE+ + I N F+ V + + L+ + + Sbjct: 366 KIKAILEDPKIKI---NV-FDSKRTYVGLHRLGIKLTAVN-FDILLQSYLLDTNDNSNDL 420 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 G+ + + KG NH + + Sbjct: 421 GQLAH--EHDYDAIDTDDDVYGKGAKRAVPEQTELFNHLARKLAAINFLGKQLDQELVKN 478 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ E L + + G VD + + ++++ + + + Sbjct: 479 EQNNLYWDIELPLAIVLAKMEISGIKVDRNRLNQMQSEFTERLSEIETNIYNEAG-EEFN 537 Query: 233 SRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + T+ +T VL + +P + N R S+ Sbjct: 538 LNSPKQLGVVLFEKLKLPIIKKTKTGYSTAVDVLEKLQGESPIIDNILNYR-TLSKIKST 596 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 ++ L++ +++ T ++TGR S QN+P + Sbjct: 597 YVDGLLKVIHTTDEKVHTTYVQTLTQTGRLSSIDPNLQNIPVRIEEGRK----------- 645 Query: 350 ITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 +R + EG ++ +D + IE RVLA + G+Q +AF+ GED+ Sbjct: 646 --------------IRQAFVPAREGWHILSSDYSQIELRVLAHITGDQNLQEAFKNGEDI 691 Query: 409 YVTTYARSFN-VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + TT + F ++VT + R K + + Y + + ++ Sbjct: 692 HATTAVKIFGLKDASEVTPNIRRQAKAVNFGIVYGIS-----DYGLSQNIGISRKDAKKF 746 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + +E+ + + + E + Sbjct: 747 IETYFKEFPGVKKYIDESVQLAKEQGYVETI----------------------------- 777 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 A +RR +P + R+ +NT Sbjct: 778 ------------AHRRRYLPDINSSSFNLRSF---------------AERTAMNT----- 805 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDE 641 +Q + DI+ M++ ++L VHDE++ E PD + Sbjct: 806 -------------PIQGSAADIIKIAMIDMENELEKRNLKSRMLLQVHDELIFEVPDEEM 852 Query: 642 FNASMLY-HLMTSNPSWAKGLPLKA 665 L +M S +PLK Sbjct: 853 TLMKELVPKVMDSAVK--LDVPLKV 875 >gi|299138180|ref|ZP_07031360.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8] gi|298600110|gb|EFI56268.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8] Length = 1022 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 94/701 (13%), Positives = 191/701 (27%), Gaps = 176/701 (25%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-H 91 ++EAL + + H+ VL+A DI + Sbjct: 436 LGLAVTAGHAIEISLDTPG-----IREALADPALPKQVHDLK---AVLRALQPHDITLAG 487 Query: 92 RWICTLVLARSNGLPSALKAV--------GEALKLSSQKMEEG--KELIARFCKGETHEC 141 ++ + + + AL K K L Sbjct: 488 PITDVMLQSYLLNPTHSSHTLIDLAARTTSRALTHQPTKDNPNDPKRLPEAAAAIARLAV 547 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVT--------------------------REIFKRL 175 + + +T + Sbjct: 548 TLGEQLAEVPTTHVIPKDDPALGGAITTEMLFADKAQVEGARAQGAASASSGPLALNPEA 607 Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 PL+ + L + + G VD L ++ + V L + + + Sbjct: 608 SPLNEHSTLAEVYEQLDLPLVSVLLQMEQTGVRVDSNLLREMSSRLAVTIDDLAERIYAS 667 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDL---TE--TTCQRVLSSNKKLTPQAIQVFNNR 280 + + ++L LF + L + +T Q +L + + Sbjct: 668 SGHR-FNINSPKQLGDVLFNKMDLPKPMKHGKGKVISTAQDILEDLA-QHHEVPAIVLEY 725 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + + L+ L + +GR+ T +G + TGR S QN+P + E Sbjct: 726 RQLQKLKSTYLDQLPSLTDVNGRIHTTFNQVG-TATGRLSSINPNLQNIPIRTAVGRE-- 782 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R+ IA+ G L+ AD + IE R++A + + L Sbjct: 783 -----------------------IRAAFIAAPGNLLMSADYSQIELRLMAHFSQDPLLLD 819 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 A+ TG+D++ T A F V A + K+ RA K + + Y G++ Sbjct: 820 AYRTGKDIHTLTAAEVFEVDAATMDKETRARAKAVNFGIVY--------------GISPF 865 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A + + + + + ++ V+ Sbjct: 866 GLAAQLGIDQ------------------------------KVAKAYIERYFDRYKGVATF 895 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + + + + GR D+ + Sbjct: 896 IEQTLETVRR--------------------------DQAVKTAFGRVRPIPDIQSRNP-- 927 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 R +Q + D++ M+ A + L VHDE++ Sbjct: 928 -NQRGFAERTA------VNTPLQGTAADLIKIAMLRIDAAIRTRNLRSLMTLQVHDELLF 980 Query: 635 E-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 + P+ + ++ M S + +P+ AE +R Sbjct: 981 DVVPEEADEMQELVKTEMESAAEF--SVPIVAEVGLGDNWR 1019 >gi|225873354|ref|YP_002754813.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196] gi|225793909|gb|ACO33999.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196] Length = 924 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 85/657 (12%), Positives = 189/657 (28%), Gaps = 155/657 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-H 91 + + L+ LE+ + H+ + L+A DI + Sbjct: 405 LGVAVEAGTALVLPLST-------LRPLLEDATIPKRVHDLK---STLRALSTQDIALRG 454 Query: 92 RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 ++ + + + + + + P Sbjct: 455 AVDDVMLYSYLLNPTHTTHRLSD---------------VTARFRNHALRETGENELPEAA 499 Query: 152 EAWRLFGEYCKGDVTV--TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 A + +V T +++ + L + + G +D + L Sbjct: 500 HAIFTLAPTLREEVEREDTLKVY------EQIDLPLAPVLLAMEQHGVRIDSEMLRALGD 553 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE---DLTE--TTCQRVLS 264 + + ++ Q++ + ++L LF + L + +T Q VL Sbjct: 554 RLAADMHRVSQQIYEQAGHR-FNINSPKQLGDVLFNKMNLPRPLKYGKGKVISTAQDVLE 612 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 ++ + ++ +++L +S GR+ T +G + TGR S Sbjct: 613 ELAA-HNDVPRLVLEFRQLAKLKSNYVDSLPLLADSQGRVHTTFHQVG-TATGRLSSTNP 670 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P + E +R+ IA+ G+KL+ AD + I Sbjct: 671 NLQNIPVRTALGRE-------------------------IRAAFIAAPGRKLLSADYSQI 705 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A + + L A+ TG+D++ T + F VAP + K+ R K + + Sbjct: 706 ELRLMAHFSEDPLLLNAYSTGQDIHTLTASEVFGVAPEAMDKETRNRAKAVNFGIV---- 761 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 G++ A + + Sbjct: 762 ----------YGISPFGLAQQLGIDQ------------------------------HEAR 781 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + + ++ V + + + + + Sbjct: 782 QYIDTYFARYQGVRAYIDRVLEQTRR--------------------------EQRVRTLF 815 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD- 623 GR D+ + + R +Q + D++ M+ Sbjct: 816 GRVRPIPDIQSRNA---NQRGFAERTA------VNTPLQGTAADLIKLAMIRIDARIKKK 866 Query: 624 -----IVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 + L VHDE++ + P+ + L M +P+ A+ + +R Sbjct: 867 NLQTLMTLQVHDELLFDVPEAEVEVVEDLVRHEMEHVVE--LKVPIVADIGIGENWR 921 >gi|57238779|ref|YP_179915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden] gi|58578703|ref|YP_196915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden] gi|57160858|emb|CAH57760.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden] gi|58417329|emb|CAI26533.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Welgevonden] Length = 865 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 88/664 (13%), Positives = 187/664 (28%), Gaps = 143/664 (21%) Query: 18 KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER 77 + D + + + + + + H ++K + V ++ Sbjct: 333 TIALYIDITDNTINSMSLSYKEGTILYINKEHITHALDLIKPLFSLDHILKV----MYDV 388 Query: 78 TVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGE 137 L D I + L+++ S + + + K + E I Sbjct: 389 KTLFKIIQEDTNITAFDDILIMSYSLDAGLHDHTLKNIIIRNIDKHDITNENITASTLLS 448 Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197 H L T ++ E+ L + + G Sbjct: 449 LHTALRRNLF--------------------TNQLCTIYY---RIEKPLINVLHNMEKIGI 485 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL--- 254 +D ++ L+ + + L++++ L+ + +L T LF + G+ Sbjct: 486 MIDGSILDKLSSTFSDKISVLEEKIYKLSG-EEFNIASSRQLSTILFDKMGIKKGKKLSS 544 Query: 255 -TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 T +T VL + ++ + L + ++++ T + + Sbjct: 545 GTYSTDAEVLHELAFNGVEIADEILKWRHFTKLKNTYTDVLAKQIDNNTSRVHTFYSMTS 604 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGR S QN+P S +R+ IA G Sbjct: 605 TVTGRLSSSNPNLQNIPIRSEEGNA-------------------------IRNAFIAKSG 639 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 KL+ AD + IE R++A +A Q AF +D+++ T + FN + K R K Sbjct: 640 YKLISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQIFNT--QNIDKKLRRKAK 697 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + G++ A Sbjct: 698 SINF--------------GIIYGISPFGLAKQ---------------------------- 715 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + + + + + + + ++ Sbjct: 716 --LGITRSEASKHIENYFKSYPEIKSYIEDIKVYART----------------------- 750 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + GR +D+ +N L + R Q S DI+ Sbjct: 751 ---HGYTRTVFGRKCFIKDINSNNHALRNFS---ERAAVNAPL------QGTSADIIKMS 798 Query: 614 MMNA-TKAGY-DIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYES 670 M++ + ++L VHDE++ E P+ ++ +M +PLK + Sbjct: 799 MIHLFDRLKTGYMILQVHDELLFEVPEDHVDNTVKLIKEVMEGIVK--LSVPLKVDITIG 856 Query: 671 KRYR 674 + Sbjct: 857 DNWG 860 >gi|300781297|ref|ZP_07091151.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC 33030] gi|300533004|gb|EFK54065.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC 33030] Length = 887 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 92/637 (14%), Positives = 192/637 (30%), Gaps = 146/637 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 L+ LE+ H++ +L + + T + A +G+ Sbjct: 372 LQTWLESAA-PKYLHSAKETFHML-RGRGITLRGIA-HDTAIAAYLLRPGQRTYDLGDVY 428 Query: 117 -KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT--REIFK 173 + +++ G + ++ + + A E D+ E++ Sbjct: 429 QRHLQRQLTTGSDQLSLLDEDT--------TLVDSAAAILELAEKLTEDLRAINSYELYA 480 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 E L + + D G VD+ + + + + T + SL + Sbjct: 481 ------DLELPLVTILAEMEDTGIAVDMDVLEEQLKEIAQKVTDAEDTARSLVDEPDLNL 534 Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK--KLTPQAIQVFNNRMRASRSAV 288 ++L LF + L T+ +T + + + P Q+ +R + Sbjct: 535 SSPKQLSVVLFDKLELPKTKKTKTGYSTAAKEIETLAAKNPHPFLDQLLAHR-EWQKLKS 593 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + L++ ++ DGR+ T A TGR S QN+P + + Sbjct: 594 T-IEGLIKTVHDDGRIHTTFNQTVA-STGRLSSTEPNLQNIPVRTEAGRR---------- 641 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +RS +G + L+ AD + IE RV+A ++ + ++A++ GED Sbjct: 642 ---------------IRSAFTVGDGYECLLTADYSQIEMRVMAHLSEDPGLIEAYKEGED 686 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 L+ +R F+V VT + R K M L GL+ Sbjct: 687 LHNFVGSRVFDVPIDDVTPELRRRVKAMSYGLV--------------YGLS--------- 723 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + +++ +++ Q+ V +E+ + Sbjct: 724 ---------------------AYGLSNQLGIPAGEAKKIMESYFQRFGGVKRYLDEVVEQ 762 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + + GR ++ ++ Sbjct: 763 ARR--------------------------DGYTSTVFGRRRYLPELTSDN---RVARENA 793 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA----------GYDIVLTVHDEIVCETP 637 R +Q + DI+ M+ A ++L VHDE+V E Sbjct: 794 ERAALNAP------IQGTAADIIKVAMIRVDAALNDASRDQPFQSRVLLQVHDELVVEIA 847 Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + +PL+ + Sbjct: 848 PGELEQVQAIVEEEMDRAIT--LRVPLEVSAGTGTNW 882 >gi|219668497|ref|YP_002458932.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2] gi|219538757|gb|ACL20496.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2] Length = 873 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 105/658 (15%), Positives = 194/658 (29%), Gaps = 149/658 (22%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI-VAHNSYFERTVL-KACFN 85 + + L P + + LE+++V VA + VL N Sbjct: 344 ARITAWGIAVGGESFILNWTDAAPEVRLAFSQLLEDSEVPKQVA-----DSKVLYSLLLN 398 Query: 86 LDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +I + + + A + +E KE I + Sbjct: 399 EEIILRGVSLDIGLAAYLINPTRN----------KFEPLELVKEYI-------PGAGEFA 441 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 ++ Y + T E L E+ L + + +G VDV Sbjct: 442 NLAEEASALAQVADSYKE-----TLEELGLSALLHEMEEPLSPILAEMEKQGIAVDVQRL 496 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + VE +L+QE+ + + ++L LF + GL T+ +T Sbjct: 497 QEFGRELTVELQRLEQEIYADAG-ETFNINSPQQLGHILFEKLGLPPMKKTKTGYSTDAD 555 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 L + +V + R S+ +N L+ ++ +GR+ T Q + TGR S Sbjct: 556 TLEELRDQHSIVERVLDYRQ-LSKLMSTYVNGLLAQIH-EGRVHTTFQQ-TVTATGRLSS 612 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P +R EG L+ AD Sbjct: 613 TEPNLQNIPIRLELGR-------------------------LLRKVFTPTQEGWVLLSAD 647 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA + ++ ++F +D++ T + F + A+VTKD R K + Sbjct: 648 YSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAEVTKDMRRKAKAVNF--- 704 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 GL + Sbjct: 705 -----------GLIYGLTDFGL------------------------------GRDLGVPR 723 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + + ++ V L + + E G+ Sbjct: 724 KEAKTYIETYFHRYEGVKRY---LEEIVVKAKEEGQVRTLLN------------------ 762 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R ++ + R +Q + DI+ M+ +A Sbjct: 763 -----RLRRIPELRHPNRVQRQF---GERIAMNTP------IQGTAADIMKLAMLGVAEA 808 Query: 621 ----GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++L VHDE+V E P+ E A ++ M S +PL A+ + Sbjct: 809 LKPYRANLLLQVHDELVIEVAPEDLEEVAKVVREEMESAFP--LSVPLIADCKTGPNW 864 >gi|168181699|ref|ZP_02616363.1| DNA-directed DNA polymerase [Clostridium botulinum Bf] gi|237796465|ref|YP_002864017.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657] gi|182675010|gb|EDT86971.1| DNA-directed DNA polymerase [Clostridium botulinum Bf] gi|229261470|gb|ACQ52503.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657] Length = 875 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 99/680 (14%), Positives = 203/680 (29%), Gaps = 153/680 (22%) Query: 17 TKCGICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENT 64 + + Y E ++LF+ + V D +V KE E+ Sbjct: 322 KENDLYLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLKNTKEQFIEVCKEIFESK 381 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 ++ + +++ RT+L+ ++ + + A V + ++SS E Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIK-FDINLAAYLIDP------VRKEYEISSLASE 433 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 + I R + + + E + + ++ EQ Sbjct: 434 YLFKNINREDEILKIKEVNM------MPKLYKVLEEKIKEQDMEELLY-------KVEQP 480 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + G+ VD + L + E E+ S++ + ++L LF Sbjct: 481 LTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE-EEFNINSPKQLGKILF 539 Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + L + T+ +T VL + P ++ R ++ + L A++ D Sbjct: 540 EKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQ-LTKIYSTYIEGLKAAIDED 598 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 G++ + TGR S QN+P E Sbjct: 599 GKIHSNFNQ-TVTATGRLSSTEPNLQNIPIKYEMGRE----------------------- 634 Query: 362 DCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R I + G ++ AD + IE RVLA ++ ++ + AF +D++ T + F V Sbjct: 635 --IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVP 692 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 +VT R K + + Y G+ + + Sbjct: 693 IEEVTPLMRGNAKAVNFGIVY--------------GIGDFSLSQ---------------- 722 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + ++ A+ +++ V L E+ +E G Sbjct: 723 --------------DLNITRKEAKQYIDAYLERYPNVKLY---LENIVEEAVEKGYVNTI 765 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 R ++V ++ + R Sbjct: 766 LN-----------------------RRRYIKEVKSSNKIVKAA---GERLAMNSP----- 794 Query: 601 IVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTS 653 +Q + DI+ M+N + I+L VHDE++ + ++ M Sbjct: 795 -IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALVKKEMEQ 853 Query: 654 NPSWAKGLPLKAEGYESKRY 673 G L + + Sbjct: 854 VLELKVG--LDVDINIGNNW 871 >gi|89894086|ref|YP_517573.1| hypothetical protein DSY1340 [Desulfitobacterium hafniense Y51] gi|89333534|dbj|BAE83129.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 873 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 105/658 (15%), Positives = 194/658 (29%), Gaps = 149/658 (22%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI-VAHNSYFERTVL-KACFN 85 + + L P + + LE+++V VA + VL N Sbjct: 344 ARITAWGIAVGGESFILNWTDAAPEVRLAFSQLLEDSEVPKQVA-----DSKVLYSLLLN 398 Query: 86 LDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +I + + + A + +E KE I + Sbjct: 399 EEIILRGVSLDIGLAAYLINPTRN----------KFEPLELVKEYI-------PGAGEFA 441 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 ++ Y + T E L E+ L + + +G VDV Sbjct: 442 NLAEEASALAQVADSYKE-----TLEELGLSALLHEMEEPLSPILAEMEKQGIAVDVQRL 496 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + VE +L+QE+ + + ++L LF + GL T+ +T Sbjct: 497 QEFGRELTVELQRLEQEIYADAG-ETFNINSPQQLGHILFEKLGLPPMKKTKTGYSTDAD 555 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 L + +V + R S+ +N L+ ++ +GR+ T Q + TGR S Sbjct: 556 TLEELRDQHSIVERVLDYRQ-LSKLMSTYVNGLLAQIH-EGRVHTTFQQ-TVTATGRLSS 612 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P +R EG L+ AD Sbjct: 613 TEPNLQNIPIRLELGR-------------------------LLRKVFTPTQEGWVLLSAD 647 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA + ++ ++F +D++ T + F + A+VTKD R K + Sbjct: 648 YSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAEVTKDMRRKAKAVNF--- 704 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 GL + Sbjct: 705 -----------GLIYGLTDFGL------------------------------GRDLGVPR 723 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + + ++ V L + + E G+ Sbjct: 724 KEAKTYIETYFHRYEGVKRY---LEEIVVKAKEEGQVRTLLN------------------ 762 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R ++ + R +Q + DI+ M+ +A Sbjct: 763 -----RLRRIPELRHPNRVQRQF---GERIAMNTP------IQGTAADIMKLAMLGVAEA 808 Query: 621 ----GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++L VHDE+V E P+ E A ++ M S +PL A+ + Sbjct: 809 LKPYRANLLLQVHDELVIEVAPEDLEEVAKVVREEMESAFP--LSVPLIADCKTGPNW 864 >gi|58616765|ref|YP_195964.1| DNA polymerase I [Ehrlichia ruminantium str. Gardel] gi|58416377|emb|CAI27490.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Gardel] Length = 860 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 87/660 (13%), Positives = 186/660 (28%), Gaps = 143/660 (21%) Query: 21 ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL 80 + D + + + + + + H ++K + V ++ L Sbjct: 331 LYIDITDNTINSMSLSYKEGTILYINKEHIIHALDLIKPLFSLDHILKV----MYDVKTL 386 Query: 81 KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 D I + L+++ S + + K + E Sbjct: 387 FKIIQEDTNITAFDDILIMSYSLDVGLHDHTL---------KNIIIRNTDKHDITNENIT 437 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 + + LF I+ R+E + + G +D Sbjct: 438 ASTLLSL-HTALRRNLFTNQLCT-------IYYRIEKPL------INVLHNMEKIGIMID 483 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TE 256 ++ L+ + + L++++ L+ + +L T LF + G+ T Sbjct: 484 GSILDKLSSTFSDKISVLEEKIYKLSG-EEFNIASSRQLSTILFDKMGIKKGKKLSSGTY 542 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL + ++ + L + ++++ T + ++ T Sbjct: 543 STDAEVLHELAFNGVEIADEILKWRHFTKLKNTYTDVLAKQIDNNTSRVHTFYSMTSTVT 602 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P S +R+ IA G KL Sbjct: 603 GRLSSSNPNLQNIPIRSEEGNA-------------------------IRNAFIAKSGYKL 637 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R++A +A Q AF +D+++ T + FN + K R K + Sbjct: 638 ISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQIFNT--QNIDKKLRRKAKSIN 695 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ A Sbjct: 696 F--------------GIIYGISPFGLAKQ------------------------------L 711 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + + + + + + ++ Sbjct: 712 GITRSEASKHIENYFKSYPEIKSYIEDIKVYART-------------------------- 745 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 + GR +D+ +N L + R Q S DI+ M++ Sbjct: 746 HGYTRTVFGRKCFIKDINSNNHALRNFS---ERAAVNAPL------QGTSADIIKMSMIH 796 Query: 617 A-TKAGY-DIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + ++L VHDE++ E P+ ++ +M +PLK + + Sbjct: 797 LFDRLKTGYMILQVHDELLFEVPEDHVDNTVKLIKEVMEGIVK--LSVPLKVDITIGDNW 854 >gi|170754800|ref|YP_001782645.1| DNA polymerase I [Clostridium botulinum B1 str. Okra] gi|169120012|gb|ACA43848.1| DNA polymerase I [Clostridium botulinum B1 str. Okra] Length = 875 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 100/680 (14%), Positives = 203/680 (29%), Gaps = 153/680 (22%) Query: 17 TKCGICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENT 64 + + Y E ++LF+ + V D +V KE E Sbjct: 322 KENDLYLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCKEMFEGK 381 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 ++ + +++ RT+L+ ++ + + A V + ++SS E Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIK-FDINLAAYLIDP------VRKEYEISSLASE 433 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 + I R + + + E + + ++ EQ Sbjct: 434 YLFKNINREDEFLKIKEVNI------MPNLYKVLEEKIKEQDMEELLY-------KVEQP 480 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + G+ VD + L + E E+ S++ + ++L LF Sbjct: 481 LTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE-EEFNINSPKQLGKILF 539 Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + L + T+ +T VL + P ++ R ++ + L A++ D Sbjct: 540 EKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQ-LTKIYSTYIEGLKAAIDED 598 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 G++ + TGR S QN+P E Sbjct: 599 GKIHSNFNQ-TVTATGRLSSTEPNLQNIPIKYEMGRE----------------------- 634 Query: 362 DCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R I + G ++ AD + IE RVLA ++ ++ + AF +D++ T + F V Sbjct: 635 --IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVP 692 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 +VT R+ K + + Y G+ + + Sbjct: 693 IEEVTPLMRSNAKAVNFGIVY--------------GIGDFSLSQ---------------- 722 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + ++ A+ +++ V L E+ +E G Sbjct: 723 --------------DLNITRKEAKQYIDAYLERYPNVKLY---LENIVEEAVEKGYVSTI 765 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 R ++V ++ + R Sbjct: 766 LN-----------------------RRRYIKEVKSSNKIVKAA---GERLAMNSP----- 794 Query: 601 IVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTS 653 +Q + DI+ M+N K I+L VHDE++ + ++ M Sbjct: 795 -IQGSAADIIKLAMVNVHKKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKKEMEQ 853 Query: 654 NPSWAKGLPLKAEGYESKRY 673 G L + + Sbjct: 854 VLELKVG--LDVDINIGNNW 871 >gi|228929634|ref|ZP_04092652.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228830021|gb|EEM75640.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 891 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALNSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K KM+E + + Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|300767153|ref|ZP_07077065.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494972|gb|EFK30128.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 887 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 95/664 (14%), Positives = 198/664 (29%), Gaps = 147/664 (22%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI-VAHNSYFERT---VLKACFNLDIP 89 F + +M + + L +T +T V F+ V + + Sbjct: 343 GFAIGADDHWYISRDVELLMQPTVADLLSSTTITKDV-----FDMKRTTVGLNRLGIQL- 396 Query: 90 IHRWICTLVLARSNGLPSA---LKAVGEALK---LSSQKMEEGKELIARFCKGETHECL- 142 L+++ L ++ E L S + GK + + + Sbjct: 397 GKVDFDLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGKGVKRAIPEDDDVFFSH 456 Query: 143 -YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 + +L E + +++ E+ + + + G VD Sbjct: 457 LARKLAAIASLKPQLLKELAANEQD---QLYD------DIEKPMANVLAQMEIAGITVDS 507 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 + + ++++Q + + ++L LF E L + T+ +T Sbjct: 508 SRLKAMGSQFTERLSEIEQTIYQEAG-EEFNINSPKQLGHILFEEMKLPVIKKTKTGYST 566 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL P + R S+ + L++A++S + T ++TGR Sbjct: 567 AVDVLEKLAPEAPIVANILQYRQ-ISKIQSTYVIGLLDAIHSADQKVHTRYLQTLTQTGR 625 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377 S QN+P + +R + S EG ++ Sbjct: 626 LSSVDPNLQNIPVRLEEGRK-------------------------IRQAFVPSHEGWQIF 660 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVME 436 +D + IE RVLA + ++ AF+ G+D++ T R F++ +VT + R K + Sbjct: 661 SSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVTPNIRRQAKAVN 720 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y + + + ++ +E+ + + + + + + Sbjct: 721 FGIVYGIS-----DYGLSQNIGITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVE 775 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 +RR +P + K Sbjct: 776 TIS-----------------------------------------HRRRYLPDINSKSFNQ 794 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R+ +NT +Q + DI+ M+ Sbjct: 795 RSF---------------AERTAMNT------------------PIQGSAADIIKIAMIK 821 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 ++L VHDE++ E P + L +M S A +PLK E + Sbjct: 822 MQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVLEKLVPSVMDSAVQLA--VPLKVESHY 879 Query: 670 SKRY 673 + Sbjct: 880 GDTW 883 >gi|167758306|ref|ZP_02430433.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704] gi|167664203|gb|EDS08333.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704] Length = 871 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 84/667 (12%), Positives = 178/667 (26%), Gaps = 153/667 (22%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE----NTDVTIVAHNSYFERTV 79 +A + F V + L E LE + + F+ Sbjct: 337 FAGQAGIDGIGLCFSKKDVYCIRAGQG-IELSWLLEQLEGVAKDAGRF-----AMFDIKE 390 Query: 80 LKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG 136 + V A + V + + + A + Sbjct: 391 ALEHIRIA-RQDNCFDVTVAAYLLNPLKSNYTYEDVAREQLNLIIEDKLDAWMKACYEAY 449 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + W+ E C D +F E L + + G Sbjct: 450 TAYAASG--------ILWKRLKE-CLMD-----RLFM------DVEMPLVFTLYDMEVNG 489 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 V+ + + +L++++ + ++L LF + T+ Sbjct: 490 VRVEAEALKYYGDQLGAKIVELEKDIYEEAG-ENFNINSPKQLGVVLFENMKIPGGKKTK 548 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL P ++ R ++ + L + DGR+ Sbjct: 549 TGYSTAADVLEKLAPDYPIIAKILEYRQY-TKLKSTYADGLANYIREDGRIHSKFNQ-TI 606 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGR S QN+P +R I +G Sbjct: 607 TATGRLSSTEPNLQNIPIRVELGR-------------------------LIRKVFIPEDG 641 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 V AD + IE RVLA +G+ ++A++ +D++ T ++ F++ +VT QR K Sbjct: 642 FVFVDADYSQIELRVLAHCSGDSHLIEAYKEKKDIHRITASQVFHIPFDEVTDQQRRNAK 701 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + G++ + + Sbjct: 702 AVNF--------------GIVYGISSFGLSQDLSI------------------------- 722 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + + + + + ++ + ++ Sbjct: 723 -----TRKEASKYIEDYFTAYPGIKIFLDDTVKHAKE----------------------- 754 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 ++ GR ++ ++ + R +Q + DI+ Sbjct: 755 ---MGYVVTLFGRRRPVPELSSSNYMQRSF---GERVAMNAP------IQGTAADIIKIA 802 Query: 614 M------MNATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666 M + K +VL VHDE++ E + + M S +PL+ + Sbjct: 803 MTGVGRRLKEQKMKSRLVLQVHDELLVEAYKPELDQVKKILKEEMEQAAS--LDVPLEID 860 Query: 667 GYESKRY 673 + + + Sbjct: 861 MHTGENW 867 >gi|306821558|ref|ZP_07455156.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550303|gb|EFM38296.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 883 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 92/643 (14%), Positives = 189/643 (29%), Gaps = 147/643 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + +K LE+ ++ + ++ E L ++ + ++ + + + E Sbjct: 360 EKIKHILEDENIEKIGYDIKAEYLSLLPY-DISLRGIKY-DLKIAKYLLSPDNNSYDISE 417 Query: 115 ---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE-----Y-----C 161 LS + E F KG+ + + K E + + Y Sbjct: 418 IAMEYGLSHLQSHE-----EFFGKGKKEKVINPFTKKEVEEYYMKVLDIVDSSYDIVMTA 472 Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 D +T + E L + + G +D +L+ E Sbjct: 473 IRDSEMT-------KLFEDVEIPLITVLSDMEYIGVAIDKKELENQKIEFAQHILRLESE 525 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278 + L + ++L LF + L T+ +T VL + ++ + Sbjct: 526 IYELAG-EEFNINSPKQLGVILFEKLNLPPVKKTKTGYSTDAAVLEELSDMHDIIGKIIS 584 Query: 279 NRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R ++ + L+ +N + R+ + A+ TGR S QN+P Sbjct: 585 YRQY-TKLQSTYVEGLLNIINPNTERIHSSFNQTIAA-TGRISSTEPNLQNIPVRLEIGR 642 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R IA +G LV +D + IE RVLA ++ E+ Sbjct: 643 -------------------------NLRKAFIARQGCVLVDSDYSQIELRVLAHISDEEA 677 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF D++ T + F V ++VTK+QR K + + Y + L Sbjct: 678 LIQAFSKDADIHTQTASEVFGVDISEVTKEQRGAAKAVNFGIVYG-----ISDFGLSNNL 732 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + K + ++ + Sbjct: 733 G---------------------------------------ITKKKAGQYIKTYLDRYKNI 753 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + ++ E+G GR + Sbjct: 754 EKYMQDV---VAFGEEHGYVTTIL-----------------------GRRRSIPQLKQKN 787 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631 + ++L +Q + DI+ M+ ++L VHDE Sbjct: 788 IMIKNLGKRL---------AMNTPIQGSAADIIKIAMVRVSNRLKRENLKSKLILQVHDE 838 Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ E ++ +L M+ + + LK + + Sbjct: 839 LIIEATADEQDYIKALLQEEMSKA--YDMKVELKVDINVGNSW 879 >gi|308180373|ref|YP_003924501.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045864|gb|ADN98407.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ST-III] Length = 882 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 95/664 (14%), Positives = 198/664 (29%), Gaps = 147/664 (22%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI-VAHNSYFERT---VLKACFNLDIP 89 F + +M + + L +T +T V F+ V + + Sbjct: 338 GFAIGADDHWYISRDVELLMQPTVADLLSSTTITKDV-----FDMKRTTVGLNRLGIQL- 391 Query: 90 IHRWICTLVLARSNGLPSA---LKAVGEALK---LSSQKMEEGKELIARFCKGETHECL- 142 L+++ L ++ E L S + GK + + + Sbjct: 392 GKVDFDLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGKGVKRAIPEDDDVFFSH 451 Query: 143 -YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 + +L E + +++ E+ + + + G VD Sbjct: 452 LARKLAAIASLKPQLLKELAANEQD---QLYD------DIEKPMANVLAQMEIAGITVDS 502 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 + + ++++Q + + ++L LF E L + T+ +T Sbjct: 503 SRLKAMGSQFTERLSEIEQTIYQEAG-EEFNINSPKQLGHILFEEMKLPVIKKTKTGYST 561 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL P + R S+ + L++A++S + T ++TGR Sbjct: 562 AVDVLEKLAPEAPIVANILQYRQ-ISKIQSTYVIGLLDAIHSADQKVHTRYLQTLTQTGR 620 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377 S QN+P + +R + S EG ++ Sbjct: 621 LSSVDPNLQNIPVRLEEGRK-------------------------IRQAFVPSHEGWQIF 655 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVME 436 +D + IE RVLA + ++ AF+ G+D++ T R F++ +VT + R K + Sbjct: 656 SSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVTPNIRRQAKAVN 715 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y + + + ++ +E+ + + + + + + Sbjct: 716 FGIVYGIS-----DYGLSQNIGITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVE 770 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 +RR +P + K Sbjct: 771 TIS-----------------------------------------HRRRYLPDINSKSFNQ 789 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R+ +NT +Q + DI+ M+ Sbjct: 790 RSF---------------AERTAMNT------------------PIQGSAADIIKIAMIK 816 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 ++L VHDE++ E P + L +M S A +PLK E + Sbjct: 817 MQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVLEKLVPSVMDSAVQLA--VPLKVESHY 874 Query: 670 SKRY 673 + Sbjct: 875 GDTW 878 >gi|28378222|ref|NP_785114.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1] gi|254556429|ref|YP_003062846.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1] gi|28271057|emb|CAD63962.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1] gi|254045356|gb|ACT62149.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1] Length = 882 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 95/664 (14%), Positives = 198/664 (29%), Gaps = 147/664 (22%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI-VAHNSYFERT---VLKACFNLDIP 89 F + +M + + L +T +T V F+ V + + Sbjct: 338 GFAIGADDHWYISRDVELLMQPTVADLLSSTTITKDV-----FDMKRTTVGLNRLGIQL- 391 Query: 90 IHRWICTLVLARSNGLPSA---LKAVGEALK---LSSQKMEEGKELIARFCKGETHECL- 142 L+++ L ++ E L S + GK + + + Sbjct: 392 GKVDFDLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGKGVKRAIPEDDDVFFSH 451 Query: 143 -YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 + +L E + +++ E+ + + + G VD Sbjct: 452 LARKLAAIASLKPQLLKELAANEQD---QLYD------DIEKPMANVLAQMEIAGITVDS 502 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 + + ++++Q + + ++L LF E L + T+ +T Sbjct: 503 SRLKAMGSQFTERLSEIEQTIYQEAG-EEFNINSPKQLGHILFEEMKLPVIKKTKTGYST 561 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL P + R S+ + L++A++S + T ++TGR Sbjct: 562 AVDVLEKLAPEAPIVANILQYRQ-ISKIQSTYVVGLLDAIHSADQKVHTRYLQTLTQTGR 620 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377 S QN+P + +R + S EG ++ Sbjct: 621 LSSVDPNLQNIPVRLEEGRK-------------------------IRQAFVPSHEGWQIF 655 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVME 436 +D + IE RVLA + ++ AF+ G+D++ T R F++ +VT + R K + Sbjct: 656 SSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVTPNIRRQAKAVN 715 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y + + + ++ +E+ + + + + + + Sbjct: 716 FGIVYGIS-----DYGLSQNIGITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVE 770 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 +RR +P + K Sbjct: 771 TIS-----------------------------------------HRRRYLPDINSKSFNQ 789 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R+ +NT +Q + DI+ M+ Sbjct: 790 RSF---------------AERTAMNT------------------PIQGSAADIIKIAMIK 816 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 ++L VHDE++ E P + L +M S A +PLK E + Sbjct: 817 MQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVLEKLVPSVMDSAVQLA--VPLKVESHY 874 Query: 670 SKRY 673 + Sbjct: 875 GDTW 878 >gi|311740514|ref|ZP_07714341.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium ATCC 33035] gi|311304034|gb|EFQ80110.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium ATCC 33035] Length = 882 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 101/658 (15%), Positives = 193/658 (29%), Gaps = 146/658 (22%) Query: 34 AFGFDDHP-----VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 A F D VEL D + + L + L + H + +L I Sbjct: 348 AIAFVDQERHGLQVELGDLSAEDD--KALAQWLASDA-PKYFHEAKAAFHMLA---GRGI 401 Query: 89 PIHRW-ICTLVLARSNGLPSALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRN 146 + T + A A+ + + + + E ++ Sbjct: 402 ELAGIAHDTALAAYLLRPGQRTYALADVYQRHLQKTLGAATEQLSLLD------------ 449 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 + ++ + E + E L + + G VDV + T Sbjct: 450 -DSSLVDQAAAILELAERLSAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDILET 508 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263 + + ++ L + ++L+T LF L T+ +T + + Sbjct: 509 QKDAFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAKEI 568 Query: 264 SSNK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 P + +R + L L++ + DGR+ T A TGR S Sbjct: 569 EQLAAKNPHPFLDHLLAHR-EYQKMKTT-LEGLIKTVQPDGRIHTTFNQTVA-STGRLSS 625 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVAD 380 QN+P + + +RS I +G +L+ AD Sbjct: 626 TEPNLQNIPVRTEAGR-------------------------QIRSVFIVGDGFDELMTAD 660 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RV+A ++ + ++A++ GEDL+ +R F+V QVT + R K M L Sbjct: 661 YSQIEMRVMAHLSADPGLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLV 720 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 GL+ + Sbjct: 721 --------------YGLSAFGLSQQ------------------------------LGIPA 736 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + +++ ++ V + L + Q ++G Sbjct: 737 GEAKSIMESYFERFGGVKKY---LDEVVVQARKDGYTATL-------------------- 773 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 GR ++ ++ R +Q + DI+ M+ +A Sbjct: 774 ---FGRRRYLPELNSDN---RLARENAERAALNAP------IQGTAADIIKVAMIRVDRA 821 Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + + M S +PL+ K + Sbjct: 822 LQGMKSRVLLQVHDELVVEVAPGEADEVREILEREMDSAIE--LNVPLEVSAGAGKDW 877 >gi|331028082|ref|YP_004421796.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1] gi|301341545|gb|ADK73429.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1] Length = 838 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 195/805 (24%), Positives = 305/805 (37%), Gaps = 140/805 (17%) Query: 5 FIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDH-PVELWDCVHDP------VMPQ 55 IDFETRSP D+ K G Y+ D + A+ V+LW H P Sbjct: 40 TIDFETRSPTDIKKRGGFLYSLDPATEAMCLAYHLPGETEVKLWHMAHPEFFIGESPAPT 99 Query: 56 VLKEALENTDVTIVAHNSYFERTVLK-----ACFNLDIPIHRWICTLVLARSNGLPSALK 110 L + + AHN++FER + I +W C+ A + LP +L+ Sbjct: 100 DLFAFILAGG-LVEAHNAFFERCIWTNIMIPRYGWPVIKPDQWRCSAAKASAMSLPRSLE 158 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGET-----------HECLYDRNKPNH--------- 150 A+ L K EG++L+ + CK R Sbjct: 159 EAVAAMDLGIDKDMEGRKLMLKMCKPRKLRKAEMEKWMHDTGHKGRTPAYKSAGYPIVYH 218 Query: 151 --REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 E +YCK DV + L LS +E E W +DQ +N RG D+ +A Sbjct: 219 ETEEDLHRLWDYCKQDVFAEHALSLSLPELSEQELETWKMDQWLNWRGARFDLTMAKQAL 278 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268 + R +L+ LE+LT ++S+ +K WL E L L D T + L + ++ Sbjct: 279 SMASEWRKRLNSILEALTG--ITSATKRAAVKEWLVEEEDLDLPDTAADTLKHYLEN-EE 335 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLV-EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 L+ +A +V ++++ K N ++ +A D R R + + GA TGRW+G Sbjct: 336 LSARARRVLEIVRDVNKTSTRKYNAMIDKAWEGDERARDLMMYHGAG-TGRWAGKGIQVH 394 Query: 328 NLPRPSRSHEELDQIITHLPTSITS-----DPDPLQIISDCVRSCVIASEGKKLVVADLA 382 N P ++ D+ + D + +S +R ++A EG++L+VAD A Sbjct: 395 NFPARDLVVKDFDEAAELILDGDLDWCHALYGDVMAFLSHALRGAILAEEGRELMVADYA 454 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN------VAPAQVTKDQ------RA 430 IEAR + W A +Q L F G+D+Y + +A D R Sbjct: 455 AIEARCVLWEADDQQGLGVFRRGDDIYCDMATGIYGFEVQKKIAKDWTHPDYTLHSGCRQ 514 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL--------------------VKTNS 470 GK L LGY G F G+ + L + T Sbjct: 515 FGKQAILGLGYGMGYMTFLLTCRKYGITFSRAEVLRIMGPEKLDKTEEWVRKQLCLDTPP 574 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV---------KKAWRQKHSRVSELW 521 + E+A+ + ++ + V +R ++ +V +W Sbjct: 575 SKMTPEEAKRYSARKRQAARSRRRLIEAREDPAKIVHELALMKHTVDIYRARYPQVKAMW 634 Query: 522 NELHQAFEQT-----------------------------------IENGKAIIARKRRDV 546 ++ Q ++ + + Sbjct: 635 SDQEACAIQAVKSLPTPEELTQLHDNGIELPREVFTASDPVECGKVKWYMSEARTVVDAL 694 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY--------------LNTTTRQLTREYT 592 K L LPSGR + Y D + ++ TR+ R T Sbjct: 695 AGTIHVKQGKWLHCELPSGRRMSYCDPQIKLTKTSWGETKPALRYMSVDGVTRKWVRTAT 754 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG--YDIVLTVHDEIVCETPDTDEFNASMLYHL 650 YGGK+ ENI QAV+RDI+AE M+N+ K G YD +++VHDE+VCE + + + L Sbjct: 755 YGGKIVENITQAVARDIMAEAMLNSVKEGCPYDPIMSVHDELVCEVDED-KGDLEEFETL 813 Query: 651 MTSNPSWAKGLPLKAEGYESKRYRK 675 M+ P WA G P+ AE KRYRK Sbjct: 814 MSDLPIWAAGCPIVAEAERFKRYRK 838 >gi|228917225|ref|ZP_04080782.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842426|gb|EEM87517.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 891 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K KM+E + + Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|229112052|ref|ZP_04241595.1| DNA polymerase I [Bacillus cereus Rock1-15] gi|228671375|gb|EEL26676.1| DNA polymerase I [Bacillus cereus Rock1-15] Length = 891 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 95/656 (14%), Positives = 188/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K K ++ K + KG + Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELK 456 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V + ++ E + E L + + +G VD Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 575 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|228948311|ref|ZP_04110594.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811298|gb|EEM57636.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 891 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K KM+E + + Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|229129871|ref|ZP_04258837.1| DNA polymerase I [Bacillus cereus BDRD-Cer4] gi|229147147|ref|ZP_04275505.1| DNA polymerase I [Bacillus cereus BDRD-ST24] gi|228636257|gb|EEK92729.1| DNA polymerase I [Bacillus cereus BDRD-ST24] gi|228653562|gb|EEL09434.1| DNA polymerase I [Bacillus cereus BDRD-Cer4] Length = 891 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 95/656 (14%), Positives = 188/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K K ++ K + KG + Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELK 456 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V + ++ E + E L + + +G VD Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 575 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|229158189|ref|ZP_04286256.1| DNA polymerase I [Bacillus cereus ATCC 4342] gi|228625147|gb|EEK81907.1| DNA polymerase I [Bacillus cereus ATCC 4342] Length = 891 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 95/658 (14%), Positives = 182/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +DI L+ A K KM+E + + Sbjct: 400 IDIQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ + AF+ D++ T F V +VT + R K + Sbjct: 667 ADYSQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|47564997|ref|ZP_00236040.1| DNA polymerase I [Bacillus cereus G9241] gi|47557783|gb|EAL16108.1| DNA polymerase I [Bacillus cereus G9241] Length = 891 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 95/658 (14%), Positives = 182/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +DI L+ A K KM+E + + Sbjct: 400 IDIQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ + AF+ D++ T F V +VT + R K + Sbjct: 667 ADYSQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|228987834|ref|ZP_04147943.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771882|gb|EEM20339.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 891 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 95/658 (14%), Positives = 182/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +DI L+ A K KM+E + + Sbjct: 400 IDIQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ + AF+ D++ T F V +VT + R K + Sbjct: 667 ADYSQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|222098048|ref|YP_002532105.1| DNA polymerase i [Bacillus cereus Q1] gi|221242106|gb|ACM14816.1| DNA polymerase I [Bacillus cereus Q1] Length = 891 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 182/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDSALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K KM+E + + Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ + AF+ D++ T F V +VT + R K + Sbjct: 667 ADYSQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|296505059|ref|YP_003666759.1| DNA polymerase I [Bacillus thuringiensis BMB171] gi|296326111|gb|ADH09039.1| DNA polymerase I [Bacillus thuringiensis BMB171] Length = 877 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 95/656 (14%), Positives = 188/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 385 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K K ++ K + KG + Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELK 442 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V + ++ E + E L + + +G VD Sbjct: 443 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 561 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 619 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 620 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 654 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 655 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 715 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 767 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 768 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 787 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 788 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 819 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 820 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|49187477|ref|YP_030729.1| DNA polymerase I [Bacillus anthracis str. Sterne] gi|228935894|ref|ZP_04098704.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229124153|ref|ZP_04253345.1| DNA polymerase I [Bacillus cereus 95/8201] gi|49181404|gb|AAT56780.1| DNA polymerase I [Bacillus anthracis str. Sterne] gi|228659455|gb|EEL15103.1| DNA polymerase I [Bacillus cereus 95/8201] gi|228823662|gb|EEM69484.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 891 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K KM+E + + Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|30264657|ref|NP_847034.1| DNA polymerase I [Bacillus anthracis str. Ames] gi|47778333|ref|YP_021476.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor'] gi|65321954|ref|ZP_00394913.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bacillus anthracis str. A2012] gi|167633873|ref|ZP_02392196.1| DNA polymerase I [Bacillus anthracis str. A0442] gi|167638243|ref|ZP_02396521.1| DNA polymerase I [Bacillus anthracis str. A0193] gi|170685807|ref|ZP_02877030.1| DNA polymerase I [Bacillus anthracis str. A0465] gi|170705559|ref|ZP_02896023.1| DNA polymerase I [Bacillus anthracis str. A0389] gi|177651090|ref|ZP_02933921.1| DNA polymerase I [Bacillus anthracis str. A0174] gi|190569033|ref|ZP_03021933.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I] gi|196032762|ref|ZP_03100175.1| DNA polymerase I [Bacillus cereus W] gi|218905814|ref|YP_002453648.1| DNA polymerase I [Bacillus cereus AH820] gi|227817371|ref|YP_002817380.1| DNA polymerase I [Bacillus anthracis str. CDC 684] gi|229603367|ref|YP_002868866.1| DNA polymerase I [Bacillus anthracis str. A0248] gi|254687394|ref|ZP_05151250.1| DNA polymerase I [Bacillus anthracis str. CNEVA-9066] gi|254724957|ref|ZP_05186740.1| DNA polymerase I [Bacillus anthracis str. A1055] gi|254736694|ref|ZP_05194400.1| DNA polymerase I [Bacillus anthracis str. Western North America USA6153] gi|254741731|ref|ZP_05199418.1| DNA polymerase I [Bacillus anthracis str. Kruger B] gi|254757503|ref|ZP_05209530.1| DNA polymerase I [Bacillus anthracis str. Australia 94] gi|30259332|gb|AAP28520.1| DNA-directed DNA polymerase [Bacillus anthracis str. Ames] gi|47552038|gb|AAT33951.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor'] gi|167514060|gb|EDR89428.1| DNA polymerase I [Bacillus anthracis str. A0193] gi|167530674|gb|EDR93376.1| DNA polymerase I [Bacillus anthracis str. A0442] gi|170129684|gb|EDS98547.1| DNA polymerase I [Bacillus anthracis str. A0389] gi|170670271|gb|EDT21011.1| DNA polymerase I [Bacillus anthracis str. A0465] gi|172082916|gb|EDT67978.1| DNA polymerase I [Bacillus anthracis str. A0174] gi|190559815|gb|EDV13800.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I] gi|195994191|gb|EDX58146.1| DNA polymerase I [Bacillus cereus W] gi|218539736|gb|ACK92134.1| DNA polymerase I [Bacillus cereus AH820] gi|227005090|gb|ACP14833.1| DNA-directed DNA polymerase [Bacillus anthracis str. CDC 684] gi|229267775|gb|ACQ49412.1| DNA polymerase I [Bacillus anthracis str. A0248] Length = 877 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 385 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K KM+E + + Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 439 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 440 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 499 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 500 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 558 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 617 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 618 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 652 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + Sbjct: 653 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 712 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 713 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 767 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 768 -----------------------------------------LNRRRYIPEITSRNFNLRS 786 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 787 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 817 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 818 EEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|150015687|ref|YP_001307941.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052] gi|149902152|gb|ABR32985.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052] Length = 867 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 93/640 (14%), Positives = 178/640 (27%), Gaps = 141/640 (22%) Query: 45 WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 +VLK +E+ +V V H+ T L ++I T + A Sbjct: 354 ISSKDSEEALKVLKNLMEDDNVKKVIHDGKNFVTFLNKNQ-IEIKGFD-FDTAIAAYLID 411 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 + K E + + E + Sbjct: 412 SSKS-------------KYEILELVNHYIGDNPNSEGSNIKAILCSYLPMVYEKLKENLH 458 Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 +++ E L Y+ ++ G+ ++ + L E K +E+ Sbjct: 459 KENMDQLYY------EVEHPLIYVLSSMESIGFNINQGMLDELQTKFKKEIDKTQKEIYE 512 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 L + ++L LF + L + T+ +T Q VL ++ R Sbjct: 513 L-ADEEFNISSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLMNKHDIIPKIMYYRQ 571 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ + L ++ DGR+ + TGR S QN+P E Sbjct: 572 -ITKINSTYVEGLKNVVDEDGRIHSNFNQTVTT-TGRLSSTEPNLQNIPIKYEMGRE--- 626 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R I E LV D + IE RVLA +AG++ + Sbjct: 627 ----------------------IRKVFIPMEETDILVSCDYSQIELRVLAHIAGDENMID 664 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE D++ T + F V +VT R+ K + + G++ Sbjct: 665 AFEHHSDIHTKTASEVFKVPIGEVTSLMRSRAKAVNFGIV--------------YGIS-- 708 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A + E + +++ ++ E Sbjct: 709 ----------------------------AFSLAEDLKITKKEAEEYMSIYLERYPKIKEY 740 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 L ++ E G + R ++ ++ + Sbjct: 741 ---LENVVDEAKEKGYVLTILN-----------------------RRRFIPEIKSSNKIV 774 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 R +Q + DI+ M+N +++L VHDE++ Sbjct: 775 KAL---GDRLAMNAP------IQGSAADIIKLAMVNVYNKLNEKELKSELILQVHDELIL 825 Query: 635 ETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + L M + + L + + Sbjct: 826 NVKKDEFEEVKNLVAYEMENAIK--LKVALDVDVNFGDTW 863 >gi|163814036|ref|ZP_02205428.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759] gi|158450485|gb|EDP27480.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759] Length = 886 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 91/682 (13%), Positives = 186/682 (27%), Gaps = 154/682 (22%) Query: 18 KCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---PVMPQVLKEALENTDVTIVAHNSY 74 K G+ ++ + A D V + + + M ++++ + + Sbjct: 329 KAGMYVISDSDILYGIAITCDARTVYVINSMSGVSSDAMSDIVRDIKTSGTSICIG---- 384 Query: 75 FERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALK---LSSQKMEEGKE 128 + + + + A + + L S+K GKE Sbjct: 385 -DIKSCLNDMDFSECDTNVLDVGIAAYLLNPLENSYNYDDISKEYLEVMLPSEKELTGKE 443 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV-------TREIFKRLEPLSSK 181 + F + A++ D + +++ + Sbjct: 444 ELNAFTFISDNFLELF--------AYKALVPLLAMDTLIEKLKGTGMYDLYM------NV 489 Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E Y + RG VD + ++ +L + G + ++L Sbjct: 490 ELPTVYTLHDMEKRGVRVDRTALEEYSHKLESRIKELHDSIIE-YAGKDFNINSPKQLGP 548 Query: 242 WLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + L T+ +T VL K + P + R S+ L + Sbjct: 549 VLFEDMALPGGKKTKTGYSTSADVLEKIKNVHPIINDILEYRQ-LSKLNSTYAIGLGSFI 607 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +SDGR+ GT + TGR S QN+P Sbjct: 608 SSDGRIHGTFNQ-TITATGRISSTDPNLQNIPMRMELGR--------------------- 645 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R I +G V AD + +E RVLA ++ + AF+ D++ TT + F Sbjct: 646 ----LIRKAFIPQDGFVFVDADYSQVELRVLAHLSDDSVMKNAFQNNIDIHSTTASEVFG 701 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 V +VT QR K + G++ Sbjct: 702 VPIDEVTPLQRRHAKAVNF--------------GIVYGIS-------------------- 727 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 + + + + + + + + ++ Sbjct: 728 ----------AFGLSEDLGISRKEASDFIEKYYDTYKSIKTYLDGQVKFAKE-------- 769 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 N + GR ++ ++ + R Sbjct: 770 ------------------NGYVKTMFGRIRPIPELKSSNFMQRSF---GERVAMNSP--- 805 Query: 599 ENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLM 651 +Q + DI+ M++ ++L +HDE++ ET + + M Sbjct: 806 ---IQGSAADIIKIAMLHVNIKLKELGLKSRLILQIHDELLIETAKDEVDTVRKILVDEM 862 Query: 652 TSNPSWAKGLPLKAEGYESKRY 673 +PL+ + Sbjct: 863 MHAADMT--VPLEVGVASGNNW 882 >gi|165869628|ref|ZP_02214286.1| DNA polymerase I [Bacillus anthracis str. A0488] gi|254754671|ref|ZP_05206706.1| DNA polymerase I [Bacillus anthracis str. Vollum] gi|164714457|gb|EDR19976.1| DNA polymerase I [Bacillus anthracis str. A0488] Length = 877 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 385 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K KM+E + + Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 439 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 440 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 499 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 500 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 558 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 617 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 618 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 652 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + Sbjct: 653 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 712 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 713 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 767 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 768 -----------------------------------------LNRRRYIPEITSRNFNLRS 786 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 787 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 817 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 818 EEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|228910411|ref|ZP_04074226.1| DNA polymerase I [Bacillus thuringiensis IBL 200] gi|228849177|gb|EEM94016.1| DNA polymerase I [Bacillus thuringiensis IBL 200] Length = 891 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 96/656 (14%), Positives = 188/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + K+ L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQKDIALKSDAFKDWLADGEMRKHTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +DI L+ A K K ++ K + KG + Sbjct: 400 IDIQGVD-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELK 456 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V E ++ E + E L + + +G VD Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|75762014|ref|ZP_00741928.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903104|ref|ZP_04067240.1| DNA polymerase I [Bacillus thuringiensis IBL 4222] gi|74490500|gb|EAO53802.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228856513|gb|EEN01037.1| DNA polymerase I [Bacillus thuringiensis IBL 4222] Length = 891 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 96/656 (14%), Positives = 188/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + K+ L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQKDIALKSDAFKDWLADGEMRKHTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +DI L+ A K K ++ K + KG + Sbjct: 400 IDIQGVD-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELK 456 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V E ++ E + E L + + +G VD Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|196040840|ref|ZP_03108138.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99] gi|196028294|gb|EDX66903.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99] Length = 877 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 385 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K KM+E + + Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 439 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 440 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 499 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 500 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 558 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 617 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 618 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 652 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + Sbjct: 653 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 712 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 713 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 767 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 768 -----------------------------------------LNRRRYIPEITSRNFNLRS 786 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 787 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 817 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 818 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|229198735|ref|ZP_04325433.1| DNA polymerase I [Bacillus cereus m1293] gi|228584757|gb|EEK42877.1| DNA polymerase I [Bacillus cereus m1293] Length = 891 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 182/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K KM+E + + Sbjct: 400 IDVQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ + AF+ D++ T F V +VT + R K + Sbjct: 667 ADYSQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|218899740|ref|YP_002448151.1| DNA polymerase I [Bacillus cereus G9842] gi|218542969|gb|ACK95363.1| DNA polymerase I [Bacillus cereus G9842] Length = 877 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 96/656 (14%), Positives = 188/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + K+ L + ++ ++ LK Sbjct: 329 HKADIQGFG--IQNENGCYFIQKDIALKSDAFKDWLADGEMRKHTFDAKRAIVALKWN-G 385 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +DI L+ A K K ++ K + KG + Sbjct: 386 IDIQGVD-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELK 442 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V E ++ E + E L + + +G VD Sbjct: 443 VVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 561 VLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 619 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 620 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 654 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 655 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 715 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 767 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 768 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 787 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 788 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 819 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 820 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|52140922|ref|YP_085907.1| DNA polymerase I [Bacillus cereus E33L] gi|51974391|gb|AAU15941.1| DNA polymerase I [Bacillus cereus E33L] Length = 891 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K KM+E + + Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|228960856|ref|ZP_04122489.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798752|gb|EEM45732.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str. T13001] Length = 891 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 95/656 (14%), Positives = 188/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K K ++ K + KG + Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELK 456 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V + ++ E + E L + + +G VD Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 516 CNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 575 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|229141312|ref|ZP_04269850.1| DNA polymerase I [Bacillus cereus BDRD-ST26] gi|228642093|gb|EEK98386.1| DNA polymerase I [Bacillus cereus BDRD-ST26] Length = 891 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 182/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K KM+E + + Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ + AF+ D++ T F V +VT + R K + Sbjct: 667 ADYSQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|49481342|ref|YP_038632.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str. 97-27] gi|229093683|ref|ZP_04224782.1| DNA polymerase I [Bacillus cereus Rock3-42] gi|49332898|gb|AAT63544.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228689568|gb|EEL43376.1| DNA polymerase I [Bacillus cereus Rock3-42] Length = 891 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K KM+E + + Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|206977131|ref|ZP_03238030.1| DNA polymerase I [Bacillus cereus H3081.97] gi|217962066|ref|YP_002340636.1| DNA polymerase I [Bacillus cereus AH187] gi|206744616|gb|EDZ56024.1| DNA polymerase I [Bacillus cereus H3081.97] gi|217064111|gb|ACJ78361.1| DNA polymerase I [Bacillus cereus AH187] Length = 877 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 182/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 385 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K KM+E + + Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 439 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 440 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 499 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 500 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 558 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 617 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 618 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 652 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ + AF+ D++ T F V +VT + R K + Sbjct: 653 ADYSQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 712 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 713 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 767 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 768 -----------------------------------------LNRRRYIPEITSRNFNLRS 786 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 787 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 817 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 818 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|228967684|ref|ZP_04128704.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001] gi|228792017|gb|EEM39599.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001] Length = 891 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 96/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + K+ L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQKDIALKSDAFKDWLADGEMRKHTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +DI L+ A K K ++ K + KG + Sbjct: 400 IDIQGVD-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELK 456 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V E ++ E + E L + + +G VD Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKRKGYVATL-- 781 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|301056092|ref|YP_003794303.1| DNA polymerase I [Bacillus anthracis CI] gi|300378261|gb|ADK07165.1| DNA polymerase I [Bacillus cereus biovar anthracis str. CI] Length = 877 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 385 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K KM+E + + Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 439 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 440 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 499 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 500 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 558 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 617 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 618 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 652 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + Sbjct: 653 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 712 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 713 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 767 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 768 -----------------------------------------LNRRRYIPEITSRNFNLRS 786 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 787 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 817 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 818 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|206969813|ref|ZP_03230767.1| DNA polymerase I [Bacillus cereus AH1134] gi|206735501|gb|EDZ52669.1| DNA polymerase I [Bacillus cereus AH1134] Length = 877 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 95/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 385 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K K ++ K + KG Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPKLE 442 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V + ++ E + E L + + +G VD Sbjct: 443 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 561 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 619 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 620 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 654 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 655 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 715 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 767 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 768 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 787 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 788 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 819 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 820 GLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|229180906|ref|ZP_04308241.1| DNA polymerase I [Bacillus cereus 172560W] gi|229192788|ref|ZP_04319746.1| DNA polymerase I [Bacillus cereus ATCC 10876] gi|228590627|gb|EEK48488.1| DNA polymerase I [Bacillus cereus ATCC 10876] gi|228602463|gb|EEK59949.1| DNA polymerase I [Bacillus cereus 172560W] Length = 891 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 95/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K K ++ K + KG Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPKLE 456 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V + ++ E + E L + + +G VD Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 575 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|118479734|ref|YP_896885.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam] gi|229186842|ref|ZP_04313997.1| DNA polymerase I [Bacillus cereus BGSC 6E1] gi|118418959|gb|ABK87378.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam] gi|228596579|gb|EEK54244.1| DNA polymerase I [Bacillus cereus BGSC 6E1] Length = 891 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K KM+E + + Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|42783764|ref|NP_981011.1| DNA polymerase I [Bacillus cereus ATCC 10987] gi|42739694|gb|AAS43619.1| DNA polymerase I [Bacillus cereus ATCC 10987] Length = 877 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 385 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K KM+E + + Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 439 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 440 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 499 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 500 RLRNMGEELAGRLKEMEQEIYKLAG-REFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 558 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 617 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 618 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 652 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + Sbjct: 653 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 712 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 713 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 767 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 768 -----------------------------------------LNRRRYIPEITSRNFNLRS 786 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 787 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 817 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 818 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|196047493|ref|ZP_03114704.1| DNA polymerase I [Bacillus cereus 03BB108] gi|225866564|ref|YP_002751942.1| DNA polymerase I [Bacillus cereus 03BB102] gi|196021708|gb|EDX60404.1| DNA polymerase I [Bacillus cereus 03BB108] gi|225785727|gb|ACO25944.1| DNA-directed DNA polymerase [Bacillus cereus 03BB102] Length = 877 Score = 293 bits (750), Expect = 7e-77, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 385 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K KM+E + + Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 439 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 440 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 499 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 500 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 558 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 617 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 618 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 652 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + Sbjct: 653 ADYSQIELRVLAHIANDKGLVEAFKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 712 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 713 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 767 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 768 -----------------------------------------LNRRRYIPEITSRNFNLRS 786 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 787 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 817 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 818 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|88800524|ref|ZP_01116087.1| DNA polymerase I [Reinekea sp. MED297] gi|88776755|gb|EAR07967.1| DNA polymerase I [Reinekea sp. MED297] Length = 933 Score = 293 bits (750), Expect = 7e-77, Method: Composition-based stats. Identities = 92/670 (13%), Positives = 180/670 (26%), Gaps = 132/670 (19%) Query: 31 ILFAFGFDDHPVELWDCVHDP-------VMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 + A + + + L E+ + ++ + Sbjct: 365 VGLALATEPGRGWYLVFQSEESKVLDEAEVFNKLIPLFEDHAIVKTGYDIKADYHWF-NA 423 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALK-AVGEALKLSSQKMEEGKELIARFCKGETHECL 142 N+ P V+A ++ S + L E + Sbjct: 424 LNIS-PSRLLNDVQVMAFVYDSTLKRDKSLSAHFSHLSIDNLVIQYLQKSPKTVEDYLGK 482 Query: 143 -YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQT 191 R G++ + + LE E+ L Sbjct: 483 AGKRQLSPSAVKADDIGQWWAERADFVLRLGQWLEQGLASRQLSRVYQEIERPLSKTLAA 542 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 I + G +DV H L+ + ++++ L + ++L LF GL + Sbjct: 543 IEENGVKLDVEFVHELSTRFKRDLEDIERQAHDLAGV-EFNLDSPKQLADVLFERMGLPV 601 Query: 252 EDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM---NSDGRL 304 + T +T + VL+ + +R + + L + D RL Sbjct: 602 KSKTASGAPSTNEEVLTELAAEHELPRLILQSRR-LRKLVGTYTDPLPTMTIDHDGDQRL 660 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 T GA +TGR + QN+P S + Sbjct: 661 HTTYNQTGA-QTGRLNSNDPNLQNIPVRSEEGR-------------------------SI 694 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R +A +G ++V AD + IE R++ ++ + ++AF G+D++ T A + QV Sbjct: 695 RKAFVAPQGYRIVAADYSQIELRIMTHLSQDANLIQAFREGKDIHRATAAEVMGIEEEQV 754 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 + +QR K + L Y A L ++ ++ E + + Sbjct: 755 SAEQRRSAKAINFGLIYGMSA-----FGLARQLGISRTEAKTYVDAYFERYPGVRRYMDE 809 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + E + G R + +Q + E + Sbjct: 810 TRAEAAESGYVETVFGR---------RLYLPGI----QSSNQIARKAAERTAINAPMQGT 856 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 ++ M + L S R+ Sbjct: 857 AADIIKMAMVDVDNWLSNSSLRAR------------------------------------ 880 Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPL 663 M+ + VHDE+V E + D + M +PL Sbjct: 881 ---------MI----------MQVHDELVFEVHEDDVAALTEGVRFRMQHCA--NLDVPL 919 Query: 664 KAEGYESKRY 673 + + Sbjct: 920 IVDVDTGASW 929 >gi|324328479|gb|ADY23739.1| DNA polymerase I [Bacillus thuringiensis serovar finitimus YBT-020] Length = 877 Score = 293 bits (750), Expect = 7e-77, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 385 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K KM+E + + Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 439 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 440 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 499 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 500 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 558 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 617 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 618 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 652 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + Sbjct: 653 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 712 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 713 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 767 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 768 -----------------------------------------LNRRRYIPEITSRNFNLRS 786 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 787 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 817 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 818 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|229163579|ref|ZP_04291528.1| DNA polymerase I [Bacillus cereus R309803] gi|228619829|gb|EEK76706.1| DNA polymerase I [Bacillus cereus R309803] Length = 891 Score = 293 bits (750), Expect = 7e-77, Method: Composition-based stats. Identities = 97/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L N ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLANGEMRKHTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +DI L+ A K K ++ K + KG Sbjct: 400 IDIQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y + E ++ E + E L + + +G VD Sbjct: 457 VVAEH-VARKVHVLYDVKQTFIEELEKNEQYELFTELELPLARVLADMEVKGVKVDTDRL 515 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSCKIHTRFNQVLTQTGRLSS 633 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQNDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL-- 781 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|229814975|ref|ZP_04445313.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM 13280] gi|229809462|gb|EEP45226.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM 13280] Length = 931 Score = 293 bits (750), Expect = 7e-77, Method: Composition-based stats. Identities = 96/602 (15%), Positives = 165/602 (27%), Gaps = 139/602 (23%) Query: 88 IPIHRWICTLVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + R T+V A + + E +S G++ + Sbjct: 449 VDSTRLFDTVVAAYLLDSVRSDFTDAYLAETYLHASLPSAAGED--GAPADAVSIAARGA 506 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 RE E D T E L + ++ G VD A Sbjct: 507 WLARTLREPLAAALEAQGADAIFT-----------KIEMPLVRVLASMERAGMYVDPARL 555 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TT 258 + + + L+ + L G + +L LF GL L + +T Sbjct: 556 AAQSDELVGQIQALEARIRELAGGEEFNLSSPMQLSRILFDTLGLPTAGLKKTQRGYYST 615 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 +VL K + R ++ L+TL DGR+ T + TGR Sbjct: 616 NAKVLEDLAKNHEIVRLILEFR-EKTKIKSTYLDTLGPLRRHDGRVHTTYNQ-TITATGR 673 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378 S QN+P S + V+ EG V Sbjct: 674 LSSSSPNLQNIPTRSE-------------------------LGHAVKRAFSVEEGSVFVA 708 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 D + IE R+LA ++G++ + AF GED + T AR F V +VT R+ K + Sbjct: 709 IDYSQIELRLLAHLSGDEHLVSAFNEGEDFHAETAARVFGVPVDEVTPQLRSRAKAVNFG 768 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + + + Sbjct: 769 IV--------------------------------------------YGQQAYGLSQTLDI 784 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + A+ + + V +E +QT Sbjct: 785 PMAEAREMIDAYFRAYPGVRTYLDETVTFAKQT--------------------------G 818 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 GR ++ + R +Q + DI+ M++ Sbjct: 819 YAETMYGRRRPIPELRIPAQRM-----FGERTAMNHP------MQGSAADIIKIAMVHVA 867 Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESK 671 + ++L VHDE+ E P + +M+ M +PL A+ + Sbjct: 868 ERLRAEGFTAKMILQVHDELDFECPVGEVDRLIAMVREEMEGVAE--LRVPLIADASIGE 925 Query: 672 RY 673 + Sbjct: 926 TW 927 >gi|229152782|ref|ZP_04280965.1| DNA polymerase I [Bacillus cereus m1550] gi|228630602|gb|EEK87248.1| DNA polymerase I [Bacillus cereus m1550] Length = 891 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 95/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K K ++ K + KG Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V + ++ E + E L + + +G VD Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 575 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|152966895|ref|YP_001362679.1| DNA polymerase I [Kineococcus radiotolerans SRS30216] gi|151361412|gb|ABS04415.1| DNA polymerase I [Kineococcus radiotolerans SRS30216] Length = 933 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 107/686 (15%), Positives = 193/686 (28%), Gaps = 142/686 (20%) Query: 18 KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFE 76 V A D D + + L L + D VAH+ Sbjct: 355 HVTGEWSRGSGEVTGLALAGADGVAAWIDPLTLEPADEQALAAWLADPDRPKVAHDVKGP 414 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVG-----EALKLSSQKMEEGKE 128 L + + T + A L + L+ + Sbjct: 415 SHALL-ARGWTLA-GVVLDTALAAYLCRPDQRSYDLADLAVRHLKRELRAEGSTGGADAD 472 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELW 186 + + + + + E + + E+ +R E L Sbjct: 473 VDEQLTLDGSDGPVGGDQQARAEEGMVRALAISELAGVLAAELEERGGTRLLHEVELPLV 532 Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + G VD L L + + + + + ++L+T LF + Sbjct: 533 AVLAAQERVGIAVDDELLADLEARFAERVAQAQAQAYEVIGTEI-NLGSPKQLQTVLFEQ 591 Query: 247 TGLHLEDLTET---TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + T+T T L++ K P + +R ASR + L +++ D Sbjct: 592 LDMPKTKRTKTGYTTDADALAALFVKTEHPFLAHLLEHR-DASRLRQT-VEGLRKSVADD 649 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 GR+ T Q + A+ TGR S QN+P + Sbjct: 650 GRIHTTYQQMIAA-TGRLSSTDPNLQNIPIRTEEGRR----------------------- 685 Query: 362 DCVRSCVI------ASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R + A +G + L+ AD + IE R++A ++G++ + AF +GEDL+ + Sbjct: 686 --IREAFVVGPDAGAGDGYECLLTADYSQIEMRIMAHLSGDEGLISAFTSGEDLHRFVGS 743 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 R F VAP VT + RA K M L Y + L Sbjct: 744 RVFGVAPVDVTPEMRAKIKAMSYGLAYG-----LSAFGLSNQL----------------- 781 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + + + Q+ V + + + + +T Sbjct: 782 ----------------------KISTEEAKDLMDEYFQRFGGVRDYLHGVVEEARRT--- 816 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 GR D+ ++ R Sbjct: 817 -----------------------GWTETIMGRRRYLPDLASDN---RQRREMAERMALNA 850 Query: 595 GKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLY 648 +Q + DI+ M++ ++L VHDE+V E + L Sbjct: 851 P------IQGSAADIIKVAMLDLDAGLREAGLRSRLLLQVHDELVLEVARGEREPLEELV 904 Query: 649 H-LMTSNPSWAKGLPLKAEGYESKRY 673 M A +PL + + Sbjct: 905 RATMAGAADLA--VPLDVSVGVGRSW 928 >gi|229048294|ref|ZP_04193862.1| DNA polymerase I [Bacillus cereus AH676] gi|228723019|gb|EEL74396.1| DNA polymerase I [Bacillus cereus AH676] Length = 891 Score = 293 bits (749), Expect = 8e-77, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K KM+E + + Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y V E ++ E + E L + + +G VD Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 573 ADVLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|218232627|ref|YP_002369383.1| DNA polymerase I [Bacillus cereus B4264] gi|218160584|gb|ACK60576.1| DNA-directed DNA polymerase [Bacillus cereus B4264] Length = 877 Score = 293 bits (749), Expect = 8e-77, Method: Composition-based stats. Identities = 95/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 385 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K K ++ K + KG Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 442 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V + ++ E + E L + + +G VD Sbjct: 443 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 561 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 619 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 620 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 654 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 655 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 715 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 767 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 768 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 787 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 788 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 819 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 820 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|94985766|ref|YP_605130.1| DNA polymerase I [Deinococcus geothermalis DSM 11300] gi|94556047|gb|ABF45961.1| DNA polymerase I [Deinococcus geothermalis DSM 11300] Length = 907 Score = 293 bits (749), Expect = 8e-77, Method: Composition-based stats. Identities = 90/533 (16%), Positives = 159/533 (29%), Gaps = 129/533 (24%) Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIV 211 +T + + L P + + Y + + + RG +D L++ + Sbjct: 480 AATRAAITYRLLQDLPPHLDEARRKLYEEVEKPLSAVLKRMEVRGVRLDSDYLRGLSEAL 539 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSN 266 L+ E+ L + R ++L+T L+ E GL T+ +T L Sbjct: 540 AGRIATLEAEIHRLAG-REFAIRSRDQLETVLYDELGLASGKKTKLTGKRSTAVSALEPL 598 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFP 325 + P + R + L+ L +N GRL T A+ TGR S Sbjct: 599 RNEHPIIPALLEYR-ELEKLRGTYLDPLPNLVNPRTGRLHTTFSQTTAA-TGRLSSLNPN 656 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S E +R IA EG L+ AD + IE Sbjct: 657 LQNIPIRSELGRE-------------------------IRKGFIADEGYCLISADYSQIE 691 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A + +AF G D++ T A+ +A +T +QR K + Sbjct: 692 LRLLAAIADDPLMQQAFREGADIHRRTAAQVLGLAEDAITPNQRRAAKTVN--------- 742 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ + E + Sbjct: 743 -----FGVLYGMS------------------------------AHRLSNELGIPYAEAAQ 767 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + + + + + + E+G G Sbjct: 768 FIDVYFNTYPGIRRY---IERTLDFGREHGYVETLY-----------------------G 801 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621 R ++ + R +Q + DI+ M+ + G Sbjct: 802 RRRYVPELKSQN---RVIREAGERLAYNMP------IQGTAADIIKIAMVRLDQELDALG 852 Query: 622 YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P T + L +M +PL E + Sbjct: 853 ARLLLQVHDELLIEAPATQADRVAALTREVMEQAAH--LSVPLAVEVGTGPNW 903 >gi|228954856|ref|ZP_04116876.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804845|gb|EEM51444.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 891 Score = 293 bits (749), Expect = 9e-77, Method: Composition-based stats. Identities = 95/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K K ++ K + KG Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPKLE 456 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V + ++ E + E L + + +G VD Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 575 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIV 728 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|229072089|ref|ZP_04205298.1| DNA polymerase I [Bacillus cereus F65185] gi|229081839|ref|ZP_04214331.1| DNA polymerase I [Bacillus cereus Rock4-2] gi|228701427|gb|EEL53921.1| DNA polymerase I [Bacillus cereus Rock4-2] gi|228711023|gb|EEL62989.1| DNA polymerase I [Bacillus cereus F65185] Length = 891 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 95/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K K ++ K + KG Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPKLE 456 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V + ++ E + E L + + +G VD Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 575 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIV 728 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|309389718|gb|ADO77598.1| DNA polymerase I [Halanaerobium praevalens DSM 2228] Length = 880 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 101/669 (15%), Positives = 192/669 (28%), Gaps = 142/669 (21%) Query: 18 KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER 77 K A + F F + + +K LE+ V + ++ Sbjct: 331 KLETGSKAISGKIDKILFYFKNETKMYIYHPEAK-IAAEIKFILESKKVKKLMPDAK--- 386 Query: 78 TVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136 + ++ + L+ S+L + E L EL F + Sbjct: 387 LAFLSLLKNEVKVAGISFEPLLAFYLLQPSSSLPELEEVL---------SHELSLSFTEL 437 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 ET + L + +L + + L E L + + G Sbjct: 438 ETEQKLAVKTSKLFELETKLITK---------LKENNLLNLYQEIELPLIKVLAQMELNG 488 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD L++ + + + L + ++L LF + GL + T+ Sbjct: 489 VKVDKDWLANLSEKLGKRLAIITDKAHKLAG-EEFNLNSPKQLGEILFEKLGLPVIKRTK 547 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + + + ++ +++L +N + T Sbjct: 548 TGYSTNASVLEKLEGKHEIIP-LISEYRELAKLKSTYIDSLPPLINDETAKIHTSFNQMV 606 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SE 372 + TGR S QN+P + E +R I Sbjct: 607 TATGRLSSTEPNLQNIPIRTEEGRE-------------------------IRKAFIPSRS 641 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 L+ D + IE RV A ++G+Q +AF D++ T A F V VT D R Sbjct: 642 DMILLAVDYSQIELRVFAHLSGDQKLKEAFNNEADIHTETAAEVFEVKAEAVTPDLRRHA 701 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 KV+ + Y A + L++ + E + + + E + Sbjct: 702 KVINFGIAYGMSA-----YGLSQDLDIPVEEAQTYIDKYFERFSGVKKYMEQTIEKVKKL 756 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + +RR +P + Sbjct: 757 GYAETMF-----------------------------------------GRRRYIPEINSS 775 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R+ +NT VQ + DI+ + Sbjct: 776 NYHRRSF---------------AERTAINTP------------------VQGTAADIMKK 802 Query: 613 GMMNAT------KAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 M++ + +I+L VHDE+V E + + A ++ M + +PL Sbjct: 803 SMLDVYSCLKKSELDLNILLQVHDELVFEVNRNDLDEAAELIKEKMENTTK--LDVPLIV 860 Query: 666 EGYESKRYR 674 + + +R Sbjct: 861 DLQIGENWR 869 >gi|317484592|ref|ZP_07943496.1| DNA polymerase I [Bilophila wadsworthia 3_1_6] gi|316924132|gb|EFV45314.1| DNA polymerase I [Bilophila wadsworthia 3_1_6] Length = 874 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 102/661 (15%), Positives = 184/661 (27%), Gaps = 165/661 (24%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF----ERTVLKA-CFNLD 87 A D + P + L + + F + L + Sbjct: 357 LAIAVGDKEIVYTGLT--PKLVDRLLK-------------AKFVIAPDVKALLHTHADWG 401 Query: 88 -IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 IP +W + + G L G + Sbjct: 402 RIPPEKWFDLGLASYLLEPED------RDYGWPKLSARWGTAL------GLSAANPGLLA 449 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 + + ++ T E+ L + + G +D Sbjct: 450 LTMTDQLLKRLSGAHLVELMKTLEL------------PLIPVLADMESAGVKLDAEALAD 497 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRV 262 + V + ++ +++ + R ++L LF L + T +T Q V Sbjct: 498 FLEEVQKDLDRITEDVYR-EAQGPFNIRSAQQLGDVLFNRLKLPVSGKTRGGQASTSQDV 556 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L P + R + + L L M DGR+R T L A+ TGR S Sbjct: 557 LEKLSGHHPVVDALLEFR-KLEKLRSTYLEPLPRLMGGDGRIRTTFNQL-ATATGRLSSS 614 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 QN+P +R+C A EGKKL+ AD + Sbjct: 615 NPNLQNIPVRGALGRR-------------------------MRACFTAPEGKKLISADYS 649 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RVLA ++ ++ L AF G D++ T + F+ P+++T DQR K + Sbjct: 650 QIELRVLAHLSRDETLLAAFREGADIHARTASLLFDAPPSEITPDQRRNAKTINF----- 704 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 G+ A E + Sbjct: 705 ---------GLIYGMGPQKLAQ------------------------------ELKIPLSE 725 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + + ++ + + + + + G Sbjct: 726 AKAFMARYFERLQGLKHFYENVEEMARE---QGYVTTLA--------------------- 761 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--- 619 GR D+ R+ ++Q + DI+ M+ Sbjct: 762 --GRRRPLPDIQAESQ---QARSLARRQAI------NTLIQGSAADIIKLAMLAVHGDET 810 Query: 620 ---AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS--WAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ A + LM + +PLKA+ ++ + Sbjct: 811 LRTLDAKLLLQVHDELLLEVPEAAAQEAGERVAALMANVRPGGIVLDVPLKADWGAAENW 870 Query: 674 R 674 Sbjct: 871 G 871 >gi|304440505|ref|ZP_07400392.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370983|gb|EFM24602.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC BAA-1640] Length = 882 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 84/637 (13%), Positives = 185/637 (29%), Gaps = 143/637 (22%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSAL 109 + + L+ E+ + + +++ + +L + I + ++++ ++ Sbjct: 355 KDIVEDLRALFEDEKIEKIGYDAKEDVIIL---LSKKIDLKNLTYDSMIVEYLLDSTAS- 410 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 Q + +L + + ++ + K +Y + + Sbjct: 411 -------SFEFQNIISKYDLGSYKDE-QSLLGKGVKKKSYSDLEKDELFKYFSFILNGSF 462 Query: 170 EIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 ++ + E L + + G +V++ + + +D L Sbjct: 463 KLKEIQMEKLEELEMVDLYREIELPLLEVLAYMELTGIKTEVSVLDDIGKNLDDRIENLT 522 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQV 276 + ++ + ++L LF + L + T+ +T Q VL +P + Sbjct: 523 SSIFEISG-EEFNINSTKQLGEILFDKLRLTVIKKTKTGYSTAQDVLEKLVDESPIIENI 581 Query: 277 FNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R + ++ ++ L +N GR+ G + TGR S QN+P S Sbjct: 582 LEYR-KLTKLKNTYIDGLKALINEKTGRIHSRFNQTG-TSTGRISSTEPNLQNIPIRSEE 639 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +R +ASE LV D + IE RVLA ++ + Sbjct: 640 GR-------------------------LIRGAFLASEDSTLVDCDYSQIELRVLASLSKD 674 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 ++AFE G D++ T + F+V VT R+ K + + Y + Sbjct: 675 PRMMEAFEHGMDIHTKTASEVFHVDKEDVTDLLRSRAKAVNFGIVYG-----ISDFGLSR 729 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L + + Sbjct: 730 QL---------------------------------------GITRELAKEYIDGYFDNFK 750 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +V E + + ++ + R ++ Sbjct: 751 KVKEYMDYEIETGKK--------------------------QGYVKTIFNRRRYIPELSA 784 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629 R +Q + DI+ M+ ++LT+H Sbjct: 785 KNF---NIRSFGERIA------LNTPIQGSAADIIKIAMVKVYGEIKKRNLKSKLILTIH 835 Query: 630 DEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKA 665 DE+V + + + L +M + +PLK Sbjct: 836 DELVVDAVNDELEVVEELMKDIMENAVK--LNVPLKV 870 >gi|116513094|ref|YP_812001.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11] gi|116108748|gb|ABJ73888.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11] Length = 877 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 97/675 (14%), Positives = 191/675 (28%), Gaps = 150/675 (22%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVAH 71 L G + E + AF + + D + + P+ Sbjct: 332 LETLGENYHREQ----IVAFAWGNAEKIYVSKNLDLLTEMKFPEN--------------- 372 Query: 72 NSYFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 ++ VL + N+++P+ + ++ K A + +E Sbjct: 373 --TYDFKKNRVLLSHLNIELPLVK-FDAMLAKYLISTTEDNKISTIARLFDVGHLATDEE 429 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 F KG D +H K + ++ LS E L + Sbjct: 430 ---IFGKGTKLALPDDEILFDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEV 486 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G V + + + L +E+ L + ++L LF + Sbjct: 487 LAKMEITGISVSQNTLEEIGAENEEKLALLTREIYELAG-EEFNINSPKQLGVILFEKLQ 545 Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+ +T VL L+P ++ R ++ + L+ + DG++ Sbjct: 546 LPVGKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQ-INKVQSTYVKGLIPQIADDGKIH 604 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 ++TGR S QN+P + +R Sbjct: 605 TRYVQD-LTQTGRLSSVDPNLQNIPVRLEEGRK-------------------------IR 638 Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + S+ L+ +D + IE RVLA ++ ++ + AF+ G D++ +T R F + A+ Sbjct: 639 KAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTSMRVFGIEKAE-- 696 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 + A NF Sbjct: 697 -----------------------------------------DVTANDRRNAKAVNFGVVY 715 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + A + + + +++ + + + Sbjct: 716 GISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARD--------------- 760 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 + S R D+ R +Q Sbjct: 761 -----------KGFVETMSHRRRKIPDINARNF---NVRGFAERTAINSP------IQGS 800 Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWA 658 + DIL M+N KA ++L VHDEI+ + P + ++ M A Sbjct: 801 AADILKIAMINLDKALTERQSKSKLLLQVHDEIILDVPLEELEEIQVLVKETMEEAIELA 860 Query: 659 KGLPLKAEGYESKRY 673 +PLK + K + Sbjct: 861 --VPLKVDENTGKTW 873 >gi|228923331|ref|ZP_04086619.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836285|gb|EEM81638.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 891 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 95/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K K ++ K + KG Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V + ++ E + E L + + +G VD Sbjct: 457 VVAEH-VARKVHVLYDIKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTDRL 515 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 575 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIQKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|257784906|ref|YP_003180123.1| DNA polymerase I [Atopobium parvulum DSM 20469] gi|257473413|gb|ACV51532.1| DNA polymerase I [Atopobium parvulum DSM 20469] Length = 912 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 94/600 (15%), Positives = 161/600 (26%), Gaps = 141/600 (23%) Query: 88 IPIHRWICTLVLARSNGLPSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 I R T V A + G ++ E + I Sbjct: 436 IDSDRLFDTGVAAYLLESDRSSFDINGLVELYFGSELPEPTDEIPAAALRAVAARALVPV 495 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 E + E+F LE + + RG VD Sbjct: 496 LTKKLED------------DGSLELFTSLEMQL------LPVLAAMERRGLYVDPQKLAE 537 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQ 260 + + + + + T G + +L LF L L + +T Sbjct: 538 QSAQLGEDIAQRVASIHQ-TAGEDFNLDSPSQLSHILFDVLKLPTYGLKKTRTGFYSTNA 596 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 +VL + V R ++ L+ L + D R+ TL + TGR S Sbjct: 597 KVLGELAQEYQIVADVLEYR-ERAKIKSTYLDALPSLIRGDKRIHTTLNQ-TVTATGRLS 654 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380 QN+P S + VR+ EG + D Sbjct: 655 SSDPNLQNIPTRSE-------------------------LGHRVRTAFTVPEGSVFLACD 689 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA ++ ++ + AF +G D + T AR F V +VT R+ K + + Sbjct: 690 YSQIELRLLAHLSADEHLVAAFNSGADFHAATAARVFGVPVEEVTPALRSRAKAVNFGIV 749 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 + A Sbjct: 750 --------------------------------------------YGQQAFGLATSLKISR 765 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + + + V L + E G AI Sbjct: 766 KEAQEMIDRYFDAYPGVRAY---LDDSVRTAHECGYAITMY------------------- 803 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 GR R+ + R +Q + DI+ M+N K Sbjct: 804 ----GRKRHIREFNQSN---RQLIAFGERTAMNHP------MQGSAADIIKIAMINVEKR 850 Query: 621 G------YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L +HDE+ E P+++ S ++ M + +PL A+ + Sbjct: 851 LRDEGLTSKLILQIHDELDLEVPESEIETVSTLVKETMEDVVT--LRVPLIADVSYGSNW 908 >gi|170730595|ref|YP_001776028.1| phage-related DNA polymerase [Xylella fastidiosa M12] gi|167965388|gb|ACA12398.1| phage-related DNA polymerase [Xylella fastidiosa M12] Length = 567 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 219/573 (38%), Positives = 286/573 (49%), Gaps = 58/573 (10%) Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQI 210 W F EY + DV R++ KRL + EL W+LDQTINDRG VD LA Sbjct: 2 DWAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGA 61 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270 V+ + L E+LT G V ++ + L L E G+ L D+ + T +R L + L Sbjct: 62 VERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCL-DDPLLP 120 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 ++ + R +AS ++ K L+ + DGRLRGTLQF GASRTGRW+G +F P NLP Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180 Query: 331 RPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 RP+ S + I + D + + S +RSC+IA KKLVVADL+ IE RV Sbjct: 181 RPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRV 240 Query: 389 LAWMAGEQWKLKAF----------------------------------------ETGEDL 408 LAW+AGE KL AF G+D+ Sbjct: 241 LAWLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDI 300 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 Y YA SF +AP VTK+QR IGKV ELALGY GG AF A+ ++L A Sbjct: 301 YKRAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL 360 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 P ++A +W + N AC+ K+AWR H ++ W L A Sbjct: 361 --PPLLLQEAVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWQALQFAA 418 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNTT- 583 I + + + ++ + L L LPSGR L Y D SY+ T Sbjct: 419 TDAIGHPETA-----HTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHP 473 Query: 584 -TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 TR+ TR TYGGKL ENI QAVSRD+LA M AGY IVLTVHDE++ E D F Sbjct: 474 ITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAF 533 Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 NA+ L LM + P WA+GLPL AEG+++ RYRK Sbjct: 534 NAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566 >gi|71898326|ref|ZP_00680499.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71731849|gb|EAO33907.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 567 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 217/573 (37%), Positives = 282/573 (49%), Gaps = 58/573 (10%) Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQI 210 W F EY + DV R++ KRL + EL W+LDQTINDRG VD LA Sbjct: 2 DWAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGA 61 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270 V+ + L E+LT G V ++ + L L E G+ L D+ + T +R L + L Sbjct: 62 VERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCL-DDPLLP 120 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 ++ + R +AS ++ K L+ + DGRLRGTLQF GASRTGRW+G +F P NLP Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180 Query: 331 RPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 RP+ S + I + D + + S +RSC+IA KKLVVADL+ IE RV Sbjct: 181 RPTLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRV 240 Query: 389 LAWMAGEQWKLKAFETGEDL---------------------------------------- 408 LAW+AGE KL AF + Sbjct: 241 LAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDI 300 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 Y YA SF +AP VTK QR IGKV ELALGY GG AF A+ ++L A Sbjct: 301 YKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL 360 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 P ++A +W + N AC+ K+AWR H ++ W L A Sbjct: 361 --PPLLLQEAVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWKALQFAA 418 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNTT- 583 I + + + M+ + L + LPSGR L Y D SY+ T Sbjct: 419 TDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHP 473 Query: 584 -TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 TR+ TR TYGGKL ENI QAVSRD+LA M AGY IVLTVHDE++ E D F Sbjct: 474 MTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAF 533 Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 NA+ L LM + P WA+GLPL AEG+++ RYRK Sbjct: 534 NAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566 >gi|125625183|ref|YP_001033666.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363] gi|146345413|sp|O32801|DPO1_LACLM RecName: Full=DNA polymerase I; Short=POL I gi|124493991|emb|CAL98989.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363] gi|300071992|gb|ADJ61392.1| DNA polymerase I [Lactococcus lactis subsp. cremoris NZ9000] Length = 877 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 98/675 (14%), Positives = 193/675 (28%), Gaps = 150/675 (22%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVAH 71 L G + E + AF + + D + + P+ Sbjct: 332 LETLGENYHREQ----IVAFAWGNSEKIYVSKNLDLLTEMKFPEN--------------- 372 Query: 72 NSYFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 ++ VL + N+++P+ + ++ K A + +E Sbjct: 373 --TYDFKKNRVLLSHLNIELPLVK-FDAMLAKYLISTTEDNKISTIARLFDVGHLATDEE 429 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 F KG D +H K + ++ LS E L + Sbjct: 430 ---IFGKGTKLALPDDEILFDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEV 486 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G V + + + L +E+ L + ++L LF + Sbjct: 487 LAKMEITGISVSQNTLEEIGAENEEKLASLTREIYDLAG-EEFNINSPKQLGVILFEKLQ 545 Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+ +T VL L+P ++ R ++ + L+ + DG++ Sbjct: 546 LPVGKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQ-INKVQSTYVKGLIPQIADDGKIH 604 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 ++TGR S QN+P + +R Sbjct: 605 TRYVQD-LTQTGRLSSVDPNLQNIPVRLEEGRK-------------------------IR 638 Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + S+ L+ +D + IE RVLA ++ ++ + AF+ G D++ +T R F + A+ Sbjct: 639 KAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGIEKAE-- 696 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 + A NF Sbjct: 697 -----------------------------------------DVTANDRRNAKAVNFGVVY 715 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + A + + + +++ + + + Sbjct: 716 GISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARD--------------- 760 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 + S R D+ R +Q Sbjct: 761 -----------KGFVETMSHRRRKIPDINARNF---NVRGFAERTAINSP------IQGS 800 Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWA 658 + DIL M+N KA ++L VHDEI+ + P + E +++ M A Sbjct: 801 AADILKIAMINLDKALTERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEAIELA 860 Query: 659 KGLPLKAEGYESKRY 673 +PLK + K + Sbjct: 861 --VPLKVDDNTGKTW 873 >gi|72161593|ref|YP_289250.1| DNA polymerase I [Thermobifida fusca YX] gi|71915325|gb|AAZ55227.1| DNA polymerase A [Thermobifida fusca YX] Length = 929 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 95/666 (14%), Positives = 174/666 (26%), Gaps = 133/666 (19%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACF 84 D +I A D + L L + V H + L Sbjct: 374 RDGDIIRLALAVPSGRAVCLDPTQLDPADEAALTAWLADPAYPKVLHGVKWALRAL-WAR 432 Query: 85 NLDIPIHRWICTLVLARSNGLPSA---LKAVGEAL--KLSSQKMEEGKELIARFCKGETH 139 + T + A L + + ++ EG +L Sbjct: 433 GWTLDGVE-SDTAIAAYLLEPGRRNFELATLCLRYLGRELTEHNAEGAQLTLDLEGTGDD 491 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 + R D +TR L L + + D G Sbjct: 492 QDTARRELALRA--LATVELALALDAELTRREGLDLLHNLE--LPLAEVLARMEDAGIAA 547 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-- 257 D+ L + E L + ++L+ LF E GL +T Sbjct: 548 DLTYLRDLEAEFAAAVRQAVDEAHRLVG-REFNLGSPKQLQQILFDELGLPKTKRIKTGY 606 Query: 258 TCQRVLSSNK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 T + + + + ++ + L++ + DGR+ T + Sbjct: 607 TTDADALAWLAAQTDNELPVILLRHRDQTKLRTT-VEGLIKTIAEDGRIHTTFHQ-TVTA 664 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P + + +R + EG + Sbjct: 665 TGRLSSAEPNLQNIPVRTDAGRR-------------------------IRRAFVVGEGYE 699 Query: 376 -LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 L+ AD + IE R++A ++ ++ ++AF +G D + +R F + QV + RA K Sbjct: 700 QLLTADYSQIELRIMAHLSEDEALIEAFHSGFDFHAQIASRVFRIPVDQVDGEARARIKA 759 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 M L GL+ A Sbjct: 760 MNYGL--------------AYGLSDYGLAQQ----------------------------- 776 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + + + +V + L + G Sbjct: 777 -LGISPKEARVLMEEYFSHFGKVRDY---LEAVVVRARREGYTATIL------------- 819 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 GR D+ ++ R +Q + DI+ M Sbjct: 820 ----------GRRRYLPDLNSDN---RQRREMAERMALNAP------IQGSAADIIKLAM 860 Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEG 667 + +A ++L VHDE+V E + ++ M+ +PL Sbjct: 861 LRVDRALRENGLASRMLLQVHDELVLEVAPGELDTVRELVVEHMSQAQQ--LRVPLAVSV 918 Query: 668 YESKRY 673 + Sbjct: 919 GVGPNW 924 >gi|227872290|ref|ZP_03990648.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] gi|227841862|gb|EEJ52134.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] Length = 868 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 78/605 (12%), Positives = 166/605 (27%), Gaps = 139/605 (22%) Query: 82 ACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGET 138 ++ + A A + + GK+ + + Sbjct: 386 YHLWEELLEGEIHDLSLGAYLLNPLKDSYAYDDLARDY---MDLVLPGKKELQNTAEEGL 442 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198 + N D E+++ +E + + G Sbjct: 443 YSAFVSWQAKNR-------IFQELKDTE-QWELYRDVEEPL------VPVLYRMEKAGIL 488 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256 VD + + + L +E+ ++ + ++L LF + L T+ Sbjct: 489 VDKEALLSYGEELKKNIAMLQEEIYAMAG-EEFNINSPQQLGGILFEKMQLPGGKKTKTG 547 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL ++ P ++ R S+ L + D R+ G+ Q + + Sbjct: 548 YSTAVDVLEKLQEDYPIVGKILEYR-TYSKLNSTYAEGLSNYVGEDQRIHGSFQQMV-TA 605 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P + RS I EG Sbjct: 606 TGRLSSTEPNLQNIPIRTEMGR-------------------------VFRSVFIPKEGSV 640 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 + AD + +E R+LA ++ ++ ++A+ D++ T + F+V +VT + R K + Sbjct: 641 FLDADYSQVELRLLASLSKDEKLIEAYRKDADIHRVTASEVFHVPLEEVTPELRRNAKAV 700 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ + Sbjct: 701 NF--------------GIVYGIS------------------------------AFGLSEG 716 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + + + + +V E + + Sbjct: 717 LSISRQEAKEYIERYFTSYPKVKEYLDGEVAFARE------------------------- 751 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + + GR ++ + + + R +Q + DI+ + M+ Sbjct: 752 -HSFVKTLFGRRRPLPEIHASNFMRRSFS---ERVAMNAP------IQGTAADIIKKAMV 801 Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGY 668 + IVL +HDE++ E + + M S +PL E Sbjct: 802 IVDQKLSEKNCQSRIVLQIHDELLLEVVKEELETVKDILVSAMEHVVS--LPVPLIVEAT 859 Query: 669 ESKRY 673 + Sbjct: 860 VGNNW 864 >gi|163942320|ref|YP_001647204.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4] gi|163864517|gb|ABY45576.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4] Length = 877 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 96/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L N ++ ++ LK Sbjct: 329 HKADIQGFG--IQNENGCYFIPADVALKSDAFKEWLANGEMRKHTFDAKRAIVALKW-KG 385 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +DI L+ A K K ++ K + KG Sbjct: 386 VDIQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPGLE 442 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y + + ++ E + E L + + +G VD Sbjct: 443 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF + L + T+ +T Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFEDLNLPVIKKTKTGYSTSAD 560 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 561 VLDKLMDRHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 619 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 620 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 654 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A + ++AF+ D++ T F V +VT + R K + + Sbjct: 655 YSQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 715 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTL-- 767 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 768 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 787 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 788 --------------AERTAMNTPIQG---SAADIIKKAMIIM----AD-------RLEEE 819 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 820 GLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|55821733|ref|YP_140175.1| DNA polymerase I [Streptococcus thermophilus LMG 18311] gi|55737718|gb|AAV61360.1| DNA-directed DNA polymerase I [Streptococcus thermophilus LMG 18311] Length = 879 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 98/669 (14%), Positives = 194/669 (28%), Gaps = 155/669 (23%) Query: 28 VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ F + + D + + + AL + V N ++ Sbjct: 325 FEILGDNYHTEPIIGFAWGNEKQIYASTDTDLLKSEAFQAAL-SKAV-----NI-YDFKR 377 Query: 79 --VLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIA 131 VL + +D+P + S + + L L + ++ GK Sbjct: 378 SKVLLSHLGIDLPTAN-FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVVYGKGAKR 436 Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191 + E + + A + E + E L E L + Sbjct: 437 AIPEKEVLLSHLAKKVKVLQVAKPVMLEKLAE--------HGQSELLFDMELPLANVLAK 488 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G VD + + KL Q++ + + ++L LF + GL L Sbjct: 489 MEMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAG-EEFNINSPKQLGVILFEKMGLPL 547 Query: 252 --EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T+ +T VL + P ++ R ++ + L + + DG++ Sbjct: 548 EYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQ-ITKLQSTYVLGLQDYILEDGKIHT 606 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 ++TGR S QN+P +R Sbjct: 607 RYMQD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRK 640 Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424 + S + L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P V Sbjct: 641 AFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDV 700 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T + R K + G++ ++ Sbjct: 701 TPNDRRNAKAVNF--------------GIVYGISDFGLSN-------------------- 726 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + +++ + + + + + Sbjct: 727 ----------NLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKD-------------- 762 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 + R D+ + R +Q Sbjct: 763 ------------KGYVSTLFHRRRELPDINSRNF---NVRNFAERTAINSP------IQG 801 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSW 657 + DIL M+N KA ++L VHDEI+ E P + ++ M Sbjct: 802 SAADILKIAMINLDKALVEGGYKTKMLLQVHDEIILEVPRDELLAMKALVKETMEDAVEL 861 Query: 658 AKGLPLKAE 666 A +PL A+ Sbjct: 862 A--VPLIAD 868 >gi|55823653|ref|YP_142094.1| DNA polymerase I [Streptococcus thermophilus CNRZ1066] gi|55739638|gb|AAV63279.1| DNA-directed DNA polymerase I [Streptococcus thermophilus CNRZ1066] Length = 879 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 98/669 (14%), Positives = 195/669 (29%), Gaps = 155/669 (23%) Query: 28 VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ F + + D + + + AL + V N ++ Sbjct: 325 FEILGDNYHTEPIIGFAWGNEKQIYASTDTDLLKSEAFQAAL-SKAV-----NI-YDFKR 377 Query: 79 --VLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIA 131 VL + +D+P + S + + L L + ++ GK Sbjct: 378 SKVLLSHLGIDLPTAN-FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVVYGKGAKR 436 Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191 + E + + A + E + E L E L + Sbjct: 437 AIPEKEVLLSHLAKKVKVLQVAKPVMLEKLAE--------HGQSELLFDMELPLANVLAK 488 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G VD + + KL Q++ + + ++L LF + GL L Sbjct: 489 MEMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAG-EEFNINSPKQLGVILFEKMGLPL 547 Query: 252 --EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T+ +T VL + P ++ R ++ + L + + DG++ Sbjct: 548 EYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQ-ITKLQSTYVLGLQDYILEDGKIHT 606 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 ++TGR S QN+P +R Sbjct: 607 RYMQD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRK 640 Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424 + S + L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P V Sbjct: 641 AFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDV 700 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T + R K + G++ ++ Sbjct: 701 TPNDRRNAKAVNF--------------GIVYGISDFGLSN-------------------- 726 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + +++ + + + + + Sbjct: 727 ----------NLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKN-------------- 762 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 + R D+ + R +Q Sbjct: 763 ------------KGYVSTLFHRRRELPDINSRNF---NVRNFAERTAINSP------IQG 801 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSW 657 + DIL M+N KA ++L VHDEI+ E P + ++ M + Sbjct: 802 SAADILKIAMINLDKALVEGGYKTKMLLQVHDEIILEVPRDELLAMKALVKETMEAAVEL 861 Query: 658 AKGLPLKAE 666 A +PL A+ Sbjct: 862 A--VPLIAD 868 >gi|2281294|gb|AAB64184.1| DNA polymerase I (PolI) [Lactococcus lactis subsp. cremoris MG1363] Length = 877 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 98/675 (14%), Positives = 193/675 (28%), Gaps = 150/675 (22%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVAH 71 L G + E + AF + + D + + P+ Sbjct: 332 LETLGENYHREQ----IVAFAWGNSEKIYVSKNLDLLTEMKFPEN--------------- 372 Query: 72 NSYFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 ++ VL + N+++P+ + ++ K A + +E Sbjct: 373 --TYDFKKNRVLLSHLNIELPLVK-FDAMLAKYLISTTEDNKISTIARLFDVGHLATDEE 429 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 F KG D +H K + ++ LS E L + Sbjct: 430 ---IFGKGTKLALPDDEILFDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEV 486 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G V + + + L +E+ L + ++L LF + Sbjct: 487 LAKMEITGISVSQNTLEEIGAENEEKLASLTREIYDLAG-EEFNINSPKQLGVILFEKLQ 545 Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+ +T VL L+P ++ R ++ + L+ + DG++ Sbjct: 546 LPVGKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQ-INKEQSTYVKGLIPQIADDGKIH 604 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 ++TGR S QN+P + +R Sbjct: 605 TRYVQD-LTQTGRLSSVDPNLQNIPVRLEEGRK-------------------------IR 638 Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + S+ L+ +D + IE RVLA ++ ++ + AF+ G D++ +T R F + A+ Sbjct: 639 KAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGIEKAE-- 696 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 + A NF Sbjct: 697 -----------------------------------------DVTANDRRNAKAVNFGVVY 715 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + A + + + +++ + + + Sbjct: 716 GISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARD--------------- 760 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 + S R D+ R +Q Sbjct: 761 -----------KGFVETMSHRRRKIPDINARNF---NVRGFAERTAINSP------IQGS 800 Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWA 658 + DIL M+N KA ++L VHDEI+ + P + E +++ M A Sbjct: 801 AADILKIAMINLDKALTERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEAIELA 860 Query: 659 KGLPLKAEGYESKRY 673 +PLK + K + Sbjct: 861 --VPLKVDDNTGKTW 873 >gi|319940068|ref|ZP_08014422.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV] gi|319810782|gb|EFW07109.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV] Length = 881 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 107/664 (16%), Positives = 203/664 (30%), Gaps = 142/664 (21%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKAC 83 ++ FA+ + D + Q KE LENT V ++ VL + Sbjct: 337 EMVGFAW----GNAQQIYASQDINLLQQPAFKEFLENTA-LKV-----YDFKRSKVLLSR 386 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 +++ + + + V A K+ E + + + K Sbjct: 387 LGIELS-RPAFDSRLAKYLLSTVDNNEIVTIAGLYGKTKLAEDEAVYGKGAK--RALPEK 443 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 + + E K + R+ +L L EQ L ++ + G V+ Sbjct: 444 AILLSHLARKVTVLIETEKPMTDLLRQ-HDQLNLLYEMEQPLAFVLAKMEIAGIKVERET 502 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE---TT 258 T+ + T+L QE+ L + ++L LF + GL T+ +T Sbjct: 503 LQTMQAENERILTRLTQEIYDLAG-EEFNINSPKQLGGILFEKLGLPTSFTKKTKTGYST 561 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + P ++ + R ++ + L + + +DG++ ++TGR Sbjct: 562 AVDVLERLAPIAPIVEKILDYRQ-IAKIQSTYVMGLQDWILADGKIHTRYLQD-LTQTGR 619 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377 S QN+P +R + E L+ Sbjct: 620 LSSVDPNLQNIPIRLEQGR-------------------------LIRKAFVPEWEDSVLL 654 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVME 436 +D + IE RVLA ++G++ ++AF G D++ +T R FN+ P VT + R K + Sbjct: 655 SSDYSQIELRVLAHISGDKHLIEAFRHGADIHTSTAMRVFNIERPEDVTPNDRRNAKAVN 714 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + G++ A+ Sbjct: 715 FGVV--------------YGISDFGLAN------------------------------NL 730 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + +++ + + + Sbjct: 731 GISRKEAKSYIDTYFERYPGIKNYMENVVREARD-------------------------- 764 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 + R D+ + R +Q + DIL M+ Sbjct: 765 KGYVETLFHRRREIPDINSRNF---NVRGFAERTAINSP------IQGSAADILKIAMIR 815 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYE 669 +A ++L VHDEIV E P+ + L +M S +PLKA+ Sbjct: 816 LGQALIDGNFKTRMLLQVHDEIVLEVPENELTAIKALVKDIMESAIE--LSVPLKADESA 873 Query: 670 SKRY 673 K + Sbjct: 874 GKTW 877 >gi|229135422|ref|ZP_04264209.1| DNA polymerase I [Bacillus cereus BDRD-ST196] gi|228647983|gb|EEL04031.1| DNA polymerase I [Bacillus cereus BDRD-ST196] Length = 891 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 96/656 (14%), Positives = 186/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L N ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIPADVALKSDAFKEWLANGEMRKHTFDAKRAIVALKW-KG 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +DI L+ A K K ++ K + KG Sbjct: 400 VDIQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPGLE 456 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y + + ++ E + E L + + +G VD Sbjct: 457 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTDRL 515 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 575 VLDKLMDRHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A + ++AF+ D++ T F V +VT + R K + + Sbjct: 669 YSQIELRVLAHIAKDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV 728 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTL-- 781 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 802 --------------AERTAMNTPIQG---SAADIIKKAMIIM----AD-------RLEEE 833 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|241896083|ref|ZP_04783379.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313] gi|241870683|gb|EER74434.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313] Length = 931 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 88/657 (13%), Positives = 191/657 (29%), Gaps = 130/657 (19%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 F + + ++ Q +K LE++ + N+ E V + + Sbjct: 385 IGFVIGNQADGYFASRDIDLLTQNSPVKRILEDSTILKNVFNAK-ELYVSLKRLGIALKG 443 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 L+++ +G AL + + + D + H Sbjct: 444 VS-FDLLLVSYLLDTNDNNNDLG-ALAHDNDYYAVMTDEEVYGKGAKFAIPAADADFFEH 501 Query: 151 REAWRLFGEYCKGDVTVTREI--FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + + + + ++ + E L + + G VD + Sbjct: 502 LGRKAMAINLLRE--PLLDRLLSHEQTKLYEDIELPLTKILADMESTGITVDSEQLLQMR 559 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 + ++L+Q++ + + ++L LF E T+ +T VL Sbjct: 560 SKLTERLSELEQKIYQQAGH-EFNIQSPKQLGVVLFEEMKYTPIKKTKTGYSTSVEVLEK 618 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + P + R ++ + L+ ++ T ++TGR S Sbjct: 619 MGDV-PIVESILAYRQ-VAKIQSTYVEGLLRVIHGSDSKVHTRYLQTLTQTGRLSSVDPN 676 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGI 384 QN+P +R + S +++ AD + I Sbjct: 677 LQNIPVRIEEGR-------------------------QIRKAFVPSHSDWQILSADYSQI 711 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV-TKDQRAIGKVMELALGYQG 443 E RVLA + G++ AF GED++ T R F + + + R K + + Y Sbjct: 712 ELRVLAHITGDKNLQAAFINGEDIHAATARRIFGIKDDEPVEGNVRRQAKAVNFGIVYGI 771 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + + ++ + +++ D + + + + E + Sbjct: 772 S-----DFGLSKNIGVSRKEAKAIIETYFDQYPDVKKWSDDIIASARETGYVETI----- 821 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 A +RR +P + K+ Sbjct: 822 ------------------------------------AHRRRYLPDIKAKRFNARSF---- 841 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620 R+ +N+ +Q + DI+ M+ A Sbjct: 842 -----------AERTAMNS------------------PIQGSAADIIKIAMIKVQAAIEQ 872 Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P ++ + L +M S +PL + + Sbjct: 873 AGMQAHMLLQVHDELIFEAPASEMADLEKLVTKVMDSAVK--LDVPLLVSSHVGASW 927 >gi|229013790|ref|ZP_04170918.1| DNA polymerase I [Bacillus mycoides DSM 2048] gi|228747459|gb|EEL97334.1| DNA polymerase I [Bacillus mycoides DSM 2048] Length = 891 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 96/656 (14%), Positives = 185/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L N ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIPADVALKSDAFKEWLANGEMRKHTFDAKRAIVALKW-KG 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +DI L+ A K K ++ K + KG Sbjct: 400 VDIQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y + + ++ E + E L + + +G VD Sbjct: 457 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 575 VLDKLMDRHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A + ++AF D++ T F V +VT + R K + + Sbjct: 669 YSQIELRVLAHIANDPGLVEAFRHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV 728 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTL-- 781 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 802 --------------AERTAMNTPIQG---SAADIIKKAMIIM----AD-------RLEEE 833 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|229175295|ref|ZP_04302810.1| DNA polymerase I [Bacillus cereus MM3] gi|228608127|gb|EEK65434.1| DNA polymerase I [Bacillus cereus MM3] Length = 891 Score = 290 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 94/656 (14%), Positives = 186/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L + ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIRTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K K ++ K + KG Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V + ++ E + E L + + +G VD Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 575 VLEKLMDRHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMSDIVKDAKQKGYVATL-- 781 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M +PLK + + Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIGKLEKLVPEVMEHAIELV--VPLKVDYSYGPTW 887 >gi|303229623|ref|ZP_07316411.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a] gi|302515748|gb|EFL57702.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a] Length = 884 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 85/595 (14%), Positives = 165/595 (27%), Gaps = 137/595 (23%) Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + R ++A IA + Sbjct: 412 VARIHDVSLMAYLLDPTRTN------YGYLYLTERFSVPSIATGSVDVECVSMVKALLAM 465 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 A + D +++ ++ E L + + G +D Sbjct: 466 DDAAVK-----ALQD-ESLWDLY------NNIELPLIHTLLVMEKNGIYIDPVKLEETTI 513 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266 E + QE+ L + ++L LF + L + T+ +T VL Sbjct: 514 KFKAELEAVQQEIYELAG-ETFNINSPKQLGIILFEKMNLPVIKKTKTGYSTDAEVLDML 572 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + +P ++ R ++ L +N + T + TGR S Sbjct: 573 RHESPIVEKILAYR-SVAKLVSTYCEGLAVLINPETHRIHTTFNQMVTATGRLSSSDPNL 631 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIE 385 QN+P + E +R+ EG LV AD + IE Sbjct: 632 QNIPVRTEKGRE-------------------------IRALFYPGEGFDTLVSADYSQIE 666 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA ++G++ +KAF G+D++ T A + +VT ++R+ K + + Sbjct: 667 LRILAHLSGDEALIKAFNDGKDIHRFTAAEVLGKSQDEVTSEERSHAKAVNFGII----- 721 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ + + + Sbjct: 722 ---------YGISDFGLS------------------------------RDLGITRQEAKN 742 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + + ++ +V E + E GK G Sbjct: 743 YIELYFSRYPKVKEYM---DNMVIEAHETGKVRTM-----------------------FG 776 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620 R D+ + R +Q + DI+ M Sbjct: 777 RMRELPDINSRNF---NRRSFAERTAMNTP------IQGTAADIIKLAMNKVESILEEKA 827 Query: 621 -GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + + +L M S +PL + + ++ + Sbjct: 828 FKSRLLLQVHDELVLEVVNEELDAIQTLLKETMESIVE--LHVPLIVDVHNAENW 880 >gi|108799977|ref|YP_640174.1| DNA polymerase I [Mycobacterium sp. MCS] gi|119869089|ref|YP_939041.1| DNA polymerase I [Mycobacterium sp. KMS] gi|108770396|gb|ABG09118.1| DNA polymerase I [Mycobacterium sp. MCS] gi|119695178|gb|ABL92251.1| DNA polymerase I [Mycobacterium sp. KMS] Length = 920 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 101/678 (14%), Positives = 196/678 (28%), Gaps = 139/678 (20%) Query: 16 LTKCGIC-KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNS 73 L G Y D + D D + L L + H + Sbjct: 357 LAVVGTHLAYDADATALAIVAA--DGDGRYIDTTSLDPDDEAALASWLADPGPPKALHEA 414 Query: 74 YFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKE 128 L + T + A +L + L+ + ++ Sbjct: 415 KLAMHDLA---GRGWKLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLRRELRADNPAQQ 471 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 ++ + + + A + D + R L E + + Sbjct: 472 QLSLLDDSDGGDDQAVQTLILRAVAVLDLAD--ALDEELARI--DSSSLLGRMELPVQRV 527 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G VD+ L + ++ + + ++L+ LF E Sbjct: 528 LAEMEHTGIAVDIDQLRQLQSEFADLIRDAAEAAYAVIGKQI-NLGSPKQLQAVLFDELE 586 Query: 249 LHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 + T+T T L S P + +R A+R V ++ L+ ++ SDGR Sbjct: 587 MPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHR-DATRLKVT-VDGLLNSVASDGR 644 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + T A+ TGR S QN+P + + Sbjct: 645 IHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEAGRR------------------------- 678 Query: 364 VRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + +G ++ AD + IE R++A ++ + ++AF TGEDL+ +R+F+V Sbjct: 679 IRDAFVVGDGYTEVMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFDVPID 738 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT D R K M L GL+ A +K Sbjct: 739 EVTPDLRRRVKAMSYGL--------------AYGLSAYGLAAQLKI-------------- 770 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + + + + + ++ + Sbjct: 771 ----------------STEEAKVQMDQYFARFGGIRDYLRDVVDQARK------------ 802 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 + GR ++ ++ R + Sbjct: 803 --------------DGYTSTVFGRRRYLPELDSSN---RNVREAAERAALNAP------I 839 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNP 655 Q + DI+ M++ +A ++L VHDE++ E D + L M S Sbjct: 840 QGSAADIIKVAMIDVDQAIKDAGLSSRMLLQVHDELLFEVADGERDTLEKLVRDKMGSA- 898 Query: 656 SWAKGLPLKAEGYESKRY 673 +A +PL+ + + Sbjct: 899 -YALDVPLEVSVGYGRSW 915 >gi|228941766|ref|ZP_04104313.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974690|ref|ZP_04135256.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981284|ref|ZP_04141584.1| DNA polymerase I [Bacillus thuringiensis Bt407] gi|228778484|gb|EEM26751.1| DNA polymerase I [Bacillus thuringiensis Bt407] gi|228785093|gb|EEM33106.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817978|gb|EEM64056.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 891 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 95/656 (14%), Positives = 186/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + K L N ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIQKDIALASDAFKAWLANGEMRKHTFDAKRAIVALKWN-G 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K K ++ K + KG Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V + ++ E + E L + + +G VD Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 516 RNMGEELVGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 575 VLDKLMDRHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|326942370|gb|AEA18266.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43] Length = 877 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 95/656 (14%), Positives = 186/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + K L N ++ ++ LK Sbjct: 329 HKADIQGFG--IQNENGCYFIQKDIALASDAFKAWLANGEMRKHTFDAKRAIVALKWN-G 385 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +D+ L+ A K K ++ K + KG Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 442 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y V + ++ E + E L + + +G VD Sbjct: 443 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 502 RNMGEELVGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 561 VLDKLMDRHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 619 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 620 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 654 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 655 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 715 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 767 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 768 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 787 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 788 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 819 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 820 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|229169313|ref|ZP_04297023.1| DNA polymerase I [Bacillus cereus AH621] gi|228614076|gb|EEK71191.1| DNA polymerase I [Bacillus cereus AH621] Length = 891 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 96/656 (14%), Positives = 186/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L N ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFIPADVALKSDAFKEWLANGEMRKHTFDAKRAIVALKW-KG 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +DI L+ A K K ++ K + KG Sbjct: 400 VDIQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y + + ++ E + E L + + +G VD Sbjct: 457 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 575 VLDKLMDRHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A + ++AF+ D++ T F V +VT + R K + + Sbjct: 669 YSQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV 728 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTL-- 781 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 802 --------------AERTAMNTPIQG---SAADIIKKAMIIM----AD-------RLEEE 833 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|41057712|ref|NP_958166.1| gp61 [Burkholderia phage Bcep43] gi|40737699|gb|AAR89352.1| gp61 [Burkholderia phage Bcep43] Length = 656 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 172/703 (24%), Positives = 280/703 (39%), Gaps = 84/703 (11%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60 LF+DFE S DLT+ G+ +Y +D + F F +LW + V+P+ + Sbjct: 6 LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMATADLW--EYGNVVPKQIVMH 63 Query: 61 LENTDVTIVAHNSYFER----TVLKACFNL----DIPIHRWICTLVLARSNGLPSALKAV 112 L + VAHN+ F+ +L+ +I I + C+ AR NGLP +L Sbjct: 64 LTSGG-LFVAHNAPFDFWIWNLILRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGA 122 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 EAL L QK EG + + D +H E + +Y D ++ Sbjct: 123 CEALGLPVQKDTEGAKWMKEIAANP------DWTPTDHPEHFSRTYKYALIDTDAMVGVW 176 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + PL +EQ + +D IN RG VDV A + + +LD E+ LT G + + Sbjct: 177 ESTVPLPPREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 236 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + K+K + G ++D T +++ ++ L Q+ R+ ASR+ K + Sbjct: 237 VTEVAKIKEYA-ATLGEDMDDAGRETLKKI-AARDNLPDSLRQLIELRLDASRAP--KKS 292 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL----PRPSRSHEELDQIITHLPT 348 + + GRL+ + GA + Q L PRP + + + I+ Sbjct: 293 AAILRAHVGGRLQHHTIYHGALSGRSTARGAGGAQTLNTARPRPGKKTADCEAILDACLR 352 Query: 349 SITSD------PDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + L ++D R A G LV ADL+GIEAR+ W+A + KL+A Sbjct: 353 GDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPKLEA 412 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE G D Y +++ VTKDQR +GK +LALG+ G AF MA+ G++L Sbjct: 413 FEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGADGAFASMAANYGVHLPP 472 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + WR W Sbjct: 473 EQVS---------------------------------------EIVYNWRAGRPAFERWW 493 Query: 522 NELHQAFEQTIE--NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG----- 574 + + ++ + ++ R + + KD L + LPSGR++ Y + Sbjct: 494 SLCEYSALMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLHLEP 553 Query: 575 NNRSYLNTTTRQLTREYTYGGKLT-ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + + T K+ N Q +SRD+ +++ + +IV ++DE + Sbjct: 554 GANVPIAIYDKPEGYVETLDRKILSNNQTQGLSRDLFWSVLLDVDRVE-EIVHHIYDEAL 612 Query: 634 CET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + L M +W GLPL AEG+ R+RK Sbjct: 613 LEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 655 >gi|303232052|ref|ZP_07318755.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6] gi|302513158|gb|EFL55197.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6] Length = 884 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 83/595 (13%), Positives = 167/595 (28%), Gaps = 137/595 (23%) Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + R ++A IA + Sbjct: 412 VARIHDVSLMAYLLDPTRTN------YGYLYLTERFSVPSIATGSVDVECVSMVKALLAM 465 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 A + D +++ ++ E L + + G +D Sbjct: 466 DDAAVK-----ALQD-ESLWDLY------NNIELPLIHTLLVMEKNGIYIDPVKLEETTI 513 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266 E + QE+ L + ++L LF + L + T+ +T VL Sbjct: 514 KFKAELEAVQQEIYELAG-ETFNINSPKQLGIILFEKMNLPVIKKTKTGYSTDAEVLDML 572 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + +P ++ R ++ L +N + T + TGR S Sbjct: 573 RHESPIVEKILAYR-SVAKLVSTYCEGLAVLINPETHRIHTTFNQMVTATGRLSSSDPNL 631 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIE 385 QN+P + E +R+ EG LV AD + IE Sbjct: 632 QNIPVRTEKGRE-------------------------IRALFYPGEGFDTLVSADYSQIE 666 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA ++G++ +KAF G+D++ T A + +VT ++R+ K + + Sbjct: 667 LRILAHLSGDEALIKAFNDGKDIHRFTAAEVLGKSQDEVTSEERSHAKAVNFGII----- 721 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ + + + Sbjct: 722 ---------YGISDFGLS------------------------------RDLGITRQEAKN 742 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + + ++ +V E + + +T + + G Sbjct: 743 YIELYFSRYPKVKEYMDNMVTEAHETGK--------------------------VRTMFG 776 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620 R D+ + R +Q + DI+ M Sbjct: 777 RMRELPDINSRNF---NRRSFAERTAMNTP------IQGTAADIIKLAMNKVESILEEKT 827 Query: 621 -GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + + +L M S +PL + + ++ + Sbjct: 828 FKSRLLLQVHDELVLEVVNEELDAIQTLLKETMESIVE--LHVPLIVDVHNAENW 880 >gi|291520593|emb|CBK75814.1| DNA polymerase I [Butyrivibrio fibrisolvens 16/4] Length = 901 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 105/678 (15%), Positives = 184/678 (27%), Gaps = 166/678 (24%) Query: 26 EDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSY------FE 76 ED + A D V DC + L E V + + FE Sbjct: 334 EDKLIKGAALSTGDATV-YVDCAGFITPDYLGHKLIEI-SKAGVKLCFWDLKNAMHILFE 391 Query: 77 R-------TVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG-EALKL--SSQKM 123 VL+ +I V A V E L + +Q Sbjct: 392 LMNQDEKAAVLEKGGKTEIFPTAV-DVAVAAYLLNPTKNAYTADDVASEILGIIIPAQAD 450 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS--- 180 GK + Y + V F+++ Sbjct: 451 LFGKTKLNAAL--------------EDDSMLEAVTTYACYNAYVAFAAFEKVIAEIKEEG 496 Query: 181 -------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 E L Y + +G +D + V +L+Q + S + Sbjct: 497 MLDIYENIEMPLVYTLFDMELQGIAMDKEALAEYGSRLSVRINELEQSIYSQAG-EEFNI 555 Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF + G+ T+ +T VL P + R ++ Sbjct: 556 NSPKQLGVILFEKMGIEGGKKTKTGYSTAADVLEELSATNPIICDILEYRQ-LAKLKSTY 614 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L ++ DGR+R T + TGR S QN+P E Sbjct: 615 ADGLAACVDEDGRIRSTFMQ-TVTATGRISSTEPNLQNIPIRMELGRE------------ 661 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R + + AD + IE RVLA M+G++ + AF+ G+D++ Sbjct: 662 -------------IRKVFYPKKDCVFLDADYSQIELRVLAHMSGDENLIDAFKAGQDIHR 708 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 +T + FN +VT QR K + G++ Sbjct: 709 STASLVFNTPFDEVTDLQRRRAKAVNF--------------GIVYGIS------------ 742 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 A + + + + ++ E L ++ Sbjct: 743 ------------------AFGLAKDIGVGRKEAQEYIDNYFVAYPKMHEFLEGLKSHAKE 784 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 G GR ++ ++ R Sbjct: 785 ---KGYVTTMY-----------------------GRRRPIPELASSNFMTRQF---GERV 815 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ M+N ++L VHDE++ ET +++ Sbjct: 816 AMNSP------IQGTAADIIKIAMVNVHDRLLKEGLKSKLLLQVHDELLVETLESERPQV 869 Query: 645 SM-LYHLMTSNPSWAKGL 661 + M + A L Sbjct: 870 EKLIAEEMENAAKLAVDL 887 >gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501] gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501] Length = 872 Score = 290 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 90/669 (13%), Positives = 179/669 (26%), Gaps = 162/669 (24%) Query: 29 CVILFAFGFDDHPVELWDCVHDP--VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 V D D + L+ E+ ++ ++ N+ E + + Sbjct: 337 KVEGLTVA-SDEEACYIDTSDLDLAELIDKLQPYFEDYELNKLSLNTK-ENLIYLKEQGV 394 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 ++ L+ K + E + Sbjct: 395 EVKGIS-FDPLLADYLLRPS---------------------------AKEQDLESILTDQ 426 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRG 196 E E V + ++ +L E L + + G Sbjct: 427 LQMELEKTESEAETEVQQVRILFKLQDKLTDKLADKGLMELFIDVELPLIPILAQMELNG 486 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + L+ ++ + L L + ++L LF + GL + T+ Sbjct: 487 IAVDQDMIQELSNKLEEKLDSLRSRAYELAG-EEFNLNSPKQLGEILFEKLGLPVIKRTK 545 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLG 312 +T VL + + R + + ++ L + +N R+ + L Sbjct: 546 TGYSTSASVLEKLEDKHEIVPLILEYR-KYQKLKSTYVDPLPDLINPKTERIHTSFNQLV 604 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P + +R +A E Sbjct: 605 -TATGRLSSTEPNLQNIPIRTEEGRR-------------------------IRKVFVAEE 638 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 K+L+ D + IE RVLA ++ ++ + A+ G+D++ T A F + ++V+ QR Sbjct: 639 RKELLAVDYSQIELRVLAHISQDENLIAAYREGQDIHTKTAAEVFGLEASEVSYQQRRRA 698 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y +N++ N + + + + E Sbjct: 699 KAINFGIAYGISP-----WGLAKDINVSKQEAEDYINQYLNRYPKVKEYMDHQIKQAKEE 753 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 +RR +P + Sbjct: 754 GYVTTI-----------------------------------------LNRRRYLPEINSS 772 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 R +Q + DI+ Sbjct: 773 NYHRRSFGE---------------------------RMAINTP------IQGSAADIMKL 799 Query: 613 GMMN----ATKA--GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKA 665 M+ + I+L VHDE++ E P + + M +PLK Sbjct: 800 AMLESARVLDERELDTKILLQVHDELIFEVPPEELEEVQQVIKAEMEDVIE--LDVPLKV 857 Query: 666 EGYESKRYR 674 + +R Sbjct: 858 DLKVGSNWR 866 >gi|315924217|ref|ZP_07920443.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC 23263] gi|315622619|gb|EFV02574.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC 23263] Length = 887 Score = 290 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 89/649 (13%), Positives = 184/649 (28%), Gaps = 133/649 (20%) Query: 43 ELWDCVHDPVMPQVLKEALEN----TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 + + L AL + + IV H+ + +A + + T V Sbjct: 350 YYVPETA---LVEALLGALNDLPNADALGIVGHDLKALTHIFEAQGAQLVKMD--FDTYV 404 Query: 99 LARSNGLPSALKAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 A + A K Q + +EL+ + + + Sbjct: 405 AAYLLEPADNRYDLKSLAAKYLDQTIVGEEELLGKGRTRRALAEIAAPERAAFIVGECAA 464 Query: 158 GEYCKGDVTVTREIFKRLEPLSSKE--QELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 + ++ + ++ L + ++ G+ +D L+ + Sbjct: 465 IH--GLHAELAHQLEEMEMTALYQKIELPLIPVLASMESIGFKIDQEQLKNLSAHFEARI 522 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272 L +++ + ++L LF E GL T+ +T VL + Sbjct: 523 ETLTRQIYEEAGQR-FNINSTKQLGMILFEEMGLPPIKKTKTGYSTSVEVLEQLRPYNTI 581 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + R ++ L++ ++ + + + TGR S QN+P Sbjct: 582 VDDILEYR-TVTKLDSTYGRGLIKLVDPETEKIYSHFNQTVTATGRISSSDPNLQNIPVR 640 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391 + E +R + S LV AD + IE RVLA Sbjct: 641 TDLGRE-------------------------IRRVFVPSSPMCVLVDADYSQIELRVLAH 675 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 + ++ L+AF +D++ T + F V VT++QR+ K + Sbjct: 676 LTQDENLLEAFAKNQDIHARTASEIFQVPLEDVTREQRSHAKAIN--------------F 721 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G + E + + Sbjct: 722 GLIYG------------------------------KQAFSLGKELGIGRNQAQDYIDMYF 751 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ +V + + + G GR Sbjct: 752 SRYPKVYAYMKAIREEAKT---KGYVTTLY-----------------------GRRRYIP 785 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IV 625 ++ + + + R +Q + DI+ M+ ++ Sbjct: 786 EIQSRNRMIVQS---GERMA------LNTPIQGSAADIMKIAMVKVYHRLAKESFRSHLL 836 Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 L +HDE++ E P+T+ E +L M + S +PL + K + Sbjct: 837 LQIHDELIIEAPETESEKILRLLTEEMENAVS--LSVPLVVDARIGKSW 883 >gi|317055011|ref|YP_004103478.1| DNA polymerase I [Ruminococcus albus 7] gi|315447280|gb|ADU20844.1| DNA polymerase I [Ruminococcus albus 7] Length = 856 Score = 290 bits (741), Expect = 8e-76, Method: Composition-based stats. Identities = 83/506 (16%), Positives = 163/506 (32%), Gaps = 119/506 (23%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E L + ++ G D + + + L +++ L G + + Sbjct: 455 FNEVEMPLCEVLASMEHYGVRADTNGIREFGKWLKKDIEALTKQIYDLAGG-EFNIASPK 513 Query: 238 KLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L L+ + GL + T++ T VL P V R ++ + ++ L Sbjct: 514 QLGEVLYEKLGLPAKKKTKSGYSTNAEVLEELADKHPIVRLVLEYR-TLTKLSSTYVDGL 572 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ + SDGR+ + +RTGR S QN+P Sbjct: 573 LKEVESDGRVHSVFKQ-TETRTGRISSTEPNMQNIPVRKEIGR----------------- 614 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R +A EG L+ AD + IE RVLA + G++ K FE G D++ T + Sbjct: 615 --------NMRKFFVAGEGCTLLDADYSQIELRVLAAVCGDENMRKTFEEGTDIHAMTAS 666 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 + F + V + R+ K + + G+ + + + Sbjct: 667 QVFGIPADMVLPEMRSAAKAVNFGII--------------YGIGAFSLSKDI-------- 704 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 ++ K + +VS+ + E I+N Sbjct: 705 ----------------------GVSVAEAKQYIKNYLDNFPKVSQFM---DKTVEDGIKN 739 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 G GR ++ + + R Sbjct: 740 GYVTTI-----------------------FGRRRYIPELSATNKVMQAFGK---RAAMNA 773 Query: 595 GKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCET-PDTDEFNASML 647 +Q + DI+ M+ K ++L VHDE++ E P+ + +++L Sbjct: 774 P------IQGAAADIIKIAMVKVYQRLKEEKLDARLILQVHDELIIEVTPEDKDKASAVL 827 Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRY 673 M + A +P++ E + + Sbjct: 828 KEEMENAVKLA--VPMEVSVGEGESW 851 >gi|229019809|ref|ZP_04176611.1| DNA polymerase I [Bacillus cereus AH1273] gi|229026035|ref|ZP_04182418.1| DNA polymerase I [Bacillus cereus AH1272] gi|228735251|gb|EEL85863.1| DNA polymerase I [Bacillus cereus AH1272] gi|228741480|gb|EEL91678.1| DNA polymerase I [Bacillus cereus AH1273] Length = 891 Score = 290 bits (741), Expect = 8e-76, Method: Composition-based stats. Identities = 93/658 (14%), Positives = 181/658 (27%), Gaps = 123/658 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + K L N ++ ++ LK Sbjct: 343 HKADIQGFG--IQNENGCYFISADIALKSDAFKAWLANAEMRKHTFDAKRAIVALKW-KG 399 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +DI L+ A K KM+E + + Sbjct: 400 VDIQGID-FDLLIAAYLLDPADTDKDFRAV-----AKMKETHAVKSDEEVYGKGAKRAVP 453 Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E Y + + ++ E + E L + + +G VD Sbjct: 454 ELDVVAEHVARKVHVLYDVKQTFIEELKKNEQYELFTELELPLARVLADMEVKGVKVDTE 513 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + R + + L++ ++ D T ++TGR Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + EG + Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A + ++AF+ D++ T F V +VT + R K + Sbjct: 667 ADYSQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFG 726 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L + A E + + + + ++ + Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTL 781 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P + + Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +NT + K I+ D Sbjct: 801 F---------------AERTAMNTPIQG---SAADIIKKAMIIM----AD-------RLE 831 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|229105215|ref|ZP_04235864.1| DNA polymerase I [Bacillus cereus Rock3-28] gi|228678141|gb|EEL32369.1| DNA polymerase I [Bacillus cereus Rock3-28] Length = 890 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 88/676 (13%), Positives = 179/676 (26%), Gaps = 159/676 (23%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + + K L N ++ ++ LK Sbjct: 342 HKADIQGFG--IQNENGCYFIQTDIALASEAFKAWLANGEMRKHTFDAKRAIVALKW-KG 398 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +DI L+ A + K + ++ E +Y + Sbjct: 399 IDIQGID-FDLLIAAYLLDPA------------DTDKDFRTVAKMKETHAVKSDEEVYGK 445 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDR 195 + E+ V V ++ + E L + + + Sbjct: 446 GAKRAVPELEVVAEHVARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVK 505 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G VD + + + +++QE+ L + ++L LF L + T Sbjct: 506 GVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKT 564 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T VL + + R + + L++ ++ D T Sbjct: 565 KTGYSTSADVLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQV 623 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-S 371 ++TGR S QN+P + +R + Sbjct: 624 LTQTGRLSSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSE 658 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 EG + AD + IE RVLA +A ++ ++AF+ D++ T F V +VT + R Sbjct: 659 EGWIIYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQ 718 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + G++ + Sbjct: 719 AKAVNF--------------GIVYGISDYGLSQ--------------------------- 737 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 A + + + V E +++ + + G Sbjct: 738 ---NLGITRKAAAEFIEKYLESFPGVQEYMDDI---VKDAKQKGYVATLLN--------- 782 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR---- 607 R ++ + R +Q + Sbjct: 783 --------------RRRYIPEITSRNF---NLRSFAERTAMNTP------IQGSAADIIK 819 Query: 608 -------DILAEGMMNATKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657 D + G ++L VHDE++ E P + L +M Sbjct: 820 IAMIIMAD-------RLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIEL 872 Query: 658 AKGLPLKAEGYESKRY 673 A +PLK + + Sbjct: 873 A--VPLKVDYSYGPTW 886 >gi|160938046|ref|ZP_02085403.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC BAA-613] gi|158439040|gb|EDP16795.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC BAA-613] Length = 930 Score = 289 bits (740), Expect = 9e-76, Method: Composition-based stats. Identities = 99/678 (14%), Positives = 181/678 (26%), Gaps = 152/678 (22%) Query: 30 VILFAFGFDDHPVELWDCVH---DPVMPQVLKEAL-ENTDVTIVAHNSY----------- 74 V A + + + + L+ N + A NS Sbjct: 367 VTGLALCLGEEDIYCLAAGEQITGEYLLEQLRALCGRNQEQDNQAQNSQGQDNPGVRELW 426 Query: 75 -FERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGE-ALKLSSQK---MEEG 126 + + A L V A + L L+ + Sbjct: 427 ALDLKSMLAYLELK-DTDPVYDAGVAGYLLNPLKDTYAYDDLARDYLGLTVPSRADLLAK 485 Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV-TREIFKRLEPLSSKEQEL 185 ++L +GE + W+ ++ E L Sbjct: 486 EDLGDALWRGEKNAVDCVCYMGYTA--WKAAAPLAGQLKDTGMYSLYT------DIEMPL 537 Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 Y + G V+ A + V KL+QE+ T + ++L LF Sbjct: 538 IYSLFHMEQEGVKVERAELKEYGDRLKVGIAKLEQEIYQETGH-EFNINSPKQLGEILFE 596 Query: 246 ETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 + L T+ +T VL P ++ + R ++ L + DG Sbjct: 597 QMELPGGKKTKTGYSTAADVLEKLAPDYPVVQKILDYRQ-LTKLNSTYAEGLAAYIGEDG 655 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 R+ G + TGR S QN+P E Sbjct: 656 RIHGKFNQ-TITATGRISSTEPNLQNIPVRMALGRE------------------------ 690 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG V AD + IE R+LA M+G++ ++A+ + +D++ T ++ F+V Sbjct: 691 -IRKVFVPKEGCVFVDADYSQIELRILAHMSGDERLIEAYRSAQDIHAITASQVFHVPLD 749 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT QR K + G++ Sbjct: 750 EVTPLQRRNAKAVNF--------------GIVYGIS------------------------ 771 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + + + + V + L +Q E G Sbjct: 772 ------AFGLSEGLSISRKEAVEYIDKYFETYPGVKTFLDGL---VKQGKEQGYVTTLY- 821 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 GR ++ + R + Sbjct: 822 ----------------------GRRRPIPELKSANFMQRQF---GERVAMNSP------I 850 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNP 655 Q + D++ M+ + IVL +HDE++ ET + + M Sbjct: 851 QGTAADVMKIAMIAVDRELKKRGLKSRIVLQIHDELLIETARDEIEAVKEILTDKMKHAA 910 Query: 656 SWAKGLPLKAEGYESKRY 673 + L+ E K + Sbjct: 911 D--LRVSLEVEAEVGKSW 926 >gi|169348423|ref|ZP_02866361.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552] gi|169293892|gb|EDS76025.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552] Length = 873 Score = 289 bits (740), Expect = 9e-76, Method: Composition-based stats. Identities = 96/662 (14%), Positives = 192/662 (29%), Gaps = 143/662 (21%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL--KACFNLD 87 ++ FA +++ D + Q + + + + ++ + L+ Sbjct: 333 IVGFAI-YNNSEAYYIDIENAIKC-QNFQNFINDESIEKYGYDIK---KCINAAKWHGLE 387 Query: 88 IPIHRWICTLVLARSNGLPSALKA----VGEALKLSSQKMEEGKELIARFCKGETHECLY 143 I + + + +LK V E +E + KG + Sbjct: 388 IK-NYVFDLQLASYILNP--SLKDEIRSVCEYYDYYDVLYDE-----EVYGKGAKKKIPE 439 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDV 201 +H Y D + ++ + + E + + ++ +G +D Sbjct: 440 TTAIADHLIKQAKAI-YVLKDKAIE-KLKQENQFDLYKDVEMPVAKILASMEYQGAKIDK 497 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 + L E L++E+ L + ++L LF + GL T+ +T Sbjct: 498 DVLKDLENQFGKEIEVLEKEIHQL-ANKNFNIASPKQLGEVLFEDLGLPNGKKTKTGYST 556 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 +L+ K + P +V R S+ + L E + DG++ ++TGR Sbjct: 557 SVDILNKLKDVHPIINKVLQYR-TLSKLYSTYIIGLQEQIFVDGKIHTIYNQA-LTQTGR 614 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378 S QN+P + + +R I LV Sbjct: 615 LSSTDPNLQNIPVKTAEGK-------------------------LIRKAFIPEYDY-LVS 648 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 D + IE RVLA +A + +KAF +D++ T + F V +V R K + Sbjct: 649 FDYSQIELRVLAHLANVKSLIKAFNEDKDIHRHTASEIFGVDEDEVDSTMRRNAKAVNF- 707 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ A V Sbjct: 708 -------------GIIYGMSDFGLAEQV------------------------------GV 724 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 K + + + + E +NG Sbjct: 725 PVNEARNFIKRYFENYPEIKTYM---DNNIEFCKKNGYVTTMLN---------------- 765 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617 R R++ R+ + +Q + DI+ M+ Sbjct: 766 -------RKRFIREINEKNYM---------RQELGKRLAMNSPIQGSAADIIKVAMIKVD 809 Query: 618 -----TKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESK 671 ++L VHDE++ + + E ++ MT+ + LK+EG + Sbjct: 810 ELFKKHNLKSKMILQVHDELIFDVYKEELEEVMEVVAKGMTTAVK--MNVELKSEGSYAI 867 Query: 672 RY 673 + Sbjct: 868 NW 869 >gi|46203235|ref|ZP_00051830.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Magnetospirillum magnetotacticum MS-1] Length = 485 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 85/554 (15%), Positives = 159/554 (28%), Gaps = 116/554 (20%) Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELW 186 R A Y D VT +++ ++P + E+ L Sbjct: 27 GDVAGTGRNKVTFERVAIDKATAYAAEDADVTLRLWRMMKPRLVAERRVTVYETLERPLV 86 Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + + G +D + L+ +L++E++ +++ LF + Sbjct: 87 PVLARMERAGIRIDRNMLSRLSGDFSQILARLEEEIQEDAG-EKFQVSSPKQIGDVLFGK 145 Query: 247 TGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 GL T + T +L + + + N + ++ ++L E + + Sbjct: 146 LGLPGAKKTPSGQWATPATLLEELAQAGHELPKKILNWRQLAKLKSTYTDSLQEHADRET 205 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 T L A+ TGR S QN+P + Sbjct: 206 NRVHTSFSLAATTTGRLSSSEPNLQNIPIRTEEGRR------------------------ 241 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R +A EGKKL+ AD + IE R+LA +A +AFE G D++ T + F V Sbjct: 242 -IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATASAMFGVPLD 300 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 Q+T D R K + + Y A L + E + ++ Sbjct: 301 QMTGDLRRRAKTINFGIIYGISA-----FGLADRLGIGREEASAFIKQYFERFPGIRDYI 355 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 +++ E G C R + + + G A + Sbjct: 356 DTTKKSCREKGYVTTLFGRVCHYP--QIRSNNPSERA---SVERQAINAPIQGTAADIIR 410 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 R + L + Sbjct: 411 R-----------------------------------AMTRMEAALEAKR----------- 424 Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWA--K 659 + A ++ +V E PD + ++ +M P+ A Sbjct: 425 ------LTARMLLQVHDE-----------LVFEVPDDEVEATIPVIAEVMEQAPAPALTL 467 Query: 660 GLPLKAEGYESKRY 673 +PL E + + Sbjct: 468 SVPLVVEARAAGNW 481 >gi|168333372|ref|ZP_02691652.1| DNA polymerase I [Epulopiscium sp. 'N.t. morphotype B'] Length = 865 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 102/683 (14%), Positives = 202/683 (29%), Gaps = 145/683 (21%) Query: 10 TRSPIDLTKCGICKYAEDVCV-ILFAFGFDDHPVELW---DCVHDPVMPQVLKEALENTD 65 T DL + E+ + + A D + + + + +K E + Sbjct: 305 TSVLADLDTAAVFAVLENDTLYMGVA----DGSNCYFIAANLAQEYDIIA-VKNFFEAKN 359 Query: 66 VTIVAHNSYFE-RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL-----KLS 119 ++ + HNS + R +L ++I T + + + + A K Sbjct: 360 ISKILHNSK-DLRHILYRYQ-INIH-GNIFDTAIASYLINPLQSDYELSVAATGYDIKHV 416 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 Q + GK I + + + D ++F Sbjct: 417 DQLLGTGKNKITWASLASXIIVAQLGARASAMWTLQTAQLKELTDA-SMLDLFY------ 469 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G VD A + +D L+Q++ SL + ++L Sbjct: 470 DIEMPLIEVLFDMEIAGITVDAAFLTAFGKKLDALIATLEQDIYSL-ADEKFNISSSKQL 528 Query: 240 KTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + G+ T+ +T +L K +V R + + L++ Sbjct: 529 GLILFDKLGIPAGKKTKTGYSTAANILDKLKDKYVIVAKVLEYRQY-KKLHSTYVVGLLK 587 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 ++ + +L T + TGR S QN+P +E Sbjct: 588 LLDKNNKLHSTFNQ-TVTATGRISSAEPNLQNIPIRLALGKE------------------ 628 Query: 357 LQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R I S + + AD + IE RVLA ++ + +AF G D++ +T + Sbjct: 629 -------IRRAFIPSNDDYVFLDADYSQIELRVLASLSADANMQRAFLEGIDIHTSTASE 681 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F V D + A G++ + A ++ Sbjct: 682 VFGV-------DTVTQAQRN---------AAKAVNFGVVYGISAFSLADDIQ-------- 717 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + + K+ V + L + T Sbjct: 718 ----------------------VSNQEATEYIENYFAKYPNVKHYLDSLITTSQAT--GY 753 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 + ++R++ ++ T R Sbjct: 754 GVTLLNRKRNIVELFSSNFN---------------------------TKEYGKRIAMNMP 786 Query: 596 KLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHL 650 +Q + DI+ + M+ A ++LTVHDE++ E ++ + +L Sbjct: 787 ------IQGTAADIIKKAMIQVHNALKGTRSTLILTVHDELLLEVHKSEIEHITKLLKTE 840 Query: 651 MTSNPSWAKGLPLKAEGYESKRY 673 M S A +PL + + Sbjct: 841 MESAVKLA--VPLLVDVKSGXSW 861 >gi|313115485|ref|ZP_07800950.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622195|gb|EFQ05685.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii KLE1255] Length = 864 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 102/651 (15%), Positives = 194/651 (29%), Gaps = 154/651 (23%) Query: 35 FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLKACFNLDIPIHR 92 + D V L L+N DVT+ N+ + + + + I Sbjct: 352 YAVQDCTVY--PLED-----ADLVRLLDNADVTLEVFNAAPLYAKAMAAGGWGSSI---- 400 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 + A ++ K I+ + ++ + Sbjct: 401 VWDGKLAAYLLDASAS------------------KYQISELTASYRAAAAFTC--ADYPD 440 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 A RL +CK +T + E L + + G VD + Sbjct: 441 AGRLADLFCKMKAEITA--CGEDSLYNEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLR 498 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ETTCQRVLSSNKKL 269 E ++ + T + ++L LF GL T +T L S + Sbjct: 499 TELEQVLTRIHMETGSASFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLESLRD- 557 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P + R + + L++ + DGR+ T A RTGR S QN+ Sbjct: 558 YPLVEDILQYR-AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNI 615 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P + + +R+ IA G LV AD + IE R+L Sbjct: 616 PIRTE-------------------------LGSQLRAYFIAKPGCVLVDADYSQIELRIL 650 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A + G++ +AF GED++ +T A+ + + +VT R+ K + Sbjct: 651 AHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQEEVTSRLRSSAKAIN------------- 697 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 G + A + + K Sbjct: 698 -FGIMYG------------------------------KGAYSLAKDIGVSVKEADAFLKN 726 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + +VS ++ + + GR Sbjct: 727 YLAAFPKVSGYMDKTIADAKAC--------------------------GYVSTLFGRRRA 760 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYD 623 ++ ++ + ++ ++ R +Q + D++ M+ K Sbjct: 761 LPELASSNFNVRSSGERMAR---------NTPIQGTAADVIKLAMVRVWKRLRNEKMESR 811 Query: 624 IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 ++LTVHDE++ E P + A+ + M +A +PL + + K + Sbjct: 812 LILTVHDELIVEAPQAEAEKAAQILREEMEGCVQYA--VPLSTDVHAGKNW 860 >gi|229076089|ref|ZP_04209057.1| DNA polymerase I [Bacillus cereus Rock4-18] gi|228706952|gb|EEL59157.1| DNA polymerase I [Bacillus cereus Rock4-18] Length = 890 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 91/667 (13%), Positives = 181/667 (27%), Gaps = 141/667 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + + K L N ++ ++ LK Sbjct: 342 HKADIQGFG--IQNENGCYFIQTDIALASEAFKAWLANGEMRKHTFDAKRAIVALKW-KG 398 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +DI L+ A K K ++ K + KG Sbjct: 399 IDIQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 455 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y + + ++ E + E L + + +G VD Sbjct: 456 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 514 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 515 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 573 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 574 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 632 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 633 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 667 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + Sbjct: 668 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNF--- 724 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 G++ + Sbjct: 725 -----------GIVYGISDYGLSQ------------------------------NLGITR 743 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 A + + + V E +++ + + G Sbjct: 744 KAAAEFIEKYLESFPGVQEYMDDI---VKDAKQKGYVATLLN------------------ 782 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR-----------DI 609 R ++ + R +Q + D Sbjct: 783 -----RRRYIPEITSRNF---NLRSFAERTAMNTP------IQGSAADIIKIAMIIMAD- 827 Query: 610 LAEGMMNATKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 + G ++L VHDE++ E P + L +M A +PLK + Sbjct: 828 ------RLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 879 Query: 667 GYESKRY 673 + Sbjct: 880 YSYGPTW 886 >gi|229118078|ref|ZP_04247437.1| DNA polymerase I [Bacillus cereus Rock1-3] gi|228665301|gb|EEL20784.1| DNA polymerase I [Bacillus cereus Rock1-3] Length = 890 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 91/667 (13%), Positives = 181/667 (27%), Gaps = 141/667 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + + K L N ++ ++ LK Sbjct: 342 HKADIQGFG--IQNENGCYFIQTDIALASEAFKAWLANGEMRKHTFDAKRAIVALKW-KG 398 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +DI L+ A K K ++ K + KG Sbjct: 399 IDIQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 455 Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y + + ++ E + E L + + +G VD Sbjct: 456 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 514 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 515 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 573 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + + L++ ++ D T ++TGR S Sbjct: 574 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 632 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R + EG + AD Sbjct: 633 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 667 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + Sbjct: 668 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNF--- 724 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 G++ + Sbjct: 725 -----------GIVYGISDYGLSQ------------------------------NLGITR 743 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 A + + + V E +++ + + G Sbjct: 744 KAAAEFIEKYLESFPGVQEYMDDI---VKDAKQKGYVATLLN------------------ 782 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR-----------DI 609 R ++ + R +Q + D Sbjct: 783 -----RRRYIPEITSRNF---NLRSFAERTAMNTP------IQGSAADIIKIAMIIMAD- 827 Query: 610 LAEGMMNATKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 + G ++L VHDE++ E P + L +M A +PLK + Sbjct: 828 ------RLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 879 Query: 667 GYESKRY 673 + Sbjct: 880 YSYGPTW 886 >gi|332670348|ref|YP_004453356.1| DNA polymerase I [Cellulomonas fimi ATCC 484] gi|332339386|gb|AEE45969.1| DNA polymerase I [Cellulomonas fimi ATCC 484] Length = 915 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 99/670 (14%), Positives = 180/670 (26%), Gaps = 141/670 (21%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNL 86 A +D + L L + V H S L Sbjct: 358 GDAWGIALADASGQAAAFDLSQVDPADENALAAWLADPAQPKVVHASKEAWHALA---GR 414 Query: 87 DIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +P+ T + A A L + + + + D Sbjct: 415 GMPLAGVTFDTELAAYLCQPDR------RAYDLGDLAIGYLRRELGSEDAQVGGQGALDL 468 Query: 146 NKPNHREAWRLFGEY-CKGDV--TVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVD 200 E R D+ + E+ R E L + + G D Sbjct: 469 ELDGTDEGRRAAVRASAVRDLADVLAGELGDRGADGLLRDLELPLVDVLARMERTGIATD 528 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--- 257 A +L + D + E ++ V + ++L+ LF + G+ +T Sbjct: 529 GAYLSSLEKSFDAQVQDAAAEAYAVIGREV-NLGSPKQLQEVLFDQLGMPKTKKIKTGYT 587 Query: 258 TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 T L+ + P + +R + L+ ++ DGR+ T Q A+ Sbjct: 588 TDAASLTDLFARTQHPFLEHLLAHRDAIRLRQT--VEGLLRSVAPDGRIHTTFQQTIAA- 644 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK- 374 TGR S QN+P + + +R + +G Sbjct: 645 TGRLSSADPNLQNIPIRTEAGR-------------------------QIRRAFVVGDGYE 679 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 L+ AD + IE R++A ++G++ + AF +GEDL+ +R F V +VT R+ K Sbjct: 680 TLLTADYSQIEMRIMAHLSGDEGLIDAFRSGEDLHSYVGSRVFGVPTDEVTPAMRSKIKA 739 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 M L Y + L Sbjct: 740 MSYGLAYG-----LSSYGLSQQL------------------------------------- 757 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + + + + + V + + T Sbjct: 758 --TIEVSEAAGLMQDYFARFGGVRDYLTGVVDVARTT----------------------- 792 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 GR D+ ++ R +Q + D++ M Sbjct: 793 ---GYTQTILGRRRYLPDLTSDN---RQRREAAERMALNAP------IQGSAADLIKVSM 840 Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA----KGLPL 663 + + ++L VHDE+V E + L M + A +PL Sbjct: 841 LGVDRELTRRGLASRLLLQVHDELVLEVAAGEREEVEALVREQMGAAGDAATDGPLDVPL 900 Query: 664 KAEGYESKRY 673 + Sbjct: 901 DVSVGVGGSW 910 >gi|296119659|ref|ZP_06838217.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306] gi|295967542|gb|EFG80809.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306] Length = 864 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 98/651 (15%), Positives = 193/651 (29%), Gaps = 143/651 (21%) Query: 37 FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-IC 95 FD EL D + + L LE+ H + +L+ I ++ Sbjct: 338 FDAIHAELADLSAEDD--KALAAWLESDA-EKFLHEAKAAYHMLQ---GRGITLNGIAHD 391 Query: 96 TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 T + A Q+ E ++ R + + + Sbjct: 392 TALAAYLLRPG--------------QRTYELPDVYQRHLRKTLEASSEQLSLLDDTGGID 437 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDV 213 + V +T+ + + E E+ + + G V+V + ++ Sbjct: 438 SAVAIMELTVELTKALQEIDSYQLYAELEIPLVSILAKMEATGIAVNVDTLESQQEVFAN 497 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK--K 268 ++ L + ++L+T LF L T+ +T + + Sbjct: 498 HVAAEEKAARELAGDDTLNLNSPKQLQTVLFETLDLPKTKKTKTGYSTAAKEIEQLAINH 557 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 P + +R + L L++ + DGR+ T A TGR S QN Sbjct: 558 PHPFLDHLLAHR-EYQKLKTT-LEGLIKTVQPDGRIHTTFNQTVA-STGRLSSTEPNLQN 614 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEAR 387 +P + S +RS I EG L+ AD + IE R Sbjct: 615 IPVRTESGRT-------------------------IRSAFIVGEGYETLLTADYSQIEMR 649 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 V+A ++ + ++A++ GEDL+ +R F+V +VT + R K M L Sbjct: 650 VMAHLSQDPGLIEAYKEGEDLHNYVGSRVFDVPVDKVTSELRRRVKAMSYGLV------- 702 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 GL+ + + + ++ Sbjct: 703 -------YGLSAFGLSQQLSIPAG------------------------------EAKKTM 725 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 A+ + V + ++ + + + GR Sbjct: 726 DAYFDRFGGVKKYLADVVEQARK--------------------------DGYTATVFGRR 759 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYD 623 ++ ++ R +Q + DI+ M+ +A Sbjct: 760 RYLPELISDN---RLARENAERAALNAP------IQGTAADIIKVAMIRVDQALEGFKSR 810 Query: 624 IVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + + M ++ S +PL+ + Sbjct: 811 VLLQVHDELVVEVAPGELNKVQEIVEREMDASIS--LRVPLEVSAGTGDNW 859 >gi|300933405|ref|ZP_07148661.1| DNA polymerase I [Corynebacterium resistens DSM 45100] Length = 864 Score = 288 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 100/667 (14%), Positives = 196/667 (29%), Gaps = 162/667 (24%) Query: 33 FAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82 A D + + D H DP + +K L + H++ L Sbjct: 329 LAVDIDGERLTVLDGDHVGVEMDLADLDPKDEKAIKTWLADPASPKWFHDAKRAFHALA- 387 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 L++ + A + +G+ L + Sbjct: 388 PQGLELDGVE-HDASIAAYLLRPDVRISGLGDIL-----------------------QSQ 423 Query: 143 YDRNKPNHREAWRLFGEYCKGDVT--VTREIFKRLEPLSSKEQEL--WYLDQTINDRGYC 198 R P + + + D+ +T ++ + + E+ + + G Sbjct: 424 AGRELPANADGFDRA--QAVRDLVKVLTEKLAAAKQEELYYDLEVPLCLILARMEHEGIA 481 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256 VD L+ + + L + ++L+ LF + L T+ Sbjct: 482 VDGEHLQELSNDYAAKIDEEIAAARELAGDSTLNLSSPKQLQKVLFDDFDLPKTKRTKTG 541 Query: 257 -TTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T L P + +R + ++ L+EA+ DGR+ T GA Sbjct: 542 YSTAAAELEKLTAQTNHPFLAHLMAHR-EYQKMKTT-IDGLIEAIGDDGRIHTTFNQKGA 599 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGR S QN+P + + +R+ A G Sbjct: 600 A-TGRLSSSDPNLQNIPVRTDAGRR-------------------------IRAAFHAGWG 633 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 + L+ AD + IE RV+A ++ ++ ++A+++GEDL+ +R F+V QVT + R K Sbjct: 634 ETLLTADYSQIEMRVMAHLSQDEGLIEAYKSGEDLHNYVGSRVFDVPVDQVTPELRRRVK 693 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + L GL+ + Sbjct: 694 ALSYGLV--------------YGLSAFGLSQQ---------------------------- 711 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + + + + + V +E+ ++T Sbjct: 712 --LGISAGEAKVIMENYFTRFGGVKRYLDEVVHQAKET---------------------- 747 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 GR ++ ++ R +Q + DI+ Sbjct: 748 ----GYTETLYGRRRYLPELNSSN---RVARENAERAALNAP------IQGTAADIIKLA 794 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 M+ +A ++L VHDE+V E + S L M + +PL+ Sbjct: 795 MLRVDRAIREQNLKSRVLLQVHDELVVEVAKGELDKVSELVQREMDAAAR--LRVPLEIS 852 Query: 667 GYESKRY 673 K + Sbjct: 853 AGHGKNW 859 >gi|291522321|emb|CBK80614.1| DNA polymerase I [Coprococcus catus GD/7] Length = 877 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 85/604 (14%), Positives = 171/604 (28%), Gaps = 142/604 (23%) Query: 92 RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 + A LK ++ + + L Sbjct: 390 GIFDAAIAAYLINP---LKDSYTYDGIAQDFLG--------MTVPSRADWLKKMTLTEAS 438 Query: 152 EA-WRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVD 200 E FG Y + + + L+ E L Y + G V+ Sbjct: 439 EKEKESFGHYLAYSAMIPVQAYSTLKKRLEETGMDRLFDEIEMPLVYALYDMEKAGIAVE 498 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + +L++ + L + ++L LF + GL T+ + Sbjct: 499 KDALAEYGSRLTGRIDELEKNIYELAG-ESFNINSPKQLGIILFEKLGLPFAKKTKTGYS 557 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRT 316 T +L + P Q+ R ++ + L + D R+ G + T Sbjct: 558 TSADILEKLRTYDPIVGQILEYRQ-LTKLKSTYADGLAGYIRPDDQRIHGKFNQ-TITAT 615 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + +R + E Sbjct: 616 GRISSTEPNLQNIPVR-------------------------MELGRLIRKVFVPKEDCIF 650 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V AD + IE RVLA MAG++ ++A++ +D++ T ++ F+ +VT QR+ K + Sbjct: 651 VNADYSQIELRVLAHMAGDEHLIQAYKEAQDIHRMTASQVFHTPFDEVTPAQRSNAKAVN 710 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y + L++ Sbjct: 711 FGIVYGIS-----SFGLSQDLSI------------------------------------- 728 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 E + + + + + L ++ E E G A+ Sbjct: 729 --TKKEAENYIQQYFRTYPGIKAF---LDRSVEDAKEKGYAVTL---------------- 767 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 GR ++ ++ + R +Q + DI+ M+ Sbjct: 768 -------FGRRRPVPELLSSNFMQRSF---GERIAMNSP------IQGTAADIIKIAMVR 811 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYE 669 + ++L +HDE++ E + + M + A +PL+ + + Sbjct: 812 VNRRLKRQHMKSRLILQIHDELLIEAVLDEVDAVKAILKEEMEHAATLA--VPLEIDMHT 869 Query: 670 SKRY 673 + Sbjct: 870 GHNW 873 >gi|320547600|ref|ZP_08041885.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812] gi|320447675|gb|EFW88433.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812] Length = 878 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 91/680 (13%), Positives = 186/680 (27%), Gaps = 163/680 (23%) Query: 28 VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ F + + D + + K AL ++ Sbjct: 324 FEILGDNYHVENIIGFAWGNDKAIYVSTNLDLLKDDLFKAALAKP--IKT-----YDFKR 376 Query: 79 --VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136 VL + +D+P + + + ++ +L + Sbjct: 377 SKVLLSHLGVDLP-APAFDSRLAKYLLS------------TVDDNELSTIAQLYTDYVLD 423 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-------EIFKRLEPLS--SKEQELWY 187 K E L + V + ++ + + EQ L Sbjct: 424 SDEAVYGKGVKRAVPEKAVLLSHLARKIVVLNHSEKVMLGKLTEHQQASLLFDMEQPLAN 483 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + G V + + L QE+ L + ++L LF + Sbjct: 484 VLAKMEIAGISVKKETLQEMEKANQAAIDNLTQEIYDLAGM-EFNINSPKQLGELLFDKM 542 Query: 248 GLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 L T+ +T VL ++P ++ R ++ + L + + DG Sbjct: 543 QLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQ-IAKLQSTYIVGLQDFILKDG 601 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 ++ ++TGR S QN+P Sbjct: 602 KIHTRYLQD-LTQTGRLSSVDPNLQNIPVRLEQGR------------------------- 635 Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA- 420 +R + + L+ +D + IE RVLA ++ ++ + AF G D++ +T R F + Sbjct: 636 LIRKAFVPETADEVLLSSDYSQIELRVLAHISNDEHLIAAFNEGADIHTSTAMRVFGIEK 695 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 P VT + R K + G++ A+ Sbjct: 696 PEDVTPNDRRNAKAVNF--------------GIVYGISDYGLAN---------------- 725 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 ++ + + +++ + + + + + Sbjct: 726 --------------NLGIPRKVAKQYIETYFERYPGIKDYMERVVRDAKD---------- 761 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 + R D+ + R Sbjct: 762 ----------------KGYVETLFHRRRELPDINARNFNVRQF---AERTAINSP----- 797 Query: 601 IVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTS 653 +Q + DIL M+N KA ++L VHDEI+ E P + L M S Sbjct: 798 -IQGSAADILKIAMINLDKALVEGKFKTKMLLQVHDEIILEVPKDELEAIEKLVKETMES 856 Query: 654 NPSWAKGLPLKAEGYESKRY 673 +PL A+ + + Sbjct: 857 AIE--LSVPLVADESAGQTW 874 >gi|229820688|ref|YP_002882214.1| DNA polymerase I [Beutenbergia cavernae DSM 12333] gi|229566601|gb|ACQ80452.1| DNA polymerase I [Beutenbergia cavernae DSM 12333] Length = 910 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 99/669 (14%), Positives = 179/669 (26%), Gaps = 143/669 (21%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFN 85 A D D + L + L + + H++ A Sbjct: 360 SGDAWALAIADADGAALGIDLAEIDPADEKVLAQWLADPEAPKAVHDAK---PAWHALTG 416 Query: 86 LDIPIHRWI-CTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKEL---IARFCKGET 138 + + + T + A L + + E + Sbjct: 417 RGLEVRGVVMDTALAAYLCHPDQRSYDLADLVVRYLHRELPRTDLDETGQGMLDLDADSG 476 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198 + R A L E E E L + G Sbjct: 477 AKSAGARAVAVVELAGPLAEEVADRGAQALLE---------DVELPLLRTLAEMEHDGIG 527 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET- 257 DV + + D + V + ++L+ LF + G+ T+T Sbjct: 528 ADVEYLRGIEREFDAVVERAALGAYEAIGRQV-NLGSPKQLQEVLFDDLGMPKTRRTKTG 586 Query: 258 --TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 T L+ K P + +R A R + L+ ++ DGR+ T Q A Sbjct: 587 YTTDADALADLYVKTEHPFLEHLLAHR-EAIRLRQT-VEGLLRSVAPDGRIHTTFQQTIA 644 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGR S QN+P + +R + EG Sbjct: 645 A-TGRLSSADPNLQNIPIRTEEG-------------------------YRIREGFVVGEG 678 Query: 374 K-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 L+ AD + IE R++A ++G++ ++AF +GEDL+ +R F V +VT R+ Sbjct: 679 YETLLTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHSYVGSRVFGVPTDEVTSAMRSKI 738 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K M L Y + L+++ Sbjct: 739 KAMSYGLAYG-----LSAFGLSKQLSIDVA------------------------------ 763 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + V + + + Q Sbjct: 764 ---------EARTLMDDYFDRFGGVRDYLSGVVAQARQ---------------------- 792 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 GR D+ ++ R +Q + D++ Sbjct: 793 ----VGYTETLMGRRRYLPDLTSDN---RQRREMAERMALNAP------IQGSAADLIKV 839 Query: 613 GMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665 M+ + ++L VHDE+V E + L M + +PL Sbjct: 840 AMLGVHRQMGEAGMSSRLLLQVHDELVLEVAPGEREALEELVRAQMGAAAE--LSVPLDV 897 Query: 666 EGYESKRYR 674 + +R Sbjct: 898 SVGTGRSWR 906 >gi|325689238|gb|EGD31244.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK115] Length = 880 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 100/660 (15%), Positives = 186/660 (28%), Gaps = 149/660 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85 ++ A+ ++ Q L + ++ VL + + Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140 +++P + + L + L + GK + E Sbjct: 388 IELPAAS-FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF 446 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 R E E +L+ L EQ L ++ + G V+ Sbjct: 447 EHLARKIQVLLETEEPMQEQ--------LRAHNQLDLLLEMEQPLAFVLAKMEIAGIKVE 498 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256 + + L QE+ L + ++L T LF + GL L T+ Sbjct: 499 RETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTG 557 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + P ++ R S+ + L EA+ +DG++ ++ Sbjct: 558 YSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQ 615 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374 TGR S QN+P +R + Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADS 650 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + R K Sbjct: 651 VLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAK 710 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + G++ A+ Sbjct: 711 AVNF--------------GVVYGISDFGLAN----------------------------- 727 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 A + + + ++ + + + Sbjct: 728 -NLGISRKAAKDYIETYFERFPGIKNYMETIVREARD----------------------- 763 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + R D+ + R +Q + DIL Sbjct: 764 ---KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVA 811 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 M+N +A ++L VHDEIV E P+ + L M + A +PL A+ Sbjct: 812 MINLDRALTENNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869 >gi|22536572|ref|NP_687423.1| DNA polymerase I [Streptococcus agalactiae 2603V/R] gi|25010498|ref|NP_734893.1| DNA polymerase I [Streptococcus agalactiae NEM316] gi|76786985|ref|YP_329109.1| DNA polymerase I [Streptococcus agalactiae A909] gi|77406448|ref|ZP_00783505.1| DNA polymerase I [Streptococcus agalactiae H36B] gi|77411656|ref|ZP_00787996.1| DNA polymerase I [Streptococcus agalactiae CJB111] gi|22533407|gb|AAM99295.1|AE014209_8 DNA polymerase I [Streptococcus agalactiae 2603V/R] gi|23094851|emb|CAD46069.1| DNA polymerase I [Streptococcus agalactiae NEM316] gi|76562042|gb|ABA44626.1| DNA polymerase I [Streptococcus agalactiae A909] gi|77162300|gb|EAO73271.1| DNA polymerase I [Streptococcus agalactiae CJB111] gi|77174950|gb|EAO77762.1| DNA polymerase I [Streptococcus agalactiae H36B] Length = 880 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 104/695 (14%), Positives = 197/695 (28%), Gaps = 162/695 (23%) Query: 8 FETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALE 62 E S D G + ED L + + + + Q K+AL Sbjct: 315 TEMFSDNDFYYFEMLGDNYHVED----LIGIAWGNSDTIY--ATSNVSLLQEALFKKALS 368 Query: 63 NTDVTIVAHNSYFERT---VLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGE 114 ++ VL FN+D+P T + L S + + Sbjct: 369 KP--IKT-----YDFKRSKVLLNRFNIDLP-EPAFDTRLAKYLLSTTEDNLVSTIARLYT 420 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L L + GK + + + + +++ Sbjct: 421 NLPLDTDDAVYGKGAKRAIPEKTR----------FLEHLAKKVKVLVDSEANIMQQLKAN 470 Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + EQ L + + RG V + + L QE+ L + Sbjct: 471 EQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQ-EFN 529 Query: 233 SRCLEKLKTWLFLETGLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 ++L LF GL + T+ +T VL ++P ++ R ++ Sbjct: 530 INSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQ-ITKLQ 588 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L + + DG++ ++TGR S QN+P Sbjct: 589 STYIIGLQDYILEDGKIHTRYVQD-LTQTGRLSSSDPNLQNIPVRLEQGR---------- 637 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 +R + SE L+ +D + IE RVLA ++ ++ + AF+ G Sbjct: 638 ---------------LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGA 682 Query: 407 DLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D++ +T R F + P VT + R K + G++ + Sbjct: 683 DIHTSTAMRVFGIEKPENVTPNDRRNAKAVNF--------------GIVYGISDFGLS-- 726 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 ++ + +++ + + Sbjct: 727 ----------------------------HNLGIPRKLAKQYIDTYFERYPGIKNYMETVV 758 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + + + R D+ + + Sbjct: 759 REAKD--------------------------KGYVETLFHRRRSLPDINSRNFNIRQF-- 790 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDT 639 R +Q + DIL M+N + ++L VHDEIV E P+ Sbjct: 791 -AERTAINSP------IQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNE 843 Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + L M S S +PL A+ + + Sbjct: 844 EIGAIRELVTKTMESAIS--LSVPLIADENAGETW 876 >gi|295103350|emb|CBL00894.1| DNA polymerase I [Faecalibacterium prausnitzii SL3/3] Length = 857 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 102/655 (15%), Positives = 198/655 (30%), Gaps = 162/655 (24%) Query: 35 FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLKACFNLDIPIHR 92 + D V L + L L+N DVT+ NS + + + + I Sbjct: 345 YAVQDTTVYLLE-------DAELLRLLDNADVTLDVFNSAPLYAKAMAAGGWGSSI---- 393 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 + A ++ K I+ + ++ + Sbjct: 394 VWDGKLAAYLLDASAS------------------KYQISELIPAYKAAAAFTCT--DYPD 433 Query: 153 AWRLFGEYCKGDVTVTR----EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 A RL + + +T ++ + E L + + G VD Sbjct: 434 AGRLADLFARMKAEITACGEDALY------NEIEFPLAQVLADMTRTGVLVDKDGIEQFG 487 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ETTCQRVLSS 265 + E ++ + T + ++L LF GL T +T L S Sbjct: 488 VKLREELEQVLTRIHMETGSATFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLES 547 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 ++ P V R + + L++ + DGR+ T A RTGR S Sbjct: 548 LRE-YPLVEDVLQYR-AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPN 604 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P + + +R+ +A G LV AD + IE Sbjct: 605 LQNIPIRTE-------------------------LGSQLRAYFVAKPGCVLVDADYSQIE 639 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA + G++ +AF GED++ +T A+ + + ++VT R+ K + Sbjct: 640 LRILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAIN--------- 690 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G + + + + Sbjct: 691 -----FGIMYG------------------------------KGAYSLSKDIGVTVKEADA 715 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 K + VS ++ + N + G Sbjct: 716 FLKNYLAAFPNVSGYMDKTIADAK--------------------------ANGYVSTLFG 749 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TK 619 R ++ + + + ++ R +Q + D++ M+ K Sbjct: 750 RRRTLPELASTNFNVRASGERMAR---------NTPIQGTAADVIKLAMVRVWKRLRDEK 800 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 ++LTVHDE++ E P+ + A+ + M +A +PL + + K + Sbjct: 801 MASRLILTVHDELIVEAPEVEAEQAARILREEMEGCVQYA--VPLSTDVHAGKNW 853 >gi|329121315|ref|ZP_08249941.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965] gi|327469724|gb|EGF15190.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965] Length = 857 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 92/596 (15%), Positives = 180/596 (30%), Gaps = 140/596 (23%) Query: 92 RWICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 ++ ++A VGE K+ S ++E + + D Sbjct: 384 KFYDVTLIAYLLDPTHVTYNRSYVGELFKVPSIYIDEN------ASFEQNGNMIADFLLA 437 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + ++ L K D+ + EQ L + + G +D + Sbjct: 438 LYTSSYELLV---KNDIEKLFK---------EVEQPLIEVLAEMEKNGISIDEENWKKVR 485 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 + + + KL E+ + ++L LF + G+ T+ +T VL + Sbjct: 486 KNMKEKEEKLLLEIYREAG-EEFNVNSPKQLSHILFDKMGMPTGKKTKTGYSTAADVLEN 544 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 P + R ++ L+ + + + + T + TGR S Sbjct: 545 LAIDYPFVKNILEYR-TLAKLISTYLDAIPLLVRKETKRVHTSFNQMVTATGRLSSSDPN 603 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGI 384 QN+P + + +RS + EG + +D + + Sbjct: 604 LQNIPVRTEEGK-------------------------VIRSLFVPGEGYDFFISSDYSQV 638 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RVLA M+G++ ++AFE ED++ T + F V +VT +QR+ K + + Y Sbjct: 639 ELRVLAHMSGDEGLIRAFENKEDIHRRTASEVFGVPFEEVTSEQRSHAKAVNFGIIYGIS 698 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 + L + Sbjct: 699 -----DFGLSKQLG---------------------------------------ISRKKAD 714 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 K + +++ + E ++ + +T + + Sbjct: 715 EYIKTYLKRYPGIHEFMKKMTEEARKTGK--------------------------VKTLF 748 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------T 618 GR D+ + R +Q + DI+ M+ Sbjct: 749 GRYRDLPDINSKNF---QRRSFAERTAMNTP------IQGSAADIMKIAMIQVYGKMKKG 799 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 K I+L VHDE+V E + +L M S S + L A+ + K + Sbjct: 800 KYKSRILLQVHDELVIEAVKEEVEEISKLLKETMESVVS--LKVKLVADVHVGKNW 853 >gi|229099047|ref|ZP_04229981.1| DNA polymerase I [Bacillus cereus Rock3-29] gi|228684275|gb|EEL38219.1| DNA polymerase I [Bacillus cereus Rock3-29] Length = 890 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 88/676 (13%), Positives = 179/676 (26%), Gaps = 159/676 (23%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + + K L N ++ ++ LK Sbjct: 342 HKADIQGFG--IQNENGCYFIQTDIALASEAFKAWLANGEMRKRTFDAKRAIVALKW-KG 398 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +DI L+ A + K + ++ E +Y + Sbjct: 399 IDIQGID-FDLLIAAYLLDPA------------DTDKDFRTVAKMKETHAVKSDEEVYGK 445 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDR 195 + E+ V V ++ + E L + + + Sbjct: 446 GAKRAVPELEVVAEHVARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVK 505 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G VD + + + +++QE+ L + ++L LF L + T Sbjct: 506 GVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKT 564 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T VL + + R + + L++ ++ D T Sbjct: 565 KTGYSTSADVLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQV 623 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-S 371 ++TGR S QN+P + +R + Sbjct: 624 LTQTGRLSSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSE 658 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 EG + AD + IE RVLA +A ++ ++AF+ D++ T F V +VT + R Sbjct: 659 EGWIMYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQ 718 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + G++ + Sbjct: 719 AKAVNF--------------GIVYGISDYGLSQ--------------------------- 737 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 A + + + V E +++ + + G Sbjct: 738 ---NLGITRKAAAEFIEKYLESFPGVQEYMDDI---VKDAKQKGYVATLLN--------- 782 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR---- 607 R ++ + R +Q + Sbjct: 783 --------------RRRYIPEITSRNF---NLRSFAERTAMNTP------IQGSAADIIK 819 Query: 608 -------DILAEGMMNATKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657 D + G ++L VHDE++ E P + L +M Sbjct: 820 IAMIIMAD-------RLDEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIEL 872 Query: 658 AKGLPLKAEGYESKRY 673 A +PLK + + Sbjct: 873 A--VPLKVDYSYGPTW 886 >gi|313889726|ref|ZP_07823368.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN 20026] gi|313121771|gb|EFR44868.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN 20026] Length = 881 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 93/670 (13%), Positives = 184/670 (27%), Gaps = 163/670 (24%) Query: 34 AFGFDDHPVELW----DCVHDPVMPQVL-KEALENTDVTIVAHNSYFERT---VLKACFN 85 AF + + D + P+ +VL K L ++ VL + Sbjct: 341 AFAWGNQETIYVSQNPDLLRQPLFTKVLEKPILT------------YDFKRTKVLLSHLG 388 Query: 86 LDIPIHRWICTLVLARSNGL--PSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140 ++I + + L + L S + GK + F + Sbjct: 389 VEISEAA-FDARLANYLLSNVDDNELATIARLHTSISLESDEAVYGKGVKRAFPAKDLLF 447 Query: 141 CLYDRNK----PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 R + E + D ++ ++E L + + G Sbjct: 448 AHLARKVAVLATSKPVMLEKLAENGQSD------LYYKIE------LPLANVLAKMEIAG 495 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDL 254 V+ + + L QE+ L + ++L + LF + L + Sbjct: 496 IKVNKLTLMEMAEQNRNIIDALTQEIYDLAG-EEFNINSPKQLGSILFEKMQLPLTMTKK 554 Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 T+ +T VL + P ++ + R ++ L L + + DG++ Sbjct: 555 TKTGYSTAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYLIGLQDYIMEDGKIHTRYVQD 613 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 ++TGR S QN+P +R S Sbjct: 614 -LTQTGRLSSTDPNLQNIPIRMEQGR-------------------------LIRKAFTPS 647 Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 + L+ +D + IE RVLA ++G++ + AF D++ T R F + Sbjct: 648 SDDWLLLSSDYSQIELRVLAHISGDEHLIAAFNDNADIHTATAMRVFGIEKEADVTANDR 707 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 G++ ++ Sbjct: 708 R-------------NAKAVNFGIVYGISDFGLSN-------------------------- 728 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + +++ + + + + + + Sbjct: 729 ----NLGISRQKARDYIDTYFERYPGIKKYMDAVVREAKD-------------------- 764 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + R D+ + R +Q + DIL Sbjct: 765 ------KGYVETLFKRRRELPDINSRNF---NVRSFAERTAINSP------IQGSAADIL 809 Query: 611 AEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663 M+N KA ++L VHDEIV E P + L +M A +PL Sbjct: 810 KIAMINLDKALVDGEFKAKMLLQVHDEIVLEVPKQELAAVRQLVKEIMEDAVDLA--VPL 867 Query: 664 KAEGYESKRY 673 +A+ + + Sbjct: 868 RADENSGQSW 877 >gi|169346903|ref|ZP_02865851.1| DNA-directed DNA polymerase [Clostridium perfringens C str. JGS1495] gi|169296962|gb|EDS79086.1| DNA-directed DNA polymerase [Clostridium perfringens C str. JGS1495] Length = 642 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 103/721 (14%), Positives = 185/721 (25%), Gaps = 155/721 (21%) Query: 2 ATLFIDFETRSPID---LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------- 51 + D E + L + ++ + + H Sbjct: 23 KVVAFDIECAPKNEWFRLNEKKAALDPNKGHIVGISLSVKEGTGIYIPLRHRNGKNVEDV 82 Query: 52 -VMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109 M LK N + VAHN FE + L + I T+ G Sbjct: 83 HRMIAWLKGFVFHNESLIKVAHNIAFESSFLYEY-GIVIK-EPVFDTM-----LGSMLTF 135 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 K+ GE L ++ + I + + N + Y D Sbjct: 136 KSFGEFRTLRECGLKLLAKEIFNEDLPSFSHVVNGTHFDNLHSEHKETVRYACADSDYAL 195 Query: 170 EIFKRLEPLSSKEQELWYLDQT------------INDRGYCVDVALAHTLNQIVDVERTK 217 ++ L + G ++ L N+ + E Sbjct: 196 RLYNWCLEWFETYIPEHRLVCERVESPAAVYTGIMKKNGITLNKELLQEFNRRAEEELEF 255 Query: 218 LDQELESLTYGLVSSSR--CLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKK--- 268 +E+ S V+ + K +LF + L + E + L + Sbjct: 256 CKREILSFANREVNLGSNLQTQDFKDFLFKDLRLPVLKICEKGEPSLDDESLILLDEWCL 315 Query: 269 ----LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 I+ R S+ + L + +N + T F + TGR+S Sbjct: 316 RNFKKGTYLIECIKRHKRVSKLKSTYIEALGKLLNCETGKIHTDFFSMGTETGRFSSRNP 375 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QNLPR H +R I S + D + I Sbjct: 376 NLQNLPRKDNDHLG-------------------------IRKLFIPSPNHVFLDFDFSQI 410 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT-------KDQRAIGKVMEL 437 E RV A+ ++ + AF D++ T + +N+ + T K +R I K Sbjct: 411 ELRVGAYYCRDRKMINAFMKDFDIHGITTSIIYNIPLEEATDRNHEDFKKRRTIAKNCNF 470 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + + K QK G Sbjct: 471 GVFFGLFPKGLQKTLMYKG--------------------------------------GIN 492 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 CER+ + + + R+S + + Sbjct: 493 ISEKDCERIIRNIKDGYPRLSTWQKDTVKVA--------------------------AYR 526 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 +GR +D+ + + +Q + DI+ M Sbjct: 527 GYTRSRTGRRRYLKDIKSKD---------WNKRAVSERCALNTPIQGTAADIIKIAMARI 577 Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSNPSWAKGLPLKAEGYESK 671 + +L +HDE++ E + + + M P +PLK E Sbjct: 578 LRELPEREYIKPLLQIHDELLFEVREDKVNEAIAFIKDCMERTPFKDFNIPLKVEYSVGY 637 Query: 672 R 672 Sbjct: 638 N 638 >gi|126435605|ref|YP_001071296.1| DNA polymerase I [Mycobacterium sp. JLS] gi|126235405|gb|ABN98805.1| DNA polymerase I [Mycobacterium sp. JLS] Length = 929 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 101/677 (14%), Positives = 195/677 (28%), Gaps = 128/677 (18%) Query: 16 LTKCGIC-KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNS 73 L G Y D + D D + L L + H + Sbjct: 357 LAVVGTHLAYDADATALAIVAA--DGDGRYIDTTSLDPDDEAALASWLADPGPPKALHEA 414 Query: 74 YFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKE 128 L + T + A +L + L+ + ++ Sbjct: 415 KLAMHDLA---GRGWKLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLRRELRADNPAQQ 471 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 ++ + + + A + D + R L E + + Sbjct: 472 QLSLLDDSDGGDDQAVQTLILRAVAVLDLAD--ALDEELARI--DSSSLLGRMELPVQRV 527 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G VD+ L + ++ + + ++L+ LF E Sbjct: 528 LAEMEHTGIAVDIDQLRQLQSEFADLIRDAAEAAYAVIGKQI-NLGSPKQLQAVLFDELA 586 Query: 249 LHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 + T+T T L S P + +R A+R V ++ L+ ++ SDGR Sbjct: 587 MPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHR-DATRLKVT-VDGLLNSVASDGR 644 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + T A+ TGR S QN+P + + + S + Sbjct: 645 IHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEAGRRIRDAFVVESRPPGSGGGAVFT---- 699 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +L+ AD + IE R++A ++ + ++AF TGEDL+ +R+F+V + Sbjct: 700 -----------ELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFDVPIDE 748 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT D R K M L GL+ A +K Sbjct: 749 VTPDLRRRVKAMSYGL--------------AYGLSAYGLAAQLKI--------------- 779 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 + + + + + ++ + Sbjct: 780 ---------------STEEAKVQMDQYFARFGGIRDYLRDVVDQARK------------- 811 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 + GR ++ ++ R +Q Sbjct: 812 -------------DGYTSTVFGRRRYLPELDSSN---RNVREAAERAALNAP------IQ 849 Query: 604 AVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPS 656 + DI+ M++ +A ++L VHDE++ E D + L M S Sbjct: 850 GSAADIIKVAMIDVDQAIKDAGLSSRMLLQVHDELLFEVADGERDTLEKLVRDKMGSA-- 907 Query: 657 WAKGLPLKAEGYESKRY 673 +A +PL+ + + Sbjct: 908 YALDVPLEVSVGYGRSW 924 >gi|319440322|ref|ZP_07989478.1| DNA polymerase I [Corynebacterium variabile DSM 44702] Length = 901 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 89/643 (13%), Positives = 169/643 (26%), Gaps = 146/643 (22%) Query: 45 WDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARS 102 D + L+ L + H++ E L + + T + A Sbjct: 386 IDLTDQDPADEATLRAWLADRGAPKWVHDAKAEWHKLN---GSGLVLAGVEQDTALAAYL 442 Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 + + + T + E Sbjct: 443 LRPDLRTGDLADV-------------VQRHVGHEITADAPGAVCAQATAELVAALTPELA 489 Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + E L + + G VD A L+ V+ E Sbjct: 490 EIGAMELYL--------DLEVPLATVLAKMEATGISVDAASLRDLSDEYGVQIEAEIAEA 541 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQ-VFN 278 ++ + ++L+ LF L T+ +T L P Sbjct: 542 RTIAGDDTLNLSSPKQLQKVLFETLELPKTKKTKTGYSTAAGELEKLAASHPHPFLGHLM 601 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + ++ L+EA+ DGR+ T GA+ TGR S QN+P + + Sbjct: 602 AHREYQKMKST-IDGLIEAVADDGRIHTTFNQRGAA-TGRLSSSDPNLQNIPVRTEAGRR 659 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQW 397 +R G L+ AD + IE RV+A ++ + Sbjct: 660 -------------------------IRGAFRVGTGYATLITADYSQIEMRVMAHLSQDPG 694 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++A+ GEDL+ ++ F+V VT + R K M L GL Sbjct: 695 LIEAYRAGEDLHNYVGSKVFDVPVEHVTPELRRRVKAMSYGLV--------------YGL 740 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + +++ + ++ V Sbjct: 741 SAFGLSQQ------------------------------LRISAGEAKQIMDNYFERFGGV 770 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +E+ ++T GR ++ ++ Sbjct: 771 KRYLDEVVAHAKET--------------------------GYTETLYGRRRYLPELNSSN 804 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631 + +Q + DI+ M+ ++L VHDE Sbjct: 805 RVAAEAAGRA---------ALNAPIQGTAADIIKRAMLRVDAEFTRRDLASRVLLQVHDE 855 Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E D ++ +L M +PL + Sbjct: 856 LVVEVVDGEQDVVTEILREQMDGAAD--LRVPLDVSTGVGSDW 896 >gi|125716978|ref|YP_001034111.1| DNA polymerase I [Streptococcus sanguinis SK36] gi|125496895|gb|ABN43561.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains, putative [Streptococcus sanguinis SK36] Length = 880 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 99/669 (14%), Positives = 187/669 (27%), Gaps = 155/669 (23%) Query: 28 VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ + D ++ Q L + ++ Sbjct: 326 FEILGDNYHKEEVVGLAWGDSRQIYV--GSSDLLQQPLFQEFLTKTALKT-----YDIKR 378 Query: 79 --VLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIA 131 VL + + +++P + + L + L + GK Sbjct: 379 AKVLLSHYGIELPAAA-FDARLAKYLLSTVEDNELVTIARLYGQTILPTDDEVYGKGAKR 437 Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191 + E R E E +L+ L EQ L ++ Sbjct: 438 ALPEQEQLFKHLARKIQVLLETEEPMQEQ--------LRAHDQLDLLLEMEQPLAFVLAK 489 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G V+ + + L QE+ L + ++L T LF + GL L Sbjct: 490 MEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPL 548 Query: 252 --EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T+ +T VL + P ++ R S+ + L EA+ +DG++ Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHT 607 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 ++TGR S QN+P +R Sbjct: 608 RYVQD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRK 641 Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQV 424 + L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + V Sbjct: 642 AFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDV 701 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T + R K + G++ A+ Sbjct: 702 TPNDRRNAKAVNF--------------GVVYGISDFGLAN-------------------- 727 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 A + + + ++ + + + Sbjct: 728 ----------NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARD-------------- 763 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 + R D+ + R +Q Sbjct: 764 ------------KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQG 802 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSW 657 + DIL M+N +A ++L VHDEIV E P+ + ++ M + Sbjct: 803 SAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRKLVKETMETAIEL 862 Query: 658 AKGLPLKAE 666 A +PL A+ Sbjct: 863 A--VPLVAD 869 >gi|297559935|ref|YP_003678909.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844383|gb|ADH66403.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 928 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 98/663 (14%), Positives = 181/663 (27%), Gaps = 132/663 (19%) Query: 28 VCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 V A D DP + L + L + H L A Sbjct: 376 GRVDALAISVPSGDAVFVDPTALDPADTEALADFLADPRRPKAVHEYKGALLALGAH-GW 434 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVG----EALKLSSQKMEEGKELIARFCKGETHECL 142 ++ T + A + + L ++ G +L GE Sbjct: 435 EL-GGVVSDTALAAYLVQPGQRRFDLADLCRKYLGRELEEDSSGDQL-TLDLGGEDGAGS 492 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 ++ G ++ + L E L + + G D Sbjct: 493 GRQHLLAV---RASATRDLAGVLSAELDKRGGTHLLHEVELPLVDVLARLERAGIAADRP 549 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TC 259 L + + + ++L+ LF + GL +T T Sbjct: 550 YLEELQGEFAAAGRVAVERAHEIVG-REFNLGSPKQLQQVLFEDLGLPRTKKIKTGYTTD 608 Query: 260 QRVLSSNKKLTP-QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 L+ T + V + ++ + L++ + DGR+ T A+ TGR Sbjct: 609 ADALAWLASQTDNELPAVLLHHRDQTKLRTT-VEGLIKTVADDGRIHTTFNQTVAA-TGR 666 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LV 377 S QN+P + +R + EG + L+ Sbjct: 667 LSSTDPNLQNIPVRTDVGRR-------------------------IRRAFVVGEGYEELL 701 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++GEQ + AF +G D + A+ F+V QV + R+ K M Sbjct: 702 TADYSQIELRIMAHLSGEQALIDAFNSGYDFHAQMAAQIFDVEVEQVDGEARSRIKAMSY 761 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 L GL+ + Sbjct: 762 GL--------------AYGLSAYGLSQQ------------------------------LG 777 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 +R+ + + + V + N + + + Sbjct: 778 ITPEESKRLMEDYFAEFGGVRDYLNAMVEEARR--------------------------V 811 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 GR D+ ++ R +Q + DI+ M+ Sbjct: 812 GYTETILGRRRYLPDLTSDN---RQRREMAERMALNAP------IQGSAADIIKVAMLRV 862 Query: 618 TKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYES 670 A ++L VHDE+V E + + M+S + +PL Sbjct: 863 DAALTEGGLTSRVLLQVHDELVVEVAPGERAEVENIVAREMSSA--YDLRVPLAVSVGSG 920 Query: 671 KRY 673 + + Sbjct: 921 QNW 923 >gi|213965256|ref|ZP_03393453.1| DNA polymerase I [Corynebacterium amycolatum SK46] gi|213952108|gb|EEB63493.1| DNA polymerase I [Corynebacterium amycolatum SK46] Length = 881 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 95/639 (14%), Positives = 183/639 (28%), Gaps = 150/639 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 L+E L D + H+S VL + ++ + T + A +L Sbjct: 368 DALREWLA-GDHPKLVHDSKSAMHVLWNY-DFEL-VGVIHDTFLAAYLLRPSQRSYSLDN 424 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH---REAWRLFGEYCK-GDVTV 167 V + Q + + + G Y D+ V Sbjct: 425 VVQRH--LGQTLSQADGQMTLLDGPAEDASHVAAVIDLAERLAVELDEAGLYSVYADLEV 482 Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + + G VDV L + + +L Sbjct: 483 PLA----------------PVLGRMERAGIAVDVDALEELRKQAQAATDDAESAARNLVD 526 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK--LTPQAIQVFNNRMR 282 + ++L+ LF + G+ T+ +T + + K P + R Sbjct: 527 KPELNLGSPKQLQEVLFDQLGMPKTKKTKTGYSTAAKEIEGLAKVNPHPFLDYLLKFR-E 585 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + + + L++A+ DGR+ T A+ TGR S QN+P + Sbjct: 586 SQKMKST-VEGLIKAVADDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRTEFGRR---- 639 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKA 401 +R + EG +L+ AD + IE RV+A ++ + ++A Sbjct: 640 ---------------------IREAFVVGEGYAQLITADYSQIEMRVMAHLSQDPGLIEA 678 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 + GEDL+ ++ F V +VT + R K M L GL+ Sbjct: 679 YRQGEDLHNYVGSKVFGVGIDEVTPELRRRVKAMSYGL--------------AYGLSAFG 724 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 A + +++ + + ++ V + Sbjct: 725 LAQQLDI------------------------------PQREAKKLMEDYFERFGGVRDYL 754 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 +++ + + + R ++ + Sbjct: 755 HKVVEQARK--------------------------DGFTATMFDRRRYLPELNADN---R 785 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635 R + +Q + DI+ M+ A ++L VHDE+V E Sbjct: 786 IARDNAERAA------LNSPIQGSAADIIKIAMLRVDDALRRGGLRSRVLLQVHDELVVE 839 Query: 636 TPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 D +E L+ M S +PL + Sbjct: 840 VADGEEAAIKELLHREMDSAAELL--VPLDVSIGAGVNW 876 >gi|46578911|ref|YP_009719.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough] gi|46448323|gb|AAS94978.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough] gi|311232769|gb|ADP85623.1| DNA polymerase I [Desulfovibrio vulgaris RCH1] Length = 1015 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 111/659 (16%), Positives = 186/659 (28%), Gaps = 157/659 (23%) Query: 31 ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL--DI 88 + FA V+ P Q L L + + + L + DI Sbjct: 496 VAFAVAVAGCEVQY----SGP--VQGLARHLASAKRI-----ATPDVKALLRSHAIWRDI 544 Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 P RW + A G L + Sbjct: 545 PGDRWFDLGLAAYLLDPEE------RDYGWPRLAARWGDMLDRSTDNPGLLALEMAQGM- 597 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 G + + E L + + + G VD Sbjct: 598 --------AGRLAGASLDTLMR---------TLELPLVPVLADMEEAGIAVDRTAFAAFL 640 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLS 264 V E ++ QE+ G + R ++L LF GL T TT Q L Sbjct: 641 DEVQHELDRITQEVYKAAGGQ-FNIRSAQQLGELLFGTLGLPTVGKTRGGQATTSQDALE 699 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 P + + R + + L L + +++ GR+ T L A+ TGR S Sbjct: 700 KLSGRHPVVDLILDFR-KLEKLRSTYLEPLPKLVDAAGRIHSTFNQL-ATATGRLSSSNP 757 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P +RSC A+EG LV AD + I Sbjct: 758 NLQNIPARGDLGRR-------------------------MRSCFTAAEGNLLVSADYSQI 792 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RVLA M+ + L AF G D++ T ++ AP VT DQR K + Sbjct: 793 ELRVLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTPDQRRNAKTINF------- 845 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 G+ + E + Sbjct: 846 -------GLIYGMGPQ------------------------------KLGQELRITVNEAK 868 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + + + + + ++ + A + + + Sbjct: 869 QFIERYFSRLQHLRNFYDNVEAAARE--------------------------QGHVTTLA 902 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----- 619 GR + ++ + + Q R+ ++Q + DI+ M+ A Sbjct: 903 GRRRLLPEMHSENT---QLRSQARRQAI------NTLIQGSAADIIKLAMLAAHDDPVLH 953 Query: 620 -AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS--WAKGLPLKAEGYESKRYR 674 ++L VHDE++ E P+ + A L LM+ +PL + K + Sbjct: 954 GLKARLILQVHDELMLEVPEANAQAAGERLALLMSEVRPGGVTLDVPLLVDWGAGKDWG 1012 >gi|239626380|ref|ZP_04669411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516526|gb|EEQ56392.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 920 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 88/603 (14%), Positives = 163/603 (27%), Gaps = 135/603 (22%) Query: 89 PIHRWICTLVLARSNGL---PSALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYD 144 V + L L+ + Sbjct: 431 DTAPVYDGGVAGYLLNPLKDTYGYDDLARDYLGLTVPS--------RADLLAKADLGDAL 482 Query: 145 RNKPNHREAWRLFGEYC--KGDVTVTREIFKRLEPLSSKEQELWYL--DQTINDRGYCVD 200 N+ + Y K +TR++ KE E+ + + G V+ Sbjct: 483 WNEDARAVTCACYMAYTVWKAAAPLTRQLKDTGMYALYKEIEMPLIYSLYHMEQEGVKVE 542 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 A + V L+QE+ T + ++L LF + + T+ + Sbjct: 543 RAELEEYGNRLKVRIVDLEQEIYRDTG-KEFNINSPKQLGEILFEDMKMPGGKKTKTGYS 601 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL P ++ + R ++ L + DGR+ G + TG Sbjct: 602 TAADVLDKLAPDYPVVQKILDYRQ-LTKLNSTYAEGLAAYIGEDGRIHGKFNQ-TITATG 659 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P E +R + EG V Sbjct: 660 RISSTEPNLQNIPVRMELGRE-------------------------IRKVFVPKEGCVFV 694 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R+LA M+G++ ++A+ + +D++ T + F+V +VT QR K + Sbjct: 695 DADYSQIELRILAHMSGDERLIEAYRSAQDIHAITASEVFHVPLGEVTPLQRRNAKAVNF 754 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 G++ + + Sbjct: 755 --------------GIVYGIS------------------------------AFGLSEDLS 770 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + + V + L Q E G Sbjct: 771 ISRKEAVEYINKYFETYPGVKIFLDGL---VSQGKEQGYVTTLY---------------- 811 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 GR ++ + R +Q + DI+ M+ Sbjct: 812 -------GRRRPIPELKSANFMQRQF---GERVAMNSP------IQGSAADIMKIAMIAV 855 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYES 670 + IVL +HDE++ ET + + + M + L+ E Sbjct: 856 DRELRARNLKSRIVLQIHDELLIETAEDEIGTVKEILVDKMKHAAE--LKVSLEVEAEVG 913 Query: 671 KRY 673 + + Sbjct: 914 RSW 916 >gi|255281096|ref|ZP_05345651.1| DNA polymerase I [Bryantella formatexigens DSM 14469] gi|255268544|gb|EET61749.1| DNA polymerase I [Bryantella formatexigens DSM 14469] Length = 880 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 87/658 (13%), Positives = 184/658 (27%), Gaps = 138/658 (20%) Query: 18 KCGICKYAEDVCVILFAFGFDDHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSY 74 + G E + A D+ V + + + + + L+ + + Sbjct: 321 EIGFSLLTEQGELFGLALAPDEEHVYFIKKEGFLTEGYLTEKCLQLLQEGRMAYTI-DLK 379 Query: 75 FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134 + L+ + + + A ++ L+ + Sbjct: 380 EQLAFLR--AGIS-DRAKIADAAIGAYLLNPLKGQYPC-------EDIAKDYASLMIKGR 429 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-----EIFKRLEPLSSKEQELWYL- 188 + + E + Y ++ + ++ E+ + Sbjct: 430 AELFGKAPLAKVMEEQPEELAQYACYLAYTAKAAMPVILQKLRENQMLELFRDMEMPLVY 489 Query: 189 -DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + G V+ + + V +L+QE+ + ++L LF + Sbjct: 490 TLYDMQEVGIRVNAQELKAYGEELYVRIVELEQEIYRDAG-EEFNINSPKQLGVILFEKL 548 Query: 248 GLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 L T++ T VL ++ R ++ + L + +DGR+ Sbjct: 549 KLPGAKKTKSGFSTAADVLEKLAPDYAIVAKILEYRQ-LAKLKSTYADGLAGFIAADGRI 607 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 GT + TGR S QN+P + + Sbjct: 608 HGTFNQ-TITATGRISSTDPNLQNIPVRTELGR-------------------------LL 641 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R IA EG L+ AD + IE RVLA M+G++ + AF D++ T ++ F++ +V Sbjct: 642 RKVFIAKEGYVLIDADYSQIELRVLAAMSGDETLIAAFRDNADIHRLTASQVFHIPFDEV 701 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T QR K + G++ + + Sbjct: 702 TPLQRRNAKAVNF--------------GIVYGISAFGLSEDLHI---------------- 731 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + Q + +V + L A ++ E G A Sbjct: 732 --------------SVKEAGEYIDKYFQTYPKVKDF---LDNAVKEAKEKGYAETL---- 770 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 R ++ + + R +Q Sbjct: 771 -------------------FHRRRPVPELKSGNFMQRSF---GERVAMNSP------IQG 802 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNP 655 + DI+ M+ + ++L +HDE++ E ++ L M + Sbjct: 803 TAADIIKIAMIRVNERLRAEQFQSRLILQIHDELLIEAEPSEVEAVKELLAQEMVNAV 860 >gi|290961250|ref|YP_003492432.1| DNA polymerase I [Streptomyces scabiei 87.22] gi|260650776|emb|CBG73893.1| DNA polymerase I [Streptomyces scabiei 87.22] Length = 908 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 101/680 (14%), Positives = 181/680 (26%), Gaps = 156/680 (22%) Query: 29 CVILFA----FGFDDHPV-------------ELWDCVHDPVMPQVLKEALENTDVTIVAH 71 ++ A + V D L + V H Sbjct: 345 EILGVATVDTWALGAGSVAEIALAAAGGAAAWFDPTALDEADETAWAAWLADPARPKVFH 404 Query: 72 NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELI 130 N+ V + T + A + L+ L Sbjct: 405 NAKSAMRVFAEH-GWTVEGVGM-DTALAAYLVKPGRRSFDLDALTLEY----------LG 452 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGE-YCKGDVTVTR--EIFKRLEPLS--SKEQEL 185 T + EA L + D+ + + E Sbjct: 453 RELAPAATADGQLAFGADEGAEADALMVQARAILDLGAAFGERLEEVGAAGLLRDVELPT 512 Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 L + G D + Q+ + +E + + ++L+ LF Sbjct: 513 SALLARMERHGIAADRPHLEAMEQMFAGAVQQAVKEAHAAAGH-EFNLGSPKQLQEVLFG 571 Query: 246 ETGLHLEDLTET---TCQRVLSSNKKLTP-QAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 E GL T+T T L+ T + + ++ V + L++ + +D Sbjct: 572 ELGLPKTKRTKTGYTTDADALAWLAGQTDNELPVIMLRHREQAKLRVT-VEGLIKTIAAD 630 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 GR+ + A+ TGR S QN+P + Sbjct: 631 GRIHTSFSQTVAA-TGRLSSTDPNLQNVPVRTDEGRA----------------------- 666 Query: 362 DCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R + EG + L+ AD + IE RV+A ++ ++ ++AF +GEDL+ T A+ F V Sbjct: 667 --IRRGFVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAAAQVFGVE 724 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 + V + R K M L GL+ + + + Sbjct: 725 QSAVDAEMRRKIKAMSYGL--------------AYGLSAFGLSQQLNIEAG--------- 761 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + A+ ++ V + + +T Sbjct: 762 ---------------------EARALIDAYFERFGGVRDYLRRVVDEARET--------- 791 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 GR D+ ++ R Sbjct: 792 -----------------GYTATLFGRRRYLPDLNSDN---RQRREAAERMALNAP----- 826 Query: 601 IVQAVSRDILAEGMMNA----TKAG--YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTS 653 +Q + DI+ M+N +AG ++L VHDEIV E + L M Sbjct: 827 -IQGTAADIVKIAMLNVGRALDEAGLASRMLLQVHDEIVLEIAPGERDRTEQLLRHEMAD 885 Query: 654 NPSWAKGLPLKAEGYESKRY 673 PL + Sbjct: 886 AVH--LRAPLDVSVGHGPDW 903 >gi|313887939|ref|ZP_07821618.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846105|gb|EFR33487.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 885 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 86/654 (13%), Positives = 185/654 (28%), Gaps = 141/654 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A D V+ ++ + LK+ +E+ V + ++ + +L +DI + Sbjct: 342 LAVKVKDSEVKFI--SYEEIDFDFLKKIMEDEKVEKLGYSLKEDIIILM-DLGIDIKNYS 398 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 + + ++ M K + E + K Sbjct: 399 -HDVEIAEYLLNSTQS------DYDINKISMAYFK---NGYLDLEDLLGKGAKKKTYADL 448 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVA 202 +Y + + + E L + ++ G D A Sbjct: 449 DKDDLFKYFAFVLNTIYRLEDLQKEKIDEEEMTSLYQDMELPLVEVLASMEYVGINTDEA 508 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + +++ + + L++E+ + ++L LF + + T+ +T Sbjct: 509 VLDEIDKQIIEKLKTLEEEIYDEAG-EKFNINSPKQLGVILFDKMDFPVIKKTKTGYSTS 567 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + ++ + R + S+ ++ L +N + + + TGR Sbjct: 568 ADVLEKLRGKGEIIDKILDYR-KFSKLKSTYIDGLKAVINKKTKRIHSRFMQTVTATGRI 626 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+P + +R +ASEG LV A Sbjct: 627 SSTDPNLQNIPIKTEEGR-------------------------LIRKAFLASEGGVLVDA 661 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA ++ ++ L AF+ G D++ T + F+V +V QR K + Sbjct: 662 DYSQIELRVLAALSDDKEMLDAFKHGLDIHRKTASEVFHVDYDEVDDRQRYEAKAVNF-- 719 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 G++ + Sbjct: 720 ------------GIVYGISDYGLSQ------------------------------NLNIP 737 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 A + + + + E + K+ Sbjct: 738 RKAAKEYIDNYLGHFVGIKDYMAEEIK--------------------------NGKDKGY 771 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + R ++ R +Q + DI+ M+ Sbjct: 772 VETIFKRRRYIPELNAKNF---NIRSFGERIA------LNTPIQGSAADIIKIAMVKVYN 822 Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666 +++ +HDE+V +T + + L LM ++ + L + Sbjct: 823 ELKKRNLKSKLIIQIHDELVVDTAEDEIEEVKELMKDLMENSVD--LNVKLSVD 874 >gi|323350933|ref|ZP_08086591.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66] gi|322122915|gb|EFX94621.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66] Length = 880 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 101/670 (15%), Positives = 189/670 (28%), Gaps = 157/670 (23%) Query: 28 VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERT 78 ++ + D + Q ++ +T +A ++ Sbjct: 326 FEILGDNYHKEEIVGLAWGDSRQIYV---GTSDLLQQ--PLFQD-FLTKIA--LKTYDLK 377 Query: 79 ---VLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELI 130 VL + + +++P+ + + L + L + GK Sbjct: 378 RTKVLLSHYGIELPVAS-FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK 436 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190 + E R E E +L+ L EQ L ++ Sbjct: 437 RALPEKEQLFEHLARKVQILLETEEPMQEQ--------LRAHNQLDLLLEMEQPLAFVLA 488 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G V+ + + L QE+ L + ++L T LF + GL Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLP 547 Query: 251 L--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L T+ +T VL + P ++ R S+ + L EA+ +DG++ Sbjct: 548 LEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIH 606 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 ++TGR S QN+P +R Sbjct: 607 TRYVQD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIR 640 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQ 423 + L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + Sbjct: 641 KAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAED 700 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + G++ A+ Sbjct: 701 VTPNDRRNAKAVNF--------------GVVYGISDFGLAN------------------- 727 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 A + + + ++ + + + Sbjct: 728 -----------NLGISRKAAKDYIETYFERFPGIKNYMETIVREARD------------- 763 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 + R D+ + R +Q Sbjct: 764 -------------KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQ 801 Query: 604 AVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPS 656 + DIL M+N +A ++L VHDEIV E P + L M + Sbjct: 802 GSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLVKETMEAAIK 861 Query: 657 WAKGLPLKAE 666 A +PL A+ Sbjct: 862 LA--VPLVAD 869 >gi|229062271|ref|ZP_04199592.1| DNA polymerase I [Bacillus cereus AH603] gi|228716999|gb|EEL68680.1| DNA polymerase I [Bacillus cereus AH603] Length = 838 Score = 287 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 99/656 (15%), Positives = 188/656 (28%), Gaps = 119/656 (18%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 + F + + + KE L N ++ ++ LK Sbjct: 290 HKADIQGFG--IQNENGCYFIPADVALKSDAFKEWLANGEMRKHTFDAKRAIVALKW-KG 346 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +DI L+ A K K ++ K + KG Sbjct: 347 VDIQGID-FDLLIAAYLLDPADTDKDFRAVAK--MKETHAVKSDEEVYGKGAKRAVPEQE 403 Query: 146 NKPNHREAWRLFGEYC-KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H A ++ Y K E ++ E + E L + + +G VD Sbjct: 404 VVAEH-VARKVHVLYDVKQIFEEELEKNEQYELFTELELPLARVLADMEVKGVTVDTERL 462 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + + +++QE+ L + ++L LF L + T+ +T Sbjct: 463 RNMGEELAGRLKEMEQEIYELAGT-EFNINSPKQLGVILFENLNLPVLKKTKTGYSTSAD 521 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL ++ + R + + L++ ++ D T ++TGR S Sbjct: 522 VLDKLMDHHAIIPKILHYRQ-LGKLNSTYIEGLLKVVHDDSSKIHTRFNQVLTQTGRLSS 580 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380 QN+P + +R I EG + AD Sbjct: 581 TEPNLQNIPIRLEEGRK-------------------------IRQAFIPSEEGWIMYAAD 615 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Sbjct: 616 YSQIELRVLAHIAKDEGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV 675 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A E + + + + ++ + Sbjct: 676 YGIS-----DYGLSQNLGITRKAAGEFIERYLESFPGVQEYMADIVKDAKQKGYVSTL-- 728 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +RR +P + + Sbjct: 729 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 748 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + K I+ D + Sbjct: 749 --------------AERTAMNTPIQG---SAADIIKKAMIIM----AD-------RLEEE 780 Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 781 GLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 834 >gi|322386365|ref|ZP_08059995.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100] gi|321269589|gb|EFX52519.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100] Length = 880 Score = 287 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 98/655 (14%), Positives = 187/655 (28%), Gaps = 139/655 (21%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85 ++ A+ ++ Q L + ++ VL + + Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQKFLTKTALKT-----YDLKRTKVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +++P + + +L Q + + + + KG Sbjct: 388 IELPAAS-FDARLAKYLL-STVEDNELATIARLYGQTILLTDDEV--YGKGAKRALPEQE 443 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 H + + +L+ L EQ L ++ + G V+ Sbjct: 444 QLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQ 503 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE---TTCQ 260 + + L QE+ L + ++L T LF + GL L T+ +T Sbjct: 504 GMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTGYSTAV 562 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL + P ++ R S+ + L EA+ SDG++ ++TGR S Sbjct: 563 DVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIASDGKIHTRYVQD-LTQTGRLS 620 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVA 379 QN+P +R + L+ + Sbjct: 621 SVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADSVLLSS 655 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELA 438 D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + R K + Sbjct: 656 DYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNF- 714 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ A+ Sbjct: 715 -------------GVVYGISDFGLAN------------------------------NLGI 731 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 A + + + ++ + + + Sbjct: 732 SRKAAKDYIQTYFERFPGIKNYMETIVREARD--------------------------KG 765 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 + R D+ + R +Q + DIL M+N Sbjct: 766 YVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVAMINLD 816 Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 +A ++L VHDEIV E P+ + L M + A +PL A+ Sbjct: 817 RALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869 >gi|58584982|ref|YP_198555.1| DNA polymerase I [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419298|gb|AAW71313.1| DNA polymerase I, PolA [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 849 Score = 287 bits (733), Expect = 6e-75, Method: Composition-based stats. Identities = 88/669 (13%), Positives = 182/669 (27%), Gaps = 152/669 (22%) Query: 18 KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER 77 K I + E+ + + +++ + D + AL + + + H+ Sbjct: 315 KVAIHCHFENNVLSKISLSYNEDNIFYIDQNRSQDALITINSALFSNGILKIIHD----- 369 Query: 78 TVLKACFNLDIP-----IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132 IP + ++++ S + + E + Sbjct: 370 ---TRETRKTIPTIEKVLGSVDDLMIMSYSLD-TGKHD-----HSIPNIIAHNLSENVET 420 Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192 F +LF Y + D + L + + Sbjct: 421 FSAKTLIAIHEK--LKQRLFKEKLFTIYERFD------------------KPLMKVIFNM 460 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G +++ L+ L+ ++ +L + ++L LF + GL+ + Sbjct: 461 EKNGILLNIHKLQELSDKFQQLIAVLENDIYNLAG-EKFNIASPKQLSDVLFNKMGLNKK 519 Query: 253 DLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 ++ T VL + + + S+ + L++ ++ T Sbjct: 520 KKLKSGSYSTNSVVLEELEIEGVEIASKILDWRHLSKLKSTYTDALIKQVDPLDGRIHTN 579 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + TGR S QN+P S+ +R Sbjct: 580 FSTTVTATGRLSSSSPNLQNIPIRSKEGN-------------------------LIRQTF 614 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA +G K++ AD + IE R+LA +A +AF G+D++ T + F V +Q Sbjct: 615 IAPKGYKIISADYSQIELRLLAHVANVTAFKEAFANGKDIHGITAGQVFGVQKDMEVDEQ 674 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 G++ A Sbjct: 675 LRR-------------KAKSINFGIMYGISQFGLAKR----------------------- 698 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + + + ++ Q Sbjct: 699 -------LGITIEEAAEYINYYFSCYPEIKVYMEKVVSTARQ------------------ 733 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + + GR +D+ N YL R Q + D Sbjct: 734 --------HGYVETLFGRRCFVKDINNTIPYLRQF---AERAAINAPL------QGTAAD 776 Query: 609 ILAEGMMNA-TKAGY-DIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKA 665 I+ M+ + I+L VHDE++ E + + A ++ +M + +PL+ Sbjct: 777 IIKCAMIQLFDQLKAGKIILQVHDELLVEVENEKVQETAKLMKDVMENIVK--ISIPLEV 834 Query: 666 EGYESKRYR 674 E S + Sbjct: 835 EVKISDNWG 843 >gi|120603488|ref|YP_967888.1| DNA polymerase I [Desulfovibrio vulgaris DP4] gi|120563717|gb|ABM29461.1| DNA polymerase I [Desulfovibrio vulgaris DP4] Length = 1015 Score = 287 bits (733), Expect = 6e-75, Method: Composition-based stats. Identities = 111/659 (16%), Positives = 184/659 (27%), Gaps = 157/659 (23%) Query: 31 ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA--CFNLDI 88 + FA V+ P Q L L + + + L DI Sbjct: 496 VAFAVAVAGCEVQY----SGP--VQGLARHLASAKRI-----ATPDVKALLRSHALWRDI 544 Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 P RW + A G L + Sbjct: 545 PGDRWFDLGLAAYLLDPEE------RDYGWPRLAARWGDMLDRSTDNPGLLALEMAQGM- 597 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 G + + E L + + + G VD Sbjct: 598 --------AGRLAGASLDTLMR---------TLELPLVPVLADMEEAGIAVDRTAFAAFL 640 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLS 264 V E ++ QE+ G + R ++L LF GL T TT Q L Sbjct: 641 DEVQHELDRITQEVYKAAGGQ-FNIRSAQQLGELLFGTLGLPTVGKTRGGQATTSQDALE 699 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 P + + R + + L L + ++ GR+ T L A+ TGR S Sbjct: 700 KLSGRHPVVDLILDFR-KLEKLRSTYLEPLPKLVDDAGRIHSTFNQL-ATATGRLSSSNP 757 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P +RSC A+EG LV AD + I Sbjct: 758 NLQNIPARGDLGRR-------------------------MRSCFTAAEGNLLVSADYSQI 792 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RVLA M+ + L AF G D++ T ++ AP VT DQR K + Sbjct: 793 ELRVLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTPDQRRNAKTINF------- 845 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 G+ + E + Sbjct: 846 -------GLIYGMGPQ------------------------------KLGQELRITVNEAK 868 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + + + + + ++ + A + + + Sbjct: 869 QFIERYFSRLQHLRNFYDNVEAAARE--------------------------QGHVTTLA 902 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----- 619 GR + ++ + + Q R+ ++Q + DI+ M+ A Sbjct: 903 GRRRLLPEMHSENT---QLRSQARRQAI------NTLIQGSAADIIKLAMLAAHDDPVLH 953 Query: 620 -AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS--WAKGLPLKAEGYESKRYR 674 ++L VHDE++ E P+ + A L LM+ +PL + K + Sbjct: 954 GLKARLILQVHDELMLEVPEANAQAAGERLALLMSEVRPGGVTLDVPLLVDWGAGKDWG 1012 >gi|160914226|ref|ZP_02076447.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991] gi|158433853|gb|EDP12142.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991] Length = 861 Score = 287 bits (733), Expect = 7e-75, Method: Composition-based stats. Identities = 89/661 (13%), Positives = 186/661 (28%), Gaps = 140/661 (21%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 D + FA ++ E +L+ + + +++ Sbjct: 323 DATLYGFAIAHGNN-CEYISLEDAKNDTALLEYIHTDNG--KIVYDAKNVYHAWHRNHIA 379 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 +P+HR ++ A + K+ E K E + Sbjct: 380 FVPVHR--DVMLEAFLLDGMIS----------DYDKLAE-KYAFDCTLSKEDVFGKKGKP 426 Query: 147 KPNHREAWRLFGEYCKGD-VTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCV 199 K E + C + + +++F LE + E + + + G Sbjct: 427 KLVVEEDAAAYAMQCAENLANIEQQLFDELEQKDMKELYDTIEMPVVEVLYAMEKEGVHT 486 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259 V + + + L+ ++ + ++L L+ E GL +T Sbjct: 487 SVETLQEIAEATGKKIEALNAQIYEYAGM-EFNINSPKQLAVVLYDELGLPCGKKR-STG 544 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL K + P + R + + L + + DG++ + ++TGR Sbjct: 545 ADVLEKLKPVHPIISLLLEQR-KYQKIYSTYAVGLSKHILKDGKIHTIFNQIQ-TQTGRL 602 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+ + +R +AS L+ A Sbjct: 603 SSSEPNLQNISVRDEEGK-------------------------VIRKAFVASPQHTLMSA 637 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R+LA MA E+ ++AF G D++ T + F+V V + R K + Sbjct: 638 DYSQIELRMLAHMANEKTMIQAFNQGIDIHNQTAMQIFDVDHDHVDSNMRRSAKTVNF-- 695 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 G + + Sbjct: 696 ------------GIVYGQSDFGLSEQ------------------------------LGIT 713 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 +R + + + ++ E+ N Sbjct: 714 MKEAKRFIDKYFASYPNIKTFMDDTIAFCEE--------------------------NGY 747 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT- 618 + GR +++ + + + R +Q + D++ M++ Sbjct: 748 VKTMFGRRRYIKEINDKNYMMREFGK---RAAMNAP------IQGSAADLIKLAMVHIYQ 798 Query: 619 -----KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKR 672 K ++L +HDE++ + D + + M +PL AE K Sbjct: 799 TMKEKKVKSRMILQIHDELIFDVCDDELDTMKDIVEQGMQQAMQ--LRVPLIAEASFGKT 856 Query: 673 Y 673 + Sbjct: 857 W 857 >gi|313906066|ref|ZP_07839418.1| DNA polymerase I [Eubacterium cellulosolvens 6] gi|313469111|gb|EFR64461.1| DNA polymerase I [Eubacterium cellulosolvens 6] Length = 885 Score = 287 bits (733), Expect = 7e-75, Method: Composition-based stats. Identities = 80/684 (11%), Positives = 172/684 (25%), Gaps = 159/684 (23%) Query: 19 CGICKYAEDVCVILFAFGFDDHPVELWDCV---HDPVMPQVLKEALENTDVTIVAHNSYF 75 G ++ + A F + L E E Sbjct: 328 AGFDAQKQESYIHGVAVSFSAEDTAYVPMSGFVSGRYLKVSLMELAEAG----------- 376 Query: 76 ERTVLKACFNLDIP------IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129 + + + + A + + + K++ Sbjct: 377 -LAIWTYGLKEQLRAVPYSRKTKISDVAIAAYLLDP------LASDYPFDTLAAQYVKDV 429 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI----------FKRLEPLS 179 + + + Y + Sbjct: 430 LILSAEEVLGT---KKEVSWFEVPEETAAMYAGEIAYTALSCGPGLVEKLEAQGMRKLYD 486 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L Y + + G V T + + +L+ + + ++L Sbjct: 487 EVEMPLVYTLCHMEEAGIRVLPDELETYGENLKEGIARLETSIYEAAG-EKFNINSPKQL 545 Query: 240 KTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L T+ +T VL P + R ++ + L Sbjct: 546 GVILFEKMQLPGGKKTKTGYSTAADVLEKLAVDVPFVADILEYRQ-LTKLKSTYADGLAA 604 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + +DGR+ T + + TGR S QN+P Sbjct: 605 CIAADGRIHTTFKQ-TITATGRISSTEPNLQNIPTRIELGR------------------- 644 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R C + +G V AD + IE RVLA ++G++ ++A+ ED++ T ++ Sbjct: 645 ------QIRKCFVPQDGFVFVDADYSQIELRVLASLSGDEKLIEAYRDAEDIHAITASQV 698 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F+V ++VT R K + G++ Sbjct: 699 FHVPLSEVTPLMRRNAKAVNF--------------GIVYGIS------------------ 726 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 + + + ++ + + + L + ++ Sbjct: 727 ------------AHGLSEDLNISRKEAQEYIDSYYEAYPGIRGYLESLVETAKK------ 768 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 GR ++ + R Sbjct: 769 --------------------KEYSETYYGRRRPMPELSSGNFMQRQF---GERVAKNAP- 804 Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YH 649 +Q + DI+ M + ++L VHDE++ ET + + + Sbjct: 805 -----IQGTAADIIKIAMNRVDQRLQEEGLKSRLLLQVHDELLLETAEDELERVREILRE 859 Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673 M A + + + ++ K + Sbjct: 860 EMIGATDLAVSM--EIDMHDGKNW 881 >gi|260892910|ref|YP_003239007.1| DNA polymerase I [Ammonifex degensii KC4] gi|260865051|gb|ACX52157.1| DNA polymerase I [Ammonifex degensii KC4] Length = 868 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 97/649 (14%), Positives = 180/649 (27%), Gaps = 139/649 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A V + P + + LE + +++ + L A Sbjct: 344 LALCLGGEKVF---LLEGPEVLKSFFRLLEEKGGLVSTYDAK---SCLHALEPYGFKPEM 397 Query: 93 W-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 L+ A + + A + + + G EL + + + Sbjct: 398 IGFDVLLAAYLVNPAANNELGAIAFEHAGFMLSPGAELPEKAQAIYQLTPILKSKI---K 454 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 + + Y L + + G V +L++ + Sbjct: 455 LQEQEYLYYSVE-------------------LPLAAVLADMEKVGVKVSEERLRSLSKEL 495 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK 268 + +L +E+ L + +L LF + GL T+ +T VL + Sbjct: 496 GEQLAQLSEEIYKLAG-ERFNLNSPRQLGYILFEKLGLKPVKKTKTGYSTDASVLEKLAE 554 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQ 327 +V R ++ + L E ++ GRL T G + TGR + Q Sbjct: 555 -HEIVAKVLVYRQ-LAKLKSTYTDALPELIDPATGRLHTTFLQAG-TATGRLASAEPNLQ 611 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEA 386 N+P + +R +A L+ AD + IE Sbjct: 612 NIPVR-------------------------DSLGRRIRQAFVAEGPDYVLLSADYSQIEL 646 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA ++ + +AF GED++ T A F V+P +VT + RA KV+ + Y Sbjct: 647 RVLAHLSEDPGLCEAFVKGEDIHARTAAEIFGVSPQEVTPEMRAKAKVVNFGIVYGMS-- 704 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 + L + + + F + E + R Sbjct: 705 ---DYGLSQELKIEPGEAHEYIERYFRRYPRVKQFIERVIAQAREKGYVTTILNR--RRY 759 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + +L + T G A K+ V Sbjct: 760 IPEILSSNRNQRQLG---ERLAINTTIQGSAADLIKKAMV-------------------- 796 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 D+ Q M+ L Sbjct: 797 -----DIHRQLKG-----------------------QG-----FKCRMI----------L 813 Query: 627 TVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 VHDE++ E P + + ++ M + +P+KA ++ Sbjct: 814 QVHDELLFEVPKEELEKVAPIIKSTMEQALPF--KVPIKANLKVGPNWQ 860 >gi|108804847|ref|YP_644784.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941] gi|108766090|gb|ABG04972.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941] Length = 843 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 94/601 (15%), Positives = 174/601 (28%), Gaps = 138/601 (22%) Query: 85 NLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 + + T + L A+ +S + ++ + Sbjct: 362 GVGVRGAH-FDTYLAGYLAKPGLGSYDLDALATERGISDVEASHADPVVREAARRAALVR 420 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 E L + + G VD Sbjct: 421 ALAPRL------------------DAELREMGLSRLYYEVELPLADVLAEMERVGMPVDA 462 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL---EDLTETT 258 + + ++ +L++ + + ++L LF E GL +T Sbjct: 463 RTLEEVGREIERRIAELEEAIFEDVGHP-FNIGSPKQLSEVLFEELGLPPVRRTKTGYST 521 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 +VL P A ++ ++ + L++ + DGR+ T + TGR Sbjct: 522 DAKVLQQLALEHPIAERII-AWRELAKLKGTYVEGLLKLVGEDGRIHTT-LNQTTTATGR 579 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378 S QN+P + + +R AS G+ LVV Sbjct: 580 ISSDSPNLQNIPVRTETGMR-------------------------IRDAFTASPGRLLVV 614 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R+LA M+ E ++AF+ GED++ T A F+V P VT + R K++ Sbjct: 615 ADYSQIELRILAHMSREPALVEAFKNGEDIHTRTAAEVFDVRPESVTPELRRRAKMVNFG 674 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y Sbjct: 675 ILYGISGYGLAT-------------------------------------------RLGNV 691 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +R + + ++H RV+E + ++ + E G A Sbjct: 692 HPAEADRYIQRYFERHPRVTEF---IRKSLAEAEELGYATTL------------------ 730 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 GR ++ N + R VQ + DI+ M++ Sbjct: 731 -----FGRRRYVPELRNKN---KNVRKLGERIAFNAR------VQGSAADIIKVAMVDLA 776 Query: 619 KA----GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 G D+++ VHDE+V + + L M + + PL+ E +R+ Sbjct: 777 PRLGPLGADMLMQVHDELVFDVDRDRVEEVAALAAERMVAA--YDLDPPLEVEVKAGERW 834 Query: 674 R 674 Sbjct: 835 G 835 >gi|255658136|ref|ZP_05403545.1| DNA polymerase I [Mitsuokella multacida DSM 20544] gi|260849443|gb|EEX69450.1| DNA polymerase I [Mitsuokella multacida DSM 20544] Length = 878 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 94/650 (14%), Positives = 177/650 (27%), Gaps = 150/650 (23%) Query: 38 DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICT 96 D D L LE+ V LK + + Sbjct: 361 DAEKAGFVP--KDSAAFPALLSLLESEKQVAVF--------GLKRYDQAGVRGQNDFFDI 410 Query: 97 LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR-FCKGETHECLYDRNKPNHREAWR 155 + A + L + +E+ F + + Sbjct: 411 ELAAYLLEPERS------KYALPELSQKYLQEMAPESFADERSRAVWEAKTIS------- 457 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 Y + E L L + + G V+ A + V Sbjct: 458 --RLYPLLGAKLEEEELTHLMKTVE--LPLVEVLAAMEQNGVYVNRAHLAEKTEEVADRL 513 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272 ++Q + + + ++L T LF E L + T+ +T VL S + P Sbjct: 514 QTIEQSIYEMAGHT-FNLNSPKQLGTVLFEELDLPVRKKTKTGYSTNAEVLESLRLEHPI 572 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 Q+ R+ S+ L+ + + +D GR+ + + TGR S QN+P Sbjct: 573 VEQILAYRL-WSKLKSTYLDGITGLIRTDTGRVHTSFNQ-TVTATGRLSSSDPNLQNIPV 630 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLA 390 + +R+ EG L+ AD + IE R+LA Sbjct: 631 RTEEGR-------------------------MIRALFEPGEGYDYLLSADYSQIELRLLA 665 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 M+G++ + F+ G+D++ T A F + +VT + R K + Sbjct: 666 HMSGDENFIDVFKRGQDIHARTAAEVFGIPLEEVTPELRRHAKAVNF------------- 712 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 G++ A + Sbjct: 713 -GIVYGISDFGL------------------------------ARNLHISRKEAGDYISRY 741 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 +++ V +++ + E G GR Sbjct: 742 FERYPGVRAFMDKV---VAEAHETGYVTTM-----------------------FGRRREL 775 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDI 624 + + R +Q + D++ M+ A I Sbjct: 776 PAIKSRNF---NQRMLAERMAMNTP------IQGTAADVIKLAMIAAYHRLKEAGVKSRI 826 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 +L VHDE+V E +++ + M A +PL + + + + Sbjct: 827 LLQVHDELVLEVVESELDVVQAILRESMEHVV--ALSVPLIIDIHWGRNW 874 >gi|320527462|ref|ZP_08028643.1| DNA-directed DNA polymerase [Solobacterium moorei F0204] gi|320132175|gb|EFW24724.1| DNA-directed DNA polymerase [Solobacterium moorei F0204] Length = 876 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 84/659 (12%), Positives = 181/659 (27%), Gaps = 135/659 (20%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 + FA ++ V L + + L L Sbjct: 337 HATINGFAL-YNGKQAVYISLVDAKK-DSDLLAYFSSDMPHKYGFDVKRNLH-LAENEGL 393 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVG---EALKLSSQKMEEGKELIARFCKGETHECLY 143 + H ++ A +L E + +++ + K Sbjct: 394 TLNFH--DDMMLAASLVDS--SLTTTAKIIERYGFEN--TVSYEDVYGKPTKPNLIIDEE 447 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDV 201 + A +F Y +T ++ + E E+ + + G D+ Sbjct: 448 KQCMYACAFARNIFRLYA----EITPKLQEYKMEKLYYEMEMPLTTVLYHMEREGIRCDI 503 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261 + + + ++ +E+ L + ++L LF + GL +T Sbjct: 504 DILDRIATETMAKISEAQKEIYVLAA-KEFNINSPKQLAEVLFDDLGLPTGKKR-STAAG 561 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 L + +P + R + S+ L + + DG++ A++TGR S Sbjct: 562 ELEKLQGKSPIIDYILEYR-KLSKIYSTYAEGLKKYIQQDGKIHTIYNQS-ATQTGRLSS 619 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 QN+ +E +R + G L+ +D Sbjct: 620 SEPNLQNISVRDEQGKE-------------------------IRKAFLPENGCVLISSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA MA E ++AF+ G D++ T F+ ++T R K + Sbjct: 655 HQIELRMLAHMANETSLIEAFKEGIDIHTKTAMDVFHKPQDEITAQDRRSAKTVNF---- 710 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 G++ + + + Sbjct: 711 ----------GIVYGISDFGLSEQLGVSRY------------------------------ 730 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 + + + ++ +++ + E G Sbjct: 731 EAHDFIERYYAAYPKIRIYMDQI---VKDCEEKGYVETL--------------------- 766 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT--- 618 GR ++ + + R +Q + D++ M++ Sbjct: 767 --CGRRREIPEIHDKNHATREFGK---RAAMNAP------IQGSAADLIKLAMIHIDQMM 815 Query: 619 ---KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 K ++L VHDE++ P + ++ M + +PL AE + Sbjct: 816 KDAKVKSKMILQVHDELIFNVPKEEVDVMTKLINDGMVNAMH--LQVPLTAECSIGSDW 872 >gi|328945225|gb|EGG39379.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1087] Length = 880 Score = 286 bits (732), Expect = 8e-75, Method: Composition-based stats. Identities = 97/662 (14%), Positives = 189/662 (28%), Gaps = 139/662 (20%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85 ++ A+ ++ Q L + ++ VL + + Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRAKVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +++P + + +L Q + + + + KG Sbjct: 388 IELPAAA-FDARLAKYLL-STVEDNELATIARLYGQTILPTDDEV--YGKGAKRALPEQE 443 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 H + + +L+ L EQ L ++ + G V+ Sbjct: 444 QLFEHLARKVQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQ 503 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE---TTCQ 260 + + L QE+ L + ++L T LF + GL L T+ +T Sbjct: 504 GMQAENEKTLESLTQEIYDLAGQK-FNINSPKQLGTILFEDMGLPLEYTKKTKTGYSTAV 562 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL + P ++ R S+ + L EA+ +DG++ ++TGR S Sbjct: 563 DVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQTGRLS 620 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVA 379 QN+P +R + L+ + Sbjct: 621 SVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADSVLLSS 655 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELA 438 D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + R K + Sbjct: 656 DYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNF- 714 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ A+ Sbjct: 715 -------------GVVYGISDFGLAN------------------------------NLGI 731 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 A + + + ++ + + + Sbjct: 732 SRKAAKDYIQTYFERFPGIKNYMETIVREARD--------------------------KG 765 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 + R D+ + R +Q + DIL M+N Sbjct: 766 YVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVAMINLD 816 Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 +A ++L VHDEIV E P+ + L M + A +PL A+ + Sbjct: 817 RALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVADENTGQ 874 Query: 672 RY 673 + Sbjct: 875 TW 876 >gi|315444483|ref|YP_004077362.1| DNA polymerase I [Mycobacterium sp. Spyr1] gi|315262786|gb|ADT99527.1| DNA polymerase I [Mycobacterium sp. Spyr1] Length = 908 Score = 286 bits (732), Expect = 8e-75, Method: Composition-based stats. Identities = 103/664 (15%), Positives = 197/664 (29%), Gaps = 156/664 (23%) Query: 39 DHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI--- 94 D + L L + V H + L D+ W Sbjct: 367 GGEGRYIDTTGLDPDDEKALASWLADPHVPKALHEAK-----LAIH---DLQGRGWTLAG 418 Query: 95 ---CTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 T + A AL + K + + L D + Sbjct: 419 VTSDTALAAYLVRPGQRSFALDDLSLRY---------LKRELRADNPEQQQLSLLDDSDG 469 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLDQTINDRGYCVDVA 202 +A + V + + + L + + E + + + G VD+ Sbjct: 470 VDDQAVQTLLLRASAVVDLADALDEELSRIDSSALLGNMELPVQRVLAELETAGIAVDLE 529 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TC 259 + L + + ++ + + ++L+ LF E + T+T T Sbjct: 530 MLSGLQSEFADQIRDAAEAAYAVIGKQI-NLGSPKQLQVVLFDELEMPKTKRTKTGYTTD 588 Query: 260 QRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 L S P + +R A+R V ++ L+ A+ SDGR+ T A+ TG Sbjct: 589 ADALQSLFDKTGHPFLQHLLAHR-DATRLKVT-VDGLLNAVASDGRIHTTFNQTIAA-TG 645 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KL 376 R S QN+P + + +R + +G +L Sbjct: 646 RLSSTEPNLQNIPIRTEAGRR-------------------------IRDAFVVGDGYGEL 680 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R++A ++ ++ ++AF TGEDL+ +R+F+V +VT + R K M Sbjct: 681 MTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMS 740 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 L GL+ + +K Sbjct: 741 YGL--------------AYGLSAYGLSQQLKI---------------------------- 758 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + + + V + ++ + Sbjct: 759 --STEEAKEQMEQYFARFGGVRDYLRDVVDQARK-------------------------- 790 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 + GR ++ ++ R +Q + DI+ M+N Sbjct: 791 DGYTSTVFGRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAADIIKVAMIN 841 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 +A +L VHDE++ E D + L M S +A +PL+ Sbjct: 842 VDQAIKDAGLKSRTLLQVHDELLFEVADGERDTLDALVREHMGSA--YALDVPLEVSVGF 899 Query: 670 SKRY 673 + + Sbjct: 900 GRSW 903 >gi|228477065|ref|ZP_04061703.1| DNA polymerase I [Streptococcus salivarius SK126] gi|228251084|gb|EEK10255.1| DNA polymerase I [Streptococcus salivarius SK126] Length = 879 Score = 286 bits (732), Expect = 8e-75, Method: Composition-based stats. Identities = 100/664 (15%), Positives = 195/664 (29%), Gaps = 145/664 (21%) Query: 28 VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ F + + D + + + AL + V N ++ Sbjct: 325 FEILGDNYHTEPIIGFAWGNDKQIYASTDTDLLKSEAFQAAL-SKAV-----NI-YDFKR 377 Query: 79 --VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136 VL + +D+P + + +L + E E++ + KG Sbjct: 378 SKVLLSHLGIDLPTAN-FDARLAKYLL-STVEDNELSTIARLYTDLPLETDEVV--YGKG 433 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 +H + K + + E L E L + + G Sbjct: 434 AKRAVPEKEVLLSHLAKKVKVLQVAKQVMLEKLAEHGQSELLFDMELPLANVLAKMEIAG 493 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDL 254 V + + V KL QE+ + + ++L LF + GL L Sbjct: 494 IKVKGQTLNEMAVENQVVIDKLTQEIYEMAG-EEFNINSPKQLGVILFEKMGLPLEYTKK 552 Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 T+ +T VL + P ++ R ++ + L + + DG++ Sbjct: 553 TKTGYSTAVDVLERLAPIAPIVAKILEYRQ-ITKLQSTYVLGLQDYILEDGKIHTRYVQD 611 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 ++TGR S QN+P +R + S Sbjct: 612 -LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPS 645 Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQR 429 E L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P VT + R Sbjct: 646 TEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDR 705 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + G++ ++ Sbjct: 706 RNAKAVNF--------------GIVYGISDFGLSN------------------------- 726 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + + +++ + + + + + Sbjct: 727 -----NLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKD------------------- 762 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + R D+ + R +Q + DI Sbjct: 763 -------KGYVETLFHRRRELPDINSRNF---NVRNFAERTAINSP------IQGSAADI 806 Query: 610 LAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLP 662 L M+N KA ++L VHDEIV E P+ + ++ M + A +P Sbjct: 807 LKIAMINLDKALVEGGYKTKMLLQVHDEIVLEVPNDELVAMKALVKETMEAAVELA--VP 864 Query: 663 LKAE 666 L A+ Sbjct: 865 LIAD 868 >gi|291460329|ref|ZP_06599719.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262] gi|291417084|gb|EFE90803.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262] Length = 867 Score = 286 bits (732), Expect = 8e-75, Method: Composition-based stats. Identities = 87/594 (14%), Positives = 176/594 (29%), Gaps = 136/594 (22%) Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 W + A LK S + ++ + E +R Sbjct: 395 GNWQDLSLAAYLLNP----------LKDSYDYDDLSRDYLGLLLPSEKELGDSERPGKYR 444 Query: 151 REAWRLFGEYCKGDVTV-TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 L G+ + RE+++ E L + + + G VD + Sbjct: 445 AFLSLLSGKKLLSRLDKKERELYR------EIELPLVFTLHEMEESGILVDREALLSYGA 498 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266 + + ++ + + + ++L LF + GL T+ +T VL Sbjct: 499 ELREKIGEIRERIYREAG-EEFNLNSPQQLGQILFEKLGLPGGRKTKTGYSTAADVLEKL 557 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + A + R S+ L+ + DGR+ G + + TGR S Sbjct: 558 SEENQLASDILEYR-TYSKLNSTYAEGLLSWIREDGRIHGHFNQMV-TATGRISSTDPNL 615 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P + R I EG + AD + +E Sbjct: 616 QNIPIRTEMGRRF-------------------------RRVFIPKEGSIFIDADYSQVEL 650 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA ++G++ ++A++ +D++ T + F+V ++VT R K + Sbjct: 651 RILAALSGDEKLIRAYQNADDIHAVTASEVFHVPLSEVTPQLRRNAKAVNF--------- 701 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ + + Sbjct: 702 -----GIVYGIS------------------------------AFGLSEGLSISRQEAKEY 726 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + + + + V + + + + + GR Sbjct: 727 IERYFETYPGVKKFLDGEVELARK--------------------------QGYVRTIFGR 760 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620 D+ ++ + R +Q + DI+ + M ++A Sbjct: 761 KRPVPDISSSNFARRSF---GERVAMNSP------IQGSAADIMKKAMNEVSRALKAGAF 811 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 IVL VHDE++ ETP+ + L L M + +PL A+ + + Sbjct: 812 RARIVLQVHDELLLETPEKEADQVEELLILSMQNAAK--LRVPLIADAKRGRNW 863 >gi|258645581|ref|ZP_05733050.1| DNA polymerase I [Dialister invisus DSM 15470] gi|260402939|gb|EEW96486.1| DNA polymerase I [Dialister invisus DSM 15470] Length = 858 Score = 286 bits (732), Expect = 8e-75, Method: Composition-based stats. Identities = 79/508 (15%), Positives = 149/508 (29%), Gaps = 121/508 (23%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E L + + G D + + V+ KL + + + Sbjct: 456 FEKIENPLAAVLAEMEKAGIATDQKRWEAVCHELKVQERKLLSLIYEAAG-EEFNVNSPK 514 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF + G+ T+ +T VL K P + R S+ L L Sbjct: 515 QLGVILFEKMGMPAGKKTKNGYSTAADVLEMLAKSYPFVKDILEYR-TISKLISTYLEAL 573 Query: 295 VEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 + + GR+ + + TGR S QN+P + Sbjct: 574 PLLIRPETGRIHTSFNQ-TVTATGRLSSSDPNLQNIPVRTAEGR---------------- 616 Query: 354 PDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +RS + G + +D + +E RVLA M+G++ ++AF ED++ T Sbjct: 617 ---------QIRSLFVPGPGYDCFISSDYSQVELRVLAHMSGDESLIRAFRNKEDIHRRT 667 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 A + +VT +QR+ K + + Y L Sbjct: 668 AAEVLGIPFEEVTSEQRSHAKAVNFGIIYG-----ISDFGLANQL--------------- 707 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 K + +++ + + + ++ Sbjct: 708 ------------------------GISRGEAGTYIKKYFERYPYIHAFMKSMVEDAQE-- 741 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 + GR D+ ++ R Sbjct: 742 ------------------------SGRAKTLFGRYRELPDIRSSNF---NRRSFAERTAM 774 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS- 645 +Q + DI+ M+ ++ ++L VHDE+V E ++ N Sbjct: 775 NTP------IQGTAADIMKLAMIEVSRRIKEEGYKSRVLLQVHDELVVEAVSEEKENLKT 828 Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +L M S +PL A+ +E K + Sbjct: 829 LLKETMESVVE--LKVPLIADVHEGKNW 854 >gi|256827248|ref|YP_003151207.1| DNA polymerase I [Cryptobacterium curtum DSM 15641] gi|256583391|gb|ACU94525.1| DNA polymerase I [Cryptobacterium curtum DSM 15641] Length = 885 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 81/596 (13%), Positives = 157/596 (26%), Gaps = 143/596 (23%) Query: 92 RWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 + + A + + E L E + Sbjct: 415 NFFDVTLAAYVLDSSVSRYDFSYLAETY------------LEGALAPVEDDDDRLVMQAA 462 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 R + T+ ++ ++ L + + G +D L Sbjct: 463 CLRALIDPMSQ--ALVADGTKGVYDTID------LPLVPVLAHMERIGALLDTDTLQALG 514 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ETTCQRVLSS 265 + + + L + +++ LF GL T +T +VL Sbjct: 515 SRTAQNIADISERIYELAG-EKFNIDSPQQVSHILFDVIGLPPRKRTSRGYSTDAKVLED 573 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + R ++ ++ L + +DGRL + + TGR S Sbjct: 574 LSSEHQLPGLILEYR-ELAKIMGTYIDALPKLRGADGRLHTSFNETVTT-TGRLSSSNPN 631 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGI 384 QN+P + +R C I S V AD + I Sbjct: 632 LQNIPVRTEFGRH-------------------------IRECFIPLSPEHLFVSADYSQI 666 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA ++G+ + AF +G D + T AR F V +VT + R+ K + + Sbjct: 667 ELRLLAHLSGDAHLIDAFRSGADFHSATAARVFGVPVEEVTPELRSRAKAVNFGIV---- 722 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 + + + Sbjct: 723 ----------------------------------------YGQQAFGLSQSLRIPFGEAQ 742 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + + + V L Q E G A+ Sbjct: 743 AMIDRYFTAYPVVRAY---LDNIVAQAHEKGYALTM-----------------------F 776 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---- 620 GR ++ + + R +Q + DI+ + M+ Sbjct: 777 GRKRHIPELRAHNA---QQRAFGERIAMNHP------MQGTAADIIKKAMVEVDARLRHE 827 Query: 621 --GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++ VHDE+ P ++L +M + +PL + +K + Sbjct: 828 FPNAKMMIQVHDELDLSVPADQVGEVSALLKEVMENVVE--LDVPLIVDVQSAKNW 881 >gi|325686398|gb|EGD28428.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK72] Length = 880 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 100/660 (15%), Positives = 188/660 (28%), Gaps = 149/660 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85 ++ A+ ++ Q L + ++ VL + + Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140 +++P + + L + L + GK + E Sbjct: 388 IELPAAS-FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF 446 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 R E + E +L+ L EQ L ++ + G V+ Sbjct: 447 EHLARKVQVLLETEKPMQEQ--------LRAHNQLDLLLEMEQPLAFVLAKMEIAGIKVE 498 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256 + + L QE+ +L + ++L T LF + GL L T+ Sbjct: 499 RETLQGMQAENEKTLESLTQEIYNLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTG 557 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + P ++ R S+ + L EA+ +DG++ ++ Sbjct: 558 YSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQ 615 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374 TGR S QN+P +R + Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADS 650 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + R K Sbjct: 651 VLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAK 710 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + G++ A+ Sbjct: 711 AVNF--------------GVVYGISDFGLAN----------------------------- 727 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 A + + + ++ + + + Sbjct: 728 -NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARD----------------------- 763 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + R D+ + R +Q + DIL Sbjct: 764 ---KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVA 811 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 M+N +A ++L VHDEIV E P+ + L M + A +PL A+ Sbjct: 812 MINLDRALTEKNFKSRMLLQVHDEIVLEVPNGELTAVRQLVKETMEAAIELA--VPLVAD 869 >gi|145224148|ref|YP_001134826.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK] gi|145216634|gb|ABP46038.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK] Length = 908 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 103/664 (15%), Positives = 197/664 (29%), Gaps = 156/664 (23%) Query: 39 DHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI--- 94 D + L L + V H + L D+ W Sbjct: 367 GGEGRYIDTTGLDPDDEKALASWLADPHVPKALHEAK-----LAIH---DLQGRGWTLAG 418 Query: 95 ---CTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 T + A AL + K + + L D + Sbjct: 419 VTSDTALAAYLVRPGQRSFALDDLSLRY---------LKRELRADNPEQQQLSLLDDSDG 469 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLDQTINDRGYCVDVA 202 +A + V + + + L + + E + + + G VD+ Sbjct: 470 VDDQAVQTLLLRASAVVDLADALDEELARIDSSALLGNMELPVQRVLAELETAGIAVDLE 529 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TC 259 + L + + ++ + + ++L+ LF E + T+T T Sbjct: 530 MLSGLQSEFADQIRDAAEAAYAVIGKQI-NLGSPKQLQVVLFDELEMPKTKRTKTGYTTD 588 Query: 260 QRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 L S P + +R A+R V ++ L+ A+ SDGR+ T A+ TG Sbjct: 589 ADALQSLFDKTGHPFLQHLLAHR-DATRLKVT-VDGLLNAVASDGRIHTTFNQTIAA-TG 645 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KL 376 R S QN+P + + +R + +G +L Sbjct: 646 RLSSTEPNLQNIPIRTEAGRR-------------------------IRDAFVVGDGYGEL 680 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R++A ++ ++ ++AF TGEDL+ +R+F+V +VT + R K M Sbjct: 681 MTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMS 740 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 L GL+ + +K Sbjct: 741 YGL--------------AYGLSAYGLSQQLKI---------------------------- 758 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + + + V + ++ + Sbjct: 759 --STEEAKEQMEQYFARFGGVRDYLRDVVDQARK-------------------------- 790 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 + GR ++ ++ R +Q + DI+ M+N Sbjct: 791 DGYTSTVFGRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAADIIKVAMIN 841 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 +A +L VHDE++ E D + L M S +A +PL+ Sbjct: 842 VDQAIKDAGLKSRTLLQVHDELLFEVADGERDTLDALVREHMGSA--YALDVPLEVSVGF 899 Query: 670 SKRY 673 + + Sbjct: 900 GRSW 903 >gi|258406522|ref|YP_003199264.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692] gi|257798749|gb|ACV69686.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692] Length = 845 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 101/598 (16%), Positives = 171/598 (28%), Gaps = 144/598 (24%) Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 +P R + A E S K+ + Sbjct: 377 GLPYARCFDLSLGAYLLDP--------EQRSYSWDKIRQRH----------------QNQ 412 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 H + L + + L + E L + + RG +D+ Sbjct: 413 LETHPDNNALSIMETGRILRRELANSELLSLMQDIELPLVGVLVRMEKRGLAIDLEAFRR 472 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRV 262 V E L E+ L + R +++ LF + L T +T +V Sbjct: 473 FLDEVQEELDGLTHEIYDLAGQ-EFNLRSSQQMAQVLFGDLELPTGRKTPGGVPSTSSQV 531 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L + + P ++ R + L L + ++ RL L A+ TGR S Sbjct: 532 LEGLRNVHPIIPKILRFR-TLEKLRSTYLEPLPQKVDDTSRLHTHFNQL-ATATGRLSSS 589 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 QN+P +R C +A EG +LV AD + Sbjct: 590 GPNLQNIPIRGE-------------------------FGPRMRQCFVAPEGSRLVAADYS 624 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RVLA ++ + L+AF GED++ T A ++A V + R K + Sbjct: 625 QIELRVLAHLSQDPTLLEAFTQGEDIHSRTAAVIMDIADEHVDSEARRQAKTIN------ 678 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 G+ + E Sbjct: 679 --------FGLLYGMGPQKLS------------------------------RELGISLNE 700 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + + + + VS + + A +Q +G Sbjct: 701 AKTFIQRYFDRLQGVSAFYERIEDAAKQ---HGYVTTWA--------------------- 736 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN------ 616 GR + D+ + + L R+ +VQ + DI+ M+ Sbjct: 737 --GRRRLLPDINSRNANLAQQARR---------MAVNTVVQGSAADIIKMAMIEADGDTE 785 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 AG + L VHDE++ E P A L +M S +PL + + Sbjct: 786 LADAGARLTLQVHDELLLEVPREAAETAGKRLAAIMASVAD--MDVPLAVDWGVGTNW 841 >gi|68535893|ref|YP_250598.1| DNA polymerase I [Corynebacterium jeikeium K411] gi|68263492|emb|CAI36980.1| DNA polymerase I [Corynebacterium jeikeium K411] Length = 859 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 102/646 (15%), Positives = 188/646 (29%), Gaps = 157/646 (24%) Query: 46 DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 D + L E L N T H+S L+ L + T + A Sbjct: 348 DVAPKDE--KALAEWLANPQATKWLHDSKKAYHTLQNQ-GLTLDGVE-HDTSLAAYLLRP 403 Query: 106 ---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD--RNKPNHREAWRLFGEY 160 +L V + G EL E + + + + EA Y Sbjct: 404 DVRTLSLADVVQRH--------VGHELSEGATGPERAQAVAELVKALTPEIEAAGQAELY 455 Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 D+ V + + + G VD A L+ + Sbjct: 456 --FDLEVPLAL----------------ILAAMEHAGIAVDDAALQELSDDYGARLNEEIA 497 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKL--TPQAIQ 275 L + ++L+ LF L T+ +T L P Sbjct: 498 AARELAGEPELNLSSPKQLQKVLFETFDLPKTKKTKTGYSTAAAELEKLAAQSNHPFLGH 557 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +R + ++ L+EA+ DGR+ T GA+ TGR S QN+P + + Sbjct: 558 LMAHR-EYQKMKST-IDGLIEAVGDDGRIHTTFNQKGAA-TGRLSSSDPNLQNIPVRTDA 614 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAG 394 + +R+ EG L+ AD + IE RV+A ++ Sbjct: 615 GRK-------------------------IRAAFTVGEGYETLLTADYSQIEMRVMAHLSE 649 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + ++A+ +GEDL+ +R F+V +VT + R K + L Sbjct: 650 DAGLIEAYASGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLV-------------- 695 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 GL+ + +K ++ +R+ + ++ Sbjct: 696 YGLSAFGLSQQLKISAW------------------------------EAKRIMDNYFERF 725 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + + + ++T GR ++ Sbjct: 726 GGVKRYLDHVVEVAKET--------------------------GYTETLYGRRRYLPELN 759 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 ++ R +Q + DI+ M+ + ++L V Sbjct: 760 SSN---RVARENAERAALNAP------IQGTAADIIKLAMLRVDREITRQQLASRVLLQV 810 Query: 629 HDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E + + L M + +PL + Sbjct: 811 HDELVVEVAPGELEQITELVEREMDAAAQ--LRVPLDVSAGTGDNW 854 >gi|260437044|ref|ZP_05790860.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876] gi|292810353|gb|EFF69558.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876] Length = 873 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 86/663 (12%), Positives = 183/663 (27%), Gaps = 148/663 (22%) Query: 32 LFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 A + V C + + +KE + ++ + N Sbjct: 334 GVAICYKPDSVTFISCEGLITEEYLVSKIKEL--DCEIYTI--NLK-------NHLEYFT 382 Query: 89 P--IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + ++A + E G + R ++ Sbjct: 383 DSYKDKIHDIAIMAYLLNP-----LLQEYEYNDIANDFMGITVEGRSDIIGKNKVSSYLT 437 Query: 147 KPNHRE----AWRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVD 200 + A + + D + + + E + Y+ +++ G V+ Sbjct: 438 DGFDKIVKLFALEAYVAFNSFD-EAMKRLRETDMEKVYHDIELPVIYVLKSMEKYGIAVN 496 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + V+ L+Q + + ++L LF + L T+ + Sbjct: 497 KDALKQYGDELSVKIKDLEQSIYKEAGT-EFNINSPKQLGEVLFEKLNLPCGKKTKTGYS 555 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL P + R ++ + L E + DGR+ T + TG Sbjct: 556 TSADVLEKLSADYPIVDSILEYR-TLAKLKSTYADGLAEYI-VDGRIHSTFNQ-TITATG 612 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P + +R + +G + Sbjct: 613 RISSTEPNLQNIPIRMELGRK-------------------------IRKVFVPEDGFIFM 647 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R+LA M+G+ ++A+ D++ T ++ F +VT QR+ K + Sbjct: 648 DADYSQIELRLLAHMSGDDTLIEAYNEDRDIHKITASKVFKTPLDEVTPRQRSNAKAVNF 707 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y + L+++ Sbjct: 708 GIVYGIS-----SFGLSRDLSIS------------------------------------- 725 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + + + + L ++ ++ N Sbjct: 726 --KKEAKEYIDEYFNTYKTLKNYLDNLVKSAKE--------------------------N 757 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 GR ++ + R Q + DI+ M+N Sbjct: 758 GYTKTIYGRRRPVPELSSGNFMQRQF---GERIAMNSPL------QGTAADIIKIAMINV 808 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYES 670 K ++L +HDE++ ET +E + M + + +PL + + Sbjct: 809 YKRLKNERLESRLILQIHDELLIETKIGEEEQVRKILSEEMVNAAT--LRVPLAIDIHSG 866 Query: 671 KRY 673 K + Sbjct: 867 KDW 869 >gi|169334513|ref|ZP_02861706.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM 17244] gi|169259230|gb|EDS73196.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM 17244] Length = 888 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 101/636 (15%), Positives = 194/636 (30%), Gaps = 133/636 (20%) Query: 54 PQVLKEALENTDVTIVAHNSYFE-RTVLKACFNLDIPIHRWICTLVLARSNGLP---SAL 109 L + + + + IV HN + V + DI + +L Sbjct: 366 ISELVKIMRS-GLDIVTHNFK-DVYKVFVSQGYDDIHCR--FDIYLGGYVLNPSDERYSL 421 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + + + E+G+ + F E + + K K Sbjct: 422 EVMSKKYLDIDLEEEKGEAVQQSFLDIEDNNKYNMQMKKAKSIYSLAGIFKEKIKEEEME 481 Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 ++++ + E +L Y+ + G+ VD+ L D L + + Sbjct: 482 DLYQ------NIEHKLMYVLGDMELEGFKVDLNTLEELGVDFDKRVEDLTRNIREAAGED 535 Query: 230 V-SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + GL T+ +T VL + P + + R S+ Sbjct: 536 EDFNVNSTKQLGHVLFDKMGLPALKKTKTGYSTNIEVLEKLRDHHPIIPMIIDLRQ-ISK 594 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + LV ++ D + + TGR S QN+P + Sbjct: 595 LNSTYVKGLVSLIDKDTNKIHSTFNQTITTTGRISSSNPNLQNIPVRTEEGR-------- 646 Query: 346 LPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +R I+S E LV AD + IE RVLA ++ ++ + +F+ Sbjct: 647 -----------------IIRKVFISSSENNVLVDADYSQIELRVLAHISKDEKLINSFKN 689 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 ED++ T + FNV +VT + R+ K + + Y GL++ Sbjct: 690 NEDIHTRTASEVFNVPIDEVTSEMRSSAKAVNFGIVYGIS-----DFGLAKGLSIA---- 740 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + + K+ V + ++ Sbjct: 741 -----------------------------------RKDAKEYIDTYLSKYPGVCKYMEDI 765 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 ++ + + +RR + +Y K Sbjct: 766 VVTAKE--QGYVTTMFNRRRYINEIYSKNFN---------------------------VR 796 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPD 638 R +Q + DI+ M+N K ++L VHDE++ +TP Sbjct: 797 SFGERTA------LNTPIQGSAADIIKLAMVNVQNELNKRKLKAKLILQVHDELIIDTPM 850 Query: 639 TDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +L M + PLKA+ K + Sbjct: 851 EEVEEVKALLKDKMENVVD--MSCPLKADISVGKTW 884 >gi|332364060|gb|EGJ41837.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK49] Length = 880 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 102/660 (15%), Positives = 190/660 (28%), Gaps = 149/660 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85 ++ A+G D + + ++ Q L + ++ VL + + Sbjct: 337 EIVGLAWG-DSGQIYV---GSSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140 +++P + + L + L + GK + E Sbjct: 388 IELPAAA-FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF 446 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 R E E +L+ L EQ L ++ + G V+ Sbjct: 447 KHLARKIQVLLETEEPMQEQ--------LRSHDQLDLLLEMEQPLAFVLAKMEIAGIKVE 498 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256 + + L QE+ L + ++L T LF + GL L T+ Sbjct: 499 RETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTG 557 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + P ++ R S+ + L EA+ +DG++ ++ Sbjct: 558 YSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQ 615 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374 TGR S QN+P +R + Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADS 650 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + R K Sbjct: 651 VLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAK 710 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + G++ A+ Sbjct: 711 AVNF--------------GVVYGISDFGLAN----------------------------- 727 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 A + + + ++ + + + Sbjct: 728 -NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARD----------------------- 763 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + R D+ + R +Q + DIL Sbjct: 764 ---KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVA 811 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 M+N +A ++L VHDEIV E P+ + L M + A +PL A+ Sbjct: 812 MINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869 >gi|332358870|gb|EGJ36692.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1056] Length = 880 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 97/655 (14%), Positives = 187/655 (28%), Gaps = 139/655 (21%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85 ++ A+ ++ Q L + ++ VL + + Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRAKVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +++P + + +L Q + + + + KG Sbjct: 388 IELPAAA-FDARLAKYLL-STVEDNELATIARLYGQTILPTDDEV--YGKGAKRALPEQE 443 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 H + + +L+ L EQ L ++ + G V+ Sbjct: 444 QLFEHLARKVQVLLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQ 503 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE---TTCQ 260 + + L QE+ L + ++L T LF + GL L T+ +T Sbjct: 504 GMQAENEKTLESLTQEIYDLAGQK-FNINSPKQLGTILFEDMGLPLEYTKKTKTGYSTAV 562 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL + P ++ R S+ + L EA+ +DG++ ++TGR S Sbjct: 563 DVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQTGRLS 620 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVA 379 QN+P +R + L+ + Sbjct: 621 SVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADSVLLSS 655 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELA 438 D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + R K + Sbjct: 656 DYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKSEDVTPNDRRNAKAVNF- 714 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ A+ Sbjct: 715 -------------GVVYGISDFGLAN------------------------------NLGI 731 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 A + + + ++ + + + Sbjct: 732 SRKAAKDYIQTYFERFPGIKNYMETIVREARD--------------------------KA 765 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 + R D+ + R +Q + DIL M+N Sbjct: 766 YVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVAMINLD 816 Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 +A ++L VHDEIV E P+ + L M + A +PL A+ Sbjct: 817 RALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869 >gi|313899467|ref|ZP_07832977.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] gi|312955755|gb|EFR37413.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] Length = 861 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 92/681 (13%), Positives = 193/681 (28%), Gaps = 145/681 (21%) Query: 13 PIDLTKCGICKYAE-------DVCVILFAFGFDDHPVELW---DCVHDPVMPQVLKEALE 62 DL + G YA D + FA D E D + D + LKE E Sbjct: 302 SPDLLQDGALVYANVDNESYYDAQLYGFAISLQD-RTEYIELSDALQDTAFLEWLKE--E 358 Query: 63 NTDVTIVAHNSYFERTVLKACFNLD-IPIHRW-ICTLVLARSNGLPSA-LKAVGEALKLS 119 N + ++ + + IP ++ A + + E + Sbjct: 359 NGK-------AVYDAKNFYHALHKNNIPFADVTFDVMIAAFLVDGTLSDYDKLAEKYQFD 411 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 +++ F K + + + A + + + + E + Sbjct: 412 RSLLKD-----DVFGKKGKGKLVDSDEAARYAMAQADYLQDLVAKLDTALREMEMKELFT 466 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 + E L ++ + G ++ + + + L ++ + + ++L Sbjct: 467 TIEMPLTHVLYAMEKEGVVTSLSTLDEIAKATSDKIDALSAKIYEIAGM-EFNINSPKQL 525 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 L+ E GL +T VL P + +R + + L + + Sbjct: 526 AGILYDELGLKAGKKR-STAADVLEKLASQHPMIPLLLEHR-KYQKIYSTYAVGLSKHVL 583 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 DG++ + ++TGR S QN+ +E Sbjct: 584 KDGKIHTIFNQIQ-TQTGRLSSSEPNLQNISVRDEEGKE--------------------- 621 Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R +ASEG L+ AD + IE R+LA MA E+ + AF G D++ T + F+V Sbjct: 622 ----IRKAFVASEGHVLLSADYSQIELRMLAHMANEEVMIDAFNHGIDIHTKTAMQIFDV 677 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 V + R K + G + + Sbjct: 678 EHDAVDANMRRSAKTVNF--------------GIVYGQSDFGLSEQ-------------- 709 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 + + + + E+ Sbjct: 710 ----------------LGITRKEAHAFIDKYFASYPNIKNFMDTTIAFCEE--------- 744 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 + + R +++ + + + R Sbjct: 745 -----------------HGYVKTLFNRRRYIKEISDKNYMMREFGK---RAAMNAP---- 780 Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MT 652 +Q + D++ M++ K ++L +HDE++ + + + + M Sbjct: 781 --IQGSAADLIKLAMIHIYKKMQEEQVKSRMILQIHDELIFDVWEEELEQMKTIVEEGMQ 838 Query: 653 SNPSWAKGLPLKAEGYESKRY 673 +PL AE + + Sbjct: 839 HAMK--LRVPLIAEANIGRTW 857 >gi|237785407|ref|YP_002906112.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385] gi|237758319|gb|ACR17569.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385] Length = 925 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 99/643 (15%), Positives = 198/643 (30%), Gaps = 143/643 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111 LKE L++ D IV H+ +L + I T + + L++ Sbjct: 381 DALKEWLQDPDHPIVVHDGKGLLHMLSSEGLTATNIE--HDTRLASYLIHPDFGSFDLES 438 Query: 112 VGEA-LKLS---------SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 V L ++ G+++ + W ++ Sbjct: 439 VVRRRLGRDLYDSDVVSWEEEHRSGRQMSLDVGDLSSDGDDDRSVAGISWPEWAKLADHA 498 Query: 162 KGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 + + + E+ K+L+ + E L + + G V+ L + Sbjct: 499 EAPLELAEELAKKLDKAGLYSIYENLEIPLVPILFGMERAGIKVNRERMTALRDSTAEKL 558 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272 K +E +L + ++L+ LF + L T+ +T + + + P Sbjct: 559 AKEVEEARALVDMPKLNLGSPKQLQEVLFDKLELSKTKKTKTGYSTAAKAIERLAEKHPH 618 Query: 273 A--IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 + +R R + L+ L++A+ SDGR+ T A+ TGR S QN+P Sbjct: 619 PFLDHLLAHREYQKRVST--LDGLIKAIASDGRIHTTFNQ-TATATGRLSSTDPNLQNIP 675 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVL 389 + +R+ + EG + L+ AD + IE RV+ Sbjct: 676 VRTEEGR-------------------------QIRAAFVPGEGYEALLTADYSQIEMRVM 710 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A + ++ ++A+ +GEDL+ ++ F+V +VT + R K + L Y Sbjct: 711 AHFSQDRGLIEAYRSGEDLHNFVGSQVFDVPVNEVTPELRRRVKALSYGLVYG-----LS 765 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 + + L+ +++ Sbjct: 766 EYGLSQQLD---------------------------------------ISVREAKKIMVK 786 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + ++ V NE+ + + GR Sbjct: 787 YFERFGGVRRYLNEVVDRARK--------------------------DEYTSTMLGRRRY 820 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYD 623 D+ + R +Q + DI+ M+ K Sbjct: 821 LSDLASLN---RQARENAERAALNAP------IQGTAADIIKVAMIRVDAALKKEKLASR 871 Query: 624 IVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKA 665 ++L VHDE+ E + + ++ M A +PL+ Sbjct: 872 VLLQVHDELDVEVANGELEQVRGIIQREMDEAIELA--VPLEV 912 >gi|327467325|gb|EGF12825.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK330] Length = 880 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 100/660 (15%), Positives = 186/660 (28%), Gaps = 149/660 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85 ++ A+ ++ Q L + ++ VL + + Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLIKTALKT-----YDLKRTKVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140 +++P + + L + L + GK + E Sbjct: 388 IELPAAS-FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF 446 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 R E E +L+ L EQ L ++ + G V+ Sbjct: 447 EHLARKIQVLLETEEPMQEQ--------LRAHDQLDLLLEMEQPLAFVLAKMEIAGIKVE 498 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256 + + L QE+ L + ++L T LF + GL L T+ Sbjct: 499 RETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTG 557 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + P ++ R S+ + L EA+ +DG++ ++ Sbjct: 558 YSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQ 615 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374 TGR S QN+P +R + Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADS 650 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + R K Sbjct: 651 VLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAK 710 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + G++ A+ Sbjct: 711 AVNF--------------GVVYGISDFGLAN----------------------------- 727 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 A + + + ++ + + + Sbjct: 728 -NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARD----------------------- 763 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + R D+ + R +Q + DIL Sbjct: 764 ---KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVA 811 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 M+N +A ++L VHDEIV E P+ + L M + A +PL A+ Sbjct: 812 MINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869 >gi|325697968|gb|EGD39851.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK160] gi|327458424|gb|EGF04780.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1] gi|327471749|gb|EGF17190.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK408] Length = 880 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 100/660 (15%), Positives = 186/660 (28%), Gaps = 149/660 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85 ++ A+ ++ Q L + ++ VL + + Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140 +++P + + L + L + GK + E Sbjct: 388 IELPAAA-FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF 446 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 R E E +L+ L EQ L ++ + G V+ Sbjct: 447 EHLARKIQVLLETEEPMQEQ--------LRSHNQLDLLLEMEQPLAFVLAKMEIAGIKVE 498 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256 + + L QE+ L + ++L T LF + GL L T+ Sbjct: 499 RETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTG 557 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + P ++ R S+ + L EA+ +DG++ ++ Sbjct: 558 YSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQ 615 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374 TGR S QN+P +R + Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADS 650 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + R K Sbjct: 651 VLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAK 710 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + G++ A+ Sbjct: 711 AVNF--------------GVVYGISDFGLAN----------------------------- 727 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 A + + + ++ + + + Sbjct: 728 -NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARD----------------------- 763 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + R D+ + R +Q + DIL Sbjct: 764 ---KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVA 811 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 M+N +A ++L VHDEIV E P+ + L M + A +PL A+ Sbjct: 812 MINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869 >gi|309776902|ref|ZP_07671872.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53] gi|308915313|gb|EFP61083.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53] Length = 861 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 83/668 (12%), Positives = 181/668 (27%), Gaps = 154/668 (23%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-- 84 D + FA D E + D + L+ + V ++ Sbjct: 323 DAVLYGFAVSLKDQT-EYIEL-QDALADTRFLAWLKEENGKAV-----YDAKNFYHALHK 375 Query: 85 -NLDIPIHRWICTLVLARSNGLPSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 ++ + ++ A + + E + + L+ G+ + Sbjct: 376 NGIEFADVK-FDVMIAAFLVDGTLSDYDKLAEKYQFD-------RSLLKDDVFGKKGKGK 427 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTI 192 Y +++ L+ + L ++ + Sbjct: 428 L--------VDLDEAARYAMLQADHLQDLVSELDASLKEMEMKELFDTIEMPLTHVLYAM 479 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G ++ + + + L ++ + + ++L L+ E GL Sbjct: 480 EKEGVVTSLSTLDEIARATSDKIDTLSAQIYEMAGM-EFNINSPKQLAQILYDELGLKAG 538 Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 +T VL K P + +R + + L + + DG++ + Sbjct: 539 KKR-STAADVLEKLAKQHPIIPLLLEHR-KYQKIYSTYAVGLSKHVLKDGKIHTIFNQIQ 596 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 ++TGR S QN+ +E +R +ASE Sbjct: 597 -TQTGRLSSSEPNLQNISVRDEEGKE-------------------------IRKAFVASE 630 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G L+ AD + IE R+LA MA E+ + AF G D++ T + F+V V + R Sbjct: 631 GHVLLSADYSQIELRMLAHMADEEVMIDAFNHGIDIHTKTAMQIFDVDHDSVDANMRRSA 690 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G + + Sbjct: 691 KTVNF--------------GIVYGQSDFGLSEQ--------------------------- 709 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + + Q E+ Sbjct: 710 ---LGISRKEAHAFIDKYFASYPNIKSFMDSTIQFCEE---------------------- 744 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 N + R +++ + + + R +Q + D++ Sbjct: 745 ----NGYVKTLFNRRRYIKEISDKNYMMREFGK---RAAMNAP------IQGSAADLIKL 791 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665 M++ + ++L +HDE++ + + + + M +PL A Sbjct: 792 AMIHIFERMRREQVKSRMILQIHDELIFDVWEDELEQMKSIVEEGMQQAMK--LRVPLIA 849 Query: 666 EGYESKRY 673 E K + Sbjct: 850 EANIGKSW 857 >gi|327463731|gb|EGF10047.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1057] Length = 880 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 100/660 (15%), Positives = 185/660 (28%), Gaps = 149/660 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85 ++ A+ ++ Q L + ++ VL + + Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRAKVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140 +++P + + L + L + GK + E Sbjct: 388 IELPAAA-FDARLAKYLLSTVEDNELATIARLYGQTVLPTDDEVYGKGAKRALPEQEQLF 446 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 R E E +L+ L EQ L ++ + G V+ Sbjct: 447 EHLARKIQVLLETEEPMQEQ--------LRAHDQLDLLLEMEQPLAFVLAKMEIAGIKVE 498 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256 + + L QE+ L + ++L T LF + GL L T+ Sbjct: 499 RENLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTG 557 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + P ++ R S+ + L EA+ +DG++ ++ Sbjct: 558 YSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQ 615 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374 TGR S QN+P +R + Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADS 650 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + R K Sbjct: 651 VLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAK 710 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + G++ A+ Sbjct: 711 AVNF--------------GVVYGISDFGLAN----------------------------- 727 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 A + + + ++ + + + Sbjct: 728 -NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARD----------------------- 763 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + R D+ + R +Q + DIL Sbjct: 764 ---KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVA 811 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 M+N +A ++L VHDEIV E P + L M + A +PL A+ Sbjct: 812 MINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLVKETMEAAIKLA--VPLVAD 869 >gi|284044321|ref|YP_003394661.1| DNA polymerase I [Conexibacter woesei DSM 14684] gi|283948542|gb|ADB51286.1| DNA polymerase I [Conexibacter woesei DSM 14684] Length = 884 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 107/639 (16%), Positives = 188/639 (29%), Gaps = 161/639 (25%) Query: 50 DPVMPQVLKEAL-ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--- 105 P+VL A+ E + AH + L+ ++P TL+ A Sbjct: 388 GDAGPEVLAAAIGERPAL---AH----DAKALR-----EVPATLAHDTLIAAYLLEPARR 435 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 L + E + + + R + RE LF DV Sbjct: 436 SYPLDELTEERGIGTDVEDAAAADAILVHALT----AAQRPQLEERELLPLF-----DDV 486 Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 + + + + G +D L T+ V E L++E+ L Sbjct: 487 ELPL----------------VRVLRAMETAGLRLDTELLATIRTRVMDEAVALEREIWEL 530 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE---DLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 T ++L LF + GL + +T RVL + + P ++ Sbjct: 531 TG-EEFMIGSPQQLGQILFEKLGLSRKRRGKTGYSTDARVLQAIRGEHPVIEKIER-WRE 588 Query: 283 ASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ A L+ L ++ D RL T + A+ TGR S QN+P + E Sbjct: 589 LTKLASTYLDALPLLISPEDHRLHTTFNQVTAA-TGRLSSTNPNLQNIPIRTPLGRE--- 644 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R+C +A G L+ AD + +E RVLA +AGE+ + Sbjct: 645 ----------------------IRACFVAEPGNVLISADYSQVELRVLAHIAGEEVLKEI 682 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F GED++ T A + P Q+ R+ GL+ Sbjct: 683 FRRGEDVHTATAAAILGIDPEQLDAGSRSKA--------------KMVNYGIVYGLSAFG 728 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 A ++ + + V Sbjct: 729 LADRLQI------------------------------PREEAQEFIDRYLDGFPAVQAFI 758 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 EQ + G GR ++ + Sbjct: 759 RT---TIEQATDQGYVTTL-----------------------MGRRRQIPELRARNYQMR 792 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635 +L ++Q + D++ M+NA +A ++L +HDE++ E Sbjct: 793 QLGERL---------AVNTVIQGTAADVIKLAMVNADRALHASGLRTRLILQIHDELLFE 843 Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P + A ++ M PL + + Sbjct: 844 GPAEEAEQARDLVVPQMVDALELDP--PLVVDAGIGPNW 880 >gi|71892386|ref|YP_278120.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796492|gb|AAZ41243.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 936 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 95/673 (14%), Positives = 187/673 (27%), Gaps = 139/673 (20%) Query: 28 VCVILFAFGFDDHPVELWDCVHD-----------PVMPQVLKEALENTDVTIVAHNSYFE 76 +I D D + +L+ LEN + V + F Sbjct: 372 ANIISICLSIDTKESAYIPIKTDSINNHQNFLYLEEILSILQPTLENEKIKKVGQHLKFS 431 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136 ++LK N+++ ++ L + + ++ ++ F K Sbjct: 432 YSILKRY-NINLAGMA-FDVILELYI------LYGTANYHDIKNFLDKDTFNVVTNFKKN 483 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE-----------QEL 185 + + N + + +L Y + + L P L Sbjct: 484 YDN--YNENNILSDLQNIQLQSLYAAKFIKSLFNLHHTLWPKIEANNKLKKIFEEVEMPL 541 Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 + I + G +D L +T +D L+ E L + ++L+ L+ Sbjct: 542 ISILSRIENYGVLIDKKLLNTHAVELDYRLHALELEAYQLVGTP-FNLASTKQLQEILYN 600 Query: 246 ETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + L +T + VL K + R S+ +N L+ +N Sbjct: 601 QQKLPILKKTPKGAPSTNEEVLKKLSKKYSMPRIILQYR-ALSKLQSTYINKLIAMINKK 659 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 T + TGR S QN+P + + Sbjct: 660 SNRVHTSYNQTRTSTGRLSSTSPNLQNIPNRNYDGRK----------------------- 696 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA + +V AD + IE R++A ++ + + F + +D++ T + F A Sbjct: 697 --IRQAFIAPKNFLIVAADYSQIELRIMAHLSQDIELINDFLSEKDIHTATASEIFVTAL 754 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 VT +QR K + L Y A L++ + + + Sbjct: 755 HLVTDEQRQRAKTINFGLIYGMSA-----FGLARQLSVTCKEAQKYVDRYFNRYPGVMKY 809 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + ++E+ ++ G +S +A G A Sbjct: 810 MQHIREHANKYGYVSTLDGRRLYLP-----DIYSANILQKKGAERAAINAPMQGSAADII 864 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 K+ + + + Sbjct: 865 KKAMISIDNWLQKDEIP------------------------------------------- 881 Query: 602 VQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKG 660 +R I+ VHDE+V E + + LM + Sbjct: 882 ----ARIIM----------------QVHDELVFEVHNDIVDPVVKKIKKLMEEC--FIMD 919 Query: 661 LPLKAEGYESKRY 673 +PLK + K + Sbjct: 920 VPLKVDVGIGKNW 932 >gi|325680927|ref|ZP_08160464.1| DNA-directed DNA polymerase [Ruminococcus albus 8] gi|324107391|gb|EGC01670.1| DNA-directed DNA polymerase [Ruminococcus albus 8] Length = 857 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 83/506 (16%), Positives = 160/506 (31%), Gaps = 119/506 (23%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E L + ++ G D + + + L ++ L G + + Sbjct: 456 FNEVEMPLCEVLASMEHYGVRADTDGIREFGKGLKKDIEALTSQIYDLAGG-EFNIASPK 514 Query: 238 KLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF + GL + T++ T VL P V R ++ +++L Sbjct: 515 QLGEVLFEKLGLPAKKKTKSGYSTNAEVLEELADKHPIVGLVLEYR-TLTKLNSTYVDSL 573 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ + +DGR+R + +RTGR S QN+P Sbjct: 574 LKEVEADGRVRSVFKQ-TETRTGRISSTEPNMQNIPVRKEIGR----------------- 615 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R +A +G + AD + IE RVLA + G++ K F G D++ T + Sbjct: 616 --------NMRKFFVAGDGYTFLDADYSQIELRVLAEVCGDENMRKTFADGTDIHTMTAS 667 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 + F + V + R+ K + + G+ + + + Sbjct: 668 QVFGIPADAVLPEMRSAAKAVNFGII--------------YGIGAFSLSKDI-------- 705 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 ++ K + +VSE + E I+N Sbjct: 706 ----------------------GVSVKEAKQYIKNYLDNFPKVSEFM---DKTVEDGIKN 740 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 G GR ++ + + R Sbjct: 741 GYVTTI-----------------------FGRRRYIPELAATNKVMQAFGK---RAAMNA 774 Query: 595 GKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET-PDTDEFNASML 647 +Q + DI+ M+ K ++L VHDE++ E PD E ++L Sbjct: 775 P------IQGAAADIIKMAMVKVYKRLKAEKLDARLILQVHDELIIEVTPDDKEKAKAIL 828 Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRY 673 M ++ +P++ E + + Sbjct: 829 KEEMEKAVNFT--VPMEVSVGEGESW 852 >gi|332364956|gb|EGJ42724.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK355] Length = 880 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 99/669 (14%), Positives = 185/669 (27%), Gaps = 155/669 (23%) Query: 28 VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ + + D ++ Q L + ++ Sbjct: 326 FEILGDNYHKEEIVSLAWGDSRQIYV--GTSDLLQQPLFQEFLTKTALKT-----YDLKR 378 Query: 79 --VLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIA 131 VL + + +++P + + L + L + GK Sbjct: 379 TKVLLSHYGIELPAAA-FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAKR 437 Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191 + E R E E +L L EQ L ++ Sbjct: 438 ALPEQERLFEHLARKVQVLLETEEPMLEQ--------LRAHDQLNLLLEMEQPLAFVLAK 489 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G V+ + + L QE+ L + ++L T LF + GL L Sbjct: 490 MEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPL 548 Query: 252 --EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T+ +T VL + P ++ R S+ + L EA+ +D ++ Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADSKIHT 607 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 ++TGR S QN+P +R Sbjct: 608 RYVQD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRK 641 Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQV 424 + L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + V Sbjct: 642 AFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDV 701 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T + R K + G++ A+ Sbjct: 702 TPNDRRNAKAVNF--------------GVVYGISDFGLAN-------------------- 727 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 A + + + ++ + + + Sbjct: 728 ----------NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARD-------------- 763 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 + R D+ + R +Q Sbjct: 764 ------------KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQG 802 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSW 657 + DIL M+N +A ++L VHDEIV E P+ + L M + Sbjct: 803 SAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRKLVKATMEAAIEL 862 Query: 658 AKGLPLKAE 666 A +PL A+ Sbjct: 863 A--VPLVAD 869 >gi|324991808|gb|EGC23733.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK405] Length = 880 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 100/660 (15%), Positives = 186/660 (28%), Gaps = 149/660 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85 ++ A+ ++ Q L + ++ VL + + Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140 +++P + + L + L + GK + E Sbjct: 388 IELPAAA-FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF 446 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 R E E +L+ L EQ L ++ + G V+ Sbjct: 447 EHLARKIQVLLETEEPMQEQ--------LRSHNQLDLLLEMEQPLAFVLAKMEIAGIKVE 498 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256 + + L QE+ L + ++L T LF + GL L T+ Sbjct: 499 RETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTG 557 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + P ++ R S+ + L EA+ +DG++ ++ Sbjct: 558 YSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQ 615 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374 TGR S QN+P +R + Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADS 650 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + R K Sbjct: 651 VLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAK 710 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + G++ A+ Sbjct: 711 AVNF--------------GVVYGISDFGLAN----------------------------- 727 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 A + + + ++ + + + Sbjct: 728 -NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARD----------------------- 763 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + R D+ + R +Q + DIL Sbjct: 764 ---KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVA 811 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 M+N +A ++L VHDEIV E P+ + L M + A +PL A+ Sbjct: 812 MINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869 >gi|329942446|ref|ZP_08291256.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10] gi|332287087|ref|YP_004421988.1| DNA polymerase I [Chlamydophila psittaci 6BC] gi|313847683|emb|CBY16671.1| putative DNA polymerase I [Chlamydophila psittaci RD1] gi|325506906|gb|ADZ18544.1| DNA polymerase I [Chlamydophila psittaci 6BC] gi|328815356|gb|EGF85344.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10] gi|328914321|gb|AEB55154.1| DNA polymerase I [Chlamydophila psittaci 6BC] Length = 869 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 98/656 (14%), Positives = 190/656 (28%), Gaps = 129/656 (19%) Query: 30 VILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 ++ A D V D H + LK+ + D +N + LK + I Sbjct: 328 LMGVALACD-EQVYYVDIEHAQDDVITPLKDFFKRKDTEFYGYNIKRDHHALKNA-GIHI 385 Query: 89 PIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + + + + + L + GKE Sbjct: 386 DNITL-DLALAEHLINGGAKISYQTLLVDHGLMESAGKYGKEWGQLSLPILKSPAKPAEY 444 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 + +I + + E L + TI G +DV Sbjct: 445 FGEFVSHLPKIKKSLLE----ELKIKGVEDLFFNMEMPLENVLFTIERNGMPLDVEDLQE 500 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266 L + + E L ++ +L + + ++L L+ + GL D +T VL + Sbjct: 501 LERTLSEELAILTDDIYTLAG-ASFNIKSPKQLSDVLYNKLGLTPIDKARSTKAEVLEAL 559 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFP 325 ++ R + + L ++ R+ T +G + TGR + Sbjct: 560 LGEHEIVEKILAFR-AIEKLLSTYVKALPRQIDPHTSRIHPTFNQMG-TVTGRLACQDPN 617 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI-ASEGKKLVVADLAGI 384 QN+P S +R + + AD + I Sbjct: 618 LQNIPIRSERGR-------------------------LLRKAFRDTRQNNYFLSADYSQI 652 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R LA ++ ++ AFE+ ED++ T ++ F+V +VTK QR K + Sbjct: 653 ELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEEVTKQQRMQAKTVN-------- 704 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 G + + + + Sbjct: 705 ------FGIIYG------------------------------QQAYGLSKILKISVSEAQ 728 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 ++ A+ ++ V+ +E + NL + Sbjct: 729 KLIDAYFDRYPAVARFIDETISQACE--------------------------NLRVKTLL 762 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------T 618 GR R N T +R + G +Q + +++ M+ Sbjct: 763 GR---------ERIIDNWTEFSNSRAAS-GRLAVNTRIQGSAAELIKLAMLQLADALEKR 812 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 K ++L +HDE++ E P+ ++ L +M S +PL K + Sbjct: 813 KLRSRMLLQIHDELIFEVPEEEKEEVQTLVRDIMESAM--ILSVPLVVNILIGKNW 866 >gi|313893738|ref|ZP_07827305.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str. F0412] gi|313441752|gb|EFR60177.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str. F0412] Length = 873 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 86/596 (14%), Positives = 166/596 (27%), Gaps = 137/596 (22%) Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 R +LA L RF D Sbjct: 400 KTARVHDMSLLAYLLDPTRTN------YGYL--------YLTERFSVPSIASGSVDVECV 445 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + +A E E++ E + E L + + G +D Sbjct: 446 SMVKALLAMNEVACESARRE-ELWSLYE---TIELPLIHTLVVMEKNGIYIDTEKLAETT 501 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 E ++ QE+ + + ++L LF + L + T+ +T VL Sbjct: 502 ARFKEELAQVQQEIYDIAG-ETFNINSPKQLGVILFEKMNLPIIKKTKTGYSTDAEVLDM 560 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + +P ++ R ++ L +N + T + TGR S Sbjct: 561 LRHESPIVEKILAYR-SVAKLVSTYCEGLAVLINDKTKRIHTTFNQMVTATGRLSSSDPN 619 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGI 384 QN+P + E +R+ G LV AD + I Sbjct: 620 LQNIPVRTEKGRE-------------------------IRALFYPGAGYDTLVSADYSQI 654 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA ++G++ +KAF G+D++ T A + VT ++R+ K + Sbjct: 655 ELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQEDVTSEERSHAKAINFG------ 708 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 G++ + + + Sbjct: 709 --------IIYGISDFGLS------------------------------RDLGITRGEAK 730 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + ++ +V E + + Q +T + + Sbjct: 731 NYIDLYFSRYPKVKEYMDRMVQEAHETGK--------------------------VRTMF 764 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG--- 621 GR D+ + R +Q + DI+ M + Sbjct: 765 GRQRELPDINSRNF---NRRSFAERTAMNTP------IQGTAADIIKLAMNQVEQKLEEG 815 Query: 622 ---YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E +++ L M S + L + + ++ + Sbjct: 816 NFTSRLLLQVHDELVLEVVNSELEAVEELLRTTMQSVVE--LQVHLIVDVHHAENW 869 >gi|262281777|ref|ZP_06059546.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA] gi|262262231|gb|EEY80928.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA] Length = 880 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 98/660 (14%), Positives = 185/660 (28%), Gaps = 149/660 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85 ++ A+ ++ Q L + ++ VL + + Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLAKTALKT-----YDLKRTKVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140 +++P + + L + L + GK + E Sbjct: 388 IELPAAS-FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF 446 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 R E + +L+ L EQ L ++ + G V+ Sbjct: 447 EHLARKVQVLLETEEPMKDQ--------LRSHDQLDLLLEMEQPLAFVLAKMEIAGIKVE 498 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL--HLEDLTE-- 256 + + L QE+ L + ++L T LF + GL T+ Sbjct: 499 RETLQGMQVENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLSLEYTKKTKTG 557 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + P ++ R S+ + L EA+ +DG++ ++ Sbjct: 558 YSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQ 615 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374 TGR S QN+P +R + Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADS 650 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + R K Sbjct: 651 VLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKTEDVTPNDRRNAK 710 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + G++ A+ Sbjct: 711 AVNF--------------GVVYGISDFGLAN----------------------------- 727 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 A + + + ++ + + + Sbjct: 728 -NLGISRKAAKDYIETYFERFPGIKNYMETIVREARD----------------------- 763 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + R D+ + R +Q + DIL Sbjct: 764 ---KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVA 811 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 M+N +A ++L VHDEIV E P+ + L M + A +PL A+ Sbjct: 812 MINLDRALTEENFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869 >gi|25028011|ref|NP_738065.1| DNA polymerase I [Corynebacterium efficiens YS-314] gi|23493294|dbj|BAC18265.1| putative DNA polymerase I [Corynebacterium efficiens YS-314] Length = 945 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 92/658 (13%), Positives = 189/658 (28%), Gaps = 137/658 (20%) Query: 33 FAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 A D + D P + L L + + H + V + Sbjct: 403 IAIVDTDRRAVVADLADITPEAEKALAGWLADEASPKLLHGAK---AVFHMLAGRGFELR 459 Query: 92 RW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + A + + + L + + Sbjct: 460 GIEHDTAIAAYLLRPGQRTYELADVY--------QRHLQRQLNPSNNGSNQLTLLDAGDS 511 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLN 208 + + +T ++ + ++ E+ + + G VDVA Sbjct: 512 QVLVDEAVAILELAGELTSQLQEINGFELYRDLEIPLLSILARMEATGIAVDVATLEEQL 571 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 + + T+ ++ L + ++L+T LF G+ T+ +T + + Sbjct: 572 ETFIDQVTREEEAARELAGDPTLNLSSPKQLQTVLFETFGMPKTKKTKTGYSTAAAEIEA 631 Query: 266 N--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 K P + +R + L L+ ++ SDGR+ T A TGR S Sbjct: 632 LAAKNPHPFLDHLLAHRQY-QKMKTT-LEGLIRSVGSDGRIHTTFNQTVA-STGRLSSTD 688 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLA 382 QN+P + + + +RS + EG L+ AD + Sbjct: 689 PNLQNIPVRTEAGRK-------------------------IRSGFVVGEGYETLLTADYS 723 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RV+A ++ + ++A+ GEDL+ ++ F+V VT + R K M L Sbjct: 724 QIEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFDVPIDGVTPELRRRVKAMSYGLV-- 781 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 GL+ + Sbjct: 782 ------------YGLSAFGLSQQ------------------------------LGIPAGE 799 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + + +++ ++ V E+ + + + Sbjct: 800 AKTIMESYFERFGGVQRYLAEVVEQARK--------------------------SGYTET 833 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 GR ++ ++ R +Q + DI+ M+ + Sbjct: 834 LFGRRRYLPELNSDN---RVARENAERAALNAP------IQGTAADIIKVAMIRVDRELR 884 Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + +L M + + +PL+ + + Sbjct: 885 ATGVKSRVLLQVHDELVVEIAPGELEQVQGILEREMDNAIT--LRVPLEVSAGSGRDW 940 >gi|167768074|ref|ZP_02440127.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1] gi|167710403|gb|EDS20982.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1] Length = 909 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 92/674 (13%), Positives = 179/674 (26%), Gaps = 134/674 (19%) Query: 17 TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76 + GI Y E+ + A + V L+ C + Q + + + + E Sbjct: 349 KEAGISIYKENDAMW-VALNTEGEEVYLFSCEGFGFITQDFLYEKIDDLYDNIGYVAMME 407 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARF 133 + + + A + K + KELI + Sbjct: 408 VKEHLSHLTIHEMTKSIFDVSLAAYLVNPLKSTYEYDDIARDYKSMM--LPSKKELIDK- 464 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCK----GDVTVTREIFKRLEPLSSKEQELWYLD 189 K + + + D E+ E + Sbjct: 465 -KHPMVTDGVLSDAGKKIMGYEAYISREAIQPLSDKLTELEMMDLYR---EIEIPTMFAL 520 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + RG VD + +L + + + ++L LF L Sbjct: 521 HDMEVRGIHVDSKALKGYGDQLVGRIEELQESIYKEAG-EEFNINSPKQLGVVLFDHMKL 579 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T+ +T VL + L P + R ++ + L + D R+ G Sbjct: 580 EGAKKTKTGYSTSVEVLEKIEHLYPIIPMILEYRQ-LTKLKSTYADGLANFIQDDQRIHG 638 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 + TGR S QN+P +R Sbjct: 639 KFNQ-TITATGRISSTEPNLQNIPIRMELGRA-------------------------IRK 672 Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 + EG + AD + IE RVLA ++ ++ + A+E +D++ T + F + +VT Sbjct: 673 VFLPEEGYIFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIHARTASEVFGIPMDEVTS 732 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 QR K + GL+ Sbjct: 733 TQRRDAKAVNF--------------GIIYGLS---------------------------- 750 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + + + + + RV E L E+ +G Sbjct: 751 --AFGLSQDLKISRKQAQEYIDRYFAMYPRVKEF---LDGEVEKGKTDGYVKTMFN---- 801 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 R ++ ++ R +Q + Sbjct: 802 -------------------RIRPIPELKSSNFMQRNF---GERVAMNSP------IQGTA 833 Query: 607 RDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAK 659 DI+ M+ + ++L +HDE++ ET + + + M + S Sbjct: 834 ADIIKIAMVRVNMKLKEKQMKSRLLLQIHDELLIETHLDEFEEVKEILQNEMMNAVS--L 891 Query: 660 GLPLKAEGYESKRY 673 +PL + + + Sbjct: 892 RVPLNIDIEQGASW 905 >gi|291525363|emb|CBK90950.1| DNA polymerase I [Eubacterium rectale DSM 17629] gi|291527050|emb|CBK92636.1| DNA polymerase I [Eubacterium rectale M104/1] Length = 903 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 102/651 (15%), Positives = 193/651 (29%), Gaps = 149/651 (22%) Query: 31 ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV-LKACFNLDIP 89 + + F + + C D + L E L +V + L + +I Sbjct: 356 LAVSICFSEEDIYFI-CTGDEISSSFLDEKLNTLEVKSW---ISPDLKTNLHRFKSKEIK 411 Query: 90 I---HRWICTLVLARSNGL---PSALKAVGEALK---LSSQKMEEGK----ELIARFCKG 136 R+ +V A AV + LSS+K GK +++ K Sbjct: 412 ADDRGRYFDMMVAAYLINPLVGEYPYDAVAKDYLGLMLSSKKDYLGKLDFTQMMKEDEKK 471 Query: 137 ETHECLYDRNKPNH--REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 Y+ + E D+ E L ++ + + Sbjct: 472 AVDCACYEVYTAWKSKPVLLQKLKE---MDMLTLYR---------DIELPLVFVLYDMEN 519 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 G D + V T+L++++ + ++L LF + GL E Sbjct: 520 EGIRADGIKLKEYGDKLAVSITELEKKIYEAAG-EEFNINSPKQLGVILFEKLGLPNEKK 578 Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 T+ +T VL P + R ++ + L + SDG++ TL Sbjct: 579 TKTGYSTAADVLEKLAPEYPIVADILEYRQ-LTKLKSTYADGLSGYIASDGKIHTTLNQ- 636 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 + TGR S QN+P + +R + Sbjct: 637 TITATGRLSSTEPNLQNIPIRIE-------------------------LGKLIRKVFLPE 671 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 EG V +D + IE RVLA ++G++ ++AF+ G+D++ +T + F+ +VT QR Sbjct: 672 EGDLFVDSDYSQIELRVLAALSGDERMIEAFKNGQDIHRSTASLVFDTPFDEVTDLQRRN 731 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + G++ Sbjct: 732 AKAVNF--------------GIVYGIS------------------------------AFG 747 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + + ++ K+ ++ E L Q +NG Sbjct: 748 LSNDLGISRKEAQGYIDSYFVKYPKIKEF---LDQTVLDAKKNGYTKTM----------- 793 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 GR ++ ++ R +Q + DI+ Sbjct: 794 ------------FGRIRPIPELNSSNFMQRQF---GERVAMNSP------IQGTAADIIK 832 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNP 655 M+ ++L VHDE++ ET + ++ +L M Sbjct: 833 IAMIRVHDRLLDEGLKSRLILQVHDELLIETKEAEKDKVIKLLEKEMRGAV 883 >gi|238923922|ref|YP_002937438.1| DNA polymerase I [Eubacterium rectale ATCC 33656] gi|238875597|gb|ACR75304.1| DNA polymerase I [Eubacterium rectale ATCC 33656] Length = 903 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 101/652 (15%), Positives = 194/652 (29%), Gaps = 149/652 (22%) Query: 31 ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV-LKACFNLDIP 89 + + F + + C D + L E L +V + L + +I Sbjct: 356 LAVSICFSEEDIYFI-CTGDEISSSFLDEKLNTLEVKSW---ISPDLKTNLHRFKSKEIK 411 Query: 90 I---HRWICTLVLARSNGL---PSALKAVGEALK---LSSQKMEEGK----ELIARFCKG 136 R+ +V A AV + LSS+K GK +++ K Sbjct: 412 ADDRGRYFDMMVAAYLINPLVGEYPYDAVAKDYLGLMLSSKKDYLGKLDFTQMMKEDEKK 471 Query: 137 ETHECLYDRNKPNH--REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 Y+ + E +++ E L ++ + + Sbjct: 472 AVDCACYEVYTAWKSKPVLLQKLKE------MNMLTLYR------DIELPLVFVLYDMEN 519 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 G D + V T+L++++ + ++L LF + GL E Sbjct: 520 EGIRADGIKLKEYGDKLAVSITELEKKIYEAAG-EEFNINSPKQLGVILFEKLGLPNEKK 578 Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 T+ +T VL P + R ++ + L + SDG++ TL Sbjct: 579 TKTGYSTAADVLEKLAPEYPIVADILEYRQ-LTKLKSTYADGLSGYIASDGKIHTTLNQ- 636 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 + TGR S QN+P + +R + Sbjct: 637 TITATGRLSSTEPNLQNIPIRIE-------------------------LGKLIRKVFLPE 671 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 EG V +D + IE RVLA ++G++ ++AF+ G+D++ +T + F+ +VT QR Sbjct: 672 EGDLFVDSDYSQIELRVLAALSGDERMIEAFKNGQDIHRSTASLVFDTPFDEVTDLQRRN 731 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + G++ Sbjct: 732 AKAVNF--------------GIVYGIS------------------------------AFG 747 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + + ++ K+ ++ E L Q +NG Sbjct: 748 LSNDLGISRKEAQGYIDSYFVKYPKIKEF---LDQTVLDAKKNGYTKTM----------- 793 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 GR ++ ++ R +Q + DI+ Sbjct: 794 ------------FGRIRPIPELNSSNFMQRQF---GERVAMNSP------IQGTAADIIK 832 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS 656 M+ ++L VHDE++ ET + ++ +L M Sbjct: 833 IAMIRVHDRLLDEGLKSRLILQVHDELLIETKEAEKDKVIKLLEKEMRGAVD 884 >gi|329117680|ref|ZP_08246397.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020] gi|326908085|gb|EGE54999.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020] Length = 879 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 95/666 (14%), Positives = 196/666 (29%), Gaps = 155/666 (23%) Query: 34 AFGFDDHPVELWD----CVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNL 86 AF + + + P + L E + + ++ VL + + Sbjct: 339 AFAWGNSDYIYVSKDSALLTGPSFTKRLAEPI-----------ATYDFKRSKVLLSHLGI 387 Query: 87 DIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 D+P + + + + + L + + ++ GK + F + E Sbjct: 388 DLPQANY-DARLANYLLSNIEDNELATIARLHTNLNMEADEVVYGKGVKRAFPEDEALFD 446 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 R + K V +++ E L + + G V+ Sbjct: 447 HLARKI-QVLVDSKAVIL-DKLAVNKEEDLYF------DIELPLANVLAKMEIAGITVNK 498 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256 + + L +E+ + + ++L + LF + L + T+ Sbjct: 499 TALQEMAEQNKAVIESLTEEIYEMAG-EEFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 557 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL + P ++ + R S+ + L + + SDG++ ++T Sbjct: 558 STAVDVLERLAPIAPIVAKILDYRQ-ISKLQSTYVIGLQDYIMSDGKIHTRYIQD-LTQT 615 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375 GR S QN+P +R + S E Sbjct: 616 GRLSSSDPNLQNIPVRLEQGR-------------------------LIRKAFLPSSEDAV 650 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV-TKDQRAIGKV 434 L+ +D + IE RVLA ++G++ + AF+ D++ +T R F + + T + R K Sbjct: 651 LLSSDYSQIELRVLAHISGDEHLIAAFKENADIHTSTAMRVFGIEKEEDVTPNDRRNAKA 710 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + G++ ++ Sbjct: 711 VNF--------------GIVYGISDFGLSN------------------------------ 726 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + + + +++ + E + + T Sbjct: 727 NLGITRKKAKDYIETYFERYPGIKEYMETVVRDARDT----------------------- 763 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 + R D+ + R +Q + DIL M Sbjct: 764 ---GYVETLFNRRRELPDINSRNF---NIRSFAERTAINSP------IQGSAADILKIAM 811 Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 +N KA ++L VHDEIV E P+ + ++ M A +PL A+ Sbjct: 812 INLDKALSEGQFKAKMLLQVHDEIVLEVPNDELEAIKALVKKTMEGAVDLA--VPLLADE 869 Query: 668 YESKRY 673 K + Sbjct: 870 NTGKTW 875 >gi|309810696|ref|ZP_07704504.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185] gi|308435327|gb|EFP59151.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185] Length = 905 Score = 283 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 105/667 (15%), Positives = 194/667 (29%), Gaps = 146/667 (21%) Query: 32 LFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 A + D + L E L + H++ L L + Sbjct: 357 GLAIADESGRAAYVDLTTLAPEDEQALAEWLADVTKAKALHDAKGPMHALA-ARGLTLAG 415 Query: 91 HRWICTLVLARSNGL---PSALKAVGEALKL----SSQKMEEGKELIARFCKGETHECLY 143 T + A + + + K G+ ++ G + Sbjct: 416 LT-NDTAIAAYLVRPDQRSYGFEDLLLRYCHIELPETSKQAAGQGMLDLGDVGA-TQGDD 473 Query: 144 DRNKPNHREAWRLFGEYCKGDV---TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 + + DV + E+ E + + T+ G VD Sbjct: 474 AMARAAAVATLAAALDEAVADVGGIELMAEL----------ELPIVEVLATMEQAGIAVD 523 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-- 258 + H L D + Q+ G + ++L+ LF GL T+T Sbjct: 524 LDALHELEADYDAQVVAAQQDAWDAIGGEQVNLGSPKQLQVVLFETLGLPKTKKTKTGYT 583 Query: 259 -CQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 ++ + P + +R AS+ + L++++ DGR+ T Q A+ Sbjct: 584 TDAEAIADLSEKAPHPFLDALLRHR-DASKLRST-VQGLIKSIGDDGRIHTTYQQTIAA- 640 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P + S +R + EG Sbjct: 641 TGRLSSTDPNLQNIPIRTESGRR-------------------------IRRVFVVGEGYD 675 Query: 376 -LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 L+ AD + IE RV+A ++G++ ++AF GEDL+ +R F V P++VT + RA K Sbjct: 676 CLMSADYSQIEMRVMAHLSGDEGLIQAFNDGEDLHRFVGSRVFGVEPSEVTSEMRAKVKA 735 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 M L Y + L Sbjct: 736 MSYGLAYG-----LSAFGLSKQL------------------------------------- 753 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 +R+ + ++ V + ++ T Sbjct: 754 --RISTAEAQRLMDGYFERFGGVRDYLRQIVDDARAT----------------------- 788 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 GR D+ ++ R +Q + DI+ + M Sbjct: 789 ---GYTETMMGRRRYLPDLTSDN---RQRRDMAERMALNAP------IQGSAADIMKKAM 836 Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667 + +A ++L VHDE++ E + + M + A +PL Sbjct: 837 LGVDEALRAANLRSRVLLQVHDELIVEVGAGERDEVERIVREQMGAAADLA--VPLDVNV 894 Query: 668 YESKRYR 674 + ++ Sbjct: 895 GTGRSWQ 901 >gi|157149813|ref|YP_001449466.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1] gi|157074607|gb|ABV09290.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1] Length = 880 Score = 283 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 97/655 (14%), Positives = 187/655 (28%), Gaps = 139/655 (21%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85 ++ A+ ++ Q L + ++ VL + + Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRAKVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +++P + + +L Q + + + + KG Sbjct: 388 IELP-AATFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEV--YGKGAKRALPEQE 443 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 H + + +L+ L EQ L ++ + G V+ Sbjct: 444 QLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLFEMEQPLAFVLAKMEIAGIKVERETLQ 503 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE---TTCQ 260 + + L QE+ L + ++L T LF + GL L T+ +T Sbjct: 504 GMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTGYSTAV 562 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL + P ++ R S+ + L EA+ +DG++ ++TGR S Sbjct: 563 DVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQTGRLS 620 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVA 379 QN+P +R + L+ + Sbjct: 621 SVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADSVLLSS 655 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELA 438 D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + R K + Sbjct: 656 DYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNF- 714 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ A+ Sbjct: 715 -------------GVVYGISDFGLAN------------------------------NLGI 731 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 A + + + ++ + + + Sbjct: 732 SRKAAKDYIQTYFERFPGIKNYMETIVREARD--------------------------KG 765 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 + R D+ + R +Q + DIL M+N Sbjct: 766 YVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVAMINLD 816 Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 +A ++L VHDEIV E P+ + L M + A +PL A+ Sbjct: 817 RALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869 >gi|257064003|ref|YP_003143675.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476] gi|256791656|gb|ACV22326.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476] Length = 878 Score = 283 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 87/604 (14%), Positives = 167/604 (27%), Gaps = 149/604 (24%) Query: 87 DIPIHRWICTLVLARSNGLP---SALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140 D+ + + A A A+ + L K ++ + Sbjct: 403 DVRHADYFDIGLAAYLLNSNTDVFAYDALADTYLASSLPETKDDDAAAAVHVLVAPRLVN 462 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 L + D + +++ +++ L + G +D Sbjct: 463 ALRE-----------------ALDKDGSADVYYKID------LPLVSTLTLMERVGAQLD 499 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ET 257 V + E L + L + ++L LF + GL T + Sbjct: 500 VDALAAMGSATRGEIDSLRAHIHELAG-EEFNVDSPKQLGVILFDKLGLPHGKKTRTGYS 558 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T L + + P A +V R ++ + ++ L DGR+ + TG Sbjct: 559 TNAATLKKLQSIHPIADEVLRYR-ELAKMSSTYIDALPRMRADDGRVHTHFNQTVTT-TG 616 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKL 376 R S QN+P + +R C + EG Sbjct: 617 RLSSSDPNLQNIPVRTDFGRR-------------------------IRECFVPLHEGDVF 651 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V AD + IE R+LA ++G++ + AF +G D + T AR F+V +VT R+ K + Sbjct: 652 VSADYSQIELRLLAHLSGDEHLVDAFCSGADFHAATAARVFDVPVDEVTPQLRSRAKAVN 711 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + + A Sbjct: 712 FGIV--------------------------------------------YGQQAFGLAQSL 727 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + + + + V L + E + G A+ Sbjct: 728 DIGFKEAQDMIDRYFEAYPGVRSY---LDKTVEDAKQTGYAVTM---------------- 768 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 GR ++ + R +Q + DI+ M Sbjct: 769 -------FGRKRHIPELKMRNAVQRGF---GERTAMNHP------MQGSAADIIKLAMNE 812 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 + ++L VHDE+ P + S + +M++ +PL + Sbjct: 813 VQRRLIEDGFESQLMLQVHDELDLSVPADELERLSDMVREVMSTIVE--LKVPLLVDVSS 870 Query: 670 SKRY 673 + Sbjct: 871 GPNW 874 >gi|332364041|gb|EGJ41819.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1059] Length = 880 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 100/660 (15%), Positives = 186/660 (28%), Gaps = 149/660 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85 ++ A+ ++ Q L + ++ VL + + Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140 +++P + + L + L + GK + E Sbjct: 388 IELPAAA-FDARLAKYLLSTVEDNELVTIARLYGQTILPTDDEVYGKGAKRALPEQEQLF 446 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 R E E +L+ L EQ L ++ + G V+ Sbjct: 447 KHLARKIQVLLETEEPMQEQ--------LRAHDQLDLLLEMEQPLAFVLAKMEIAGIKVE 498 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256 + + L QE+ L + ++L T LF + GL L T+ Sbjct: 499 RETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTG 557 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + P ++ R S+ + L EA+ +DG++ ++ Sbjct: 558 YSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQ 615 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374 TGR S QN+P +R + Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADS 650 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + R K Sbjct: 651 VLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAK 710 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + G++ A+ Sbjct: 711 AVNF--------------GVVYGISDFGLAN----------------------------- 727 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 A + + + ++ + + + Sbjct: 728 -NLGISRKAAKDYIETYFERFPGIKNYKETIVREARD----------------------- 763 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + R D+ + R +Q + DIL Sbjct: 764 ---KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVA 811 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 M+N +A ++L VHDEIV E P+ + L M + A +PL A+ Sbjct: 812 MINLDRALTEKNFNSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869 >gi|238650585|ref|YP_002916437.1| DNA polymerase I [Rickettsia peacockii str. Rustic] gi|238624683|gb|ACR47389.1| DNA polymerase I [Rickettsia peacockii str. Rustic] Length = 875 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 86/630 (13%), Positives = 181/630 (28%), Gaps = 146/630 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 + L + + + ++ +LK N I ++ + + K + + Sbjct: 377 IFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQKNLFK-- 431 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 K + +I K + + + + F Y D Sbjct: 432 --EVLKETWIENIIIESAKIVINFITLYKQTIWELKDNKTFRLYSNID------------ 477 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + ++ + G VD L+ E KL++E+ +L+ + Sbjct: 478 ------LPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTK-FNIGSP 530 Query: 237 EKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF + L + +T +L + + + ++ Sbjct: 531 KQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYT 590 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 ++L + +++ T ++ TGR S QN+P S Sbjct: 591 DSLPKQIDNITHRVHTKFLQTSTTTGRLSSQEPNLQNVPIRSSEGN-------------- 636 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R IA EG KL+ AD + IE R+L+ +A +AF +D++ Sbjct: 637 -----------QIRQAFIAKEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQ 685 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + FN+ ++T + R K + G++ Sbjct: 686 TACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS------------- 718 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 A + K + ++ V E + Sbjct: 719 -----------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFA--- 758 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 +N + GR + + + + R Sbjct: 759 -----------------------SSNGYVTNCFGRKCFVPLIHDKK-----LKQFAERAA 790 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ M+N K +VL +HDE++ E P + Sbjct: 791 INAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIIT 844 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++ +M + S +P+ E + Sbjct: 845 PIIKKIMEN--STNMDVPIITEIRAGNNWM 872 >gi|324996302|gb|EGC28210.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK678] Length = 880 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 97/655 (14%), Positives = 187/655 (28%), Gaps = 139/655 (21%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85 ++ A+ ++ Q L + ++ VL + + Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +++P + + +L Q + + + + KG Sbjct: 388 IELPAAA-FDARLAKYLL-STVEDNELATIARLYGQTILPTDDEV--YGKGAKRALPEQE 443 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 H + + +L+ L EQ L ++ + G V+ Sbjct: 444 QLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQ 503 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE---TTCQ 260 + + L QE+ L + ++L T LF + GL L T+ +T Sbjct: 504 GMQTENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTVLFEDMGLPLEYTKKTKTGYSTAV 562 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL + P ++ R S+ + L EA+ +DG++ ++TGR S Sbjct: 563 DVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQTGRLS 620 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVA 379 QN+P +R + L+ + Sbjct: 621 SVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADSVLLSS 655 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELA 438 D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + R K + Sbjct: 656 DYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNF- 714 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ A+ Sbjct: 715 -------------GVVYGISDFGLAN------------------------------NLGI 731 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 A + + + ++ + + + Sbjct: 732 SRKAAKDYIQTYFERFPGIKNYMETIVREARD--------------------------KG 765 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 + R D+ + R +Q + DIL M+N Sbjct: 766 YVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVAMINLD 816 Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 +A ++L VHDEIV E P+ + L M + A +PL A+ Sbjct: 817 RALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869 >gi|327490470|gb|EGF22252.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1058] Length = 880 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 98/660 (14%), Positives = 186/660 (28%), Gaps = 149/660 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85 ++ A+ ++ Q L + ++ VL + + Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140 +++P + + L + L + GK + E Sbjct: 388 IELPAAS-FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF 446 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 R E E +L+ L EQ L ++ + G V+ Sbjct: 447 EHLARKIQVLLETEEPMQEQ--------LRSHDQLDLLLEMEQPLAFVLAKMEIAGIKVE 498 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256 + + L QE+ L + ++L T LF + GL L T+ Sbjct: 499 RETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTG 557 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + ++ R S+ + L EA+ +DG++ ++ Sbjct: 558 YSTAVDVLERLAPIASIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQ 615 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374 TGR S QN+P +R + Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADS 650 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + R K Sbjct: 651 VLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAK 710 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + G++ A+ Sbjct: 711 AVNF--------------GVVYGISDFGLAN----------------------------- 727 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 A + + + ++ + + + Sbjct: 728 -NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARD----------------------- 763 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + R D+ + R +Q + DIL Sbjct: 764 ---KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVA 811 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 M+N +A ++L VHDEIV E P+ + ++ M + A +PL A+ Sbjct: 812 MINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRKLVKETMEAAIELA--VPLVAD 869 >gi|259506402|ref|ZP_05749304.1| DNA polymerase I [Corynebacterium efficiens YS-314] gi|259166009|gb|EEW50563.1| DNA polymerase I [Corynebacterium efficiens YS-314] Length = 904 Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats. Identities = 92/658 (13%), Positives = 189/658 (28%), Gaps = 137/658 (20%) Query: 33 FAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 A D + D P + L L + + H + V + Sbjct: 362 IAIVDTDRRAVVADLADITPEAEKALAGWLADEASPKLLHGAK---AVFHMLAGRGFELR 418 Query: 92 RW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + A + + + L + + Sbjct: 419 GIEHDTAIAAYLLRPGQRTYELADVY--------QRHLQRQLNPSNNGSNQLTLLDAGDS 470 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLN 208 + + +T ++ + ++ E+ + + G VDVA Sbjct: 471 QVLVDEAVAILELAGELTSQLQEINGFELYRDLEIPLLSILARMEATGIAVDVATLEEQL 530 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 + + T+ ++ L + ++L+T LF G+ T+ +T + + Sbjct: 531 ETFIDQVTREEEAARELAGDPTLNLSSPKQLQTVLFETFGMPKTKKTKTGYSTAAAEIEA 590 Query: 266 N--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 K P + +R + L L+ ++ SDGR+ T A TGR S Sbjct: 591 LAAKNPHPFLDHLLAHRQY-QKMKTT-LEGLIRSVGSDGRIHTTFNQTVA-STGRLSSTD 647 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLA 382 QN+P + + + +RS + EG L+ AD + Sbjct: 648 PNLQNIPVRTEAGRK-------------------------IRSGFVVGEGYETLLTADYS 682 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RV+A ++ + ++A+ GEDL+ ++ F+V VT + R K M L Sbjct: 683 QIEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFDVPIDGVTPELRRRVKAMSYGLV-- 740 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 GL+ + Sbjct: 741 ------------YGLSAFGLSQQ------------------------------LGIPAGE 758 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + + +++ ++ V E+ + + + Sbjct: 759 AKTIMESYFERFGGVQRYLAEVVEQARK--------------------------SGYTET 792 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 GR ++ ++ R +Q + DI+ M+ + Sbjct: 793 LFGRRRYLPELNSDN---RVARENAERAALNAP------IQGTAADIIKVAMIRVDRELR 843 Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + +L M + + +PL+ + + Sbjct: 844 ATGVKSRVLLQVHDELVVEIAPGELEQVQGILEREMDNAIT--LRVPLEVSAGSGRDW 899 >gi|260578014|ref|ZP_05845937.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734] gi|258603841|gb|EEW17095.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734] Length = 859 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 103/651 (15%), Positives = 185/651 (28%), Gaps = 156/651 (23%) Query: 42 VELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 + D + L E L N T H+S L L + T + A Sbjct: 341 AIVQDLADVDPKDEKVLAEWLANPQATKWLHDSKQTYHTL-QDQGLKLDGVE-HDTSLAA 398 Query: 101 RSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD--RNKPNHREAWR 155 L V + G EL E + + + R EA Sbjct: 399 YLLRPDVRTLGLADVVQRH--------VGHELSENATGPERAQAVAELVRALTPEIEAAG 450 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 Y D+ V + + + G VD A L+ Sbjct: 451 QAELY--FDLEVPLAL----------------ILAAMEHAGIAVDDAALQELSDDYGARL 492 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKL--T 270 + L + ++L+ LF L T+ +T L Sbjct: 493 NEEIAAARELAGEPELNLSSPKQLQKVLFETFDLPKTKKTKTGYSTAAAELEKLAAQSNH 552 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 P + +R + ++ L+EA+ DGR+ T GA+ TGR S QN+P Sbjct: 553 PFLGHLMAHR-EYQKMKST-IDGLIEAVGDDGRIHTTFNQKGAA-TGRLSSSDPNLQNIP 609 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVL 389 + + + +R+ EG L+ AD + IE RV+ Sbjct: 610 VRTDAGRK-------------------------IRAAFTVGEGYETLLTADYSQIEMRVM 644 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++ + ++A+ +GEDL+ +R F+V +VT + R K + L Sbjct: 645 AHLSEDAGLIEAYASGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLV--------- 695 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 GL+ + +K +R+ Sbjct: 696 -----YGLSAFGLSQQLKI------------------------------SAGEAKRIMDN 720 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + ++ V + + + ++T GR Sbjct: 721 YFERFGGVKRYLDHVVEVAKET--------------------------GYTETLYGRRRY 754 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623 ++ ++ R +Q + DI+ M+ + Sbjct: 755 LPELNSSN---RVARENAERAALNAP------IQGTAADIIKLAMLRVDREITRQQLASR 805 Query: 624 IVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + + L M + +PL + Sbjct: 806 VLLQVHDELVVEVAPGELEQITELVEREMDAAAQ--LRVPLDVSAGTGDSW 854 >gi|324990009|gb|EGC21950.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK353] Length = 880 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 95/655 (14%), Positives = 186/655 (28%), Gaps = 139/655 (21%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85 ++ A+ ++ Q L + + ++ VL + + Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQDFLSKTALKT-----YDLKRAKVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +++P + + +L Q + + + + KG Sbjct: 388 IELPAAA-FDARLAKYLL-STVEDNELATIARLYGQTILPTDDEV--YGKGAKRALPDQE 443 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 H + + +L+ L EQ L ++ + G V+ Sbjct: 444 QLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQ 503 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL--ETGLHLEDLTE---TTCQ 260 + + L QE+ +L + ++L T LF L T+ +T Sbjct: 504 GMQAENEKTLESLTQEIYNLAGQ-EFNINSPKQLGTILFEDMRLPLEYTKKTKTGYSTAV 562 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL + P ++ R S+ + L EA+ +DG++ ++TGR S Sbjct: 563 DVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQTGRLS 620 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVA 379 QN+P +R + L+ + Sbjct: 621 SVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADSVLLSS 655 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELA 438 D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + R K + Sbjct: 656 DYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIERAEDVTPNDRRNAKAVNF- 714 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ A+ Sbjct: 715 -------------GVVYGISDFGLAN------------------------------NLGI 731 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 A + + + ++ + + + Sbjct: 732 SRKAAKDYIETYFERFPGIKNYMETIVREARD--------------------------KG 765 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 + R D+ + R +Q + DIL M+N Sbjct: 766 YVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVAMINLD 816 Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 +A ++L VHDEIV E P+ + L M + A +PL A+ Sbjct: 817 RALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869 >gi|325695817|gb|EGD37714.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK150] Length = 880 Score = 283 bits (723), Expect = 9e-74, Method: Composition-based stats. Identities = 97/664 (14%), Positives = 186/664 (28%), Gaps = 145/664 (21%) Query: 28 VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ + D ++ Q L + ++ Sbjct: 326 FEILGDNYHKEEIVGLAWGDSRQIYVSTS--DLLQQPLFQEFLTKTALKT-----YDLKR 378 Query: 79 --VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136 VL + + +++P + + +L Q + + + + KG Sbjct: 379 AKVLLSHYGIELPAAA-FDARLAKYLL-STVEDNELATIARLYGQTILPTDDEV--YGKG 434 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 H + + +L+ L EQ L ++ + G Sbjct: 435 AKRALPDQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIAG 494 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDL 254 V+ + + L QE+ L + ++L T LF + GL L Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKK 553 Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 T+ +T VL + P ++ R S+ + L EA+ +DG++ Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD 612 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 ++TGR S QN+P +R + Sbjct: 613 -LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPE 646 Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQR 429 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + R Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + G++ A+ Sbjct: 707 RNAKAVNF--------------GVVYGISDFGLAN------------------------- 727 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 A + + + ++ + + + Sbjct: 728 -----NLGISRKAAKDYIETYFERFPGIKNYMETIVREARD------------------- 763 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + R D+ + R +Q + DI Sbjct: 764 -------KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADI 807 Query: 610 LAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 L M+N +A ++L VHDEIV E P + L M + A +P Sbjct: 808 LKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLVKETMEAAIKLA--VP 865 Query: 663 LKAE 666 L A+ Sbjct: 866 LVAD 869 >gi|38638673|ref|NP_944374.1| gp66 [Burkholderia phage Bcep1] gi|34486055|gb|AAQ73412.1| gp66 [Burkholderia phage Bcep1] Length = 655 Score = 283 bits (723), Expect = 9e-74, Method: Composition-based stats. Identities = 174/705 (24%), Positives = 282/705 (40%), Gaps = 85/705 (12%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLK 58 LF+DFET S DLT+ G+ +Y +D + F F +LW+ +P+ + Sbjct: 4 RLLFLDFETSSHTDLTEHGLGRYLDDPSTRAYCFTFRLPGMSTADLWEV--GQPVPKQII 61 Query: 59 EALENTDVTIVAHNSYFER----TVLKACFNL----DIPIHRWICTLVLARSNGLPSALK 110 L VAHN+ F+ TVL+ ++ I + C+ AR NGLP +L Sbjct: 62 GHLN--GSPFVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLA 119 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 EAL L QK EG + + D +H E + +Y D Sbjct: 120 GACEALGLPVQKDTEGAKWMKEIAANP------DWTPADHPEHFTRTYKYALIDTDAMVG 173 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +++ PL ++EQ + +D IN RG VDV A + + +LD E+ LT G + Sbjct: 174 VWENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGI 233 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + + K+K + G ++D T +++ ++ L Q+ R+ ASR+ K Sbjct: 234 LAVTEVAKIKEYA-ATLGEDMDDAGRETLKKI-AARDNLPDSLRQLIELRLDASRAP--K 289 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL----PRPSRSHEELDQIITHL 346 + + + GRL+ + GA + Q L PRP + + + I+ Sbjct: 290 KSAAILRAHVGGRLQHHTIYHGALSGRSTARGAGGAQTLNTARPRPGKKTADCEAILDAC 349 Query: 347 PTSITSD------PDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + L ++D R A G LV ADL+GIEAR+ W+A + KL Sbjct: 350 LRGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPKL 409 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AFE G D Y +++ VTKDQR +GKV +LALG+ GG AF MA+ G++L Sbjct: 410 EAFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKVADLALGFGGGDGAFASMAANYGVHL 469 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + WR Sbjct: 470 PPEQVS---------------------------------------EIVYNWRAGRPAFER 490 Query: 520 LWNELHQAFEQTIE--NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--- 574 W+ + ++ + ++ R + +D L + LPSGR++ Y + Sbjct: 491 WWSLCEYSVLMALDQPGREVVMPVGRDFCSQITFVRDARALRMHLPSGRAISYHNARLHL 550 Query: 575 --NNRSYLNTTTRQLTREYTYGGKLT-ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 + + T K+ N Q ++RD+ +++ + +IV V+DE Sbjct: 551 EPGANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRVE-EIVHHVYDE 609 Query: 632 IVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + E + L M +W GLPL AEG+ R+RK Sbjct: 610 ALLEVLAELAALRQKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654 >gi|120404335|ref|YP_954164.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1] gi|119957153|gb|ABM14158.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1] Length = 909 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 107/678 (15%), Positives = 200/678 (29%), Gaps = 156/678 (23%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKAC 83 A D A D D + L L + D H + L Sbjct: 354 AFDSDATAVALVASDGDGRYIDTTRLDPEDEKALASWLADPDAPKALHEAK-----LAMH 408 Query: 84 FNLDIPIHRWI------CTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFC 134 D+ W T + A AL + K + Sbjct: 409 ---DLQGRGWTLAGVTSDTALAAYLVRPGQRSFALDDLSLRY---------LKRELRADN 456 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS------KEQELWYL 188 + L D + +A + V + + + L + S E + + Sbjct: 457 PEQQQLSLLDDSDAVDDQAVQTLLLRAGAVVDLADALDEELARIDSSALLGSMELPVQRV 516 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G VD+A+ L + + ++ + + ++L+ LF E Sbjct: 517 LAQLETVGIAVDLAMLSELQSEFAGQIRDAAEAAYAVIGKQI-NLGSPKQLQVVLFDELE 575 Query: 249 LHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 + T+T T L S P + +R A+R V ++ L+ ++ +DGR Sbjct: 576 MPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHR-DATRLKVT-VDGLLNSVAADGR 633 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + T A+ TGR S QN+P + + Sbjct: 634 IHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEAGRR------------------------- 667 Query: 364 VRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG L+ AD + IE R++A ++ + ++AF TGEDL+ +R+F+V Sbjct: 668 IRDGFVVGEGYADLMTADYSQIEMRIMAHLSKDAGLIEAFNTGEDLHSFVASRAFSVPLD 727 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT + R K M L GL+ + +K Sbjct: 728 EVTPELRRRVKAMSYGL--------------AYGLSAYGLSQQLKI-------------- 759 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + + + + V + ++ + Sbjct: 760 ----------------STEEAKEQMEQYFARFGGVRDYLRDVVDQARK------------ 791 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 + GR ++ ++ R + Sbjct: 792 --------------DGYTSTVFGRRRYLPELDSSN---RQVREAAERAALNAP------I 828 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655 Q + DI+ M+N +A ++L VHDE++ E D + L M S Sbjct: 829 QGSAADIIKVAMINVDQAIKEAGLSSRMLLQVHDELLFEVADGERDALDALVREHMGSA- 887 Query: 656 SWAKGLPLKAEGYESKRY 673 + +PL+ + + Sbjct: 888 -YRLDVPLEVSVGYGRSW 904 >gi|171777578|ref|ZP_02919266.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283187|gb|EDT48611.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 884 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 89/680 (13%), Positives = 185/680 (27%), Gaps = 163/680 (23%) Query: 28 VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ F + + D + + K AL ++ Sbjct: 330 FEILGDNYHVENIIGFAWGNDKAIYASTNLDLLKDDLFKAALAKP--IKT-----YDFKR 382 Query: 79 --VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136 VL + +D+P + + + ++ L + Sbjct: 383 SKVLLSHLGIDLP-APAFDSRLAKYLLS------------TVDDNELSTIARLYTEYVLD 429 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-------EIFKRLEPLS--SKEQELWY 187 K + L + V + ++ + + EQ L Sbjct: 430 SDEAVYGKGAKRAVPDKAVLLSHLARKIVVLNHSEKAMLDKLTEHQQASLLFDMEQPLAN 489 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + G V + + +L QE+ L + ++L LF + Sbjct: 490 VLAKMEIAGISVKKETLQDMEKANQAVIDELTQEIYDLAGM-EFNINSPKQLGELLFDKM 548 Query: 248 GLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 L T+ +T VL ++P ++ R ++ + L + + DG Sbjct: 549 QLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQ-IAKLQSTYIVGLQDFILKDG 607 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 ++ ++TGR S QN+P Sbjct: 608 KIHTRYLQD-LTQTGRLSSVDPNLQNIPVRLEQGR------------------------- 641 Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R + + L+ +D + IE RVLA ++ ++ + AF G D++ +T R F + Sbjct: 642 LIRKAFVPETADEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEK 701 Query: 422 -AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 VT + R K + G++ A+ Sbjct: 702 AEDVTPNDRRNAKAVNF--------------GIVYGISDYGLAN---------------- 731 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 ++ + + +++ + + + + + Sbjct: 732 --------------NLGIPRKVAKQYIETYFERYPGIKDYMERVVRDAKD---------- 767 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 + R D+ + R Sbjct: 768 ----------------KGYVETLFHRRRELPDINARNFNVRQ---FAERTAINSP----- 803 Query: 601 IVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTS 653 +Q + DIL M+N KA ++L VHDEI+ E P + L M S Sbjct: 804 -IQGSAADILKIAMINLDKALVDGRFKTKMLLQVHDEIILEVPKDELEAIEKLVKETMES 862 Query: 654 NPSWAKGLPLKAEGYESKRY 673 +PL A+ + + Sbjct: 863 AIE--LSVPLVADESAGQTW 880 >gi|134288571|ref|YP_001110810.1| DNA polymerase [Salmonella phage SETP3] gi|125631936|gb|ABN47339.1| DNA polymerase [Salmonella phage SETP3] gi|126015336|gb|ABN70699.1| DNA polymerase [Salmonella phage SETP5] gi|126015338|gb|ABN70700.1| DNA polymerase [Salmonella phage SETP12] Length = 1032 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 142/441 (32%), Positives = 222/441 (50%), Gaps = 18/441 (4%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L++D ET S DL K G YAE +++ + FD+ PV++WD MP+ L+ Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 A+ ++++ +V N F+R V+K C+ ++ + I T+++A + LP +L ++ Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRLVIKHCWGFELLVENIIDTMIVAFRHALPGSLASL 120 Query: 113 GEALKLS--SQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169 E L + K + GK LI RF K R H + W F Y K D+T R Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTAATHPKEWAEFIAYAKSDITSMR 180 Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E++K++ S E + +LDQ INDRG+ VDVALA + V + +L +E + Sbjct: 181 EVYKKMPKWGNSEFEDRVLWLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRKYG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G ++ L L+ + + ++T +L+ + L A + R+ A+ +A Sbjct: 241 GSLTGKDFLPILQELAPAH---RIHNAQKSTLNDLLAD-EDLPDDARTIIEMRLGAASTA 296 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH-L 346 K L+ +SD R RG LQ+ GA RT RW+G F PQNL R +ELD+ I L Sbjct: 297 STKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAALL 356 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D ++ + VRSC+I G+K VVAD + +E R LAW+AGE+ L F G Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416 Query: 407 DLYVTTYARSFNVAPAQVTKD 427 D+Y T + F + P + K+ Sbjct: 417 DIYCVTAGKMFGMDPDDIKKE 437 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 93/292 (31%), Positives = 124/292 (42%), Gaps = 45/292 (15%) Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ-- 486 + EL LGY+GG AF A GL+L A + W W + Sbjct: 741 FLVAHNCELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQ 800 Query: 487 ----------ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG- 535 ++ I D + C+ +K+ WR+ H W +L + N Sbjct: 801 EAKRPPHPGEKDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPG 860 Query: 536 --------------KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS--- 578 +AI + + K L + LPSGR L Y +G + + Sbjct: 861 REFWAGAHLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKET 920 Query: 579 ---------------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623 N TRQ T YT+GGK ENIVQA+ RD+LA M+N GY Sbjct: 921 DEDGRINTNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYP 980 Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IVL+VHDE+VCETPDT ++ + L LM + P WA G PL AEG E KRY K Sbjct: 981 IVLSVHDELVCETPDTPDYTVAELEKLMCALPGWADGFPLVAEGAELKRYAK 1032 >gi|42522378|ref|NP_967758.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100] gi|39574910|emb|CAE78751.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100] Length = 863 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 83/608 (13%), Positives = 164/608 (26%), Gaps = 146/608 (24%) Query: 75 FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134 ++ P+ W + + A + + + + + Sbjct: 389 YDLKSFWHKIGAKTPVAAW-DSQLAAYVLKAGDTSDFAKIYTRFMADVLPDLASPSQLYN 447 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 + Y + D L + ++ Sbjct: 448 AQLNFATTLKSQLQTVQGE----KVYQELD------------------LPLARVLLSMER 485 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 G +D L ++ + + ++++++ + ++L LF + GL Sbjct: 486 LGVRIDKDLLAKQSEELAKDIAEIEKQIHEAAG-ESFNVGSPKQLGVILFEKLGLPAGKK 544 Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQF 310 T+ +T + VL P A V S+ ++ L ++ D R+ + Sbjct: 545 TKTGYSTDEEVLLGL--EHPIAKLVLQ-WREMSKLKSTYVDALPTMIDPKDERVHTSFNQ 601 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 + TGR S QN+P + VR IA Sbjct: 602 ALTT-TGRLSSTQPNLQNIPIRTARG-------------------------QQVRKAFIA 635 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 + KL+ D + IE R+LA ++ + KAF D++ T A F V VT + R Sbjct: 636 APRMKLLSVDYSQIELRILAHISEDPNLCKAFAEDLDIHAATAAEVFGVPLKDVTAEHRR 695 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 A NF + Sbjct: 696 SA--------------------------------------------KAVNFGIAYGQGAF 711 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 A T + + + + + V E + + + Sbjct: 712 GLAENLGISRTEAKDIIERYFNRFKNVREYIDGTIKMAHE-------------------- 751 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + GR ++ + L + R +Q + D++ Sbjct: 752 ------KGYVETLFGRRRYIDELQSKNMALK---KFGERAAINAP------IQGTASDLV 796 Query: 611 AEGMMNA-TKAGYDIVLTVHDEIVCETPDTDEFNASM----LYHLMTSNPSWAKGLPLKA 665 + M+ K ++L VHDE++ E E N L +M + +PLK Sbjct: 797 KKAMIEVFEKVPVRMLLQVHDELIFE---DFEENLQKHSPQLVSIMENVMK--LKVPLKV 851 Query: 666 EGYESKRY 673 + Sbjct: 852 NYAIGNNW 859 >gi|68171574|ref|ZP_00544948.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa] gi|88658019|ref|YP_506910.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas] gi|67999000|gb|EAM85677.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa] gi|88599476|gb|ABD44945.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas] Length = 944 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 91/659 (13%), Positives = 186/659 (28%), Gaps = 146/659 (22%) Query: 22 CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81 D + + + D + D H +++K L V V ++ L Sbjct: 416 YMEMADNVIDSVSLSYKDDILLYIDKDHVTDALELIKPVLGLNYVLKVI----YDVKTLL 471 Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 D+ I + ++++ +E+I K + Sbjct: 472 KVIP-DVEIVAFDDIMIMSYILSPSVH--------------DHSLQEIINYNVKQDVVNV 516 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 + + V I++R+E + ++ G +D+ Sbjct: 517 KTAITLLLLHKLLKKNLF-----VNQLYTIYERVEKPL------IRVLDSMEKVGMLIDI 565 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---- 257 + TL+ + + L+ E+ L + ++L T LF + G+ + Sbjct: 566 DILKTLSSTFSEKVSVLENEIYRLAGT-EFNIASSKQLGTVLFDKMGIKKSKKLSSGSYS 624 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL+ + ++ + L + +NS+ T + ++ TG Sbjct: 625 TDAEVLNDLVFNEIEIADKILQWRHFTKLKSTYTDALGKQINSNSGRIHTFYSMISTATG 684 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P S +R +A +G KLV Sbjct: 685 RLSSSNPNLQNIPIRSEEGNA-------------------------IRRAFVARKGYKLV 719 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A +AG Q AF +D++ T + F + K+ R K + Sbjct: 720 SADYSQIELRIMAHIAGVQAFKDAFFLDQDIHSITAEQIFCT--QSLDKNLRRKAKSIN- 776 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 G++ A + Sbjct: 777 -------------FGIIYGMS------------------------------AFGLAKQLG 793 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + + + + N + + Sbjct: 794 ISRSEANAYIDNYFKSYPEIQSYMNNIKIYAKT--------------------------Y 827 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 GR RD+ ++ + + R Q S DI+ M++ Sbjct: 828 GYTRTIFGRKCFIRDINSSNAAARNFS---ERAAINAPL------QGTSADIIKMSMIHL 878 Query: 618 TKAGYD--IVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + ++ +M +PLK + + Sbjct: 879 FDKITHGSLILQVHDELLFEILEEYVDYAVEVITKVMEGIVK--LSVPLKVDIRIGTNW 935 >gi|29839896|ref|NP_829002.1| DNA polymerase I [Chlamydophila caviae GPIC] gi|29834243|gb|AAP04880.1| DNA polymerase I [Chlamydophila caviae GPIC] Length = 869 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 101/656 (15%), Positives = 192/656 (29%), Gaps = 129/656 (19%) Query: 30 VILFAFGFDDHPVELWDCVHD-PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 ++ A DD V D H + L+ D T +N + LK + + Sbjct: 328 LMGVALASDD-DVYYVDIEHALDDVLTPLQYFFRREDTTFYGYNIKRDNHALKNA-GIHV 385 Query: 89 PIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + + + + + L S GKE + Sbjct: 386 HNIAL-DLALAEHLINGGAKISYQTLLMDHGLVSSAGRYGKEWGQLSLPIAKSPANPAQY 444 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 + +I + + E L + TI G +DV Sbjct: 445 FGGFVSHLPKIKKSLLE----ELKIKGVEDLFFNMEMPLEKVLFTIERNGMPLDVEDLQE 500 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266 L +I+ E L ++ +L + + ++L L+ + GL D +T VL + Sbjct: 501 LERILSEELAMLTDDIYTLAGAP-FNIKSPKQLSEVLYNKLGLKPIDKARSTKAEVLEAL 559 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFP 325 ++ R + + L ++ R+ T +G + TGR + Sbjct: 560 SGEHEIIEKILAFR-AVEKLLSTYVKALPRQVDPSTSRIHPTFNQMG-TVTGRLACQDPN 617 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI-ASEGKKLVVADLAGI 384 QN+P S +R + + AD + I Sbjct: 618 LQNIPIRSERGR-------------------------LLRKAFCNTHQNNYFLSADYSQI 652 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R LA ++ ++ AFE+ ED++ T ++ F+V +VTK QR K + Sbjct: 653 ELRFLAHLSQDESLKLAFESREDIHTFTASQVFHVPLEEVTKQQRMQAKTVN-------- 704 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 G + + + + Sbjct: 705 ------FGIIYG------------------------------QQAYGLSKILKISVSEAQ 728 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 ++ A+ ++ V+ NE + NL + Sbjct: 729 KLIDAYFDRYPEVARFINETVSQACE--------------------------NLRVKTLL 762 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------T 618 GR R N T +R + G +Q + +++ M+ Sbjct: 763 GR---------ERIIDNWTEFSNSRAAS-GRLAVNTRIQGSAAELIKLAMLQLSDALEKR 812 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 K ++L +HDE++ E P+ ++ L +M S +PL K + Sbjct: 813 KLKSRMLLQIHDELIFEVPEEEKEEMQTLVRDIMESAM--ILSVPLVVNILIGKNW 866 >gi|323339592|ref|ZP_08079866.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644] gi|323092987|gb|EFZ35585.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644] Length = 885 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 93/633 (14%), Positives = 184/633 (29%), Gaps = 130/633 (20%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + L+E LEN + T+ + LK ++ L+++ +G+ Sbjct: 365 EPLREFLENKNKTLDVFDGKKTYVSLKR-LGIEAESID-FDLLLVSYLLNNTDNSNDLGQ 422 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 Q K + KG E D H + + K + +++ Sbjct: 423 LC--QKQGYFGVKSDDEVYGKGAKKEICADETFFEHLRSKVFAIAFLKQ--KLMQKLKDN 478 Query: 175 LEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + E E + + G D T+ + + L+ + + Sbjct: 479 SQDHLYFEIERPLSIVLAKMEIAGIKADKETLETMGSRFKEKISDLESLIYQEAG-ETFN 537 Query: 233 SRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L T LF + GL T+ +T VL + V R ++ Sbjct: 538 INSPKQLGTILFDKLGLPGAKKTKTGYSTAVGVLEKLRG-NDIVDNVLLYRQ-FAKLKST 595 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 ++ L++ M+ D ++ + TGR S QN+P + Sbjct: 596 YIDGLIKVMDQDEKVHTR-YTQTLTTTGRLSSVEPNLQNIPVRLEEGRK----------- 643 Query: 350 ITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 +R I S +G ++ +D + IE RVLA ++ ++ KAF+ D+ Sbjct: 644 --------------IRQAFIPSHQGWEIFSSDYSQIELRVLAHISKDENMQKAFKDDFDI 689 Query: 409 YVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + T + F ++ P +VT + R K + G++ A + Sbjct: 690 HANTAMKIFGLSSPDEVTPNMRRQAKAVNF--------------GIVYGISDFGLAQSI- 734 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + + + V E+ + Sbjct: 735 -----------------------------GCRRDQAKTFMETYFESFPGVKRYMTEIVEL 765 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + R + + Sbjct: 766 ARN--------------------------QGYVETLFKRRRYLEGIRSKNF---NQRSFA 796 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDE 641 R +Q + DI+ M+ + ++L VHDE++ E P+ + Sbjct: 797 ERTAMNTP------IQGSAADIIKVAMIKMQETLEKEELKARMLLQVHDELIFEAPEEEI 850 Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 L +M S +PLK E K + Sbjct: 851 PVLEKLVPSVMDSAVK--LDVPLKVESGHGKTW 881 >gi|290992757|ref|XP_002679000.1| DNA polymerase I [Naegleria gruberi] gi|284092615|gb|EFC46256.1| DNA polymerase I [Naegleria gruberi] Length = 1085 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 82/714 (11%), Positives = 181/714 (25%), Gaps = 181/714 (25%) Query: 32 LFAFGFDDHPVELWDCVHDP--------------VMPQVLK-EALENTDVTIVAHNSYFE 76 +F + ++ E +EN ++ + HN + Sbjct: 477 GISFCISPGQAYYLPFFKGGKVEFLDSVNILKESPILSKVRTEIMENPNILKIGHNIKYH 536 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA---RF 133 +L + + + +V++ ++ E L+ Sbjct: 537 IKMLANY---GVTVKNFDDIMVMSYVLN--------CGKHGHEMDEIVENVLLLDPKEHI 585 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KE 182 + + + + +T++ + L+ E Sbjct: 586 IPEKEVLGIGKKKVTLMEADIVSVVHFACQHADLTKQAYDVLKSALDKSPKLTQFYEGIE 645 Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG-------------- 228 + L I +G +D + + + ++ Sbjct: 646 KPLVETLAGIEMKGVFMDEPALVKMENEYREKIKAIGNKIREDAGYPTIDEDIEIPTSEE 705 Query: 229 -----------------LVSSSRCLEKLKTWLFLETGLHLEDLTETT-------CQRVLS 264 + +L +F + G+ L + T VL Sbjct: 706 EIESMIIEMDEMKQEASEEFNINSNRQLGQVIFEKLGI-GTKLRKKTKVGDYILNAEVLQ 764 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + ++ ++ L + +N + T + TGR S + Sbjct: 765 KLAAEGHSIAKHILEYRALTKLYSTYISGLRQHINPYTKRIHTTFQNALTVTGRLSSVMP 824 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI-ASEGKKLVVADLAG 383 QN+P + + +R C I S+ ++ D + Sbjct: 825 NIQNIPVRTAEGK-------------------------QIRRCFISPSDDYVIMKVDYSQ 859 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 +E R+LA +A AF+ +D++ T ++ FNV QV K R K + + Y Sbjct: 860 VELRILAHIANIPVLKNAFKENKDVHAITASQVFNVPLDQVDKSTRNKAKAINFGIIYGM 919 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + + + ++T A +++ +N+ E +H + C Sbjct: 920 S-----EFGLSKRIGVDTQAAKSFIEQYFKQYPGIKNYMTKTIEFCRKHGYVNTLFNRRC 974 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + G +R + + + + Sbjct: 975 WI---------PGIED------------QGFGGKSSFGERTSINTPIQGTSADITKIAM- 1012 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623 S + R I+Q Sbjct: 1013 -------------NSLHKAFQEKGLRTRM--------IIQ-------------------- 1031 Query: 624 IVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSW---AKGLPLKAEGYESKRY 673 VHDEIV E P + ++ LM + +PL E ++ Sbjct: 1032 ----VHDEIVFEVPKDEVETVEPIIKELMEGAAFFGGTNFTVPLTVEATVDSKW 1081 >gi|302336109|ref|YP_003801316.1| DNA polymerase I [Olsenella uli DSM 7084] gi|301319949|gb|ADK68436.1| DNA polymerase I [Olsenella uli DSM 7084] Length = 922 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 86/610 (14%), Positives = 155/610 (25%), Gaps = 159/610 (26%) Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 D+ R V + L R Sbjct: 445 DVDHRRVFDVAVAGYLLDSD---------------------------AASFSVADLVSRE 477 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRG 196 D + L ++ L + + G Sbjct: 478 MDMSLPEPTDELPQAALDAVGAWALCPLLARRLEEDGSKGLFCDLEMPLLRVLLQMERTG 537 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----- 251 D ++ + E + +++ + ++L LF GL Sbjct: 538 LHADAGRLAEQSRELGSEIDCMVATIKAD-ADEDFNMDSPQQLSHVLFDVWGLPTFGLKR 596 Query: 252 -EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 + +T + L + + + + R ++ L+ L + DGR+ TL Sbjct: 597 TKKGFYSTNAKTLEDLAQQDGRVRMILDYR-ERAKIKSTYLDALPADIRRDGRIHTTLNQ 655 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 A+ TGR S QN+P S + VR+ Sbjct: 656 TVAA-TGRLSSSAPNLQNIPTRSE-------------------------LGHRVRTAFTV 689 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 EG + D + IE R+LA ++ + + AF +G D + T AR F V +VT R+ Sbjct: 690 PEGSVFLACDYSQIELRLLAHLSADGHLVGAFNSGADFHAATAARVFGVPVEEVTPQLRS 749 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + + Sbjct: 750 RAKAVNFGIV--------------------------------------------YGQQAF 765 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 A + + + + + V L Q+ + + G A+ Sbjct: 766 GLASSLRIGRAEAQEMIDRYFEAYPGVRAY---LDQSVDFARKRGYAVTMY--------- 813 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 GR RD+ R +Q + DI+ Sbjct: 814 --------------GRKRHIRDINARNF---QLRSFAERTAMNHP------MQGTAADII 850 Query: 611 AEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663 M+ + +VL +HDE+ E P + S L M +PL Sbjct: 851 KLAMVRVAERLRQEGLRSKLVLQIHDELDFEVPKDEIEVLSKLVKETMEGVCE--LRVPL 908 Query: 664 KAEGYESKRY 673 A+ + Sbjct: 909 LADVSYGANW 918 >gi|225027062|ref|ZP_03716254.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353] gi|224955526|gb|EEG36735.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353] Length = 878 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 83/643 (12%), Positives = 176/643 (27%), Gaps = 141/643 (21%) Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH--RWICTLVLARSNGLPS 107 + + + + E L+ IV + L F+ ++ + + + A Sbjct: 354 EDYLKEKITELLKEGTELIVL-----DYKALL-HFSEEVREYESQIQDVGIQAYLLNPLQ 407 Query: 108 A---LKAVGEALK---LSSQKMEEGKE-LIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + + L S+K GK+ L F + E Sbjct: 408 SAYDYEDIARDYLRQMLPSRKEVCGKKALEEVFSQEEEKTVQMAAYLSYVPFHAYPLVLE 467 Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + + E++ + E+ + G V+ + +L++ Sbjct: 468 KLREAEME-ELY------LTIERPTVATLYDMEKYGITVEKDALKEYGDQLVGRIEELEK 520 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277 + + ++L LF + + T+ +T +L P + Sbjct: 521 NIYEQAG-KTFNINSPKQLGVILFEDLKMPFAKKTKTGYSTSADILEKLAPDYPIVSNIL 579 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R ++ + L + DG++ + TGR S QN+P Sbjct: 580 EYRQ-LTKLKSTYADGLAAFIQEDGKIHSIFHQKV-TATGRLSSSDPNLQNIPIRMPLGR 637 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +R + G V AD + IE RVLA MAG++ Sbjct: 638 A-------------------------IRKVFVPDSGYVFVSADYSQIELRVLAHMAGDEH 672 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + A+ GED++ T ++ F V +VT R K + G+ Sbjct: 673 LIDAYRHGEDIHRMTASQVFGVPFEEVTPLLRRSAKAVNF--------------GIVYGI 718 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + + + + + Sbjct: 719 S------------------------------AFGLSQDLKISRKEASEYIDKYFATYPGI 748 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + ++ + GR ++ ++ Sbjct: 749 KTYLDGNVAFAKK--------------------------EGYVKTLYGRVRPIPELSSSN 782 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631 + R + +Q + DI+ M+ K ++L +HDE Sbjct: 783 FMQRSF---GERVAM------NSSIQGTAADIIKIAMIRVSKRLQEEKLASRLILQIHDE 833 Query: 632 IVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ ET + + + M +PL + E K + Sbjct: 834 LLIETKEDEVEEVRKILKEEMMGAAD--LKVPLSIDIEEGKTW 874 >gi|118462804|ref|YP_882339.1| DNA polymerase I [Mycobacterium avium 104] gi|118164091|gb|ABK64988.1| DNA polymerase I [Mycobacterium avium 104] Length = 913 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 102/673 (15%), Positives = 195/673 (28%), Gaps = 146/673 (21%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKAC 83 A D A D D + L L + H + L Sbjct: 358 AYDADCTALAIVSADGEGRYIDTSALDPDDEAALASWLADPGPPKALHEAK-----LAMH 412 Query: 84 FNLDIPIHRWI------CTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARF 133 D+ W T + A +L + L+ + ++ ++ Sbjct: 413 ---DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRYLRRELRAENPQQQQLSLL 469 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193 + + + A + D + R L + + + Sbjct: 470 DDTDGTDDQAVQTLILRAVAVLDLAD--ALDEELARINSTSLLSGME--LPVQRVLAGME 525 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G VD+ L L + + ++ + + ++L+ LF E + Sbjct: 526 KAGIAVDLDLLSELQSDFAHQIRDAAEAAYAVIGKQI-NLGSPKQLQAVLFDELQMPKTK 584 Query: 254 LTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 T+T T L S P + +R A+R V ++ L+ ++ SDGR+ T Sbjct: 585 RTKTGYTTDADALQSLFDKTGHPFLQHLLAHR-DATRLKVT-VDGLLNSVASDGRIHTTF 642 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 643 NQTIAA-TGRLSSTEPNLQNIPIRTEAGRR-------------------------IRDAF 676 Query: 369 IASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + +G +L+ AD + IE R++A ++ + ++AF TGEDL+ +R+F V +VT + Sbjct: 677 VVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGE 736 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K M L GL+ + +K Sbjct: 737 LRRRVKAMSYGL--------------AYGLSAYGLSQQLKI------------------- 763 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + A+ + V + + + + + Sbjct: 764 -----------STEEAKEQMDAYFARFGGVRDYLHAVVEQARK----------------- 795 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + GR ++ ++ R +Q + Sbjct: 796 ---------DGYTSTVLGRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAA 837 Query: 608 DILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKG 660 DI+ M+ KA I+L VHDE++ E + L M + Sbjct: 838 DIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALARDKMGGA--YPLD 895 Query: 661 LPLKAEGYESKRY 673 +PL+ + + Sbjct: 896 VPLEVSVGYGRSW 908 >gi|317499365|ref|ZP_07957633.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA] gi|316893334|gb|EFV15548.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA] Length = 879 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 92/674 (13%), Positives = 179/674 (26%), Gaps = 134/674 (19%) Query: 17 TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76 + GI Y E+ + A + V L+ C + Q + + + + E Sbjct: 319 KEAGISIYKENDAMW-VALNTEGEEVYLFSCEGFGFITQDFLYEKIDDLYDNIGYVAMME 377 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARF 133 + + + A + K + KELI + Sbjct: 378 VKEHLSHLTIHETTKSIFDVSLAAYLVNPLKSTYEYDDIARDYKSMM--LPSRKELIDK- 434 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCK----GDVTVTREIFKRLEPLSSKEQELWYLD 189 K + + + D E+ E + Sbjct: 435 -KHPMVTDGVLSDAGKKIMGYEAYISREAIQPLSDKLTELEMMDLYR---EIEIPTMFAL 490 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + RG VD + +L + + + ++L LF L Sbjct: 491 HDMEVRGIHVDSKALKEYGDQLVGRIEELQESIYKEAG-EEFNINSPKQLGVVLFEHMKL 549 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T+ +T VL + L P V R ++ + L + D R+ G Sbjct: 550 EGAKKTKTGYSTSVEVLEKIEHLYPIISMVLEYRQ-LTKLKSTYADGLANFIQDDQRIHG 608 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 + TGR S QN+P +R Sbjct: 609 KFNQ-TITATGRISSTEPNLQNIPIRMELGRA-------------------------IRK 642 Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 + +G + AD + IE RVLA ++ ++ + A+E +D++ T + F + +VT Sbjct: 643 VFLPEDGYVFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIHARTASEVFGIPMDEVTS 702 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 QR K + GL+ Sbjct: 703 TQRRDAKAVNF--------------GIIYGLS---------------------------- 720 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + + + + + RV E L E+ +G Sbjct: 721 --AFGLSQDLKISRKQAQEYIDRYFAMYPRVKEF---LDGEVEKGKTDGYVKTMFN---- 771 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 R ++ ++ R +Q + Sbjct: 772 -------------------RIRPIPELKSSNFMQRNF---GERVAMNSP------IQGTA 803 Query: 607 RDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAK 659 DI+ M+ + ++L +HDE++ ET + + + M + S Sbjct: 804 ADIIKIAMVRVNMKLKEKQMKSRLLLQIHDELLIETHLDEFEEVKEILQNEMMNAVS--L 861 Query: 660 GLPLKAEGYESKRY 673 +PL + + + Sbjct: 862 RVPLNIDIEQGASW 875 >gi|212702438|ref|ZP_03310566.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098] gi|212674099|gb|EEB34582.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098] Length = 919 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 109/694 (15%), Positives = 191/694 (27%), Gaps = 165/694 (23%) Query: 12 SPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL--WDCVHDPVM--------PQVLKEAL 61 S L D V L + D + + L L Sbjct: 357 SAPALDDVSALPDCGDARVALI-WAHGDREAPYLAVEGADGGSLGEWQWTGPVAELARWL 415 Query: 62 ENTDVTIVAHNSYFERT-------VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + A + + I V A Sbjct: 416 APARTLVTA-----DLKGLLTSAPCWQFLAG---RAADCIDLGVAAYLLNPEEN------ 461 Query: 115 ALKLSSQKMEEGKELIARF-CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 G L +GET + + + E+F+ Sbjct: 462 DYGWPRLSARWGAVLRHELESRGETASGPARLGLAMAQLFEQRMEK------DGLLELFR 515 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 RLE L + + G +D A V + +L + L + Sbjct: 516 RLE------MPLLPVLAGMEQSGVAIDAAAFRAFLDDVQGQLDQLTAHVYELAGTQ-FNI 568 Query: 234 RCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 R ++L LF GL T+ +T Q+ L P + R + + Sbjct: 569 RSAQQLGDVLFNGLGLPAPRKTKGGQASTSQQTLEKLAGQHPVVDSILQYR-KLEKMRST 627 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 L+ L ++ GR+ T A+ TGR S QN+P Sbjct: 628 YLDPLPRLVDPQGRIHTTFNQ-KATATGRLSSSNPNLQNIPVRGP--------------- 671 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + +RSC IA G+ LV AD + +E RVLA ++ + L+AF GED++ Sbjct: 672 ----------LGKRMRSCFIAGPGRLLVSADYSQVELRVLAHVSQDPALLEAFRNGEDIH 721 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T A +++ P QV+ DQR K + G+ Sbjct: 722 ARTAALVYDLPPDQVSPDQRRNAKTINF--------------GLIYGMG----------- 756 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + A E T + + ++ + E + + + Sbjct: 757 -------------------AQKLAQELKISTTQAKDFIARYFERLQGLKEFYEGVEASAR 797 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + + + GR + D+ + R+ Sbjct: 798 K--------------------------HGFVTTLGGRRRLLPDINSASGQAAALARRQ-- 829 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETPDTDEFN 643 ++Q + DI+ M+ + ++L VHDE++ E P Sbjct: 830 -------AINTVIQGSAADIIKLAMLAVARDERLRELDARLLLQVHDELLLEVPADAAEE 882 Query: 644 A-SMLYHLMTS--NPSWAKGLPLKAEGYESKRYR 674 A +++ LM +PL + + Sbjct: 883 AGALVARLMQDVCPAGKELSVPLLVDWGTGHDWG 916 >gi|169824040|ref|YP_001691651.1| DNA polymerase I [Finegoldia magna ATCC 29328] gi|167830845|dbj|BAG07761.1| DNA polymerase I [Finegoldia magna ATCC 29328] Length = 875 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 88/668 (13%), Positives = 200/668 (29%), Gaps = 153/668 (22%) Query: 35 FGFDDHPVEL------WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FN 85 + D+ PV + + + KE E+ D+ F+ + Sbjct: 328 YYVDNEPVIFAIYTDKVYITRNVELVESFKEEFESKDINK----LSFDIKPCIYHLMRYG 383 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG-ETHECLYD 144 +DI + + +++ ++ ++I K E Sbjct: 384 IDIS-YNYDDVVIIEYLLDPSKTSYSM----------ERSDPKVIGYDFKPLEDITGKGK 432 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ---------ELWYLDQTINDR 195 K + Y + T ++++++ + ++ L + + Sbjct: 433 SKKTILESDEKEIDNYVVKYMMFTNKLYEKISEIEEEDMMHLYRDVEIPLIKVLCDMEFT 492 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G CV + ++ + E +++ +E L + + ++L LF + L + Sbjct: 493 GVCVKKETLVEMGELFEDEIKSIEKSVEELIGKKI-NINSSKQLAEVLFEDLELPVIKKN 551 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T Q VL + + R ++ ++ +V+ + DG++ T Q Sbjct: 552 KTGPSTDQEVLEALSGRHEIIDYILRYR-TITKLKTTYIDGMVDLIKKDGKIHTTFQQTI 610 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 A +TGR S QN+P + +R + SE Sbjct: 611 A-QTGRISSTNPNLQNIPIRTEEGR-------------------------LIRKAFVPSE 644 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G L+ AD + IE RVLA +A ++ L AF+ G D++ T + F V +VT QR+ Sbjct: 645 GNMLLDADYSQIELRVLADLANDEVMLDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNA 704 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + G+ + + + Sbjct: 705 KAVNFGIV--------------YGIGDYSLSKDLHI------------------------ 726 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + + + + ++ ++ Sbjct: 727 ------TRKEAKEYIENYLDTYKGIKQYMEDIVAIGKE---------------------- 758 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 + R ++ + R +Q + DI+ Sbjct: 759 ----KGYVETIMNRRRYIPELKSKN---YNVRSFGERVA------LNTPIQGSAADIIKV 805 Query: 613 GMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKA 665 M+ K ++L VHDE++ + P + ++ +MT + + Sbjct: 806 AMVKFYNRLNEEKLKAKLILQVHDELIVDCPKDEREKVLEIMKDVMTHAVDLKVDMKIDV 865 Query: 666 EGYESKRY 673 + + Sbjct: 866 NS--ADNW 871 >gi|125974156|ref|YP_001038066.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405] gi|125714381|gb|ABN52873.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405] Length = 640 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 96/715 (13%), Positives = 193/715 (26%), Gaps = 153/715 (21%) Query: 5 FIDFETRSPIDL--TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--------VMP 54 DFET SP D A + +F + H + Sbjct: 23 AFDFET-SPRDKWRNDKSAALDAHKADITGISFSVSEGTAIYVPLKHRSGRNAENQAAIW 81 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK E+ DV VAHN FE L + + T+ ++ LK+ E Sbjct: 82 DYLKLLFESKDVIKVAHNLAFESMFL-YARGIVLQ-KPCYDTIAASQL-----TLKSKWE 134 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L+ ++ + + E R Y D T ++ Sbjct: 135 FRSLADSGLKTLAPALCKAEMTEFSTVTEGRFFDELNPQDEKTVRYACADSDYTLRLYHV 194 Query: 175 LEPLSSKEQELWYLDQT------------INDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + G VD + + + +E+ Sbjct: 195 FNQWFDRFLPKHRTIVEEVESPTSVYVGIMKYNGILVDKSAMLKKQAEAAEKIVSIRKEI 254 Query: 223 ESLTYGLVSSSR-CLEKLKTWLFLETGLHLEDLTETT-----------CQRVLSSNKKLT 270 + + + K +LF++ GL + T + ++N+ Sbjct: 255 AGIIGNVEIGANASTSAFKKYLFVDLGLPVMKTTAKHQEAADDETMILLKEWCATNRPEL 314 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 + ++ + + ++ + ++ D + TGR++ QN P Sbjct: 315 VRLFELVQEYRKWGKLKSTYIDGYLRFIDEDTGRIHPDLMPLGTETGRFASRNPNMQNCP 374 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 + VR +IA GK L+ D + IE RV A Sbjct: 375 QKDND-------------------------PIGVRKFIIAPAGKVLLSLDFSQIELRVGA 409 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-------VTKDQRAIGKVMELALGYQG 443 + ++ L+ + TG D++ T + + + + K++R I K + Y Sbjct: 410 FYCRDKRMLETYRTGGDIHAQTTSVIYRIPFEEAADKNAPHYKERRTIAKNCNFGVFYGL 469 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 Q+ C Sbjct: 470 FPTGLQRTLK--------------------------------------FKAGINPTLAEC 491 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 E + + + + +++ +E+ + + Sbjct: 492 ETIIQNLKSGYPGLAKWQDEVKKRA--AVSCYSETWL----------------------- 526 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----T 618 GR + ++ + + +Q + DIL Sbjct: 527 -GRRRYLLGIRSSDWGKKSFAER---------CALNTPIQGTAADILKLACGRIISGLPE 576 Query: 619 KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672 + +L +HDE+V E P+ + + M + P A +P+ AE + Sbjct: 577 RLWLKPMLQIHDELVFELPEDKVDEAVVFIKECMETQPFPAFDVPIVAEASVGRN 631 >gi|41407420|ref|NP_960256.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395772|gb|AAS03639.1| PolA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 919 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 102/673 (15%), Positives = 196/673 (29%), Gaps = 146/673 (21%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKAC 83 A D A D D + L L + H + L Sbjct: 364 AYDADCTALAIVSADGEGRYIDTSALDPDDEAALASWLADPGPPKALHEAK-----LAMH 418 Query: 84 FNLDIPIHRWI------CTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARF 133 D+ W T + A +L + L+ + ++ ++ Sbjct: 419 ---DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRYLRRELRAENPQQQQLSLL 475 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193 + + + A + D + R L + + + Sbjct: 476 DDTDGTDDQAVQTLILRAVAVLDLAD--ALDEELARINSTSLLSGME--LPVQRVLAGME 531 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 + G VD+ L L + + ++ + + ++L+ LF E + Sbjct: 532 NAGIAVDLDLLSELQSDFAHQIRDAAEAAYAVIGKQI-NLGSPKQLQAVLFDELQMPKTK 590 Query: 254 LTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 T+T T L S P + +R A+R V ++ L+ ++ SDGR+ T Sbjct: 591 RTKTGYTTDADALQSLFDKTGHPFLQHLLAHR-DATRLKVT-VDGLLNSVASDGRIHTTF 648 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 649 NQTIAA-TGRLSSTEPNLQNIPIRTEAGRR-------------------------IRDAF 682 Query: 369 IASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + +G +L+ AD + IE R++A ++ + ++AF TGEDL+ +R+F V +VT + Sbjct: 683 VVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGE 742 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K M L GL+ + +K Sbjct: 743 LRRRVKAMSYGL--------------AYGLSAYGLSQQLKI------------------- 769 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + A+ + V + + + + + Sbjct: 770 -----------STEEAKEQMDAYFARFGGVRDYLHAVVEQARK----------------- 801 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + GR ++ ++ R +Q + Sbjct: 802 ---------DGYTSTVLGRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAA 843 Query: 608 DILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKG 660 DI+ M+ KA I+L VHDE++ E + L M + Sbjct: 844 DIIKVAMIEVDKAIKEAGLRSRILLQVHDELLFEVAAGEREQLEALARDKMGGA--YPLD 901 Query: 661 LPLKAEGYESKRY 673 +PL+ + + Sbjct: 902 VPLEVSVGYGRSW 914 >gi|320334043|ref|YP_004170754.1| DNA polymerase I [Deinococcus maricopensis DSM 21211] gi|319755332|gb|ADV67089.1| DNA polymerase I [Deinococcus maricopensis DSM 21211] Length = 857 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 96/614 (15%), Positives = 179/614 (29%), Gaps = 151/614 (24%) Query: 72 NSYFERTVLKACFNL-DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 N+ L + + + L++A ++ L + ++ Sbjct: 379 NAK----ALATHLQVRGVSVEPGEDPLLIAYLLDNTVTNASLLAQAHLGAPWPDD--APT 432 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190 + L + + Y DV + L ++ Sbjct: 433 RALATAQLLTALRP------QLDEKRAQLY--KDVE----------------RPLAHVLA 468 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + RG +D A L+ + +LD ++ L S ++L++ L+ E GL Sbjct: 469 RMEVRGVRLDSAYLRGLSDSLGARAQELDARIQELAGHP-FSVNSRDQLESVLYDELGLA 527 Query: 251 LEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRL 304 T+ +T L + P + R ++ L+ L +N GRL Sbjct: 528 SGKKTKLTGKRSTAVSALEPLRDEHPIIPLLLEYR-ELTKLKGTYLDPLPNLVNPLTGRL 586 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 T A TGR S QN+P S + E + Sbjct: 587 HTTFAQ-TAVATGRLSSLNPNLQNIPIRSETGRE-------------------------I 620 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R IA +G L+ AD + IE R+LA +A + +AF G D++ T A+ V V Sbjct: 621 RKGFIADDGFCLISADYSQIELRLLAHIADDALMQEAFVGGADIHRRTAAQVLGVMEDLV 680 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T +QR K + G++ Sbjct: 681 TPNQRRAAKTVNF--------------GVLYGMS-------------------------- 700 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + R + + + R+ E + + Sbjct: 701 ----AHRLSNDLGISFAEASRFIERYFATYPRIREYIDATLAFGRE-------------- 742 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 + + GR + ++ + T R +Q Sbjct: 743 ------------HGYVETMYGRRRLVPELRSAN---RTMREAGERVAYNMP------IQG 781 Query: 605 VSRDILAEGMMNATK----AGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAK 659 + DI+ M+ + G ++L VHDE++ E P + L +M + Sbjct: 782 TAADIIKIAMVELDEQLSALGARLLLQVHDELLIEAPSDRADEVAALTRRVMEGVVT--L 839 Query: 660 GLPLKAEGYESKRY 673 +PL+ E + Sbjct: 840 KVPLRVEIGTGPNW 853 >gi|323173135|gb|EFZ58766.1| DNA-directed DNA polymerase [Escherichia coli LT-68] Length = 385 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 138/383 (36%), Positives = 203/383 (53%), Gaps = 10/383 (2%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 4 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 62 Query: 62 ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + + HNS+F+RTVL+ L P+ RW T+V A ++GLP +L + E L + Sbjct: 63 AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQ 122 Query: 121 QK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K +EGK LI FCK R H E WR F Y D+ RE++KRL Sbjct: 123 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 182 Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + + EL W+ DQ INDRG C+D+ LA + VD E+ +L + + +T G V ++ Sbjct: 183 WNYQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 242 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + L + G+ L D+ +T +R ++ L ++ R +AS ++ K L+ Sbjct: 243 RDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRQQASTTSTSKYKALM 301 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353 + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L Sbjct: 302 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLF 361 Query: 354 PDPLQIISDCVRSCVIASEGKKL 376 + +++ S +R C+IA GK Sbjct: 362 DNIMELTSSALRGCIIAPTGKNW 384 >gi|183982446|ref|YP_001850737.1| DNA polymerase I PolA [Mycobacterium marinum M] gi|183175772|gb|ACC40882.1| DNA polymerase I PolA [Mycobacterium marinum M] Length = 899 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 98/655 (14%), Positives = 190/655 (29%), Gaps = 139/655 (21%) Query: 39 DHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97 D D P L E L + H + L + T Sbjct: 359 DGEGGYIDTATLTPDDDAALGEWLADPAKPKALHEAKLAIHDL-RGRGWTLN-GVTSDTA 416 Query: 98 VLARSNGLPS---ALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 + A L + +L ++ E+ + + + + Sbjct: 417 LAAYLVRPGQRSFTLDDLSLRYLRRELRAETPEQQQLSLLDDDDTDVAAAQTAILRARAV 476 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 + + T + E + ++ + G VD+ + L Sbjct: 477 IDLADALDAELDRIDSTGLLA-------DMELPVQHVLAEMETAGIAVDLTMLGGLQSHF 529 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKK 268 + + ++ + + ++L+ LF E G+ T+T T L S Sbjct: 530 ADQIRDAAEAAYAVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFD 588 Query: 269 L--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 P + +R +R V ++ L+ ++ DGR+ T A+ TGR S Sbjct: 589 KTGHPFLQHLLAHR-DVTRLKVT-VDGLLNSVADDGRIHTTFNQTIAA-TGRLSSTEPNL 645 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIE 385 QN+P + + +R + +G +L+ AD + IE Sbjct: 646 QNIPIRTDAGR-------------------------QIRDAFVVGDGYSELMTADYSQIE 680 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R++A ++ ++ ++AF TGEDL+ +R+F V +VT + R K M L Sbjct: 681 MRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL------ 734 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 GL+ + + + Sbjct: 735 --------AYGLS------------------------------AYGLSSQLKISTEDAKV 756 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + + V + L EQ ++G G Sbjct: 757 QMDQYFSRFGGVRDY---LMAVVEQARKDGYTSTVL-----------------------G 790 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620 R ++ ++ R +Q + DI+ M+ KA Sbjct: 791 RRRYLPELDSSN---RQVREAAERAALNAP------IQGSAADIIKVAMIEVDKALKEHA 841 Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + L M S + +PL+ + + Sbjct: 842 LKSRMLLQVHDELLFEVAAGEREQIEALVRDKMGSA--YPLDVPLEVSVGFGRSW 894 >gi|297626697|ref|YP_003688460.1| DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922462|emb|CBL57035.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 892 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 103/690 (14%), Positives = 191/690 (27%), Gaps = 153/690 (22%) Query: 11 RSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTI 68 RS + + A + AF D + L L + T Sbjct: 324 RSDDPIGVEATGHWGAGTGDIDTLAFATTSDDAACVDVPELTPDDEKALAAWLTDPQATK 383 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGL---PSALKAVGEALKLSSQKME 124 H + L A + + + T + A L + Sbjct: 384 AMHGAK---GPLLALWARQLDLAGLDSDTQLAAYLLRPDQRSYDLDDLALRH-------- 432 Query: 125 EGKELIARFCKGETHECLYDRNKPNHRE--AWRLFGEYCKGDVTVTR----EIFKRLEPL 178 G+EL + + E + E + + E+ + Sbjct: 433 LGREL-----RVQDSEQVNQETLDFGSERQPAETAMLRARAIAELAGVLDGELDDTSQRG 487 Query: 179 SSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E+ + + RG +D+ + L D +Q + + + Sbjct: 488 LLHSLEMPLERVLARMEQRGVAIDMDVLDQLRSEYDARVQAAEQAAFAAIGTQI-NLGSP 546 Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKL 291 ++L+ LF + + T++ T L + P + R + + Sbjct: 547 KQLQAVLFDQLDMPKTKRTKSGYTTDADALEKLYQKTRHPFLEHLLAYRDTIKLRQI--I 604 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 +TL+++ + DGR+ T A TGR S QN+P + Sbjct: 605 DTLIKSTSDDGRIHTTYVQTVAG-TGRLSSTDPNLQNIPIRTPEGRR------------- 650 Query: 352 SDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R + EG + L+ AD + IE RV+A +G++ + AF +G D + Sbjct: 651 ------------IRDAFVPGEGFEGLMSADYSQIEMRVMAAASGDKTLIHAFASGADFHS 698 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + F+V QVT QR+ K M L Y A GL+ Sbjct: 699 MTASHVFDVPVEQVTPAQRSSVKQMNYGLAYGLSA---------YGLS------------ 737 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + + Q V + + L E+ Sbjct: 738 -----------------------SRLNVSVPEARALMDQYFQTFGPVRDYLDSL---VEK 771 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + G GR D+ ++ + R Sbjct: 772 ARKQGYTETML-----------------------GRRRYLPDLNSSN---RQRRQMAERM 805 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ M+ + ++L +HDE+V E + Sbjct: 806 ALNAP------MQGTAADIIKTAMLQVEQELSASGLRSRMLLQIHDELVLEVAAGERDRV 859 Query: 645 SMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + M +PL + + Sbjct: 860 QQIVGDKMKHAIE--LTVPLDVSFGYGRSW 887 >gi|330685710|gb|EGG97349.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU121] Length = 466 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 77/535 (14%), Positives = 154/535 (28%), Gaps = 132/535 (24%) Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 E + EY + + E+ L + + + G DV + + Sbjct: 49 KAEMQKQLKEYNQESLLADLEL------------PLAEILSEMEEIGIFTDVKDLQQMEK 96 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266 + + L + + + ++L LF L + T+ +T VL Sbjct: 97 EIQEKLDVLIKNIHEAAG-EEFNINSPKQLGVVLFETLELPVIKKTKTGYSTAVDVLEQL 155 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + P + R S+ + L + ++ D R+ A +TGR S Sbjct: 156 QGQHPIIDYILEYRQ-LSKLQSTYVEGLQKVISDDHRIHTRFNQTLA-QTGRLSSVDPNL 213 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIE 385 QN+P + +R S ++ AD + IE Sbjct: 214 QNIPIRLEEGRK-------------------------IRKAFKPTSSDSVILSADYSQIE 248 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RVLA + ++ +AF G D++ T + F+V +V R K + + Y Sbjct: 249 LRVLAHITQDESMKEAFINGHDIHTATAMKVFDVEADEVDSLMRRQAKAVNFGIVYGIS- 307 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + L + + + + + + + ++ + Sbjct: 308 ----DYGLSQSLGITRKKAKAFIDDYLDSFPGVKQYMSDIVKDAKAQGFVETL------- 356 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 +RR +P + + Sbjct: 357 ----------------------------------LHRRRYIPDITSRNFNLRSF------ 376 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620 R+ +NT +Q + DI+ M+ K Sbjct: 377 ---------AERTAMNTP------------------IQGSAADIIKLAMVQFNKEVQHTD 409 Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P + + S + +M S +PLK + + Sbjct: 410 YHAKLLLQVHDELIFEVPKDEVASFSKFVEEIMESALK--LDVPLKVDSSYGATW 462 >gi|190571485|ref|YP_001975843.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018887|ref|ZP_03334695.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357757|emb|CAQ55209.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995838|gb|EEB56478.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 842 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 89/665 (13%), Positives = 191/665 (28%), Gaps = 147/665 (22%) Query: 18 KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER 77 K I + E+ + + + + D ++ L + V + H+ R Sbjct: 315 KIAIHCHFENNRLNKISLSCSEDNIFYIDQSCLQDALTIINSTLFSNGVLKIVHDI---R 371 Query: 78 TVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGE 137 + + ++ + ++++ S + + + + F Sbjct: 372 KIREIFPTIERVLDSIDDLMIMSYSLD-TGKHD-----HSIPNIIAHNLSKNVETFSAKI 425 Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197 + +E F Y + D + L + + G Sbjct: 426 LIAIHEKLTQRLFQEKL--FTIYERFD------------------RPLMKVIFDMEQNGI 465 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257 +++ L+ + L+ ++ +L + ++L LF + L + +++ Sbjct: 466 LLNIQKLQELSDKFEQLIAVLENDIHNLAG-EKFNIASPKQLSDVLFNKMELSKKKKSKS 524 Query: 258 ----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLG 312 T VL + ++ + N S+ + L++ ++ DGR+ + Sbjct: 525 GSYSTNYEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPIDGRIHTSFS-TT 583 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P S +R IA + Sbjct: 584 VTATGRLSSSNPNLQNIPIRSEEGN-------------------------FIRQAFIAPK 618 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G K++ AD + IE ++LA +A +AF +D++ T + F V ++ + R Sbjct: 619 GCKIISADYSQIELKLLAHVANVTAFKEAFANRQDIHDITARQVFGV--QEIDEQLRRKA 676 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ A Sbjct: 677 KTIN--------------FGIIYGISPFGLAKR--------------------------- 695 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + +A +G Sbjct: 696 ---LGITFQEAAEYINYYFSCYPEIKVYM---EKAVSIARNHGYVETL------------ 737 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 GR RD+ N YL R Q + DI+ Sbjct: 738 -----------FGRRCFVRDINNKIPYLRQF---AERAAINAPL------QGTAADIIKR 777 Query: 613 GMMNA-TKAGY-DIVLTVHDEIVCETPDTDE-FNASMLYHLMTSNPSWAKGLPLKAEGYE 669 M+ + I+L VHDE++ E ++ A ++ +M + +PL+ E Sbjct: 778 AMIRLFDQLKSGKIILQVHDELLVEVEESRVQETAKLMKDIMENAVE--ISIPLEVEIKI 835 Query: 670 SKRYR 674 S + Sbjct: 836 SDNWG 840 >gi|295092015|emb|CBK78122.1| DNA polymerase I [Clostridium cf. saccharolyticum K10] Length = 986 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 83/519 (15%), Positives = 153/519 (29%), Gaps = 121/519 (23%) Query: 167 VTREIFKRLEPLSSKEQELWYL--DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 +T+++ + E+ + + G CV H + + V+ +L+QE+ Sbjct: 573 LTKKLEELDMKELFYTIEMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEIYG 632 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 T + ++L LF + L T+ +T VL P ++ + R Sbjct: 633 ETG-EHFNINSPKQLGEILFGKMELPYGKKTKTGYSTAADVLEKLAPEYPVVQKILDYRQ 691 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ + L + DGR+ GT + TGR S QN+P E Sbjct: 692 -LTKLKSTYADGLAGYIREDGRIHGTFNQ-TITATGRLSSTEPNLQNIPVRMELGRE--- 746 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R + EG V AD + IE RVLA M+G++ ++A Sbjct: 747 ----------------------IRRVFVPEEGSVFVDADYSQIELRVLAHMSGDERLIEA 784 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 + ED++ T + F+V +VT QR K + G++ Sbjct: 785 YRKAEDIHAITASEVFHVPLEEVTPLQRRNAKAVNF--------------GIVYGIS--- 827 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + + + + V + Sbjct: 828 ---------------------------AFGLSEDLSITRKEALEYINRYFETYPDVKKF- 859 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 L + E+ E G K R ++ + Sbjct: 860 --LDRLVEEGKEKGYVTTMFK-----------------------RRRPVPELSSKNFMQR 894 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635 + R +Q + DI+ M IVL VHDE++ E Sbjct: 895 SF---GERVAMNSP------IQGTAADIIKIAMNRVDNRLRREGLKSKIVLQVHDELLIE 945 Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + L+ + + Sbjct: 946 AKKEELKRVQTILSEEMKHAAD--LRVALEIDMKTGNSW 982 >gi|308177719|ref|YP_003917125.1| DNA polymerase I [Arthrobacter arilaitensis Re117] gi|307745182|emb|CBT76154.1| DNA polymerase I [Arthrobacter arilaitensis Re117] Length = 870 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 94/666 (14%), Positives = 185/666 (27%), Gaps = 142/666 (21%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFN 85 D + A F D + L + L + + H++ +L + Sbjct: 323 DGQAVGLAL-FRGAQAAWLDLSGLDEAAENVLAQFLADAAAPKIFHDAKATMHLLA---D 378 Query: 86 LDIPIHRWIC-TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + + TL+ A + L + + D Sbjct: 379 RGLKLAGIHDDTLISAYLIQPDRRSHDL---------VDVVQYHLKYAVPVHQAKKGELD 429 Query: 145 RNKPNHREAWRLFGEYCKGD--VTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVD 200 L D + ++ ++ E L + + G VD Sbjct: 430 LGLTADLAEPALAQAQAIHDLSAFLATKLAEKHADKLAAEMELPLIPVLFEMERAGVAVD 489 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--- 257 V + L + + + + V + ++L+ LF E L +T Sbjct: 490 VDRLNELRAHFTEQVDQATNDAFAAIGHEV-NLSSPKQLQVVLFEELDLPRTKKIKTGFT 548 Query: 258 TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 T L+ K P + + R ++ L++A + DGR+ T A+ Sbjct: 549 TDAESLADLLVKTGHPFLVALMAYRDAIKLRQT--VDGLLKATHEDGRIHTTYAQTVAA- 605 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P S +R + EG + Sbjct: 606 TGRLSSLNPNLQNIPVRSEEGRR-------------------------IRDVFMVGEGYQ 640 Query: 376 -LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 L+ D + IE R++A ++ ++ ++A++ GEDL+ +R FNV P +VT + R+ K Sbjct: 641 SLLTVDYSQIEMRIMAHLSEDEGLIEAYQNGEDLHRYVGSRVFNVEPEEVTSEMRSKVKA 700 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 M L Y + L Sbjct: 701 MSYGLAYG-----LSSFGLSKQL------------------------------------- 718 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 ++ K + + V + + Sbjct: 719 --KIGVDEARKLMKDYFDRFGAVRTYLRSVVDQARK------------------------ 752 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 + GR ++ ++ R +Q + D++ M Sbjct: 753 --DGYTETIFGRRRYLPELNSSD---RRLRDIAERAALNAP------IQGSAADLVKVAM 801 Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667 + + ++L VHDE++ E + + L M +PL + Sbjct: 802 LRIDEELKAGEYKSRMLLQVHDELILEIAEGELEPVQELVTREMGQAAELL--VPLDVQP 859 Query: 668 YESKRY 673 + + Sbjct: 860 GVGRTW 865 >gi|222153812|ref|YP_002562989.1| DNA polymerase I [Streptococcus uberis 0140J] gi|222114625|emb|CAR43640.1| DNA polymerase I [Streptococcus uberis 0140J] Length = 881 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 98/661 (14%), Positives = 187/661 (28%), Gaps = 147/661 (22%) Query: 35 FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFNLDIPIH 91 F + + P+VLK + + + ++ +L + N+D+P Sbjct: 342 FAWGNTENIYVS-----QNPEVLKTDVFQAFLRKPM--ATYDFKRAKILLSHLNIDVPRG 394 Query: 92 RWICTLVLARSNGL--PSALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRN 146 + + L + L S + GK + F + Sbjct: 395 A-FDARLANYLLSNVDDNQLSTIARVHTNIHLESDDVVYGKGVKRAFPDKGLLFAHLAKK 453 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 E+ + +L E L + + G V+ Sbjct: 454 IKVLVESKATMLDK--------LSDHDQLALFEDIEMPLANVLAKMEITGIKVNKETLVE 505 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE---TTCQR 261 + + V +L QE+ L + ++L + LF + L + T+ +T Sbjct: 506 MAEQNKVIIDRLTQEIYDLAG-EEFNINSPKQLGSILFEKMQLPIEMTKKTKTGYSTAVD 564 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + P ++ + R ++ L L + + DG++ ++TGR S Sbjct: 565 VLERLAPIAPVVAKILDYRQ-ITKLQSTYLIGLQDYIMEDGKIHTRYVQD-LTQTGRLSS 622 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVAD 380 QN+P +R AS E L+ +D Sbjct: 623 IDPNLQNIPIRMEQGR-------------------------LIRKAFTASSEDALLLSSD 657 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV-TKDQRAIGKVMELAL 439 + IE RVLA ++G+Q + AF D++ +T R F + + T + R K + + Sbjct: 658 YSQIELRVLAHISGDQHLITAFNEDADIHTSTAMRVFAIDKEEDVTANDRRNAKAVNFGI 717 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y + L Sbjct: 718 VY-----GISDFGLSNNL---------------------------------------GIS 733 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + ++ + + + + + + Sbjct: 734 RQKAKEYINTYFDRYPGIKDYMDSIVREAKD--------------------------KGY 767 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + R D+ + R +Q + DIL M+N K Sbjct: 768 VETLFKRRRELPDINSRNF---NVRSFAERTAINSP------IQGSAADILKIAMINLDK 818 Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672 A ++L VHDEIV E P + L M +PL+A+ K Sbjct: 819 ALEEGRFKTKMLLQVHDEIVLEVPKDELEKVKQLVKETMEHAVD--LSVPLRADENSGKS 876 Query: 673 Y 673 + Sbjct: 877 W 877 >gi|284991623|ref|YP_003410177.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160] gi|284064868|gb|ADB75806.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160] Length = 912 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 96/667 (14%), Positives = 187/667 (28%), Gaps = 136/667 (20%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLK-ACF 84 + A D D L + L + D V H +L Sbjct: 356 GELTGIALAGGDDHATFVDLGPGLDAVDEQALADWLADPDAQKVVHEVK--GPLLAVWAR 413 Query: 85 NLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 D+ T + A L + K +E E Sbjct: 414 GWDLA-GVVSDTALAAYLALPGQRSFDLADLAVRYLRRELKDSAAEETQLTLDGMGPSEE 472 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCV 199 R + + + + +R E L ++ + RG Sbjct: 473 DLAREAAHADVLKAVAVNDLSDALDSL--LGQRGGDALLGGIELPLTFVLARMEQRGIAA 530 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-- 257 D+ H L + E ++ V + ++L+ LF E GL ++ Sbjct: 531 DLDFLHELQREFADGVAAAAAEAYAVIGREV-NLGSPKQLQAVLFDELGLPKTKKIKSGY 589 Query: 258 -TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 T L++ P + +R +R ++ L+ ++ GR+ T Q A+ Sbjct: 590 TTDAEALTNLLAQTGHPFLEHLLRHR-DVTRLR-TVIDGLIPMVDDGGRIHTTFQQTIAA 647 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374 TGR S QN+P + +R + G Sbjct: 648 -TGRLSSIDPNLQNIPIRTAEGRR-------------------------IRQAFVVGSGH 681 Query: 375 K-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 + L+ AD + IE R++A ++G+ ++AF +GEDL+ +R++++ V + R K Sbjct: 682 ESLMTADYSQIEMRIMAHLSGDAGLIEAFTSGEDLHSFVASRAYDIPIEDVDPEMRRRIK 741 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 M L Y L ++ + ++ E + + + ++ + Sbjct: 742 AMSYGLAYG-----LSAYGLAGQLRISVEEAREQMHAYFERFGGIREYLDGVVDDARQTG 796 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 +RR +P + Sbjct: 797 YT-----------------------------------------ETTLGRRRYLPDLTSD- 814 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 +G+ + R +Q + D++ Sbjct: 815 ----------NGQRRQMAE----------------RMALNAP------IQGSAADVIKVA 842 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 M+ +A ++L VHDE+V E + L M +PL+ Sbjct: 843 MLRVEQAIADEGLRSRMLLQVHDELVLEVAPGEREALETLVRREMAGAAQ--LSVPLEVS 900 Query: 667 GYESKRY 673 + + Sbjct: 901 VGFGRTW 907 >gi|168701979|ref|ZP_02734256.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246] Length = 824 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 83/475 (17%), Positives = 140/475 (29%), Gaps = 89/475 (18%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV--------HDPVMPQVL 57 D ET D ++ ++F + + + L Sbjct: 407 FDLETAGLDP---------VHDP-IVGYSFSWQKGTAYYLPVRAPAGEPVLNPDTVLAAL 456 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 K EN + HN F+ VL +++ ++V L + Sbjct: 457 KPVFENPAIEKRNHNIKFDLIVLA-ASGVELAGVA-GDSMVAHYLLDPGARAHGLDDLT- 513 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG----------- 163 L KELI + +Y Sbjct: 514 -LDELRHTNISIKELI----------GTGKKQITMAEVPVARVRDYACEDADAALQLAAA 562 Query: 164 -----DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 D RE++ LE + + G VDV L + E Sbjct: 563 FEPRLDAAGLRELYDTLEVPL------IRVLAEMEHVGIRVDVPFLVQLGVQMGEELAGY 616 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT-----ETTCQRVLSSNKKLTPQA 273 + ++ +L + L++L+ LF E L ++ T +T Q L L + Sbjct: 617 EGDIHALAGRA-FNIGSLKELQKILFDELKLPVQKRTGIKNEPSTDQESLERLAALGHEL 675 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + + S+ ++ L + +GR+ + A TGR S QN+P + Sbjct: 676 PKKLLAYRKVSKLKSTYVDVLPALADKNGRVHTSFNQASAE-TGRLSSSEPNLQNVPTRT 734 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R I +G LV AD + IE R+L Sbjct: 735 EQG-------------------------AQLRKAFIPRDGWVLVTADYSQIELRLLTHFC 769 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 G+ AF D++ A+ F V +VTK QR + K + + Y A Sbjct: 770 GDDTLRAAFAEDRDVHTAVAAQIFKVPEGEVTKAQRGVAKTVNFGVLYGMSATGL 824 >gi|220904332|ref|YP_002479644.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868631|gb|ACL48966.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 921 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 94/577 (16%), Positives = 168/577 (29%), Gaps = 130/577 (22%) Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + L + L + + + D Sbjct: 459 GLAAYLVNPEESDYAWPRLAVHWGAPLRDDGPGPALLALRMVEVLEAR--MRQDGLAEL- 515 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 S E L + + RG +D A + V L + Sbjct: 516 -------YESLELPLTPILADMERRGIAIDAAAFESFLSDVQGRLDTLTAAVYEAAG-RE 567 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + R ++L LF L T+ +T Q L P V R + + Sbjct: 568 FNIRSAQQLGDVLFSTLELPSPRKTKGGQASTSQDTLEKLAGRHPVVDSVLEFR-KLEKM 626 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 L+ L M+ +GR+ T A+ TGR S QN+P Sbjct: 627 RSTYLDPLPRLMDGNGRIHTTFNQ-KATATGRLSSSNPNLQNIPVRG------------- 672 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 + +R+C IA+ G LV AD + +E RVLA M+ ++ L+AF GE Sbjct: 673 ------------DLGKRMRTCFIANPGSALVSADYSQVELRVLAHMSQDKALLEAFRNGE 720 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T A +++AP QV+ DQR K + G+ Sbjct: 721 DIHARTAALVYDLAPDQVSPDQRRNAKTINF--------------GLIYGMG-------- 758 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + + + + + + + + E ++ + Sbjct: 759 ----------------------AQKLGQDLKISTSEAKEFIARYFSRLTGLKEFYDSVEA 796 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 + G GR + D+ + Sbjct: 797 TAK---RQGYVTTLG-----------------------GRRRLLPDIHSPN---GQAYAL 827 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETPDTD 640 R+ ++Q + DI+ M+ + ++L VHDE++ E P+ Sbjct: 828 ARRQAI------NTVIQGSAADIIKLAMLAVAEDEQLREHEARLLLQVHDELLLEVPEAS 881 Query: 641 EFNA-SMLYHLMTSNPSWA--KGLPLKAEGYESKRYR 674 A + + LM+S +PL + K + Sbjct: 882 ARAAGARVADLMSSVKPGGEPLSVPLVVDWGVGKNWG 918 >gi|307706914|ref|ZP_07643715.1| DNA polymerase I [Streptococcus mitis SK321] gi|307617706|gb|EFN96872.1| DNA polymerase I [Streptococcus mitis SK321] Length = 877 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 101/669 (15%), Positives = 198/669 (29%), Gaps = 152/669 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKAC 83 ++ FA+ + D + Q K+ LE T + + ++ VL Sbjct: 333 DLVGFAWSYGDK----LYATDKLELLQEPIFKDFLEKTPLRV------YDFKKAKVLLNH 382 Query: 84 FNLDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138 F +D+ + + + + ++ L + GK + + E Sbjct: 383 FGVDLQ-APAFDSRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIPEREK 441 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198 R E + E + + ++ EQ L ++ + G Sbjct: 442 FLEHLARKLAVLIETEPILLEKLSENGQLEL-LY-------DMEQPLAFVLAKMEIAGIT 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNINSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + G++ ++ Sbjct: 706 AKAVNFGVV--------------YGISDFGLSN--------------------------- 724 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 725 ---NLGISRKEAKTYIDTYFERFPGIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELTEMKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|168211075|ref|ZP_02636700.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC 3626] gi|170710890|gb|EDT23072.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC 3626] Length = 642 Score = 280 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 102/721 (14%), Positives = 185/721 (25%), Gaps = 155/721 (21%) Query: 2 ATLFIDFETRSPID---LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------- 51 + D E + L + ++ + + H Sbjct: 23 KVVAFDIECAPKNEWFRLNEKKAALDPNKGHIVGISLSVKEGTGIYIPLRHRNGKNVEDV 82 Query: 52 -VMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109 M LK N + VAHN FE + L + I T+ G Sbjct: 83 HRMIAWLKGFVFHNESLIKVAHNISFESSFLCEY-GIVIK-EPVFDTM-----LGSMLTF 135 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 K+ GE L ++ + I + + N + Y D Sbjct: 136 KSFGEFRTLRDSGLKLLAKEIFNEDLPSFSHVVNGTHFDNLHSEHKETVRYACADSDYAL 195 Query: 170 EIFKRLEPLSSKEQELWYLDQT------------INDRGYCVDVALAHTLNQIVDVERTK 217 ++ L + G ++ L N+ + E Sbjct: 196 RLYNWCMEWFETYIPEHRLVCERVESPAAVYTGIMKKNGITLNKELLQEFNRRAEEELEF 255 Query: 218 LDQELESLTYGLVSSSR--CLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKK--- 268 +E+ S V+ + K +LF + L + E + L ++ Sbjct: 256 CKREILSFANREVNLGSNLQTQDFKDFLFKDLRLPVLKICEKGDPSLDDESLILLEEWCI 315 Query: 269 ----LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 I+ R S+ + L + +N + T F + TGR+S Sbjct: 316 RNFKKGTYLIECIKRHKRVSKLKSTYIEALGKLLNCETGKIHTDFFSMGAETGRFSSRNP 375 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QNLPR H +R I S + D + I Sbjct: 376 NLQNLPRKDNDHLG-------------------------IRKLFIPSPNHVFLDFDFSQI 410 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT-------KDQRAIGKVMEL 437 E RV A+ ++ + AF D++ T + +N+ + T K +R I K Sbjct: 411 ELRVGAYYCKDRKMINAFMKDFDIHGITTSIIYNIPLEEATDRNHEDFKKRRTIAKNCNF 470 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + + K QK G Sbjct: 471 GVFFGLFPKGLQKTLMYKG--------------------------------------GIN 492 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 CER+ + + + R+S + + Sbjct: 493 ISEKDCERIIRNIKDGYPRLSTWQKDTVKVA--------------------------AYR 526 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 +GR +D+ + + +Q + DI+ M Sbjct: 527 GYTRSRTGRRRYLKDMKSKD---------WNKRAVSERCALNTPIQGTAADIIKIAMARI 577 Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSNPSWAKGLPLKAEGYESK 671 + +L +HDE++ E + + M P +P+K E Sbjct: 578 LRELPERGYIKPLLQIHDELLFEVREDKVNEAIVFIKDCMERTPFKDFNIPIKVEYSVGY 637 Query: 672 R 672 Sbjct: 638 N 638 >gi|296164498|ref|ZP_06847069.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900098|gb|EFG79533.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 906 Score = 280 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 102/682 (14%), Positives = 194/682 (28%), Gaps = 164/682 (24%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKAC 83 A D A D D + L L + H + L Sbjct: 351 AYDADATALAIVSADGEGRYIDTSALQPDDEAALASWLADPGPPKALHEAK-----LAMH 405 Query: 84 FNLDIPIHRWI------CTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFC 134 D+ W T + A +L+ + + R Sbjct: 406 ---DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLEDLSLRY-------------LRREL 449 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQE 184 + ET E ++ + ++ L+ + E Sbjct: 450 RAETAEQQQLSLLDDNDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLGGMELP 509 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 + + + G VD+ L L + + ++ + + ++L+T LF Sbjct: 510 VQRVLAGMEHTGIAVDLELLGELQSDFAHQIRDAAEAAYAVIGKQI-NLGSPKQLQTVLF 568 Query: 245 LETGLHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 E + T+T T L S P + +R +R V ++ L+ ++ Sbjct: 569 DELEMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLTHR-DVTRLKVT-VDGLLASVA 626 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 SDGR+ T A+ TGR S QN+P + + Sbjct: 627 SDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEAGRR--------------------- 664 Query: 360 ISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R + +G +L+ AD + IE R++A ++ ++ ++AF TGEDL+ +R+F Sbjct: 665 ----IRDAFVVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFG 720 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 V +VT + R K M L GL+ + +K Sbjct: 721 VPIGEVTAELRRRVKAMSYGL--------------AYGLSAYGLSQQLKI---------- 756 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 + A+ + V + + + Sbjct: 757 --------------------STEEAKEQMDAYFARFGGVRDYLMNIVDQARK-------- 788 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 + GR ++ ++ R Sbjct: 789 ------------------DGYTSTVLGRRRYLPELDSSN---RQVREAAERAALNAP--- 824 Query: 599 ENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-M 651 +Q + DI+ M+ KA ++L VHDE++ E + L M Sbjct: 825 ---IQGSAADIIKVAMIEVDKAIKEAGLKSRMLLQVHDELLFEVAPGERERLEALAREKM 881 Query: 652 TSNPSWAKGLPLKAEGYESKRY 673 + +PL+ + + Sbjct: 882 GGA--YPLDVPLEVSVGYGRSW 901 >gi|302381103|ref|ZP_07269563.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3] gi|302311150|gb|EFK93171.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3] Length = 875 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 87/668 (13%), Positives = 199/668 (29%), Gaps = 153/668 (22%) Query: 35 FGFDDHPVEL------WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FN 85 + D+ PV + + + KE E+ D+ F+ + Sbjct: 328 YYVDNEPVIFAIYTDKVYITRNVDLVESFKEEFESKDINK----LSFDIKPCIYHLMRYG 383 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG-ETHECLYD 144 +DI + + +++ ++ ++I K E Sbjct: 384 IDIS-YNYDDVVIIEYLLDPSKTSYSM----------ERSDPKVIGYDFKPLEDITGKGK 432 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ---------ELWYLDQTINDR 195 K + Y + T ++++++ + ++ L + + Sbjct: 433 SKKTILESDEKEIDNYVVKYMMFTNKLYEKISEIEEEDMMHLYRDVEIPLIKVLCDMEFT 492 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G CV + ++ + E ++ +E L + + ++L LF + L + Sbjct: 493 GVCVKKETLVEMGELFEDEIKSIEDSVEELIGKKI-NINSSKQLAEVLFEDLELPVIKKN 551 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T Q VL + + R ++ ++ +V+ + DG++ T Q Sbjct: 552 KTGPSTDQEVLEALSGRHEIIDYILRYR-TITKLKTTYIDGMVDLIKEDGKIHTTFQQTI 610 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 A +TGR S QN+P + +R + SE Sbjct: 611 A-QTGRISSTNPNLQNIPIRTEEGR-------------------------LIRKAFVPSE 644 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G L+ AD + IE RVLA +A ++ + AF+ G D++ T + F V +VT QR+ Sbjct: 645 GNMLLDADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNA 704 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + G+ + + + Sbjct: 705 KAVNFGIV--------------YGIGDYSLSKDLHI------------------------ 726 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + + + + ++ ++ Sbjct: 727 ------TRKEAKEYIENYLDTYKGIKQYMEDIVAIGKE---------------------- 758 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 + R ++ + R +Q + DI+ Sbjct: 759 ----KGYVETIMNRRRYIPELKSKN---YNVRSFGERVA------LNTPIQGSAADIIKV 805 Query: 613 GMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKA 665 M+ K ++L VHDE++ + P + ++ +MT + + Sbjct: 806 AMVKFYNRLNEEKLKAKLILQVHDELIVDCPKDEREKVLEIMKDVMTHAVDLKVDMKIDV 865 Query: 666 EGYESKRY 673 + + Sbjct: 866 NS--ADNW 871 >gi|145295490|ref|YP_001138311.1| DNA polymerase I [Corynebacterium glutamicum R] gi|140845410|dbj|BAF54409.1| hypothetical protein [Corynebacterium glutamicum R] Length = 880 Score = 280 bits (716), Expect = 6e-73, Method: Composition-based stats. Identities = 93/673 (13%), Positives = 194/673 (28%), Gaps = 144/673 (21%) Query: 17 TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYF 75 G YA A H L D + L L + + + H + Sbjct: 331 KPAGGDAYA-------LAIADTKHHAVLVDLADISAEDEKALATWLASEN-PKMLHGAKA 382 Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135 +L ++ T + A + + + L + Sbjct: 383 AYHMLA-GRGFELH-GVVHDTAIAAYLLRPGQRTYELADVY---------QRHLQRQLST 431 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTIN 193 + L + + + + +T+++ + + E+ + + Sbjct: 432 NDNGGQLALLDAADDQSLVDDVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARME 491 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G VDVA + + + ++ L + ++L+ LF G+ Sbjct: 492 AIGIAVDVATLEEQLKTFIGQVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTK 551 Query: 254 LTE---TTCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 T+ +T + + K P + +R + L L+ + DGR+ T Sbjct: 552 KTKTGYSTAAAEIEALAIKNPHPFLDHLLAHRQY-QKMKTT-LEGLIREVAPDGRIHTTF 609 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A TGR S QN+P + + + +RS Sbjct: 610 NQTVA-STGRLSSTDPNLQNIPVRTEAGRK-------------------------IRSGF 643 Query: 369 IASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + EG L+ AD + IE RV+A ++ + ++A+ GEDL+ ++ FNV VT + Sbjct: 644 VVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPE 703 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K M L GL+ + + + Sbjct: 704 LRRQVKAMSYGLV--------------YGLSAFGLSQQLSIPAG---------------- 733 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 +++ +++ ++ V E+ + + Sbjct: 734 --------------EAKQIMESYFERFGGVQRYLREIVEEARKA---------------- 763 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 GR ++ ++ R +Q + Sbjct: 764 ----------GYTETLFGRRRYLPELTSDN---RVARENAERAALNAP------IQGTAA 804 Query: 608 DILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKG 660 DI+ M+ ++ ++L VHDE+V E + + M + Sbjct: 805 DIIKVAMIRVDRSLKEAAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNAIK--LS 862 Query: 661 LPLKAEGYESKRY 673 +PL+ + + Sbjct: 863 VPLEVSAGDGVNW 875 >gi|291543473|emb|CBL16582.1| DNA polymerase I [Ruminococcus sp. 18P13] Length = 851 Score = 280 bits (716), Expect = 6e-73, Method: Composition-based stats. Identities = 86/510 (16%), Positives = 164/510 (32%), Gaps = 123/510 (24%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E L + ++ G VD + E +L++E+ +L + + Sbjct: 446 MEEIELPLVEVLASMEHTGVLVDQDGVRRFGDALSGEIRQLEEEIYTLAG-KQFNIASPK 504 Query: 238 KLKTWLFLETGLHLE---DLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 +L LF + + T+ +T VL + P + R ++ Sbjct: 505 QLGQVLFEDLEIPHPQGKKKTKTGSFSTNAEVLEKLRGAYPIVSLILRYRQ-LTKLNSTY 563 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L++ + DGR+ + +RTGR S QN+P + +E Sbjct: 564 VAGLLKTVAPDGRIHTCFKQ-TETRTGRISSTEPNMQNIPVRTELGKE------------ 610 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R +A G+ L+ AD + IE R+LA + + +AF +G D++ Sbjct: 611 -------------MRKFFVAPRGRILLDADYSQIELRILANLCEDANMQQAFLSGADIHA 657 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 +T A+ F V VT R+ K + + Y GA + + + ++ Sbjct: 658 STAAQVFGVPREAVTPQMRSAAKAVNFGIIYGIGAYSLSQ-----DIGVSVREADRYIKR 712 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 E + E F + E+ G R++ + N++ QA Sbjct: 713 YLENFPRVEQFMTRIVEDAERTGFVSTLFGR---------RREVPELKS-HNKIQQAA-- 760 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 GR + Sbjct: 761 ----------------------------------GRRI---------------------- 764 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ M+ + ++L VHDE++ E D A Sbjct: 765 AMNTP------IQGTAADIIKIAMIRVYRRLAREQLDARLILQVHDELIVEAAVQDADRA 818 Query: 645 SML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 +++ M W +PL AE + + + Sbjct: 819 AVILREEMEHA--WDMAVPLTAEVGKGESW 846 >gi|167747107|ref|ZP_02419234.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662] gi|167654067|gb|EDR98196.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662] Length = 880 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 83/597 (13%), Positives = 158/597 (26%), Gaps = 127/597 (21%) Query: 91 HRWICTLVLARSNGL---PSALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + A + L + +E + + ++ Sbjct: 393 KSIFDAALAAYLINPLKSTYEYDDISRDYLGIMLPSKKELLDKRKSIFEEGKLLPEGEQI 452 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 C + L E + RG VD Sbjct: 453 IGYE----AYVACACIEPLRKKLTETGMLSLYEEIEIPTMVALHDMEVRGIHVDRKALKE 508 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263 + +L + + + ++L LF L T+ +T VL Sbjct: 509 YGDQLIGRIEELRELIYKEAG-EEFNINSPKQLGVVLFEHMKLEGGKKTKTGYSTSVDVL 567 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + L P + R ++ + L + D R+ G + TGR S Sbjct: 568 EKIEHLYPIISYILEYRQ-LTKLKSTYADGLANYIGDDERIHGKFNQ-TITATGRISSTE 625 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+P +R + EG V AD + Sbjct: 626 PNLQNIPARVELGRA-------------------------IRKVFLPEEGYTFVDADYSQ 660 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA ++G++ + A+E +D++ T + F V QV+ QR K + Sbjct: 661 IELRVLAHLSGDKNLIHAYEMEQDIHARTASEVFGVPIDQVSSIQRRDAKAVNF------ 714 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 GL+ + + Sbjct: 715 --------GIVYGLS------------------------------AFGLSQDLKITRKQA 736 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + + +V E L++ E+ E G + Sbjct: 737 QEYIDKYFETYPKVKEY---LNREVEKGKEEGFVTTMFQ--------------------- 772 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----- 618 R ++ ++ R +Q + DI+ M+ Sbjct: 773 --RIRPIPELKSSNFMQRNF---GERVAMNSP------IQGSAADIIKIAMIRVNMELKK 821 Query: 619 -KAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 K ++L +HDE++ E D++ +L M S +PL + + + Sbjct: 822 RKLKSRLILQIHDELLIEAHDSEVEEVKGILTREMMSAAK--LSVPLSIDIHTGNSW 876 >gi|21324121|dbj|BAB98746.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Corynebacterium glutamicum ATCC 13032] Length = 905 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 91/657 (13%), Positives = 192/657 (29%), Gaps = 137/657 (20%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 A L D + L L + D + H + +L ++ Sbjct: 365 LAIADTKRHAVLVDVADISAEDEKALATWLASED-PKMLHGAKAAYHMLA-GRGFELH-G 421 Query: 92 RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 T + A + + + ++ + + D++ + Sbjct: 422 VVHDTAIAAYLLRPGQRTYELADVY---QRHLQRQLSTNDNGGQLTLLDAADDQSLVDDV 478 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQ 209 A E +T+++ + + E+ + + G VDVA + Sbjct: 479 IAILELSE------ELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQLK 532 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266 + + ++ L + ++L+ LF G+ T+ +T + + Sbjct: 533 TFIGQVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIEAL 592 Query: 267 --KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K P + +R + L L+ + DGR+ T A TGR S Sbjct: 593 AIKNPHPFLDHLLAHRQY-QKMKTT-LEGLIREVAPDGRIHTTFNQTVA-STGRLSSTDP 649 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAG 383 QN+P + + + +RS + EG L+ AD + Sbjct: 650 NLQNIPVRTEAGRK-------------------------IRSGFVVGEGYETLLTADYSQ 684 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RV+A ++ + ++A+ GEDL+ ++ FNV VT + R K M L Sbjct: 685 IEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLV--- 741 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 GL+ + + + Sbjct: 742 -----------YGLSAFGLSQQLSIPAG------------------------------EA 760 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 +++ +++ ++ V E+ + + Sbjct: 761 KQIMESYFERFGGVQRYLREIVEEARKA--------------------------GYTETL 794 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620 GR ++ ++ R +Q + DI+ M+ ++ Sbjct: 795 FGRRRYLPELTSDN---RVARENAERAALNAP------IQGTAADIIKVAMIRVDRSLKE 845 Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + + M + +PL+ + + Sbjct: 846 AAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNAIK--LSVPLEVSAGDGVNW 900 >gi|254775605|ref|ZP_05217121.1| DNA polymerase I [Mycobacterium avium subsp. avium ATCC 25291] Length = 913 Score = 280 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 102/673 (15%), Positives = 195/673 (28%), Gaps = 146/673 (21%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKAC 83 A D A D D + L L + H + L Sbjct: 358 AYDADCTALAIVSADGEGRYIDTSALDPDDEAALASWLADPGPPKALHEAK-----LAMH 412 Query: 84 FNLDIPIHRWI------CTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARF 133 D+ W T + A +L + L+ + ++ ++ Sbjct: 413 ---DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRYLRRELRAENPQQQQLSLL 469 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193 + + + A + D + R L + + + Sbjct: 470 DDTDGTDDQAVQTLILRAVAVLDLAD--ALDEELARINSTSLLSGME--LPVQRVLAGME 525 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 + G VD+ L L + + ++ + + ++L+ LF E + Sbjct: 526 NAGIAVDLDLLSELQSDFAHQIRDAAEAAYAVIGKQI-NLGSPKQLQAVLFDELQMPKTK 584 Query: 254 LTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 T+T T L S P + +R A+R V ++ L+ ++ SDGR+ T Sbjct: 585 RTKTGYTTDADALQSLFDKTGHPFLQHLLAHR-DATRLKVT-VDGLLNSVASDGRIHTTF 642 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + R Sbjct: 643 NQTIAA-TGRLSSTEPNLQNIPIRTEAGRRT-------------------------RDAF 676 Query: 369 IASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + +G +L+ AD + IE R++A ++ + ++AF TGEDL+ +R+F V +VT + Sbjct: 677 VVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGE 736 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K M L GL+ + +K Sbjct: 737 LRRRVKAMSYGL--------------AYGLSAYGLSQQLKI------------------- 763 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + A+ + V + + + + + Sbjct: 764 -----------STEEAKEQMDAYFARFGGVRDYLHAVVEQARK----------------- 795 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + GR ++ ++ R +Q + Sbjct: 796 ---------DGYTSTVLGRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAA 837 Query: 608 DILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKG 660 DI+ M+ KA I+L VHDE++ E + L M + Sbjct: 838 DIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALARDKMGGA--YPLD 895 Query: 661 LPLKAEGYESKRY 673 +PL+ + + Sbjct: 896 VPLEVSVGYGRSW 908 >gi|159038912|ref|YP_001538165.1| DNA polymerase I [Salinispora arenicola CNS-205] gi|157917747|gb|ABV99174.1| DNA polymerase I [Salinispora arenicola CNS-205] Length = 899 Score = 280 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 96/647 (14%), Positives = 181/647 (27%), Gaps = 132/647 (20%) Query: 44 LWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +D + L L + V H+S A I T + A Sbjct: 363 WFDPGRLEAADESALAGWLADETRPKVLHDSKPAVLAFAAH-GWSIEGIT-RDTQIAAYL 420 Query: 103 NGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 L + +++ + +G ++ ++N Sbjct: 421 ARPDQRSYDLVDLALRYLHRELRVDTP-DTGQLTFEGLGNDGEAEQNLMLRA--RATLDL 477 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 D ++R+ + ++ E L + ++ G D L E Sbjct: 478 ADAIDAELSRDGEQSSRLMAGVELPLMRVLASMERTGIAADTQYLSELEAQFAAEVKAAA 537 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNK--KLTPQAI 274 Q + ++L+ LF+E GL +T T L P Sbjct: 538 QGAYEAVG-REFNLGSPKQLQEILFVELGLPKTKRIKTGYTTDADALQWLHAQNPHPVLG 596 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R ++ ++ L+++++ DGR+ T A+ TGR S QN+P + Sbjct: 597 HLLRHR-DVAKLKTT-VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRTE 653 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMA 393 +R + EG + L+ AD + IE R++A ++ Sbjct: 654 EGRR-------------------------IRRAFVVGEGYECLLTADYSQIEMRIMAHLS 688 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + + AF +G D + T + F V +VT DQR K M Sbjct: 689 ADDVLIDAFNSGRDFHAATASSVFQVPVEEVTTDQRRKIKAMNYG--------------L 734 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 GL+ + + + + Sbjct: 735 AYGLSAFGLSQQ------------------------------LGVTAEEARGLMEIYFAG 764 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 V + E+ + +G GR D+ Sbjct: 765 FGGVRDYLQEV---VARARHDGYTETVL-----------------------GRRRYLPDL 798 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLT 627 ++ R +Q + DI+ MM A ++L Sbjct: 799 VSDN---RQRREMAERMALNAP------IQGSAADIIKVAMMRVDSAVHDAGLRSRMLLQ 849 Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E + L M + +PL+ + + + Sbjct: 850 VHDELVFEVAPGERERLEELVRREMGEA--YPLSVPLEVSVGDGRDW 894 >gi|283797772|ref|ZP_06346925.1| DNA polymerase I [Clostridium sp. M62/1] gi|291074450|gb|EFE11814.1| DNA polymerase I [Clostridium sp. M62/1] Length = 986 Score = 280 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 82/519 (15%), Positives = 152/519 (29%), Gaps = 121/519 (23%) Query: 167 VTREIFKRLEPLSSKEQELWYL--DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + +++ + E+ + + G CV H + + V+ +L+QE+ Sbjct: 573 LMKKLEELDMKELFYTIEMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEIYG 632 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 T + ++L LF + L T+ +T VL P ++ + R Sbjct: 633 ETG-EHFNINSPKQLGEILFGKMELPYGKKTKTGYSTAADVLEKLAPEYPVVQKILDYRQ 691 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ + L + DGR+ GT + TGR S QN+P E Sbjct: 692 -LTKLKSTYADGLAGYIREDGRIHGTFNQ-TITATGRLSSTEPNLQNIPVRMELGRE--- 746 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R + EG V AD + IE RVLA M+G++ ++A Sbjct: 747 ----------------------IRRVFVPEEGSVFVDADYSQIELRVLAHMSGDERLIEA 784 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 + ED++ T + F+V +VT QR K + G++ Sbjct: 785 YRKAEDIHAITASEVFHVPLEEVTPLQRRNAKAVNF--------------GIVYGIS--- 827 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + + + + V + Sbjct: 828 ---------------------------AFGLSEDLSITRKEALEYINRYFETYPDVKKF- 859 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 L + E+ E G K R ++ + Sbjct: 860 --LDRLVEEGKEKGYVTTMFK-----------------------RRRPVPELSSKNFMQR 894 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635 + R +Q + DI+ M IVL VHDE++ E Sbjct: 895 SF---GERVAMNSP------IQGTAADIIKIAMNRVDNRLRREGLKSKIVLQVHDELLIE 945 Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + L+ + + Sbjct: 946 AKKEELKRVQTILSEEMKHAAD--LRVALEIDMKTGNSW 982 >gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190] gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190] Length = 939 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 101/635 (15%), Positives = 188/635 (29%), Gaps = 134/635 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPSA---LKAV 112 L E L + V +H+ VL A + T + A L + Sbjct: 416 LGEWLADPAVPKASHDVK---AVLHALRGRGWTLAGLTSDTALAAYLAKPGQRSFDLADL 472 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT-VTREI 171 L + EG + E + A E D Sbjct: 473 ALRY-LRRELAMEGAPADGQLSLLGGEEEADRAHADAEMVAASAVAELA--DALGAELAE 529 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 ++ L EQ L ++ + G VD A +L + + Q+ ++ + Sbjct: 530 KEQNGLLLELEQPLAFVLADLEAAGIAVDRANLESLEAEFAGQVAQAAQDAYAVIGKEI- 588 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRS 286 + ++L+ LF E G+ T+T T L+ + + +R A+R Sbjct: 589 NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALAGLFEQTGHEFLQHLLLHR-DATRL 647 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 V ++ L++++ +DGR+ T A+ TGR S QN+P + + Sbjct: 648 KVT-VDGLLKSIAADGRIHTTYSQTIAA-TGRLSSTEPNLQNVPIRTAAGRR-------- 697 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +R+ + +G +L+ AD + IE R++A ++ + ++AF + Sbjct: 698 -----------------IRTAFVVGDGFSQLMTADYSQIEMRIMAHLSEDAALIEAFRSQ 740 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D + T ++ F V A V+ +QRA K M L Y + L Sbjct: 741 RDFHSETASKVFGVDAADVSPEQRAKIKAMNYGLAYG-----LSAFGLSGQL-------- 787 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + + V + + Sbjct: 788 -------------------------------RISTEEARGLMDDYFETFGGVRDYLRSIV 816 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + + GR D+ ++ Sbjct: 817 DVARK--------------------------DGYTATMLGRRRYLPDLTSDN---RQRRE 847 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDT 639 R +Q + DI+ M+ A ++L VHDE+V E D Sbjct: 848 MAERMALNAP------IQGSAADIIKVAMLRVHAALQAEGLRSRMLLQVHDELVLEVADG 901 Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + L M + +PL+ + Sbjct: 902 ERDAVDALVRREMAAAHE--LSVPLEVSVGYGASW 934 >gi|169831562|ref|YP_001717544.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C] gi|169638406|gb|ACA59912.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C] Length = 878 Score = 279 bits (714), Expect = 9e-73, Method: Composition-based stats. Identities = 93/654 (14%), Positives = 167/654 (25%), Gaps = 140/654 (21%) Query: 30 VILFAFGFDDHPVELWDCVHDP-VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 + F + L + ++ + V HN+ + L+ + D+ Sbjct: 338 IEALGFSVEAGN-YLLPLGAADLEILAGVRRLFADAAVAKHMHNAK-D--FLRWAPDFDL 393 Query: 89 PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 + ++V A L+ V L+ D Sbjct: 394 A-NICFDSMVAAYLVNPLAANQQLEDVVHQYL----------NLVLVPDGPAAPATAADC 442 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 + + Y E+ + E L + + G VD Sbjct: 443 IRRLYPVLRAELRGY---------ELDYLFD---RVELPLTRVLADMELAGVAVDRDQLE 490 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262 L++ +L + +L + +L LF + GL T+ +T V Sbjct: 491 ALSEEFGTRAGELAARICTLAG-EDFNLNSPRQLGYILFEKLGLPAGKKTKTGYSTDAGV 549 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSG 321 L + A + R + + L ++ GRL TL + TGR S Sbjct: 550 LLDLAEKHEIAALLLEYRQ-LIKLKTTYADGLAALVDPATGRLHTTLHQ-TVTNTGRLSS 607 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVAD 380 QN+P +R I + L+ AD Sbjct: 608 AEPNLQNIPIRMEEGRR-------------------------IRKVFIPRDPARVLLTAD 642 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA ++G+ + AF +D++ T A F V VT + R+ K + + Sbjct: 643 YSQIELRILAHLSGDPALITAFRDEQDIHARTAAEVFGVPLEMVTPEMRSRAKAVNFGII 702 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y L + + + + E + Sbjct: 703 YGIS-----DFGLARDLKVTRAEAREYIQRYFARLPGVKEYIDTAIRSARERGYVTTALN 757 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + V +A T G A Sbjct: 758 R--RRPLPELFSANHTVRSFG---ERAAVNTPIQGTAADII------------------- 793 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 L + R R L M+ Sbjct: 794 ------KLAMVKIH---------ARMRERN-------------------LKTLMI----- 814 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 L VHDE++ + P + + L M + +PL + + Sbjct: 815 -----LQVHDELLFDVPAEEVCTVAPLVKAEMETVLP--LNVPLTVDLKIGHNW 861 >gi|303235252|ref|ZP_07321870.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4] gi|302493566|gb|EFL53354.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4] Length = 875 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 86/668 (12%), Positives = 198/668 (29%), Gaps = 153/668 (22%) Query: 35 FGFDDHPVEL------WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FN 85 + D+ PV + + + KE E+ D+ F+ + Sbjct: 328 YYVDNEPVIFAIYTDKVYITRNVDLVESFKEEFESKDINK----LSFDIKPCIYHLMRYG 383 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG-ETHECLYD 144 +DI + + +++ ++ ++I K E Sbjct: 384 IDIS-YNYDDVVIIEYLLDPSKTSYSM----------ERSDPKVIGYDFKPLEDITGKGK 432 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ---------ELWYLDQTINDR 195 K + Y + T ++++++ + ++ L + + Sbjct: 433 SKKTILESDEKEIDNYIVKYMMFTNKLYEKISEIEEEDMMHLYRDVEIPLIKVLCDMEFT 492 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G CV + ++ + E ++ +E L + + ++L LF + L + Sbjct: 493 GVCVKKETLVEMGELFEDEIKSIEDSVEELIGKKI-NINSSKQLAEVLFEDLELPVIKKN 551 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T Q VL + + R ++ ++ +V+ + DG++ T Q Sbjct: 552 KTGPSTDQEVLEALSGRHEIIDYILRYR-TITKLKTTYIDGMVDLIKKDGKIHTTFQQTI 610 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 A +TGR S QN+P + +R + S Sbjct: 611 A-QTGRISSTNPNLQNIPIRTEEGR-------------------------LIRKAFVPSG 644 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G L+ AD + IE RVLA +A ++ + AF+ G D++ T + F V +VT QR+ Sbjct: 645 GNVLLDADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNA 704 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + G+ + + + Sbjct: 705 KAVNFGIV--------------YGIGDYSLSKDLHI------------------------ 726 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + + + + ++ ++ Sbjct: 727 ------TRKEAKEYIENYLDTYKGIKQYMEDIVAIGKE---------------------- 758 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 + R ++ + R +Q + DI+ Sbjct: 759 ----KGYVETIMNRRRYIPELKSKN---YNVRSFGERVA------LNTPIQGSAADIIKV 805 Query: 613 GMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKA 665 M+ K ++L VHDE++ + P + ++ +MT + + Sbjct: 806 AMVKFYNRLNEEKLKAKLILQVHDELIVDCPKDEREKVLEIMKDVMTHAVDLKVDMKIDV 865 Query: 666 EGYESKRY 673 + + Sbjct: 866 NS--ADNW 871 >gi|256832458|ref|YP_003161185.1| DNA polymerase I [Jonesia denitrificans DSM 20603] gi|256685989|gb|ACV08882.1| DNA polymerase I [Jonesia denitrificans DSM 20603] Length = 893 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 89/681 (13%), Positives = 180/681 (26%), Gaps = 135/681 (19%) Query: 10 TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTI 68 TR P+ L G + A + L++ L + Sbjct: 326 TRQPMGLAVAGKGVPSR-GTAWQIALSATPESAVVVTLDELSDADSVALRQWLMDPHYPK 384 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEE 125 + H++ L + + T + A L+ + + Sbjct: 385 IVHSAKEAWHALHSFSG-GVK-GVIADTELAAYLAFPDQRSYGLEDLSIRY-----VSRD 437 Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185 + + + + E L Sbjct: 438 ITPVAHQAQGSLDLGLDDTDDALRALANRAAVLPQLAQALDAELSDRSLTALYQEMELPL 497 Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 + + G VD+ +L+ + ++ + V + ++L+ LF Sbjct: 498 TVVLAQMEHVGVAVDLEQLRSLDAFFAHQGSEAQKAAFEAIGRQV-NLGSPKQLQEVLFD 556 Query: 246 ETGLHLEDLTET---TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 + + +T T L+ K P + R +++ + L++++ Sbjct: 557 QLDMPKTKKIKTGYTTDAASLADLFVKTGHPFLQHLLEYR-DSTKLRQT-VEGLLKSVAD 614 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 DGR+ T Q A+ TGR S QN+P + + Sbjct: 615 DGRVHTTFQQTVAA-TGRLSSTDPNLQNIPIRTETGRR---------------------- 651 Query: 361 SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R + EG L+ AD + IE R++A ++ + + AF+ GEDL+ AR F V Sbjct: 652 ---IRQGFVVGEGLDTLLTADYSQIEMRIMAHLSQDDGLISAFQAGEDLHNFVGARVFGV 708 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 + +VT R+ K M L Y + Sbjct: 709 SIDEVTPQMRSKVKAMSYGLAYG-----LSAFGLSKQ----------------------- 740 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 + + + V + + T Sbjct: 741 ----------------LNISVGEASTLMDDYFTRFGGVRDYLTSVVARARTT-------- 776 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 GR D+ ++ R Sbjct: 777 ------------------GYTETIMGRRRYLPDLTSDN---RQRRENAERVALNAP---- 811 Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMT 652 +Q + D++ + M+ A ++L +HDE++ E ++ A + M Sbjct: 812 --IQGSAADVIKQAMLGVDAAFRSEGLSSRLLLQIHDELIVEVAPGEQEIAERIVREEMA 869 Query: 653 SNPSWAKGLPLKAEGYESKRY 673 +PL + + Sbjct: 870 GAMQ--LSVPLAVSVGTGQNW 888 >gi|325831762|ref|ZP_08164951.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1] gi|325486431|gb|EGC88881.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1] Length = 875 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 79/594 (13%), Positives = 150/594 (25%), Gaps = 143/594 (24%) Query: 94 ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 + + A+ +A + E K+ + + + Sbjct: 407 FDLGLAGYVLNSSVSEYSYDALLDAYCGG--VLPEAKDEAGSAAAQAAAARMLVKPLTDA 464 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 Y D L + + G VD L Sbjct: 465 LGRDESKRAYFDID------------------LPLVAVLAIVERTGAAVDCDRLAELGAT 506 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL---TETTCQRVLSSNK 267 E +L + + + ++L LF GL +T VL Sbjct: 507 TQAELDELRARIIEIAG-EEFNLDSPKQLGHILFEVLGLRTLKKNQRGYSTDAAVLKELS 565 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 V R ++ ++ L DGR+ + TGR S Q Sbjct: 566 NDHEMPALVLRYR-ELAKIKSTYIDALPRMRADDGRVHTCFNETVTT-TGRLSSSEPNLQ 623 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEA 386 N+P + +R C + +G K + AD + IE Sbjct: 624 NIPVRTEFGR-------------------------QIRECFVPLEKGHKFLSADYSQIEL 658 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA ++ ++ + AF +G D + T +R F + VT + R+ K + + Y Sbjct: 659 RLLAHLSNDEHLVAAFCSGADFHAATASRVFGLPVEDVTPELRSRAKAVNFGIVYGQ--- 715 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 Q + L + E + + E + Sbjct: 716 --QAFGLSQSLGIPFGEAKEMIERYFEAYPGVRAYLDRTIAEAKEKGYAETMF------- 766 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 ++R +P + Sbjct: 767 ----------------------------------GRKRHIPELKAANATQRGF------- 785 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620 R+ +N +Q + DI+ M + Sbjct: 786 --------GERTAMNHP------------------MQGSAADIIKLAMTEVQRRIMERGF 819 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+ P+ + S + +M +PL + + + Sbjct: 820 EAKLLLQVHDELDFSVPEGEIEELSAIVKDVMEHIVD--LRVPLDVDVSYADNW 871 >gi|317487766|ref|ZP_07946360.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA] gi|316913137|gb|EFV34652.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA] Length = 875 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 78/594 (13%), Positives = 150/594 (25%), Gaps = 143/594 (24%) Query: 94 ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 + + A+ +A + E K+ + + + Sbjct: 407 FDLGLAGYVLNSSVSEYSYDALLDAYCGG--VLPEAKDEAGSAAAQAAAARMLVKPLTDA 464 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 Y D L + + G VD L Sbjct: 465 LGRDESKRAYFDID------------------LPLVAVLAIVERTGAAVDCDRLAELGAT 506 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL---TETTCQRVLSSNK 267 E +L + + + ++L LF GL +T VL Sbjct: 507 TQAELDELRARIIEIAG-EEFNLDSPKQLGHILFEVLGLRTLKKNQRGYSTDAAVLKELS 565 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 V R ++ ++ L DGR+ + TGR S Q Sbjct: 566 NDHEMPALVLRYR-ELAKIKSTYIDALPRMRADDGRVHTCFNETVTT-TGRLSSSEPNLQ 623 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEA 386 N+P + +R C + +G K + AD + IE Sbjct: 624 NIPVRTEFGR-------------------------QIRECFVPLEKGHKFLSADYSQIEL 658 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA ++ ++ + AF +G D + T +R F + V+ + R+ K + + Y Sbjct: 659 RLLAHLSNDEHLVAAFCSGADFHAATASRVFGLPVEDVSPELRSRAKAVNFGIVYGQ--- 715 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 Q + L + E + + E + Sbjct: 716 --QAFGLSQSLGIPFGEAKEMIERYFEAYPGVRAYLDRTIAEAKEKGYAETMF------- 766 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 ++R +P + Sbjct: 767 ----------------------------------GRKRHIPELKAANATQRGF------- 785 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620 R+ +N +Q + DI+ M + Sbjct: 786 --------GERTAMNHP------------------MQGSAADIIKLAMTEVQRRIMERGF 819 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+ P+ + S + +M +PL + + + Sbjct: 820 EAKLLLQVHDELDFSVPEGEIEELSAIVKDVMEHIVD--LRVPLDVDVSYADNW 871 >gi|325283273|ref|YP_004255814.1| DNA polymerase I [Deinococcus proteolyticus MRP] gi|324315082|gb|ADY26197.1| DNA polymerase I [Deinococcus proteolyticus MRP] Length = 897 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 88/600 (14%), Positives = 164/600 (27%), Gaps = 148/600 (24%) Query: 85 NLDIPIHRWICTLVLARSNGLPSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 D+ L+LA + + AV + L + Sbjct: 431 GGDVTPG--DDPLLLAYLLDPANTAMPAVAKRY-LDTD--------------WPEDAGTR 473 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 E + + +++ +E S + + RG +D Sbjct: 474 AAIAAQLLELLPPQLDAAR------LKLYTEVEKPLSG------VLARMEARGVRLDSEY 521 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TT 258 L+ + +L+ ++ S R ++L+ L+ E GL T+ +T Sbjct: 522 LQGLSLALAERLERLEAQIHEAAG-REFSIRSRDQLEAVLYDELGLASGKKTKLTGKRST 580 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 L + P + R + L+ L +N T A TGR Sbjct: 581 AMTALEPLRDEHPIIPLILEYR-ELEKLRGTYLDPLPRLVNPRTGRLHTTFAQTAVATGR 639 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378 S QN+P S +R IA G +LV Sbjct: 640 LSSLNPNLQNIPIRSEEGR-------------------------QIRKGFIADGGFRLVA 674 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + +E R++A +AG++ +AF+ G D++ T A+ + + V +QR K + Sbjct: 675 ADYSQLELRLMAHIAGDEPMQRAFQEGADIHRRTAAQVLGLDESTVDVNQRRAAKTVNF- 733 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G++ + E Sbjct: 734 -------------GVLYGMS------------------------------AHRLSNELGI 750 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + + + + + + E ++G Sbjct: 751 PYAEATSFIENYFGIYPGIQRY---IEETLEFGRQHGYVETLY----------------- 790 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM--- 615 GR ++ R +Q + DI+ M+ Sbjct: 791 ------GRRRYVPELKARN---RNLREAGERLAYNMP------IQGTAADIMKMAMVALE 835 Query: 616 -NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P + L +M +PL E S + Sbjct: 836 PQLDALGARMLLQVHDELLIEAPADRAEEVAALTRQVMEGVVE--LNVPLAVEAGISDNW 893 >gi|315650935|ref|ZP_07903975.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986] gi|315486781|gb|EFU77123.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986] Length = 880 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 84/599 (14%), Positives = 172/599 (28%), Gaps = 131/599 (21%) Query: 91 HRWICTLVLARSNGL---PSALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYD 144 + V A ++ + +SS+ GK ++ K + Sbjct: 393 KNFYDLSVAAYLINPLKDSYFVEDIARDYMGSGVSSKAEMIGKSKLSEVLKFNDEKAEKY 452 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 ++ + K + ++ + E L Y + + G VD Sbjct: 453 FASESYVALFASDYLLKKLNELELTRLY------ENVELPLIYSLARMENTGVRVDEKRL 506 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + +KL+ + + ++L LF + L T+ +T Sbjct: 507 KDYADTLLEKISKLEASIIDKAG-ESFNINSPKQLGEILFGKLKLSGGKKTKTGYSTAAD 565 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + R ++ L + DGR+ G+ + TGR S Sbjct: 566 VLEKLAPEHEIIRDILEYRQ-LTKLNSTYATGLAGYIRDDGRIHGSFNQ-TITATGRISS 623 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 QN+P + + +R + G V AD Sbjct: 624 TDPNLQNIPVRTE-------------------------MGSKIRDIFVPKPGYVFVDADY 658 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE RVLA M+G++ ++++ T D++ T A+ F+V +VT + R K + Sbjct: 659 SQIELRVLASMSGDEKLIESYHTAADIHAATAAQVFHVPLDKVTPELRRNAKAVNF---- 714 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 G++ + + Sbjct: 715 ----------GVVYGIS------------------------------AFGLSEDLSISRK 734 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 + + + V L + E G Sbjct: 735 EALDYINNYFKIYEGVKRF---LDKQVADAKEKGYVKTM--------------------- 770 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620 GR ++ ++ + + + +Q + DI+ M+ +A Sbjct: 771 --FGRIRPIPEIKSSNFMTRSFGDR---------VAMNSPIQGSAADIMKIAMIRVDEAL 819 Query: 621 -----GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 +IVL +HDE++ E + + + M S +PL+ + + K + Sbjct: 820 NKSGFDANIVLQIHDELLVEVRKDEVYKVKEIVERSMREAVS--LKVPLEVDAHIGKTW 876 >gi|227890554|ref|ZP_04008359.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741] gi|227867492|gb|EEJ74913.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741] Length = 892 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 104/672 (15%), Positives = 216/672 (32%), Gaps = 118/672 (17%) Query: 12 SPIDLTKCGICKYAED---VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68 S D + E+ +I F+ DD L D + + +K LE+ +V + Sbjct: 325 SDNDEIVFNLEIDGENYHTAEIIGFSIKIDDK--YLVSDDIDLLKKKQIKNLLESDEVEV 382 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 + + L + + L+++ +G + E E Sbjct: 383 DLFDGKRQYVGLNR-LGVTLSKIN-FDLLLVSYLLDNSENSNDLGLLAQQHEYYDVESDE 440 Query: 129 LIARFCKGETHECLYDRNKPN-HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187 I + KG H D+ H K + E ++L+ + E+ L Sbjct: 441 QI--YGKGAKHAVPKDKEVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLSI 498 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + G VD T+ + ++L+QE+ + + ++L LF + Sbjct: 499 VLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAG-EEFNLNSPKQLGVILFEKL 557 Query: 248 GLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 L + T+ +T VL + ++P + R ++ + L++ ++ Sbjct: 558 KLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQ-LAKIQSTYIEGLLKVVSKKDGK 616 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 T + TGR S QN+P + + Sbjct: 617 AHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRK-------------------------I 651 Query: 365 RSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422 R + S G ++ +D + IE RVLA ++ ++ +AF+ G D++ +T R FNV P Sbjct: 652 RQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSPD 711 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT + R K + + Y + + ++ ++ + + +++ Sbjct: 712 EVTPNMRRQAKAVNFGIVYGIS-----DYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYM 766 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + E E+ + + Sbjct: 767 EKIVEFAKENGYVETIF-----------------------------------------NR 785 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 RR +P + + R+ +N+ + K+ + Sbjct: 786 RRYLPDIKSRNFNLRSF---------------AERTAMNSPIQG---SAADIIKVAMINM 827 Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGL 661 Q ++L E ++L VHDE++ E P + + +M S + Sbjct: 828 Q----EMLKE-----KNLQAKMLLQVHDELIFEAPTEEIPLLEDMVPKVMDSAVK--LDV 876 Query: 662 PLKAEGYESKRY 673 PLK E + + Sbjct: 877 PLKVESKHGQTW 888 >gi|323484247|ref|ZP_08089615.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum WAL-14163] gi|323694766|ref|ZP_08108924.1| DNA polymerase I [Clostridium symbiosum WAL-14673] gi|323402399|gb|EGA94729.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum WAL-14163] gi|323501203|gb|EGB17107.1| DNA polymerase I [Clostridium symbiosum WAL-14673] Length = 890 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 91/675 (13%), Positives = 186/675 (27%), Gaps = 150/675 (22%) Query: 18 KCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALEN-TDVTIVAHNS 73 + G+ E+ V A + + + + + ++E V+++ + Sbjct: 321 EAGMQLVIENGQVAAMALCYGEEKIYSIPAAGFITGEYLAERMEELCTAVPSVSVL--DL 378 Query: 74 YFERTVLKACFNLDIPIHR-------WICTLVLARSNGL---PSALKAVGEALKLSSQKM 123 + LK + V + + Sbjct: 379 KPQLPYLKNRDRRVVDGSGNDGGSEAMFDAGVAGYLLNPLKDTYDYDDLARDY--LDMTV 436 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV-----TVTREIFKRLEPL 178 +L+ + + + + Y + +++ Sbjct: 437 PSKADLMGKTS--------FTAAFDMMPDKAQTCVCYMAYVAWKAKPELVKKLEASGMRK 488 Query: 179 SSKEQELWYL--DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + E+ + + + G CV + + V+ KL+QE+ T + Sbjct: 489 LFFDIEMPVIYSLYHMQEEGICVRREELRCYGERLKVQIDKLEQEIYQDTET-EFNINSP 547 Query: 237 EKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + T+ +T VL P +V + R ++ + Sbjct: 548 KQLGEILFDRMKMPGGKKTKTGYSTAADVLEKLAPEYPVVRKVLDYRQ-LTKLKSTYADG 606 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L + DGR+ GT + TGR S QN+P E Sbjct: 607 LAAFIREDGRIHGTFNQ-TITATGRISSTEPNLQNIPVRMELGRE--------------- 650 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R + EG L+ AD + IE RVLA M+G++ + A+ ED++ T Sbjct: 651 ----------IRKVFVPQEGCVLLDADYSQIELRVLAHMSGDERLIDAYRMAEDIHAITA 700 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F+V +VT QR K + G++ Sbjct: 701 SEVFHVPLEEVTPLQRRNAKAVNF--------------GIVYGIS--------------- 731 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + + V + + L + ++ Sbjct: 732 ---------------AFGLSEDLSISRKEALEYINRYFETYPEVKKFLDHLVELGKE--- 773 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 + GR ++ + + R Sbjct: 774 -----------------------QGYVETMFGRRRPIPELKSANFMQRSF---GERVAMN 807 Query: 594 GGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML 647 +Q + DI+ M+ K +VL VHDE++ ET + + Sbjct: 808 SP------IQGTAADIIKIAMIRVDQRLRKEKLRSRLVLQVHDELLIETWTDELEKVQKV 861 Query: 648 -YHLMTSNPSWAKGL 661 M + L Sbjct: 862 LEEEMKNAAHLKVEL 876 >gi|19552567|ref|NP_600569.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032] gi|62390237|ref|YP_225639.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032] gi|41325574|emb|CAF21363.1| DNA POLYMERASE I [Corynebacterium glutamicum ATCC 13032] Length = 880 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 91/657 (13%), Positives = 192/657 (29%), Gaps = 137/657 (20%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 A L D + L L + D + H + +L ++ Sbjct: 340 LAIADTKRHAVLVDVADISAEDEKALATWLASED-PKMLHGAKAAYHMLA-GRGFELH-G 396 Query: 92 RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 T + A + + + ++ + + D++ + Sbjct: 397 VVHDTAIAAYLLRPGQRTYELADVY---QRHLQRQLSTNDNGGQLTLLDAADDQSLVDDV 453 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQ 209 A E +T+++ + + E+ + + G VDVA + Sbjct: 454 IAILELSE------ELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQLK 507 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266 + + ++ L + ++L+ LF G+ T+ +T + + Sbjct: 508 TFIGQVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIEAL 567 Query: 267 --KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K P + +R + L L+ + DGR+ T A TGR S Sbjct: 568 AIKNPHPFLDHLLAHRQY-QKMKTT-LEGLIREVAPDGRIHTTFNQTVA-STGRLSSTDP 624 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAG 383 QN+P + + + +RS + EG L+ AD + Sbjct: 625 NLQNIPVRTEAGRK-------------------------IRSGFVVGEGYETLLTADYSQ 659 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RV+A ++ + ++A+ GEDL+ ++ FNV VT + R K M L Sbjct: 660 IEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLV--- 716 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 GL+ + + + Sbjct: 717 -----------YGLSAFGLSQQLSIPAG------------------------------EA 735 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 +++ +++ ++ V E+ + + Sbjct: 736 KQIMESYFERFGGVQRYLREIVEEARKA--------------------------GYTETL 769 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620 GR ++ ++ R +Q + DI+ M+ ++ Sbjct: 770 FGRRRYLPELTSDN---RVARENAERAALNAP------IQGTAADIIKVAMIRVDRSLKE 820 Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + + M + +PL+ + + Sbjct: 821 AAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNAIK--LSVPLEVSAGDGVNW 875 >gi|257791761|ref|YP_003182367.1| DNA polymerase I [Eggerthella lenta DSM 2243] gi|257475658|gb|ACV55978.1| DNA polymerase I [Eggerthella lenta DSM 2243] Length = 875 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 79/601 (13%), Positives = 152/601 (25%), Gaps = 143/601 (23%) Query: 87 DIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 ++ R + + A+ +A + E K+ + Sbjct: 400 ELMGMRAFDLGLAGYVLNSSVSEYSFDALLDAYYGG--VLPETKDEAGAVAAQAAAARML 457 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 + Y D L + + G VD Sbjct: 458 VGPLTDALGRDESKRAYFDID------------------LPLVAVLAIVERTGAAVDCDR 499 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL---TETTCQ 260 L E +L + + + ++L LF GL +T Sbjct: 500 LAELGATTQAELDELRARIIEIAG-EEFNLDSPKQLAHILFEVLGLRTLRKNQRGYSTDA 558 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL V R ++ ++ L DGR+ + + TGR S Sbjct: 559 AVLKELSNDHELPALVLRYR-ELAKIKSTYIDALPRMRADDGRVHTSFNETVTT-TGRLS 616 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVA 379 QN+P + +R C + EG + A Sbjct: 617 SSEPNLQNIPVRTEFGR-------------------------QIRECFVPLEEGHAFLSA 651 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R+LA ++ ++ + AF +G D + T +R F + V+ + R+ K + + Sbjct: 652 DYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASRVFGLPVEDVSPELRSRAKAVNFGI 711 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y Q + L + E + + E + Sbjct: 712 VYGQ-----QAFGLSQSLGIPFGEAKEMIERYFEAYPGVRAYLDRTIAEAKEKGYAETMF 766 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 ++R +P + Sbjct: 767 -----------------------------------------GRKRHIPELKAANATQRGF 785 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 R+ +N +Q + DI+ M + Sbjct: 786 ---------------GERTAMNHP------------------MQGSAADIIKLAMTEVQR 812 Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKR 672 ++L VHDE+ P+ + S + +M +PL + + Sbjct: 813 RIMERGFEAKLLLQVHDELDFSVPEGEIEELSAIVKDVMEHIVD--LRVPLDVDVSYADN 870 Query: 673 Y 673 + Sbjct: 871 W 871 >gi|197303212|ref|ZP_03168254.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC 29176] gi|197297752|gb|EDY32310.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC 29176] Length = 871 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 82/590 (13%), Positives = 162/590 (27%), Gaps = 136/590 (23%) Query: 94 ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 +V A + E+ LI + T C E Sbjct: 404 FDVIVAAYLLNPLKS------DYDYEDVAREQLGLLIDEKTEESTKACYEAYTAYMAVEP 457 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 E + E L + + G V+ + Sbjct: 458 LNRK-----------MEETGMTKLFREIEMPLVFTLYEMEQAGIHVEGEALKAYGDQLGN 506 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT 270 +L++E+ + + ++L LF + + T+ +T VL Sbjct: 507 RIVELEKEIYDMAG-ETFNINSPKQLGVILFEKLEMPHAKKTKTGYSTAADVLDKLAPEY 565 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 P ++ R ++ + L + DGR+ G + TGR S QN+P Sbjct: 566 PIVAKILEYRQ-LTKLKSTYADGLATFIGPDGRIHGKFNQ-TITATGRISSTEPNLQNIP 623 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 +R + EG V AD + IE R+LA Sbjct: 624 VRMELGR-------------------------LIRKVFVPKEGCVFVDADYSQIELRILA 658 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 +G++ ++A+ D++ T ++ F+V +VT QR K + + Y Sbjct: 659 HCSGDEQLIQAYREARDIHRMTASQVFHVPFDEVTDLQRRNAKAVNFGIVYG-----ISS 713 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 + L+ R + + Sbjct: 714 FGLSQDLS---------------------------------------ITRKEAARYIEHY 734 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + + ++ ++ G A+ GR Sbjct: 735 FETYPGIKTFLDQCVADAKE---KGYAVTL-----------------------FGRRRPV 768 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDI 624 ++ ++ + R +Q + DI+ M+ + Sbjct: 769 PELKSSNFMQRSF---GERVAMNAP------IQGTAADIIKIAMIRVSDEMKKQNMKSRM 819 Query: 625 VLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 +L VHDE++ E + + + M S +PL A+ + K + Sbjct: 820 ILQVHDELLIEAAEEEVDEVKKILKEEMEHAAS--LSVPLLADMHTGKNW 867 >gi|62327350|ref|YP_224063.1| hypothetical protein BPKS7gp41 [Salmonella phage SS3e] gi|57472384|gb|AAW51246.1| hypothetical protein [Salmonella phage SS3e] Length = 461 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 143/441 (32%), Positives = 222/441 (50%), Gaps = 18/441 (4%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L++D ET S DL K G YAE +++ + FD+ PV++WD MP+ L+ Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 A+ ++++ +V N F+R V+K C+ ++ + I T+++A + LP +L A+ Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120 Query: 113 GEALKLS--SQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169 E L + K + GK LI RF K R H + W F Y K D+T R Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180 Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E++K++ S E + +LDQ INDRG+ VDVALA + V + +L +E + Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRKYG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G ++ L L+ + + ++T +L+ + L A + R+ A+ +A Sbjct: 241 GSLTGKDFLPILQELAPAH---RIHNAQKSTLNDLLAD-EDLPDDARTIIEMRLGAASTA 296 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH-L 346 K L+ +SD R RG LQ+ GA RT RW+G F PQNL R +ELD+ I L Sbjct: 297 STKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAALL 356 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D ++ + VRSC+I G+K VVAD + +E R LAW+AGE+ L F G Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416 Query: 407 DLYVTTYARSFNVAPAQVTKD 427 D+Y T + F + P + K+ Sbjct: 417 DIYCVTAGKMFGMDPDDIKKE 437 >gi|256394812|ref|YP_003116376.1| DNA polymerase I [Catenulispora acidiphila DSM 44928] gi|256361038|gb|ACU74535.1| DNA polymerase I [Catenulispora acidiphila DSM 44928] Length = 905 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 100/667 (14%), Positives = 186/667 (27%), Gaps = 143/667 (21%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKACFNL 86 V AF D D + L L + + H++ L Sbjct: 356 GDVSGLAFATADGTAAYVDATQLDPADETALAAWLADPARQKILHDAKGPSLALA-ARGF 414 Query: 87 DIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 + T + A L+ + E G+ L Sbjct: 415 TLAGVA-ADTALEAYLAQSGRRSFDLEPLAEE--------VLGRRLSPAGADENQGTLFA 465 Query: 144 DRNKPNHREAWRLFGEYCKGD-VTVTR-EIFKRLEPLS--SKEQELWYLDQTINDRGYCV 199 D + ++ + D R ++ + E L + + G + Sbjct: 466 DED---AEAERQMAAAHAVLDLADALRGKLAETGAEQLLTDIELPLVGVLAEMEQVGIAI 522 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-- 257 D L L + E K + + ++L+ LF G+ +T Sbjct: 523 DERLFQDLEKGFSGEAAKEVDAARAEAGVETLNLGSPKQLQEVLFENLGMPKTKKIKTGY 582 Query: 258 -TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 T L+ + P + +R + L ++++ D R+ T + A+ Sbjct: 583 TTDADSLAWLQAQTQHPFLDHLLR-WREVNRLK-TVVEGLSKSVSPDTRIHTTYNQMIAA 640 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374 TGR S QN+P + +R IA G Sbjct: 641 -TGRLSSVDPNLQNIPIRTLEG-------------------------QQIRKAFIAGPGY 674 Query: 375 K-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 + L+ AD + IE R++A ++ + ++AF +GEDL+ T A+ F+V V + R K Sbjct: 675 ESLMTADYSQIEMRIMAHLSEDAGLIEAFTSGEDLHNTVAAKVFDVEATAVEPEHRRRIK 734 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 M L GL+ + + + Sbjct: 735 AMSYGL--------------AYGLSAFGLSQQLGIETG---------------------- 758 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 ++ + + Q+ V + ++L Q G Sbjct: 759 --------EAAKMMEDYFQRFGGVRDYLHDL---VVQARATGYTETM------------- 794 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 GR D+ ++ R +Q + DI+ Sbjct: 795 ----------FGRRRYLPDLASDN---RQRREMAERMALNAP------IQGSAADIIKVA 835 Query: 614 MMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 M+ + ++L VHDE+V E + L M S +PL Sbjct: 836 MIRVREGLREQQLKSRMLLQVHDELVLEIAPGEAPRVEELVRREMGSAAE--LRVPLDVS 893 Query: 667 GYESKRY 673 ++ + Sbjct: 894 VGMAENW 900 >gi|330843207|ref|XP_003293552.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum] gi|325076115|gb|EGC29930.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum] Length = 1334 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 104/800 (13%), Positives = 200/800 (25%), Gaps = 221/800 (27%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF-------GFDDHPVELWDCV---HDP 51 D ET IDL K +I F+ FD + D + + Sbjct: 624 KYHACDTETI-AIDLKKVSP---IGHGRMICFSIYCGPDVKFFDGNTRLWVDVMDDINGE 679 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL------ 105 + Q KE E+ + V HN F+R + N+++ TL +AR Sbjct: 680 AVLQEFKEYFEDESILKVWHNYAFDRHIFYNH-NINVKGFG-GDTLHMARLWNAARQNSG 737 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE--------AWRLF 157 +L+A+ L ++ K+L K + + + Sbjct: 738 GYSLEALCREL--LNKTKTPIKDL--FGQKKIKANGEAGKAITIPPLQRIQRDRRSILDW 793 Query: 158 GEYCKGDVTVTREIFKRLEPLSS----------------KEQELWYLDQTINDRGYCVDV 201 EY D +T + + L + +L + RG +D+ Sbjct: 794 IEYSSLDSELTWSLRENLHMKLEDMVWTQNSTMWDFYYLNWRPFGHLLTEMEQRGMKIDI 853 Query: 202 ALAHTLNQIVDVERTKLDQEL-----ESLTYGLVSSSRCLEKLKTWLF------------ 244 L + + + + +++ LF Sbjct: 854 DYLKNLESTAFKDMEENRNRFISWASKHSEGAKYMNPDSDAQIQQLLFAPVTNKKTKEEM 913 Query: 245 --------------LETGLHLEDLT--------------------ETTCQRVLSSNKKLT 270 +E G + L + Sbjct: 914 PKSKDFETENVEGIIEEGRTKPKKNMSFILDGLGFPSNSVTTSGWPSVDASALRELAGKS 973 Query: 271 PQAIQVFNNRM-------------RASR-----------------SAVLKLNTLVEAMNS 300 P+ + + + L + + Sbjct: 974 PENGKFGTAYQFFVDKSENKEEGEALGKEACLAIASLLELGTIGTLLNTFIIPLQKLADK 1033 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 + RL ++ + TGR S QN P L+ Sbjct: 1034 NSRLHTSVNVN--TETGRLSSRKPNLQNQP-------------------------ALEKD 1066 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R G L+VAD +E R+LA + + + AF+ G D + T Sbjct: 1067 RYKIRKAFTCEPGNTLIVADYGQLELRLLAHITNCKSMISAFKVGGDFHSRTAMGM---- 1122 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 + E+ L + G L ++ N Sbjct: 1123 ----YPHVKEAVDKGEVLLEWD-------------GDGEPPKPLLKNIFASERRKAKTLN 1165 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 F + + + + W + V + Sbjct: 1166 FSIAYGKTAHGLSTDWGVTLKEAQETLNRWYEDRPEVLVWQRKTIATAHSHK-------- 1217 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 GR D+ N+ + R Sbjct: 1218 ------------------WTRTLMGRYRHLPDIDNSAKGMKNH---AERASINTPL---- 1252 Query: 601 IVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTS 653 Q + DI+ + M+ + GY +++ +HDE++ E P+ + A L +LM++ Sbjct: 1253 --QGGAADIVMKAMLIIEDNKRIKELGYKLIMQIHDELILEGPEENADEARGLVMNLMSN 1310 Query: 654 NPSWAKGLPLKAEGYESKRY 673 + + L + +K + Sbjct: 1311 PLTTPLLIDLVVDCRYAKTW 1330 >gi|90961464|ref|YP_535380.1| DNA polymerase I [Lactobacillus salivarius UCC118] gi|90820658|gb|ABD99297.1| DNA polymerase I [Lactobacillus salivarius UCC118] Length = 892 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 103/672 (15%), Positives = 215/672 (31%), Gaps = 118/672 (17%) Query: 12 SPIDLTKCGICKYAED---VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68 S D + E+ +I F+ D L D + + +K LE+ +V + Sbjct: 325 SDNDEIVFNLEIDGENYHTAEIIGFSIKIGDK--YLVSDDIDLLKKKQIKNLLESDEVEV 382 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 + + L + + L+++ +G + E E Sbjct: 383 DLFDGKRQYVGLNR-LGVTLSKIN-FDLLLVSYLLDNSENSNDLGLLAQQHEYYDVESDE 440 Query: 129 LIARFCKGETHECLYDRNKPN-HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187 I + KG H D+ H K + E ++L+ + E+ L Sbjct: 441 QI--YGKGAKHAVPEDKEVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLSI 498 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + G VD T+ + ++L+QE+ + + ++L LF + Sbjct: 499 ILANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAG-EEFNLNSPKQLGVILFEKL 557 Query: 248 GLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 L + T+ +T VL + ++P + R ++ + L++ ++ Sbjct: 558 KLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQ-LAKIQSTYIEGLLKVVSKKDGK 616 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 T + TGR S QN+P + + Sbjct: 617 AHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRK-------------------------I 651 Query: 365 RSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422 R + S G ++ +D + IE RVLA ++ ++ +AF+ G D++ +T R FNV P Sbjct: 652 RQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSPD 711 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT + R K + + Y + + ++ ++ + + +++ Sbjct: 712 EVTPNMRRQAKAVNFGIVYGIS-----DYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYM 766 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + E E+ + + Sbjct: 767 EKIVEFAKENGYVETIF-----------------------------------------NR 785 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 RR +P + + R+ +N+ + K+ + Sbjct: 786 RRYLPDIKSRNFNLRSF---------------AERTAMNSPIQG---SAADIIKVAMINM 827 Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGL 661 Q ++L E ++L VHDE++ E P + + +M S + Sbjct: 828 Q----EMLKE-----KNLQAKMLLQVHDELIFEAPTEEIPLLEDMVPKVMDSAVK--LDV 876 Query: 662 PLKAEGYESKRY 673 PLK E + + Sbjct: 877 PLKVESKHGQTW 888 >gi|229824800|ref|ZP_04450869.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC 49176] gi|229790803|gb|EEP26917.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC 49176] Length = 961 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 80/516 (15%), Positives = 156/516 (30%), Gaps = 121/516 (23%) Query: 170 EIFKRLEPLSSKEQELWYL--DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E+ KE E+ + + +RG ++ H ++ +DV ++E+ + Sbjct: 551 ELSNLGMENLYKEIEMPLVSTLYEMEERGIKLNKEELHEYSEELDVLIKNYEEEIYKMAG 610 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L LF + L T+ +T VL + P +V N R + Sbjct: 611 -EEFNINSPKQLGVILFEKLRLPYGKKTKTGYSTSADVLERIRLEDPIVERVLNYRQ-VA 668 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + + L + DGR+ L L + TGR S QN+P Sbjct: 669 KLKSTYTDGLEGYVKEDGRIHCKLNQLV-TATGRLSSTEPNLQNIPIR------------ 715 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 + +R + EG V AD + IE R++A ++G++ +KA++ Sbjct: 716 -------------MELGKRIRKAFVPKEGYVFVDADYSQIELRIMAHLSGDEELIKAYQG 762 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 ED++ T + F V +VT QR K + G++ Sbjct: 763 EEDIHRITASHVFGVPLDEVTDLQRRNAKAVNF--------------GIIYGISSFGL-- 806 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 E+ + + + +V + + L Sbjct: 807 ----------------------------GENLGISRKDAEKYINDYFKAYPQVKKYLDSL 838 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 + + + GR ++ +N Sbjct: 839 VETGIE--------------------------KGFVKTYFGRIRPIPELNSNNFMKRQF- 871 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPD 638 R VQ + DI+ M + ++L +HDE++ E + Sbjct: 872 --GERIAMNSP------VQGTAADIIKIAMNSVNARLKSEFPDSRLLLQIHDELLIEAKE 923 Query: 639 TDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 D+ + L M + L + + Sbjct: 924 EDKEAVAKLLKEEMMKAAE--LKVKLSVDVKFGYNW 957 >gi|322377942|ref|ZP_08052430.1| DNA polymerase I [Streptococcus sp. M334] gi|321281118|gb|EFX58130.1| DNA polymerase I [Streptococcus sp. M334] Length = 889 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 102/670 (15%), Positives = 196/670 (29%), Gaps = 152/670 (22%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKA 82 ++ FA+ D + Q K+ LE T + + ++ VL Sbjct: 344 ADLVGFAWSCGDK----LYATDKLELLQEPIFKDFLEKTPLRV------YDFKKAKVLLH 393 Query: 83 CFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGE 137 F LD+ + + + + ++ L + GK + + E Sbjct: 394 RFGLDLQ-APAFDSRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFYGKGVKKALPERE 452 Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197 R E + E + + ++ EQ L ++ + G Sbjct: 453 KFLEHLARKLAVLVETEPILLEKLSENGQLEL-LY-------DMEQPLAFVLAKMEIAGI 504 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLT 255 V + ++ KL QE+ L + ++L LF + GL L T Sbjct: 505 TVKKETLLEMQAENELVIEKLTQEIYELAG-EEFNINSPKQLGVLLFEKLGLPLEYTKKT 563 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 564 KTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD- 621 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P +R + Sbjct: 622 LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEW 656 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRR 716 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + G++ ++ Sbjct: 717 NAKAVNF--------------GVVYGISDFGLSN-------------------------- 736 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + + ++ + +E+ + Sbjct: 737 ----NLGISRKEAKSYIDTYFERFPGIKNYMDEVVREARD-------------------- 772 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + R D+ + R +Q + DIL Sbjct: 773 ------KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADIL 817 Query: 611 AEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPL 663 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 818 KIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQ--LSVPL 875 Query: 664 KAEGYESKRY 673 A+ E + Sbjct: 876 IADENEGATW 885 >gi|225855819|ref|YP_002737330.1| DNA polymerase I [Streptococcus pneumoniae P1031] gi|225725792|gb|ACO21644.1| DNA polymerase I (POL I) [Streptococcus pneumoniae P1031] Length = 877 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYMQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + L Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|300214316|gb|ADJ78732.1| DNA polymerase I [Lactobacillus salivarius CECT 5713] Length = 892 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 103/672 (15%), Positives = 215/672 (31%), Gaps = 118/672 (17%) Query: 12 SPIDLTKCGICKYAED---VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68 S D + E+ +I F+ D L D + + +K LE+ +V + Sbjct: 325 SDNDEIVFNLEIDGENYHTAEIIGFSIKIGDK--YLVSDDIDLLKKKQIKNLLESDEVEV 382 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 + + L + + L+++ +G + E E Sbjct: 383 DLFDGKRQYVGLNR-LGVTLSKIN-FDLLLVSYLLDNSENSNDLGLLAQQHEYYDVESDE 440 Query: 129 LIARFCKGETHECLYDRNKPN-HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187 I + KG H D+ H K + E ++L+ + E+ L Sbjct: 441 QI--YGKGAKHAVPKDKEVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLSI 498 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + G VD T+ + ++L+QE+ + + ++L LF + Sbjct: 499 VLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAG-EEFNLNSPKQLGVILFEKL 557 Query: 248 GLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 L + T+ +T VL + ++P + R ++ + L++ ++ Sbjct: 558 KLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQ-LAKIQSTYIEGLLKVVSKKDGK 616 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 T + TGR S QN+P + + Sbjct: 617 AHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRK-------------------------I 651 Query: 365 RSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422 R + S G ++ +D + IE RVLA ++ ++ +AF+ G D++ +T R FNV P Sbjct: 652 RQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSPD 711 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT + R K + + Y + + ++ ++ + + +++ Sbjct: 712 EVTPNMRRQAKAVNFGIVYGIS-----DYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYM 766 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + E E+ + + Sbjct: 767 EKIVEFAKENGYVETIF-----------------------------------------NR 785 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 RR +P + + R+ +N+ + K+ + Sbjct: 786 RRYLPDIKSRNFNLRSF---------------AERTAMNSPIQG---SAADIIKVAMINM 827 Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGL 661 Q ++L E ++L VHDE++ E P + + +M S + Sbjct: 828 Q----EMLKE-----KNLQAKMLLQVHDELIFEAPTKEIPLLEDMVPKVMDSAVK--LDV 876 Query: 662 PLKAEGYESKRY 673 PLK E + + Sbjct: 877 PLKVESKHGQTW 888 >gi|251783393|ref|YP_002997698.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392025|dbj|BAH82484.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 880 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 90/667 (13%), Positives = 185/667 (27%), Gaps = 155/667 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89 F + + + K+ E + ++ VL + +++ Sbjct: 339 IGFAWGHGEQIYASTDLSLLSTDLFKKVFEKPI-------ATYDFKRSKVLLSHLGIEL- 390 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + + + ++ L K Sbjct: 391 VAPSYDARLANYLLS------------NVEDNELTTIARLFTDISLEADDSIYGKGVKRA 438 Query: 150 HREAWRLFGEYCKG-----DVTVT----REIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 E L G + D +++ E L + + G V+ Sbjct: 439 VPEKEVLLGHLARKVKVLLDSRAPMVEKLADHDQIDLYHEIELPLANVLAKMEIEGIKVN 498 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE-- 256 A + + V L QE+ + + ++L + LF + L + T+ Sbjct: 499 RATLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTG 557 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + P ++ + R ++ + L + + +DG++ ++ Sbjct: 558 YSTAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQ 615 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374 TGR S QN+P +R S E Sbjct: 616 TGRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDA 650 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGK 433 L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R K Sbjct: 651 VLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAK 710 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + G++ ++ Sbjct: 711 AVNFGIV--------------YGISDFGLSN----------------------------- 727 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + + +++ + + + + Sbjct: 728 -NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKD----------------------- 763 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + R D+ + R +Q + DIL Sbjct: 764 ---KGYVETLFKRRRELPDINSRNF---NVRSFAERTAINSP------IQGSAADILKIA 811 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666 M+N A ++L VHDEIV E P+ + L M + A +PL+A+ Sbjct: 812 MINLDNALQAGGFKAKMLLQVHDEIVLEVPNDELTAIKKLVKDTMEAAVDLA--VPLRAD 869 Query: 667 GYESKRY 673 + + Sbjct: 870 ENAGQSW 876 >gi|269795325|ref|YP_003314780.1| DNA polymerase I [Sanguibacter keddieii DSM 10542] gi|269097510|gb|ACZ21946.1| DNA polymerase I [Sanguibacter keddieii DSM 10542] Length = 901 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 100/665 (15%), Positives = 175/665 (26%), Gaps = 138/665 (20%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKACFNL 86 A D L + L + V H L + Sbjct: 351 GDAWALAIADGPGSAVALDLTDLSAADDTALSDWLSDPTRAKVVHGGKSVWHELASR-GY 409 Query: 87 DIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQK--MEEGKELIARFCKGETHEC 141 + T + A L + E + GE E Sbjct: 410 SLE-GVVFDTELAAYLCFPDQRSYDLGDLAERHLHRELTPVDTSSDQGALDLSVGEDSEG 468 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 + GD L+ E L + + G +DV Sbjct: 469 GRLAVRAAALTDLAEVLRGELGD-------RSAEPLLTELELPLSAVLVHMERHGIAMDV 521 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---T 258 L Q T + V + ++L+ LF + + +T T Sbjct: 522 DYLRELEQHFGELVTGAAASAYEVIGREV-NLGSPKQLQEVLFDQLDMPKTKKIKTGYTT 580 Query: 259 CQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 L+ K P + ++R + L++++ DGR+ T Q A+ T Sbjct: 581 DAAALADLFVKTEHPFLKFLLDHRDSTRLRQT--VEGLLKSVADDGRIHTTFQQTIAA-T 637 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-K 375 GR S QN+P + + +R + +G Sbjct: 638 GRLSSTEPNLQNIPIRTEAGRR-------------------------IRRAFVVGDGYET 672 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ AD + IE R++A ++G++ ++AF TGEDL+ +R F V + VT R+ K M Sbjct: 673 LLTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVGSRVFQVETSAVTPAMRSKIKAM 732 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 L Y + LN++ Sbjct: 733 SYGLAYG-----LSSFGLSNQLNID----------------------------------- 752 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 ++ + + + V + Sbjct: 753 ----VKEASKLMEDYFTRFGGVRTYLAGVVDEAR-------------------------- 782 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 N GR D+ ++ R +Q + DI+ M+ Sbjct: 783 ANGYTATIMGRRRYLPDLTSDN---RQRREMAERMALNAP------IQGSAADIIKVAML 833 Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 K ++L VHDE++ E + + L M S +PL Sbjct: 834 GVEKEIAVRGLRSRLLLQVHDELILEVGHGELEELTTLVREQMGSAADLL--VPLDVSVG 891 Query: 669 ESKRY 673 + Sbjct: 892 TGSSW 896 >gi|157826228|ref|YP_001493948.1| DNA polymerase I [Rickettsia akari str. Hartford] gi|157800186|gb|ABV75440.1| DNA polymerase I [Rickettsia akari str. Hartford] Length = 872 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 88/632 (13%), Positives = 189/632 (29%), Gaps = 149/632 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++ L + + + ++ +LK N I ++ + + K Sbjct: 375 DIIFNLLADKSIKKITYSLK---PLLKFYANQSHKITAIEDLELMQYALSAGLSQK---- 427 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L + ++E +I K + + + + F Y D Sbjct: 428 --NLFEEALKE-DNIINESAKIVANFISLYKQTILALKDNKAFRLYSDID---------- 474 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + ++ + G VD + L+ E + L++E+ +L+ + Sbjct: 475 --------LPICFILDKMEKTGIKVDANYLNQLSAEFGAEISILEEEIFALSGTK-FNIG 525 Query: 235 CLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L +T +L + + + ++ Sbjct: 526 SPKQLGKILFEKMQLPFGKAAAKAISYSTAAEILEKLSEHGYNIADLLLRWRQLTKFKNT 585 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 ++L + +++ R T ++ TGR S QN+P SR + Sbjct: 586 YTDSLPKQIDNITRRVHTTFLQTSTTTGRLSSQEPNLQNIPIRSREGNK----------- 634 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R IA EG KL+ AD + IE R+L+ +A +AF +D++ Sbjct: 635 --------------IRQAFIAEEGYKLISADYSQIELRILSHIANIDTLKQAFINKDDIH 680 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + FN+ ++T + R K + G++ Sbjct: 681 TQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS----------- 715 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A + + K + ++ V E + Sbjct: 716 -------------------AFGLAKQLNVSNSEASEYIKKYFAEYKGVQEYMEQTKAFA- 755 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 +N ++ GR + + + + R Sbjct: 756 -------------------------SSNGYVINFFGRKCFIPLIHDKK-----LKQFAER 785 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643 +Q + DI+ M+N K +VL +HDE++ E P+ + Sbjct: 786 AAINAP------IQGTNADIIKIAMINLDQEIAKNKLKTRLVLQIHDELLFEVPEDEVEL 839 Query: 644 A-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++ +M + S +P+ E + Sbjct: 840 VTPIIKKIMEN--STNMDVPIITEIRAGNNWM 869 >gi|118617251|ref|YP_905583.1| DNA polymerase I [Mycobacterium ulcerans Agy99] gi|118569361|gb|ABL04112.1| DNA polymerase I PolA [Mycobacterium ulcerans Agy99] Length = 899 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 98/655 (14%), Positives = 191/655 (29%), Gaps = 139/655 (21%) Query: 39 DHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97 D D P L E L + H + L + T Sbjct: 359 DGEGGYIDTATLTPDDDAALGEWLADPAKPKALHEAKLAIHDL-RGRGWTLN-GVTSDTA 416 Query: 98 VLARSNGLPS---ALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 + A L + +L ++ E+ + + + + Sbjct: 417 LAAYLVRPGQRSFTLDDLSLRYLRRELRAETPEQQQLSLLDDDDTDVAAAQTAILRARAV 476 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 + + T + + E + +L + G VD+ + L + Sbjct: 477 IDLADALDAELDRIDSTGLL-------TDMELPVQHLLAEMETAGIAVDLTMLGGLQRHF 529 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKK 268 + + ++ + + ++L+ LF E + T+T T L S Sbjct: 530 ADQIRDAAEAAYAVIGKQI-NLGSPKQLQVVLFDELRMPKTKRTKTGYTTDADALQSLFD 588 Query: 269 L--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 P + +R +R V ++ L+ ++ DGR+ T A+ TGR S Sbjct: 589 KTGHPFLQHLLAHR-DVTRLKVT-VDGLLNSVADDGRIHTTFNQTIAA-TGRLSSTEPNL 645 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIE 385 QN+P + + +R + +G +L+ AD + IE Sbjct: 646 QNIPIRTDAGR-------------------------QIRDAFVVGDGYSELMTADYSQIE 680 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R++A ++ ++ ++AF TGEDL+ +R+F V +VT + R K M L Sbjct: 681 MRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL------ 734 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 GL+ + + + Sbjct: 735 --------AYGLS------------------------------AYGLSSQLKISTEDAKV 756 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + + V + L EQ ++G G Sbjct: 757 QMDQYFSRFGGVRDY---LMAVVEQARKDGYTSTVL-----------------------G 790 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620 R ++ ++ R +Q + DI+ M+ KA Sbjct: 791 RRRHLPELDSSN---RQVREAAERAALNAP------IQGSAADIIKVAMIEVDKALKEHA 841 Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + L M S + +PL+ + + Sbjct: 842 LKSRMLLQVHDELLFEVAAGEREQIEALVRDKMGSA--YPLDVPLEVSVGFGRSW 894 >gi|89898685|ref|YP_515795.1| DNA polymerase I [Chlamydophila felis Fe/C-56] gi|89332057|dbj|BAE81650.1| DNA polymerase I [Chlamydophila felis Fe/C-56] Length = 869 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 101/658 (15%), Positives = 195/658 (29%), Gaps = 133/658 (20%) Query: 30 VILFAFGFDDHPVELWDCVHD-PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 ++ A DD V D + + + LK+ D +N + LK + + Sbjct: 328 LMGVALACDDS-VYYVDVENATDDVIKPLKDFFGRKDTEFYGYNIKRDSHALKNA-GIHV 385 Query: 89 PIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + + + + + L L S GKE + + Sbjct: 386 NNIAL-DLALAEHLINGGAKISYQTLLADLGLVSSAGRYGKEWGQLSLPIQKSPPNPAQY 444 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALA 204 E E+ + E+ + TI G +DV Sbjct: 445 FGEFVSHLPTIKETLLK------ELKSKNIEDIFFNMEMPLEKVLFTIERNGMPLDVEDL 498 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264 L +I+ E L ++ +L + + ++L L+ + GL D +T VL Sbjct: 499 QNLEKILSEELAILADDIYALAGSP-FNIKSPKQLAEVLYNKLGLTPVDKARSTKAEVLE 557 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCV 323 + ++ R + + L + ++ R+ T +G + TGR + Sbjct: 558 AMTGEHDVIEKILAFR-SVEKLLSTYVRALPKQVDPCTFRIHPTFNQMG-TVTGRLACQD 615 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI-ASEGKKLVVADLA 382 QN+P S +R + + AD + Sbjct: 616 PNLQNIPIRSERGR-------------------------LLRKAFCDTHQNTYFLSADYS 650 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R LA ++ ++ AFE+ ED++ T ++ F+V +VTK QR K + Sbjct: 651 QIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEKVTKQQRMQAKTVN------ 704 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 G + + + Sbjct: 705 --------FGIIYG------------------------------QQAYGLSKILKISVSE 726 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 +++ A+ ++ V+ NE + NL + Sbjct: 727 AQKLIDAYFDRYPDVARFINETVSQACE--------------------------NLRVKT 760 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----- 617 GR R N T +R + G +Q + +++ M+ Sbjct: 761 LLGR---------ERIIDNWTEFSNSRAAS-GRLAVNTRIQGSAAELIKLAMLQLSDALE 810 Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 K ++L +HDE++ E P+ ++ L +M S +PL K + Sbjct: 811 KRKLRSRMLLQIHDELIFEVPEEEKEEMQTLVRDIMESAM--ILSVPLVVNILIGKNW 866 >gi|148987751|ref|ZP_01819214.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73] gi|147926215|gb|EDK77288.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73] gi|301793347|emb|CBW35710.1| DNA polymerase I [Streptococcus pneumoniae INV104] gi|332204058|gb|EGJ18123.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47901] Length = 877 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIV 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYMQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + L Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|330444148|ref|YP_004377134.1| DNA polymerase I [Chlamydophila pecorum E58] gi|328807258|gb|AEB41431.1| DNA polymerase I [Chlamydophila pecorum E58] Length = 878 Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 89/661 (13%), Positives = 202/661 (30%), Gaps = 143/661 (21%) Query: 32 LFAFGFDDHPVELWDCVHD-PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 A D + V + + ++L + D++ +N + L+ + I Sbjct: 339 GIALS-DGNRVVYVELKQRPEELLEILCKFFSREDLSFYGYNIKRDLHALRNA-GIVIYN 396 Query: 91 HRWICTLVLARSNGLPS---------ALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 + + + A + + L+ E + Sbjct: 397 VSC-DLALAEHLIHGGARTSFQSLLVSHGWAAVAARYVKEWGHHALPLVQLPENPEKYFG 455 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 P +E+ + + + + E L ++ ++ G +D Sbjct: 456 ELVALLPQIKESLLE-----------ELQKKQLTDVFFNLEMPLEHVLFSMERNGMPLDS 504 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261 +L ++ + L +E+ +L + + ++L L+ + G+ D ++T Sbjct: 505 KKLVSLEHSLEQDLAILTEEIYTLAG-EPFNIKSPKQLANILYNKLGITPLDKAKSTRAE 563 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWS 320 VL + ++ ++ R + + L + R+ T + +G + TGR + Sbjct: 564 VLEALREEHKIIEKLLMFR-ALEKLLSTYVKALPRQVAPQTQRIHATFEQMG-TATGRLA 621 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV-IASEGKKLVVA 379 QN+P+ S +R + E + A Sbjct: 622 CRDPNLQNIPKRSSRGL-------------------------SLREAFLVPCETVSFLAA 656 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R+LA ++ ++ L AF GED++ T ++ F+V QVTK QR K Sbjct: 657 DYSQIELRLLAHLSQDEVLLHAFHQGEDIHAFTASQVFSVPLDQVTKQQRMYAKT----- 711 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 G + + Sbjct: 712 ---------VNFGIIYG------------------------------QQAYGLSKILKIP 732 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + + +A+ +++S V+ + + + K R V + + Sbjct: 733 LSEAQELIQAYFERYSGVARF---VEETIAAASHDLKVTTMLGRERVIDNWDEHPG---- 785 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + SGR +Q + +++ M+ +K Sbjct: 786 IRASSGR-----------------------------LAVNTRIQGSAAELIKCAMLEISK 816 Query: 620 A------GYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672 ++L +HDE++ E PD + + +++ M + + +PL K Sbjct: 817 EIQDRKLQSRMLLQIHDELIFEVPDGEMQEMCALVQEKMEAAMT--LTVPLVVNILIGKN 874 Query: 673 Y 673 + Sbjct: 875 W 875 >gi|149010895|ref|ZP_01832200.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75] gi|221230982|ref|YP_002510134.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669] gi|147764531|gb|EDK71461.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75] gi|220673442|emb|CAR67908.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669] Length = 877 Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCGDQ----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLSQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYLQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + L Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|23752370|ref|NP_705685.1| gp62 [Burkholderia phage Bcep781] gi|23507237|gb|AAN38060.1| gp62 [Burkholderia phage Bcep781] Length = 655 Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 172/703 (24%), Positives = 277/703 (39%), Gaps = 85/703 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60 LF+DFE S DLT+ G+ +Y +D + F F +LW+ +P+ + Sbjct: 6 LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMSTADLWEV--GQPVPKQIVGH 63 Query: 61 LENTDVTIVAHNSYFER----TVLKACFNL----DIPIHRWICTLVLARSNGLPSALKAV 112 L VAHN+ F+ VL+ +I I + C+ AR NGLP +L Sbjct: 64 LN--GSPFVAHNAPFDFWIWNLVLRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGA 121 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 EAL L QK EG + + D +H E + +Y D ++ Sbjct: 122 CEALGLPVQKDTEGAKWMKEIAANP------DWTPADHPEHFARTYKYALIDTDAMVGVW 175 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + PL + Q + +D IN RG DV A + + +LD E+ LT G + + Sbjct: 176 ENTVPLPPRMQAEFEMDMRINHRGIGTDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 235 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + K+K + G ++D T +++ ++ L Q+ R+ ASR+ K + Sbjct: 236 VTEVAKIKEYA-ATLGEDMDDAGRETLKKI-AARDNLPDSLRQLIELRLDASRAP--KKS 291 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL----PRPSRSHEELDQIITHLPT 348 + + GRL+ + GA + Q L PRP + + + I+ Sbjct: 292 AAILRAHVGGRLQHHTIYHGALSGRSTARGAGGAQTLNTARPRPGKKTADCEAILDACLR 351 Query: 349 SITSD------PDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + L ++D R A G LV ADL+GIEARV W+A + KL+A Sbjct: 352 GDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARVAPWLANDVPKLEA 411 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE G D Y +++ VTKDQR +GK +LALG+ GG AF MA+ G++L Sbjct: 412 FEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGGDGAFASMAANYGVHLPP 471 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + WR W Sbjct: 472 EQVS---------------------------------------EIVYNWRAGRPAFERWW 492 Query: 522 NELHQAFEQTIE--NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG----- 574 + + ++ + ++ R + + KD L + LPSGR++ Y + Sbjct: 493 SLCEYSVLMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLHLEP 552 Query: 575 NNRSYLNTTTRQLTREYTYGGKLT-ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + + T K+ N Q ++RD+ +++ + +IV V+DE + Sbjct: 553 GANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRVE-EIVHHVYDEAL 611 Query: 634 CET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + L M +W GLPL AEG+ R+RK Sbjct: 612 LEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654 >gi|308234078|ref|ZP_07664815.1| DNA polymerase I [Atopobium vaginae DSM 15829] gi|328943901|ref|ZP_08241366.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829] gi|327491870|gb|EGF23644.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829] Length = 1030 Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 94/610 (15%), Positives = 168/610 (27%), Gaps = 155/610 (25%) Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 DI + A + + L Sbjct: 549 DISTAALFDVGLAAYLLNSDAN----------------------DYSWQTLCSAYLPTFV 586 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRG 196 P+ + EY R ++ L L E L + + G Sbjct: 587 YPDTTDDTDEPNEYALE-AIAVRALYPVLRELLHTDGSDDLFYELELPLIPVLLHMERNG 645 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 D L ++ + E + EL L + +L LF GL + L + Sbjct: 646 IYCDKHLLAEQSRALSHELNAMSLELRRL-AQQDFNIDSPMQLSHVLFDVWGLPTKGLKK 704 Query: 257 ------TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 +T + L+S + + + R R + L+ LV + SDGR+ T Sbjct: 705 TRRGYYSTNAQTLASLSMADERVQLILDYRERM-KIKNTYLDALVHDIRSDGRIHSTFNQ 763 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 A+ TGR S QN+P S + VR + Sbjct: 764 TIAA-TGRLSSSDPNLQNIPTRS-------------------------SLGHRVRKAFVL 797 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 + D + IE R+LA ++ ++ + AF+TG D + T AR F+V+P +VT R+ Sbjct: 798 PRNHLFLACDYSQIELRLLAHLSQDEHLIHAFQTGADFHAATAARIFHVSPDEVTPALRS 857 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + F + Sbjct: 858 RAKAVN--------------------------------------------FGIVYGQQAF 873 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 A + + + + + V + +E Q + Sbjct: 874 GLATSLKISRKEAQEMIDRYFEAYPGVRKFLDESVQFARE-------------------- 913 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + + GR + + R +Q + DI+ Sbjct: 914 ------HSYVPTMYGRKRHIAQIDSRNF---QLRSFAERTAMNHP------MQGSAADII 958 Query: 611 AEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPL 663 M+ K ++L +HDE+ E + S++ M + +PL Sbjct: 959 KLAMIEVEKQFAQLGLASKLILQIHDELDFEVVPEELERVSSVVKRAMEGVVT--LRVPL 1016 Query: 664 KAEGYESKRY 673 AE + + Sbjct: 1017 IAEISYADNW 1026 >gi|189183413|ref|YP_001937198.1| DNA polymerase I [Orientia tsutsugamushi str. Ikeda] gi|189180184|dbj|BAG39964.1| DNA polymerase I (POL I) [Orientia tsutsugamushi str. Ikeda] Length = 889 Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 104/674 (15%), Positives = 202/674 (29%), Gaps = 155/674 (22%) Query: 26 EDVCVILFAFGFDDHPVELWDCVH---------DPVMPQV---LKEALENTDVTIVAHNS 73 E I F D H + D P + E L ++ + + +N Sbjct: 339 EKNDYISITFSLDLHKLYFIDLTAITSKEQNYATETNPWWKSSIIELLLDSSIQKITYNL 398 Query: 74 YFERTVLKACFNLDIPIHR-WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132 L +I +++ L L+ K + Sbjct: 399 KELLIFLLNFLRTEITSASCIDDIMLMHYILSAGKN------ELSLNEIIQTYNK---SY 449 Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192 + H+ + +N LF K L + + Y+ + I Sbjct: 450 SEQYSEHKVCWLKN-TFDNLMSELFKN-------------KLLHCYYEIDLPICYILRNI 495 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 + G ++V L L+ + + L+Q + + + ++L LF L Sbjct: 496 ENNGIKINVPLLKDLSAQLKHKIDLLEQHIYQICGQ-EFNIASPKQLGEILFDVLKLPHA 554 Query: 253 D---LTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 T++ T VL + + + + + ++ ++TL +N++ T Sbjct: 555 KVSQKTKSYSTDSEVLENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRVHT 614 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 ++ T R S QN+P S + VRS Sbjct: 615 TLLQTSTTTSRLSSHSPNLQNIPIRSEYGLK-------------------------VRSA 649 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 +A G K++ AD + IE R+L++ A + F GED++ +T A+ F + QVT++ Sbjct: 650 FVAPPGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQVTEE 709 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K + G++ Sbjct: 710 NRRKAKAINF--------------GIIYGIS----------------------------- 726 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 A + T + + Q++ + + +E + + Sbjct: 727 -AFGLAKQLNISNTEAAQYINHYFQEYPAIRQYMHETKKFAVE----------------- 768 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + + GR + ++ TT R +Q+ + Sbjct: 769 ---------HGYVKNMIGRRCYIPLINSSNL---TTRNFAQRAAINAP------IQSTAS 810 Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKG 660 DI M+ K Y ++L VHDE+V E P+ A +++ M + P + Sbjct: 811 DIAKIAMIQYEKLIYSKYPAIKLLLQVHDELVFELPEELVDTACNLIKSTMENIPYF--S 868 Query: 661 LPLKAEGYESKRYR 674 PLK E + Sbjct: 869 FPLKVELKIGDNWG 882 >gi|15902076|ref|NP_357626.1| DNA polymerase I [Streptococcus pneumoniae R6] gi|116516654|ref|YP_815461.1| DNA polymerase I [Streptococcus pneumoniae D39] gi|27735185|sp|P59200|DPO1_STRR6 RecName: Full=DNA polymerase I; Short=POL I gi|15457562|gb|AAK98836.1| DNA polymerase I [Streptococcus pneumoniae R6] gi|116077230|gb|ABJ54950.1| DNA polymerase I [Streptococcus pneumoniae D39] Length = 877 Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCGDQ----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIV 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + L Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|307704639|ref|ZP_07641540.1| DNA polymerase I [Streptococcus mitis SK597] gi|307621792|gb|EFO00828.1| DNA polymerase I [Streptococcus mitis SK597] Length = 877 Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 98/667 (14%), Positives = 196/667 (29%), Gaps = 148/667 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFN 85 ++ FA+ D +L+ ++ + + +A V ++ VL Sbjct: 333 DLVGFAWSCGD---KLYATDKLELLQEPIFKAFLEKTPLRV-----YDFKKAKVLLHRLG 384 Query: 86 LDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 +D+ + + + + ++ L + GK + + E Sbjct: 385 VDLQ-APAFDSRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFYGKGVKKALPEREKFL 443 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 R E + E + + ++ EQ L ++ + G V Sbjct: 444 EHLARKLSVLVETEPVLLEKLSENGQLEL-LY-------DMEQPLAFVLAKMEIAGITVK 495 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256 + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 496 KETLLEMQTENELVIEKLTQEIYELAG-EEFNINSPKQLGVLLFEKLGLPLEYTKKTKTG 554 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + P ++ + R ++ + L + + +DG++ ++ Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-LTQ 612 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374 TGR S QN+P +R + E Sbjct: 613 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWEDS 647 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGK 433 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K Sbjct: 648 VLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAK 707 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + G++ ++ Sbjct: 708 AVNF--------------GVVYGISDFGLSN----------------------------- 724 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + + ++ + +E+ + Sbjct: 725 -NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD----------------------- 760 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + R D+ + R +Q + DIL Sbjct: 761 ---KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILKIA 808 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 M+ KA ++L VHDEIV E P ++ L M +PL A+ Sbjct: 809 MIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQ--LSVPLIAD 866 Query: 667 GYESKRY 673 E + Sbjct: 867 ENEGATW 873 >gi|149023472|ref|ZP_01836061.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72] gi|147929795|gb|EDK80785.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72] Length = 877 Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + L Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEIKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|467163|gb|AAA50927.1| polI [Mycobacterium leprae] Length = 907 Score = 276 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 91/657 (13%), Positives = 181/657 (27%), Gaps = 137/657 (20%) Query: 39 DHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CT 96 D D P L L + D H + L + T Sbjct: 363 DGNGGYIDTAMLTPDDDDALAAWLADPDNPKALHEAKLAMHDLA---GRGWTLGGITSDT 419 Query: 97 LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 + A L + ++ + + D+ Sbjct: 420 ALAAYLVRPGQRSFTLDDLSLRY---LRRELRAETPEQEQFSLLDNVDEVDKQAIQTLIL 476 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 + ++ L E + + + G D+ L L Sbjct: 477 RARAVVDLAAALDAELDLIDSTSLLGEMELPVQQVLADMEKAGIAADLRLLTELQSQFGD 536 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN--KK 268 + + ++ + + ++L+ LF E G+ T+T T L S K Sbjct: 537 QIRDAAEAAYAVIGKQI-NLSSPKQLQVVLFEELGMPKTKRTKTGYTTDADALQSLFCKT 595 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 P + +R +R V ++ L+ A+ +DGR+ T A+ TGR S QN Sbjct: 596 EHPFLQHLLTHR-DVTRLKVT-VDGLLNAVAADGRIHTTFNQTIAT-TGRLSSTEPNLQN 652 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS---EGKK-LVVADLAGI 384 +P + + +R + G L+ AD + I Sbjct: 653 IPIRTNAGR-------------------------QIRDAFVVGSENNGYTELMTADYSQI 687 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ ++ ++AF TGEDL+ +R+F + +T + R K M Sbjct: 688 EMRIMAHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAMSY------- 740 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 GL+ A + + Sbjct: 741 -------GLAYGLS------------------------------AYGLATQLKISTEEAK 763 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + + + V + ++ + + + Sbjct: 764 LQMEQYFARFGGVRDYLMDVVEQARK--------------------------DGYTSTVL 797 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------ 618 GR ++ ++ R +Q + DI+ M+ Sbjct: 798 GRRRYLPELDSSN---RQIREAAERAALNAP------IQGSAADIIKVAMIAVDKSLKQA 848 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674 K ++L VHDE++ E + + M S + +PL+ + + Sbjct: 849 KLASRMLLQVHDELLFEVAIGEREQIEAMVREQMGSA--YPLDVPLEVSVGFGRSWG 903 >gi|225857894|ref|YP_002739404.1| DNA polymerase I [Streptococcus pneumoniae 70585] gi|225720032|gb|ACO15886.1| DNA polymerase I (POL I) [Streptococcus pneumoniae 70585] Length = 877 Score = 276 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + L Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEIKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|169833568|ref|YP_001693553.1| DNA polymerase I [Streptococcus pneumoniae Hungary19A-6] gi|168996070|gb|ACA36682.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Hungary19A-6] Length = 877 Score = 276 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 98/669 (14%), Positives = 186/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ +D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCEDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + L Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 761 -----KSYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|237649916|ref|ZP_04524168.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974] gi|237822599|ref|ZP_04598444.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974M2] Length = 877 Score = 276 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLSFVLAKMEIAGIV 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + L Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|15827719|ref|NP_301982.1| DNA polymerase I [Mycobacterium leprae TN] gi|221230196|ref|YP_002503612.1| DNA polymerase I [Mycobacterium leprae Br4923] gi|1169403|sp|P46835|DPO1_MYCLE RecName: Full=DNA polymerase I; Short=POL I gi|559913|emb|CAA86364.1| DNA polymerase I [Mycobacterium leprae] gi|13093270|emb|CAC31762.1| DNA polymerase I [Mycobacterium leprae] gi|219933303|emb|CAR71476.1| DNA polymerase I [Mycobacterium leprae Br4923] Length = 911 Score = 276 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 91/657 (13%), Positives = 181/657 (27%), Gaps = 137/657 (20%) Query: 39 DHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CT 96 D D P L L + D H + L + T Sbjct: 367 DGNGGYIDTAMLTPDDDDALAAWLADPDNPKALHEAKLAMHDLA---GRGWTLGGITSDT 423 Query: 97 LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 + A L + ++ + + D+ Sbjct: 424 ALAAYLVRPGQRSFTLDDLSLRY---LRRELRAETPEQEQFSLLDNVDEVDKQAIQTLIL 480 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 + ++ L E + + + G D+ L L Sbjct: 481 RARAVVDLAAALDAELDLIDSTSLLGEMELPVQQVLADMEKAGIAADLRLLTELQSQFGD 540 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN--KK 268 + + ++ + + ++L+ LF E G+ T+T T L S K Sbjct: 541 QIRDAAEAAYAVIGKQI-NLSSPKQLQVVLFEELGMPKTKRTKTGYTTDADALQSLFCKT 599 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 P + +R +R V ++ L+ A+ +DGR+ T A+ TGR S QN Sbjct: 600 EHPFLQHLLTHR-DVTRLKVT-VDGLLNAVAADGRIHTTFNQTIAT-TGRLSSTEPNLQN 656 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS---EGKK-LVVADLAGI 384 +P + + +R + G L+ AD + I Sbjct: 657 IPIRTNAGR-------------------------QIRDAFVVGSENNGYTELMTADYSQI 691 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ ++ ++AF TGEDL+ +R+F + +T + R K M Sbjct: 692 EMRIMAHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAMSY------- 744 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 GL+ A + + Sbjct: 745 -------GLAYGLS------------------------------AYGLATQLKISTEEAK 767 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + + + V + ++ + + + Sbjct: 768 LQMEQYFARFGGVRDYLMDVVEQARK--------------------------DGYTSTVL 801 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------ 618 GR ++ ++ R +Q + DI+ M+ Sbjct: 802 GRRRYLPELDSSN---RQIREAAERAALNAP------IQGSAADIIKVAMIAVDKSLKQA 852 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674 K ++L VHDE++ E + + M S + +PL+ + + Sbjct: 853 KLASRMLLQVHDELLFEVAIGEREQIEAMVREQMGSA--YPLDVPLEVSVGFGRSWG 907 >gi|168483664|ref|ZP_02708616.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00] gi|168486718|ref|ZP_02711226.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00] gi|168492319|ref|ZP_02716462.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04] gi|172042928|gb|EDT50974.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00] gi|183570324|gb|EDT90852.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00] gi|183573486|gb|EDT94014.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04] gi|332205064|gb|EGJ19127.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47368] Length = 877 Score = 276 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYLQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + L Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 761 -----KSYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|149006807|ref|ZP_01830493.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74] gi|307126259|ref|YP_003878290.1| DNA polymerase I [Streptococcus pneumoniae 670-6B] gi|147761722|gb|EDK68686.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74] gi|306483321|gb|ADM90190.1| DNA polymerase I [Streptococcus pneumoniae 670-6B] gi|332076490|gb|EGI86952.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17545] Length = 877 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIV 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYMQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + L Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 761 -----KSYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|91070081|gb|ABE11006.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC612] Length = 421 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 83/510 (16%), Positives = 153/510 (30%), Gaps = 106/510 (20%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E L + + G +D+ L++ + ++ ++ L+ + + Sbjct: 2 YEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELSE-ENFNLSSPK 60 Query: 238 KLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L LF + L + T+ +T VL + +R ++ ++ Sbjct: 61 QLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHR-TLTKLLSTYID 119 Query: 293 TLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L +N GR+ A+ TGR S QN+P + Sbjct: 120 ALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNIPVRTE----------------- 161 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 S +R + + KL+ AD + IE R+LA +A E+ + AF +D++ Sbjct: 162 --------FSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILINAFHKNDDIHSL 213 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F ++ D+R +GK + + Y G K A +TG+++ Sbjct: 214 TAKLIF--EKEVISSDERRVGKTINFGVIYGMGIKK---FARSTGVSIPE--AKEFLIKY 266 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E + F + G E Sbjct: 267 KERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK---------------------- 304 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + K+ + L S R Q R Sbjct: 305 ---------------NGLGRLIGKDPYEIDLQSARR-------------AGMEAQSLRAA 336 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET-PDTDEFNA 644 +Q S DI+ M+ K ++L VHDE++ E PD+ E Sbjct: 337 ANAP------IQGSSADIIKIAMVQLNKKFIEMNVPAKMLLQVHDELLFEVEPDSLEITT 390 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++ M +PL + + Sbjct: 391 KLVKKTMEDCVK--LNVPLLVDIGIGDNWM 418 >gi|297587691|ref|ZP_06946335.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516] gi|297574380|gb|EFH93100.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516] Length = 875 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 86/660 (13%), Positives = 197/660 (29%), Gaps = 151/660 (22%) Query: 35 FGFDDHPVEL------WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FN 85 + D+ PV + + + KE E+ DV F+ + Sbjct: 328 YYVDNEPVIFAIYTDKVYITRNVDIVKSFKEEFESKDVNK----LSFDIKPCIYHLMRYG 383 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG-ETHECLYD 144 +DI + + +++ ++ ++I K E Sbjct: 384 IDIS-YNYDDVVIIEYLLDPSKTSYSM----------ERSDPKVIGYDFKSLEDITGKGR 432 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ---------ELWYLDQTINDR 195 K + Y + T ++++++ + ++ L + + Sbjct: 433 SKKTILESDEKEIDNYIVKYMMFTNKLYEKISEIEEEDMMHLYRDVEIPLIKVLCDMEFT 492 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G CV + ++ + E ++ +E L + + ++L LF + L + Sbjct: 493 GVCVKKETLVEMGELFEDEIKSIEDSVEELIGKKI-NINSSKQLAEVLFEDLELPVIKKN 551 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T Q VL + + R ++ ++ +V+ + DG++ T Q Sbjct: 552 KTGPSTDQEVLEALSGRHEIIDYILRYR-TIAKLKTTYIDGMVDLIKEDGKIHTTFQQTI 610 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 A +TGR S QN+P + +R + S+ Sbjct: 611 A-QTGRISSTNPNLQNIPIRTEEGR-------------------------LIRKAFVPSQ 644 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G L+ AD + IE RVLA +A ++ + AF+ G D++ T + F V +VT QR+ Sbjct: 645 GSVLLDADYSQIELRVLADLANDEVMIDAFKNGADIHRKTASEVFKVDFDKVTSLQRSNA 704 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + G+ + + + Sbjct: 705 KAVNFGIV--------------YGIGDYSLSKDLHI------------------------ 726 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + + + + ++ ++ Sbjct: 727 ------TRKEAKEYIENYLDTYKEIKQYMEDIVAIGKE---------------------- 758 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 + R ++ + R +Q + DI+ Sbjct: 759 ----KGYVETIMKRRRYIPELKSKN---YNVRSFGERVA------LNTPIQGSAADIIKV 805 Query: 613 GMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKA 665 M+ ++L VHDE++ + P+ + ++ +MT + + Sbjct: 806 AMVKFYNRLNEENLKAKLILQVHDELIVDCPEDEREKVLEIMKDVMTHAVDLKVDMKIDV 865 >gi|238060173|ref|ZP_04604882.1| DNA polymerase I [Micromonospora sp. ATCC 39149] gi|237881984|gb|EEP70812.1| DNA polymerase I [Micromonospora sp. ATCC 39149] Length = 902 Score = 276 bits (706), Expect = 8e-72, Method: Composition-based stats. Identities = 93/633 (14%), Positives = 175/633 (27%), Gaps = 131/633 (20%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVG 113 L L + V H+S R + T + A L + Sbjct: 380 LAAWLADPARPKVLHDSKHARLAFA-ARGWSLAGVA-RDTELAAYLARPDQRSYDLTDLA 437 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 +++ + F R L D ++R+ + Sbjct: 438 LRYLHRELRVDAPETGQLTFDGLGDDGEAEQNLMLQARATLDLA---DAIDAELSRDGEQ 494 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 ++ E L + + G D+ L E Q + + Sbjct: 495 SARLMAQVELPLSEVLAAMQRVGIAADLDYLQELEAHFAGEVKSAAQGAYAAVG-REFNL 553 Query: 234 RCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAV 288 ++L+ LF E GL +T T L P + +R ++ Sbjct: 554 GSPKQLQELLFGELGLPKTKKIKTGYTTDADALQWLYAQNPLPVLEHLLRHR-DVAKLKT 612 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 ++ L+++++ DGR+ T + A+ TGR S QN+P + Sbjct: 613 T-VDGLLKSVSEDGRIHTTFKQTVAA-TGRLSSTDPNLQNIPIRTEEGRR---------- 660 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R + +G + L+ AD + IE R++A ++ + ++AF +G D Sbjct: 661 ---------------IRRAFVVGKGFECLLTADYSQIEMRIMAHLSSDDKLIEAFNSGHD 705 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + T + F V A+VT DQR K M GL+ + Sbjct: 706 FHAATASSVFGVPVAEVTADQRRKIKAMNYG--------------LAYGLSAFGLSQQ-- 749 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + V + E+ Sbjct: 750 ----------------------------LGITAEEARGLMDNYFAGFGGVRDYLQEV--- 778 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + +G GR D+ ++ Sbjct: 779 VARARHDGYTSTIL-----------------------GRRRYLPDLVSDN---RQRRDMA 812 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDE 641 R +Q + DI+ M+ ++L VHDE+V E + Sbjct: 813 ERMALNAP------IQGSAADIIKVAMLRVDAGLREAGLRSRMLLQVHDELVFEVAPGER 866 Query: 642 FNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 L M + +PL+ + + + Sbjct: 867 DTLEALVRSQMGEA--YPLSVPLEVSVGQGRDW 897 >gi|332077340|gb|EGI87801.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41301] Length = 877 Score = 276 bits (706), Expect = 8e-72, Method: Composition-based stats. Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYLQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + L Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 761 -----KSYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|168489504|ref|ZP_02713703.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195] gi|183572034|gb|EDT92562.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195] gi|332075687|gb|EGI86154.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17570] Length = 877 Score = 276 bits (706), Expect = 9e-72, Method: Composition-based stats. Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIV 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + L Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|116670610|ref|YP_831543.1| DNA polymerase I [Arthrobacter sp. FB24] gi|116610719|gb|ABK03443.1| DNA polymerase I [Arthrobacter sp. FB24] Length = 955 Score = 276 bits (706), Expect = 9e-72, Method: Composition-based stats. Identities = 97/675 (14%), Positives = 177/675 (26%), Gaps = 147/675 (21%) Query: 21 ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTV 79 + ED + D D + L L + + V H Sbjct: 401 PGRIGEDAAALAI---VRDGAAVYIDLSGQDAEAENVLAAWLRDPEAPKVMHGFKAALKA 457 Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 L L++ T + + E + Sbjct: 458 LS-ARGLELE-GVVDDTSISGYLIQPDRRTYELAELAQHHLN-----------IEISTAV 504 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTV-------TREIFKRLEPLS--SKEQELWYLDQ 190 + GE V E+ +R + E + + Sbjct: 505 AKAGQLELSFDGDDSAAAGELVHAAAVVHALSRYFEAELKERKAEELLSTLELPVSQVLA 564 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G +D+ + + + V + ++L+T LF E L Sbjct: 565 DMELAGIAIDMQRMDEQLADLAKVIDNAQELAFAAIGHEV-NLGSPKQLQTVLFDELQLP 623 Query: 251 LEDLTET---TCQRVLSSN-KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 ++ T L + +K + + +S+ L +L +++ DGR+ Sbjct: 624 KTKKIKSGYTTDAASLKNLLEKTGHEFLVQLMAHRESSKLR-QMLESLKKSVAEDGRIHT 682 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 T A+ TGR S QN+P S VR Sbjct: 683 TYAQNVAA-TGRISSNNPNLQNIPIRSEEGRR-------------------------VRG 716 Query: 367 CVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + SEG + L+ AD + IE R++A ++G+ ++A+ GEDL+ + F+V QVT Sbjct: 717 IFVVSEGYECLLSADYSQIEMRIMAHLSGDAGLIQAYRDGEDLHRFVGSNIFHVPTDQVT 776 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 R+ K M L Y + L ++ Sbjct: 777 SAMRSKVKAMSYGLAYG-----LTSFGLSKQLEIS------------------------- 806 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + K + + V + + Sbjct: 807 --------------VDEARTLMKEYFDRFGAVRDYLRGVVDQAR---------------- 836 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 + GR D+ + R + +Q Sbjct: 837 ----------IDGFTATIEGRRRYLPDLTSTD---RQLRENAERIA------LNSPIQGS 877 Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + DI+ M+ ++L VHDE+V E + L M S Sbjct: 878 AADIIKRAMLGVHAELKAQGLKSRMLLQVHDELVLEVAAGEREAVEKLVTEQMGSAAD-- 935 Query: 659 KGLPLKAEGYESKRY 673 +PL + + Sbjct: 936 LSVPLDVQIGVGPSW 950 >gi|302550714|ref|ZP_07303056.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736] gi|302468332|gb|EFL31425.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736] Length = 888 Score = 276 bits (706), Expect = 9e-72, Method: Composition-based stats. Identities = 100/622 (16%), Positives = 177/622 (28%), Gaps = 133/622 (21%) Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKM 123 + HN+ V + T + A L A+ Sbjct: 380 PKILHNAKGAMRVFAEH-GWSVEGVTM-DTALAAYLVKPGRRSFDLDALSLEYLHRELAP 437 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 + F + E E + E +V + E Sbjct: 438 AAEADGQLAFGEDEGAEAEALMIQARAVLDLGEAFESRLEEVGAADLLR-------DMEL 490 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 L + G D A + Q+ + +E + + ++L+ L Sbjct: 491 PTSALLARMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHAAAGH-EFNLGSPKQLQEVL 549 Query: 244 FLETGLHLEDLTET---TCQRVLSSNKKLTP-QAIQVFNNRMRASRSAVLKLNTLVEAMN 299 F E L T+T T L+ T + + ++ V + L++ + Sbjct: 550 FGELALPKTKRTKTGYTTDADALAWLAGQTDNELPVIMLRHREQAKLRVT-VEGLIKTIA 608 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 +DGR+ T A+ TGR S QN+P + Sbjct: 609 ADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEGRA--------------------- 646 Query: 360 ISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R + EG + L+ AD + IE RV+A ++ ++ ++AF +GEDL+ T ++ F Sbjct: 647 ----IRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAASQVFA 702 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 V P V + R K M L GL+ + + +A Sbjct: 703 VEPTAVDAEMRRKIKAMSYGL--------------AYGLSAFGLSQQLNIEAA------- 741 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 + A+ ++ V + L +A ++ G Sbjct: 742 -----------------------EARALMDAYFERFGGVRDY---LRRAVDEARATGYTA 775 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 GR D+ ++ R Sbjct: 776 TL-----------------------FGRRRYLPDLNSDN---RQRREAAERMALNAP--- 806 Query: 599 ENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLM 651 +Q + DI+ M+N A ++L VHDEIV E + A L M Sbjct: 807 ---IQGTAADIVKIAMLNVDSALKDAGLTSRMLLQVHDEIVLEVAPGERATAEELVRREM 863 Query: 652 TSNPSWAKGLPLKAEGYESKRY 673 + +PL + Sbjct: 864 ANAVQ--LRVPLGVSVGSGPDW 883 >gi|296269454|ref|YP_003652086.1| DNA polymerase I [Thermobispora bispora DSM 43833] gi|296092241|gb|ADG88193.1| DNA polymerase I [Thermobispora bispora DSM 43833] Length = 893 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 102/671 (15%), Positives = 189/671 (28%), Gaps = 131/671 (19%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF 75 L G + + A L L L + AH+ Sbjct: 336 LAFLGTYG-SGTGRLDGIAIATSAGAAYLDPARLTQEDEAALAAWLADETKPKAAHDVKG 394 Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135 L LD+ T + A + + + + Sbjct: 395 PLLALWEH-GLDLRGLTC-DTAIAAYLAMPGQ------RSFPIEELVLRYLNRELRYETP 446 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTV-TREIFKR--LEPLSSKEQELWYLDQTI 192 + L+D + L + + R + R ++ E L + + Sbjct: 447 ADGQASLFDDVEAGMARDLALKAQAVRELADALERHLAARGGTRLMTEVELPLTRVLAEM 506 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G D TL + + +L + ++L+ LF++ GL Sbjct: 507 EHTGIAADRQYFATLEAEFSAAAKQAVEAAHALVG-EQFNLGSPKQLQEILFVKLGLPKT 565 Query: 253 DLTET---TCQRVLSSNKKLTP-QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 +T T L+ T + + ++ + L++ + DGR+ T Sbjct: 566 KKIKTGYTTDADALAWLATQTDNELPAILLRHRDQTKLRAT-VEGLIKEIADDGRIHTTF 624 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + A+ TGR S QN+P + +R Sbjct: 625 NQIVAA-TGRLSSEKPNLQNIPIRTAEGRR-------------------------IRKGF 658 Query: 369 IASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 I +G L+ AD + IE R++A ++G++ + AF +G D + T AR F + P QVT + Sbjct: 659 IVGKGYETLLTADYSQIELRIMAHLSGDEAMIAAFGSGHDFHQATAARVFGLPPDQVTPE 718 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 RA K M L Y LN+ Sbjct: 719 LRARIKAMNYGLAYG-----LSDFGLAGQLNIPVA------------------------- 748 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 +K+ + ++ + V E N + + Sbjct: 749 --------------EARALKEEYFEEFAGVREYLNRVVDQARK----------------- 777 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + GR D+ ++ R +Q + Sbjct: 778 ---------DGYTETILGRRRYLPDLTSDN---RQRREMAERMALNAP------IQGSAA 819 Query: 608 DILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLP 662 DI+ M+ KA ++L VHDE+V E + + +++ M + +P Sbjct: 820 DIIKVAMLKVRKAMEGMRSRMLLQVHDELVFEVAPGELDDLIALVREHMGGA--YPLRVP 877 Query: 663 LKAEGYESKRY 673 L + Sbjct: 878 LDVSIGTGPTW 888 >gi|113474408|ref|YP_720469.1| DNA polymerase I [Trichodesmium erythraeum IMS101] gi|110165456|gb|ABG49996.1| DNA polymerase I [Trichodesmium erythraeum IMS101] Length = 1045 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 88/746 (11%), Positives = 212/746 (28%), Gaps = 167/746 (22%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDD--HPVELWDCVHDPV-------MPQVL 57 D ET S D ++ + V H + + L Sbjct: 386 DTETTSLEP----------RDAELVGIGCCWGKNMEDVAYIPTGHKTDKNLDKVTVLESL 435 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K LE+++ V NS F+R V C + + + T++ + +L+ + Sbjct: 436 KPVLESSEYPKVFQNSKFDRLVF-RCQGIKL-TGVFFDTMLASYVLNPEAKHSLEEIYIR 493 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L ++++ + +N+ +YC V VT ++ ++L Sbjct: 494 Y------------LRNVGINLQSYQDVVSKNQTIADLDILKVADYCGTQVWVTFQLVEKL 541 Query: 176 EPLSSK------------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 K EQ L + + +G +D+ + + + + Sbjct: 542 RTELEKADKNKSTEKSLYRLLVDVEQPLEPVLAEMEFQGIRIDIEYLKKFSVQLKEDLEE 601 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLET-GLHLEDLTETT------CQRVLSSNKKLT 270 +++ V ++ F ++ ++L +++ Sbjct: 602 IEKRAFKTVDSQVLQKYLQTEIHEIDFNSFSNQQELKKAISSPILKAYITKLLKEHRQNL 661 Query: 271 PQAIQVFNN---RMRASRSA----VLKLNTLVEAMNSDGRL------------------- 304 N R + ++ L ++ + R Sbjct: 662 ENIESQINQVETRDLLNLNSPSQLSELLFRILNQNHKKSRRIKTGYSTDVVALEKLQTEP 721 Query: 305 -RGTLQFLGASRTGRWSGCVFPPQNLPR----------PSRSHEELDQIITHLPTSITSD 353 + + + + +PR + + + D + Sbjct: 722 EHHPIIDEILNHRTLYKLFSTYVEAIPRLVRSDTQRVHTNFNQTQTDTGRLSSSEPNLQN 781 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 S +R + + LV AD + IE R+LA ++ E ++A++ +D++ T Sbjct: 782 IPIGTKFSRQIRQAFLPKKDWLLVAADYSQIELRILAHLSQEPVLIEAYKNNQDVHTVTA 841 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 F +++ ++R +GK + + Y GA+ + + + Sbjct: 842 KLLF--EKEEISSEERRVGKTINFGVIYGMGAQKL-----ARSVKITVKESKQFLEKYKQ 894 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 ++ + +++ + +G + + + S+ + Sbjct: 895 QYSLVFAYLEKLKKQAIAKGYVETILGR------RRYFELESKTIRDLKDKEPE------ 942 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 ++ + Q+ R Sbjct: 943 --------------------------------------EINLQELKFSQNDAQILRSAAN 964 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASM-LY 648 +Q S DI+ M+ K ++L VHDE+V E P ++ + Sbjct: 965 SP------IQGSSADIIKIAMIRLNKILTNYQTKLLLQVHDELVFEVPPSELEKMQQLIK 1018 Query: 649 HLMTSNPSWAKGLPLKAEGYESKRYR 674 M + + +PL + + K + Sbjct: 1019 STMENAVT--LKVPLIVDIHGGKNWM 1042 >gi|167630919|ref|YP_001681418.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] gi|167593659|gb|ABZ85407.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] Length = 645 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 102/717 (14%), Positives = 190/717 (26%), Gaps = 154/717 (21%) Query: 4 LFIDFETRS-PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMP 54 + DFET A + +F + H + Sbjct: 22 IAFDFETAPREKYRRDEKAALDAHKADIAGVSFSVSEGTAVYVPLKHKTGKNAGSPDKIM 81 Query: 55 QVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 Q L E N V +AHN FE L + + T + A LK+ Sbjct: 82 QWLSENVFANRKVVKIAHNLSFEAMFL-YALGVVLQP-PCYDT-IAAALM----TLKSNT 134 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L+ ++ + + R Y D T ++ Sbjct: 135 AFRTLADSGLKTLTQELFGVDLPSFETVTAGRYFDELDPQDEETVRYACADSDYTLRLYH 194 Query: 174 RLEPLSSKEQELWYLDQT------------INDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ + G D L + + +L Sbjct: 195 LFNNWFNRYLPKHRFIVEKLESPAAVYCGLMKYNGLLADEELMLKKQAEAEGKLAELRGN 254 Query: 222 LESLTYGLVSSSR-CLEKLKTWLFLETGLHLEDLTET-----------TCQRVLSSNKKL 269 + L + + K +L+ + L + T N+ Sbjct: 255 IAFLIGDVNIGANASTSAFKKYLYDDLKLPVFKTTAKYQEAMDDEAMILLSEWCRENRPE 314 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 + ++ R + ++ +E +NS F + TGR++ QN Sbjct: 315 LAELFELVQEYRRWGKIKSTYIDGYLEYINSVTGRIHPDMFPLGTETGRFAARNPNLQNC 374 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 PR VR+ IA +GK L+ D + IE RV Sbjct: 375 PRKDND-------------------------PVGVRNFFIAPKGKALLSLDFSQIELRVG 409 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-------VTKDQRAIGKVMELALGYQ 442 A+ ++ L+ + TG D++ T + + + + K++RAI K + Y Sbjct: 410 AFYCRDERMLETYRTGGDIHAQTTSVIYRIPFEEAADKSAQHYKERRAIAKNCNFGVFYG 469 Query: 443 GGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 K + GL+ + Sbjct: 470 LFPKGLHRNLKFKAGLDTP---------------------------------------LS 490 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 CER+ + + R+ + + ++ Sbjct: 491 ECERIIANLKAGYPRLVQWQ---EKTKKRAASRRYTETWL-------------------- 527 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---- 617 GR D+ ++ + + +Q + DIL + Sbjct: 528 ---GRRRYLPDIASSDWGKKSFAER---------CALNTPIQGTAADILKLALGRIIEGL 575 Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKR 672 + VL +HDE+V E P+ A++ + M P +P+ AE R Sbjct: 576 PQRMRLRPVLQIHDELVFEVPEDKVHEAAVFIKSCMEERPFEEFDVPIVAEAAFGVR 632 >gi|303248854|ref|ZP_07335103.1| DNA polymerase I [Desulfovibrio fructosovorans JJ] gi|302489723|gb|EFL49656.1| DNA polymerase I [Desulfovibrio fructosovorans JJ] Length = 874 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 107/601 (17%), Positives = 182/601 (30%), Gaps = 145/601 (24%) Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 +P+ W + A + + Sbjct: 402 LPLSLWFDLGLAAYLLDPEQ------RNYGFPRLRDSLFADP----------------TV 439 Query: 148 PNHREAWRLFGEYCKGDVTV-TREI--FKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 + V T + + + E L + + G VD+ Sbjct: 440 DASAVSPDDTARAAALLAEVYTARLDTAGLTDLVERLELPLIPVLLDMERAGIGVDLRSL 499 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQ 260 V + T+L++EL +L + R ++L LF E GL + T +T Q Sbjct: 500 AAFGAEVATDLTRLEKELHTLAGHP-FNPRSSQQLGEILFTEMGLTPKGKTPGGAASTSQ 558 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 L P ++ R + + L+ L + ++DGR+ TL A+ TGR S Sbjct: 559 DALERLAGSNPLVDRILEFR-KLEKLRSTYLDPLPKLADADGRIHTTLN-NMATATGRLS 616 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380 QN+P +R C +A GK LV AD Sbjct: 617 SSNPNLQNIPIRGPLGRR-------------------------MRECFVAGPGKTLVAAD 651 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA ++GE L AF G D++ T + F+ A++ D+R K + Sbjct: 652 YSQIELRVLAHLSGEPALLSAFAAGADIHARTASLLFDKPEAEIGPDERRQAKTIN---- 707 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 G+ + + Sbjct: 708 ----------FGLLYGMGPQKLS------------------------------RDLGIKL 727 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 A + + ++ S +S ++ + ++ + G Sbjct: 728 DAAKAFIAKYFERLSGLSAFYDNIVESAKT---QGYVTTLA------------------- 765 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK- 619 GR + D+ + S Q R+ +VQ + DI+ M+ A K Sbjct: 766 ----GRRRLLPDIESKNS---QLASQARRQAI------NTVVQGGAADIIKMAMLAAHKD 812 Query: 620 -----AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 AG +VL +HDE++ ETP A L LM A +PL + + Sbjct: 813 ADLKRAGAVMVLQIHDELLLETPMDTADAAGKRLSDLMCGVIKLA--VPLVVDWGTGHTW 870 Query: 674 R 674 Sbjct: 871 G 871 >gi|317495649|ref|ZP_07954016.1| DNA polymerase I [Gemella moribillum M424] gi|316914268|gb|EFV35747.1| DNA polymerase I [Gemella moribillum M424] Length = 873 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 84/674 (12%), Positives = 191/674 (28%), Gaps = 157/674 (23%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT-VL-- 80 + V+ A + D V ++ + + ++ LE+ +V ++ +L Sbjct: 327 HNSDVVNIAV-YKDENVYIF---SEDNFFENKFVRNYLESDAEKVV-----YDYKKILYI 377 Query: 81 KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 + + + + + L +I + E + Sbjct: 378 AKRNGISDIAGNVFDVKIASYLLDVTVKTE-------LDKIVFNTLGNIIK--SEEEIYG 428 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQ 190 R P + Y V ++ + +E ++ + Sbjct: 429 KGVKRTLPTNEI----LYPYLAQVVKSIFDLKEIQSARLKEENMDSLYKNIEVKVARVLA 484 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G V ++ +D L+ + +L + ++L LF + GL Sbjct: 485 NMEYEGIHVSKKALEDMSDELDERIKILEASIHTLAGS-EFNIASPKQLGIVLFEDLGLP 543 Query: 251 LEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 T+ +T VL + + R+ ++ LV+ + G++ Sbjct: 544 PVKKTKTGYSTSVEVLEQLQHSHEIIPLIMEYRV-LTKLNSTYAKGLVKDITRKGKIHTR 602 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 + ++TGR S QN+P ++ +R Sbjct: 603 YEQ-TLTQTGRLSSVNPNLQNIPTRIEEGKK-------------------------IRKA 636 Query: 368 VIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 I S+ + ++ D + IE RVLA MA ++ + AF D++ T + V+ +VT Sbjct: 637 FIPASDDRVILSIDYSQIELRVLAHMAQDKGMIDAFTHDLDIHTKTASEVNGVSLDEVTP 696 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 R K + + G++ ++ Sbjct: 697 TMRREAKAVNFGIV--------------YGISDFGLSN---------------------- 720 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + + + S V++ ++ + ++ Sbjct: 721 --------NLGITRKRAKEFIDKYLETFSGVNKYMTDIVEFAKE---------------- 756 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 + + R ++ + +Q + Sbjct: 757 ----------HGYVETLYNRRRALPEINAKNKIV---------ASLNARLAMNTPIQGTA 797 Query: 607 RDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAK 659 DI+ M+NA TK ++L VHDE++ + + + +M Sbjct: 798 ADIIKLAMINAFDYIEKTKVDAKLLLQVHDELIFDVNKDVVDEFTIEMVKIMEEAVE--L 855 Query: 660 GLPLKAEGYESKRY 673 + LKAE + Sbjct: 856 DVKLKAEASSGSSW 869 >gi|291556803|emb|CBL33920.1| DNA polymerase I [Eubacterium siraeum V10Sc8a] Length = 829 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 90/631 (14%), Positives = 177/631 (28%), Gaps = 154/631 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112 LK ++D T F+ L+ + T + A +L + Sbjct: 336 ELKAY-ADSDSTKYT----FDIKDTLTVSGLEKLNNNKFDTTLAAYLVDPDSNDYSLSRL 390 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K I + C D+ + Sbjct: 391 CAQYGVPEGNSIQEKS-ITVAALNDILNCKISETGSAAVLT----------DIEIPLA-- 437 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + + G +D + V + K+ +E+ + Sbjct: 438 --------------TVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYAGY-EFN 482 Query: 233 SRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L + LF + L T+ +T VL S P + R ++ Sbjct: 483 IGSPKQLGSVLFEKLALPSAKKTKTGYSTNADVLESLMDKHPIVPLITEYR-ALTKLQNT 541 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L++ + DGR+ T + +RTGR S QN+P + E Sbjct: 542 YVTGLLKVVGEDGRIHSTFKQ-TETRTGRISSAEPNIQNIPVRTPLGRE----------- 589 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R A +G LV AD + IE RVLA ++G++ KAF G D++ Sbjct: 590 --------------MRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIH 635 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T ++ FN VT D R+ K + G+ + + + Sbjct: 636 TVTASQVFNQPIEWVTPDLRSKAKAVNF--------------GIVYGIGAFSLSKDI--- 678 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 +++ K+S +++ + Sbjct: 679 ---------------------------GVSVPKASEYIRSYLSKYSGIAQYMELTVAKAK 711 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + + + GR +++ R Sbjct: 712 R--------------------------DGYVETMFGRRRYIKELAAKN---KNLQAFGER 742 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN 643 +Q + DI+ M+ ++L VHDE++ E + Sbjct: 743 VA------KNTPIQGTAADIIKIAMIKVYNRLKDSGLDARLILQVHDELIVEAKEDCAEK 796 Query: 644 AS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +L M + +P+ + K + Sbjct: 797 VALLLKEEMENAVK--LTVPMTVDVNIGKTW 825 >gi|303254143|ref|ZP_07340257.1| DNA polymerase I [Streptococcus pneumoniae BS455] gi|302598897|gb|EFL65929.1| DNA polymerase I [Streptococcus pneumoniae BS455] Length = 870 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 97/669 (14%), Positives = 187/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 327 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 376 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 377 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 426 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 427 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 486 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 487 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 545 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 546 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 603 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 604 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 638 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 639 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 698 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + G++ ++ Sbjct: 699 AKAVNFGVV--------------YGISDFGLSN--------------------------- 717 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 718 ---NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 753 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 754 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 799 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 800 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 857 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 858 ADENEGATW 866 >gi|289450265|ref|YP_003475168.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184812|gb|ADC91237.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 922 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 104/614 (16%), Positives = 183/614 (29%), Gaps = 139/614 (22%) Query: 86 LDIPIHRWICTLVLARSNGLPSA---LKAVGE--ALKLSSQKMEEG-KELIARFCKGETH 139 +D I +LA + G L + E L G KEL C + Sbjct: 417 VDYTTGTIIDLSILAYACGDAQKVAYLSDLAELYRLNYPISSENTGMKELPENNCSISSA 476 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLD 189 E + + Y ++ ++ + L + Sbjct: 477 EAEAQAQAVAVADLNKELISY----FNTIIAVYSLVKSKIESQGLNYLVSQVDLPLVEVL 532 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G VD A+ + E + E+ L + +L LF E GL Sbjct: 533 TQMERDGVAVDEAVLQRQTEAFSSEIADIADEIYKLAGH-EFNLNSPRQLAEVLFNELGL 591 Query: 250 HLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 ++ T L + L P + R S+ + L + + +D R+ Sbjct: 592 PGGKKLKSGYSTSAEDLMHLQDLHPIVDLILRYR-MLSKLLSTFIVGLHKYIAADHRIHT 650 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 T ++TGR S QN+P + +R+ Sbjct: 651 TFHQ-TLTQTGRLSSSDPNLQNIPARTEEGRR-------------------------IRA 684 Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 IA+ G L+ AD + IE R+LA ++G+ LKAF ED++ T AR F++ P VT Sbjct: 685 AFIAAPGCILIDADYSQIELRLLAHLSGDTAMLKAFAAKEDIHALTAARVFHMDPVDVTS 744 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R +GK + ++ Y A + + L+++ + + + + Sbjct: 745 EHRRVGKTINFSIVYGISAFSLAQ-----DLHISVAEAKNYIAEYYATYPQIKAYLNDLV 799 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 E + +RR + Sbjct: 800 ERAKIDGYVETMFK-----------------------------------------RRRYI 818 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 P + K L R +Q + Sbjct: 819 PELKSKNYNRRLF---------------------------GERVAMNTP------IQGTA 845 Query: 607 RDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAK 659 DI+ M+N + ++L +HDE+V E P+ + A +L + M Sbjct: 846 ADIMRLAMVNLARKLREKKLKSHMILQIHDELVLEVPEPEFAEVAELLRNEMERVIDLKV 905 Query: 660 GLPLKAEGYESKRY 673 LP E K + Sbjct: 906 SLP--VELEYGKNW 917 >gi|307066713|ref|YP_003875679.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Streptococcus pneumoniae AP200] gi|306408250|gb|ADM83677.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Streptococcus pneumoniae AP200] Length = 889 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 97/669 (14%), Positives = 187/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 346 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 395 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 396 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 445 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 446 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 505 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 506 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 564 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 565 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 622 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 623 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 657 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 658 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 717 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + G++ ++ Sbjct: 718 AKAVNFGVV--------------YGISDFGLSN--------------------------- 736 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 737 ---NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 772 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 773 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 818 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 819 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 876 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 877 ADENEGATW 885 >gi|303232660|ref|ZP_07319345.1| DNA-directed DNA polymerase [Atopobium vaginae PB189-T1-4] gi|302481146|gb|EFL44221.1| DNA-directed DNA polymerase [Atopobium vaginae PB189-T1-4] Length = 1126 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 86/601 (14%), Positives = 161/601 (26%), Gaps = 127/601 (21%) Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + I T + A +A V E L + ++ I + Sbjct: 634 VAIDAVFDTQLAAYLLNSDAASYDVDELLMQYAGVASYPQQPIGSAAAHGFATDDDQKAL 693 Query: 148 PNHREAWRLFGEYCKGDVTVTREIF--KRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 E + + + + E L + + G VD + H Sbjct: 694 S---EMLACAKAQRVLQAPLMYALMLDESYDVYCGIELPLICVLLDMERTGLHVDTDILH 750 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTE----TTC 259 + ++ E + L + + +L LF L + T+ +T Sbjct: 751 EQSMAINREINHMLATLHTDIG-ETINIDSPMQLSHVLFDVWQLPTKGLKKTKRGYFSTN 809 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 + L + K + + + R ++ L+ L + DGR+ T A+ TGR Sbjct: 810 AKTLETLSKQDDRVQLILDYR-ERAKLKSTYLDALPAQIKPDGRIHTTFNQTVAA-TGRL 867 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+P S + VR ++ + Sbjct: 868 SSSDPNLQNIPTRS-------------------------QLGHRVRKAFTVADDSVFLTC 902 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R+LA ++ + + AF +G D + T +R F + VT R+ K + + Sbjct: 903 DYSQIELRLLAHLSQDPHLIAAFNSGADFHAATASRIFGIEQDAVTPQLRSRAKAVNFGI 962 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 + A Sbjct: 963 V--------------------------------------------YGQQAFGLASSLKIS 978 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + + + + V E +E + Sbjct: 979 RATAKEMIDKYFEVYPCVREFLDESVAFAR--------------------------AHGY 1012 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + GR + + R +Q + DI+ M+ K Sbjct: 1013 VPTMYGRKRHIEHINASNF---QLRSFAERTAMNHP------MQGSAADIIKLAMIEVEK 1063 Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKR 672 +VL +HDE+ E D S L M S +PL A+ + Sbjct: 1064 RLRASSLRAHLVLQIHDELDFEVATADCDALSELVKDAMEHVVS--LRVPLIADISYASN 1121 Query: 673 Y 673 + Sbjct: 1122 W 1122 >gi|291563492|emb|CBL42308.1| DNA polymerase I [butyrate-producing bacterium SS3/4] Length = 877 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 79/597 (13%), Positives = 170/597 (28%), Gaps = 131/597 (21%) Query: 93 WICTLVLARSNGL---PSALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 V A + L ++ +LI + + N Sbjct: 392 VYDAGVAAYLLNPLKDTYGYDDIARDVLGMTVPSKT---DLIKKMS-YKDACAKEQDNFT 447 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL--DQTINDRGYCVDVALAHT 206 + + G + + EL + + D G V Sbjct: 448 -RMAGLMAYTAFAAGKPLSE-RLAAEGMEDLYRNIELPLIYTLFHMEDEGIAVRREELTA 505 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263 + + L++E+ +T + ++L LF + + T+ +T VL Sbjct: 506 YGGKLKKQIAVLEKEIWEMTGQ-EFNINSPKQLGEILFEKMQIKGGKKTKTGYSTAADVL 564 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 P ++ + R ++ + L + DGR+ + TGR S Sbjct: 565 EKLAPDYPVIQKILDYRQY-TKLNSTYADGLGTYIKEDGRIHSRFNQ-TITATGRISSTE 622 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+P E +R + G + AD + Sbjct: 623 PNLQNIPIRMELGRE-------------------------IRKVFVPRNGFLFLDADYSQ 657 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA M+G++ ++A++T +D++ T ++ F++ +VT QR K + Sbjct: 658 IELRVLAHMSGDERLIEAYKTAQDIHAITASQVFHIPLNEVTPLQRRNAKAVNF------ 711 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G++ + + Sbjct: 712 --------GIVYGIS------------------------------AFGLSEDLSISRKEA 733 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + + +V + L ++ + Sbjct: 734 MEYIERYFETYPQVKSFLDSLVAHAKE--------------------------QGYVTTM 767 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620 GR ++ ++ + R +Q + DI+ M+ + Sbjct: 768 FGRRRPVPELKSSNFMQRSF---GERVAMNSP------IQGTAADIIKIAMIRVDERLRR 818 Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ ET + ++ + M S + L+ + + K + Sbjct: 819 ENLRSRLILQVHDELLIETAEDEKETVMKILSEEMHHAAS--LKVELEIDMHGGKNW 873 >gi|307710073|ref|ZP_07646517.1| DNA polymerase I [Streptococcus mitis SK564] gi|307619053|gb|EFN98185.1| DNA polymerase I [Streptococcus mitis SK564] Length = 877 Score = 275 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 96/666 (14%), Positives = 193/666 (28%), Gaps = 146/666 (21%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFN 85 ++ FA+ + +L+ ++ + + +A V ++ VL F Sbjct: 333 DLVGFAWSCGE---KLYATDKLELLQEPIFKAFLEKTPLRV-----YDFKKAKVLLHRFG 384 Query: 86 LDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 +D+ + + + + ++ L + GK + + E Sbjct: 385 VDLQ-APAFDSRLAKYLLSTVEDNEIATIASLYGQTYLIDDETFYGKGVKKALPEREKFL 443 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 R E + E + + ++ EQ L ++ + G V Sbjct: 444 EHLARKLAILVETEPVLLEKLSENGQLEL-LY-------DMEQPLAFVLAKMEIAGITVK 495 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256 + D+ KL QE+ L + ++L LF + GL L T+ Sbjct: 496 KETLLEMQAENDLVIEKLTQEIYELAG-EEFNINSPKQLGVLLFEKLGLPLEYTKKTKTG 554 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + P ++ + R ++ + L + + +DG++ ++ Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-LTQ 612 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374 TGR S QN+P +R + E Sbjct: 613 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWEDS 647 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + ++ Sbjct: 648 VLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERSE----------- 696 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + A NF + + Sbjct: 697 --------------------------------DVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + + ++ + +E+ + Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD------------------------ 760 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 + R D+ + R +Q + DIL M Sbjct: 761 --KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILKIAM 809 Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEG 667 + KA ++L VHDEIV E P ++ L M +PL A+ Sbjct: 810 IQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YESKRY 673 E + Sbjct: 868 NEGATW 873 >gi|303260668|ref|ZP_07346631.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293] gi|303263159|ref|ZP_07349082.1| DNA polymerase I [Streptococcus pneumoniae BS397] gi|303269472|ref|ZP_07355239.1| DNA polymerase I [Streptococcus pneumoniae BS458] gi|302638198|gb|EFL68670.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293] gi|302641006|gb|EFL71386.1| DNA polymerase I [Streptococcus pneumoniae BS458] gi|302646932|gb|EFL77156.1| DNA polymerase I [Streptococcus pneumoniae BS397] Length = 877 Score = 275 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 97/669 (14%), Positives = 187/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + G++ ++ Sbjct: 706 AKAVNFGVV--------------YGISDFGLSN--------------------------- 724 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 725 ---NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|300813963|ref|ZP_07094261.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511926|gb|EFK39128.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 885 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 81/633 (12%), Positives = 180/633 (28%), Gaps = 127/633 (20%) Query: 47 CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106 ++ LK E+ + + ++ + VL +D+ + +++ Sbjct: 354 IDYNKDNLSNLKALWEDDSIEKLGYDLKEDIIVL-QYNKIDLK-NYCHDSMIAEYLLNST 411 Query: 107 SAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 + + + + K EE K D N ++ Sbjct: 412 ESNYEIDHLASSYFNKAYKSEEELLGKGVKKKKFQEIDEGDLNSYFSYILNMVYKISPLQ 471 Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + E + + E L + + G DV + + +++ + L+ + Sbjct: 472 MQKIEAE--GMKDLYINVELPLIEVLANMEIVGIRTDVNILNEIDEKIKERINDLEFNIY 529 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280 + ++L LF + L + T+ +T VL + + + R Sbjct: 530 KD-ADEQFNINSPKQLGQILFEKMDLPVIKKTKTGYSTSADVLEKLRGKSLIIDNILEYR 588 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + S+ ++ L + +N + + TGR S QN+P + Sbjct: 589 -KISKIKNTYIDGLRDVINKKTGRIHSRFNQTVTSTGRISSTEPNLQNIPIKTHEGR--- 644 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R +++SEG LV +D + IE RVLA ++ + + + Sbjct: 645 ----------------------LIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMIN 682 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ T + F+ +V+ + R++ K + + Y GL+ Sbjct: 683 AFADGLDIHRKTASEVFHTPYDEVSDELRSMAKAVNFGIVYGIS---------DYGLS-- 731 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + Sbjct: 732 ---------------------------------QNLNIPRKEAKTYIDNYLGHFQGIKKY 758 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 N++ + R ++ Sbjct: 759 MNDII--------------------------HVGTEKGYVETLLHRRRYIPELKAKNF-- 790 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVC 634 R +Q + DI+ M+ ++L +HDE+V Sbjct: 791 -NIRSFGERIA------LNTPIQGTAADIIKIAMVGVYKELKKKNLKAKLILQIHDELVV 843 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAK--GLPLKA 665 + PD + + + +M A +PL Sbjct: 844 DAPDEE---VAEVCEIMKDVMDNALIMKVPLSV 873 >gi|312198715|ref|YP_004018776.1| DNA polymerase I [Frankia sp. EuI1c] gi|311230051|gb|ADP82906.1| DNA polymerase I [Frankia sp. EuI1c] Length = 971 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 102/662 (15%), Positives = 178/662 (26%), Gaps = 132/662 (19%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 V A D + L L + AH+ L + Sbjct: 419 VAGIALAPPKGKAAWIDPTQLTPADEQALAGWLADPAKPKAAHDVKGPMLALAE-LGFTL 477 Query: 89 PIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 T + A L + K +E E Sbjct: 478 A-GVTSDTALAAYLALPGQRSFDLGDLVLRYLHRELKADEAPSDGQLTLDVEVEGVEESA 536 Query: 146 NKPNHREAWRLFGEYC-KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 R GE D + R L E L + + G D Sbjct: 537 EAEVDVVRARAVGELADALDGDLERR--SAARLLRDIELPLLTVLAGMERAGIAADAEYL 594 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261 L E TK+ + + + ++L+ LF E GL +T T Sbjct: 595 ADLQSQYGTEVTKVVEAAHEIVGRP-FNLGSPKQLQQILFEELGLPKTKKIKTGYTTDAD 653 Query: 262 VLSSNK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 L+ P + +R +R + +L+ ++ GR+ T + A+ TGR Sbjct: 654 ALAWLATNSEHPLIPTLLRHR-DVARLK-TVVESLLPMIDDAGRIHTTFNQMIAA-TGRL 710 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVV 378 S QN+P + +R + G L+ Sbjct: 711 SSTDPNLQNIPIRTAEGR-------------------------QIRRAFVVGPGYETLLT 745 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++G+ ++AF +GEDL+ A++FN+ A+V + R K M Sbjct: 746 ADYSQIEMRIMAHLSGDAGLIEAFASGEDLHTFVAAQAFNLPVAEVDPELRRRIKAMSYG 805 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 GL+ A + Sbjct: 806 --------------LAYGLS------------------------------AYGLATQLGI 821 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +A+ + V + + + + Sbjct: 822 HPDEARDQMEAYFARFGGVRDFLRGVVDQARK--------------------------DG 855 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 GR D+ ++ S R +Q + DI+ M+ Sbjct: 856 YTETILGRRRYLPDLTSDNSQRRQM---AERMALNAP------IQGSAADIIKIAMLGVD 906 Query: 619 K------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESK 671 + ++L VHDE+V E + A L M + + +PL+ Sbjct: 907 RGLRDAGLRSRLLLQVHDELVLEIAPGERERAEALVRAEMANA--YTMSVPLEVSVGSGH 964 Query: 672 RY 673 + Sbjct: 965 TW 966 >gi|301801001|emb|CBW33665.1| DNA polymerase I [Streptococcus pneumoniae INV200] Length = 877 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 97/669 (14%), Positives = 187/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + G++ ++ Sbjct: 706 AKAVNFGVV--------------YGISDFGLSN--------------------------- 724 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 725 ---NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|293400879|ref|ZP_06645024.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305905|gb|EFE47149.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 865 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 83/657 (12%), Positives = 187/657 (28%), Gaps = 132/657 (20%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA--CF 84 D + FA ++ E P L + L + V ++ Sbjct: 327 DATLYGFALS-KENKNEYITLEDARKDPAFL-QYLATKNDKAV-----YDAKNFYHACHK 379 Query: 85 NLDIPIHRWICTLVLARSNGLPSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 N I + ++ A + + + E + KG+ + Sbjct: 380 NNLIAVDVNFDIMLAAFLVDQTISDYEKLAEKYHFDQ----SIHKEDIYGKKGKPKLIDF 435 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 + + T + + + + E L + + G D A+ Sbjct: 436 AQQSKYAMLQAENLYSIVAL-LDETLQEMEMKDLFDTIEMPLTRVLYAMEKEGVYCDKAV 494 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263 + + + L ++ + + ++L + L+ E GL +T VL Sbjct: 495 LQKIADETEAKINALSLQIYEIAGM-EFNINSPKQLASVLYDELGLKAGKKR-STAADVL 552 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + P + +R + + L + + +DG++ + ++TGR S Sbjct: 553 EKLVHVHPIIPLLLEHR-KYQKIYSTYAIGLAKHILADGKIHTLFNQIQ-TQTGRLSSSE 610 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+ + + +R +ASEG L+ AD + Sbjct: 611 PNLQNISVRNEEGKG-------------------------IRKAFVASEGHVLLSADYSQ 645 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+LA MA E+ + AF D++ T + F+VA +V + R K + Sbjct: 646 IELRMLAHMADEEQMIDAFNHDIDIHTKTAMQIFDVAHDEVDANMRRSAKTVN------- 698 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G + + Sbjct: 699 -------FGIVYGQSDFGLSEQ------------------------------LGISRKEA 721 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + ++ + E+ + + Sbjct: 722 HTFIEKYFASYPKIKTFMDATIAYCEE--------------------------HGYVKTL 755 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----- 618 R +++ + + + R +Q + D++ M++ Sbjct: 756 YNRRRYIKEIADKNYMMREFGK---RAAMNAP------IQGSAADLIKMAMIHIYQKMQE 806 Query: 619 -KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 K ++L +HDE++ + + + + + M + +PL A+ K + Sbjct: 807 EKVKSRMILQIHDELIFDVCEDEIDKMTQIVEEGMQNVMK--LKVPLIAQANIGKSW 861 >gi|34581200|ref|ZP_00142680.1| DNA polymerase I (POL I) [Rickettsia sibirica 246] gi|5912320|emb|CAB56103.1| DNA polymerase I [Rickettsia sibirica] gi|28262585|gb|EAA26089.1| DNA polymerase I (POL I) [Rickettsia sibirica 246] Length = 875 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 86/632 (13%), Positives = 184/632 (29%), Gaps = 146/632 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++ L + + + ++ +LK N I ++ + + K + + Sbjct: 375 DIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQKNLFK 431 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 K + +I K + + + + F Y D Sbjct: 432 ----EVLKETWIENIIIASAKIVINFIALYKQTIWELKDNKTFRLYSNID---------- 477 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + ++ + G VD L+ E KL++E+ +L+ + Sbjct: 478 --------LPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTK-FNIG 528 Query: 235 CLEKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + +T +L + + + ++ Sbjct: 529 SPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNT 588 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 ++L + +++ T ++ TGR S QN+P S Sbjct: 589 YTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGN------------ 636 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R IA EG KL+ AD + IE R+L+ +A +AF +D++ Sbjct: 637 -------------QIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIH 683 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + FN+ ++T + R K + G++ Sbjct: 684 TQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS----------- 718 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A + K + ++ V E + Sbjct: 719 -------------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFA- 758 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 +N + GR + + + + R Sbjct: 759 -------------------------SSNGYVTNCFGRKCFVPLIHDKK-----LKQFAER 788 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643 +Q + DI+ M+N K +VL +HDE++ E P + Sbjct: 789 AAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEI 842 Query: 644 A-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++ +M ++ + A +P+ E + Sbjct: 843 ITPIIKKIMENSTNMA--VPIITEIRAGNNWM 872 >gi|84999262|ref|XP_954352.1| DNA polymerase i [Theileria annulata] gi|65305350|emb|CAI73675.1| DNA polymerase i, putative [Theileria annulata] Length = 1786 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 108/712 (15%), Positives = 193/712 (27%), Gaps = 189/712 (26%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVM 53 + +D ET T + L + P + D D V+ Sbjct: 1220 KAVGVDIETTGLDHNTN----------QIRLVQLSVPNQPSVIIDLFKLNTNNPESDNVV 1269 Query: 54 P--------QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 P + LK ++ D V HN F+ L + + T+V ++ Sbjct: 1270 PGRNELIKCEWLKNLFKSKDTVKVFHNGKFDINFL-RVYGFEFE-GPIFDTMVASKLLVA 1327 Query: 106 PS----ALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 L V E L + K ++ + + + Y Sbjct: 1328 SRYISCKLTHVSERYLNIVLDKTQQYSDWSTL-------------------QLFEEQLLY 1368 Query: 161 CKGDVTVTREIFKRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIV 211 D V ++ LE L + + G VD L + Sbjct: 1369 SARDSFVLLPLYVILEHLLKINNLADIASVENKCILATSDMELNGIKVDEDKLRILQDEL 1428 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK 268 E ++ +L S + +++ L E + + T + L + Sbjct: 1429 KQEHQEISNDLYSQLNHSEINLNSQKQVLEKL-QELKIMDRSKKKIISDTSESTL--IRN 1485 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQ 327 ++ I +A+++ L +N R+ LGA GR+S Q Sbjct: 1486 MSNPIISSLREYRKANKALTAFTQKLPNHINPITKRIYPNYNQLGAES-GRFSCDGPNLQ 1544 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 +PR R C +A +G K V+AD + IE R Sbjct: 1545 QVPRD-----------------------------KKFRECFVAPKGSKFVIADFSQIELR 1575 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 + A +A + ++A++ DL+ T + N + +V K++R + K + L + Sbjct: 1576 IAAEIANDPKMIQAYQQNVDLHSLTASILKNKSINEVNKEERQLAKAVNFGLIFGMSING 1635 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + A E T + + Sbjct: 1636 LRMYA--------------------------------------ETGYNLKLTQTEAKEIY 1657 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 ++ + N + + R Sbjct: 1658 TSFFNNFKGILNWHNSVKN------SRPTMVRTLGNRLSVFESFSFT------------- 1698 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYD 623 + VQ S DI E M Sbjct: 1699 ----------------------------RSLNYPVQGTSADITKETMARLVDSVKPLNAK 1730 Query: 624 IVLTVHDEIVCETPDT-DEFNASMLYHLM-TSNPSWAKGLPLKAEGYESKRY 673 I++ VHDEI+ E P+ E ML M S + K +P++A G + Sbjct: 1731 IIICVHDEIILEVPEDNAEKALKMLIDTMVKSGEKYLKKVPVEAMGSIGDSW 1782 >gi|282882006|ref|ZP_06290647.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B] gi|281298036|gb|EFA90491.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B] Length = 885 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 81/633 (12%), Positives = 180/633 (28%), Gaps = 127/633 (20%) Query: 47 CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106 ++ LK E+ + + ++ + VL +D+ + +++ Sbjct: 354 IDYNKDNLSNLKALWEDDSIEKLGYDLKEDIIVL-QYNKIDLK-NYCHDSMIAEYLLNST 411 Query: 107 SAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 + + + + K EE K D N ++ Sbjct: 412 ESNYEIDHLASSYFNKAYKSEEELLGKGVKKKKFQEIDEGDLNSYFSYILNMVYKISPLQ 471 Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + E + + E L + + G DV + + +++ + L+ + Sbjct: 472 MQKIEAE--GMKDLYVNVELPLIEVLANMEIVGIRTDVNILNEIDEKIKERINDLEFNIY 529 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280 + ++L LF + L + T+ +T VL + + + R Sbjct: 530 KD-ADEQFNINSPKQLGQILFEKMDLPVIKKTKTGYSTSADVLEKLRGKSLIIDNILEYR 588 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + S+ ++ L + +N + + TGR S QN+P + Sbjct: 589 -KISKIKNTYIDGLRDVINKKTGRIHSRFNQTVTSTGRISSTEPNLQNIPIKTHEGR--- 644 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R +++SEG LV +D + IE RVLA ++ + + + Sbjct: 645 ----------------------LIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMIN 682 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ T + F+ +V+ + R++ K + + Y GL+ Sbjct: 683 AFADGLDIHRKTASEVFHTPYDEVSDELRSMAKAVNFGIVYGIS---------DYGLS-- 731 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + Sbjct: 732 ---------------------------------QNLNIPRKEAKTYIDNYLGHFQGIKKY 758 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 N++ + R ++ Sbjct: 759 MNDII--------------------------HVGTEKGYVETLLHRRRYIPELKAKNF-- 790 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVC 634 R +Q + DI+ M+ ++L +HDE+V Sbjct: 791 -NIRSFGERIA------LNTPIQGTAADIIKIAMVGVYKELKKKNLKAKLILQIHDELVV 843 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAK--GLPLKA 665 + PD + + + +M A +PL Sbjct: 844 DAPDEE---VAEVCEIMKDVMDNALIMKVPLSV 873 >gi|168493726|ref|ZP_02717869.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06] gi|225853660|ref|YP_002735172.1| DNA polymerase I [Streptococcus pneumoniae JJA] gi|183576083|gb|EDT96611.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06] gi|225723914|gb|ACO19767.1| DNA polymerase I (POL I) [Streptococcus pneumoniae JJA] Length = 877 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 98/669 (14%), Positives = 186/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ +D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCEDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIV 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYMQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + L Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 728 ------ISRKEAKAYIDTYFERFPDIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|5912328|emb|CAB56093.1| DNA polymerase I [Rickettsia rhipicephali] Length = 875 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 86/632 (13%), Positives = 182/632 (28%), Gaps = 146/632 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++ L + + + ++ +LK N I ++ + + K + + Sbjct: 375 DIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQKNLFK 431 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 K + +I K + + + + F Y D Sbjct: 432 ----EVLKETLIENIIIESAKIVINFISLYKQTILELKDNKTFRLYSDID---------- 477 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + ++ + G VD L+ E KL++E+ +L+ + Sbjct: 478 --------LPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTK-FNIG 528 Query: 235 CLEKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + +T +L + + + ++ Sbjct: 529 SPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNT 588 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 ++L + +++ T ++ TGR S QN+P S Sbjct: 589 YTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNIPIRSSEGN------------ 636 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R IA EG KL+ AD + IE R+L+ +A +AF +D++ Sbjct: 637 -------------QIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIH 683 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + FN+ ++T + R K + G++ A + Sbjct: 684 TQTACQIFNLQKHELTSEHRRKAKAINF--------------GIIYGISAFGLAKQLNA- 728 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 K + ++ V E + Sbjct: 729 -----------------------------TNGEASEYIKKYFAEYKGVQEYMEQTKAFA- 758 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 +N + GR + + + + R Sbjct: 759 -------------------------SSNGYVTNFFGRKCFVPLIHDKK-----LKQFAER 788 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643 +Q + DI+ M+N K +VL +HDE++ E P + Sbjct: 789 AAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEI 842 Query: 644 A-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++ +M + S +P+ E + Sbjct: 843 ITPIIKKIMEN--STNMDVPIITEIRAGNNWM 872 >gi|148996437|ref|ZP_01824155.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70] gi|168576933|ref|ZP_02722775.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016] gi|225860073|ref|YP_002741582.1| DNA polymerase I [Streptococcus pneumoniae Taiwan19F-14] gi|298230353|ref|ZP_06964034.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255493|ref|ZP_06979079.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501821|ref|YP_003723761.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|147757012|gb|EDK64051.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70] gi|183577415|gb|EDT97943.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016] gi|225728406|gb|ACO24257.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Taiwan19F-14] gi|298237416|gb|ADI68547.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|327390446|gb|EGE88786.1| DNA polymerase I family protein [Streptococcus pneumoniae GA04375] Length = 877 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 97/669 (14%), Positives = 187/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + G++ ++ Sbjct: 706 AKAVNFGVV--------------YGISDFGLSN--------------------------- 724 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 725 ---NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|157829037|ref|YP_001495279.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933761|ref|YP_001650550.1| DNA polymerase I [Rickettsia rickettsii str. Iowa] gi|5912316|emb|CAB56098.1| DNA polymerase I [Rickettsia rickettsii] gi|157801518|gb|ABV76771.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908848|gb|ABY73144.1| DNA polymerase I [Rickettsia rickettsii str. Iowa] Length = 875 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 86/632 (13%), Positives = 182/632 (28%), Gaps = 146/632 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++ L + + + ++ +LK N I ++ + + K + + Sbjct: 375 DIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDIKAIEDLELMQYALSAGLSQKNLFK 431 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 K + +I K + + + + F Y D Sbjct: 432 ----EVLKETWIENIIIESAKIVINFITLYKQTIWELKDNKTFRLYSNID---------- 477 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + ++ + G VD L+ E KL++E+ +L+ + Sbjct: 478 --------LPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTK-FNIG 528 Query: 235 CLEKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + +T +L + + + ++ Sbjct: 529 SPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNT 588 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 ++L + +++ T ++ TGR S QN+P S Sbjct: 589 YTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGN------------ 636 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R IA EG KL+ AD + IE R+L+ +A +AF +D++ Sbjct: 637 -------------QIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIH 683 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + FN+ ++T + R K + G++ Sbjct: 684 TQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS----------- 718 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A + K + ++ V E + Sbjct: 719 -------------------AFGLAKQLNVTHGEASAYIKKYFAEYKGVQEYMEQTKAFA- 758 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 +N + GR + + + + R Sbjct: 759 -------------------------SSNGYVTNCFGRKCFVPLIHDKK-----LKQFAER 788 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643 +Q + DI+ M+N K +VL +HDE++ E P + Sbjct: 789 AAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEI 842 Query: 644 A-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++ +M + S +P+ E + Sbjct: 843 ITPIIKKIMEN--STNMDVPIITEIRAGNNWM 872 >gi|188586506|ref|YP_001918051.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351193|gb|ACB85463.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF] Length = 930 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 80/634 (12%), Positives = 183/634 (28%), Gaps = 149/634 (23%) Query: 62 ENTDVTIVA-HNSYFERTVLKAC-----FNLDIPIHRWICTLVLARSNGL---PSALKAV 112 E+ +A +N + K ++LD + T ++A P +++ + Sbjct: 414 EDAPKLKIASYNIKRIWHLFKNNTELDLYDLDTNKFLFYDTELMAYLLEPTEAPHSIEDM 473 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + +L + + E + +++ Sbjct: 474 -------MNRYYGQFDLTPYGQDWQAVCERGAILLDLISPLEDILQERNQ------WQLY 520 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 K + E L ++ + RG VD + + +D +++ ++ + + Sbjct: 521 K------NIELPLAFILARMEFRGIKVDARVLTEMEANIDHRLSEISTKIFEIAG-EEFN 573 Query: 233 SRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + T+ +T + L + + + R + Sbjct: 574 LNSPKQLGYILFEKLQLPVVKKTKTGYSTDAKTLETLSHDYEICKLLLDYRQ-LHKLKTT 632 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 L L + ++ T + TGR S QN+P + Sbjct: 633 YLVGLKDLISKTTGKIHTTYNQTITATGRLSSTDPNLQNIPIKLEEGRK----------- 681 Query: 350 ITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 +R + + + AD + IE R+LA ++ + ++AF+ +D+ Sbjct: 682 --------------IRKGFVIQNSDQLFLAADYSQIELRILAHVSEDTNLIQAFQEQQDI 727 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + T A+ F V QVT++ R+ K + + Y GL+ Sbjct: 728 HTQTAAQVFEVESTQVTREMRSHAKAVNFGIVYGIS---------DYGLS---------- 768 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + + + + S V E +++ Sbjct: 769 -------------------------RQLGISRKQAKTYIDNYLTRFSGVKEYMDQIVNQA 803 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 + + + R D+ + Sbjct: 804 K--MNGYVETLYN------------------------RRRNLPDISHRNF---NIRSAAE 834 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--------IVLTVHDEIVCETPDTD 640 R +Q + DI+ + M+ K ++L VHDE++ E Sbjct: 835 RTAINTP------IQGTAADIIKDAMVKVEKELEKQDLLDKAALLLQVHDELILEINKEV 888 Query: 641 EFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + + + +M + +PL + + Sbjct: 889 LSDVATKVKEIMENIIE--LKVPLTVDLKTGPNW 920 >gi|307707929|ref|ZP_07644404.1| DNA polymerase I [Streptococcus mitis NCTC 12261] gi|307615994|gb|EFN95192.1| DNA polymerase I [Streptococcus mitis NCTC 12261] Length = 877 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 97/667 (14%), Positives = 197/667 (29%), Gaps = 148/667 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFN 85 ++ F++ D +L+ ++ + + +A V ++ VL F Sbjct: 333 DLVGFSWSCGD---KLYATDKLELLQEPIFKAFLEKTPLRV-----YDFKKAKVLLNRFG 384 Query: 86 LDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 +D+ + + + + ++ L + GK + + E Sbjct: 385 VDLQ-APAFDSRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIPEREKFL 443 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 R E + E + + ++ EQ L ++ + G V Sbjct: 444 EHLARKIAVLVETEPVLLEKLSENGQLEL-LY-------DMEQPLAFVLAKMEIAGIKVK 495 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256 + ++ KL QE+ L + ++L LF + L L T+ Sbjct: 496 KETLLEMQAENELVIEKLTQEIYELAG-EEFNINSPKQLGVLLFEKLELPLEYTKKTKTG 554 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + P ++ + R ++ + L + + +DG++ ++ Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-LTQ 612 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374 TGR S QN+P +R + E Sbjct: 613 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEREDS 647 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGK 433 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K Sbjct: 648 VLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAK 707 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + G++ ++ Sbjct: 708 AVNFGVV--------------YGISDFGLSN----------------------------- 724 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + + ++ + +E+ + Sbjct: 725 -NLGISRKGAKAYIDTYFERFPGIKNYMDEVVREARD----------------------- 760 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + R D+ + R +Q + DIL Sbjct: 761 ---KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILKIA 808 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 M+ KA ++L VHDEIV E P ++ L M +PL A+ Sbjct: 809 MIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQ--LSVPLIAD 866 Query: 667 GYESKRY 673 E + Sbjct: 867 ENEGATW 873 >gi|194397391|ref|YP_002036753.1| DNA polymerase I [Streptococcus pneumoniae G54] gi|194357058|gb|ACF55506.1| DNA polymerase I [Streptococcus pneumoniae G54] Length = 877 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 97/669 (14%), Positives = 187/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + G++ ++ Sbjct: 706 AKAVNFGVV--------------YGISDFGLSN--------------------------- 724 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 725 ---NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|291007053|ref|ZP_06565026.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] Length = 894 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 104/668 (15%), Positives = 192/668 (28%), Gaps = 133/668 (19%) Query: 23 KYAEDVCVILFAFGFDDHPVELWD---CVHDPVMPQVLKEALENTDVTIVAHNSYFERTV 79 + A D D D + L L + AH+ Sbjct: 338 WSRGSGDLDGLALVTADGAGAFVDARTLTDDDE--RALSAWLADPAFPKAAHDVKGPLHA 395 Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKG 136 + + T + A L + + E+G++ Sbjct: 396 V-RDRGWKLAGLS-SDTALAAYLVRPGQRSFDLPDLVVRYLQRELRAEQGEDDGQLSLLE 453 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + + A + D + R L+ E L + + G Sbjct: 454 DEEQTKAGAAASELVRARAVAELADTLDDELARI--DSTRLLTELELPLLQVLSELEAAG 511 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD L + Q+ + + + ++L+ LF E G+ T+ Sbjct: 512 IAVDADQLAGLGAHFAARVKQAAQDAYGVIGKEI-NLGSPKQLQVVLFDELGMPKTKRTK 570 Query: 257 T---TCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 T T L S + P + +R A+R ++ LV+++ DGR+ TL Sbjct: 571 TGYTTDAEALQSLYEKTEHPFLQHMLEHR-DATRLKTT-VDGLVKSIADDGRIHTTLNQT 628 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 A+ TGR S QN+P + +R + Sbjct: 629 IAA-TGRLSSTEPNLQNIPIRTEEGRR-------------------------IREVFVVG 662 Query: 372 EGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 EG +L+ AD + IE R++A ++G++ ++AF TGEDL+ +R+F V +V + R Sbjct: 663 EGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVASRAFGVPIDEVDHELRR 722 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K M GL+ A Sbjct: 723 RVKAMSY--------------GLAYGLSAFGLAQQ------------------------- 743 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 +A+ + V + ++ + Sbjct: 744 -----LRISTEDAREQMEAYFARFGSVRDYLRDVVDQARK-------------------- 778 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + GR D+ ++ R +Q + DI+ Sbjct: 779 ------DGYTSTILGRRRYLPDLNSDN---RQRRDMAERMALNAP------IQGSAADII 823 Query: 611 AEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ +A ++L VHDE++ E D + L M + +A +PL+ Sbjct: 824 KVAMLDVHEALRPLRSRMLLQVHDELIIEVADGEREEVERLVRERMGAA--YALDVPLEV 881 Query: 666 EGYESKRY 673 + Sbjct: 882 SVGVGGSW 889 >gi|134101936|ref|YP_001107597.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] gi|133914559|emb|CAM04672.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] Length = 895 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 104/668 (15%), Positives = 192/668 (28%), Gaps = 133/668 (19%) Query: 23 KYAEDVCVILFAFGFDDHPVELWD---CVHDPVMPQVLKEALENTDVTIVAHNSYFERTV 79 + A D D D + L L + AH+ Sbjct: 339 WSRGSGDLDGLALVTADGAGAFVDARTLTDDDE--RALSAWLADPAFPKAAHDVKGPLHA 396 Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKG 136 + + T + A L + + E+G++ Sbjct: 397 V-RDRGWKLAGLS-SDTALAAYLVRPGQRSFDLPDLVVRYLQRELRAEQGEDDGQLSLLE 454 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + + A + D + R L+ E L + + G Sbjct: 455 DEEQTKAGAAASELVRARAVAELADTLDDELARI--DSTRLLTELELPLLQVLSELEAAG 512 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD L + Q+ + + + ++L+ LF E G+ T+ Sbjct: 513 IAVDADQLAGLGAHFAARVKQAAQDAYGVIGKEI-NLGSPKQLQVVLFDELGMPKTKRTK 571 Query: 257 T---TCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 T T L S + P + +R A+R ++ LV+++ DGR+ TL Sbjct: 572 TGYTTDAEALQSLYEKTEHPFLQHMLEHR-DATRLKTT-VDGLVKSIADDGRIHTTLNQT 629 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 A+ TGR S QN+P + +R + Sbjct: 630 IAA-TGRLSSTEPNLQNIPIRTEEGRR-------------------------IREVFVVG 663 Query: 372 EGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 EG +L+ AD + IE R++A ++G++ ++AF TGEDL+ +R+F V +V + R Sbjct: 664 EGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVASRAFGVPIDEVDHELRR 723 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K M GL+ A Sbjct: 724 RVKAMSY--------------GLAYGLSAFGLAQQ------------------------- 744 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 +A+ + V + ++ + Sbjct: 745 -----LRISTEDAREQMEAYFARFGSVRDYLRDVVDQARK-------------------- 779 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + GR D+ ++ R +Q + DI+ Sbjct: 780 ------DGYTSTILGRRRYLPDLNSDN---RQRRDMAERMALNAP------IQGSAADII 824 Query: 611 AEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M++ +A ++L VHDE++ E D + L M + +A +PL+ Sbjct: 825 KVAMLDVHEALRPLRSRMLLQVHDELIIEVADGEREEVERLVRERMGAA--YALDVPLEV 882 Query: 666 EGYESKRY 673 + Sbjct: 883 SVGVGGSW 890 >gi|289166948|ref|YP_003445215.1| DNA-directed DNA polymerase [Streptococcus mitis B6] gi|288906513|emb|CBJ21345.1| DNA-directed DNA polymerase [Streptococcus mitis B6] Length = 877 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 96/670 (14%), Positives = 187/670 (27%), Gaps = 154/670 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKAC 83 ++ FA+ D + Q K+ LE T + + ++ VL Sbjct: 333 DLVGFAWSCGDK----LYATDKLELLQEPIFKDFLEKTPLRV------YDFKKAKVLLNR 382 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 F +D+ + + + + Sbjct: 383 FGVDLQ-APAFDSRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGV 432 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGY 197 + P + V + ++L EQ L ++ + G Sbjct: 433 KKAIPEREKFLEHLARKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGI 492 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLT 255 V + ++ KL QE+ L + ++L LF + L L T Sbjct: 493 TVKKETLLEMQAENELVIEKLTQEIYELAG-EEFNINSPKQLGVLLFEKLALPLEYTKKT 551 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 552 KTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD- 609 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P +R + Sbjct: 610 LTQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEW 644 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 645 ENSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRR 704 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + G++ ++ Sbjct: 705 NAKAVNFGVV--------------YGISDFGLSN-------------------------- 724 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + + ++ + +E+ + Sbjct: 725 ----NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD-------------------- 760 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + R D+ + R +Q + DIL Sbjct: 761 ------KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADIL 805 Query: 611 AEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPL 663 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 806 KIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQ--LSVPL 863 Query: 664 KAEGYESKRY 673 A+ E + Sbjct: 864 IADENEGATW 873 >gi|229587139|ref|YP_002845640.1| DNA polymerase I [Rickettsia africae ESF-5] gi|228022189|gb|ACP53897.1| DNA polymerase I [Rickettsia africae ESF-5] Length = 875 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 85/632 (13%), Positives = 184/632 (29%), Gaps = 146/632 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++ L + + + ++ +LK N I ++ + + K + + Sbjct: 375 DIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQKNLFK 431 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 K + +I K + + + + F Y D Sbjct: 432 ----EVLKEPWIENIIIESAKIVINFIALYKQTIWELKDNKTFRLYSNID---------- 477 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + ++ + G VD L+ E KL++E+ +L+ + Sbjct: 478 --------LPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTK-FNIG 528 Query: 235 CLEKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + +T +L + + + ++ Sbjct: 529 SPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNT 588 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 ++L + +++ T ++ TGR S QN+P S Sbjct: 589 YTDSLPKQIDNITHKVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGN------------ 636 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R IA EG KL+ AD + IE R+L+ +A +AF +D++ Sbjct: 637 -------------QIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIH 683 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + FN+ ++T + R K + G++ Sbjct: 684 TQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS----------- 718 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A + K + ++ V + + Sbjct: 719 -------------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQKYMEQTKAFA- 758 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 +N + GR + + + + R Sbjct: 759 -------------------------SSNGYVTNCFGRKCFVPLIHDKK-----LKQFAER 788 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643 +Q + DI+ M+N K +VL +HDE++ E P + Sbjct: 789 AAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEI 842 Query: 644 A-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++ +M ++ + A +P+ E + Sbjct: 843 ITPIIKKIMENSTNMA--VPIITEIRAGNNWM 872 >gi|5912324|emb|CAB56079.1| DNA polymerase I [Rickettsia montanensis] Length = 875 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 87/630 (13%), Positives = 180/630 (28%), Gaps = 146/630 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 + L + + + ++ +LK N I ++ + + K + + Sbjct: 377 IFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQKNLFK-- 431 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 K +I K + + + + F Y D Sbjct: 432 --EVLKETLIDNIIIESAKIVINFISLYKQTILELKDNKTFRLYSNID------------ 477 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + ++ + G VD L+ E KL++E+ +L+ + Sbjct: 478 ------LPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTK-FNIGSP 530 Query: 237 EKLKTWLFLETGLHLED---LT--ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF + L T +T +L + + + ++ Sbjct: 531 KQLGEILFEKMQLPFGKASAKTSSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYT 590 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 ++L + +++ T ++ TGR S QN+P S Sbjct: 591 DSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGN-------------- 636 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R IA EG KL+ AD + IE R+L+ +A +AF +D++ Sbjct: 637 -----------QIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQ 685 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + FN+ ++T + R K + G++ Sbjct: 686 TACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS------------- 718 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 A + K + ++ V E + Sbjct: 719 -----------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFA--- 758 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 +N + GR + + + + R Sbjct: 759 -----------------------SSNGYVTNFFGRKCFVPLIHDKK-----LKQLAERAA 790 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ M+N K +VL +HDE++ E P + Sbjct: 791 INAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIIT 844 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++ +M + S +P+ E + Sbjct: 845 PIIKKIMEN--STNMDVPIITEIRAGNNWM 872 >gi|311895440|dbj|BAJ27848.1| putative DNA polymerase I [Kitasatospora setae KM-6054] Length = 895 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 92/678 (13%), Positives = 172/678 (25%), Gaps = 152/678 (22%) Query: 23 KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82 V A + L + H + V++A Sbjct: 338 WALGSGEVEQIALATGTAAAWFDPAALAEADDRAFTAWLADPKRPKALHIAK---QVMRA 394 Query: 83 CFNLDIPIHRW-ICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGET 138 T + A L + E L Sbjct: 395 FAERGWSFAGVTADTALAAYLEKPGRRAFTLDVLAEEY------------LGRSLAPATA 442 Query: 139 HECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFKRLEPLS----------SKEQELWY 187 + E G ++ + E + Sbjct: 443 QAETGQLSFD-ADEPDPTAGAQALMTRARAVHDLAGLFDTRLAEVGAVELFHDMELPIAE 501 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 L + G D L E + +E + + ++L+ LF + Sbjct: 502 LLARMERHGIAADREWLRGLEAQFAAEIQRCVEEAHAAAG-REFNLGSPKQLQEILFGDL 560 Query: 248 GLHLEDLTET---TCQRVLSSNK-KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 GL +T T L+ + T + + ++ + L++ ++ GR Sbjct: 561 GLPKTKKIKTGYTTDADALTWLATQTTNELPVILLRHRDQAKLRTT-VEGLLKTVSPQGR 619 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + T + A+ TGR S QN+P + Sbjct: 620 IHTTFNQMVAA-TGRLSSQDPNLQNIPVRTEEGRA------------------------- 653 Query: 364 VRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG L+ AD + IE R++A ++ ++ ++AF +GEDL+ T ++ F VAPA Sbjct: 654 IRRAFVVGEGYETLLTADYSQIELRIMAHLSEDEALIEAFTSGEDLHTTVASQVFAVAPA 713 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 V + R K M GL+ + + A Sbjct: 714 DVDAEMRRKIKAMSY--------------GLAYGLSAYGLSQQLGIKPA----------- 748 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + + + ++ V + + + + Sbjct: 749 -------------------EAQGLMDTYFERFGGVRDYLHNVVEEAR------------- 776 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 GR D+ ++ R + Sbjct: 777 -------------AVGYTETLLGRRRYLPDLTSDN---RQRREMAERMALNAP------I 814 Query: 603 QAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655 Q + DI+ M+ +A ++L VHDEIV E + L M Sbjct: 815 QGSAADIVKIAMLRVDEALRTAGLTSRMLLQVHDEIVLEVAPGERERVEALVREQMAGA- 873 Query: 656 SWAKGLPLKAEGYESKRY 673 + PL + Sbjct: 874 -YPLRAPLDVSVGAGADW 890 >gi|297624586|ref|YP_003706020.1| DNA polymerase I [Truepera radiovictrix DSM 17093] gi|297165766|gb|ADI15477.1| DNA polymerase I [Truepera radiovictrix DSM 17093] Length = 867 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 103/634 (16%), Positives = 184/634 (29%), Gaps = 156/634 (24%) Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLPSAL- 109 P+ E L + +V H + + L L++ L++A +A Sbjct: 372 PERALELLRSEEVL---HAA--DAKALAVYAQRCGLEVRPG--DDPLLMAYVLDPSAADP 424 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + A R R Sbjct: 425 ETLTRRYGTP--------AWGATAVARAVATAELSRTLRPKL-------------AGALR 463 Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 ++ E+ + + + G +D A ++ + + L++E+ L Sbjct: 464 RLY------EEIERPVAEVLAHMEVTGVRLDTAALAAQSESLAEKLAALEREVRELAGNP 517 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + L T +T L K P + R ++ Sbjct: 518 NLNLNSRDQLAELLFEKLELQAGRKTSTGKRSTAVSALEPLKDAHPVVPLILEYR-ELAK 576 Query: 286 SAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 L+ L +N GRL T A+ TGR S QN+P + E Sbjct: 577 LKSTYLDPLPRLINPHTGRLHTTFNQ-TATATGRLSSANPNLQNIPVRTAVGRE------ 629 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +R +A EG L+VAD + IE R+LA + GE+ ++ F Sbjct: 630 -------------------IRRAFVADEGATLLVADYSQIELRILAHITGEEALVETFRR 670 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GED++ T A+ F V P VT + R + KV+ G++ Sbjct: 671 GEDIHRRTAAQIFGVPPEAVTPEGRRVAKVIN--------------FGVLYGMS------ 710 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 A E + +++ + + +V +E Sbjct: 711 ------------------------AHRLARELSIPYAEADAFIRSYFEGYPKVRAYIDET 746 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 + GR D+ ++ Sbjct: 747 LAFARD--------------------------KGYVETLFGRRRPIPDIRSSN---RNAR 777 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYDIVLTVHDEIVC-ETPDT 639 R +Q DI+ M+ G ++L VHDE+V Sbjct: 778 EYAERTAYNMP------IQGTQADIVKLAMVRLLPRLKAHGAKLLLQVHDELVLEAPEGA 831 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E A+ + +M +A +PL AE + + Sbjct: 832 AEAVAAEVKAVMEGA--FAMRVPLVAEVGRGRNW 863 >gi|307326068|ref|ZP_07605266.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113] gi|306888290|gb|EFN19278.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113] Length = 920 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 101/687 (14%), Positives = 181/687 (26%), Gaps = 142/687 (20%) Query: 8 FETRSPIDLTKCGICKYA-EDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTD 65 E+ L + +A V A P +D + E + + D Sbjct: 350 LESHRDAPLGLATVDTWALGSGSVSEIALATGSGPAAFFDPSQLDEADERTFAEWIADPD 409 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQK 122 V HN+ V + T + A L A+ Sbjct: 410 RPKVLHNAKGIMRVFAEH-GWSVAGVTM-DTALAAYLVKPGRRSFELDALSVEY------ 461 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR--EIFKRLEPLS- 179 G+EL ++ D+ + Sbjct: 462 --LGRELSPAVAADSGQLAFGADDEAERDALMIKART--ILDLGEAFGGRLKDVGAAGLL 517 Query: 180 -SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 E + L + G D + Q QE + + ++ Sbjct: 518 HDMELPVSELLARMERSGIAADRGWLERMEQQFAAAVQHAVQEAHAAVGH-EFNLGSPKQ 576 Query: 239 LKTWLFLETGLHLEDLTETT---CQRVLSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTL 294 L+ LF E GL T+T L+ + + +R + L Sbjct: 577 LQEVLFGELGLPKTKKTKTGYTTDADALAWLAGQTDHELPVIMLRHREQARLRST-VEGL 635 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ + R+ T A+ TGR S QN+P + Sbjct: 636 IKTIAPGSRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEGRA---------------- 678 Query: 355 DPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R + +G + L+ AD + IE RV+A ++ ++ ++AF +GEDL+ T Sbjct: 679 ---------IRRGFVVGDGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVA 729 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 ++ F+V + V + R K M L GL+ + Sbjct: 730 SQVFSVDKSAVDPEMRRKIKAMSYGL--------------AYGLSAFGLSQQ-------- 767 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 ++ + + ++ V + L + E+ Sbjct: 768 ----------------------LGITPDEARKLMENFFERFGGVRDY---LQRVVEEARA 802 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 G GR D+ ++ R Sbjct: 803 TGYTETML-----------------------GRRRYLPDLTSDN---RQRREMAERMALN 836 Query: 594 GGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML 647 +Q + DI+ M+ K ++L VHDEIV E + L Sbjct: 837 AP------IQGTAADIVKIAMLKVDAALTGEKLSSRMLLQVHDEIVLEIAPGERERVEEL 890 Query: 648 Y-HLMTSNPSWAKGLPLKAEGYESKRY 673 MT + PL + Sbjct: 891 VRREMTGA--FGLSAPLDVSVGSGSDW 915 >gi|315271287|gb|ACO46469.2| putative DNA-directed DNA polymerase (DNA polymerase I) [Deinococcus deserti VCD115] Length = 923 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 92/592 (15%), Positives = 154/592 (26%), Gaps = 148/592 (25%) Query: 94 ICTLVLARSNGLPSA-LKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 L+ A + + V L + G+ R+ P + Sbjct: 464 DDPLLHAYLLDPSNTTMATVTPRYLGVPWPADAAGRA---------AVTARLLRDLPP-Q 513 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 Y E+ L + + RG +D L Sbjct: 514 LDEARTKLYAG------------------MEKPLAAVLTRMEVRGVRLDSEYIRGLAGAA 555 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSN 266 L+ E+ S R +L+T L+ E GL T+ +T L Sbjct: 556 AARLAALETEIHQHVG-REFSVRSPSQLETVLYDELGLASGRKTKLTGKRSTAVAALEPL 614 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + P V R + L+ L +N T A TGR S Sbjct: 615 RDEHPVIPLVLEFR-ELDKLRGTYLDPLPSLVNPRTGRLHTTFAQTAVATGRLSSLNPNL 673 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P S E +R IA +G L+ AD + IE Sbjct: 674 QNIPIRSEMGRE-------------------------IRKGFIADKGYCLISADYSQIEL 708 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA +A + +AF G D++ T A+ + VT QR K + Sbjct: 709 RLLAHIADDPLMQQAFREGADIHRRTAAQVLGLEEQSVTSTQRRAAKTVNF--------- 759 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ + E Sbjct: 760 -----GVLYGMS------------------------------AHRLSNELGISYVEAAGF 784 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + + + + + + E G GR Sbjct: 785 IETYFNTYPGIRGY---IDRTLEFGRTQGYVETMY-----------------------GR 818 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GY 622 ++ R +Q + DI+ M+ + G Sbjct: 819 RRYVPELAATN---RNVREAGERLAYNMP------IQGTAADIIKHAMIRLDRELEALGG 869 Query: 623 DIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + + L +M +PL E + Sbjct: 870 RLLLQVHDELLIEAPENRAEDVARLTREVMEGAAK--LSVPLAVEVGTGPNW 919 >gi|226356483|ref|YP_002786223.1| DNA polymerase I [Deinococcus deserti VCD115] Length = 926 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 92/592 (15%), Positives = 154/592 (26%), Gaps = 148/592 (25%) Query: 94 ICTLVLARSNGLPSA-LKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 L+ A + + V L + G+ R+ P + Sbjct: 467 DDPLLHAYLLDPSNTTMATVTPRYLGVPWPADAAGRA---------AVTARLLRDLPP-Q 516 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 Y E+ L + + RG +D L Sbjct: 517 LDEARTKLYAG------------------MEKPLAAVLTRMEVRGVRLDSEYIRGLAGAA 558 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSN 266 L+ E+ S R +L+T L+ E GL T+ +T L Sbjct: 559 AARLAALETEIHQHVG-REFSVRSPSQLETVLYDELGLASGRKTKLTGKRSTAVAALEPL 617 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + P V R + L+ L +N T A TGR S Sbjct: 618 RDEHPVIPLVLEFR-ELDKLRGTYLDPLPSLVNPRTGRLHTTFAQTAVATGRLSSLNPNL 676 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P S E +R IA +G L+ AD + IE Sbjct: 677 QNIPIRSEMGRE-------------------------IRKGFIADKGYCLISADYSQIEL 711 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA +A + +AF G D++ T A+ + VT QR K + Sbjct: 712 RLLAHIADDPLMQQAFREGADIHRRTAAQVLGLEEQSVTSTQRRAAKTVNF--------- 762 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G++ + E Sbjct: 763 -----GVLYGMS------------------------------AHRLSNELGISYVEAAGF 787 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + + + + + + E G GR Sbjct: 788 IETYFNTYPGIRGY---IDRTLEFGRTQGYVETMY-----------------------GR 821 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GY 622 ++ R +Q + DI+ M+ + G Sbjct: 822 RRYVPELAATN---RNVREAGERLAYNMP------IQGTAADIIKHAMIRLDRELEALGG 872 Query: 623 DIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + + L +M +PL E + Sbjct: 873 RLLLQVHDELLIEAPENRAEDVARLTREVMEGAAK--LSVPLAVEVGTGPNW 922 >gi|254820981|ref|ZP_05225982.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950] Length = 908 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 101/673 (15%), Positives = 195/673 (28%), Gaps = 146/673 (21%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKAC 83 A D A D D + L L + H + L Sbjct: 353 AYDADATALAIVSADGEGRYIDTATLDPEDEAALASWLADPGPPKALHEAK-----LAMH 407 Query: 84 FNLDIPIHRWI------CTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARF 133 D+ W T + A +L + L+ + ++ ++ Sbjct: 408 ---DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLRRELRAENPEQQQLSLL 464 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193 + + + A + D + R L + + + Sbjct: 465 DDTDGTDDQAVQTLLLRAVAVLDLAD--ALDEELARINSTSLLSGME--LPVQRVLAGME 520 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 + G VD+ L L + ++ + + ++L+ LF E + Sbjct: 521 NAGIAVDLELLTELQSDFAHLIRDAAEAAYAVIGKQI-NLGSPKQLQAVLFDELEMPKTK 579 Query: 254 LTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 T+T T L S P + +R A+R V ++ L+ ++ SDGR+ T Sbjct: 580 RTKTGYTTDADALQSLFDKTGHPFLQHLLAHR-DATRLKVT-VDGLLNSVASDGRIHTTF 637 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + + +R Sbjct: 638 NQTIAA-TGRLSSTEPNLQNIPIRTEAGRR-------------------------IRDAF 671 Query: 369 IASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + +G +L+ AD + IE R++A ++ ++ ++AF TGEDL+ +R+F V +VT + Sbjct: 672 VVGDGYSELMTADYSQIEMRIMAHLSKDEGLIEAFNTGEDLHSFVASRAFGVPIEEVTAE 731 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K M L GL+ + +K Sbjct: 732 LRRRVKAMSYGL--------------AYGLSAYGLSAQLKI------------------- 758 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + + + + V + + + + Sbjct: 759 -----------STEEAKDQMEQYFARFGGVRDYLMAVVEQARK----------------- 790 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + GR ++ ++ R +Q + Sbjct: 791 ---------DGYTSTVFGRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAA 832 Query: 608 DILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKG 660 DI+ M+ KA I+L VHDE++ E + L M + Sbjct: 833 DIIKVAMIETDKAIKDAGLSSRILLQVHDELLFEVAAGEREQLEALARDKMGGA--YPLD 890 Query: 661 LPLKAEGYESKRY 673 +PL+ + + Sbjct: 891 VPLEVSVGYGRSW 903 >gi|33520055|ref|NP_878887.1| DNA polymerase I [Candidatus Blochmannia floridanus] gi|33504401|emb|CAD83294.1| DNA polymerase I [Candidatus Blochmannia floridanus] Length = 943 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 99/680 (14%), Positives = 203/680 (29%), Gaps = 147/680 (21%) Query: 28 VCVILFAFGFDD---HPVELWDCVHDPVMPQV---------------LKEALENTDVTIV 69 ++ + + ++ +P L+ LEN V + Sbjct: 373 ANILGLCLSLYNIYINQYIYIPISNNIQIPNQYNNKNYLSLKNVLLNLQPILENPAVVKI 432 Query: 70 AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129 N F ++LK N+++ + ++ + + + L K L Sbjct: 433 GQNMKFNYSLLKRH-NINLS-GKIFDVILEFYILYGTTNYQNIKRFLN----KETFNSIL 486 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---------- 179 + + + K ++E+ Y + ++ + L P Sbjct: 487 NFQQSYDNYNNYIVKEIKNIYQESL-----YAIQLILAIFDLHQILWPQLYSNDKLKKIF 541 Query: 180 -SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 E L + I G +D L + + ++V L + L + +++ Sbjct: 542 QEIEIPLISILAHIESYGVLIDKTLLCSYSMELNVHLNTLQNQAYQLAGTS-FNLDSIKQ 600 Query: 239 LKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 L+ L+ + L + T + T + VL P + R S+ N L Sbjct: 601 LQEILYKKQKLPILKKTPSGSPSTNEEVLKKLSHKYPIPKIILKYR-SLSKLKSTYTNKL 659 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + +N++ T + TGR S QN+P + + Sbjct: 660 ISMVNTESNRIHTSYNQTRTATGRLSSANPNLQNIPNRNHDGRK---------------- 703 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R IA +V AD + IE R++A ++ + + F +G+D++ TT + Sbjct: 704 ---------IRQAFIAPSHSVIVSADYSQIELRIMAHLSRDFKLINDFLSGKDIHTTTAS 754 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 F + VT +QR K + L Y A + L++ + + + Sbjct: 755 EIFVTSLNLVTNEQRHQAKTINFGLIYGMSA-----FGLSKQLSVTCYEAQKYVDRYFQR 809 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + + + +++N ++ G +S+ +A Sbjct: 810 YPGVMQYIQHIKDNVYKYGYVSTLEGRKLYLP-----NIYSKNLSKKKGAERAAINAPMQ 864 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 G A K+ + + Y K + Sbjct: 865 GSAADIIKKAMISINYWLKQDDI------------------------------------- 887 Query: 595 GKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTS 653 VQ M+ + VHDE+V E + A + LM Sbjct: 888 ------PVQ----------MI----------MQVHDELVFEVQNNFIDTAIKQIKKLMEE 921 Query: 654 NPSWAKGLPLKAEGYESKRY 673 + +PLK + K + Sbjct: 922 C--FILDVPLKVDIGVGKNW 939 >gi|311068878|ref|YP_003973801.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942] gi|310869395|gb|ADP32870.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942] Length = 787 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 98/720 (13%), Positives = 201/720 (27%), Gaps = 150/720 (20%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV---ELWDCVHDPV------- 52 + +D ET G+ + + + F+ V H Sbjct: 148 EVALDTETT--------GVEWWD---RTVGLSLTFEFGDVEENFYIPYGHTSDHEQLTRG 196 Query: 53 -MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + + LK LE +V HNS F+ +L + I + + T++ L Sbjct: 197 YVMKKLKPHLEKKGTKLVLHNSKFDSHMLLK-DGITIRNNIYFDTMIAHSVLNENDEKGL 255 Query: 110 KAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 KA+ K EL + E+ L Y D Sbjct: 256 KAIATKYGRFFGFEDKSMSFGELFS-----------NKPEAFYSNESMELCTFYACKDTH 304 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVER 215 + +++K + K+ +L+ + G+ +D + A + E Sbjct: 305 LCLKLYKWQLSMMKKQPKLYDVYFNYEQPLTPAVLAMEETGFEIDFSFADMYKTELQAEV 364 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275 + L+Q++ + +L L+ E L + L K Sbjct: 365 SDLEQKMTRRFG--EINLNSPAQLSALLYDELKLPDISGKRKADAKTLQKLVKHESDLKL 422 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + R ++ + L E +N + G+L + A+ T R++ QNLP + Sbjct: 423 ILEYR-DLNKLLTTYVEPLPEKVNKNTGKLHSSFNQS-ATVTSRFASKDPNLQNLPPKA- 479 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 R ++A +G + D + IE R LA M+G Sbjct: 480 ------------------------------RKLIVAPKGYLIFGIDYSQIEPRTLAHMSG 509 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + DLY + ++ F + + T Sbjct: 510 DAGLQYPYLNNIDLYASLASKIFKLPYEAC-----------------------LEADGET 546 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 P + P A ++ + + Sbjct: 547 Y--------KKAGLPKHPRKMMKVGLLAVMYGITVPSLAESLGISVPEAQKFMDDFYSSY 598 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDV---PLVYMKKDKNNLILMLPSGRSLVYR 571 ++ + ++T + ++R ++ + ++ GR Sbjct: 599 PEMTAWMAKQVAHADET--GYVETMQGRKRRFIGHTVIAKHYHALHAKVVNILGRE--PE 654 Query: 572 DVGNNRSYLNTTTRQLTREYTY---GGKLTENIVQAVSRDILAEGMMNATK------AGY 622 ++ N + Y I+Q + +L + M+ AG+ Sbjct: 655 NIWREPLPRNLKKQYWEVNKDYQRVARMSVNAIIQGSAALMLKKAMIAVNAHLERKGAGW 714 Query: 623 DIVLTVHDEIVCETPDT--------DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++ T+HDE++ P+ E + +PLK + R+ Sbjct: 715 KMMATIHDELLFLIPEAVTPEEIIEIENIMKDVVK---------LDVPLKVDTEVMIRWG 765 >gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo] gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis] Length = 1613 Score = 273 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 112/703 (15%), Positives = 205/703 (29%), Gaps = 180/703 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--VMPQ--VL 57 +D ET + ED + L D P + D P + + L Sbjct: 1057 KLCTLDIETTGLN---------HRED-RIRLLQISTPDQPSVVIDVFKVPVPTLKECTWL 1106 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-----ALKAV 112 + L + V V HN F+ L ++ T++ A+ L V Sbjct: 1107 VKLLGSQAV-KVLHNGKFDINFLS-HNGFNVK-GPIFDTMIAAKLLSATRFNWSCKLGHV 1163 Query: 113 GE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 E L + K ++ + + Y D V + Sbjct: 1164 AERYLNIVLDKSQQFSDW-------------------TLDPLFEEQVIYASRDTAVLLPL 1204 Query: 172 FKRLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L+ E + + G VD+ +L +D E + L Sbjct: 1205 YFILQEKLKAERLDMIADIENKCVLAVCQMEQNGIKVDLDKLKSLQAALDKENETAMKHL 1264 Query: 223 ESLTY---GLVSSSRCLEKLKTWLFLETGLHLEDLT--ETTCQRVLSSNKKLTPQAIQVF 277 + ++ L + + + T +R LS + AIQ Sbjct: 1265 GDTLGVSSNPNFNYNSQRQILQALQQQKVMDKTRRGLIQDTSERTLS--RNTYHPAIQAL 1322 Query: 278 NNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + +++ + ++S GR+ + +GA GR+S Q +PR S Sbjct: 1323 REYRKTNKAVTAFTEKIPNHIDSATGRIYPNINQIGAES-GRFSCDNPNLQQIPRDS--- 1378 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 R C IA +G KLV+AD + IE R+ A +A ++ Sbjct: 1379 --------------------------RFRECFIADKGNKLVIADFSQIELRIAADIAEDR 1412 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++A+ +GEDL+ T + N ++VTK++R + K + L + F+ A Sbjct: 1413 RMIEAYNSGEDLHSLTASLVKNKPISEVTKEERQLAKAVNFGLIFGMSLAGFRNYA---- 1468 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 E + A + ++ + +S Sbjct: 1469 ----------------------------------ESCYGVVLSVPAAREIYDSFFKSYSG 1494 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 ++ + A ++ R Sbjct: 1495 ITAWHERMKAA------KPISVRTLSNRLSVFDQFSFT---------------------- 1526 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYDIVLTVHDEI 632 + VQ S DI E M ++L +HDEI Sbjct: 1527 -------------------RSLNYPVQGTSADITKEAMALLVDRVADISGKMILCIHDEI 1567 Query: 633 VCETPDT-DEFNASMLYHLMTSNP-SWAKGLPLKAEGYESKRY 673 + E P++ +L M + + + +P KA G + Sbjct: 1568 ILEVPESNANKALEVLIETMETAGNKFLRYVPCKAMGSIGDSW 1610 >gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506] gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506] Length = 597 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 119/706 (16%), Positives = 212/706 (30%), Gaps = 174/706 (24%) Query: 1 MA--TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL 57 M + ID ET LT+ + L HPV + D L Sbjct: 32 MKARVIGIDTETTGLDPLTE----------RIRLIQIAAPQHPVIIVDLAALADSELSPL 81 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 K L N+ V N F+ VL+ L P + ++ ++ ++L Sbjct: 82 KALL-NSSALKVFQNGKFDWQVLEMA-GLR-PSGPFFDVMLASQVLRSGLKKDHDLQSLT 138 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 ++ K L ++ + EY D V ++ RL Sbjct: 139 FEFLGIKLDKSL---------------QSSNFAGKLSASQLEYAALDAAVLLKLRARLHS 183 Query: 178 LS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--- 225 E + G +DV H + + + ++ EL Sbjct: 184 KLRSAGLLETAKIEFAAMPAVAQMELNGMLLDVEQWHLVGEELKAQKQATLVELVKAGLK 243 Query: 226 -----------TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 + R ++ + L + + ++T + L + P Sbjct: 244 PAPSAQLSLFPDMVETINPRSSVQVLSAL-QALNIPI----KSTSKSELIPIARQYPVIQ 298 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + N R + + L + ++ GR+ + + GA R+GR+S QN+PR Sbjct: 299 LLLNYR-KLASLCSNFAEALPKHIHQITGRIHPSYRQCGA-RSGRFSCKQPNLQNVPRN- 355 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +R+C IA G +++ AD + IE R++A ++ Sbjct: 356 -------------------------CTVKGMRACFIAPPGYQIIKADYSQIELRIVAEIS 390 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G+ L A+ GEDL+ T + +VT + R I K + L Y GA Q A Sbjct: 391 GDAKMLDAYVKGEDLHTLTASLITGKLLEEVTTEDRRIAKSVNFGLIYGMGAAKLQAYA- 449 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 E + L + +K + Q Sbjct: 450 -------------------------------------EEKYDVLLTLEEAKEFRKRFFQA 472 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 +S V + + + +D+ Sbjct: 473 YSGVKRWHDSIRRTV----------------------------------------YVKDI 492 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVH 629 R+ R + +L + VQ S D+L + K G ++ VH Sbjct: 493 KQIRTIGGRRRRWAKKPRL--SELLNHPVQGTSADMLKVAIARLFKLLPKTGAKLIAVVH 550 Query: 630 DEIVCETPDTDEFNAS-MLYHLMTSNPSWAK-GLPLKAEGYESKRY 673 DEI+ E P T S +L +M +P++ E + + Sbjct: 551 DEILLECPQTTLKRTSCILKKVMVEAGELYLQQVPVEVEVKIASSW 596 >gi|304360711|ref|YP_003856842.1| putative DNA polymerase [Clostridium phage phiCTP1] gi|302495570|gb|ADL40350.1| putative DNA polymerase [Clostridium phage phiCTP1] Length = 765 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 106/746 (14%), Positives = 218/746 (29%), Gaps = 147/746 (19%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP-QVLKEALENT 64 +D ET D + H M LK+ L Sbjct: 81 LDTETTGLN----------VVDDKIAGVNLYTPGEKGIYVPLNHVSYMTGAKLKDQLPLD 130 Query: 65 DVTI-VAH---------NSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112 V + N++F+ VL ++ I + T + A P LK + Sbjct: 131 VVKKYIMQLENTKLDFSNAHFDLQVLYWQMGIN-NIKAYWDTQLAANLLNENEPHGLKYL 189 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 K ++ K+L R P + + Y D ++ E+ Sbjct: 190 --YEKYVKKEDTNSKQLATF--------GTLFRGIPFTKIPLDIAYLYAGKDPKMSYELA 239 Query: 173 KRLEPLSS---------KEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVD 212 + + +++ + I G +D+ L L+ Sbjct: 240 EFQRKYLNNTDADVVKRHLDDVYRVMIDIEMPTVPAVLDMEIKGIKLDLDLNKKLSAKYR 299 Query: 213 VERTKLDQELESLT-----YGLVS---------------SSRCLEKLKTWLFLETGLHLE 252 ++ +++++L+ + ++L + + GL Sbjct: 300 QKKAEVEEKLKIEFNKYDKEFKEFKIKHPDLASRLSNPINISSPKQLGIFFYDMLGLKPV 359 Query: 253 DLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQ 309 D + T +L P A + R + ++ L ++ G++ T Sbjct: 360 DREKPRGTGADILGKF--DVPVAKLILEYR-ELDKLLGTYIDKLPTVLSKRTGKIHCTFN 416 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 G + TGR+S QN+P ++ +R I Sbjct: 417 QYG-TVTGRFSSDSPNLQNIPSHNKD----------------------------IRKMFI 447 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV----- 424 +G L+ D + E R LA M+G++ +KA++ G+D+Y T + + V + Sbjct: 448 PDDGNILIGGDYSQQEPRSLAHMSGDEKMIKAYKNGKDIYATIASYVYKVPYEECLEFNP 507 Query: 425 -------TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 K +R+ K + L + Y G + + LNL + + Sbjct: 508 DGTTNTIGKQRRSNLKGVVLGIIYGRGVNSIAE-----KLNLTKKEAQSIIDEFFTLFPK 562 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 + F E G R++ ++ E + T +N Sbjct: 563 VKQFTEDSIRMARELGYVTTLSGR---------RRRLPDINLPRYEFKYKDKSTSDNFNP 613 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGR---SLVYRDVGNNRSYLNTTTRQLTREYTYG 594 + + + ML R + R+ + Sbjct: 614 FFDTADDVENDEVPEYVQLSYTAMLEKSRFDKKRKNVILSKARTEGISIKNNTGLIAQAE 673 Query: 595 GKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLY 648 + + +Q + D+ M+ + GY +++ VHDEI+ + P + Sbjct: 674 RQCVNSRIQGSAADMTKIAMIALHNNKRLKELGYCMLIQVHDEIIGQCPIDVVKEVKPIL 733 Query: 649 H-LMTSNPSWAKGLPLKAEGYESKRY 673 M + +P+ + +K + Sbjct: 734 ESCMLNAVKLV--VPMSVDIDITKCW 757 >gi|153765|gb|AAA26954.1| DNA polymerase I [Streptococcus pneumoniae] Length = 877 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 97/669 (14%), Positives = 186/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCGDQ----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIV 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + L Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + + + +Q + DIL Sbjct: 761 -----KGYVETLFKRRRELPDINSRNFNIRGFAEA---------TAINSPIQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|166154707|ref|YP_001654825.1| DNA polymerase I [Chlamydia trachomatis 434/Bu] gi|166155582|ref|YP_001653837.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335980|ref|ZP_07224224.1| DNA polymerase I [Chlamydia trachomatis L2tet1] gi|165930695|emb|CAP04192.1| DNA polymerase I [Chlamydia trachomatis 434/Bu] gi|165931570|emb|CAP07146.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 866 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 106/660 (16%), Positives = 204/660 (30%), Gaps = 138/660 (20%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 + A + V + + +LK+ + + S + L +D+ Sbjct: 327 QLHGVALA-GANQVFYIEVSGVQEI-ALLKDFFADKATQFFGYRSKRDNHAL-RNSGIDV 383 Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 + LVLA L + G + + ME G A F E Sbjct: 384 HVTA--D-LVLA------EHLVSGGAKISFQTLLMESGHIQEAVFFSKEWGAGSLPVQSL 434 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202 + FG + + + +F +LE + EQ L + + G +D Sbjct: 435 PRD-PAQYFGMFASKLLAIKNYLFVKLEEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQ 493 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262 L++ + E + QE+ LT + + ++L L+ G+ D ++T V Sbjct: 494 GLAVLDRDLTKELEECSQEIYDLTGC-EFNIKSPKQLSDILYQRLGIEPVDKAKSTKAEV 552 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSG 321 L + + ++ R + + L + +N+ R+ T +G + TGR S Sbjct: 553 LEALEDRHEIIPKILMFR-ATEKMLSTYVRALPKQINAGTQRIHPTFNQVG-TVTGRLSC 610 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVAD 380 QN+P S +R + + AD Sbjct: 611 QDPNLQNIPVRSERGR-------------------------SLREAFRVKKDNDYFLAAD 645 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R LA ++ ++ +AF +GED++ T ++ FNV QVTK +R K + Sbjct: 646 YSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQERYQAKAVN---- 701 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 G + + Sbjct: 702 ----------FGLVYG------------------------------QQAYGLSKILKISV 721 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + + A+ ++ +E + Q EQ +N K Sbjct: 722 SEAQGLMDAYFARYPLAAEF---ITQTIEQASKNQKVTTML------------------- 759 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 GR + D ++ G +Q + +++ M+N + Sbjct: 760 ----GRERILSDWESSPGAR----------AASGRLAVNTRIQGSAAELIKLAMLNISDE 805 Query: 621 ------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L +HDE++ E P + S++ M S +PL K + Sbjct: 806 MRSRGLKSRLLLQIHDELLFEVPAEELEEMRSLVQEKMESAME--LSVPLVVNVLIGKNW 863 >gi|148985374|ref|ZP_01818579.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71] gi|147922332|gb|EDK73452.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71] gi|301799217|emb|CBW31733.1| DNA polymerase I [Streptococcus pneumoniae OXC141] Length = 877 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 97/669 (14%), Positives = 187/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLVVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + G++ ++ Sbjct: 706 AKAVNFGVV--------------YGISDFGLSN--------------------------- 724 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 725 ---NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|291531643|emb|CBK97228.1| DNA polymerase I [Eubacterium siraeum 70/3] Length = 829 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 84/593 (14%), Positives = 166/593 (27%), Gaps = 149/593 (25%) Query: 94 ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + A +L + + + K I + C Sbjct: 369 FDTTLAAYLADPDSNDYSLSRLCAQYGVPEGNSIQEKS-ITVAALNDILNCKISETGSAA 427 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 D+ + + + G +D + Sbjct: 428 VLT----------DIEIPLA----------------TVLVAMEREGVSIDADGIKAFGKE 461 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267 V + K+ +E+ + ++L + LF + L T+ +T VL S Sbjct: 462 VCEKAEKISREIYEYAGY-EFNIGSPKQLGSVLFEKLALPSAKKTKTGYSTNADVLESLM 520 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 P + R ++ + L++ + DGR+ T + +RTGR S Q Sbjct: 521 DKHPIVPLITEYR-ALTKLQNTYVTGLLKVVGEDGRIHSTFKQ-TETRTGRISSAEPNIQ 578 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + E +R A +G LV AD + IE R Sbjct: 579 NIPVRTPLGRE-------------------------MRRFFTAKDGYLLVDADYSQIELR 613 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA ++G++ KAF G D++ T ++ FN VT D R+ K + Sbjct: 614 VLAHISGDEIMKKAFLDGVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNF---------- 663 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G+ + + + Sbjct: 664 ----GIVYGIGAFSLSKDI------------------------------GVSVPKASEYI 689 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 +++ K+S ++ + ++ + + GR Sbjct: 690 RSYLSKYSGIAHYMEQTVAKAKR--------------------------DGYVETMFGRR 723 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 +++ R +Q + DI+ M+ Sbjct: 724 RYIKELAAKN---KNLQAFGERVA------KNTPIQGTAADIIKIAMIKVYNRLEESGLD 774 Query: 622 YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + + +L M + +P+ + K + Sbjct: 775 ARLILQVHDELIVEAKEDCAEKVALLLKEEMENAVK--LTVPMTVDVNIGKTW 825 >gi|317471923|ref|ZP_07931257.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA] gi|316900589|gb|EFV22569.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA] Length = 420 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 76/506 (15%), Positives = 143/506 (28%), Gaps = 119/506 (23%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E + RG VD + +L + + + + Sbjct: 20 YEEIEIPTMVALHDMEVRGIHVDRKALKEYGDQLIGRIEELRELIYKEAG-EEFNINSPK 78 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF L T+ +T VL + L P + R ++ + L Sbjct: 79 QLGVVLFEHMKLEGGKKTKTGYSTSVDVLEKIEHLYPIISYILEYRQ-LTKLKSTYADGL 137 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + D R+ G + TGR S QN+P Sbjct: 138 ANYIGDDERIHGKFNQ-TITATGRISSTEPNLQNIPARVELGRA---------------- 180 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R + EG V AD + IE RVLA ++ ++ + A+E +D++ T + Sbjct: 181 ---------IRKVFLPEEGYTFVDADYSQIELRVLAHLSRDKNLIHAYEMEQDIHARTAS 231 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 F V QV+ QR K + GL+ Sbjct: 232 EVFGVPIDQVSSIQRRDAKAVNF--------------GIVYGLS---------------- 261 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + + + + + + +V + L++ E+ E Sbjct: 262 --------------AFGLSQDLKITRKQAQEYIDKYFETYPKVKKY---LNREVEKGKEE 304 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 G + R ++ ++ R Sbjct: 305 GFVTTMFQ-----------------------RIRPIPELKSSNFMQRN---FGERVAMNS 338 Query: 595 GKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNAS-ML 647 +Q + DI+ M+ K ++L +HDE++ E D++ +L Sbjct: 339 P------IQGSAADIIKIAMIRVNMELKKRKLKSRLILQIHDELLIEAHDSEVEEVKGIL 392 Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRY 673 M S +PL + + + Sbjct: 393 TREMMSAAK--LSVPLSIDIHTGNSW 416 >gi|329767425|ref|ZP_08258950.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341] gi|328836114|gb|EGF85805.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341] Length = 879 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 88/688 (12%), Positives = 197/688 (28%), Gaps = 149/688 (21%) Query: 6 IDFETRSPIDLTKCGICKYAED---VCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEA 60 IDF T S + Y ED V+ + + ++ + + + E Sbjct: 317 IDF-TDSA-----LHVECYTEDYHNSDVVGI-VVYREGDAYIF---SEEQFFTNEFVVEY 366 Query: 61 LENTDVTIVAHNSYFE---RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 L++ V V ++ + ++I +++ + + + Sbjct: 367 LQSEFVKTV-----YDFKKILFIAKRNGVNIN-GEVFDVKIVSYLIDVNAKTEIDKIVFN 420 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + ++ +E+ + K E+ L + + Sbjct: 421 YLGKIIKSDEEIYGKGAKRTLPSQDVINPYIAEVAESIALMKPLMEEK----LAEENMTD 476 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E ++ + + G V ++ D L+ + +L + Sbjct: 477 LYKDIEIKVAKVLANMEFEGIHVSKKALEEMSAEFDERIKTLESSIYTLAGS-EFNIASP 535 Query: 237 EKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + GL T+ +T VL + + R ++ Sbjct: 536 KQLGVVLFEDLGLPPIKKTKTGYSTAVEVLEQLQHSHEIIPLIMEYR-TITKLNSTYAKG 594 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 LV+ + +G++ + A +TGR S QN+P ++ Sbjct: 595 LVKDITREGKIHTRYEQTLA-QTGRLSSVNPNLQNIPTRIEEGKK--------------- 638 Query: 354 PDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + SE + ++ D + IE RVLA +A ++ + AF+ D++ T Sbjct: 639 ----------IRKAFVPASEDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKT 688 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 + V+ QVT R K + + G++ ++ Sbjct: 689 ASDVNGVSLDQVTSSMRREAKAVNFGIV--------------YGISDFGLSN-------- 726 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 + + + V + ++ + ++ Sbjct: 727 ----------------------NLGITRKRAKEFIDKYLETFKGVDKYMTDIVEFAKE-- 762 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 + + R D+ + Sbjct: 763 ------------------------HGYVETLFNRRRALPDINAKNKIV---------ANL 789 Query: 593 YGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT-DEFNAS 645 + +Q + DI+ M+N TK ++L VHDE++ + +E Sbjct: 790 NARIAMNSPIQGTAADIIKIAMVNVFEYLEKTKVDAKLLLQVHDELIFDVNKDIEEDFTK 849 Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + LKAE + Sbjct: 850 EMIKIMEEAA--NLDVQLKAEASSGASW 875 >gi|315504696|ref|YP_004083583.1| DNA polymerase i [Micromonospora sp. L5] gi|315411315|gb|ADU09432.1| DNA polymerase I [Micromonospora sp. L5] Length = 909 Score = 273 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 95/629 (15%), Positives = 176/629 (27%), Gaps = 129/629 (20%) Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEAL 116 L + + V H+S A ++ T + A L + Sbjct: 390 WLADAERPKVLHDSKPAVLAFAAH-GWELQGIA-RDTQIAAYLARPDQRSYDLTDLALRY 447 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + E G E + ++N +A D ++R+ + Sbjct: 448 LHRELR-VDAPETGQLTLDGLGDEGVAEQNL--MLQARATLDLADAIDAELSRDGEQSAR 504 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 ++ E L + T+ G D L E Q + + Sbjct: 505 LMAGVELPLMRVLATMERTGIAADTDYLSELEAHFAAEVKAAAQGAYEVVG-REFNLGSP 563 Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSN-KKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L+ LF E GL +T T L + + ++ ++ Sbjct: 564 KQLQEILFTELGLPKTKRIKTGYTTDADALQWLFAQTEHPLLHHLLRHRDVAKLKST-VD 622 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L+++++ DGR+ T A+ TGR S QN+P + Sbjct: 623 GLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRTEEGRR-------------- 667 Query: 353 DPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R + EG + L+ AD + IE R++A ++ + ++AF +G D + Sbjct: 668 -----------IRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFHAA 716 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + F V VT DQR K M GL+ + Sbjct: 717 TASSVFTVEVGDVTADQRRKIKAMNYG--------------LAYGLSAFGLSQQ------ 756 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + + V + E+ Q Sbjct: 757 ------------------------LGISAEEARGLMENYFAGFGGVRDYLQEVVARARQ- 791 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR D+ ++ R Sbjct: 792 -------------------------DGYTSTILGRRRYLPDLVSDN---RQRREMAERMA 823 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ M++ A ++L VHDE+V E + Sbjct: 824 LNAP------IQGSAADIIKVAMLHVDSALRDAGLRSRMLLQVHDELVFEVAPGERETLE 877 Query: 646 MLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 L M + +PL+ E + Sbjct: 878 ALVRKQMGEA--YPLSVPLEVSVGEGHDW 904 >gi|167751303|ref|ZP_02423430.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702] gi|167655810|gb|EDR99939.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702] Length = 829 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 84/593 (14%), Positives = 166/593 (27%), Gaps = 149/593 (25%) Query: 94 ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + A +L + + + K I + C Sbjct: 369 FDTTLAAYLADPDSNDYSLSRLCAQYGVPEGNSIQEKS-ITVAALNDILNCKISETGSAA 427 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 D+ + + + G +D + Sbjct: 428 VLT----------DIEIPLA----------------TVLVAMEREGVSIDADGIKAFGKE 461 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267 V + K+ +E+ + ++L + LF + L T+ +T VL S Sbjct: 462 VCEKAEKISREIYEYAGY-EFNIGSPKQLGSVLFEKLALPSAKKTKTGYSTNADVLESLM 520 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 P + R ++ + L++ + DGR+ T + +RTGR S Q Sbjct: 521 DKHPIVPLITEYR-ALTKLQNTYVTGLLKVVGEDGRIHSTFKQ-TETRTGRISSAEPNIQ 578 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P + E +R A +G LV AD + IE R Sbjct: 579 NIPVRTPLGRE-------------------------MRRFFTAKDGCLLVDADYSQIELR 613 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA ++G++ KAF G D++ T ++ FN VT D R+ K + Sbjct: 614 VLAHISGDEIMKKAFLDGVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNF---------- 663 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G+ + + + Sbjct: 664 ----GIVYGIGAFSLSKDI------------------------------GVSVPKASEYI 689 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 +++ K+S ++ + ++ + + GR Sbjct: 690 RSYLSKYSGIAHYMEQTVAKAKR--------------------------DGYVETMFGRR 723 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 +++ R +Q + DI+ M+ Sbjct: 724 RYIKELAAKN---KNLQAFGERVA------KNTPIQGTAADIIKIAMIKVYNRLKESGLD 774 Query: 622 YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + + +L M + +P+ + K + Sbjct: 775 ARLILQVHDELIVEAKEDCAEKVALLLKEEMENAVK--LTVPMTVDVNIGKTW 825 >gi|157804146|ref|YP_001492695.1| DNA polymerase I [Rickettsia canadensis str. McKiel] gi|157785409|gb|ABV73910.1| DNA polymerase I [Rickettsia canadensis str. McKiel] Length = 875 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 90/632 (14%), Positives = 185/632 (29%), Gaps = 146/632 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++ L + + + ++ +LK N I ++ + + K + E Sbjct: 375 DIISNLLTDKSIKKITYSLK---PLLKFYANQSHAITAIEDLELIQYALSAGLSQKNLFE 431 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 +QK + +I K + + K + + F Y D Sbjct: 432 ----EAQKETVIENIINESAKIVINFISLYKQKILELKDNKAFRLYSNID---------- 477 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + ++ + G VD L+ E +L++E+ +L+ + Sbjct: 478 --------LPICFILDKMEKVGIKVDANYLKQLSAEFGTEIARLEEEIFALSGTK-FNIG 528 Query: 235 CLEKLKTWLFLETGLHLED---LT--ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L T +T +L K + + ++ Sbjct: 529 APKQLGEILFEKMQLPFGKASAKTNSYSTGVEILKKLSKHGYNIADLLLRWRQLTKLKNT 588 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 ++L + +++ R T ++ TGR S QN+P S + Sbjct: 589 YTDSLPKQIDNITRRVHTTFLQTSTTTGRISSQEPNLQNVPIRSSEGNK----------- 637 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R I +G KL+ AD + IE R+L+ +A +AF +D++ Sbjct: 638 --------------IRQAFIPEKGYKLISADYSQIELRILSHIANIDALKQAFTNKDDIH 683 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + FN+ ++T R K + G++ A Sbjct: 684 TQTACQIFNLPKDKLTSKHRRKAKAINF--------------GIIYGISAFGLAQQ---- 725 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + K + ++ V E + Sbjct: 726 --------------------------LNVTNSEAAEYIKKYFAEYKGVQEYIEQTKAFV- 758 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 +N + GR + N + + R Sbjct: 759 -------------------------SSNGYVTNFFGRKCFLPSIHNKK-----LKQFAER 788 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643 +Q + DI+ M+N K +VL +HDE++ E P + Sbjct: 789 AAINAP------IQGTNADIIKIAMINLDQEIEKLKLKTRLVLQIHDELLFEAPTDEIEL 842 Query: 644 A-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++ +M + S +P+ E + Sbjct: 843 VIPIIKKIMEN--STNMDVPIITEIRAGNNWM 872 >gi|148284572|ref|YP_001248662.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong] gi|146740011|emb|CAM80088.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong] Length = 910 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 102/669 (15%), Positives = 198/669 (29%), Gaps = 155/669 (23%) Query: 31 ILFAFGFDDHPVELWDCV---HDPVMPQV---------LKEALENTDVTIVAHNSYFERT 78 I F D H + D + + E L ++ + + +N Sbjct: 365 ISITFSLDLHKLYFIDLTAITSKEQNRAIATNPWWKSSIIELLLDSSIQKITYNLKELLI 424 Query: 79 VLKACFNLDIPIHR-WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGE 137 L +I +++ L L+ K ++ + + Sbjct: 425 FLLNFLRTEITSASCIDDIMLMHYILSAGKN------DLSLNEIIQTYNKSYSEQYSENK 478 Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197 LF K L + + Y+ + I + G Sbjct: 479 VCWLKN----TFDNLMSELFKN-------------KLLHCYYEIDLPICYILRNIENNGI 521 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED---L 254 ++V L L+ + + L+Q++ + + ++L LF L Sbjct: 522 KINVPLLKELSAQLKHKIELLEQQIYKICGQ-EFNIASPKQLGEILFDVLKLPHAKVSQK 580 Query: 255 TET--TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T++ T VL + + + + + ++ ++TL +N++ T Sbjct: 581 TKSYSTDSEVLENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRIHTTLLQT 640 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 ++ T R S QN+P S + VRS +A + Sbjct: 641 STTTSRLSSHSPNLQNIPIRSEYGLK-------------------------VRSAFVAPQ 675 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G K++ AD + IE R+L++ A + F GED++ +T A+ F + QVT++ R Sbjct: 676 GSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQVTEEHRRKA 735 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G++ Sbjct: 736 KAINF--------------GVIYGIS------------------------------AFGV 751 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 A + T + + Q++ + + +E + + Sbjct: 752 AKQLNISNTEAAQYINHYFQEYPSIRQYMDETKKFAVE---------------------- 789 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 N + GR + ++ TT R +Q+ + DI Sbjct: 790 ----NGYVKNMIGRRCYIPLINSSNL---TTRNFAQRAAINAP------IQSTASDIAKI 836 Query: 613 GMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665 M+ K Y ++L VHDE+V E P+ A L M + P + PLK Sbjct: 837 AMIQYEKLIYSKYPAIKLLLQVHDELVFELPNELVDTACNLIKCTMENIPYF--SFPLKV 894 Query: 666 EGYESKRYR 674 E + Sbjct: 895 ELKIGDNWG 903 >gi|262202783|ref|YP_003273991.1| DNA polymerase I [Gordonia bronchialis DSM 43247] gi|262086130|gb|ACY22098.1| DNA polymerase I [Gordonia bronchialis DSM 43247] Length = 949 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 104/671 (15%), Positives = 194/671 (28%), Gaps = 119/671 (17%) Query: 32 LFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 A D D + L + L + + H + L + Sbjct: 364 GLAIAAADGTSAYVDVTAVDADDEQALADWLADPAMGKALHEVKWGIHAL-RSRGWTLA- 421 Query: 91 HRWICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 T + A L + + ++G + + Sbjct: 422 GVTSDTSLAAYIVRPGQRTFNLDDLALRYLRRELRADDGSGDGQLSLL--DDDGGAAKLA 479 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 H R E + + L L+ E L ++ + G VDV L Sbjct: 480 EQHMLEARAVVELA-EVLDTELDRIDSLPLLTEMELPLAFVLADLEAAGIAVDVDHFGEL 538 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLS 264 + + + + ++L+T LF + + T+T L Sbjct: 539 EKNFAQRIRVAANAAYDVIGEQI-NLGSPKQLQTVLFDKLDMPKTKKTKTGYTTDADALQ 597 Query: 265 SNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 + + P + +R A+R V ++ L++++ DGR+ T A+ TGR S Sbjct: 598 ALYEKTEHPFLAHLLEHR-DATRLKVT-VDGLLKSVADDGRIHTTFNQTIAA-TGRLSST 654 Query: 323 VFPPQNLPRPSRSHEELDQII------------THLPTSITSDPDPLQIISDCVRSCVIA 370 QN+P + + E+ Q S S PD + S Sbjct: 655 EPNLQNIPVRTAAGREIRQGFIVGAGSGASGDGGVGAGSGASGPDGVGAGSGSSGHDGGT 714 Query: 371 SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 +G L+ AD + IE R++A ++ + ++AF TGEDL+ +R+F V +VT + R Sbjct: 715 GDGFDCLMTADYSQIEMRIMAHLSEDAGLIEAFNTGEDLHNFVGSRAFGVPIDEVTTEMR 774 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K M L Y Sbjct: 775 HRVKAMSYGLAYG-----LSAFGL------------------------------------ 793 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 A + + A+ + V + +++ + Sbjct: 794 ---AAQLKISRDEAKEQMDAYFARFGGVRDYLHDVVAEARR------------------- 831 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 N GR D+ ++ + R +Q + DI Sbjct: 832 -------NEYTATLFGRRRYLPDLNSDNWQRRQS---AERMALNAP------IQGTAADI 875 Query: 610 LAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + M+N K ++L VHDE+V E + + M + + +P Sbjct: 876 IKVAMINVHKRLQSEELRSRMLLQVHDELVVEVATGERDAVEAVVREEMGAAIT--LSVP 933 Query: 663 LKAEGYESKRY 673 L+ + + Sbjct: 934 LEVSVGFGRSW 944 >gi|262043420|ref|ZP_06016545.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039246|gb|EEW40392.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 362 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 130/356 (36%), Positives = 195/356 (54%), Gaps = 8/356 (2%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L+ D ET I + G YAE V V+LFA+ D PV +WD +P L++A+ Sbjct: 5 ILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPSRLRKAIA 63 Query: 63 NTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 + D + HNS+F+RTVL+ L P+ RW T+V A ++ LP AL A+ E L + Sbjct: 64 DPDTLLYFHNSHFDRTVLRHAMPELAPPVERWRDTMVQALAHSLPGALAALCEVLGVPQD 123 Query: 122 --KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 K +EGK LI FCK R H W+ F Y D+ RE++KRL Sbjct: 124 KAKDKEGKSLIQLFCKPRPKNSKLRRATSKTHPIEWQRFVAYAGLDIEAMREVYKRLPKW 183 Query: 179 SSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + + E LW+ DQ INDRG+CVD+ L H + VD + +L ++ +T G V ++ Sbjct: 184 NYQGTELALWHRDQQINDRGFCVDMDLVHGAIRAVDRAQKRLAEQTVEITNGEVQAATQR 243 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 + + + G+ L D+ ++T +R ++ L P ++ + R++AS ++ K TL++ Sbjct: 244 DAMIKHIVESYGVELPDMQKSTIERRIAD-PDLPPAVKELLHIRLQASATSTSKYKTLLK 302 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 +++SDGRLRGTLQF GASRTGRW+G +F PQNL R S S EE++ I + Sbjct: 303 SVSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLSRESLSREEIEFGIECMKADCED 358 >gi|255348868|ref|ZP_05380875.1| DNA polymerase I [Chlamydia trachomatis 70] gi|255503408|ref|ZP_05381798.1| DNA polymerase I [Chlamydia trachomatis 70s] gi|255507086|ref|ZP_05382725.1| DNA polymerase I [Chlamydia trachomatis D(s)2923] gi|289525537|emb|CBJ15015.1| DNA polymerase I [Chlamydia trachomatis Sweden2] gi|296435096|gb|ADH17274.1| DNA polymerase I [Chlamydia trachomatis E/150] gi|296438817|gb|ADH20970.1| DNA polymerase I [Chlamydia trachomatis E/11023] Length = 866 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 106/660 (16%), Positives = 203/660 (30%), Gaps = 138/660 (20%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 + A + V + + +LK+ + + S + L +D+ Sbjct: 327 QLHGVALA-GANQVFYIEVSGVQEI-ALLKDFFADKATQFFGYRSKRDNHAL-RNSGIDV 383 Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 + LVLA L + G + + ME G A F E Sbjct: 384 HVTA--D-LVLA------EHLVSGGAKISFQTLLMESGHIQEAVFFSKEWGAGSLPVQSL 434 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202 + FG + + + +F +LE + EQ L + + G +D Sbjct: 435 PRD-PSQYFGMFASKLLAIKNYLFVKLEEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQ 493 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262 L++ + E + QE+ L + + ++L L+ G+ D ++T V Sbjct: 494 GLAVLDRDLTKELEECSQEIYDLVGC-EFNIKSPKQLSDILYQRLGIEPVDKAKSTKAEV 552 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSG 321 L + + ++ R + + L + +N+ R+ T +G + TGR S Sbjct: 553 LEALEDRHEIIPKILMFR-ATEKMLSTYVRALPKQINAGTQRIHPTFNQVG-TVTGRLSC 610 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVAD 380 QN+P S +R + + AD Sbjct: 611 QDPNLQNIPVRSERGR-------------------------SLREAFRVKKDNDYFLAAD 645 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R LA ++ ++ +AF +GED++ T ++ FNV QVTK QR K + Sbjct: 646 YSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVN---- 701 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 G + + Sbjct: 702 ----------FGLVYG------------------------------QQAYGLSKILKISV 721 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + + A+ ++ +E + Q EQ +N K Sbjct: 722 SEAQGLMDAYFARYPLAAEF---ITQTIEQASKNQKVTTML------------------- 759 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 GR + D ++ G +Q + +++ M+N + Sbjct: 760 ----GRERILSDWESSPGAR----------AASGRLAVNTRIQGSAAELIKLAMLNISDE 805 Query: 621 ------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L +HDE++ E P + S++ M S +PL K + Sbjct: 806 MRSRGLKSRLLLQIHDELLFEVPAEELEEMRSLVQEKMESAME--LSVPLVVNVLIGKNW 863 >gi|153813587|ref|ZP_01966255.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174] gi|149830332|gb|EDM85424.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174] Length = 811 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 88/670 (13%), Positives = 178/670 (26%), Gaps = 134/670 (20%) Query: 20 GICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSYFE 76 G+ ++ V + + LKE ++ + + Sbjct: 256 GVALLSDKEGVYGLGIALTKGEIYYVPVEGLLTGDYICAALKEI-ADSTILC-----SID 309 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARF 133 + L+ T V + L + +L+ + Sbjct: 310 VKSMLKHVGLE-DADHVFDTGVAVYLLNPLKSSYTFDDIAREY-LDGALLPTRTDLLGKD 367 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYC----KGDVTVTREIFKRLEPLSSKEQELWYLD 189 E D + Y + E++ E L + Sbjct: 368 SLKAAWEKSSDGLMSYACHL--AYTAYATREPIENALKETEMWNVYR---EIELPLIFTL 422 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 ++ G V + + + V +L++ + + ++L LF + G+ Sbjct: 423 DSMEKWGIRVKGEELKSYGEKLQVRIAELEKLIYEQAG-EEFNINSPKQLGVILFEKMGI 481 Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T+ +T +L P + R ++ + L + +DGR+ Sbjct: 482 PGGRKTKTGYSTAADILEKLAPEQPIVNDILEYRQ-LTKLKSTYADGLSAVIEADGRIHS 540 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 T + TGR S QN+P +R Sbjct: 541 TFNQ-TITATGRISSTEPNLQNIPVRMELGR-------------------------LIRK 574 Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 + +G + AD + IE RVLA M+G++ ++A+ ED++ T ++ F+V +VT Sbjct: 575 VFVPEDGYVFLDADYSQIELRVLAHMSGDEKLIQAYREAEDIHRLTASQVFHVPFDEVTD 634 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 QR K + + Y + L++ E + + F + Sbjct: 635 LQRRNAKAVNFGIVYGIS-----SFGLSQDLSITRKEAAEYIEKYFETYPKIKGFLDGLV 689 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + E +RR + Sbjct: 690 ADGKEKGYVSTM-----------------------------------------LGRRRPI 708 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 P + R +N+ + + Q Sbjct: 709 PELKSGNFMQRSF---------------GERVAMNSPIQ--GTAADIIKIAMNRVYQ--- 748 Query: 607 RDILAEGMMNATKAG--YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663 + G +VL VHDE++ ET + S + M + L Sbjct: 749 ---------RLKEEGLQSRLVLQVHDELLIETKKEEVETVSRILEEEMKGAVH--LSVEL 797 Query: 664 KAEGYESKRY 673 + +E + Sbjct: 798 DVDMHEGNSW 807 >gi|15605221|ref|NP_220007.1| DNA polymerase I [Chlamydia trachomatis D/UW-3/CX] gi|76789230|ref|YP_328316.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13] gi|237802921|ref|YP_002888115.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT] gi|237804843|ref|YP_002888997.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT] gi|255311309|ref|ZP_05353879.1| DNA polymerase I [Chlamydia trachomatis 6276] gi|255317610|ref|ZP_05358856.1| DNA polymerase I [Chlamydia trachomatis 6276s] gi|3328929|gb|AAC68093.1| DNA Polymerase I [Chlamydia trachomatis D/UW-3/CX] gi|76167760|gb|AAX50768.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13] gi|231273143|emb|CAX10056.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT] gi|231274155|emb|CAX10949.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT] gi|296436024|gb|ADH18198.1| DNA polymerase I [Chlamydia trachomatis G/9768] gi|296436952|gb|ADH19122.1| DNA polymerase I [Chlamydia trachomatis G/11222] gi|296437885|gb|ADH20046.1| DNA polymerase I [Chlamydia trachomatis G/11074] gi|297140385|gb|ADH97143.1| DNA polymerase I [Chlamydia trachomatis G/9301] Length = 866 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 106/660 (16%), Positives = 202/660 (30%), Gaps = 138/660 (20%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 + A + V + + +LK+ + + S + L +D+ Sbjct: 327 QLHGVALA-GANQVFYIEVSGVQEI-ALLKDFFADKATQFFGYRSKRDNHAL-RNSGIDV 383 Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 + LVLA L + G + + ME G A F E Sbjct: 384 HVTA--D-LVLA------EHLVSGGAKISFQTLLMESGHIQEAVFFSKEWGAGSLPVQSL 434 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202 + FG + + +F +LE + EQ L + + G +D Sbjct: 435 PRD-PLQYFGMLASKLLAIKNYLFVKLEEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQ 493 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262 L++ + E + QE+ L + + ++L L+ G+ D ++T V Sbjct: 494 GLAVLDRDLTKELEECSQEIYDLVGC-EFNIKSPKQLSDILYQRLGIEPVDKAKSTKAEV 552 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSG 321 L + + ++ R + + L + +N+ R+ T +G + TGR S Sbjct: 553 LEALEDRHEIIPKILMFR-ATEKMLSTYVRALPKQINAGTQRIHPTFNQVG-TVTGRLSC 610 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVAD 380 QN+P S +R + + AD Sbjct: 611 QDPNLQNIPVRSERGR-------------------------SLREAFRVKKDNDYFLAAD 645 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R LA ++ ++ +AF +GED++ T ++ FNV QVTK QR K + Sbjct: 646 YSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVN---- 701 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 G + + Sbjct: 702 ----------FGLVYG------------------------------QQAYGLSKILKISV 721 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + + A+ ++ +E + Q EQ +N K Sbjct: 722 SEAQGLMDAYFARYPLAAEF---ITQTIEQASKNQKVTTML------------------- 759 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 GR + D ++ G +Q + +++ M+N + Sbjct: 760 ----GRERILSDWESSPGAR----------AASGRLAVNTRIQGSAAELIKLAMLNISDE 805 Query: 621 ------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L +HDE++ E P + S++ M S +PL K + Sbjct: 806 MRSRGLKSRLLLQIHDELLFEVPAEELEEMRSLVQEKMESAME--LSVPLVVNVLIGKNW 863 >gi|71032543|ref|XP_765913.1| hypothetical protein [Theileria parva strain Muguga] gi|68352870|gb|EAN33630.1| hypothetical protein TP01_0386 [Theileria parva] Length = 1786 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 103/712 (14%), Positives = 188/712 (26%), Gaps = 189/712 (26%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-------VHDPVMP 54 + +D ET T + L + P + D + Sbjct: 1220 KAVGVDIETTGLDHNTN----------QIRLVQLSVPNQPSLIIDLFKLSTNNPDAESVV 1269 Query: 55 ---------QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 + LK+ ++ + V HN F+ L + + T+V ++ Sbjct: 1270 PGRNELIKCEWLKKLFKSKETVKVFHNGKFDINFL-RVYGFEFE-GPIFDTMVASKLLVA 1327 Query: 106 PS----ALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 L V E L + K ++ + + + Y Sbjct: 1328 SRYISCKLTHVSERYLNIVLDKTQQYSDWSTL-------------------QLFEEQLLY 1368 Query: 161 CKGDVTVTREIFKRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIV 211 D V ++ LE L + + G VD L + Sbjct: 1369 SARDSFVLLPLYVILEHLLKINNLSDIASVENKCILATSDMELNGIQVDEDKLKFLQDEL 1428 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK 268 E ++ L S + +++ L E + + + T + L + Sbjct: 1429 KQEHQEISNTLYSQLNQSEINLNSQKQVLEKL-QELKIMDKSKKKIISDTSESTL--IRN 1485 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQ 327 ++ I +A+++ L +N R+ LGA GR+S Q Sbjct: 1486 MSNPIISSLREYRKANKALTAFTQKLPNHINPITKRIYPNYNQLGAES-GRFSCDGPNLQ 1544 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 +PR R C +A +G K V+AD + IE R Sbjct: 1545 QVPRD-----------------------------KKFRECFVAPKGSKFVIADFSQIELR 1575 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 + A +A + ++A++ DL+ T + N V K++R + K + L + Sbjct: 1576 IAAEIANDPKMIQAYQQKVDLHSLTASILKNKNINDVNKEERQLAKAVNFGLIFGMSING 1635 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + A E + + Sbjct: 1636 LRMYA--------------------------------------ETGYNLKLTQNEAKEIY 1657 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 ++ + N + + R Sbjct: 1658 TSFFNNFKGILNWHNSVKN------SRPTMVRTLGNRLSVFESFSFT------------- 1698 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYD 623 + VQ S DI E M Sbjct: 1699 ----------------------------RSLNYPVQGTSADITKETMARLVDLVKPLNAK 1730 Query: 624 IVLTVHDEIVCETPDT-DEFNASMLYHLM-TSNPSWAKGLPLKAEGYESKRY 673 I++ VHDEI+ E P+ E ML M S + K +P++A G + Sbjct: 1731 IIICVHDEIILEVPEDNAEKALKMLIDTMVKSGEKYLKKVPVEAMGSIGDSW 1782 >gi|258616062|ref|ZP_05713832.1| DNA polymerase I [Enterococcus faecium DO] Length = 838 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 78/624 (12%), Positives = 175/624 (28%), Gaps = 139/624 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86 ++ A+G + +D + + + + +++ L Sbjct: 335 EIVGVAWGTEKK----IYVTNDLSVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTG- 389 Query: 87 DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 L+ A ++ + + + +E + L Sbjct: 390 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------AVYGKGAKKGL 441 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200 + + R +++E+ ++ + ++ EL + + G VD Sbjct: 442 PEEEELFFAHLARKVAAINALTPKLSQELAEKNQEDLFRKMELPLSIILAEMEISGIKVD 501 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + +++Q++ + ++L LF + GL + T+ + Sbjct: 502 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 560 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL ++ P + R ++ + L++ + SDG++ ++TG Sbjct: 561 TAVDVLEQLREQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQSDGKVHTRYVQ-TLTQTG 618 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376 R S QN+P + +R + E + Sbjct: 619 RLSSVDPNLQNIPIRLDEGRK-------------------------IRQAFVPREKDWLI 653 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVM 435 +D + IE RVLA ++ ++ AF G+D++ +T R F + VT + R K + Sbjct: 654 YSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAV 713 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ + Sbjct: 714 N--------------FGIVYGISDYGLSQ------------------------------N 729 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 A ++ + +K+ V E + + + Sbjct: 730 LGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKD------------------------- 764 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + R D+ + R +Q + DIL M+ Sbjct: 765 -QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINTP------IQGSAADILKIAMI 814 Query: 616 NATKA------GYDIVLTVHDEIV 633 K ++L VHDE+V Sbjct: 815 ELDKRLKETGLQATMLLQVHDELV 838 >gi|297748623|gb|ADI51169.1| DNA polymerase I [Chlamydia trachomatis D-EC] gi|297749503|gb|ADI52181.1| DNA polymerase I [Chlamydia trachomatis D-LC] Length = 868 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 106/660 (16%), Positives = 202/660 (30%), Gaps = 138/660 (20%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 + A + V + + +LK+ + + S + L +D+ Sbjct: 329 QLHGVALA-GANQVFYIEVSGVQEI-ALLKDFFADKATQFFGYRSKRDNHAL-RNSGIDV 385 Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 + LVLA L + G + + ME G A F E Sbjct: 386 HVTA--D-LVLA------EHLVSGGAKISFQTLLMESGHIQEAVFFSKEWGAGSLPVQSL 436 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202 + FG + + +F +LE + EQ L + + G +D Sbjct: 437 PRD-PLQYFGMLASKLLAIKNYLFVKLEEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQ 495 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262 L++ + E + QE+ L + + ++L L+ G+ D ++T V Sbjct: 496 GLAVLDRDLTKELEECSQEIYDLVGC-EFNIKSPKQLSDILYQRLGIEPVDKAKSTKAEV 554 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSG 321 L + + ++ R + + L + +N+ R+ T +G + TGR S Sbjct: 555 LEALEDRHEIIPKILMFR-ATEKMLSTYVRALPKQINAGTQRIHPTFNQVG-TVTGRLSC 612 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVAD 380 QN+P S +R + + AD Sbjct: 613 QDPNLQNIPVRSERGR-------------------------SLREAFRVKKDNDYFLAAD 647 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R LA ++ ++ +AF +GED++ T ++ FNV QVTK QR K + Sbjct: 648 YSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVN---- 703 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 G + + Sbjct: 704 ----------FGLVYG------------------------------QQAYGLSKILKISV 723 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + + A+ ++ +E + Q EQ +N K Sbjct: 724 SEAQGLMDAYFARYPLAAEF---ITQTIEQASKNQKVTTML------------------- 761 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 GR + D ++ G +Q + +++ M+N + Sbjct: 762 ----GRERILSDWESSPGAR----------AASGRLAVNTRIQGSAAELIKLAMLNISDE 807 Query: 621 ------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L +HDE++ E P + S++ M S +PL K + Sbjct: 808 MRSRGLKSRLLLQIHDELLFEVPAEELEEMRSLVQEKMESAME--LSVPLVVNVLIGKNW 865 >gi|15899978|ref|NP_344582.1| DNA polymerase I [Streptococcus pneumoniae TIGR4] gi|111656974|ref|ZP_01407784.1| hypothetical protein SpneT_02001792 [Streptococcus pneumoniae TIGR4] gi|27734651|sp|P59199|DPO1_STRPN RecName: Full=DNA polymerase I; Short=POL I gi|14971495|gb|AAK74222.1| DNA polymerase I [Streptococcus pneumoniae TIGR4] Length = 877 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 97/678 (14%), Positives = 187/678 (27%), Gaps = 156/678 (23%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMPQVL--------KEALENTDVTIVAHNSYFERT 78 + + D+ +W C L K+ LE T + + ++ Sbjct: 321 HFELFGENYHTDNLVGFVWSCGDKLYATDKLELLQDPIFKDFLEKTSLRV------YDFK 374 Query: 79 ---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135 VL F +D+ + + Sbjct: 375 KVKVLLQRFGVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDD 424 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLD 189 + + P + V + ++L EQ L ++ Sbjct: 425 ETFYGKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVL 484 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G V + ++ KL QE+ L + ++L LF + GL Sbjct: 485 AKMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGL 543 Query: 250 HL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 L T+ +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 544 PLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKI 602 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 ++TGR S QN+P + Sbjct: 603 HTRYVQD-LTQTGRLSSVDPNLQNIPARLEQGR-------------------------LI 636 Query: 365 RSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422 R + E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P Sbjct: 637 RKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPD 696 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 VT + R K + + G++ ++ Sbjct: 697 DVTANDRRNAKAVNFGVV--------------YGISDFGLSN------------------ 724 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + + ++ + +E+ + Sbjct: 725 ------------NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD------------ 760 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 + R D+ + R + Sbjct: 761 --------------KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------I 797 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655 Q + DIL M+ KA ++L VHDEIV E P ++ L M Sbjct: 798 QGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAI 857 Query: 656 SWAKGLPLKAEGYESKRY 673 +PL A+ E + Sbjct: 858 Q--LSVPLIADENEGATW 873 >gi|297161389|gb|ADI11101.1| DNA polymerase I [Streptomyces bingchenggensis BCW-1] Length = 912 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 98/664 (14%), Positives = 179/664 (26%), Gaps = 147/664 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSY-----FERTVLKACFNL 86 A P +D + + + + + V H++ F+ Sbjct: 368 IALAAASGPAVCFDPSAVDEPDERAFADWIADPERPKVMHDAKRVMRVFDEQ------GW 421 Query: 87 DIPIHRWICTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECL 142 + T + A AL A+ E L + F E E Sbjct: 422 AVAGAAM-DTALAAYLVKPGRRSFALDALSVEYLGRELSPAAAAESGQLAFGADEQAEQD 480 Query: 143 YDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 + FG V L E + L + G D Sbjct: 481 ALMIQARTILDLGEAFGRRLAEVGAVEL--------LRDVELPISALLARMEKAGIAADR 532 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---T 258 ++Q + +E + ++L+ F E GL +T T Sbjct: 533 DWLDRMDQRFAGAVQQAVKEAHDAVGH-EFNLGSPKQLQEVFFGELGLPKTKKIKTGYTT 591 Query: 259 CQRVLSSNK-KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 L+ + + + +R + L++A+ GR+ T A+ TG Sbjct: 592 DADALAWLATQTDHELPVIMLRHREQARLRST-VEGLIKAIAPGGRIHTTFNQTVAA-TG 649 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-L 376 R S QN+ + +R + EG + L Sbjct: 650 RLSSTDPNLQNVHVRTEEGRA-------------------------IRRGFVVGEGFESL 684 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE RV+A ++ ++ ++AF +GEDL+ T ++ F VA ++V + R K M Sbjct: 685 LTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVASQVFGVAKSEVDPEMRRKIKAMS 744 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 GL+ + Sbjct: 745 Y--------------GLAYGLSAFGLSQQ------------------------------L 760 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 ++ + ++ V + L + ++ G Sbjct: 761 GITPDEARKLMDTFFERFGGVRDY---LQRVVDEARATGYTETML--------------- 802 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 GR D+ ++ R +Q + DI+ M+ Sbjct: 803 --------GRRRYLPDLNSDN---RQRREMAERMALNAP------IQGTAADIVKIAMLR 845 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 +A ++L VHDEIV E + L M + PL Sbjct: 846 VDEALTKEKLSSRMLLQVHDEIVVEVAPGEREQVEALVRREMAGA--FHLRAPLDVSVGA 903 Query: 670 SKRY 673 + Sbjct: 904 GTDW 907 >gi|145595660|ref|YP_001159957.1| DNA polymerase I [Salinispora tropica CNB-440] gi|145304997|gb|ABP55579.1| DNA polymerase I [Salinispora tropica CNB-440] Length = 899 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 97/636 (15%), Positives = 175/636 (27%), Gaps = 133/636 (20%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGL---PSALK 110 L L + V H+S VL I T + A L Sbjct: 375 DALAGWLADVSRPKVLHDSK--PAVLAFAARGCAIQGIA-RDTQIAAYLARPDQRSYDLT 431 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + + + E G ++ ++N D ++R+ Sbjct: 432 DLALRYLHRELR-VDLPETGQLTLDGLGNDGEAEQNLMLRA--RATLDLADAIDAELSRD 488 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + ++ E L + + G D L E Q Sbjct: 489 GEQSARLMAEVELPLMRVLAGMERTGIAADTQYLSELEAHFAAEVKAAAQGAYEAVG-RE 547 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN--KKLTPQAIQVFNNRMRASR 285 + ++L+ LF E GL +T T L + P + +R ++ Sbjct: 548 FNLGSPKQLQEILFGELGLPKTKRIKTGYTTDADALQWLYGQNPHPVLGHLLRHR-DVAK 606 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 ++ L+++++ DGR+ T A+ TGR S QN+P + Sbjct: 607 LKTT-VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRTEEGRR------- 657 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFET 404 +R + G + L+ AD + IE R++A ++ ++ + AF + Sbjct: 658 ------------------IRRAFVVGTGYECLLTADYSQIEMRIMAHLSADEALIDAFNS 699 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 G D + T + F V VT DQR K M L GL+ + Sbjct: 700 GLDFHAATASSVFQVPVEAVTADQRRKIKAMNYGL--------------AYGLSAFGLSQ 745 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + + + V + E+ Sbjct: 746 Q------------------------------LGVTAEEARGLMETYFAGFGGVRDYLQEV 775 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 + + GR D+ ++ Sbjct: 776 VARARR--------------------------DGYTESVLGRRRYLPDLVSDN---RQRR 806 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPD 638 R +Q + DI+ MMN A ++L VHDE+V E Sbjct: 807 EMAERMALNAP------IQGSAADIIKVAMMNVDAAVREAGLRSRMLLQVHDELVFEVAP 860 Query: 639 TDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + L M +PL+ + + + Sbjct: 861 GEREALEALVRREMGGAFP--LSVPLEVSVGDGRDW 894 >gi|157964926|ref|YP_001499750.1| DNA polymerase I [Rickettsia massiliae MTU5] gi|157844702|gb|ABV85203.1| DNA polymerase I [Rickettsia massiliae MTU5] Length = 875 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 85/632 (13%), Positives = 181/632 (28%), Gaps = 146/632 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++ L + + + ++ +LK N I ++ + + + Sbjct: 375 DIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLS----QK 427 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L K + +I K + + + + F Y D Sbjct: 428 ILFKEVLKETLIENIIIESAKIVINFISLYKQTILELKDNKTFRLYSDID---------- 477 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + ++ + G V+ L+ E KL++E+ +L+ + Sbjct: 478 --------LPICFILDKMEKVGITVNANYLKQLSAEFGTEILKLEEEIFALSGTK-FNIG 528 Query: 235 CLEKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + +T +L + + + ++ Sbjct: 529 SPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNT 588 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 ++L + +++ T ++ TGR S QN+P S Sbjct: 589 YTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNIPTRSSEGN------------ 636 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R IA EG KL+ AD + IE R+L+ +A +AF +D++ Sbjct: 637 -------------QIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIH 683 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + FN+ ++T + R K + G++ Sbjct: 684 TQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS----------- 718 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A + K + ++ V E + Sbjct: 719 -------------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFA- 758 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 +N + GR + + + + R Sbjct: 759 -------------------------SSNGYVTNFFGRKCFVPLIHDKK-----LKQFAER 788 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643 +Q + DI+ M+N K +VL +HDE++ E P + Sbjct: 789 AAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEI 842 Query: 644 A-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++ +M + S +P+ E + Sbjct: 843 ITPIIKKIMEN--STNMDVPIITEIRAGNNWM 872 >gi|256371863|ref|YP_003109687.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331] gi|256008447|gb|ACU54014.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331] Length = 886 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 95/600 (15%), Positives = 166/600 (27%), Gaps = 135/600 (22%) Query: 86 LDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 + + + VL L + G+ L R L Sbjct: 405 VPLEPRALVDLEVLGWLVDSADVAHGLDQLARRW--------LGRHLDDRGPLEAEAAPL 456 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 R R E + + + E L + + G +D Sbjct: 457 GARQWVEVVHPIREALERRLTEDDL-WRLAT------DVEIPLTRVLTDMEIHGVAIDRD 509 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + ER + E+ G + +L LF GL T+ +T Sbjct: 510 VLAAIGTELATERDRALAEVRH-YAGGELNPNSPRQLAVVLFERLGLPAGRKTKTGYSTD 568 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 RVL S + P + R + L + +DGR+ T A RTGR Sbjct: 569 ARVLESLRDAHPIVAAILRFR-ELDKLLSTFYEGLRSEIGADGRIHATFNQAVA-RTGRI 626 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+P + + R +A+EG LV A Sbjct: 627 SSERPNLQNIPVRTDEGKRF-------------------------RDAFVATEGHVLVAA 661 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA ++G++ ++ D++ AR F V +VT QR++ K++ L Sbjct: 662 DYSQIELRVLAHLSGDEELVRILSGDGDVHTLVAARVFGVPAERVTPQQRSVAKMVTYGL 721 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 A Sbjct: 722 --------------------------------------------SYGMEAYGLAQRLGVP 737 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 E + + + + A Sbjct: 738 PAEAEGILADFFAAFPGLRHYRDASVDAAR--------------------------AQGF 771 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 GR D+ + T + R+ G Q ++ DI ++ Sbjct: 772 TTTLLGRRRYLPDLDSPN---RTVRQGAERQAMNAGT------QGLAADIFKIALVRLHA 822 Query: 620 AGYD----IVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 A +VL VHDE+V E + +++ ++ +A +PL+ + + + Sbjct: 823 ALSPTDGALVLQVHDEVVVEAVAERAHDVRALVEDVLEHA--FALRVPLRVQSGVGRSWG 880 >gi|302868834|ref|YP_003837471.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029] gi|302571693|gb|ADL47895.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029] Length = 899 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 95/629 (15%), Positives = 176/629 (27%), Gaps = 129/629 (20%) Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEAL 116 L + + V H+S A ++ T + A L + Sbjct: 380 WLADAERPKVLHDSKPAVLAFAAH-GWELHGIA-RDTQIAAYLARPDQRSYDLTDLALRY 437 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + E G E + ++N +A D ++R+ + Sbjct: 438 LHRELR-VDAPETGQLTLDGLGDEGVAEQNL--MLQARATLDLADAIDAELSRDGEQSAR 494 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 ++ E L + T+ G D L E Q + + Sbjct: 495 LMAGVELPLMRVLATMERTGIAADTDYLSELEAHFAAEVKAAAQGAYEVVG-REFNLGSP 553 Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSN-KKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L+ LF E GL +T T L + + ++ ++ Sbjct: 554 KQLQEILFTELGLPKTKRIKTGYTTDADALQWLFAQTEHPLLHHLLRHRDVAKLKST-VD 612 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L+++++ DGR+ T A+ TGR S QN+P + Sbjct: 613 GLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRTEEGRR-------------- 657 Query: 353 DPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R + EG + L+ AD + IE R++A ++ + ++AF +G D + Sbjct: 658 -----------IRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFHAA 706 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + F V VT DQR K M GL+ + Sbjct: 707 TASSVFTVEVGDVTADQRRKIKAMNYG--------------LAYGLSAFGLSQQ------ 746 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + + V + E+ Q Sbjct: 747 ------------------------LGISAEEARGLMENYFAGFGGVRDYLQEVVARARQ- 781 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + GR D+ ++ R Sbjct: 782 -------------------------DGYTSTILGRRRYLPDLVSDN---RQRREMAERMA 813 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ M++ A ++L VHDE+V E + Sbjct: 814 LNAP------IQGSAADIIKVAMLHVDSALRDAGLRSRMLLQVHDELVFEVAPGERETLE 867 Query: 646 MLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 L M + +PL+ E + Sbjct: 868 ALVRKQMGEA--YPLSVPLEVSVGEGHDW 894 >gi|229828896|ref|ZP_04454965.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM 14600] gi|229792059|gb|EEP28173.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM 14600] Length = 910 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 85/603 (14%), Positives = 168/603 (27%), Gaps = 137/603 (22%) Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 R V A + + ++ I + + Sbjct: 421 GRSFDLQVAAYLLDP------LSSSYPTEDIARDQLALSIPSYSEFFGK--KKADQIWED 472 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVD 200 E Y V ++L ++ L Y + G V+ Sbjct: 473 PEEVEHRMHYACYQAYVASRAPQKLLKRLEEQGMRALYEEVELPLVYTLYDMETAGIAVE 532 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + + +L++ + + ++L LF + GL T+ + Sbjct: 533 KEALKSYGDQLVGRINELEEGIYREAG-ETFNINSPKQLGEVLFGQLGLPGARKTKTGYS 591 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL V R ++ + L + + DGR+ + Q + TG Sbjct: 592 TAADVLDPLAVNYQIVRDVLEFRQ-LTKLKSTYADGLAKVIADDGRIHSSFQQ-TVTATG 649 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P +E +R A EG V Sbjct: 650 RLSSTEPNLQNIPIRMELGKE-------------------------IRRVFPAMEGCVFV 684 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 +D + IE RVLA ++ + ++A+ G+D++ T + F+ +VT QR+ K + Sbjct: 685 DSDYSQIELRVLAHLSQDPKLIEAYRQGKDIHRATASLVFHTPFEEVTDQQRSNAKAVNF 744 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + G++ A + Sbjct: 745 GIV--------------YGIS------------------------------AFGLAKDLG 760 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + + R+ + + L + + G A+ Sbjct: 761 ISREEAQEYIDGYFAAYPRLHDYLDGLVEFAR---KEGYAVTL----------------- 800 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 GR ++ N+ R VQ + DI+ M+ Sbjct: 801 ------FGRRRPVPELKNSNFMQRQF---GERVAMNAP------VQGTAADIIKIAMVRV 845 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYES 670 ++LTVHDE++ ET + +E + M + L+ + + Sbjct: 846 HDRLAKEGLRSRLILTVHDELLVETFEQEEQEVREILDQEMRGAAQ--LSVELEIDTHSG 903 Query: 671 KRY 673 + + Sbjct: 904 RNW 906 >gi|15835394|ref|NP_297153.1| DNA polymerase I [Chlamydia muridarum Nigg] gi|270285571|ref|ZP_06194965.1| DNA polymerase I [Chlamydia muridarum Nigg] gi|270289582|ref|ZP_06195884.1| DNA polymerase I [Chlamydia muridarum Weiss] gi|301336968|ref|ZP_07225170.1| DNA polymerase I [Chlamydia muridarum MopnTet14] gi|7190807|gb|AAF39583.1| DNA polymerase I [Chlamydia muridarum Nigg] Length = 866 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 103/663 (15%), Positives = 195/663 (29%), Gaps = 144/663 (21%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 + A V + D + +LK + + + + LK +D+ Sbjct: 327 RLHGVALS-GGDEVFYIEISGDQEI-ALLKAFFADATTKFFGYRTKRDNHALKNH-GIDV 383 Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA-RFCKGETHECLYDRNK 147 + LVLA L G + + +E G A F K L +N Sbjct: 384 HVTA--D-LVLA------QHLVNGGAKISFQTLLVESGHIQEAAFFAKEWGASSLPVQNL 434 Query: 148 PNHREA--------WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 P + Y E + EQ L + + G + Sbjct: 435 PQNPAQYFGIFVSRLPSIKNYLFEK----LEEKGLKSIFKNVEQPLEEILFAMECAGMPL 490 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259 D L++ + E QE+ L + + ++L L+ G+ D ++T Sbjct: 491 DSEGLLVLDRDLSKELETYTQEIYDLAGC-EFNIKSPKQLSDVLYHRLGIKPVDKAKSTK 549 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGR 318 VL + + ++ R + + L ++ R+ T +G + TGR Sbjct: 550 AEVLEALEGSHEIISKILAFR-ATEKMLSTYVRALPRQIDLGTHRVHPTFNQVG-TVTGR 607 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI-ASEGKKLV 377 S QN+P + +R E + Sbjct: 608 LSCQDPNLQNIPVRYERGK-------------------------SLREAFRFTKENDYFL 642 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + +E R LA ++ ++ +AF++GED++ T ++ FNV QVT+ QR K + Sbjct: 643 AADYSQVELRFLAHLSQDETLKRAFDSGEDIHTFTASQVFNVPLDQVTERQRYQAKAVN- 701 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 G + + Sbjct: 702 -------------FGLAYG------------------------------QQAYGLSKNLK 718 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + A+ ++ + SE + EQ + K Sbjct: 719 ISVNEAQGLIDAYFARYPQASEF---ITHTIEQASKEQKVTTML---------------- 759 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 GR + D ++ G +Q + +++ M+N Sbjct: 760 -------GRERILSDWESSPGAR----------AASGRLAVNTRIQGSAAELIKLAMLNI 802 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYES 670 ++ ++L +HDE++ E P + +L M S S +PL Sbjct: 803 SRELVSRGLKSRLLLQIHDELLFEVPKEELEEMKVLVQEKMESAMS--LSVPLVVNVLIG 860 Query: 671 KRY 673 K + Sbjct: 861 KNW 863 >gi|332201961|gb|EGJ16030.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41317] Length = 877 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 96/669 (14%), Positives = 186/669 (27%), Gaps = 154/669 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIALIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + G++ ++ Sbjct: 706 AKAVNFGVV--------------YGISDFGLSN--------------------------- 724 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ + +E+ + Sbjct: 725 ---NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + R D+ + R +Q + DIL Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 M+ KA ++L VHDEIV E P ++ L M +PL Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 865 ADENEGATW 873 >gi|241889843|ref|ZP_04777141.1| DNA polymerase I [Gemella haemolysans ATCC 10379] gi|241863465|gb|EER67849.1| DNA polymerase I [Gemella haemolysans ATCC 10379] Length = 879 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 87/697 (12%), Positives = 191/697 (27%), Gaps = 167/697 (23%) Query: 6 IDFETRSPIDLTKCGICKYAED---VCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEA 60 IDF T S + Y ED V+ + + ++ + + + + Sbjct: 317 IDF-TDS-----TLHVECYTEDYHNSDVVGI-VVYKEGTAYIF---SEEQFFTNEFVVDY 366 Query: 61 LENTDVTIVAHNSYFE---RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 L++ ++ ++ + +DI +++ + + K Sbjct: 367 LQSE-ISKTV----YDFKKILFIAKRNGVDIN-GEVFDVKIVSYLLDVNA---------K 411 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K+ L E + +E Y I +E Sbjct: 412 TEIDKIVFNY-LGKIMSSDEEIYGKGAKRTLPAQEVIN---PYIAEIAESIALIKPLMEE 467 Query: 178 LS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E ++ + + G V ++ D L+ + +L Sbjct: 468 KLAEENMTDLYKDIEIKVAKVLANMEYEGIHVSKKALEEMSAEFDERIKTLEASIYTLAG 527 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L LF + GL T+ +T VL + + R + Sbjct: 528 S-EFNIASPKQLGVVLFEDLGLPPIKKTKTGYSTAVEVLEQLQHSHEIIPLIMEYR-TIT 585 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + LV+ + +G++ + A +TGR S QN+P ++ Sbjct: 586 KLNSTYAKGLVKDITREGKIHTRYEQTLA-QTGRLSSVNPNLQNIPTRIEEGKK------ 638 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +R + S+ + ++ D + IE RVLA +A ++ + AF+ Sbjct: 639 -------------------IRKAFVPASDDRVILSIDYSQIELRVLAHIAQDKGMIDAFK 679 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D++ T + V+ +VT R K + G++ + Sbjct: 680 HDVDIHTKTASDVNGVSLDEVTSSMRREAKAVNF--------------GIVYGISDFGLS 725 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + + + V + + Sbjct: 726 N------------------------------NLGITRKRAKEFIDKYLETFKGVDKYMTD 755 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + + + + R D+ + Sbjct: 756 IVDFARE--------------------------HGYVETLFNRRRALPDINAKNKIV--- 786 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETP 637 + +Q + DI+ M+N T ++L VHDE++ + Sbjct: 787 ------ANLNARIAMNSPIQGTAADIIKIAMVNVFEYLEKTNVDAKLLLQVHDELIFDVN 840 Query: 638 DT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +E + +M + LKAE + Sbjct: 841 KDIEEEFTKEMIKIMEEAA--NLDVQLKAEASSGASW 875 >gi|325294546|ref|YP_004281060.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064994|gb|ADY73001.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699] Length = 838 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 102/669 (15%), Positives = 195/669 (29%), Gaps = 155/669 (23%) Query: 13 PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72 P DL D + ++ VE D + + Sbjct: 316 PADLFSTPEVAVIHDFERV---IAINEGYVE-VDFKEIEEFL---------PEKGKI--- 359 Query: 73 SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132 F+ L + +I V QK K+++ + Sbjct: 360 YTFDLKSLYHKVGEKLRNFSFIDLSVCEYLLNP--------------LQKDYSSKDILKK 405 Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192 + E + D + E K + E S E L ++ + Sbjct: 406 RLGVVSLEEVKDYVHYTLDIGKEILNELKKEGLENLYE---------SIEHPLTFVLYKM 456 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 RG D + +D + ++++++ + + ++L LF + L Sbjct: 457 EKRGVLFDKEYLENFGKELDRKSKEIEKKIFEIAG-EKFNLNSPKQLSKILFEKLKLKPL 515 Query: 253 DL---TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 +T L++ + ++ + ++ + +++ M+ DGR+R T Sbjct: 516 KKTKSGYSTDVETLTALALKGHKIAELLLEYRKLTKLNSTFVKGILKHMDEDGRVRTTFI 575 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 G + TGR S QNLP IS +R V Sbjct: 576 QTG-TATGRLSSAEPNLQNLP-------------------------VSDEISKKIRYAVT 609 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 A G LV AD + IE R+LA ++ ++ L+A+ G D++ T + F ++ +V + R Sbjct: 610 APAGYNLVWADYSQIELRILAHLSQDEKLLEAYRKGRDIHTETASYLFGISAEEVDERLR 669 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 I K + G++ + + Sbjct: 670 RIAKTVNF--------------GIIYGMSPHGLSER------------------------ 691 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 E+ + +K +V E + + E G Sbjct: 692 ------LGISVEEAEKYIDRYFEKFPKVKEY---IENTLREAYEKGYVKTI--------- 733 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 GR ++ ++ R +Q + DI Sbjct: 734 --------------FGRKRPLPELKSSN---KNIRSFGERAA------VNATIQGTAADI 770 Query: 610 LAEGMMNATKA----GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLK 664 + M+ K G +VL VHDEIV E + E ++ M + + +PL Sbjct: 771 MKLAMVKLYKKLEKLGAYMVLQVHDEIVIEALEEKTEEIMKIVKETMENVVEF--SVPLT 828 Query: 665 AEGYESKRY 673 + K + Sbjct: 829 VDVKVGKHW 837 >gi|294812030|ref|ZP_06770673.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] gi|294324629|gb|EFG06272.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 913 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 92/646 (14%), Positives = 173/646 (26%), Gaps = 135/646 (20%) Query: 44 LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +D + + + V HN+ V + T + A Sbjct: 382 WFDTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEH-GWRVDGITM-DTALAAYL 439 Query: 103 NGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 AL A+ +A + F Sbjct: 440 VKPGRRSFALDALSVEYLHRELVPAAADGQLAFGTDEHAEADALMAQARAVLDLGDAFTA 499 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + V T + E L + G D A ++ + + Sbjct: 500 RLEE-VGATELLH-------DMELPTSELLARMERHGIAADRAHLESMEHLFAGAVQQAV 551 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKL-TPQAIQ 275 +E + + ++L+ F E L T+T L+ + Sbjct: 552 KEAHATVGH-EFNLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHELPV 610 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +R + L++ + +DGR+ T A+ TGR S QN+P + Sbjct: 611 IMLRHREQARLRST-VEGLIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVPVRTDE 668 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAG 394 +R + EG + L+ AD + IE RV+A ++ Sbjct: 669 GRA-------------------------IRRGFVVGEGFESLMTADYSQIELRVMAHLSQ 703 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ ++AF +GEDL+ T ++ F VA ++V + R K M L Sbjct: 704 DEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSYGL--------------A 749 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 GL+ + + + + + ++ Sbjct: 750 YGLSAFGLSQQLNIEAG------------------------------EARALMDTYFERF 779 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + + T GR D+ Sbjct: 780 GGVRDYLRHVVDEARAT--------------------------GYTATMLGRRRYLPDLN 813 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 ++ R +Q + DI+ M+ +A ++L V Sbjct: 814 SDN---RQRREAAERMALNAP------IQGTAADIVKIAMLRVDRALREAGLSSRLLLQV 864 Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 HDEIV E + + M+S + PL + Sbjct: 865 HDEIVLEISPGERDEVETIVRREMSSAVELSA--PLDVSVGVGADW 908 >gi|163841042|ref|YP_001625447.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209] gi|162954518|gb|ABY24033.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209] Length = 912 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 91/671 (13%), Positives = 181/671 (26%), Gaps = 151/671 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 V + + + + H+ + LKA + Sbjct: 362 DVHGIGLS-SEESAAFIPLTGLDEAAEQVLASWLKGSAPKAVHDLK---SALKALSGRGL 417 Query: 89 PI-HRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + T + A L + + + K+ E + + Sbjct: 418 DLDGVVDDTSISAYLIQPERRNYDLADLSLYHLETPMTVSASKDAGQLDLGLEGDDGAQE 477 Query: 145 RNK-PNHREAWRLF-----GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198 + F E + E+ L + + G Sbjct: 478 AVLRAFATQKLSSFFAPILLERNAEQLLTGLEL------------PLARVLSGMELAGVA 525 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256 V TL E ++ V + ++L+T LF E G+ + Sbjct: 526 VSKETLDTLMADFGKTIETAQTEAYAIIGHEV-NLGSPKQLQTVLFDELGMPKTKKIKTG 584 Query: 257 -TTCQRVLSSNKKLTPQAIQV-FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 +T L+ P + A++ + L++++ SD R+ T A+ Sbjct: 585 FSTDAEALADLTTKHPHPFLLQLQAYRDATKLRQT-VEGLIKSIGSDTRVHTTYAQNVAA 643 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG- 373 TGR S QN+P S +R + + Sbjct: 644 -TGRLSSNNPNLQNIPIRSEEGRR-------------------------IRGAFVVGQKS 677 Query: 374 ----KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 + L+ AD + IE R++A ++G++ ++AF+ GEDL+ + FNV P +VT R Sbjct: 678 TKSYETLLTADYSQIEMRIMAHLSGDEALIQAFKDGEDLHRFVGSHIFNVEPQEVTSAMR 737 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 + K M L Y + LN++ Sbjct: 738 SKVKAMSYGLVYG-----LSSFGLSKQLNIS----------------------------- 763 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + K + + V + + + Sbjct: 764 ----------VDEARTLMKDYFDRFGAVRDYLRGVVEQAR-------------------- 793 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + R ++ ++ R +Q + DI Sbjct: 794 ------LDGFTETIESRRRYLPELTSDN---RQLREMSERAALNAP------IQGSAADI 838 Query: 610 LAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLP 662 + M+ ++L VHDE+V E + + +++ M + +P Sbjct: 839 IKRAMLGVDAGIAEAGLESRMLLQVHDELVFEVAEGELDQVQALVIAQM--AVAANLTVP 896 Query: 663 LKAEGYESKRY 673 L + K + Sbjct: 897 LDVQVGIGKSW 907 >gi|325290277|ref|YP_004266458.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271] gi|324965678|gb|ADY56457.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271] Length = 905 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 88/633 (13%), Positives = 178/633 (28%), Gaps = 145/633 (22%) Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109 D + E L + V + + + L + + ++ + A + Sbjct: 401 DKNVLAKWHELLGSPRVFKIMADHKTLYSALAN-EGVRLDGLKY-DLSLAAYLMNPTRSS 458 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 E L + ++ A E + E Sbjct: 459 YQAAELLSGQADELFFSAAREAGLLAHEFENSRKKLEELGLSSLLHELEE---------- 508 Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 L + + +G VD + + ++ + +++++ + Sbjct: 509 --------------PLSIVLAEMERQGISVDREMLEQIGFELEKKIAVIEEDIYQIAGVS 554 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L LF + L + +T L ++ R + Sbjct: 555 -FNINSPQQLGKVLFEQLELPPLKKIKTGYSTDAETLEELAGQHCIVEKILEFRH-LVKL 612 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + L+ + DG++ T Q + + TGR S QN+P +L Sbjct: 613 NSTYVKGLLGQLR-DGKVHTTFQQMV-TATGRLSSTEPNLQNIPIRMEEGRKL------- 663 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 R + S G +L AD + IE RVLA + + ++F+TG Sbjct: 664 ------------------RKVFVPSRGGWELFSADYSQIELRVLAHYSQDPILCQSFQTG 705 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 ED++ T + F V QVT D R K + GL Sbjct: 706 EDVHARTASEVFGVPLEQVTPDMRRKAKAVNF--------------GLMYGLTDFGL--- 748 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 A + + + + Q++S V + L+ Sbjct: 749 ---------------------------ARDIRIPRKEAKFYIERYFQRYSGVKKY---LN 778 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + +E G+ R ++ + T + Sbjct: 779 DSVVNAMETGETRTLLN-----------------------RLRQTPELNHQN---RTVRQ 812 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDE 641 R +Q + DI+ M+ +A +++L VHDE++ E Sbjct: 813 FGQRIAMNSP------IQGTAADIMKLAMIRVDEAMKGLEANLLLQVHDELLLEVSARAL 866 Query: 642 FNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + + M S +PL+ + + Sbjct: 867 PEVAQIVKTEMESA--LLLTVPLQVDCKTGVNW 897 >gi|227541511|ref|ZP_03971560.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182793|gb|EEI63765.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51866] Length = 887 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 85/592 (14%), Positives = 167/592 (28%), Gaps = 131/592 (22%) Query: 94 ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 T + + + + QK + + + Sbjct: 410 HDTAIAGYLLRPGQRTYEIADVYQRHLQKQLPQSD----GQLSLLDDSPSEPLLIEAMAV 465 Query: 154 WRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 L + E++ E L + + D G VD Sbjct: 466 LELVPRLTDELSDIESLELYT------DLEIPLITILAAMEDTGIAVDTHTLEEQLDGFV 519 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK- 268 + ++ L + ++L+ LF L T+ +T + + + K Sbjct: 520 DLVAQEEEAARDLAGDPSLNLSSPKQLQVVLFETFDLPKTKKTKTGYSTAAKEIEALAKK 579 Query: 269 -LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 P + +R S+ L L+ ++ DGR+ T + A TGR S Q Sbjct: 580 TDHPFLQHLLAHR-EYSKMKST-LEGLIRSVGGDGRIHTTFKQTVA-STGRLSSTDPNLQ 636 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEA 386 N+P + + ++ +RS + EG L+ AD + IE Sbjct: 637 NIPVRTDAGKK-------------------------IRSAFVVGEGFETLLTADYSQIEM 671 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RV+A ++ + ++A++ GEDL+ ++ F+V +VT + R K M L Y Sbjct: 672 RVMAHVSEDAGLIQAYKDGEDLHNYVGSKVFDVGIDEVTPELRRRVKAMSYGLAY----- 726 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 GL+ A + + + Sbjct: 727 ---------GLSSYGLAAQLDI------------------------------PQGEAKSI 747 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 ++ ++ V + + + GR Sbjct: 748 MDSYFERFGGVKNYLRSVVDEARK--------------------------DGYTSTLFGR 781 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GY 622 ++ + R +Q + DI+ M+ + Sbjct: 782 RRYLPELTSTN---RIARENAERAALNAP------IQGTAADIIKVAMVRVNRRLDSLKS 832 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + S + M S +PL+ + Sbjct: 833 RVLLQVHDELVLEVAPGELEEVSRIVSEEMDGAIS--LRVPLEVSTGHGTNW 882 >gi|118469541|ref|YP_888130.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155] gi|118170828|gb|ABK71724.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155] Length = 908 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 101/682 (14%), Positives = 196/682 (28%), Gaps = 162/682 (23%) Query: 23 KYAEDVCVILFAFGFDDHPVELWD---CVHDPVMPQVLKEALENTDVTIVAHNSYFERTV 79 Y D + D D + L L + H + Sbjct: 353 AYDADATALAIVAA--DGDGRYIDTSTLTPEDE--AALASWLADPGPPKALHEAK----- 403 Query: 80 LKACFNLDIPIHRWI------CTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELI 130 L D+ W T + A L + + Sbjct: 404 LAMH---DLAGRGWTLRGVTSDTALAAYLVRPGQRSFTLDDLAVRY---------LHREL 451 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQE 184 + L D + +A + + + + + L + S E Sbjct: 452 RAETPEQQQLSLLDDSDGVDEQAVQTVILRACAVLDLADALDQELARIDSLSLLSRMELP 511 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 + + G VD+ + L + + S+ + + ++L+ LF Sbjct: 512 VQRTLAEMEHAGIAVDLGMLEQLQSEFADQIRDAAEAAYSVIGKQI-NLGSPKQLQAVLF 570 Query: 245 LETGLHLEDLTETT---CQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 E + T+T L S + P + +R A+R V ++ L+ ++ Sbjct: 571 DELEMPKTKKTKTGYTTDADALQSLFEKTGHPFLQHLLAHR-DATRLKVT-VDGLLNSVA 628 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 SDGR+ T A+ TGR S QN+P + + Sbjct: 629 SDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEAGRR--------------------- 666 Query: 360 ISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R + EG +L+ AD + IE R++A ++ + ++AF TGEDL+ +R+F+ Sbjct: 667 ----IRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFS 722 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 V +VT + R K M L GL+ Sbjct: 723 VPIDEVTPELRRRVKAMSYGL--------------AYGLS-------------------- 748 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 A + + + + + V + ++ + Sbjct: 749 ----------AYGLAQQLKISTEEAKVQMEQYFDRFGGVRDYLRDVVDQARK-------- 790 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 + GR ++ ++ R Sbjct: 791 ------------------DGYTSTVLGRRRYLPELDSSN---RQVREAAERAALNAP--- 826 Query: 599 ENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLM 651 +Q + DI+ M+N +A I+L VHDE++ E + ++ L M Sbjct: 827 ---IQGSAADIIKVAMINVDQAIKDAGLRSRILLQVHDELLFEVSEGEQGELEQLVREHM 883 Query: 652 TSNPSWAKGLPLKAEGYESKRY 673 + + +PL+ + + Sbjct: 884 GNA--YPLDVPLEVSVGYGRSW 903 >gi|254391547|ref|ZP_05006747.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] gi|197705234|gb|EDY51046.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 905 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 92/646 (14%), Positives = 173/646 (26%), Gaps = 135/646 (20%) Query: 44 LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +D + + + V HN+ V + T + A Sbjct: 374 WFDTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEH-GWRVDGITM-DTALAAYL 431 Query: 103 NGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 AL A+ +A + F Sbjct: 432 VKPGRRSFALDALSVEYLHRELVPAAADGQLAFGTDEHAEADALMAQARAVLDLGDAFTA 491 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + V T + E L + G D A ++ + + Sbjct: 492 RLEE-VGATELLH-------DMELPTSELLARMERHGIAADRAHLESMEHLFAGAVQQAV 543 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKL-TPQAIQ 275 +E + + ++L+ F E L T+T L+ + Sbjct: 544 KEAHATVGH-EFNLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHELPV 602 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +R + L++ + +DGR+ T A+ TGR S QN+P + Sbjct: 603 IMLRHREQARLRST-VEGLIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVPVRTDE 660 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAG 394 +R + EG + L+ AD + IE RV+A ++ Sbjct: 661 GRA-------------------------IRRGFVVGEGFESLMTADYSQIELRVMAHLSQ 695 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ ++AF +GEDL+ T ++ F VA ++V + R K M L Sbjct: 696 DEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSYGL--------------A 741 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 GL+ + + + + + ++ Sbjct: 742 YGLSAFGLSQQLNIEAG------------------------------EARALMDTYFERF 771 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + + T GR D+ Sbjct: 772 GGVRDYLRHVVDEARAT--------------------------GYTATMLGRRRYLPDLN 805 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 ++ R +Q + DI+ M+ +A ++L V Sbjct: 806 SDN---RQRREAAERMALNAP------IQGTAADIVKIAMLRVDRALREAGLSSRLLLQV 856 Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 HDEIV E + + M+S + PL + Sbjct: 857 HDEIVLEISPGERDEVETIVRREMSSAVELSA--PLDVSVGVGADW 900 >gi|326440578|ref|ZP_08215312.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 884 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 92/646 (14%), Positives = 173/646 (26%), Gaps = 135/646 (20%) Query: 44 LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +D + + + V HN+ V + T + A Sbjct: 353 WFDTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEH-GWRVDGITM-DTALAAYL 410 Query: 103 NGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 AL A+ +A + F Sbjct: 411 VKPGRRSFALDALSVEYLHRELVPAAADGQLAFGTDEHAEADALMAQARAVLDLGDAFTA 470 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + V T + E L + G D A ++ + + Sbjct: 471 RLEE-VGATELLH-------DMELPTSELLARMERHGIAADRAHLESMEHLFAGAVQQAV 522 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKL-TPQAIQ 275 +E + + ++L+ F E L T+T L+ + Sbjct: 523 KEAHATVGH-EFNLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHELPV 581 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +R + L++ + +DGR+ T A+ TGR S QN+P + Sbjct: 582 IMLRHREQARLRST-VEGLIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVPVRTDE 639 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAG 394 +R + EG + L+ AD + IE RV+A ++ Sbjct: 640 GRA-------------------------IRRGFVVGEGFESLMTADYSQIELRVMAHLSQ 674 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ ++AF +GEDL+ T ++ F VA ++V + R K M L Sbjct: 675 DEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSYGL--------------A 720 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 GL+ + + + + + ++ Sbjct: 721 YGLSAFGLSQQLNIEAG------------------------------EARALMDTYFERF 750 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + + T GR D+ Sbjct: 751 GGVRDYLRHVVDEARAT--------------------------GYTATMLGRRRYLPDLN 784 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 ++ R +Q + DI+ M+ +A ++L V Sbjct: 785 SDN---RQRREAAERMALNAP------IQGTAADIVKIAMLRVDRALREAGLSSRLLLQV 835 Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 HDEIV E + + M+S + PL + Sbjct: 836 HDEIVLEISPGERDEVETIVRREMSSAVELSA--PLDVSVGVGADW 879 >gi|260887312|ref|ZP_05898575.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] gi|260862948|gb|EEX77448.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] Length = 867 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 78/533 (14%), Positives = 160/533 (30%), Gaps = 132/533 (24%) Query: 165 VTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 + +I+ L+ ++Q L + + G VD H ++ + + Sbjct: 439 AVLLEKIYPVLKERLEEQQLLSLYETMEFPLVEVLAAMEQAGIYVDRVALHEKSREISAQ 498 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKK 268 L E+ L + ++L LF L T+ +T VL + + Sbjct: 499 IAHLTAEIYDL-AKGEFNINSPKQLSAVLFERLDLQPPMGTKKTKTGYSTNAEVLEAMRF 557 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 P ++ + R ++ L+++ ++ + T + TGR S QN Sbjct: 558 DHPILEKILSYRF-WTKLQSTYLDSMEGLISPRTKRIHTSFNQTVTATGRLSSSEPNLQN 616 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEAR 387 +P + +R+ S+G L+ AD + IE R Sbjct: 617 IPVRTEEGR-------------------------QIRALFEPSDGYDALMSADYSQIELR 651 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA ++ ++ L+AF G+D++ T + F V VT D R K + Sbjct: 652 ILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNF---------- 701 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ + + Sbjct: 702 ----GIVYGISDYGLSKDLHI------------------------------SRQEAADYI 727 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 ++ K S + + + + + + + GR Sbjct: 728 ASYFAKCSGIKRFIDGVVEKAHK--------------------------DGFVTTIFGRR 761 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 + ++ T R +Q + DI+ M+ +A Sbjct: 762 RDLPAIKSSNYNQRTL---AERMAMNTP------IQGSAADIIKLAMIKTHRALQEGGFK 812 Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 I+L VHDE+V E ++ + L M + +PL + + + + Sbjct: 813 SRILLQVHDELVLEIMQNEKEQVAELVRDAMENIVQ--LSVPLSVDIHTGENW 863 >gi|330838934|ref|YP_004413514.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] gi|329746698|gb|AEC00055.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] Length = 866 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 78/533 (14%), Positives = 160/533 (30%), Gaps = 132/533 (24%) Query: 165 VTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 + +I+ L+ ++Q L + + G VD H ++ + + Sbjct: 438 AVLLEKIYPVLKERLEEQQLLSLYETMEFPLVEVLAAMEQAGIYVDRVALHEKSREISAQ 497 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKK 268 L E+ L + ++L LF L T+ +T VL + + Sbjct: 498 IAHLTAEIYDL-AKGEFNINSPKQLSAVLFERLDLQPPMGTKKTKTGYSTNAEVLEAMRF 556 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 P ++ + R ++ L+++ ++ + T + TGR S QN Sbjct: 557 DHPILEKILSYRF-WTKLQSTYLDSMEGLISPRTKRIHTSFNQTVTATGRLSSSEPNLQN 615 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEAR 387 +P + +R+ S+G L+ AD + IE R Sbjct: 616 IPVRTEEGR-------------------------QIRALFEPSDGYDALMSADYSQIELR 650 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA ++ ++ L+AF G+D++ T + F V VT D R K + Sbjct: 651 ILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNF---------- 700 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ + + Sbjct: 701 ----GIVYGISDYGLSKDLHI------------------------------SRQEAADYI 726 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 ++ K S + + + + + + + GR Sbjct: 727 ASYFAKCSGIKRFIDGVVEKAHK--------------------------DGFVTTIFGRR 760 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 + ++ T R +Q + DI+ M+ +A Sbjct: 761 RDLPAIKSSNYNQRTL---AERMAMNTP------IQGSAADIIKLAMIKTHRALQEGGFK 811 Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 I+L VHDE+V E ++ + L M + +PL + + + + Sbjct: 812 SRILLQVHDELVLEIMQNEKEQVAELVRDAMENIVQ--LSVPLSVDIHTGENW 862 >gi|227488114|ref|ZP_03918430.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51867] gi|227091976|gb|EEI27288.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51867] Length = 887 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 85/592 (14%), Positives = 167/592 (28%), Gaps = 131/592 (22%) Query: 94 ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 T + + + + QK + + + Sbjct: 410 HDTAIAGYLLRPGQRTYEIADVYQRHLQKQLPQSD----GQLSLLDDSPSEPLLIEAMAV 465 Query: 154 WRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 L + E++ E L + + D G VD Sbjct: 466 LELVPRLTDELSDIESLELYT------DLEIPLITILAAMEDTGIAVDTHTLEEQLDGFV 519 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK- 268 + ++ L + ++L+ LF L T+ +T + + + K Sbjct: 520 DLVAQEEEAARDLAGDPSLNLSSPKQLQVVLFETFDLPKTKKTKTGYSTAAKEIEALAKK 579 Query: 269 -LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 P + +R S+ L L+ ++ DGR+ T + A TGR S Q Sbjct: 580 TDHPFLQHLLAHR-EYSKMKST-LEGLIRSVGGDGRIHTTFKQTVA-STGRLSSTDPNLQ 636 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEA 386 N+P + + ++ +RS + EG L+ AD + IE Sbjct: 637 NIPVRTDAGKK-------------------------IRSAFVVGEGFETLLTADYSQIEM 671 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RV+A ++ + ++A++ GEDL+ ++ F+V +VT + R K M L Y Sbjct: 672 RVMAHVSEDAGLIQAYKDGEDLHNYVGSKVFDVGIDEVTPELRRRVKAMSYGLAY----- 726 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 GL+ A + + + Sbjct: 727 ---------GLSSYGLAAQLDI------------------------------PQGEAKSI 747 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 ++ ++ V + + + GR Sbjct: 748 MDSYFERFGGVKNYLRSVVDEARK--------------------------DGYTSTLFGR 781 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GY 622 ++ + R +Q + DI+ M+ + Sbjct: 782 RRYLPELTSTN---RIARENAERAALNAP------IQGTAADIIKVAMVRVNRRLDSLKS 832 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + S + M S +PL+ + Sbjct: 833 RVLLQVHDELVLEVAPGELEEVSRIVSEEMDGAIS--LRVPLEVSTGHGTNW 882 >gi|15893129|ref|NP_360843.1| DNA polymerase I [Rickettsia conorii str. Malish 7] gi|81527867|sp|Q92GB7|DPO1_RICCN RecName: Full=DNA polymerase I; Short=POL I gi|15620336|gb|AAL03744.1| DNA polymerase I (POL I) [Rickettsia conorii str. Malish 7] Length = 875 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 86/632 (13%), Positives = 184/632 (29%), Gaps = 146/632 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++ L + + + ++ +LK N I ++ + + K + + Sbjct: 375 DIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQKNLFK 431 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 K + +I K + + + + F Y D Sbjct: 432 ----EVLKETWIENIIIESAKIVINFIALYKQTIWELKDNKTFRLYSNID---------- 477 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + ++ + G VD L+ E KL++E+ +L+ + Sbjct: 478 --------LPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTK-FNIG 528 Query: 235 CLEKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + +T +L + + + ++ Sbjct: 529 SPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNT 588 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 ++L + +++ T ++ TGR S QN+P S Sbjct: 589 YTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGN------------ 636 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R IA EG KL+ AD + IE R+L+ +A +AF +D++ Sbjct: 637 -------------QIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIH 683 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + FN+ ++T + R K + G++ Sbjct: 684 TQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS----------- 718 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A + K + ++ V E + Sbjct: 719 -------------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFA- 758 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 +N + GR + + + + R Sbjct: 759 -------------------------SSNGYVTNCFGRKCFVPLIHDKK-----LKQFAER 788 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643 +Q + DI+ M+N K +VL +HDE++ E P + Sbjct: 789 AAINAP------IQGTNTDIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEI 842 Query: 644 A-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++ +M ++ + A +P+ E + Sbjct: 843 ITPIIKKIMENSTNMA--VPIITEIRAGNNWM 872 >gi|227498717|ref|ZP_03928859.1| DNA polymerase I [Acidaminococcus sp. D21] gi|226904171|gb|EEH90089.1| DNA polymerase I [Acidaminococcus sp. D21] Length = 873 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 94/649 (14%), Positives = 183/649 (28%), Gaps = 156/649 (24%) Query: 39 DHPVELWD--CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 DH V +WD ++D M L + + + N E + + Sbjct: 363 DHKVYVWDKALLNDANMLA----LLCDGAIKKIVPNPK-ELYKFMQGKGVSLQ-GVIGDP 416 Query: 97 LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156 + A V K L + + + L Sbjct: 417 SLAAYLYEPGETHYDV--------------KSLAETYL-PASCGGTAQDVEALMPVLEGL 461 Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 E E E L + + G +D + + + + + Sbjct: 462 MAE------------RGLTELYRDIELPLTKVLANMEVNGITLDKGMLDEVTKSMTKQVA 509 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQA 273 L+Q+ + + ++L LF + GL + T++ T VL + P Sbjct: 510 DLEQKAKEEAG-EDFNVNSPKQLGVILFEKLGLPIIKKTKSGYSTDVSVLEQLQGEHPII 568 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + R S+ L L +N + GR+ + A+ TGR S QN+P Sbjct: 569 ETIMEYR-TLSKLLSTYLVALHPLINPNTGRIHTHFNQM-ATVTGRLSSTDPNLQNIPTR 626 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAW 391 + + +R + +G L+ D + +E RV+A Sbjct: 627 TEVGK-------------------------QMRRMFVPGKGYDLLMSCDYSQVELRVMAS 661 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +AG++ + AF G+D++ T + F V VT R+ K + + Sbjct: 662 IAGDERLIDAFRHGQDIHSRTASEIFGVPIEDVTPFMRSKAKTVNFGII----------- 710 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G++ + + + ++ Sbjct: 711 ---YGISDFGL------------------------------GRQLGVPRSEAAQYIDSYF 737 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 +++ V E + + + GR Sbjct: 738 ARYTGVKEYMEGEKKKARE--------------------------MGYVETLFGRRRYLP 771 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625 D+ R +Q + DI+ M++ K ++ Sbjct: 772 DIHAKNF---NRRSFAERTAINTP------IQGTAADIIKIAMLHVAKELKEAGVKSRVL 822 Query: 626 LTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 L VHDE+V E + ++ S + M + +PL A+ K + Sbjct: 823 LQVHDELVLEVVEEEKDKVSAIVKNAMERAVT--LKVPLVADIAFGKTW 869 >gi|117928295|ref|YP_872846.1| DNA polymerase I [Acidothermus cellulolyticus 11B] gi|117648758|gb|ABK52860.1| DNA polymerase I [Acidothermus cellulolyticus 11B] Length = 910 Score = 270 bits (689), Expect = 8e-70, Method: Composition-based stats. Identities = 95/624 (15%), Positives = 176/624 (28%), Gaps = 134/624 (21%) Query: 67 TIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQK 122 V H++ +L A + T + A L + + Sbjct: 399 PKVLHDAK--GPILALAARGWTLRGLA-SDTALAAYLVLPGQRSFDLADLAVRYLRRELR 455 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182 E G + + H A E D V L E Sbjct: 456 AEAGSAGDGQLSFEMAGDEATAAAAGVHARAVLDLAE--VLDAEVAAR--GGARLLRDVE 511 Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 L + + G VDV L+ + +Q + + ++L+ Sbjct: 512 LPLIDVLAAMERAGIAVDVDTLVDLSAELAAHVKATEQAAYQVVG-REFNLGSPKQLQQI 570 Query: 243 LFLETGLHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF E L +T T L + P + +R SR +++L+ Sbjct: 571 LFEELRLPKTKRIKTGYTTDAEALQNLLAQTGHPLLEHLLRHR-DVSRLKAT-VDSLIPM 628 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 ++++GR+ T + A+ TGR S QN+P + Sbjct: 629 VDAEGRIHTTFNQMVAA-TGRLSSQDPNLQNIPIRTAEGRR------------------- 668 Query: 358 QIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R + +G + L+ AD + IE R++A ++ +Q ++AF +G D + T A Sbjct: 669 ------IRQAFVVGKGYEALLTADYSQIEMRIMAHLSQDQALIEAFRSGFDFHAATAASV 722 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F V P QV + R K M GL+ + Sbjct: 723 FGVRPEQVDAEMRRRVKAMNY--------------GLAYGLSAYGLSQQ----------- 757 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 + + + ++ V + + E+ +G Sbjct: 758 -------------------LGITPDEARVLMEEYFRRFGGVRDYLRTV---VERARRDGY 795 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 GR D+ ++ R Sbjct: 796 TETLL-----------------------GRRRYLPDLTSDN---RQRREMAERMALNAP- 828 Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-H 649 +Q + DI+ M+ +A ++L VHDE+V E + + + Sbjct: 829 -----IQGSAADIIKVAMLGVDRALRAAGAKSRLLLQVHDELVLEVAPGERADVEEIVRR 883 Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673 M +PL+ + + Sbjct: 884 EMGHAYE--LSVPLEVSVGVGRTW 905 >gi|288919856|ref|ZP_06414180.1| DNA polymerase I [Frankia sp. EUN1f] gi|288348771|gb|EFC83024.1| DNA polymerase I [Frankia sp. EUN1f] Length = 891 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 91/631 (14%), Positives = 176/631 (27%), Gaps = 130/631 (20%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEA 115 L L + D H+ L + T + A + Sbjct: 372 LGAWLADPDRAKAGHDLKGPMLALAEA-GFTLA-GVTSDTALAAYLALPGQRSFDLADLT 429 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L+ ++++ E + D + + A D + R Sbjct: 430 LRYLHRELKSDTETNGQLTL--DGSGEADEAEADAIRARAALELAAALDGDLERR--SAA 485 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 L E L ++ + G D L + E + + L + Sbjct: 486 RLLREMELPLVHVLARMERAGIAADEEHLTELQKHYSAEVADVAAQAHGLVG-RSFNLGS 544 Query: 236 LEKLKTWLFLETGLHLEDLTET---TCQRVLSSNK--KLTPQAIQVFNNRMRASRSAVLK 290 ++L+ LF E L +T T L+ P + ++R +R Sbjct: 545 PKQLQQILFDELALPKTKKIKTGYTTDADALAWLATQSDHPLIPVLLHHR-DVARLK-TV 602 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 +++L+ ++ GR+ T + A+ TGR S QN+P + Sbjct: 603 VDSLIPMIDDAGRIHTTFNQMIAA-TGRLSSTDPNLQNIPIRTPQGR------------- 648 Query: 351 TSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R + G L+ AD + IE R++A ++G+ ++AF +GEDL+ Sbjct: 649 ------------QIRRAFVVGPGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLH 696 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 A++F++ ++V + R K M GL+ A Sbjct: 697 TFVAAQAFDLPVSEVDPELRRRIKAMSYG--------------LAYGLSAFGLAGQ---- 738 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A+ + V + + Sbjct: 739 --------------------------LGIAPDEAREHMDAYFARFGGVRDFLRGVVDQAR 772 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + + GR D+ ++ + R Sbjct: 773 R--------------------------DGYTETIMGRRRYLPDLTSDNTQRRQM---AER 803 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN 643 +Q + DI+ M+ +A ++L VHDE+V E + Sbjct: 804 MALNAP------IQGSAADIIKIAMLGVDRALRSRDLRSRLLLQVHDELVLEIAPGERVE 857 Query: 644 ASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 L M + +PL+ + Sbjct: 858 VEALVRAEMGAAYE--MSVPLEVSVGSGLTW 886 >gi|326692715|ref|ZP_08229720.1| DNA polymerase I [Leuconostoc argentinum KCTC 3773] Length = 893 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 98/654 (14%), Positives = 191/654 (29%), Gaps = 125/654 (19%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 F + V + D + Q L+ +EN + N + + K L + Sbjct: 348 IGFVIGNPTVGYY-GSRDLSLLQTPELRAVIENPAIIKNVFNVKAQLVMFKR-LGLALQG 405 Query: 91 HRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD--R 145 L+ A + L + + + Q EE A+F E + + Sbjct: 406 VD-FDFLLAAYLLDTTANDNELSTLAQRFDVYVQPDEEIYGKGAKFAVPEDVDRVLMHLG 464 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 K + D ++ E L ++ + RG ++ A Sbjct: 465 QKADALMQLETPTLAALTDHEQMH-LYT------DIELPLAHVLADMEYRGIAINQARLA 517 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262 + + ++ + L G + ++L LF + GL + T+ +T V Sbjct: 518 EIGTDLTGRIQAIEDAIY-LEAGEKFNINSPKQLGVLLFEKMGLPVIKKTKTGYSTAVDV 576 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L P V R ++ ++ L+ +N T ++TGR S Sbjct: 577 LEKLAHQAPIVDYVLQYRQ-LAKLKSTYVDGLLAVVNQKDSKIHTRFLQTLTQTGRLSSV 635 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADL 381 QN+P S +R+ + S ++ AD Sbjct: 636 DPNLQNIPMRSDEGR-------------------------QIRTAFVPSQPDWQIFGADY 670 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV-TKDQRAIGKVMELALG 440 + IE RVLA M G++ +AF GED++ T F + QR K + + Sbjct: 671 SQIELRVLAHMTGDKNMQQAFLNGEDIHAETARAVFGLDSQAPVNAVQRRTAKAVNFGIV 730 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y L ++ ++ +E+ + ++ + Sbjct: 731 YGIS-----DFGLANNLGISRAQAKQFIDTYFKEFPKVHEWMENIKAVAHAQGYVETIAK 785 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R K+ + + + G A K + + Sbjct: 786 R--RRYLPDIHAKNFNLRSF---AERTAMNSPIQGSAADIIKIAMIKV------------ 828 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 L EN +QA Sbjct: 829 ---------------------------------ADALAENNMQA---------------- 839 Query: 621 GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P ++ +++ +M S + +P++ E + K + Sbjct: 840 --RMLLQVHDELIFEAPTSEIPALTALVTKVMDSAVT--LDVPMQVESHYGKTW 889 >gi|291301241|ref|YP_003512519.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728] gi|290570461|gb|ADD43426.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728] Length = 908 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 109/667 (16%), Positives = 190/667 (28%), Gaps = 142/667 (21%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVLKACFNL 86 + A D H L D L L + T H++ F Sbjct: 358 GRLSGLALASDGHHAWLDPSALDEADENALAAWLADPTATKAVHDAKRFGLAC--RSHGW 415 Query: 87 DIPIHRWICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 ++ T + A +L+A+ G+EL R + Sbjct: 416 NLD-GVTSDTALAAYLVRPDLKSDSLEALATRY--------LGRELNPRTAAAQPTLDGL 466 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTR--EIFKRLEPLS--SKEQELWYLDQTINDRGYCV 199 + + N A D+ E+ E + + + G Sbjct: 467 ETDGENEAAANLAALAAATRDLAEVLDGELASHNAAGLLADMELPVMTVLTEMEAIGITA 526 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-- 257 DVA L E + + + R ++L+ LF + G+ T+T Sbjct: 527 DVAHLTGLESTFAAEAAEAVAAAHAAVDQT-FNLRSPKQLQEILFDKLGMPKTKRTKTGY 585 Query: 258 -TCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 T L+ P + +R R ++ L+ + DGR+ T Q A+ Sbjct: 586 TTDADSLAGLYATTQHPVLEAILRHRDREKLKQT--VSGLLAEVAEDGRIHTTYQQNVAA 643 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374 TGR S QN+P + + +R I +EG Sbjct: 644 -TGRLSSKDPNLQNIPVRTDAGRR-------------------------IRQGFIVTEGF 677 Query: 375 -KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 L+ D + IE R++A ++G++ ++AF++GEDL+ T AR FNV P V +QR K Sbjct: 678 ETLMTCDYSQIEMRIMAHLSGDEGLIEAFKSGEDLHTTVAARVFNVEPGSVDAEQRRRIK 737 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 M GL+ + Sbjct: 738 AMSYG--------------LAYGLSAYGLSQQ---------------------------- 755 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + + + + V + + + + Sbjct: 756 --LGITPEEARGLMEEYFTRFGGVRDYLRTVVEEARKA---------------------- 791 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 GR D+ ++ R +Q + DI+ Sbjct: 792 ----GYTETMFGRRRYLPDLNSDN---RQRRDMAERAALNAP------IQGSAADIMKIA 838 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666 M+N +A ++L VHDE+V E + L M S +PL+ Sbjct: 839 MLNVHRALVAAKVKSRVLLQVHDELVLEIAPGEAPEVEKLVRAEMASAAELM--VPLEVS 896 Query: 667 GYESKRY 673 + Sbjct: 897 VGTGGDW 903 >gi|237738344|ref|ZP_04568825.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817] gi|229420224|gb|EEO35271.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817] Length = 905 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 83/638 (13%), Positives = 186/638 (29%), Gaps = 145/638 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + ++E +N + IV +N +L + + + +++A + V Sbjct: 390 KEIQEFFDNYNGEIVTYNLK---NILNR--GISVKNCKLD--MMIAYHLISSQTKENV-- 440 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L + E +F K + +G+Y E + Sbjct: 441 ELPIEHLTGIELDNYADKFGKEKPENISAK-----------EYGKYLCQRTMGLLECYDI 489 Query: 175 LEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L+ L + ++ +G +D + + KL +++ Sbjct: 490 LKEELEDRNLMKVLNEIEMPLIEILSSMEIKGIKIDPEYFSNYEKELGDLIEKLQEKIYE 549 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L LF + L T+ +T + VL K + + Sbjct: 550 EAG-EEFNINSPKQLAEILFFKLNLPPVKKTKTGLSTDEEVLEKLKVDGAEIAKAILEYR 608 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ ++ + + + R+ T +G + TGR S QN+P + + Sbjct: 609 KLAKLKNTYVDAIPKLRDEKDRVHTTFNQIGTT-TGRLSSSDPNLQNIPVKTDEGIK--- 664 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R +A + L+ D + IE RVLA ++G++ +A Sbjct: 665 ----------------------IRQGFVAEKNSVLMGIDYSQIELRVLAQLSGDENLREA 702 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 ++ DL+ T + F ++ + Sbjct: 703 YQNSMDLHSLTARKIFELSDEE-------------------------------------- 724 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + NF + A E + ++ +V Sbjct: 725 -----EVSREERIIAKTINFSIIYGKTAFGLAKELGISQKEASEYIDRYFNQYPKVKGFE 779 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 E+ E T ++G GR + + + Sbjct: 780 KEI---VEFTEKHGYTETF-----------------------FGRRRLIDGINSKN---K 810 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGYDIVLTVHDEIVCET 636 Q R +++Q + +I+ + M+ K G ++L VHDE++ E Sbjct: 811 NIKSQAERMA------VNSVIQGTAAEIIKKVMIEIYKYIKDRDGISLLLQVHDELIFEI 864 Query: 637 PDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + + +PL+ + Sbjct: 865 EKEKLEMYREDIEKIMRESVKF-DSVPLEINTNIGVNW 901 >gi|303327432|ref|ZP_07357873.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3] gi|302862372|gb|EFL85305.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3] Length = 922 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 97/637 (15%), Positives = 175/637 (27%), Gaps = 155/637 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLK------ACFNLDIPIHRWICTLVLARSNGLPSALK 110 L L++ +VA + L L R + A + Sbjct: 419 LCAWLQSARRLVVA-----DLKALLTAAPCWRNLPLGETPPRCFDLGLAAYLLNPEES-- 471 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 G L ++ T E Sbjct: 472 ----DYGWPRLAARWGAALKPEGGGPARLA------LAMAEALEDRLVRDGLRELYNTLE 521 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + L + + RG +D A V E +L E+ + Sbjct: 522 L------------PLTPVLAEMEGRGVAIDAAAFQAFLSDVQHELDRLTAEVYAAAGTT- 568 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + R ++L LF L T+ +T Q+ L + R + + Sbjct: 569 FNIRSAQQLGDVLFKTLNLPSPRKTKGGQASTSQQTLEKLAGRHAVVDSILQFR-KLEKM 627 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 L+ L ++ GR+ T A+ TGR S QN+P Sbjct: 628 RSTYLDPLPRLVDGQGRIHTTFNQ-KATATGRLSSSNPNLQNIPVRGP------------ 674 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 + +R+C IA G+ LV AD + +E RVLA M+ + L AF GE Sbjct: 675 -------------LGKRMRACFIAGPGRTLVSADYSQVELRVLAHMSQDAALLDAFRQGE 721 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T A +++ +V+ DQR K + G+ Sbjct: 722 DIHARTAALIYDLQAGEVSPDQRRNAKTINF--------------GLIYGMG-------- 759 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + E + + ++ + + + + Sbjct: 760 ----------------------AQKLGQELKISTAEAKEFITRYFERLTGLKAFYENVEA 797 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 + G GR + D+ + Sbjct: 798 TAK---RQGYVTTLG-----------------------GRRRLLPDILSAN---GQAFAL 828 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT- 639 R+ ++Q + DI+ M+ + ++L VHDE++ ETP+ Sbjct: 829 ARRQAI------NTVIQGSAADIIKLAMLAVAHDAELRRMDARLLLQVHDELLLETPEAT 882 Query: 640 DEFNASMLYHLMTSNPSW--AKGLPLKAEGYESKRYR 674 E + + LM+S +PL + + Sbjct: 883 AEAAGARVAALMSSVAPGGETLSVPLVVDWGVGHDWG 919 >gi|67459631|ref|YP_247255.1| DNA polymerase I [Rickettsia felis URRWXCal2] gi|14916559|sp|Q9RAA9|DPO1_RICFE RecName: Full=DNA polymerase I; Short=POL I gi|5912337|emb|CAB56067.1| DNA polymerase I [Rickettsia felis] gi|67005164|gb|AAY62090.1| DNA polymerase I (POL I) [Rickettsia felis URRWXCal2] Length = 922 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 87/658 (13%), Positives = 189/658 (28%), Gaps = 151/658 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++ L + + + ++ +LK I ++ + + K + E Sbjct: 375 DIIFNLLTDKSIRKITYSLK---PLLKFYAEQSHEITAIEDLELMQYALSAGLSQKNLFE 431 Query: 115 -------------ALKLSSQKMEEGKELIARFCKGET-------------HECLYDRNKP 148 A + + E A E Sbjct: 432 EALKEDNRHLSKPAYREEFKGDTEALATAAYKSVREDASTGSTSKLPLETKFGKMSNVIN 491 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 F K ++ + + K S+ + + ++ + G VD + L+ Sbjct: 492 ESARIVAEFTSLYKQNI-LELKDNKAFRLYSNIDLPICFILDKMEKIGIKVDANYLNQLS 550 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTETTCQRVL 263 E KL++E+ +L+ + ++L LF + L + +T +L Sbjct: 551 AEFGAEILKLEEEIFALSGTK-FNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEIL 609 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + + + ++ ++L + +++ T ++ TGR S Sbjct: 610 EKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQE 669 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+P S + +R IA EG KL+ AD + Sbjct: 670 PNLQNVPIRSSEGNK-------------------------IRQAFIAEEGYKLISADYSQ 704 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+L+ +A +AF +D++ T + FN+ ++T + R K + Sbjct: 705 IELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHELTSEHRRKAKAIN------- 757 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G++ A + Sbjct: 758 -------FGIIYGIS------------------------------AFGLAKQLNVSNGEA 780 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 K + ++ V E + +N ++ Sbjct: 781 SEYIKKYFAEYKGVQEYMEQTKAFA--------------------------SSNGYVINF 814 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620 GR + + + + R +Q + DI+ M+N + Sbjct: 815 FGRKCFVPLIHDKK-----LKQFAERAAINAP------IQGTNADIIKIAMINLDQEIEK 863 Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 +VL +HDE++ E P+ + ++ +M + S +P+ E + Sbjct: 864 NNLKTRLVLQIHDELLFEVPEDEVELVTPIIKKIMEN--STNMDVPIITEIRVGNNWM 919 >gi|315926202|ref|ZP_07922402.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC 23263] gi|315620646|gb|EFV00627.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC 23263] Length = 656 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 100/715 (13%), Positives = 191/715 (26%), Gaps = 154/715 (21%) Query: 4 LFIDFETRSPIDLTK-CGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMP 54 + DFET + K A + +F + H + Sbjct: 23 VAFDFETAPDNEYRKEPKAALDAHKAHITGVSFSVTEGDAIYVPLAHRVGVNCEDPDALW 82 Query: 55 QVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 LKE E+ DV +AHN FE L + + T+ A+ +K+ Sbjct: 83 AFLKESIFESHDVICIAHNLSFEAMFLYKQ-GIVVQ-EPCYDTIAAAQL-----TMKSKW 135 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 E L ++ + R+ Y D T ++ Sbjct: 136 EFRGLHDSGLKLLATSLFGADMPSFSSVTDGRHFDEMNPQEYETVRYACADSDYTLCLYY 195 Query: 174 RLEPLSSKEQELWYLDQT------------INDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + + + + G VD + L E Sbjct: 196 KFNNWFDRFLPAHRIITEQLESPTAVMVGCMKYNGIPVDRKAMLEKQTEAVAKVDALKAE 255 Query: 222 LESLTYGLVSSSR-CLEKLKTWLFLETGLHLEDLTETTCQ-------RVLSSNKKLT-PQ 272 + LT G+ + K +L+ + GL + TE + ++L P+ Sbjct: 256 INELTGGVNIGANASTSAFKQYLYKDLGLPVLKKTEKNQEAADDAAMQLLEEYCAQHRPE 315 Query: 273 AIQV---FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 +++ + + ++ ++ +NS + TGRW+ QN Sbjct: 316 LVRLFQAVQEYRKWGKLKSTYIDGYLDHVNSATGRIHPDLMPLGTDTGRWAARNPNMQNA 375 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 PR + +R+ ++A G+ ++ D + IE RV Sbjct: 376 PRKTND-------------------------PIGIRNFIVAPPGQIIMSLDFSQIELRVG 410 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-------QVTKDQRAIGKVMELALGYQ 442 A+ + L+ + +G D++ T + F V K+ R I K + Y Sbjct: 411 AFYCRDPKMLETYRSGGDIHAQTTSVVFGVPFEVAVDKNAPNYKEHRTIAKNCNFGVFYG 470 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + QK Sbjct: 471 LFPRGLQKTLR--------------------------------------FKAGLDTSFER 492 Query: 503 CERVKKAWRQKHSRVSELWNELH-QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 C+ + + +S ++ E +A + Sbjct: 493 CKEIIDNLKSGYSGLTTWQEETKARAAKTC---------------------------YAE 525 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---- 617 GR + ++ ++ + VQ + DIL Sbjct: 526 TWMGRRRYLPHMLSSDWGKHSFAER---------CALNTPVQGTAADILKAACARIVAGF 576 Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670 + +L +HDE+V P+ A + M P +P+ AE Sbjct: 577 PERPWLKPILQIHDELVFLLPEERLLEAQQFVKKCMEQQPYPDFDVPIVAEASAG 631 >gi|157265423|ref|YP_001467981.1| DNA polymerase I [Thermus phage P74-26] gi|156905318|gb|ABU96961.1| DNA polymerase I [Thermus phage P74-26] Length = 728 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 112/779 (14%), Positives = 213/779 (27%), Gaps = 202/779 (25%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP--------- 54 + +D ET Y D ++ A + H + Sbjct: 25 VALDTETYGSNPFN-----LYLPDFRLVGVAIATSPTEAWYFPVDHQDFLLRYQPANLPR 79 Query: 55 QVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111 + +++A LE +V HN+ ++R VL ++ + T+V LK Sbjct: 80 EAVRQAVLEALKRPVVYHNAAYDRRVLAVTLDIPLDQTYGDDTMVALHLVDENHPLGLKE 139 Query: 112 VGE------------------------------------ALKLSSQKMEEGKELIARFCK 135 + KL ++ K+ Sbjct: 140 WAKTLLGLEEVNADIEPPELTDEDQVEAVSKNGRRYKKKVHKLKPDWLQRLKDAFLAVHN 199 Query: 136 GETHECLYDRNK---------------------PNHREAWRLFGEYCKGDVTVTREIFKR 174 G + + Y D T +++ Sbjct: 200 GGVSYGALYKLLNRAFQQLKNRGVVSYTGSFPNDFRLFPVDIAAIYALDDAMNTLALWEH 259 Query: 175 LEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELE 223 +E +L L + I RG VD + + + + QE + Sbjct: 260 VEVFFELHPKLHTLYREIELPVNDVMTRATHRGVLVDKEELRRIKETIQARIEEKAQEAQ 319 Query: 224 SLTYGLV--------SSSRCLEKLKTWLFLETGLHL--------EDLTETTCQRVLS--- 264 L L+ + ++L T L+ G + ++T ++L+ Sbjct: 320 ELLKALIGSKASEFTNPLNSPQQLATILYDLLGYPVVETTPNGAPSTSKTAIAKLLTLSP 379 Query: 265 SNKKLTPQAIQVFNNRMR---ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 +KK P A + + ++++E ++ GRL +G + +GR S Sbjct: 380 KDKKKAPLAKAFLEAKQAHEGLKKLLSTYTDSILEEVDPQGRLHTNFNTVG-TVSGRMSS 438 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 QNLPR + + +R +A G V AD Sbjct: 439 SNPNLQNLPR----------------LLPEEVAEKPYLQGIDIRKAFVADPGYIFVSADY 482 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-------QVTKDQRAIGKV 434 A +E V A ++G+ G DL+ T +F V + KD R KV Sbjct: 483 ASMELVVCAAVSGDPTMRDLLNQGRDLHAYTARYAFKVGLDLDDKAFKEQYKDYRQKAKV 542 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + AL Y G + + E + + + + E Sbjct: 543 VNFALIYGGT-----EFTLIKNFGFSEEEAKQLIQGYFEAYPVVKTWMEEVYRELEEKGF 597 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + + + + + + R +P Sbjct: 598 VE-----------------YP-IYGYIKRMD-------------LPQALRKLPKDKWPLV 626 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 NN P R Y + + + ++Q S ++ + + Sbjct: 627 LNN----DPDARKQYYASLRSCQ---------------------NALIQGFSAFVVKDAI 661 Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666 + +A +++ VHDEIV + + + M G+ LKAE Sbjct: 662 VQMQRAFEAEGLDAQVIIQVHDEIVVLAKEEHAERVAQIMVEKMEREV---NGVLLKAE 717 >gi|94986547|ref|YP_594480.1| DNA polymerase I [Lawsonia intracellularis PHE/MN1-00] gi|94730796|emb|CAJ54158.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Lawsonia intracellularis PHE/MN1-00] Length = 868 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 99/603 (16%), Positives = 178/603 (29%), Gaps = 146/603 (24%) Query: 76 ERTVLKACFNL--DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133 + L + IP WI + ++ +L+AR+ Sbjct: 383 DLKSLLRTNGIWRTIPNTHWIDLGLATYLLDP--------------EERDYSWPKLVARW 428 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193 W K T ++ + ++ S E L + + Sbjct: 429 GSVFGLSAGNPGLIALKV--WEQLRNKLK-----TAQLLELMD---SLELPLIPVLADME 478 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +D V L + + G + R ++L LF + L Sbjct: 479 AVGVVLDDQNLKIFLVEVQNSLDHLTETIYHEAGGS-FNIRSAQQLGDILFNQLELPAAK 537 Query: 254 LT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T +T Q VL P + R + + L L + DGR+ T Sbjct: 538 KTRGGQASTSQEVLEKLSGQHPIIDTILEYR-KLEKLRSTYLEPLPRLIGKDGRVHTTFN 596 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 L A+ TGR S QN+P + +RSC Sbjct: 597 QL-ATATGRLSSSNPNLQNIPIRG-------------------------SLGQRMRSCFT 630 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 AS+G L+ AD + +E RVLA + + L AF G D++ T + + + +VT D+R Sbjct: 631 ASQGNLLISADYSQVELRVLAHYSKDPTLLTAFLEGADIHTRTASLLYEKSQEEVTADER 690 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + G+ A Sbjct: 691 RNAKTINF--------------GLIYGMGPQKLAQ------------------------- 711 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 E ++ + + + + + ++++ + ++ Sbjct: 712 -----ELNTTLNEAKKFIQRYFEHLQAIKKFYDQVEHSAKE------------------- 747 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + +GR + D+ + L R R+ I+Q + DI Sbjct: 748 -------YGYVTTIAGRRRLLPDIHSENIQLQALAR---RQAI------NTIIQGSAADI 791 Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLP 662 + M+ K ++L VHDE+V E P+ + + LM++ G P Sbjct: 792 IKIAMLTVHGDTTLAKMDAQLILQVHDELVVEAPEDNAKEVGKRIAMLMSNVTP--GGKP 849 Query: 663 LKA 665 L Sbjct: 850 LIV 852 >gi|86740326|ref|YP_480726.1| DNA polymerase I [Frankia sp. CcI3] gi|86567188|gb|ABD10997.1| DNA polymerase I [Frankia sp. CcI3] Length = 945 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 96/630 (15%), Positives = 175/630 (27%), Gaps = 137/630 (21%) Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPSA---L 109 L L + + AH+ +L LD+P+ T + A L Sbjct: 422 VAALGAWLADPNQPKAAHDVK--GPMLA-LTELDLPLAGVTSDTALAAYLALPGQRSFDL 478 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC-KGDVTVT 168 + + + + R E D + Sbjct: 479 ADLVARYLHRD----LSADPVPGGQQLTLDGSGEADQAHADAVRARACLELADALDADLE 534 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 R L L + + G VD L + E + + + + Sbjct: 535 RRSAATLLRDIE--LPLVTVLAGMERAGIAVDSEHLTELQKHYGGEVSAVAAQAHEIVGR 592 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNK--KLTPQAIQVFNNRMRA 283 + ++L+ LF E GL +T T L+ P + +R Sbjct: 593 P-FNLGSPKQLQQILFDELGLPKTKKIKTGYTTDADALAWLAVQSDHPLLPVLLRHR-DV 650 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 +R +++L+ ++ GR+ T A+ TGR S QN+P + Sbjct: 651 ARLK-TVVDSLIPMIDDIGRIHTTFNQTIAA-TGRLSSADPNLQNIPIRTAEGR------ 702 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R + G L+ AD + IE R++A ++G++ ++AF Sbjct: 703 -------------------QIRRAFVVGAGYETLLTADYSQIEMRIMAHLSGDEGLIEAF 743 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 +GEDL+ A +F + ++V + R K M GL+ Sbjct: 744 GSGEDLHTFVAAEAFGLPVSEVDPELRRRIKAMSY--------------GLAYGLSAFGL 789 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A A+ + V + Sbjct: 790 AGQ------------------------------LGIAPDEAREHMDAYFARFGGVRDFLR 819 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + + + + GR D+ ++ S Sbjct: 820 GVVERARK--------------------------DGYTETILGRRRYLPDLTSDNSQRRQ 853 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 R +Q + DI+ M+ +A ++L VHDE+V E Sbjct: 854 M---AERMALNAP------IQGSAADIIKIAMLGVDRALCAGGYASRLLLQVHDELVLEI 904 Query: 637 PDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665 + L MTS + +PL Sbjct: 905 APGEHDAVERLVRAEMTSA--YTMSVPLDV 932 >gi|323698562|ref|ZP_08110474.1| DNA polymerase I [Desulfovibrio sp. ND132] gi|323458494|gb|EGB14359.1| DNA polymerase I [Desulfovibrio desulfuricans ND132] Length = 888 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 99/593 (16%), Positives = 175/593 (29%), Gaps = 135/593 (22%) Query: 92 RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 +W + A S L+ S F G R H Sbjct: 416 QWFDLSLAAYLLDPESRNYTWA-RLRQSM------------FQDGRPEFAEAARGLHPHS 462 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 + V L L + + G +D A V Sbjct: 463 QGLAALAYMTGIRGQVEGAHLNTLMRELEI--PLIPVLVAMERAGISIDDAAFQAFLNDV 520 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267 + + +L + + G + R ++L LF + G+ T +T +VL + Sbjct: 521 NAQLDELTRSIIG-YAGEEFNIRSSQQLAVVLFDQLGIKAGSKTSTGLRSTANQVLEKIR 579 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 P V R + L L + + DGRL L ++ TGR S Q Sbjct: 580 DQHPIVDAVLEFR-MLEKLRSTYLEPLPKMVGEDGRLHTHFNQL-STATGRLSSSQPNLQ 637 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P +R+C A+EG L AD + IE R Sbjct: 638 NIPIRGVHGPR-------------------------MRACFNAAEGNMLAAADYSQIELR 672 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA + + + AF ED++ T A + + VT D+R K + L Sbjct: 673 VLAHFSKDPELIDAFRHDEDIHARTAALIHDKDISAVTPDERRGAKTINFGL-------- 724 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G+ + A ++ T + Sbjct: 725 ------IYGMGVQKLARELQIKQ------------------------------TEAQEFT 748 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + K + + ++ + + +G GR Sbjct: 749 EKYFAKMATLKAYYDTV---VKDAETHGFVTTLA-----------------------GRR 782 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAG 621 + ++ + N + Q R+ ++Q + DI+ M+ + G Sbjct: 783 RLLPELHSRN---NQLSAQARRQA------VNTVIQGSAADIIKMAMVQAHKDKRLRELG 833 Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P+ + A L +M + +PLK + K + Sbjct: 834 AQLILQVHDELIIEAPEANIKEAGGRLLEIMQTVAK--LDVPLKVDMGVGKNW 884 >gi|258653207|ref|YP_003202363.1| DNA polymerase I [Nakamurella multipartita DSM 44233] gi|258556432|gb|ACV79374.1| DNA polymerase I [Nakamurella multipartita DSM 44233] Length = 902 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 100/640 (15%), Positives = 185/640 (28%), Gaps = 142/640 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPS---ALKAV 112 L + T V H+ T + A P+ T + A L + Sbjct: 377 LAAWFADPTPTKVGHDLK---TAVNALTARGWPVGGVACDTALAAYLALPGQQTFDLGDL 433 Query: 113 GEALKL----SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + G++L E +E R + + + Sbjct: 434 VQRYLHRTLDPEHSTNAGQQL---SLIPEENEGAQTEQDSRDMVRARAIIDLAEA---LE 487 Query: 169 REIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + + + E + + + G VDV L E T + + Sbjct: 488 QHLDSLGQKSLLADIELPVMTVLGEMERDGIAVDVDYLDDLQSTFAAEVTSAAKACYAEI 547 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRM 281 V + ++L+ LF E G+ T+T T L S + P + +R Sbjct: 548 GREV-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALVSLHEQTGHPFLTHLLRHR- 605 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 +R V + L +++ DGR+ T Q A+ TGR S QN+P + Sbjct: 606 DVTRLKVT-VEGLRKSVGDDGRIHTTFQQTVAA-TGRLSSTEPNLQNIPIRTDEGR---- 659 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R + L+ AD + IE R++A ++ ++ ++ Sbjct: 660 ---------------------LIRRAFVPGPQADLLLTADYSQIEMRIMATLSEDEGLIE 698 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +GEDL+ ++F + QVT + R K M L GL+ Sbjct: 699 AFRSGEDLHTFVAMKAFGLPAEQVTPELRRRIKAMSYGL--------------AYGLSAY 744 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + +K + +A+ + V + Sbjct: 745 GLSGQLKI------------------------------SVDEAKEQMEAYFSRFGGVRDY 774 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + + GR D+ ++ Sbjct: 775 LRDTVARARK--------------------------DGYTETIFGRRRYVPDLNSDN--- 805 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 R +Q + D++ M+N + ++L VHDE+VC Sbjct: 806 RQKRAMAERIALNAP------IQGSAADVIKVAMVNVQRRIRAEGLRSRMLLQVHDELVC 859 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E + +L M A +PL+ + Sbjct: 860 EVVADELAVMTELLKQEMGGAYPLA--VPLEVSVGSGANW 897 >gi|260903788|ref|ZP_05912110.1| DNA polymerase I [Brevibacterium linens BL2] Length = 888 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 101/667 (15%), Positives = 188/667 (28%), Gaps = 144/667 (21%) Query: 27 DVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 V + A + D L AL T++ H+S + Sbjct: 341 HGDVRILAVSGAPDEAWVVDLAEAGEADVSKLSSALR--SKTLILHSSKTQIKAW-RSLG 397 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 LD+ T + A + +L + E+ Sbjct: 398 LDVDDVA-GDTALAAYLLVPDQ------RSYELQQ---IALERAGIELSDAESDSGQLAL 447 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLDQTINDRGYCV 199 + + + G + V + +++ + E L + + G V Sbjct: 448 DL-ESDQTAQTHGHRAAALLEVHDILAAKIDEANMSQVYRDIELPLVPVLARMELAGIAV 506 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-- 257 D A L + + V + ++L+T LF E + T+T Sbjct: 507 DEAGLSGLIDEFTKQANASAELAYEAIGHEV-NLGSPKQLQTVLFDELDMPKTKRTKTGY 565 Query: 258 -TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 T L+ K P + R + L++ + DGR+ T Q A+ Sbjct: 566 TTDAEALAELFIKTEHPFLQHLLAYRDSTKLKQT--VVGLLKTVAEDGRIHTTYQQTVAA 623 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-- 372 TGR S QN+P + S +R IA Sbjct: 624 -TGRLSSLDPNLQNIPVRTESGRR-------------------------IREIFIADPHV 657 Query: 373 -GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 +L+ AD + IE R++A ++G+ ++AF+ GEDL+ ++ F V +V R+ Sbjct: 658 DDARLLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSK 717 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K M L Y S GL+ Sbjct: 718 VKAMSYGLVYG---------LSAYGLSRQLA----------------------------- 739 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + + + ++ V + +E+ + Sbjct: 740 ------IGVDEAKNLMEQYFERFGAVKDYLDEIVEQAR---------------------- 771 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 N GR + ++R R +Q + DI+ Sbjct: 772 ----ANGYTETIMGRRRYLPALHSDR---RQLRDMAERAALNAP------IQGSAADIMK 818 Query: 612 EGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 M+ + ++L VHDEI+ + + + + + M S +PL Sbjct: 819 IAMLKVSDRLGDHKSTVLLQVHDEIIVDVHPEEIDSVTQIVTEEMGSAFE--LDVPLDVN 876 Query: 667 GYESKRY 673 + Sbjct: 877 VGTGTSW 883 >gi|62184772|ref|YP_219557.1| DNA polymerase I [Chlamydophila abortus S26/3] gi|62147839|emb|CAH63585.1| putative DNA polymerase I [Chlamydophila abortus S26/3] Length = 869 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 95/656 (14%), Positives = 190/656 (28%), Gaps = 129/656 (19%) Query: 30 VILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 ++ A D V D H + L++ + D +N + LK + I Sbjct: 328 LMGVALACD-EQVYYVDIEHAQDDVITPLRDFFKRKDTEFYGYNIKRDNHALKNA-GIHI 385 Query: 89 PIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + + + + + L + GKE Sbjct: 386 HNITL-DLALAEHLINGGAKISYQTLLVDHGLVESAGKYGKEWGQLSLPILKSPAKPAEY 444 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 + ++ + + E L + TI G +DV Sbjct: 445 FGEFVSHLPKIKKSLLE----ELKVKGLEDLFFNMEMPLEKVLFTIERNGMPLDVEDLQE 500 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266 L + + E L ++ ++ + + ++L L+ + GL D +T VL++ Sbjct: 501 LERTLSEELAILTDDIYTVAGTS-FNIKSPKQLSDVLYNKLGLTPIDKARSTKAEVLAAL 559 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFP 325 ++ R + + L ++ R+ T +G + TGR + Sbjct: 560 LGEHEIVEKILAFR-AIEKLLSTYVKALPRQIDPHTSRIHPTFNQMG-TVTGRLACQDPN 617 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI-ASEGKKLVVADLAGI 384 QN+P S +R + + AD + I Sbjct: 618 LQNIPIRSERGR-------------------------LLRKAFCDTRQNNYFLSADYSQI 652 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R LA ++ ++ AF + ED++ T ++ F+V +VTK QR K + Sbjct: 653 ELRFLAHLSQDESLRLAFASREDVHTFTASQVFHVPLEEVTKQQRMQAKTVN-------- 704 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 G + + + + Sbjct: 705 ------FGIIYG------------------------------QQAYGLSKILKISVSEAQ 728 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 ++ A+ ++ V+ NE + NL + Sbjct: 729 KLIDAYFDRYPAVARFINETINEACE--------------------------NLRVKTLL 762 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NAT 618 GR R N T +R + G +Q + +++ M+ Sbjct: 763 GR---------ERIIDNWTEFSNSRAAS-GRLAVNTRIQGSAAELIKLAMLQLAAALEKR 812 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 K ++L +HDE++ E P+ ++ L +M S +PL K + Sbjct: 813 KLRSRMLLQIHDELIFEVPEEEKEEVQTLVRDIMESAM--ILSVPLVVNILIGKNW 866 >gi|257438461|ref|ZP_05614216.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165] gi|257199040|gb|EEU97324.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165] Length = 859 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 94/655 (14%), Positives = 187/655 (28%), Gaps = 162/655 (24%) Query: 35 FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI-VAHNSYFERTVLKACFNLDIPIHRW 93 + D V + L L++ VT+ V F+ L + + W Sbjct: 347 YAVQDTTVY--PLSE-----EELVSLLDDPKVTLDV-----FDSAPL---YARAMAAGSW 391 Query: 94 -----ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 + A ++ + A C+ Sbjct: 392 GSSIVWDGKLAAYLLDASASHYLLTTL-------ATSYHARSAFSCEEYPDAGFLADLFA 444 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + D +++ ++ E L + + G VD Sbjct: 445 KMKAEITE----NGED-----DLY------NNIEFPLAQVLADMTRTGILVDREGIEAFG 489 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 + E ++ +E + ++L T LF GL T+ +T L Sbjct: 490 VQLRQELDQVLTRIEMEAGTSDFNPNSPKQLGTLLFDTMGLPHGKKTKNGWSTDAETLEK 549 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + + P + R + + L++ + DGR+ A RTGR S Sbjct: 550 LRDI-PLVEDILQYR-ACQKLNSTYVEGLLKVIGEDGRIHTRFNQTEA-RTGRLSSDNPN 606 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P + + +R+ +A G LV AD + IE Sbjct: 607 LQNIPIRTE-------------------------MGSKLRAYFVAKPGCVLVDADYSQIE 641 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA + G+ +AF +G D++ +T A+ +N+ P VT R+ K + + Sbjct: 642 LRILAHVTGDAHMQEAFLSGADIHRSTAAKIYNIRPEDVTPRLRSSAKAINFGIM----- 696 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + + + E Sbjct: 697 ---------------------------------------YGKGAYSLSKDIGVSVKEAEA 717 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + + + + Q + G Sbjct: 718 FLQTYLATFPNIDGYMEKTIADARQC--------------------------GYVSTLFG 751 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TK 619 R ++ +N + + ++ R +Q + D++ M+ K Sbjct: 752 RRRALPELNSNNHNIRASGERMAR---------NTPIQGTAADVIKLAMVRVWRRLRNEK 802 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 ++LTVHDE++ E P+ + A+ + M +A +PL + + K + Sbjct: 803 MESRLILTVHDELIVEAPEAEAEKAAQILREEMEGCVHYA--VPLSTDVHTGKNW 855 >gi|84496608|ref|ZP_00995462.1| putative DNA polymerase I [Janibacter sp. HTCC2649] gi|84383376|gb|EAP99257.1| putative DNA polymerase I [Janibacter sp. HTCC2649] Length = 889 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 102/670 (15%), Positives = 181/670 (27%), Gaps = 147/670 (21%) Query: 28 VCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 V D D + L + L + + H++ L+ + Sbjct: 338 GDVTAVGLATAGDAAAYIDVTELDEDGEKALADWLADAARPKILHDAKGPMHALE-ARGM 396 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + T + A + G+EL Sbjct: 397 PLRGVTM-DTALAAYLVKPDQRSFDLA-----DLVVRHLGREL------KAEEHAGGQGL 444 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRG 196 + + G+ ++ L E L + + G Sbjct: 445 LDFDTDE-EVVGQDAMVRARAVLDLSVPLSEQLEATGGTELLRDIELPLVDILGAMERTG 503 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD L D + + + G + ++L+T LF GL T+ Sbjct: 504 IAVDTDALSALEADFDAKVREAQLDAYEAIGGDEINLGSPKQLQTVLFETLGLPKTRRTK 563 Query: 257 T---TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 T T L+ K P + +R R V + L++++ D R+ T Sbjct: 564 TGYTTDADALTDLYAKTQHPFLEAMLRHRDAM-RLRVT-VEGLIKSVAEDQRIHTTYIQT 621 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 A+ TGR S QN+P + + +R + Sbjct: 622 IAA-TGRLSSTDPNLQNVPIRTEAGRR-------------------------IREVFVVG 655 Query: 372 EGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 +G + L+ AD + IE R++A ++G++ ++AF TGEDL+ AR F V P VT + R+ Sbjct: 656 KGYESLMSADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHRFVGARVFGVEPEDVTAEMRS 715 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K M L GL+ + Sbjct: 716 KVKAMSYGL--------------AYGLSAFGLSKQ------------------------- 736 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + + + + V + E+ T Sbjct: 737 -----LTISTGEAQGLMDEYFARFGGVRDYLREVVGEARAT------------------- 772 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 GR D+ ++ R +Q + DI+ Sbjct: 773 -------GYTATMLGRRRYLPDLTSDN---RQRREGAERMALNAP------IQGSAADII 816 Query: 611 AEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPL 663 M A ++L VHDE+V E + + + L M +PL Sbjct: 817 KLAMKGVDSALRESGAKSRMLLQVHDELVLEVAEGERDDVEALVRAEMGRAVE--MDVPL 874 Query: 664 KAEGYESKRY 673 + Sbjct: 875 DVSVGLGHSW 884 >gi|269956308|ref|YP_003326097.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894] gi|269304989|gb|ACZ30539.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894] Length = 905 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 108/671 (16%), Positives = 190/671 (28%), Gaps = 147/671 (21%) Query: 26 EDVCVILFAFGFDDHPVEL--WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 A V D D Q L L + V H + L Sbjct: 354 AQGDAWGIALAAGGQGVAYDLADITPDDE--QALATWLADPTAPKVLHGAKTAWHALA-A 410 Query: 84 FNLDIPIHRWICTLVLARSNGL---PSALKAV-----GEALKLSSQKMEEGKELIARFCK 135 + + T + A L + G LK+ +G + Sbjct: 411 RGIGLD-GVVFDTELAAYLCYPDQRGYDLGDLVARHLGRELKVGDD-DAQGALDLDLGGA 468 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195 G R A L G+ + E L + + Sbjct: 469 GTQGVREATRAAAVADLAQALAGQLDDRGAASLL---------TDVELPLSAVLARVEAT 519 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G D A L + + + E V + ++L+ LF E + T Sbjct: 520 GIATDTAYLTGLERGFADQVAQAAAEAYDAIGHEV-NLGSPKQLQEVLFGELDMPKTKKT 578 Query: 256 ETT---CQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 +T L+ P + +R A++ V + L+++++ DGR+ T Q Sbjct: 579 KTGYTTDAAALAELYAKTGHPFLEHLLAHR-DAAKLRVT-VEGLLKSVHPDGRIHTTFQQ 636 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 A+ TGR S QN+P + + +R Sbjct: 637 TIAA-TGRLSSTEPNLQNIPIRTEAGR-------------------------QIRRAFRV 670 Query: 371 SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 EG + L+ AD + IE R++A ++G++ ++AF TGEDL+ +R F V PA VT + R Sbjct: 671 GEGFESLLTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHRYVGSRVFGVEPAGVTAEMR 730 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 + K M L Y + Sbjct: 731 SKVKAMSYGLAYG-----LSAFGLS----------------------------------- 750 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + + + + + V E + + E+ G Sbjct: 751 ----QQLGIATGEAQGLMDDYFARFGGVREYLDGV---VEEARATGYTATVL-------- 795 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 GR D+ ++ + R +Q + DI Sbjct: 796 ---------------GRRRYLPDLTSDN---RQRRQMAERMALNAP------IQGSAADI 831 Query: 610 LAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLP 662 + M+ + ++L VHDE+V E + A + M + + +P Sbjct: 832 IKLAMLGVQRELDARGLRSRLLLQVHDELVVEVAPGEREAAEDVLRTQMGAA--YTLDVP 889 Query: 663 LKAEGYESKRY 673 L + + Sbjct: 890 LDVSVGSGETW 900 >gi|219815950|gb|ACL37074.1| DNA polymerase I [uncultured bacterium] Length = 803 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 92/512 (17%), Positives = 163/512 (31%), Gaps = 122/512 (23%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 EQ L + Q IN G +D A L+ + E T L+ ++ + + +++ Sbjct: 392 KIEQPLMEVLQHINATGITLDTAYLAGLSVTMHTELTALEGKIYTHAG-REFNINSPKQM 450 Query: 240 KTWLFLETGLHLE--DLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 LF E GL + T +T + L ++ P ++ R + ++ Sbjct: 451 GEVLFDEMGLKPKNQKKTAGGQRSTKESELEKMREDHPIITEILRYR-ELQKLVSTYIDN 509 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L +++DGRLR T GA+ TGR + QN+P + Sbjct: 510 LPPLVSADGRLRTTFVQTGAA-TGRMASQNPNLQNIPIRTEE------------------ 550 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 S +R +AS G +V D + IE R+ A ++ ++ ++ F GED++ Sbjct: 551 -------SKAIRQAFVASPGYSIVSIDYSQIELRIAAILSRDEKMVEIFARGEDVHTGVA 603 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 R F V P +VT++ R KV+ + Y G A + Sbjct: 604 VRVFGVTPEEVTREMRRKAKVINFGILYGMGVNALRGNL--------------------- 642 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + A+ +R++E E + Sbjct: 643 ---------------------GEGTSREEAQEFFNAYFNTFTRLAEYLEETKAFARK--- 678 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 N GR + + + ++ Q R Sbjct: 679 -----------------------NGYTETLFGRRRHFPGMQSTAPFIR---AQAERMAIN 712 Query: 594 GGKLTENIVQAVSRDILAEGMMNATK--------AGYDIVLTVHDEIVCETPDTDEF-NA 644 VQ + D + M + I+L VHDE++ E + Sbjct: 713 AP------VQGTAADAMRVAMNLVYQYIQTEKKTDDVHILLQVHDELLFEIKNNVLETEI 766 Query: 645 SMLYHLMTSNPSWAK--GLPLKAEGYESKRYR 674 L LM G+P+KA+ + Sbjct: 767 PKLVELMQGVLEGYDTSGVPIKADVAVGPNWG 798 >gi|187250908|ref|YP_001875390.1| DNA polymerase I [Elusimicrobium minutum Pei191] gi|186971068|gb|ACC98053.1| DNA polymerase [Elusimicrobium minutum Pei191] Length = 862 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 84/639 (13%), Positives = 178/639 (27%), Gaps = 146/639 (22%) Query: 46 DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP-IHRWICTLVLARSNG 104 D + + + ++E N + + ++ ++ I + A S Sbjct: 351 DNLTQEELLK-IEELANNKQILKI----SYDVKFTLRALDVTPKEIINCFDVRLAAYSLN 405 Query: 105 LPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 + KA+ + E K+ + + F + Sbjct: 406 PGADIGFKALAAQY---LDVIIEPKDEKEFLTLQNQYIWSLKEVLERDLKEKDQFKIFN- 461 Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 E+ L + + + G VD A ++ ++ E + ++ Sbjct: 462 -----ELEL------------PLITVLLAMEEIGVLVDKAWLENFSKTLEGEIAAIQNDI 504 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279 + ++L LF + L T+ +T + VL L P ++ Sbjct: 505 NKD-AQREINVNSPKQLGALLFDQLKLPSVKKTKTGYSTDEEVLQQLVNLHPIVKKILEY 563 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ ++ L+ + + R+ L G + TGR S QN+P + Sbjct: 564 R-SNAKLKSTYVDNLIMLADGNSRVHTYLDQTG-TVTGRLSSSSPNLQNIPIRTPKGR-- 619 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R +A GK L+ D + I+ R+LA + + + Sbjct: 620 -----------------------MLRRAFVAEGGKTLLSVDYSQIDLRLLAHESQDSVLV 656 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF+ G D++ T A F V V+ + R+ K + + Sbjct: 657 NAFKEGGDIHTKTAAEVFGVMREMVSDEMRSSAKAINFGII------------------- 697 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + + + V E Sbjct: 698 -------------------------YGQGPMGLSQNLNISVREAKEYIDNYFAVYKGVRE 732 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + + G + + Sbjct: 733 WIDKNIALARE--------------------------RGYVKTLLGHIRYLPEFKMGSGH 766 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCE 635 + R IVQ S D++ + M + ++L VHDE++ E Sbjct: 767 M---ASFAQRAAI------NTIVQGGSADVIKKAMADIFNHYKGTEVKMLLQVHDELIFE 817 Query: 636 TPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ A+++ + M +PL AE + Sbjct: 818 LPEKNLLKEAAVIKNKMEHTIE--LKVPLLAEAKTGVNW 854 >gi|292669881|ref|ZP_06603307.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541] gi|292648678|gb|EFF66650.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541] Length = 876 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 86/580 (14%), Positives = 158/580 (27%), Gaps = 129/580 (22%) Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC--KGDVTVT 168 +G+ L + + + C ++ +L Sbjct: 405 ELGDYLLHPEESRRDIERTAFALCGDAAEAPADLSDEQRAEREAQLAARLHSPLQAALAE 464 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + + E L + + G V+ + L +E+ +L Sbjct: 465 AGLLPLYQ---DVELPLVPVLAAMEQTGIYVNRTALERERAAANARIDALAEEIHALAGM 521 Query: 229 LVSSSRCLEKLKTWLFLET------GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L LF + +T L + P +V R Sbjct: 522 -EFNISSPKQLGEVLFERLELAAGTKIKKTKTGYSTNAETLEELRDRHPIVDKVLTYR-M 579 Query: 283 ASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ L+ + + + GR+ + TGR S QN+P + Sbjct: 580 WTKLRSTYLDGIGALIRPETGRVYTNFNQ-TVTATGRLSSSDPNLQNIPVRTEEGRA--- 635 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLK 400 VR+ EG L+ AD + IE R+LA M+G+ + Sbjct: 636 ----------------------VRALFEPGEGYDVLLSADYSQIELRILAHMSGDATLID 673 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G+D++ T A F V VT +QR K + GL+ Sbjct: 674 AFRHGQDIHARTAAEVFGVPIDAVTGEQRRRAKAVNF--------------GIVYGLSDY 719 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + +++ V E Sbjct: 720 GLS------------------------------RDLRIPRKEAAGYIERYFERYHGVREF 749 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 L + NG GR + + Sbjct: 750 ---LDKTVADAHANGYVTTLY-----------------------GRRRELSAINSRNYMQ 783 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 + R +Q + D++ M+ A A I+L VHDE+V Sbjct: 784 RSF---AERMAMNTP------IQGTAADLIKIAMIRAHDALHAAGVKSRILLQVHDELVL 834 Query: 635 ETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 E + + S L M+ A +PL + + K + Sbjct: 835 EAAEAEIAQVSGLLRTAMSGAAELA--VPLAVDVHIGKNW 872 >gi|169629701|ref|YP_001703350.1| DNA polymerase I [Mycobacterium abscessus ATCC 19977] gi|169241668|emb|CAM62696.1| DNA polymerase (POL I) [Mycobacterium abscessus] Length = 902 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 103/678 (15%), Positives = 200/678 (29%), Gaps = 139/678 (20%) Query: 16 LTKCGIC-KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNS 73 L G Y D + A D D + L E L + H + Sbjct: 339 LAVVGTYTPYDGDATAVAIASA--DGDGAYIDTTTVTPDDEAALAEWLADAARPKALHEA 396 Query: 74 YFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKE 128 L + T + A AL + L+ + ++G++ Sbjct: 397 KQAIHALA---GRGWELGGVTSDTALAAYLVRPGQRSFALDDLSLRYLRRELRAEDDGEQ 453 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 ++ + + + + A + DV + R + L+ E + + Sbjct: 454 QLSLLDEDGAGDAKAAQAQMLRARAVIDLAD--ALDVELERI--ESAGLLTDMELPVQRV 509 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G VD +L + ++ + + ++L+ LF E G Sbjct: 510 LAGLESVGIAVDTDHLSSLQNQFASGIREAADAAYAVIGKQI-NLGSPKQLQVVLFDELG 568 Query: 249 LHLEDLTETT---CQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 + T+T L + P + +R +R V ++ L++++ +DGR Sbjct: 569 MPKTKKTKTGYTTDADALQTLFDKTGHPFLEHLLTHR-DVTRLKVT-VDGLLKSVAADGR 626 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + T A+ TGR S QN+P + + E Sbjct: 627 IHTTFNQTIAA-TGRLSSTEPNLQNIPVRTEAGRE------------------------- 660 Query: 364 VRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + G + L+ D + IE R++A ++ ++ ++AF TGEDL+ AR+F V Sbjct: 661 IRDGFVVGAGYRELMTVDYSQIEMRIMAHLSADEGLIEAFNTGEDLHSFVAARAFGVPID 720 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT + R K M GL+ Sbjct: 721 EVTAELRRRVKAMSY--------------GLAYGLS------------------------ 742 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 A + + + + V + + + Sbjct: 743 ------AYGLATQLKISNDEAKEQMDQYFSRFGGVRDYLRAVVDQARK------------ 784 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 + GR D+ + R + Sbjct: 785 --------------DGYTSTVLGRRRYLPDLDS---GDRLRREAAERAALNAP------I 821 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNP 655 Q + DI+ M+ KA ++L VHDE++ E + + + L M S Sbjct: 822 QGSAADIIKVAMITTDKALRDKGLRSRMLLQVHDELLFEVAEGERESLEALVRKTMGSA- 880 Query: 656 SWAKGLPLKAEGYESKRY 673 + +PL+ + + Sbjct: 881 -YPLDVPLEVSVGYGRSW 897 >gi|254518429|ref|ZP_05130485.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] gi|226912178|gb|EEH97379.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] Length = 870 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 94/646 (14%), Positives = 186/646 (28%), Gaps = 134/646 (20%) Query: 38 DDHPVELWDCVHDPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 ++ V L + + + + LK +EN ++T + H+ TVL ++ I Sbjct: 345 NEDKVYLINFKNIYSVNKDEANLALKAIMENEELTKIIHDGKSLVTVLNK-LDISIKTFE 403 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 T + A + + + + G+ I +Y+ K E Sbjct: 404 -FDTAIAAYLIDSARSSYDLLTLINEYLGEDITGEGEILEGKVNFKLRDIYELLKKKIEE 462 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 Y L ++ ++ G+ ++ + L Sbjct: 463 EKMEELYYKVE-------------------HPLIFVLSSMEALGFNINKNMLDDLAIKFK 503 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKL 269 E T+ ++E+ L + ++L LF + L + T+ +T VL + Sbjct: 504 EEITRTEKEIYDL-AEEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLQDK 562 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 ++ R ++ + L ++SDG + + + TGR S QN+ Sbjct: 563 HEIIPKITYYRQ-ITKLNSTYVEGLKNVIDSDGHIHSSFNQTVTT-TGRLSSTEPNLQNI 620 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARV 388 P E +R I EG L+ D + IE RV Sbjct: 621 PIKYEMGRE-------------------------IRKVFIPDEEGDILLSCDYSQIELRV 655 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA M+ ++ + AF+ D++ T + F V VT R+ K + + Y + Sbjct: 656 LAHMSNDENMIDAFKHHSDIHTKTASEVFKVPIEDVTSLMRSRAKAVNFGIVYGISDFSL 715 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 + L++ E + + + + + E+ + R Sbjct: 716 SQ-----DLHITKKEASEYMEIYFERYPKIKGYLDSVMQEAKENGYVLTILNR--RRFIP 768 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + + V L + G A K V + Sbjct: 769 EIKSSNRIVKALG---ERLAMNAPIQGSAADIIKLAMVNV-------------------- 805 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 Y + L M+ L V Sbjct: 806 -YNKLKEKE--------------------------------LKSTMI----------LQV 822 Query: 629 HDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 HDE++ + + + M +PL+ + K + Sbjct: 823 HDELILNVKENELEEVKQIVKDEMEKVLD--MKVPLEVDTNMGKTW 866 >gi|305681930|ref|ZP_07404734.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC 14266] gi|305658403|gb|EFM47906.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC 14266] Length = 885 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 88/635 (13%), Positives = 173/635 (27%), Gaps = 139/635 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL---PSALK 110 + L + L++T H++ +L I + T + A LK Sbjct: 369 KALADYLQSTQ-PKFLHDAKTTYHMLA---GRGITLGGIAHDTALAAYLLNPGQRTYDLK 424 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + + ++ E +L Sbjct: 425 TTYQRHLHRTLEITETGQLSLLDITNTNTLITAAAAILELAATLPTK-----------LA 473 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 LE E L + + G VD+ T+ + ++ Sbjct: 474 TINELELYLDLELPLTTILAEMEATGIAVDIPTLEEQLDTFTNLVTQEETAARTIAGDPN 533 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTP-QAIQVFNNRMRASRS 286 ++L+ LF GL + +T + + + P + + + Sbjct: 534 LLLTSPKQLQVVLFETLGLPKTKKIKTGYSTAAKEIETLAANHPHEFLNHLLAHREYQKM 593 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 L L++A+ DGR+ T Q + TGR S QN+P + + ++ Sbjct: 594 KTT-LEGLIKAVGDDGRIHTTFQQTM-TSTGRLSSTDPNLQNIPIRTPAGKK-------- 643 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +RS L+ AD + IE RV+A ++ + + A+ G Sbjct: 644 -----------------IRSAFTVGTNYETLLTADYSQIEMRVMAHLSNDPGLITAYNNG 686 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 EDL+ A+ F+V P+ VT + R K + L GL+ + Sbjct: 687 EDLHNYVGAKVFDVPPSGVTPELRRKVKALSYGLV--------------YGLSAFGLSQQ 732 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 +++ + + + V + + Sbjct: 733 ------------------------------LNIPAGEAKQIMENYFHRFGGVKHYLDTVV 762 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + + R ++ + T Sbjct: 763 TQARK--------------------------DGYTATLFDRRRYLPELTSTN---RATRE 793 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDT 639 R +Q + DI+ M+ A ++L VHDE+V E Sbjct: 794 NAERAALNAP------IQGTAADIIKIAMLRIHHELKKTNAKSRVLLQVHDELVVEIAPG 847 Query: 640 DEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + L M + + +PL+ + Sbjct: 848 ELTTVKKLIEHEMDNAIT--LKVPLEVSTGHGPNW 880 >gi|295696996|ref|YP_003590234.1| DNA polymerase I [Bacillus tusciae DSM 2912] gi|295412598|gb|ADG07090.1| DNA polymerase I [Bacillus tusciae DSM 2912] Length = 890 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 100/677 (14%), Positives = 188/677 (27%), Gaps = 137/677 (20%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 LF+D E G ++ + V C D + L + L Sbjct: 340 LFLDLE----------GGYQF---GTPRGVGVA-EGERVRYLLCGEDSSWAEGLTQMLRE 385 Query: 64 TDVTIVAHNSYFE---RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 +T++ ++ VL +P L+ A + E Sbjct: 386 PGLTVL-----YDIKSWKVLADRLGFTLPGDA-FDVLLAAYLINPQDGHPDLTEVF---- 435 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 + G + +G R + A K D+ + R ++ + Sbjct: 436 -ERYLGVSVPPLEGRGSPQGEERQRWWALYAAALAGVYPALKRDLEI-RGLWPLYH---N 490 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L ++ + G VD +L + E +L++E+ L + ++L Sbjct: 491 LELPLSFVLAKMERTGVRVDATRLRSLGETFSTEIARLEEEIYKLAGTT-FNLNSPKQLA 549 Query: 241 TWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + GL + T+ +T VL ++ + R + + L++ Sbjct: 550 EILFDKLGLPPQKKTKTGYSTGADVLEKLAPYHEIVQRILDWRQ-LIKLQSTYIEGLLKV 608 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 + + T + TGR S QN+P L Sbjct: 609 IRPETGKIHTCFQQAVTATGRLSSTDPNLQNIPVRVEEGRRL------------------ 650 Query: 358 QIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 R I SE G K+V AD + IE RVLA + + ++AF D++ T A Sbjct: 651 -------RQAFIPSESGWKIVSADYSQIELRVLAHFSKDPALVQAFRDDLDIHARTAAEV 703 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F V QVT R K + + Y + L + ++ Sbjct: 704 FEVPQEQVTPGMRRQAKAVNFGIVYGIS-----DYGLSQNLGIPRKEAAEFIARYFAKFP 758 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 +++ ++ +G R + + + T G Sbjct: 759 RVKSYMEETVAAARKNGFVTTLLGR--RRYLPDIHSSNYNLRSF---AERTAMNTPIQGS 813 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 A KR V + + + R+ + V + + + Sbjct: 814 AADIIKRAMVEVDRRLTEGDF--------RAKMLLQVHDELVFEVPPEEVGALQ------ 859 Query: 597 LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPS 656 D++ + M S S Sbjct: 860 -----------DMVKQAM-------------------------------------ESAVS 871 Query: 657 WAKGLPLKAEGYESKRY 673 +PLK + + + Sbjct: 872 --LDVPLKVDIHAGDNW 886 >gi|301165634|emb|CBW25205.1| DNA polymerase I [Bacteriovorax marinus SJ] Length = 883 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 91/688 (13%), Positives = 185/688 (26%), Gaps = 157/688 (22%) Query: 10 TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIV 69 T +D+ + + D + + + + + + + TD V Sbjct: 325 TYLGLDVQYTNLDTRSLD--IHSLSISKNKNEAFYIKEEQAKPLLEKILT----TDTLKV 378 Query: 70 AHNSYFERTVLKAC-FNLDIPI-HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 + + L +I I V A+ P +K Sbjct: 379 ---ATADYKSLLYYSLRNEIEISAEVFDV-VQAQFVANPG-------------EKNTIES 421 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177 + E + + + L Sbjct: 422 LSEKFLGSSIPAFEKKKPLPSENEEDLVQEISTAR--AHSCFRVSEFLLEELERKELLNV 479 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + +L + + G ++ A + + + +L ++ + V + + Sbjct: 480 FHDIDNKLTPVLAAMEYEGVHINKAFFSEYEKELQTKLDELQASVDKFSKEPV-NLNSPK 538 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT-PQAIQVFNNRMRASRSAVLKLNT 293 ++ LF E L + T+ +T VL + + + + Sbjct: 539 QVGVLLFEELELPVGKKTKTGYSTDSSVLEDLAAKGLSEVPALILEYREVGKILSTYVKA 598 Query: 294 LVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + E +N G++ A+ TGR S QN+P S Sbjct: 599 IPELLNEASGKIHTHFNQNVAA-TGRLSSNHPNLQNIPIRSELGRR-------------- 643 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 VR IA GK L+ AD + +E R+LA + ++ + AF+ G D++ T Sbjct: 644 -----------VRKGFIAGPGKILLAADYSQVELRLLAHFSNDKTMIDAFKKGVDIHRRT 692 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 + V +V + R+ K + L Sbjct: 693 ASEIMGVPVEEVGSNDRSKAKAVNFGLM-------------------------------- 720 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 ++ A + + ++ S V + L + + Sbjct: 721 ------------YGQSSFGLAAALKIPRKEAKEYITNYFERFSSVKGYLDHLKE---ECE 765 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 + G AI + GR D+ + T R Sbjct: 766 KTGYAITLK-----------------------GRKRYLADIHSTN---RTIKANAERVAI 799 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASM 646 +Q + DI+ M+N K ++L VHDE++ E +++ Sbjct: 800 NSP------IQGTAADIIKLAMINIQKVLDDKKLKSKMILQVHDELIFEVVESELEEMKT 853 Query: 647 L-YHLMTSNPSWAKGLPLKAEGYESKRY 673 + M S +PL + + Sbjct: 854 ILKDGMEKVVS--LSVPLDVDMGVGVNW 879 >gi|157265305|ref|YP_001467864.1| DNA polymerase I [Thermus phage P23-45] gi|156905200|gb|ABU96844.1| DNA polymerase I [Thermus phage P23-45] Length = 728 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 111/779 (14%), Positives = 213/779 (27%), Gaps = 202/779 (25%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP--------- 54 + +D ET Y D ++ A + H + Sbjct: 25 VALDTETYGSDPFN-----LYLPDFRLVGVAIATSPTEAWYFPVDHQDFLLRYQPANLPR 79 Query: 55 QVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111 + +++A LE +V HN+ ++R VL ++ + T+V LK Sbjct: 80 EAVRQAVLEALKRPVVYHNAAYDRRVLAVTLDIPLDQTYGDDTMVALHLVDENHPLGLKE 139 Query: 112 VGE------------------------------------ALKLSSQKMEEGKELIARFCK 135 + KL ++ K+ Sbjct: 140 WAKTLLGLEEVNADIEPPELTDEDQVEAVSKNGRRYKKKVHKLKPDWLQRLKDAFLAVHN 199 Query: 136 GETHECLYDRNK---------------------PNHREAWRLFGEYCKGDVTVTREIFKR 174 G + + Y D T +++ Sbjct: 200 GGVSYGALYKLLNRAFQQLKNRGVVSYTGSFPNDFRLFPVDIAAIYALDDAMNTLALWEH 259 Query: 175 LEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELE 223 +E +L L + I RG VD + + + + QE + Sbjct: 260 VEVFFELHPKLHALYREIELPVNDVMTRATHRGVLVDKEELRRIKETIQARIEEKAQEAQ 319 Query: 224 SLTYGLV--------SSSRCLEKLKTWLFLETGLHL--------EDLTETTCQRVLS--- 264 L L+ + ++L T L+ G + ++T ++L+ Sbjct: 320 ELLKALIGSKASEFTNPLNSPQQLATILYDLLGYPVVETTPNGAPSTSKTAIAKLLTLSP 379 Query: 265 SNKKLTPQAIQVFNNRMR---ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 +K+ P A + + ++++E ++ GRL +G + +GR S Sbjct: 380 KDKRKAPLAKAFLEAKQAHEGLKKLLSTYTDSILEEVDPQGRLHTNFNTVG-TVSGRMSS 438 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 QNLPR + + +R +A G V AD Sbjct: 439 SNPNLQNLPR----------------LLPEEVAEKPYLQGIDIRKAFVADPGYIFVSADY 482 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-------QVTKDQRAIGKV 434 A +E V A ++G+ G DL+ T +F V + KD R KV Sbjct: 483 ASMELVVCAAVSGDPTMRDLLNQGRDLHAYTARYAFKVGLDLDDKAFKEQYKDYRQKAKV 542 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + AL Y G + + E + + + + E Sbjct: 543 VNFALIYGGT-----EFTLIKNFGFSEEEAKQLIQGYFEAYPVVKTWMEEVYRELEEKGF 597 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + + + + + + R +P Sbjct: 598 VE-----------------YP-IYGYIKRMD-------------LPQALRKLPKDKWPLV 626 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 NN P R Y + + + ++Q S ++ + + Sbjct: 627 LNN----DPDARKQYYASLRSCQ---------------------NALIQGFSAFVVKDAI 661 Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666 + +A +++ VHDEIV + + + M G+ LKAE Sbjct: 662 VQMQRAFEAEGLDAQVIIQVHDEIVVLAKEEHAERVAQIMVEKMEREV---NGVLLKAE 717 >gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110] gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110] Length = 662 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 118/719 (16%), Positives = 214/719 (29%), Gaps = 175/719 (24%) Query: 8 FETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELW---DCVHDPVMPQVLKEALE 62 ET + + D+ G+ + + L + PV L H L+ +E Sbjct: 63 LETHTVVGLDIETTGLDPHTS--EISLIQIAAPNRPVILIEFRSITHKES----LRRFIE 116 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAV--GEALKL 118 + + V HN FE L ++ WI T+++A+ GLP L+ L + Sbjct: 117 HHKIPKVGHNLAFEIQFLTKHLGINPVKTAWIDTMLMAQLLAAGLPPTLEDDIKAGVLPI 176 Query: 119 SS--QKMEEGKELIARFCKGETHECLYDR----------NKPNHREAW-----RLFGEYC 161 + Q ++ K+L + R +K W + +Y Sbjct: 177 PNLNQSIKNKKKLKQELNRNLPGSYSLMRVAARELGYSLDKSLQVSDWGKPLTQEQLQYA 236 Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYL---------DQTINDRGYCVDVALAHTLNQIVD 212 D V + + Q + + G +D+ L + ++ Sbjct: 237 ANDAAVVLPLRDTFRSKIIENQLADAIQVELGALARVAQMGLMGMGLDLDRWGELAKEIE 296 Query: 213 VERTKLDQELESLTYGLVSSSR-----------CLEKLKTWLFLETGLHLEDLTETTCQR 261 R + + + E++ L G+H T +T + Sbjct: 297 TRREDAAKIACEVLKPDHAQLNLFGGEASINLDSNEQVIAAL-ARLGIH----TNSTSKD 351 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWS 320 L + P+ + R S++ L +N R+ + + A+ GR+S Sbjct: 352 TLDKLSENHPEVFTIIEYRH-WSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRAAS-GRFS 409 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380 Q +PR RSC + + G KL++AD Sbjct: 410 FSNPNLQQIPR-----------------------------ERQYRSCFVPASGYKLIIAD 440 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+ A +A + + A+ +DL+ T A +VTK +R +GK + L Sbjct: 441 YSQIELRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKPLDEVTKQERQLGKAVNFGLI 500 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y GA + A E Sbjct: 501 YGMGATKLRIYA--------------------------------------ETNYGVKMSI 522 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +R + + + + + + + + + + Sbjct: 523 EEAQRFRDNFFKGYPGLHQWHQDT------------------------AFKLRTTKVKDI 558 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---- 616 SGR ++D L VQ S DI + Sbjct: 559 RTLSGRLRRWKDEPP------------------LTSLLNTPVQGTSADITKLALHKLNTD 600 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPS-WAKGLPLKAEGYESKRY 673 + G ++ VHDEIV E P+ S ML M S + K +P+ E + + Sbjct: 601 LDELGGFPIVVVHDEIVLEVPEVHVAEGSTMLEEAMISAGKRFLKSVPVVVEATIADTW 659 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 93/559 (16%), Positives = 178/559 (31%), Gaps = 99/559 (17%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW---DCVHDPVMPQVLKE 59 + +D ET T + L + PV L H L+ Sbjct: 68 VVGLDIETTGLDPHTS----------EISLIQIAAPNRPVILIEFRSITHKES----LRR 113 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAV--GEA 115 +E+ + V HN FE L ++ WI T+++A+ GLP L+ Sbjct: 114 FIEHHKIPKVGHNLAFEIQFLTKHLGINPVKTAWIDTMLMAQLLAAGLPPTLEDDIKAGV 173 Query: 116 LKLS--SQKMEEGKELIARFCKGETHECLYDR----------NKPNHREAW-----RLFG 158 L + +Q ++ K+L + R +K W + Sbjct: 174 LPIPNLNQSIKNKKKLKQELNRNLPGSYSLMRVAARELGYSLDKSLQVSDWGKPLTQEQL 233 Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYL---------DQTINDRGYCVDVALAHTLNQ 209 +Y D V + + Q + + G +D+ L + Sbjct: 234 QYAANDAAVVLPLRDTFRSKIIENQLADAIQVELGALARVAQMGLMGMGLDLDRWGELAK 293 Query: 210 IVDVERTKLDQELESLTYGLVSSSR-----------CLEKLKTWLFLETGLHLEDLTETT 258 ++ R + + + E++ L G+H T +T Sbjct: 294 EIETRREDAAKIACEVLKPDHAQLNLFGGEASINLDSNEQVIAAL-ARLGIH----TNST 348 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTG 317 + L + P+ + R S++ L +N R+ + + A+ G Sbjct: 349 SKDTLDKLSENHPEVFTIIEYRH-WSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRAAS-G 406 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R+S Q +PR RSC + + G KL+ Sbjct: 407 RFSFSNPNLQQIPR-----------------------------ERQYRSCFVPASGYKLI 437 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 +AD + IE R+ A +A + + A+ +DL+ T A +VTK +R +GK + Sbjct: 438 IADYSQIELRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKPLDEVTKQERQLGKAVNF 497 Query: 438 ALGYQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 L Y GA + A T G+ ++ ++ + + + + ++D Sbjct: 498 GLIYGMGATKLRIYAETNYGVKMSIEEAQRFRDNFFKGYPGLHQWHQDTAFKLRTTKVKD 557 Query: 497 LFIGTACERVKKAWRQKHS 515 + + W+ + Sbjct: 558 I---RTLSGRLRRWKDEPP 573 >gi|154502707|ref|ZP_02039767.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149] gi|153796590|gb|EDN79010.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149] Length = 871 Score = 266 bits (681), Expect = 7e-69, Method: Composition-based stats. Identities = 93/656 (14%), Positives = 179/656 (27%), Gaps = 149/656 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALEN---TDVTIVAHNSYFERTVLKACFNL--D 87 A + V C D M L L + + V F+ LK + Sbjct: 346 IALAYGKDQVYSIACSMDTDM-DALFAQLSDVARSAGRFV----MFD---LKKYLPVLGA 397 Query: 88 IPIHRWICTLVLARSNGL---PSALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLY 143 + V A + V E L L Sbjct: 398 VCQKNCFDATVAAYLLNPLKNDYTYEDVAREQLGLMMD---------------------- 435 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL--DQTINDRGYCVDV 201 D+ + + + Y + + ++ + E E+ + + G ++ Sbjct: 436 DKADEWTKSCYEAYTAYAASE-KLMEKLKEEQMDRLFLEIEMPLVFTLFDMEQAGVRIEA 494 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258 + + + +L+ E+ + + ++L LF + + T+ +T Sbjct: 495 EELKKYGEQLGEQIVQLESEIYEMAG-ENFNINSPKQLGVILFEKLQMPHAKKTKTGYST 553 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL P ++ R ++ + L + DGR+ GT + TGR Sbjct: 554 AADVLEKLAPEFPIVDKILEYRQ-LTKLKSTYADGLANYIGPDGRIHGTFNQ-TITATGR 611 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378 S QN+P + +R + EG + Sbjct: 612 ISSTEPNLQNIPVR-------------------------MELGRLIRKVFVPQEGYVFID 646 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R+LA +G+ ++A+ +D++ T ++ F +VT QR K + Sbjct: 647 ADYSQIELRILAHCSGDAHLIQAYREAQDIHRMTASQVFKTPFDEVTDLQRRNAKAVNFG 706 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L++ S E + + F + E Sbjct: 707 IVYGIS-----SFGLSQDLSITRKEASQYIESYFETYPGIKKFLDDSVTHAKEEGYAVTL 761 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 G R + + + G A K + + Sbjct: 762 FGR--RRPIPELKSSNFMQRNFG---ERVAMNAPIQGTAADIMKIAMIGVN--------- 807 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R++ R + M+ Sbjct: 808 ------------RELKEKR--------------------------------MKSRMI--- 820 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 L VHDE++ ET + + M + S +PL A+ K + Sbjct: 821 -------LQVHDELLIETHPDEIETVKEILKRQMETAAS--LDVPLIADMQVGKNW 867 >gi|325662096|ref|ZP_08150714.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471545|gb|EGC74765.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium 4_1_37FAA] Length = 356 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 109/400 (27%), Positives = 170/400 (42%), Gaps = 64/400 (16%) Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT- 348 K + A +D R RG QF GA+RTGRW+G + QNLP+ + + + + Sbjct: 6 KYQAMQNAACTDHRTRGMFQFYGANRTGRWAGRLIQLQNLPQNHMDDLDAARELVRIGDY 65 Query: 349 --SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D +S +R+ IA G K VAD + IEARV+A +AGE W+ F+ G Sbjct: 66 DSLSMLYDDIPDTLSQLIRTAFIAKPGYKFYVADFSAIEARVIAHLAGESWRADVFKNGG 125 Query: 407 DLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 D+Y + ++ F+V + R GK+ ELALGY G A + M Sbjct: 126 DIYCASASQMFHVTVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG------------ 173 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 A+E + + AWRQ + + LW + Sbjct: 174 ----------------------------ALEMGLTEDELQPLVDAWRQSNPNIVALWWDF 205 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNT 582 A + I+ + + + L++ LPSGR L Y +G N+ + Sbjct: 206 DTAIKNAIKMHCSTASHG------IKFTWRSGMLLITLPSGRKLTYVKPRIGENKFGGES 259 Query: 583 -------TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 T++ R YG K EN+VQA+SRD+L M + I VHDE++ E Sbjct: 260 VTYEGIGATKKWERLEIYGPKFVENVVQAISRDLLMNAMKTLSH--CFICGHVHDELIIE 317 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +++ + +L M P W + L+A+GY ++ Y+K Sbjct: 318 C--SEKVSLEVLCQQMARTPDWMPDILLRADGYVTEFYKK 355 >gi|269218430|ref|ZP_06162284.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332] gi|269211541|gb|EEZ77881.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332] Length = 882 Score = 266 bits (680), Expect = 9e-69, Method: Composition-based stats. Identities = 97/667 (14%), Positives = 174/667 (26%), Gaps = 154/667 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A G + + L L + V H + L +++ R Sbjct: 341 VAVGAPGGKAWV---RQWKDDAEALGAFLADPGRPKVLHGAKGAGHAL-RNIGVELDGVR 396 Query: 93 WICTLVLARSNGLP---SALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 TL+ A L + L + + L + + Sbjct: 397 -RDTLLQAYLLHPDQRVYDLDDLVIRYLGREIEGRKSPATLFDDVDSDDGAAAAAALVEL 455 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 L D + E + + D G VD L L Sbjct: 456 ADAFDSELAER--GEDGAL-----------LDLEMAVSRTLGEMEDAGIAVDEGLLEQLR 502 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSS 265 Q D + G V + ++L+ LF + GL ++ T L++ Sbjct: 503 QDFDGRVFAAARSAYDAIGGEV-NLSSPKQLQEVLFDQLGLPPTRKMKSGHTTNADALAN 561 Query: 266 NK------------KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 + +R + L ++ DGR+ T Q A Sbjct: 562 LAVSIAGREDDKALAGQQFLASLLEHRDAIKLRQS--VVGLQRSVR-DGRIHTTFQQ-TA 617 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGR S QN+ + +R+ + EG Sbjct: 618 AATGRLSSTDPNLQNIHARTAEGR-------------------------SIRAAFVPGEG 652 Query: 374 KK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + ++ AD + IE R++A ++G+ ++AF G DL+ +R + V +VT D R+ Sbjct: 653 YESIMTADYSQIEMRLMAALSGDVELIEAFREGADLHTYVASRVYGVPEEKVTADDRSHI 712 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K M L Y + L Sbjct: 713 KAMSYGLAYG-----LSAYGLSKQL----------------------------------- 732 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + + RV + L Q + Sbjct: 733 ----RISVAQAQALMDDYFSRFGRVRTYLDSLVQEARK---------------------- 766 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 GR D+ + R +Q + D++ Sbjct: 767 ----EGYTQTILGRRRYLPDLNSTN---RQAREAAERMALNAP------IQGSAADVIKL 813 Query: 613 GMMNA----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667 M+ + ++L VHDE+V E + + M + A +PL Sbjct: 814 AMVAVVDSMKEMRSRVLLQVHDELVLEIAPGERDAVEAVVRREMENAVELA--VPLSVGI 871 Query: 668 YESKRYR 674 +R Sbjct: 872 GVGSSWR 878 >gi|239940456|ref|ZP_04692393.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] gi|239986939|ref|ZP_04707603.1| DNA polymerase I [Streptomyces roseosporus NRRL 11379] gi|291443887|ref|ZP_06583277.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] gi|291346834|gb|EFE73738.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] Length = 903 Score = 266 bits (680), Expect = 9e-69, Method: Composition-based stats. Identities = 100/649 (15%), Positives = 177/649 (27%), Gaps = 140/649 (21%) Query: 44 LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 D + + + V HN+ VL + T + A Sbjct: 371 WLDPTQLEEADEQAFAAWVSDPARPKVLHNAKNVMRVLPEH-GWQLEGVTM-DTALAAYL 428 Query: 103 NGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 AL A+ G+EL D + Sbjct: 429 VKPGRRSFALDALAVEY--------LGRELAPAAAADGQLAFGADDRAEQDALMAQARAV 480 Query: 160 YCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 GD T + + E L + G D A + Q + Sbjct: 481 LDLGDAFTT-RLKEVGAAELLHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQQ 539 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK-----LTPQ 272 +E + + ++L+ LF E GL T+T + Sbjct: 540 AVKEAHAAVG-REFNLGSPKQLQEILFNELGLPKTKKTKTGYTTDADALAWLAAQTEHEL 598 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + + +R + ++ V + L++ + +DGR+ T A+ TGR S QN+P Sbjct: 599 PVLMLRHREQ-AKLRVT-VEGLIKTIATDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVR 655 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAW 391 + +R + EG L+ AD + IE RV+A Sbjct: 656 TDEGRA-------------------------IRRGFVVGEGFETLMTADYSQIELRVMAH 690 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ + ++AF +GEDL+ T ++ F V V + R K M L Sbjct: 691 LSEDAGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGL------------ 738 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 GL+ + + + A + + Sbjct: 739 --AYGLSAFGLSQQLNIDPA------------------------------EARVLMDTYF 766 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ V + + + + T GR Sbjct: 767 ERFGGVRDYLHRVVEEARAT--------------------------GYTETILGRRRYLP 800 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIV 625 D+ ++ R +Q + DI+ M+ KA ++ Sbjct: 801 DLNSDN---RQRREAAERMALNAP------IQGTAADIVKVAMLRVDKALTEAGLTSRML 851 Query: 626 LTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 L VHDEIV E + + M + PL K + Sbjct: 852 LQVHDEIVLEIAKGERKQVEEILRHEMANAVE--LRAPLDVSVGVGKDW 898 >gi|206889818|ref|YP_002249284.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741756|gb|ACI20813.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii DSM 11347] Length = 838 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 91/627 (14%), Positives = 189/627 (30%), Gaps = 150/627 (23%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGLPSALKAVGE 114 + E L ++++ + +N+ LK N + + + +++A Sbjct: 345 RVNEIL-SSEILKIIYNAK---EALKKLKNSGLKLSPPYFDLMIVAYLINPNRG------ 394 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFK 173 + + N + + L+ + K E ++ Sbjct: 395 KYNIDE-----------LILEYTGKFYENAENINFY--MFELYEKLNKELKEKELENLYF 441 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 E L + + + G V++ TL + + +E K+ +++ ++ + Sbjct: 442 ------DIEMPLIEVLFDMEETGIKVNIEKLETLTKHISMELDKIKEKIYTIAGT-EFNI 494 Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L L+ GL + +T VL +V N R ++ Sbjct: 495 NSPKQLAEVLYDRLGLKTRKRGKKARSTEMEVLEELAIQHELPHEVINYR-TLNKLLTGY 553 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L + +N + + T + TGR QN+P Sbjct: 554 LIPLRDYINPETKRIHTKWSQTVAGTGRIVSSEPNLQNIPVKGE---------------- 597 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 ++ +R I G + AD + IE R+LA M+ + +KAF G+D++ Sbjct: 598 ---------WAEFLREVFIPENGYMFLSADYSQIELRLLAHMSEDPALIKAFLDGKDIHT 648 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + F++ VT + R I K + + + G++ + +K Sbjct: 649 ATASEIFSIPENAVTDEHRRIAKTVNFGI--------------SYGISPFGLSESIKI-- 692 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 E + + + ++ V + E ++ Sbjct: 693 ----------------------------PYEKAEELIELYFLRYPMVRKFIEETISFAQK 724 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 N + GR ++ + +L Q R Sbjct: 725 --------------------------NGYVRTLFGRIRPLPEINSPNQFLR---MQSERM 755 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA 644 VQ + DI+ M+ K I+L +HDEIV E Sbjct: 756 AVNAR------VQGTAADIIKIAMIRIYNRLKKEKLNAKIILQIHDEIVLEVEQKVIEKV 809 Query: 645 SMLYH-LMTSNPSWAKGLPLKAEGYES 670 S + M ++ +PL+ + Sbjct: 810 SEIVQNEMK---DFSLSVPLEVNVFSG 833 >gi|42520815|ref|NP_966730.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410555|gb|AAS14664.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila melanogaster] Length = 858 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 85/650 (13%), Positives = 180/650 (27%), Gaps = 146/650 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 + + + + + ++ L + V + HN R + ++ + Sbjct: 327 LSLSYSESNIFYIEQDSIQDALIIINLTLLSNGVLKIIHNIKEIRKIF---PAIEKMLDS 383 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 ++++ +L + + E F + +E Sbjct: 384 VDDLMIMSY------SLDTGKHDHSIPNIVAHNLSENAEIFSAKTLIAIHEKLKQRLFQE 437 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 I++R + + + G +++ L+ Sbjct: 438 KL--------------LTIYERFDKPL------MKVIFDMEKNGILLNIQKLQELSDKFQ 477 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNK 267 L+ E+ +L + ++L LF + GL+ + ++ T VL + + Sbjct: 478 QVIAVLEDEIYNLAG-ERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALE 536 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + N S+ + L++ ++ T A+ TGR S Q Sbjct: 537 EEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATATGRLSSSNPNLQ 596 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P S +R IA +G K++ AD + IE R Sbjct: 597 NIPIRSEEGN-------------------------LIRQAFIAPKGHKIISADYSQIELR 631 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA +A +AF G+D++ T + F V ++ + R K + Sbjct: 632 LLAHVANVAAFKEAFANGQDIHEITARQVFGV--QEIDEQLRRKAKSINF---------- 679 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A Sbjct: 680 ----GIIYGISPFGLAKR------------------------------LGITIAEAAEYI 705 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + + +A +G GR Sbjct: 706 NYYFSCYPEIKAYM---EKAVSIARLHGYVETL-----------------------FGRR 739 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-TKAGY-DIV 625 RD+ N Y+ R Q + DI+ + + I+ Sbjct: 740 CFVRDINNTIPYIRQF---AERAAINAPL------QGTAADIIKRATIQLFDQLKVGKII 790 Query: 626 LTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 L VHDE++ E + + A ++ +M + +PL+ E + Sbjct: 791 LQVHDELLVEVEDEKVQETAKLIKDIMENAIE--ISIPLEVEIKIGDNWG 838 >gi|29375463|ref|NP_814617.1| DNA polymerase I [Enterococcus faecalis V583] gi|227554989|ref|ZP_03985036.1| DNA polymerase I [Enterococcus faecalis HH22] gi|229548814|ref|ZP_04437539.1| DNA polymerase I [Enterococcus faecalis ATCC 29200] gi|255971330|ref|ZP_05421916.1| DNA polymerase A [Enterococcus faecalis T1] gi|255973949|ref|ZP_05424535.1| DNA polymerase A [Enterococcus faecalis T2] gi|256617748|ref|ZP_05474594.1| DNA polymerase A [Enterococcus faecalis ATCC 4200] gi|256957263|ref|ZP_05561434.1| DNA polymerase A [Enterococcus faecalis DS5] gi|256960003|ref|ZP_05564174.1| DNA polymerase A [Enterococcus faecalis Merz96] gi|257077763|ref|ZP_05572124.1| DNA polymerase A [Enterococcus faecalis JH1] gi|257089289|ref|ZP_05583650.1| DNA polymerase I [Enterococcus faecalis CH188] gi|257418473|ref|ZP_05595467.1| DNA polymerase A [Enterococcus faecalis T11] gi|257421124|ref|ZP_05598114.1| DNA polymerase I [Enterococcus faecalis X98] gi|293383756|ref|ZP_06629663.1| DNA polymerase I [Enterococcus faecalis R712] gi|293388768|ref|ZP_06633261.1| DNA polymerase I [Enterococcus faecalis S613] gi|294781289|ref|ZP_06746635.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1] gi|307267954|ref|ZP_07549342.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248] gi|307278426|ref|ZP_07559501.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860] gi|307286686|ref|ZP_07566772.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109] gi|312901580|ref|ZP_07760853.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470] gi|312904438|ref|ZP_07763597.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635] gi|312907028|ref|ZP_07766024.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512] gi|312952854|ref|ZP_07771716.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102] gi|312978714|ref|ZP_07790441.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516] gi|29342923|gb|AAO80687.1| DNA polymerase I [Enterococcus faecalis V583] gi|227175871|gb|EEI56843.1| DNA polymerase I [Enterococcus faecalis HH22] gi|229306043|gb|EEN72039.1| DNA polymerase I [Enterococcus faecalis ATCC 29200] gi|255962348|gb|EET94824.1| DNA polymerase A [Enterococcus faecalis T1] gi|255966821|gb|EET97443.1| DNA polymerase A [Enterococcus faecalis T2] gi|256597275|gb|EEU16451.1| DNA polymerase A [Enterococcus faecalis ATCC 4200] gi|256947759|gb|EEU64391.1| DNA polymerase A [Enterococcus faecalis DS5] gi|256950499|gb|EEU67131.1| DNA polymerase A [Enterococcus faecalis Merz96] gi|256985793|gb|EEU73095.1| DNA polymerase A [Enterococcus faecalis JH1] gi|256998101|gb|EEU84621.1| DNA polymerase I [Enterococcus faecalis CH188] gi|257160301|gb|EEU90261.1| DNA polymerase A [Enterococcus faecalis T11] gi|257162948|gb|EEU92908.1| DNA polymerase I [Enterococcus faecalis X98] gi|291078832|gb|EFE16196.1| DNA polymerase I [Enterococcus faecalis R712] gi|291081925|gb|EFE18888.1| DNA polymerase I [Enterococcus faecalis S613] gi|294451625|gb|EFG20081.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1] gi|295113921|emb|CBL32558.1| DNA polymerase I [Enterococcus sp. 7L76] gi|306502164|gb|EFM71448.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109] gi|306504932|gb|EFM74127.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860] gi|306515595|gb|EFM84122.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248] gi|310627013|gb|EFQ10296.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512] gi|310629370|gb|EFQ12653.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102] gi|310632136|gb|EFQ15419.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635] gi|311288421|gb|EFQ66977.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516] gi|311291375|gb|EFQ69931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470] gi|315032493|gb|EFT44425.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0017] gi|315034273|gb|EFT46205.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0027] gi|315145154|gb|EFT89170.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2141] gi|315148036|gb|EFT92052.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4244] gi|315149639|gb|EFT93655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0012] gi|315152951|gb|EFT96967.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0031] gi|315155181|gb|EFT99197.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0043] gi|315157509|gb|EFU01526.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0312] gi|315163062|gb|EFU07079.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645] gi|315167987|gb|EFU12004.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1341] gi|315574209|gb|EFU86400.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B] gi|315577339|gb|EFU89530.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630] gi|315581648|gb|EFU93839.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A] gi|329577869|gb|EGG59290.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1467] Length = 882 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 85/652 (13%), Positives = 186/652 (28%), Gaps = 122/652 (18%) Query: 33 FAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 + ++ + P + L + +++ L Sbjct: 338 VGLAWGNNKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVGK--MT 393 Query: 91 HRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 L+ A V + + + +E E ++ + Sbjct: 394 GIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 453 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 +A + K D +T + + + E L + + G VD + Sbjct: 454 ARKIKAIQFLT--SKLDSELTEK--NQADLFYKMELPLSRILGDMEITGIRVDATRLKEM 509 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 ++++++ + + ++L LF + GL + T+ +T VL Sbjct: 510 QVEFSERLKEIEEKIYAEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 568 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ P + R ++ + L++ + D ++ ++TGR S Sbjct: 569 QLKEQAPIVADILTYRQ-IAKIQSTYVEGLLKVIQPDNKIHTRYVQ-TLTQTGRLSSVDP 626 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV-VADLAG 383 QN+P + +R + E L+ +D + Sbjct: 627 NLQNIPIRLEEGRK-------------------------IREAFVPREDNWLIFSSDYSQ 661 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQ 442 IE RVLA ++ ++ +AF G+D++ +T R F V VT + R K + + Y Sbjct: 662 IELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYG 721 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + L + ++ E++ + + + + + + Sbjct: 722 IS-----DYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR- 775 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 R ++ + + T G A K + Sbjct: 776 -RRYLSDINSRNFNLRSF---AERTAINTPIQGSAADILKIAMIE--------------- 816 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 R L + QA Sbjct: 817 -MARRLKEEKL-----------------------------QAT----------------- 829 Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E P+++ ++ +M S +PL + K + Sbjct: 830 -MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878 >gi|297198968|ref|ZP_06916365.1| DNA polymerase I [Streptomyces sviceus ATCC 29083] gi|297147249|gb|EDY55141.2| DNA polymerase I [Streptomyces sviceus ATCC 29083] Length = 694 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 100/651 (15%), Positives = 183/651 (28%), Gaps = 144/651 (22%) Query: 44 LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +D + L + + V HN+ V + + T + A Sbjct: 162 WFDPSELDEADERAWVAWLADAERPKVLHNAKGAMRVFAEH-DWSVAGVSM-DTALAAYL 219 Query: 103 NGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 L A+ L + + EA L + Sbjct: 220 VKPGRRSFDLDALSLEY------------LGRELAPPAAADGQLAFGADDGAEAEALMVQ 267 Query: 160 -YCKGDVTVTR--EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 D+ + + E L + G D A + Q+ Sbjct: 268 ARAVLDLGSAFEGRLAEVGAADLLRDMELPTSALLARMERHGIAADRAHLEAMEQMFAGA 327 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNK-KLT 270 + +E + ++L+ LF E GL T+T L+ + Sbjct: 328 VQQAVKEAHGAAGH-EFNLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLATQTD 386 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 + + ++ V + L++ + +DGR+ T A+ TGR S QN+P Sbjct: 387 NELPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP 444 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVL 389 + +R + EG + L+ AD + IE RV+ Sbjct: 445 VRTDEGRA-------------------------IRRGFVVGEGFESLMTADYSQIELRVM 479 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++ + ++AF +GEDL+ T ++ F V P V + R K M L Sbjct: 480 AHLSEDAGLIEAFTSGEDLHTTAASQVFAVEPGAVDAEMRRKIKAMSYGL---------- 529 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 GL+ + + + + A Sbjct: 530 ----AYGLSAFGLSQQLNIEAG------------------------------EARALMDA 555 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + ++ V + L +A ++ G GR Sbjct: 556 YFERFGGVRDY---LRRAVDEARATGYTATL-----------------------FGRRRY 589 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAG--YD 623 D+ ++ R +Q + DI+ M+ AG Sbjct: 590 LPDLNSDN---RQRREAAERMALNAP------IQGTAADIVKIAMLKVDGALRDAGLASR 640 Query: 624 IVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDEIV E + A + M+ +PL + + Sbjct: 641 MLLQVHDEIVLEVAPGERGVAEEIVRREMSDAVD--LRVPLGVSVGDGSDW 689 >gi|257081123|ref|ZP_05575484.1| DNA polymerase A [Enterococcus faecalis E1Sol] gi|256989153|gb|EEU76455.1| DNA polymerase A [Enterococcus faecalis E1Sol] Length = 882 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 85/652 (13%), Positives = 185/652 (28%), Gaps = 122/652 (18%) Query: 33 FAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 + + + P + L + +++ L Sbjct: 338 VGLAWGNDKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVGK--MT 393 Query: 91 HRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 L+ A V + + + +E E ++ + Sbjct: 394 GIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 453 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 +A + K D +T + + + E L + + G VD + Sbjct: 454 ARKIKAIQFLT--SKLDSELTEK--NQADLFYKMELPLSRILGDMEITGIRVDATRLKEM 509 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 ++++++ + + ++L LF + GL + T+ +T VL Sbjct: 510 QVEFSERLKEIEEKIYAEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 568 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ P + R ++ + L++ + D ++ ++TGR S Sbjct: 569 QLKEQAPIVADILTYRQ-IAKIQSTYVEGLLKVIQPDNKIHTRYVQ-TLTQTGRLSSVDP 626 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV-VADLAG 383 QN+P + +R + E L+ +D + Sbjct: 627 NLQNIPIRLEEGRK-------------------------IREAFVPREDNWLIFSSDYSQ 661 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQ 442 IE RVLA ++ ++ +AF G+D++ +T R F V VT + R K + + Y Sbjct: 662 IELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYG 721 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + L + ++ E++ + + + + + + Sbjct: 722 IS-----DYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR- 775 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 R ++ + + T G A K + Sbjct: 776 -RRYLSDINSRNFNLRSF---AERTAINTPIQGSAADILKIAMIE--------------- 816 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 R L + QA Sbjct: 817 -MARRLKEEKL-----------------------------QAT----------------- 829 Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E P+++ ++ +M S +PL + K + Sbjct: 830 -MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878 >gi|256761634|ref|ZP_05502214.1| DNA polymerase A [Enterococcus faecalis T3] gi|256964301|ref|ZP_05568472.1| DNA polymerase A [Enterococcus faecalis HIP11704] gi|257086217|ref|ZP_05580578.1| DNA polymerase A [Enterococcus faecalis D6] gi|257415442|ref|ZP_05592436.1| DNA polymerase A [Enterococcus faecalis AR01/DG] gi|307271878|ref|ZP_07553146.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855] gi|256682885|gb|EEU22580.1| DNA polymerase A [Enterococcus faecalis T3] gi|256954797|gb|EEU71429.1| DNA polymerase A [Enterococcus faecalis HIP11704] gi|256994247|gb|EEU81549.1| DNA polymerase A [Enterococcus faecalis D6] gi|257157270|gb|EEU87230.1| DNA polymerase A [Enterococcus faecalis ARO1/DG] gi|306511384|gb|EFM80386.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855] gi|315027064|gb|EFT38996.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2137] gi|323480059|gb|ADX79498.1| DNA polymerase I [Enterococcus faecalis 62] gi|327534459|gb|AEA93293.1| DNA-directed DNA polymerase I [Enterococcus faecalis OG1RF] Length = 882 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 85/652 (13%), Positives = 185/652 (28%), Gaps = 122/652 (18%) Query: 33 FAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 + + + P + L + +++ L Sbjct: 338 VGLAWGNDKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVGK--MT 393 Query: 91 HRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 L+ A V + + + +E E ++ + Sbjct: 394 GIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 453 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 +A + K D +T + + + E L + + G VD + Sbjct: 454 ARKIKAIQFLT--SKLDSELTEK--NQADLFYKMELPLSRILGDMEITGIRVDATRLKEM 509 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 ++++++ + + ++L LF + GL + T+ +T VL Sbjct: 510 QVEFSERLKEIEEKIYAEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 568 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ P + R ++ + L++ + D ++ ++TGR S Sbjct: 569 QLKEQAPIVADILTYRQ-IAKIQSTYVEGLLKVIQPDNKIHTRYVQ-TLTQTGRLSSVDP 626 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV-VADLAG 383 QN+P + +R + E L+ +D + Sbjct: 627 NLQNIPIRLEEGRK-------------------------IREAFVPREDNWLIFSSDYSQ 661 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQ 442 IE RVLA ++ ++ +AF G+D++ +T R F V VT + R K + + Y Sbjct: 662 IELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYG 721 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + L + ++ E++ + + + + + + Sbjct: 722 IS-----DYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR- 775 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 R ++ + + T G A K + Sbjct: 776 -RRYLSDINSRNFNLRSF---AERTAINTPIQGSAADILKIAMIE--------------- 816 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 R L + QA Sbjct: 817 -MARRLKEEKL-----------------------------QAT----------------- 829 Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E P+++ ++ +M S +PL + K + Sbjct: 830 -MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878 >gi|284047822|ref|YP_003398161.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731] gi|283952043|gb|ADB46846.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731] Length = 872 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 92/648 (14%), Positives = 180/648 (27%), Gaps = 147/648 (22%) Query: 35 FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIH 91 F + + L++ ++ + + L ++ Sbjct: 359 LAFAGKHYVFCPETAGK---EAVLSLLQDPAISK----AAADPKELYKYMMGQGKNLQGI 411 Query: 92 RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 + ++ Q + E + L A +G Sbjct: 412 T-DDPALAGYLYEPGAS--------GYGIQALGE-EFLPAASGEGAQDTAALVPVLREKL 461 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 E L Y D+ + + G VD A+ + + Sbjct: 462 EERGLTRLY--EDIELPL----------------TENLAEMEFTGIAVDQAMLDEVTGEM 503 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK 268 + L+Q+ + ++L LF + GL + T+ +T VL + + Sbjct: 504 TKKVQALEQQAWDQAG-EQFNLNSPKQLGVLLFEKLGLPIIKKTKTGYSTDVSVLEALQG 562 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQ 327 P + + R S+ L L +N GR+ + A+ TGR S Q Sbjct: 563 EHPLIETLISYRQ-LSKLLSTYLLGLHPLINPATGRIHTHFNQM-ATVTGRLSSTEPNLQ 620 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEA 386 N+P + + +R + EG L+ D + +E Sbjct: 621 NIPTRTEVGKR-------------------------MREMFVPGEGYDLLMSCDYSQVEL 655 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RV+A +A ++ L +F G+D++ T + F V QVT R+ K + + Y Sbjct: 656 RVMASIAQDELLLDSFRHGQDVHARTASEIFGVPLDQVTPYMRSKAKTVNFGIIYGIS-- 713 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 L + S + + + ++ E + Sbjct: 714 ---DFGLARQLGVPRGEAAQYIESYFARYTGVKAYMEREKQKAREMGYVETLF------- 763 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 +RR +P + K Sbjct: 764 ----------------------------------GRRRYLPDINAKNFN----------- 778 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 + + + + T + + K+ N L E + ++L Sbjct: 779 RRSFAERTAINTPIQGTAADIIKVAM--LKVARN---------LKEA-----RVKSRVLL 822 Query: 627 TVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E P ++ + M A +PL A+ K + Sbjct: 823 QVHDELVLEIPAAEQETVGKIVKETMEHAVDLA--VPLVADVAVGKNW 868 >gi|261366357|ref|ZP_05979240.1| DNA polymerase I [Subdoligranulum variabile DSM 15176] gi|282571960|gb|EFB77495.1| DNA polymerase I [Subdoligranulum variabile DSM 15176] Length = 837 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 102/678 (15%), Positives = 193/678 (28%), Gaps = 165/678 (24%) Query: 12 SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH 71 SP+ L G A++ + D V L L L++ V Sbjct: 305 SPLPLVVEGRLYLAQNAD--GSWYAVQDGQVFL-------PGTDRLAALLDSDADLWV-- 353 Query: 72 NSYFERTVLKACFNLD---IPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEE 125 F+ L LD I + A ++ +K + + + Sbjct: 354 ---FDAKPL-YHLALDRGGIGKAIHFDGKLAAYLLNPSASGYAVKNLAGEYDVPA----- 404 Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185 A C+ + A G+ D E L Sbjct: 405 -----AFTCEAAPDAGVLAALLDKLAAALDESGQRKLHD---------------EMELPL 444 Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 + + G+ VD + E + Q + + ++L LF Sbjct: 445 ARVLADMERIGFAVDADGIRAFGDSLRGELDGILQSIYEEVGY-EFNVNSPKQLGEALFD 503 Query: 246 ETGLHLEDLT---ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 + GL T +T L S + +P Q+ R ++ + L+ A +DG Sbjct: 504 KLGLPPRKKTSRGYSTDAATLESLRPYSPVIDQILKYR-TYAKLLSTYVEGLLSAQAADG 562 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 R+ T A RTGR S QN+P + + Sbjct: 563 RVHSTFIQTEA-RTGRISSTEPNLQNIPIRTE-------------------------LGS 596 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R +A GK+LV AD + IE R+LA + G++ +AF G D++ +T A+ +++ + Sbjct: 597 RLRGFFVAGAGKELVDADYSQIELRILAHITGDEAMQQAFLHGADIHRSTAAKIYHIPES 656 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT R+ K + + Sbjct: 657 EVTPQLRSASKAINFGIM------------------------------------------ 674 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + + + + K + +V + ++ Sbjct: 675 --YGKGAFSLSKDLDVSVKEADAFLKTYLATFPKVDGYMQDCIAHAKE------------ 720 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 + GR ++ ++ R + Sbjct: 721 --------------KGYVETLFGRRRALPELASSNF---QVRASGERMA------RNTPI 757 Query: 603 QAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNP 655 Q + DI+ M++ K ++L VHDE++ E P+ + + M Sbjct: 758 QGTAADIIKLAMVHVWQRLRDEKLEARLLLQVHDELIVEAPEAEVEEVKRVLREEMEQVV 817 Query: 656 SWAKGLPLKAEGYESKRY 673 + +PL + K + Sbjct: 818 QY--SVPLTTDVGTGKTW 833 >gi|160944566|ref|ZP_02091794.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii M21/2] gi|158444348|gb|EDP21352.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii M21/2] Length = 857 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 101/655 (15%), Positives = 196/655 (29%), Gaps = 162/655 (24%) Query: 35 FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLKACFNLDIPIHR 92 + D V L L+N DVT+ NS + + + + I Sbjct: 345 YAVQDTTVY--PLED-----ADLVRLLDNADVTLDVFNSAPLYAKAMAAGGWGSSI---- 393 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 + A ++ K I+ + ++ + Sbjct: 394 VWDGKLAAYLLDASAS------------------KYQISELIPAYKAAAAFTCT--DYPD 433 Query: 153 AWRLFGEYCKGDVTVTR----EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 A RL + + +T ++ + E L + + G VD Sbjct: 434 AGRLADLFARMKAEITACGEDALY------NEIEFPLAQVLADMTRTGVLVDKDGIEQFG 487 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ETTCQRVLSS 265 + E ++ + T + ++L LF GL T +T L S Sbjct: 488 VKLREELEQVLTRIHMETGSATFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLES 547 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 ++ P V R + + L++ + DGR+ T A RTGR S Sbjct: 548 LRE-YPLVEDVLQYR-AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPN 604 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P + + +R+ +A G LV AD + IE Sbjct: 605 LQNIPIRTE-------------------------LGSQLRAYFVAKPGCVLVDADYSQIE 639 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA + G++ +AF GED++ +T A+ + + ++VT R+ K + Sbjct: 640 LRILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAIN--------- 690 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G + + + + Sbjct: 691 -----FGIMYG------------------------------KGAYSLSKDIGVTVKEADA 715 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 K + VS ++ + N + G Sbjct: 716 FLKNYLAAFPSVSGYMDKTIADAK--------------------------ANGYVSTLFG 749 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TK 619 R ++ + + + ++ R +Q + D++ M+ K Sbjct: 750 RRRTLPELASTNFNVRASGERMAR---------NTPIQGTAADVIKLAMVRVWKRLRDEK 800 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 ++LTVHDE++ E P+ + A+ + M +A +PL + + K + Sbjct: 801 MASRLILTVHDELIVEAPEAEAEQAARILREEMEGCVQYA--VPLSTDVHAGKNW 853 >gi|215404071|ref|ZP_03416252.1| DNA polymerase I [Mycobacterium tuberculosis 02_1987] gi|215411274|ref|ZP_03420082.1| DNA polymerase I [Mycobacterium tuberculosis 94_M4241A] gi|215445811|ref|ZP_03432563.1| DNA polymerase I [Mycobacterium tuberculosis T85] gi|289745934|ref|ZP_06505312.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987] gi|289757731|ref|ZP_06517109.1| DNA polymerase I polA [Mycobacterium tuberculosis T85] gi|294996578|ref|ZP_06802269.1| DNA polymerase I [Mycobacterium tuberculosis 210] gi|298525125|ref|ZP_07012534.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A] gi|289686462|gb|EFD53950.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987] gi|289713295|gb|EFD77307.1| DNA polymerase I polA [Mycobacterium tuberculosis T85] gi|298494919|gb|EFI30213.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A] gi|326903242|gb|EGE50175.1| DNA polymerase I polA [Mycobacterium tuberculosis W-148] Length = 904 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 90/598 (15%), Positives = 180/598 (30%), Gaps = 136/598 (22%) Query: 95 CTLVLARSNGLPS---ALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 T + A L + +L ++ ++ + + + + Sbjct: 419 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAETIQTTILRA 478 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + + T + E + + + G VD+ + L Sbjct: 479 RAVIDLADALDAELARIDSTALLG-------EMELPVQRVLAKMESAGIAVDLPMLTELQ 531 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSS 265 + + + + + ++L+ LF E G+ T+T T L S Sbjct: 532 SQFGDQIRDAAEAAYGVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQS 590 Query: 266 NKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 P + +R +R V ++ L++A+ +DGR+ T A+ TGR S Sbjct: 591 LFDKTGHPFLQHLLAHR-DVTRLKVT-VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTE 647 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLA 382 QN+P + + +R + +G +L+ AD + Sbjct: 648 PNLQNIPIRTDAGRR-------------------------IRDAFVVGDGYAELMTADYS 682 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++G++ ++AF TGEDL+ +R+F V +VT + R K M L Sbjct: 683 QIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL--- 739 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 GL+ + +K Sbjct: 740 -----------AYGLSAYGLSQQLKI------------------------------STEE 758 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 A+ + V + + E+ ++G Sbjct: 759 ANEQMDAYFARFGGVRDYLRAV---VERARKDGYTSTVL--------------------- 794 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 GR ++ ++ R +Q + DI+ M+ KA Sbjct: 795 --GRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAADIIKVAMIQVDKALN 843 Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + L M + +PL+ + + Sbjct: 844 EAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGA--YPLDVPLEVSVGYGRSW 899 >gi|268608093|ref|ZP_06141821.1| DNA polymerase I [Ruminococcus flavefaciens FD-1] Length = 845 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 90/578 (15%), Positives = 180/578 (31%), Gaps = 128/578 (22%) Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF--GEYCKGDV 165 LK I + C + + + L D Sbjct: 379 NLKDDAAICGYLLNTSASDYA-IEKLCAEYGVHYYSENGEFADLLSIELLIKKLRSVIDK 437 Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E+ +++E L + ++ D G C+D + + Q + Sbjct: 438 EGMTELLEKIE------LPLTEVLASMEDIGICIDKQGVEDFGTYLTEMIEETQQMVYDD 491 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L T LF E GL + T++ T VL + P V R Sbjct: 492 AGHS-FNIASPKQLGTVLFEEMGLPAKKKTKSGYSTNAEVLEELRNDAPIVDNVLKFRQY 550 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ + L++ + DGR+ + +RTGR S QN+P + Sbjct: 551 -TKLNSTYVVGLLDKIADDGRIHTWFRQ-TETRTGRISSTEPNMQNIPVRTE-------- 600 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 + +R +A +G+KLV AD + IE RV+A + G++ ++AF Sbjct: 601 -----------------LGAQMRKFFVAPKGRKLVDADYSQIELRVMAHLCGDKNMIEAF 643 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 +GED++ +T A+ F++ VT + R+ K + + Sbjct: 644 NSGEDIHTSTAAQVFDMPSIMVTPEMRSAAKAVNFGII---------------------- 681 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + ++ + K+ +V+E Sbjct: 682 ----------------------YGIGAFSLAKDIGTSVAKAKKYINDYLAKYEKVNEFM- 718 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + ++G GR ++ ++ + Sbjct: 719 --ETTVDNAFKDGYVTTM-----------------------FGRKRRIPELSSSNKMMQA 753 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 +++ VQ + D++ M+N ++L VHDE++ E Sbjct: 754 AGKRI---------AMNTPVQGTAADLIKIAMINVYNRLKAEDIDAKLILQVHDELILEA 804 Query: 637 PDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++D A +L M + +PL + + + Sbjct: 805 SESDAEHAAQLLKEEMQNVYE--MKVPLSVDVHTGDSW 840 >gi|295693393|ref|YP_003602003.1| DNA polymerase i [Lactobacillus crispatus ST1] gi|295031499|emb|CBL50978.1| DNA polymerase I [Lactobacillus crispatus ST1] Length = 887 Score = 265 bits (678), Expect = 2e-68, Method: Composition-based stats. Identities = 95/658 (14%), Positives = 201/658 (30%), Gaps = 132/658 (20%) Query: 31 ILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACFN 85 + FA +D D + Q L+ LE+ + N F+ V Sbjct: 343 VGFALKINDQ----IYVSRDVELLQETNLRHLLEDEQIKK---NV-FDLKRTMVGLHRLG 394 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 + + + L+ + + +GE L K I + KG++ D Sbjct: 395 IHVHGQDY-DMLLASYLINNENNSNDLGEIAHL--YGDYSVKTDIEIYGKGKSEHVPDDD 451 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW--YLDQTINDRGYCVDVAL 203 + + A ++ + ++ + + E+ + + G V+ + Sbjct: 452 EELFNHLASKVNAIENLKQPLLE-KLKEHEQDDLFDTIEIPTARVLARMEINGMKVEAST 510 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260 L V +L+ ++ + ++L LF + L + T+ +T Sbjct: 511 LLELQNEFAVRLKELEDKIYQQAG-ERFNLNSPKQLGHILFEKLNLPVIKKTKTGYSTSV 569 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL K +P ++ + R ++ + L++ + DGR+ + TGR S Sbjct: 570 EVLDQLKTQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHTRYLQ-TLTATGRLS 627 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVA 379 QN+P + + +R + + Sbjct: 628 SVDPNLQNIPTRTEEGK-------------------------QIRKAFVPTEPDGYIFSC 662 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELA 438 D + +E RVLA ++G+Q +AF+TG D++ T R F++ P +VT R K + Sbjct: 663 DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKAVNFG 722 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + L ++ ++ E++ + + E + Sbjct: 723 IVYGIS-----DYGLSKNLGISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETI 777 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +RR +P ++ KK Sbjct: 778 -----------------------------------------MHRRRYLPDIHAKKFTVRS 796 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ +N+ + K+ +Q Sbjct: 797 F---------------AERTAINSPIQG---SAADIIKIAMINMQ-----------KKLD 827 Query: 619 KAGYD--IVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + +V+ VHDE++ + P + + +M S +PL A+ + Sbjct: 828 ELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADSGWGHNW 883 >gi|15608767|ref|NP_216145.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv] gi|15841084|ref|NP_336121.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551] gi|31792815|ref|NP_855308.1| DNA polymerase I [Mycobacterium bovis AF2122/97] gi|121637536|ref|YP_977759.1| DNA polymerase I [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661424|ref|YP_001282947.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|148822836|ref|YP_001287590.1| DNA polymerase I [Mycobacterium tuberculosis F11] gi|167968418|ref|ZP_02550695.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|218753335|ref|ZP_03532131.1| DNA polymerase I [Mycobacterium tuberculosis GM 1503] gi|224990011|ref|YP_002644698.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172] gi|253799333|ref|YP_003032334.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435] gi|254231830|ref|ZP_04925157.1| DNA polymerase I polA [Mycobacterium tuberculosis C] gi|254364479|ref|ZP_04980525.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem] gi|260186577|ref|ZP_05764051.1| DNA polymerase I [Mycobacterium tuberculosis CPHL_A] gi|260204898|ref|ZP_05772389.1| DNA polymerase I [Mycobacterium tuberculosis K85] gi|289447237|ref|ZP_06436981.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A] gi|289574296|ref|ZP_06454523.1| DNA polymerase I polA [Mycobacterium tuberculosis K85] gi|289761777|ref|ZP_06521155.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503] gi|297634182|ref|ZP_06951962.1| DNA polymerase I [Mycobacterium tuberculosis KZN 4207] gi|297731169|ref|ZP_06960287.1| DNA polymerase I [Mycobacterium tuberculosis KZN R506] gi|306775815|ref|ZP_07414152.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001] gi|306779627|ref|ZP_07417964.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002] gi|306784359|ref|ZP_07422681.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003] gi|306788727|ref|ZP_07427049.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004] gi|306793064|ref|ZP_07431366.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005] gi|306797446|ref|ZP_07435748.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006] gi|306803324|ref|ZP_07439992.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008] gi|306807906|ref|ZP_07444574.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007] gi|306967723|ref|ZP_07480384.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009] gi|306971921|ref|ZP_07484582.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010] gi|307084209|ref|ZP_07493322.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012] gi|313658501|ref|ZP_07815381.1| DNA polymerase I [Mycobacterium tuberculosis KZN V2475] gi|61223052|sp|P0A550|DPO1_MYCTU RecName: Full=DNA polymerase I; Short=POL I gi|61223053|sp|P0A551|DPO1_MYCBO RecName: Full=DNA polymerase I; Short=POL I gi|416117|gb|AAB46393.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv] gi|2113913|emb|CAB08882.1| PROBABLE DNA POLYMERASE I POLA [Mycobacterium tuberculosis H37Rv] gi|13881298|gb|AAK45935.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551] gi|31618405|emb|CAD96323.1| DNA polymerase I polA [Mycobacterium bovis AF2122/97] gi|121493183|emb|CAL71654.1| DNA polymerase I polA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600889|gb|EAY59899.1| DNA polymerase I polA [Mycobacterium tuberculosis C] gi|134149993|gb|EBA42038.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem] gi|148505576|gb|ABQ73385.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|148721363|gb|ABR05988.1| DNA polymerase I polA [Mycobacterium tuberculosis F11] gi|224773124|dbj|BAH25930.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172] gi|253320836|gb|ACT25439.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435] gi|289420195|gb|EFD17396.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A] gi|289538727|gb|EFD43305.1| DNA polymerase I polA [Mycobacterium tuberculosis K85] gi|289709283|gb|EFD73299.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503] gi|308215730|gb|EFO75129.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001] gi|308327428|gb|EFP16279.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002] gi|308330907|gb|EFP19758.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003] gi|308334742|gb|EFP23593.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004] gi|308338519|gb|EFP27370.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005] gi|308342190|gb|EFP31041.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006] gi|308345716|gb|EFP34567.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007] gi|308350015|gb|EFP38866.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008] gi|308354652|gb|EFP43503.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009] gi|308358608|gb|EFP47459.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010] gi|308366154|gb|EFP55005.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012] gi|323719889|gb|EGB29002.1| DNA polymerase I polA [Mycobacterium tuberculosis CDC1551A] gi|328459083|gb|AEB04506.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 4207] gi|740010|prf||2004291B DNA polymerase I Length = 904 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 90/598 (15%), Positives = 180/598 (30%), Gaps = 136/598 (22%) Query: 95 CTLVLARSNGLPS---ALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 T + A L + +L ++ ++ + + + + Sbjct: 419 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAETIQTTILRA 478 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + + T + E + + + G VD+ + L Sbjct: 479 RAVIDLADALDAELARIDSTALLG-------EMELPVQRVLAKMESAGIAVDLPMLTELQ 531 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSS 265 + + + + + ++L+ LF E G+ T+T T L S Sbjct: 532 SQFGDQIRDAAEAAYGVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQS 590 Query: 266 NKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 P + +R +R V ++ L++A+ +DGR+ T A+ TGR S Sbjct: 591 LFDKTGHPFLQHLLAHR-DVTRLKVT-VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTE 647 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLA 382 QN+P + + +R + +G +L+ AD + Sbjct: 648 PNLQNIPIRTDAGRR-------------------------IRDAFVVGDGYAELMTADYS 682 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++G++ ++AF TGEDL+ +R+F V +VT + R K M L Sbjct: 683 QIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL--- 739 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 GL+ + +K Sbjct: 740 -----------AYGLSAYGLSQQLKI------------------------------STEE 758 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 A+ + V + + E+ ++G Sbjct: 759 ANEQMDAYFARFGGVRDYLRAV---VERARKDGYTSTVL--------------------- 794 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 GR ++ ++ R +Q + DI+ M+ KA Sbjct: 795 --GRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAADIIKVAMIQVDKALN 843 Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + L M + +PL+ + + Sbjct: 844 EAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGA--YPLDVPLEVSVGYGRSW 899 >gi|240168007|ref|ZP_04746666.1| DNA polymerase I [Mycobacterium kansasii ATCC 12478] Length = 900 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 94/603 (15%), Positives = 179/603 (29%), Gaps = 145/603 (24%) Query: 95 CTLVLARSNGLPS---ALKAVGEALKL--------SSQKMEEGKELIARFCKGETHECLY 143 T + A L + Q++ ++ + L Sbjct: 414 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPEQQQLSLLDDMEGVDDQAVQTAILR 473 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 R + EA E + D T E + + + G VD+ L Sbjct: 474 ARAVADLAEALD--AELARIDSTALLA---------DMELPVQRVLADMERAGIAVDLRL 522 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQ 260 L + + ++ + + ++L+ LF E G+ T+T T Sbjct: 523 LAELQSQFADQIRDAAEAAYAVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDA 581 Query: 261 RVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 + + P + +R +R V ++ L+ ++ +DGR+ T A+ TGR Sbjct: 582 DAVQGLFEKTGHPFLQHLLAHR-DVTRLKVT-VDGLLNSVAADGRIHTTFNQTIAA-TGR 638 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLV 377 S QN+P + + +R + G +L+ Sbjct: 639 LSSTEPNLQNIPIRTDAGR-------------------------QIRDAFVVGAGYSELM 673 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G++ ++AF TGEDL+ +R+F V +VT + R K M Sbjct: 674 TADYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSY 733 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 L GL+ + + Sbjct: 734 GL--------------AYGLS------------------------------AYGLSTQLK 749 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + + V + L EQ ++G Sbjct: 750 ISTEEAKVQMDQYFARFGGVRDY---LMAVVEQARKDGYTSTVL---------------- 790 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 GR ++ ++ R +Q + DI+ M+ Sbjct: 791 -------GRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAADIIKVAMIEV 834 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYES 670 KA ++L VHDE++ E + L M + +PL+ Sbjct: 835 DKALTEAGLASRMLLQVHDELLFEIAPGERERVEALVREKMGGA--YPLDVPLEVSVGFG 892 Query: 671 KRY 673 + + Sbjct: 893 RSW 895 >gi|289554597|ref|ZP_06443807.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605] gi|289439229|gb|EFD21722.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605] Length = 903 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 90/598 (15%), Positives = 180/598 (30%), Gaps = 136/598 (22%) Query: 95 CTLVLARSNGLPS---ALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 T + A L + +L ++ ++ + + + + Sbjct: 418 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAETIQTTILRA 477 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + + T + E + + + G VD+ + L Sbjct: 478 RAVIDLADALDAELARIDSTALLG-------EMELPVQRVLAKMESAGIAVDLPMLTELQ 530 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSS 265 + + + + + ++L+ LF E G+ T+T T L S Sbjct: 531 SQFGDQIRDAAEAAYGVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQS 589 Query: 266 NKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 P + +R +R V ++ L++A+ +DGR+ T A+ TGR S Sbjct: 590 LFDKTGHPFLQHLLAHR-DVTRLKVT-VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTE 646 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLA 382 QN+P + + +R + +G +L+ AD + Sbjct: 647 PNLQNIPIRTDAGRR-------------------------IRDAFVVGDGYAELMTADYS 681 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++G++ ++AF TGEDL+ +R+F V +VT + R K M L Sbjct: 682 QIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL--- 738 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 GL+ + +K Sbjct: 739 -----------AYGLSAYGLSQQLKI------------------------------STEE 757 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 A+ + V + + E+ ++G Sbjct: 758 ANEQMDAYFARFGGVRDYLRAV---VERARKDGYTSTVL--------------------- 793 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 GR ++ ++ R +Q + DI+ M+ KA Sbjct: 794 --GRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAADIIKVAMIQVDKALN 842 Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + L M + +PL+ + + Sbjct: 843 EAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGA--YPLDVPLEVSVGYGRSW 898 >gi|15806710|ref|NP_295430.1| DNA-directed DNA polymerase [Deinococcus radiodurans R1] gi|7404361|sp|P52027|DPO1_DEIRA RecName: Full=DNA polymerase I; Short=POL I gi|6459477|gb|AAF11264.1|AE002012_4 DNA-directed DNA polymerase [Deinococcus radiodurans R1] Length = 956 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 84/528 (15%), Positives = 147/528 (27%), Gaps = 127/528 (24%) Query: 165 VTVTREIFKRLEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVER 215 +T + + L PL + Y + + RG VD TL+ V Sbjct: 533 AAITGHLLRELPPLLDDARRKMYDEMEKPLSGVLGRMEVRGVQVDSDFLQTLSIQAGVRL 592 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLT 270 L+ ++ G R ++L+T L+ + L T+ +T L + Sbjct: 593 ADLESQIHE-YAGEEFHIRSPKQLETVLYDKLELASSKKTKLTGQRSTAVSALEPLRDAH 651 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 P V R + L+ + +N T A TGR S QN+P Sbjct: 652 PIIPLVLEFR-ELDKLRGTYLDPIPNLVNPHTGRLHTTFAQTAVATGRLSSLNPNLQNIP 710 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 S E +R IA +G L+ AD + IE R+LA Sbjct: 711 IRSELGRE-------------------------IRKGFIAEDGFTLIAADYSQIELRLLA 745 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 +A + +AF G D++ T A+ + A V +QR K + Sbjct: 746 HIADDPLMQQAFVEGADIHRRTAAQVLGLDEATVDANQRRAAKTVN-------------- 791 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 G++ + + + + Sbjct: 792 FGVLYGMS------------------------------AHRLSNDLGIPYAEAATFIEIY 821 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + N + + + GR Sbjct: 822 FATYPGIRRYIN------------------------HTLDFGRTHG--YVETLYGRRRYV 855 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVL 626 + + R +Q + DI+ M+ G ++L Sbjct: 856 PGLSSRN---RVQREAEERLAYNMP------IQGTAADIMKLAMVQLDPQLDAIGARMLL 906 Query: 627 TVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE++ E P + L +M + +PL E + Sbjct: 907 QVHDELLIEAPLDKAEQVAALTKKVMENVVQ--LKVPLAVEVGTGPNW 952 >gi|315171781|gb|EFU15798.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1342] Length = 882 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 85/652 (13%), Positives = 186/652 (28%), Gaps = 122/652 (18%) Query: 33 FAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 + ++ + P + L + +++ L Sbjct: 338 VGLAWGNNKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVGK--MT 393 Query: 91 HRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 L+ A V + + + +E E ++ + Sbjct: 394 GIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 453 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 +A + K D +T + + + E L + + G VD + Sbjct: 454 ARKIKAIQFLT--SKLDSELTEK--NQADLFYKMELPLSRILGDMEITGIRVDATRLKEM 509 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 ++++++ + + ++L LF + GL + T+ +T VL Sbjct: 510 QVEFSERLKEIEEKIYAEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 568 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ P + R ++ + L++ + D ++ ++TGR S Sbjct: 569 QLKEQAPIVADILTYRQ-IAKIQSTYVEGLLKVIQPDNKIHTRYVQ-TLTQTGRLSSVDP 626 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV-VADLAG 383 QN+P + +R + E L+ +D + Sbjct: 627 NLQNIPIRLEEGRK-------------------------IREAFVPREDNWLIFSSDYSQ 661 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQ 442 IE RVLA ++ ++ +AF G+D++ +T R F V VT + R K + + Y Sbjct: 662 IELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYG 721 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + L + ++ E++ + + + + + + Sbjct: 722 IS-----DYGLSPKLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR- 775 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 R ++ + + T G A K + Sbjct: 776 -RRYLSDINSRNFNLRSF---AERTAINTPIQGSAADILKIAMIE--------------- 816 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 R L + QA Sbjct: 817 -MARRLKEEKL-----------------------------QAT----------------- 829 Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E P+++ ++ +M S +PL + K + Sbjct: 830 -MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878 >gi|315165261|gb|EFU09278.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1302] Length = 882 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 85/652 (13%), Positives = 186/652 (28%), Gaps = 122/652 (18%) Query: 33 FAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 + ++ + P + L + +++ L Sbjct: 338 VGLAWGNNKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVGK--MT 393 Query: 91 HRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 L+ A V + + + +E E ++ + Sbjct: 394 GIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 453 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 +A + K D +T + + + E L + + G VD + Sbjct: 454 ARKIKAIQFLT--SKLDSELTEK--NQADLFYKMELPLSRILGDMEITGIRVDATRLKEM 509 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 ++++++ + + ++L LF + GL + T+ +T VL Sbjct: 510 QVEFSERLKEIEEKIYAEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 568 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ P + R ++ + L++ + D ++ ++TGR S Sbjct: 569 QLKEQAPIVADILTYRQ-IAKIQSTYVEGLLKVIQPDNKIHTRYVQ-TLTQTGRLSSVDP 626 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV-VADLAG 383 QN+P + +R + E L+ +D + Sbjct: 627 NLQNIPIRLEEGRK-------------------------IREAFVPREDNWLIFSSDYSQ 661 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQ 442 IE RVLA ++ ++ +AF G+D++ +T R F V VT + R K + + Y Sbjct: 662 IELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTSNMRRQAKAVNFGIVYG 721 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + L + ++ E++ + + + + + + Sbjct: 722 IS-----DYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR- 775 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 R ++ + + T G A K + Sbjct: 776 -RRYLSDINSRNFNLRSF---AERTAINTPIQGSAADILKIAMIE--------------- 816 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 R L + QA Sbjct: 817 -MARRLKEEKL-----------------------------QAT----------------- 829 Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E P+++ ++ +M S +PL + K + Sbjct: 830 -MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878 >gi|256854276|ref|ZP_05559640.1| DNA polymerase I [Enterococcus faecalis T8] gi|307275295|ref|ZP_07556438.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134] gi|307290893|ref|ZP_07570783.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411] gi|256709836|gb|EEU24880.1| DNA polymerase I [Enterococcus faecalis T8] gi|306497963|gb|EFM67490.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411] gi|306507929|gb|EFM77056.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134] gi|315029747|gb|EFT41679.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4000] Length = 882 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 85/628 (13%), Positives = 182/628 (28%), Gaps = 118/628 (18%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA--- 111 Q + L + +++ L L+ A Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGK--MTGIAFDVLLAAYLLDTNDNNADIEG 417 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 V + + + +E E ++ + +A + K D +T + Sbjct: 418 VAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHLARKIKAIQFLT--SKLDSELTEK- 474 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + + E L + + G VD + ++++++ + Sbjct: 475 -NQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAG-EEF 532 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L LF + GL + T+ +T VL K+ P + R ++ Sbjct: 533 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQ-IAKIQS 591 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + L++ + D ++ ++TGR S QN+P + Sbjct: 592 TYVEGLLKVIQPDNKIHTRYVQ-TLTQTGRLSSVDPNLQNIPIRLEEGRK---------- 640 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R + E L+ +D + IE RVLA ++ ++ +AF G+D Sbjct: 641 ---------------IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQD 685 Query: 408 LYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 ++ +T R F V VT + R K + + Y + L + Sbjct: 686 IHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGIS-----DYGLSQNLGITRKQAQQ 740 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 ++ E++ + + + + + + R ++ + + Sbjct: 741 YIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR--RRYLSDINSRNFNLRSF---AER 795 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 T G A K + R L + Sbjct: 796 TAINTPIQGSAADILKIAMIE----------------MARRLKEEKL------------- 826 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-S 645 QA ++L VHDE+V E P+++ Sbjct: 827 ----------------QAT------------------MLLQVHDELVFEVPESELEQLNQ 852 Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ +M S +PL + K + Sbjct: 853 LVKEVMEHAVS--LHVPLITDSSWGKTW 878 >gi|257083792|ref|ZP_05578153.1| DNA polymerase A [Enterococcus faecalis Fly1] gi|300859704|ref|ZP_07105792.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11] gi|256991822|gb|EEU79124.1| DNA polymerase A [Enterococcus faecalis Fly1] gi|300850522|gb|EFK78271.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11] Length = 848 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 85/652 (13%), Positives = 186/652 (28%), Gaps = 122/652 (18%) Query: 33 FAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 + ++ + P + L + +++ L Sbjct: 304 VGLAWGNNKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVGK--MT 359 Query: 91 HRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 L+ A V + + + +E E ++ + Sbjct: 360 GIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 419 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 +A + K D +T + + + E L + + G VD + Sbjct: 420 ARKIKAIQFLT--SKLDSELTEK--NQADLFYKMELPLSRILGDMEITGIRVDATRLKEM 475 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 ++++++ + + ++L LF + GL + T+ +T VL Sbjct: 476 QVEFSERLKEIEEKIYAEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 534 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ P + R ++ + L++ + D ++ ++TGR S Sbjct: 535 QLKEQAPIVADILTYRQ-IAKIQSTYVEGLLKVIQPDNKIHTRYVQ-TLTQTGRLSSVDP 592 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV-VADLAG 383 QN+P + +R + E L+ +D + Sbjct: 593 NLQNIPIRLEEGRK-------------------------IREAFVPREDNWLIFSSDYSQ 627 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQ 442 IE RVLA ++ ++ +AF G+D++ +T R F V VT + R K + + Y Sbjct: 628 IELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYG 687 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + L + ++ E++ + + + + + + Sbjct: 688 IS-----DYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR- 741 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 R ++ + + T G A K + Sbjct: 742 -RRYLSDINSRNFNLRSF---AERTAINTPIQGSAADILKIAMIE--------------- 782 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 R L + QA Sbjct: 783 -MARRLKEEKL-----------------------------QAT----------------- 795 Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E P+++ ++ +M S +PL + K + Sbjct: 796 -MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 844 >gi|326779972|ref|ZP_08239237.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1] gi|326660305|gb|EGE45151.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1] Length = 903 Score = 265 bits (676), Expect = 3e-68, Method: Composition-based stats. Identities = 100/649 (15%), Positives = 177/649 (27%), Gaps = 140/649 (21%) Query: 44 LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 D + + + V HN+ V + T + A Sbjct: 371 WLDPTQLEEADERAFAAWVSDPARPKVLHNAKNVMRVFPEH-GWRLEGVTM-DTALAAYL 428 Query: 103 NGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 AL A+ G+EL D + Sbjct: 429 VKPGRRSFALDALAVEY--------LGRELAPAAASDGQLAFGADDRAEQDALMAQARAV 480 Query: 160 YCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 GD T + + E L + G D A + Q + Sbjct: 481 LDLGDAFTT-RLKEVGAAELLHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQQ 539 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK-----LTPQ 272 +E + + ++L+ LF E GL T+T + Sbjct: 540 AVKEAHAAVG-REFNLGSPKQLQEILFGELGLPKTKKTKTGYTTDADALAWLAAQTEHEL 598 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + + +R + ++ V + L++ + +DGR+ T A+ TGR S QN+P Sbjct: 599 PVLMLRHREQ-AKLRVT-VEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVR 655 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAW 391 + +R + EG L+ AD + IE RV+A Sbjct: 656 TDEGRA-------------------------IRRGFVVGEGFETLMTADYSQIELRVMAH 690 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ + ++AF +GEDL+ T ++ F V V + R K M L Y Sbjct: 691 LSEDAGLIEAFTSGEDLHTTVASQVFGVGKDAVDAEMRRKIKAMSYGLAY---------- 740 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 GL+ + + + A + + Sbjct: 741 ----GLSAFGLSQQLNIDPA------------------------------EARVLMDTYF 766 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ V + + + + T GR Sbjct: 767 ERFGGVRDYLHRVVEEARAT--------------------------GYTETILGRRRYLP 800 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIV 625 D+ ++ R +Q + DI+ M+ KA ++ Sbjct: 801 DLNSDN---RQRREAAERMALNAP------IQGTAADIVKVAMLRVDKALTEAKLTSRML 851 Query: 626 LTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 L VHDEIV E + + M + PL K + Sbjct: 852 LQVHDEIVLEIAKGERKQVEEILRHEMANAVE--LRAPLDVSVGVGKDW 898 >gi|240142593|ref|YP_002967106.1| DNA polymerase I [Methylobacterium extorquens AM1] gi|240012540|gb|ACS43765.1| DNA polymerase I [Methylobacterium extorquens AM1] Length = 957 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 86/696 (12%), Positives = 168/696 (24%), Gaps = 161/696 (23%) Query: 20 GICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKE--------------ALE 62 G+ + D I + H + L +E Sbjct: 377 GLHLHRGDAGAIGLGIAVEPGRAVYVPIEHRAGGDGLFGGLAPGQIDAAAAWGAVGALME 436 Query: 63 NTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118 + V + H + L I +++ + L + Sbjct: 437 DAGVRKIVH----DLKGTAKAAGRLGFEIAGADDVGLMSYALESGLTGHGLPELAARH-- 490 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 L + A R ++ L P Sbjct: 491 ----------LGNAAPDPDALRGQGRGRVDAEAVAPRAAAPVAAQIADAVLRLWTVLAPR 540 Query: 179 SSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E + + + G +D A+ L++ +L+ E+ L G Sbjct: 541 LEGTPTQAVYEELELPMVPVLARMEAAGVRIDRAVLTELSRDFGATLARLETEIHELGGG 600 Query: 229 LVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 +++ LF GL T +L + R S Sbjct: 601 P-FQIGSPKQIGDVLFGRLGLPGGRRTPSGQWATGATILEELAAAGHALPGRLLDWRRTS 659 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + + L+ A + T L A+ TGR S N+P + Sbjct: 660 KLKSTYADALLSAADRGTDRVHTTFSLAATTTGRLSSSDPGLHNIPIRTEEGRR------ 713 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +R+ +A+EG +++ AD + +E R+LA +A +AF Sbjct: 714 -------------------IRAAFVAAEGHRILSADYSQVELRLLAHIADVPRMREAFAE 754 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 G D++ T + F V V + R K + + Y A L + Sbjct: 755 GVDIHAATASDMFGVPVGAVPGELRRRAKTINFGIVYGISA-----FGLADRLGIGRQEA 809 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV----SEL 520 E + ++ + EH G C + + Sbjct: 810 AEFIARYFERFPGIRDYVEGTKTFCREHGFVRTLFGRVCH---------YPGITSGNVSE 860 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + G A +R + + D Sbjct: 861 RMGVERQAVNAPIQGTAADIIRRAMIRMEGALADSGL----------------------- 897 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 +R ++ +V E + + Sbjct: 898 ------------------------SAR-----MLLQVHDE-----------LVFEVAEAE 917 Query: 641 -EFNASMLYHLM--TSNPSWAKGLPLKAEGYESKRY 673 A ++ +M + P +PL E ++ + Sbjct: 918 CADTARVVSDVMAGAAAPDIDLAVPLVVEARSAENW 953 >gi|328907014|gb|EGG26780.1| DNA polymerase I [Propionibacterium sp. P08] Length = 920 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 98/662 (14%), Positives = 183/662 (27%), Gaps = 133/662 (20%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFN 85 V A G D +D + L + + H++ L Sbjct: 372 SGDVEAVALGCVDGHAVWFDAAELDPEDEKSFAAWLADNECPKAMHSAKGPVEALA-GRG 430 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 ++ T + + + K + + L Sbjct: 431 WEVAGLTC-DTELASYLLHPDR------RSHKFDDAVRTHLNLTLGEGEENSDQAMLDFG 483 Query: 146 NKPNHREAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 N + R DV E E L E + ++ G VD + Sbjct: 484 NDSSAESMERAVAVTKLADVMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDIL 543 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261 L D T+ + + ++L+ LF + + T++ T Sbjct: 544 EGLRSEFDERVTRAQGAAWEAAGEKI-NLSSPKQLQGVLFEKLDMPKTRRTKSGYTTDAD 602 Query: 262 VLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 L+ + P + +R ++ L++ + DGR+ T A+ TGR Sbjct: 603 ALAGLYEKTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTIAA-TGRL 659 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVV 378 S QN+P + +R + EG + L+ Sbjct: 660 SSKDPNLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLS 694 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++G+Q + AF +G+D + T + F VAP V+ QR+ K M Sbjct: 695 ADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG 754 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 GL+ + + Sbjct: 755 --------------LAYGLS------------------------------AYGLSNQLKV 770 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + + + + +V E L + +Q G Sbjct: 771 SVGEAKELMAGYFSRFGKVHEY---LEEVVDQARRQGYTETLL----------------- 810 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM--- 615 GR D+ + R +Q + D++ M+ Sbjct: 811 ------GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMVATD 855 Query: 616 -NATKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 +AG ++L VHDE++ E +E + M +PL + Sbjct: 856 QKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHAME--LSVPLTVSIGVGR 913 Query: 672 RY 673 + Sbjct: 914 SW 915 >gi|210623711|ref|ZP_03293995.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275] gi|210153399|gb|EEA84405.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275] Length = 891 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 103/664 (15%), Positives = 184/664 (27%), Gaps = 142/664 (21%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 +I D V K LE+ D+ +N + L +I Sbjct: 346 IICMYITLDGDKVFCVS----EERIMDFKAVLESKDIKKYGYNMKEDYVAL---MPYEIA 398 Query: 90 IHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 + + S S K L+ E + K Sbjct: 399 LKGMSFDIAIAEYLIDSTST--------NTSECGAIAMKYLMKSVKSKEELLGKGVKAKK 450 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYC 198 Y + +++ E L + + G Sbjct: 451 FEDLTKEELSGYISSILNTVVNAMPKMKEEIESTKIEKLFDDVEMPLVEVLGNMEYTGIK 510 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256 VD + L + + L++E+ G + ++L LF + L + T+ Sbjct: 511 VDKEMLDELGKEFTKIISSLEEEIYG-YAGEEFNINSPKQLGVILFEKLELPVIKKTKTG 569 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGAS 314 +T VL K P ++ R + + L +N DGR+ T + Sbjct: 570 YSTNAEVLEKLKDKHPIIDKIGEYRQIV-KLNSTYVEGLTALINPIDGRIHSTFNQ-TIT 627 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374 TGR S QN+P L R+ ++ + K Sbjct: 628 TTGRISSTEPNLQNIPVRMEIGRRL-------------------------RAVFVSDDEK 662 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 +LV AD + +E RVLA M+G+Q + AF+ GED++ T ++ FNV +VT + R+ K Sbjct: 663 RLVDADYSQVELRVLAHMSGDQNMIDAFKHGEDIHRKTASQVFNVPVEEVTSELRSAAKA 722 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + Y + LN+ S ++E + F + E + Sbjct: 723 VNFGIIYGKT-----DFGLSEDLNIPVPQAKQYIESYFAKYEKIKEFMDNIIETAEKDGY 777 Query: 495 EDLFIGTACERVKKAWRQKHSRV--SELWNEL--HQAFEQTIENGKAIIARKRRDVPLVY 550 R+ + +A G A K V + Sbjct: 778 SQTMFNR---------RRYIPEIKSKNFMERNRGKRAAMNAPIQGSAADIIKIAMVNVF- 827 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 R L ++ + Sbjct: 828 ---------------RRLEKEELRSK---------------------------------- 838 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 ++L VHDE++ ETP + + M + + L + Sbjct: 839 -------------LILQVHDELIVETPIDELEKVEKIVREEMENAVD--MKVALTVDLNT 883 Query: 670 SKRY 673 + Sbjct: 884 GVSW 887 >gi|312984114|ref|ZP_07791461.1| DNA polymerase I [Lactobacillus crispatus CTV-05] gi|310894468|gb|EFQ43543.1| DNA polymerase I [Lactobacillus crispatus CTV-05] Length = 887 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 95/659 (14%), Positives = 201/659 (30%), Gaps = 134/659 (20%) Query: 31 ILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACFN 85 + FA + D + Q L+ LE+ + N F+ V Sbjct: 343 VGFALKIN----YQIYVSRDVELLQETNLRHLLEDEQIKK---NV-FDLKRTMVGLHRLG 394 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 + + + L+ + + +GE L K I + KG++ D Sbjct: 395 IHVHGQDY-DMLLASYLINNENNSNDLGEIAHL--YGDYSVKTDIEIYGKGKSEHVPDDD 451 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW--YLDQTINDRGYCVDVAL 203 + + A ++ + ++ + + E+ + + G V+ + Sbjct: 452 EELFNHLASKVNAIENLKQPLLE-KLKEHEQDDLFDTIEIPTARVLARMEINGMKVEAST 510 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260 L V +L+ ++ + ++L LF + L + T+ +T Sbjct: 511 LLELQNEFAVRLKELEDKIYQQAG-ERFNLNSPKQLGHILFEKLNLPVIKKTKTGYSTSV 569 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL K +P ++ + R ++ + L++ + DGR+ + TGR S Sbjct: 570 EVLDQLKTQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHTRYLQ-TLTATGRLS 627 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA--SEGKKLVV 378 QN+P + + +R + +G Sbjct: 628 SVDPNLQNIPTRTEEGK-------------------------QIRKAFVPTNPDGYIF-S 661 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMEL 437 D + +E RVLA ++G+Q +AF+TG D++ T R F++ P +VT R K + Sbjct: 662 CDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKAVNF 721 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y + L ++ ++ E++ + + E + Sbjct: 722 GIVYGIS-----DYGLSKNLGISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAET 776 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 +RR +P ++ KK Sbjct: 777 I-----------------------------------------MHRRRYLPDIHAKKFTVR 795 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R+ +N+ + K+ +Q Sbjct: 796 SF---------------AERTAINSPIQG---SAADIIKIAMINMQ-----------KKL 826 Query: 618 TKAGYD--IVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + +V+ VHDE++ + P + + +M S +PL A+ + Sbjct: 827 DELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADSGWGHNW 883 >gi|320182116|gb|EFW57020.1| DNA polymerase, phage-associated [Shigella boydii ATCC 9905] Length = 533 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 129/354 (36%), Positives = 190/354 (53%), Gaps = 8/354 (2%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 4 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 62 Query: 62 ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + + HNS+F+RTVL+ L P+ RW T+V A ++GLP +L + E L + Sbjct: 63 AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 122 Query: 121 QK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K +EGK LI FCK R H E WR F Y D+ RE++ RL Sbjct: 123 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYNRLPK 182 Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + + EL W+ DQ INDRG C+D+ LA + VD E+ +L + + +T G V ++ Sbjct: 183 WNYQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 242 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + L + G+ L D+ +T +R ++ L ++ R++AS ++ K L+ Sbjct: 243 RDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKEMLAIRLQASTTSTSKYKALM 301 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I + Sbjct: 302 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEAPNAA 355 >gi|273810592|ref|YP_003344973.1| gp38 [Sodalis phage SO-1] gi|258619877|gb|ACV84130.1| gp38 [Sodalis phage SO-1] Length = 1062 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 138/458 (30%), Positives = 215/458 (46%), Gaps = 40/458 (8%) Query: 1 MA---TLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQ 55 M LF+D ET S +DL K G YAE +++ + D+ V+ WDC P MP+ Sbjct: 1 MKDFERLFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPKMPR 60 Query: 56 VLKEALENTDVTI---VAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111 L++AL V N F+R V++ + +D+P+ + T+++A + LP +L Sbjct: 61 ELRKALRQVSRKKAKIVMANGLLFDRLVIREKWGIDLPVSQIEDTMIMAFRHALPGSLDM 120 Query: 112 VGEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVT 168 + L + ++ K + GK LI RFCK R + H E W F Y D+ Sbjct: 121 QCQVLGVDAEHAKDKAGKALIKRFCKPTPKTYKIRRYTRETHPEEWAKFLRYAALDIIAM 180 Query: 169 REIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 RE++ R+ + +E +DQ INDRG+ VDV LA+ + V + +L +E Sbjct: 181 REVYWRIPDWGNTPKEDEILLIDQLINDRGFYVDVDLANAAIKAVQAHKEELKEEAWERF 240 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 G ++ + L L+ + + ++T +L + + R+ AS + Sbjct: 241 GGKLTGNDFLPILRDIAPA---FTIHNAQKSTLNDLLED-PDFPDEGKALIEMRLGASST 296 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 A K N LV +++DGR RG LQ+ GA RT RW+G F PQNL R S + +I Sbjct: 297 ASTKYNPLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRRE 356 Query: 347 PTSITSD----------------------PDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 S S D ++ + VR C+I ++GKK VVAD + + Sbjct: 357 GESDVSFWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNV 416 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 E R LAW+AGE+ L F+ G D+Y T + F + P Sbjct: 417 EGRGLAWVAGEKTALMVFKAGRDIYCETAGKMFGLDPD 454 Score = 181 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 95/300 (31%), Positives = 124/300 (41%), Gaps = 53/300 (17%) Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM--- 485 + EL LGY GG AF + A GL+L T A ++K W A+ + Sbjct: 763 FLVAHNCELGLGYGGGVAAFLQFAKNLGLDLYTMADVMKGTFPDHIWAAAKRGYEYARIN 822 Query: 486 ---------QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 +++ I + C+ +K+ WR+ H + W EL A I N Sbjct: 823 EAKRPPKPGKKDERPTYILPKNVWLTCDAIKRMWREAHPKTVAFWAELEDAVLCAIRNPG 882 Query: 537 AIIARKRRDVPLVYMKKD----------------------KNNLILMLPSGRSLVYRDVG 574 P L + LPSGR + Y + Sbjct: 883 KAYWAGANVRPDGRKALKIVRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIA 942 Query: 575 NNRS-------------------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + + N TTRQ +YTYGGKLTENIVQA+ RDILA M Sbjct: 943 LSVTTEIDEDTGKKRTSTRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMP 1002 Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 AGY+IVL+VHDE++ E PDTD++ L LM P WAKG PL AEG RYRK Sbjct: 1003 GVEAAGYEIVLSVHDELITEVPDTDDYTTEELCALMCDLPIWAKGFPLAAEGDCMYRYRK 1062 >gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142] gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142] Length = 662 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 110/716 (15%), Positives = 212/716 (29%), Gaps = 169/716 (23%) Query: 8 FETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65 ET + + D+ G+ + + L + PV L + + L+ +E+ Sbjct: 63 LETHTVVGLDIETTGLDPHTS--EISLIQIAAPNRPVILIE-FRGITNKETLRRFIEHPK 119 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE--ALKLSS- 120 + V HN FE L ++ WI T+++++ GLP L+ + L + Sbjct: 120 IPKVGHNLAFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTLEEDAKTGVLPIPDL 179 Query: 121 -----QKMEEGKELIARFCKGETHECLYDRNKPNHREAW-----------RLFGEYCKGD 164 K + +EL + + R + + +Y D Sbjct: 180 TRSIKNKKKLKQELNRNLPGSYSLMRVVARELGYSLDKSLQVSDWGKPLTQEQLQYAAND 239 Query: 165 VTVTREIFKRLEPLSSKEQELWYL---------DQTINDRGYCVDVALAHTLNQIVDVER 215 V + + L Q + + G +D+ L + ++ R Sbjct: 240 AAVVLPLREALRNKIIDNQLTDAIQVELGALARVAQMGLMGMGLDLDRWGELAKEIETRR 299 Query: 216 TKLDQELESLTYGLVSSSR-----------CLEKLKTWLFLETGLHLEDLTETTCQRVLS 264 + + + E++ L G+H + ++ T L Sbjct: 300 EDAAKIACQVLKPDHAQLNLFGGEASINLDSNEQVIAAL-ARLGIHTDSTSKDT----LD 354 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCV 323 + P+ + R S++ L +N R+ + + A+ GR+S Sbjct: 355 KLSENHPEVFTIIEYRH-WSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRAAS-GRFSFSN 412 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 Q +PR RSC + + G KL++AD + Sbjct: 413 PNLQQIPR-----------------------------ERQYRSCFVPAPGYKLIIADYSQ 443 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+ A +A + + A+ +DL+ T A +VTK +R +GK + L Sbjct: 444 IELRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKDIDEVTKQERQLGKAVNFGLI--- 500 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G+ + E Sbjct: 501 -----------YGMGATKL------------------------RIYAETNYGVSMTFDEA 525 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 +R + + + + + + + + + Sbjct: 526 QRFRDNFFKGYPGLHQWHQDT------------------------ACKLRTTKVKDIRTL 561 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TK 619 SGR ++D L VQ S DI + + Sbjct: 562 SGRLRRWKDEPP------------------LTSLLNTPVQGTSADITKLALHKLNSDLDE 603 Query: 620 AGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPS-WAKGLPLKAEGYESKRY 673 G ++ VHDEIV E P+ ++ML M S + K +P+ E + + Sbjct: 604 IGGFPIVVVHDEIVLEVPEDHVAEGSAMLEEAMVSAGKRFLKSVPVVVEAAIADSW 659 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 89/556 (16%), Positives = 178/556 (32%), Gaps = 93/556 (16%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 + +D ET T + L + PV L + + L+ +E Sbjct: 68 VVGLDIETTGLDPHTS----------EISLIQIAAPNRPVILIE-FRGITNKETLRRFIE 116 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE--ALKL 118 + + V HN FE L ++ WI T+++++ GLP L+ + L + Sbjct: 117 HPKIPKVGHNLAFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTLEEDAKTGVLPI 176 Query: 119 SS------QKMEEGKELIARFCKGETHECLYDRNKPNHREAW-----------RLFGEYC 161 K + +EL + + R + + +Y Sbjct: 177 PDLTRSIKNKKKLKQELNRNLPGSYSLMRVVARELGYSLDKSLQVSDWGKPLTQEQLQYA 236 Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYL---------DQTINDRGYCVDVALAHTLNQIVD 212 D V + + L Q + + G +D+ L + ++ Sbjct: 237 ANDAAVVLPLREALRNKIIDNQLTDAIQVELGALARVAQMGLMGMGLDLDRWGELAKEIE 296 Query: 213 VERTKLDQELESLTYGLVSSSR-----------CLEKLKTWLFLETGLHLEDLTETTCQR 261 R + + + E++ L G+H + ++ T Sbjct: 297 TRREDAAKIACQVLKPDHAQLNLFGGEASINLDSNEQVIAAL-ARLGIHTDSTSKDT--- 352 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWS 320 L + P+ + R S++ L +N R+ + + A+ GR+S Sbjct: 353 -LDKLSENHPEVFTIIEYRH-WSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRAAS-GRFS 409 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380 Q +PR RSC + + G KL++AD Sbjct: 410 FSNPNLQQIPR-----------------------------ERQYRSCFVPAPGYKLIIAD 440 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+ A +A + + A+ +DL+ T A +VTK +R +GK + L Sbjct: 441 YSQIELRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKDIDEVTKQERQLGKAVNFGLI 500 Query: 441 YQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y GA + A T G+++ ++ + + + + ++D+ Sbjct: 501 YGMGATKLRIYAETNYGVSMTFDEAQRFRDNFFKGYPGLHQWHQDTACKLRTTKVKDI-- 558 Query: 500 GTACERVKKAWRQKHS 515 + W+ + Sbjct: 559 -RTLSGRLRRWKDEPP 573 >gi|215426947|ref|ZP_03424866.1| DNA polymerase I [Mycobacterium tuberculosis T92] gi|215430521|ref|ZP_03428440.1| DNA polymerase I [Mycobacterium tuberculosis EAS054] gi|289750174|ref|ZP_06509552.1| DNA polymerase I polA [Mycobacterium tuberculosis T92] gi|289753716|ref|ZP_06513094.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054] gi|289690761|gb|EFD58190.1| DNA polymerase I polA [Mycobacterium tuberculosis T92] gi|289694303|gb|EFD61732.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054] Length = 904 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 91/598 (15%), Positives = 180/598 (30%), Gaps = 136/598 (22%) Query: 95 CTLVLARSNGLPS---ALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 T + A L + +L ++ ++ + + + + Sbjct: 419 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAETIQTTILRA 478 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + + T + E + + + G VD+ + L Sbjct: 479 RAVIDLADALDAELARIDSTALLG-------EMELPVQRVLAKMESAGIAVDLPMLTELQ 531 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSS 265 + + + + + ++L+ LF E G+ T+T T L S Sbjct: 532 SQFGDQIRDAAEAAYGVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQS 590 Query: 266 NKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 P + +R +R V ++ L++A+ +DGR+ T A+ TGR S Sbjct: 591 LFDKTGHPFLQHLLAHR-DVTRLKVT-VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTE 647 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLA 382 QN+P + S +R + +G +L+ AD + Sbjct: 648 PNLQNIPIRT-------------------------DASRRIRDAFVVGDGYAELMTADYS 682 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++G++ ++AF TGEDL+ +R+F V +VT + R K M L Sbjct: 683 QIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL--- 739 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 GL+ + +K Sbjct: 740 -----------AYGLSAYGLSQQLKI------------------------------STEE 758 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 A+ + V + + E+ ++G Sbjct: 759 ANEQMDAYFARFGGVRDYLRAV---VERARKDGYTSTVL--------------------- 794 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 GR ++ ++ R +Q + DI+ M+ KA Sbjct: 795 --GRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAADIIKVAMIQVDKALN 843 Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + L M + +PL+ + + Sbjct: 844 EAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGA--YPLDVPLEVSVGYGRSW 899 >gi|229546723|ref|ZP_04435448.1| DNA polymerase I [Enterococcus faecalis TX1322] gi|229308072|gb|EEN74059.1| DNA polymerase I [Enterococcus faecalis TX1322] Length = 837 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 85/628 (13%), Positives = 182/628 (28%), Gaps = 118/628 (18%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA--- 111 Q + L + +++ L L+ A Sbjct: 315 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGK--MTGIAFDVLLAAYLLDTNDNNADIEG 372 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 V + + + +E E ++ + +A + K D +T + Sbjct: 373 VAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHLARKIKAIQFLT--SKLDSELTEK- 429 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + + E L + + G VD + ++++++ + Sbjct: 430 -NQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAG-EEF 487 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L LF + GL + T+ +T VL K+ P + R ++ Sbjct: 488 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQ-IAKIQS 546 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + L++ + D ++ ++TGR S QN+P + Sbjct: 547 TYVEGLLKVIQPDNKIHTRYVQ-TLTQTGRLSSVDPNLQNIPIRLEEGRK---------- 595 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R + E L+ +D + IE RVLA ++ ++ +AF G+D Sbjct: 596 ---------------IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQD 640 Query: 408 LYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 ++ +T R F V VT + R K + + Y + L + Sbjct: 641 IHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQY-----LGITRKQAQQ 695 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 ++ E++ + + + + + + R ++ + + Sbjct: 696 YIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR--RRYLSDINSRNFNLRSF---AER 750 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 T G A K + R L + Sbjct: 751 TAINTPIQGSAADILKIAMIE----------------MARRLKEEKL------------- 781 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-S 645 QA ++L VHDE+V E P+++ Sbjct: 782 ----------------QAT------------------MLLQVHDELVFEVPESELEQLNQ 807 Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ +M S +PL + K + Sbjct: 808 LVKEVMEHAVS--LHVPLITDSSWGKTW 833 >gi|182439320|ref|YP_001827039.1| DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467836|dbj|BAG22356.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350] Length = 903 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 99/649 (15%), Positives = 176/649 (27%), Gaps = 140/649 (21%) Query: 44 LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 D + + + V HN+ V + T + A Sbjct: 371 WLDPTQLEEADERAFAAWVSDPARPKVLHNAKNVMRVFPEH-GWRLEGVTM-DTALAAYL 428 Query: 103 NGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 AL A+ G+EL D + Sbjct: 429 VKPGRRSFALDALAVEY--------LGRELAPAAASDGQLAFGADDRAEQDALMAQARAV 480 Query: 160 YCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 GD T + + E L + G D A + Q + Sbjct: 481 LDLGDAFTT-RLKEVGAAELLHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQQ 539 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK-----LTPQ 272 +E + + ++L+ LF E GL T+T + Sbjct: 540 AVKEAHAAVG-REFNLGSPKQLQEILFGELGLPKTKKTKTGYTTDADALAWLAAQTEHEL 598 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + + +R + ++ V + L++ + +DGR+ T A+ TGR S QN+P Sbjct: 599 PVLMLRHREQ-AKLRVT-VEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVR 655 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAW 391 + +R + EG L+ AD + IE RV+A Sbjct: 656 TDEGRA-------------------------IRRGFVVGEGFETLMTADYSQIELRVMAH 690 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ + ++AF +GEDL+ T ++ F V V + R K M L Sbjct: 691 LSEDAGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGL------------ 738 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 GL+ + + + A + + Sbjct: 739 --AYGLSAFGLSQQLNIDPA------------------------------EARVLMDTYF 766 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ V + + + + T GR Sbjct: 767 ERFGGVRDYLHRVVEEARAT--------------------------GYTETILGRRRYLP 800 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIV 625 D+ ++ R +Q + DI+ M+ KA ++ Sbjct: 801 DLNSDN---RQRREAAERMALNAP------IQGTAADIVKVAMLRVDKALTEAKLTSRML 851 Query: 626 LTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 L VHDEIV E + + M + PL K + Sbjct: 852 LQVHDEIVLEIAKGERQQVEEILRHEMANAVE--LRAPLDVSVGVGKDW 898 >gi|111224005|ref|YP_714799.1| DNA polymerase I [Frankia alni ACN14a] gi|111151537|emb|CAJ63255.1| DNA polymerase I [Frankia alni ACN14a] Length = 884 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 98/631 (15%), Positives = 177/631 (28%), Gaps = 136/631 (21%) Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL----KAVGEA 115 L + AH+ L L + T + A V Sbjct: 368 WLADAHQPKAAHDVKGPMLALAE-LGLTLA-GVTSDTALAAYLALPGQRSFDLADLVARY 425 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L G + GE E D + + D + R Sbjct: 426 LHRDLAVEPAGNGQLTLDGSGEAEESHADAVRARACLELAD-----ELDADLERR--SAA 478 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 L E L + + G D L + E T + + + + Sbjct: 479 VLLRDMELPLVTVLAGMERAGIAADQDHLTELQKHYGGEVTAVAAQAHEIVGRT-FNLGS 537 Query: 236 LEKLKTWLFLETGLHLEDLTET---TCQRVLSSNK--KLTPQAIQVFNNRMRASRSAVLK 290 ++L+ LF + GL +T T L+ P + +R +R Sbjct: 538 PKQLQQILFDDLGLPKTKKIKTGYTTDADALAWLAVQSDHPLLPVLLRHR-DVARLK-TV 595 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 +++L+ ++ GR+ T + A+ TGR S QN+P + Sbjct: 596 VDSLLPMIDDAGRIHTTFNQMIAA-TGRLSSTDPNLQNIPIRTAEGR------------- 641 Query: 351 TSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R + G L+ AD + IE R++A ++G++ ++AF +GEDL+ Sbjct: 642 ------------QIRRAFVVGPGYETLLTADYSQIEMRIMAHLSGDEGLIEAFGSGEDLH 689 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 A +F + ++V + R K M GL+ Sbjct: 690 TFVAAEAFGLPVSEVDPELRRRIKAMSY--------------GLAYGLS----------- 724 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A + A+ + V + + E Sbjct: 725 -------------------AFGLASQLGIAPDEAREHMDAYFGRFGGVRDFLRGV---VE 762 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + +G GR D+ ++ + R Sbjct: 763 RARRDGYTETML-----------------------GRRRYLPDLTSDNAQRRQM---AER 796 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN 643 +Q + DI+ M+ +A ++L VHDE+V E + Sbjct: 797 MALNAP------IQGSAADIIKIAMLGVDRALRAGGHASRLLLQVHDELVLEIAPGEYDA 850 Query: 644 ASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 L MTS + +PL + + Sbjct: 851 VEALVRAEMTSA--YTMSVPLDVSVGAGRTW 879 >gi|331003770|ref|ZP_08327264.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412153|gb|EGG91548.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon 107 str. F0167] Length = 880 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 81/603 (13%), Positives = 172/603 (28%), Gaps = 139/603 (23%) Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 + V A LK + + G + + N+ Sbjct: 393 KNFYDISVAAYLINP---LKD---SYFVE---DIAGDYMGSACSSKSEMIGKAKLNEVLR 443 Query: 151 REAWRLFGEYCKGDVTVT--------REIFKRLEPLSSKEQELWYL--DQTINDRGYCVD 200 Y + V +++ + K E+ + + + G VD Sbjct: 444 FND-EKAINYFAMESYVAVHSGENILKKLSELGLDDLYKNIEMPLIYSLAKMENTGVRVD 502 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + + KL++ + S + ++L LF + L T+ + Sbjct: 503 EERLKKYANTLLEKIDKLEESIISKAG-ESFNINSPKQLGEILFGKLKLSGGKKTKTGYS 561 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL + R ++ L + DGR+ GT + TG Sbjct: 562 TAADVLEKLALEHEIIRDILEYRQ-LTKLNSTYATGLAGYIREDGRIHGTFNQ-TITATG 619 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P + + +R + G V Sbjct: 620 RISSTEPNLQNIPVRTE-------------------------MGSKIRDIFVPKPGYVFV 654 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA ++G++ ++++ + D++ T ++ F+V +VT + R K + Sbjct: 655 DADYSQIELRVLASLSGDEKLIESYHSAADIHAATASQVFHVPLEEVTPELRRNAKAVNF 714 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 G++ + + Sbjct: 715 --------------GVVYGIS------------------------------AFGLSEDLS 730 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + + V + ++ ++ Sbjct: 731 ISRKEALDYINNYFKIYGGVKKFLDKQVADAKE--------------------------K 764 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 + GR ++ ++ + + + +Q + DI+ M+ Sbjct: 765 GFVKTMFGRIRPIPEIKSSNFMTRSFGDR---------VAMNSPIQGSAADIMKISMLKV 815 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYES 670 +A +IVL +HDE++ E + + S L M S +PL+ + + Sbjct: 816 DEALKESGYDANIVLQIHDELLIEVKEEEAEKVSKLVEKTMKEAVS--LKVPLEVDAHIG 873 Query: 671 KRY 673 K + Sbjct: 874 KTW 876 >gi|219557549|ref|ZP_03536625.1| DNA polymerase I [Mycobacterium tuberculosis T17] gi|260200690|ref|ZP_05768181.1| DNA polymerase I [Mycobacterium tuberculosis T46] gi|289443081|ref|ZP_06432825.1| DNA polymerase I polA [Mycobacterium tuberculosis T46] gi|289569674|ref|ZP_06449901.1| DNA polymerase I polA [Mycobacterium tuberculosis T17] gi|289416000|gb|EFD13240.1| DNA polymerase I polA [Mycobacterium tuberculosis T46] gi|289543428|gb|EFD47076.1| DNA polymerase I polA [Mycobacterium tuberculosis T17] Length = 904 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 91/598 (15%), Positives = 179/598 (29%), Gaps = 136/598 (22%) Query: 95 CTLVLARSNGLPS---ALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 T + A L + +L ++ ++ + + + + Sbjct: 419 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAETIQTTILRA 478 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + + T + E + + + G VD+ + L Sbjct: 479 RAVIDLADALDAELARIDSTALLG-------EMELPVQRVLAKMESAGIAVDLPMLTELQ 531 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSS 265 + + + + ++L+ LF E G+ T+T T L S Sbjct: 532 SQFGDQIRDAADAAYGVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQS 590 Query: 266 NKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 P + +R +R V ++ L++A+ +DGR+ T A+ TGR S Sbjct: 591 LFDKTGHPFLQHLLAHR-DVTRLKVT-VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTE 647 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLA 382 QN+P + S +R + +G +L+ AD + Sbjct: 648 PNLQNIPIRT-------------------------DASRRIRDAFVVGDGYAELMTADYS 682 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++G++ ++AF TGEDL+ +R+F V +VT + R K M L Sbjct: 683 QIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL--- 739 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 GL+ + +K Sbjct: 740 -----------AYGLSAYGLSQQLKI------------------------------STEE 758 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 A+ + V + + E+ ++G Sbjct: 759 ANEQMDAYFARFGGVRDYLRAV---VERARKDGYTSTVL--------------------- 794 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 GR ++ ++ R +Q + DI+ M+ KA Sbjct: 795 --GRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAADIIKVAMIQVDKALN 843 Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + L M + +PL+ + + Sbjct: 844 EAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGA--YPLDVPLEVSVGYGRSW 899 >gi|313892366|ref|ZP_07825958.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E] gi|313119225|gb|EFR42425.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E] Length = 857 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 92/596 (15%), Positives = 180/596 (30%), Gaps = 140/596 (23%) Query: 92 RWICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 ++ ++A VGE K+ S ++E + + D Sbjct: 384 KFYDVTLIAYLLDPTHVTYNRSYVGELFKVPSIYIDEN------ASFEQNGNMIADFLLA 437 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + ++ L K D+ + EQ L + + G +D + Sbjct: 438 LYTSSYELLV---KNDIEKLFK---------EVEQPLIEVLAEMEKNGISIDEENWKKVR 485 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 + + + KL E+ + ++L LF + G+ T+ +T VL S Sbjct: 486 KSMKEKEEKLLLEIYREAG-EEFNVNSPKQLSHILFDKMGMPTGKKTKTGYSTAADVLES 544 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 P + R ++ L+ + + + + T + TGR S Sbjct: 545 LAIDYPFVKNILEYR-TLAKLISTYLDAIPLLVRKETKRVHTSFNQMVTATGRLSSSDPN 603 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGI 384 QN+P + + +RS + EG + +D + + Sbjct: 604 LQNIPVRTEEGK-------------------------VIRSLFVPGEGYDFFISSDYSQV 638 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RVLA M+G++ ++AFE ED++ T + F V +VT +QR+ K + + Y Sbjct: 639 ELRVLAHMSGDEGLIRAFENKEDIHRRTASEVFGVPFEEVTSEQRSHAKAVNFGIIYGIS 698 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 + L + Sbjct: 699 -----DFGLSKQLG---------------------------------------ISRKKAD 714 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 K + +++ + E ++ + +T + + Sbjct: 715 EYIKTYLKRYPGIHEFMKKMTEEARKTGK--------------------------VKTLF 748 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---- 620 GR D+ + R +Q + DI+ M+ + Sbjct: 749 GRYRDLPDINSKNF---QRRSFAERTAMNTP------IQGSAADIMKIAMIQVYEKMKKG 799 Query: 621 --GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 I+L VHDE+V E + +L M S S + L A+ + K + Sbjct: 800 KYKSRILLQVHDELVVEAVKEEVEEISKLLKETMESVVS--LKVKLVADVHVGKNW 853 >gi|209972970|ref|YP_002300417.1| gp31 [Bacillus phage SPO1] gi|209871290|gb|ACI91046.1| gp31 [Bacillus phage SPO1] Length = 925 Score = 263 bits (672), Expect = 8e-68, Method: Composition-based stats. Identities = 104/767 (13%), Positives = 218/767 (28%), Gaps = 202/767 (26%) Query: 4 LFIDFETRSPID------LTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPV--- 52 + ID ET + K + Y ++ ++ H Sbjct: 209 VVIDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENLMP 268 Query: 53 ------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-- 104 + + L++ LE D+ +AHN F+ L+A ++ + W T+++ Sbjct: 269 GNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDTLIW-DTMLIHYLCITE 327 Query: 105 --LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 LK + ++ + + + W + Y Sbjct: 328 EKGTHGLKDLA----------WLETDMGGYDDALDGEKPKGEDEGNYDLIPWDILKVYLA 377 Query: 163 GDVTVTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT + ++ P + +Y I G VD L Sbjct: 378 DDCDVTFRLSEKYIPLVEENEEKKWLWENIMVPGYYTLLDIEMDGIHVDREWLEVLRVSY 437 Query: 212 DVERTKLDQELESLT--------------------------------------------- 226 + E ++L+ ++ Sbjct: 438 EKEISRLEDKMREFPEVVAMEREMRDKWKERVMIGNIKSANRTPEQQDKFKKYKKYDPSK 497 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 G + ++L LF GL + +T L + +V + Sbjct: 498 GGDKINFGSTKQLGELLFERMGLETVIFTDKGAPSTNDDSLKFMGSQSDFV-KVLMEFRK 556 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A+ ++ L ++ D + + G + TGR S Q PR Sbjct: 557 ANHLYNNFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRK---------- 605 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + L + ++ + +G +V D + +E R+LA + + + Sbjct: 606 ---------VNTPTLFQYNFEIKKMFNSRFGDGGVIVQFDYSQLELRILAVITQDPTLID 656 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 + +G DL+ + +F VA +V+KDQR K ++ + YQ A+ + G+ Sbjct: 657 LYRSGADLHKAVASDAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGI--- 713 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 CE K + ++ +VS+ Sbjct: 714 ------------------------------------TMSEDECEIFIKKYFKRFPKVSKW 737 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + ++ + +GR+ D+ + Sbjct: 738 IRDTKKHVKRHK--------------------------YVKTLTGRTRNLPDIDSIDQ-- 769 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVC 634 + + R+ +Q D ++ + I +TVHD IV Sbjct: 770 -SKANEAERQA------VNTPIQGTGSDCTLMSLILINQWLRESGLRSRICITVHDSIVL 822 Query: 635 ETPDTDE-FNASMLYHLMTSNPSWAK------GLPLKAEGYESKRYR 674 + P + A + H+M + + + +P+ +E + Y Sbjct: 823 DCPKDEVLEVAKKVKHIMENLGEYNEFYKFLGDVPILSEMEIGRNYG 869 >gi|314929350|gb|EFS93181.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1] Length = 892 Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 98/662 (14%), Positives = 183/662 (27%), Gaps = 133/662 (20%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFN 85 V A G D +D + L + + H++ L Sbjct: 344 SGDVEAVALGCVDGHAVWFDAAELDPEDEKSFAAWLADNECPKAMHSAKGPVEALA-GRG 402 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 ++ T + + + K + + L Sbjct: 403 WEVAGLTC-DTELASYLLHPDR------RSHKFDDAVRTHLNLTLGEGEENSDQAMLDFG 455 Query: 146 NKPNHREAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 N + R DV E E L E + ++ G VD + Sbjct: 456 NDSSAESMERAVAVTKLADVMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDIL 515 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261 L D T+ + + ++L+ LF + + T++ T Sbjct: 516 EGLRSEFDERVTRAQGAAWEAAGEKI-NLSSPKQLQGVLFEKLDMPKTRRTKSGYTTDAD 574 Query: 262 VLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 L+ + P + +R ++ L++ + DGR+ T A+ TGR Sbjct: 575 ALAGLYEKTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTIAA-TGRL 631 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVV 378 S QN+P + +R + EG + L+ Sbjct: 632 SSKDPNLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLS 666 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++G+Q + AF +G+D + T + F VAP V+ QR+ K M Sbjct: 667 ADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG 726 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 GL+ + + Sbjct: 727 --------------LAYGLS------------------------------AYGLSNQLKV 742 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + + + + +V E L + +Q G Sbjct: 743 SVGEAKELMAGYFSRFGKVHEY---LEEVVDQARRQGYTETLL----------------- 782 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM--- 615 GR D+ + R +Q + D++ M+ Sbjct: 783 ------GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMVATD 827 Query: 616 -NATKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 +AG ++L VHDE++ E +E + M +PL + Sbjct: 828 QKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHAME--LSVPLTVSIGVGR 885 Query: 672 RY 673 + Sbjct: 886 SW 887 >gi|313837440|gb|EFS75154.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2] gi|314971647|gb|EFT15745.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3] Length = 883 Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 98/662 (14%), Positives = 183/662 (27%), Gaps = 133/662 (20%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFN 85 V A G D +D + L + + H++ L Sbjct: 335 SGDVEAVALGCVDGHAVWFDAAELDPEDEKSFAAWLADNECPKAMHSAKGPVEALA-GRG 393 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 ++ T + + + K + + L Sbjct: 394 WEVAGLTC-DTELASYLLHPDR------RSHKFDDAVRTHLNLTLGEGEENSDQAMLDFG 446 Query: 146 NKPNHREAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 N + R DV E E L E + ++ G VD + Sbjct: 447 NDSSAESMERAVAVTKLADVMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDIL 506 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261 L D T+ + + ++L+ LF + + T++ T Sbjct: 507 EGLRSEFDERVTRAQGAAWEAAGEKI-NLSSPKQLQGVLFEKLDMPKTRRTKSGYTTDAD 565 Query: 262 VLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 L+ + P + +R ++ L++ + DGR+ T A+ TGR Sbjct: 566 ALAGLYEKTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTIAA-TGRL 622 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVV 378 S QN+P + +R + EG + L+ Sbjct: 623 SSKDPNLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLS 657 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++G+Q + AF +G+D + T + F VAP V+ QR+ K M Sbjct: 658 ADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG 717 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 GL+ + + Sbjct: 718 --------------LAYGLS------------------------------AYGLSNQLKV 733 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + + + + +V E L + +Q G Sbjct: 734 SVGEAKELMAGYFSRFGKVHEY---LEEVVDQARRQGYTETLL----------------- 773 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM--- 615 GR D+ + R +Q + D++ M+ Sbjct: 774 ------GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMVATD 818 Query: 616 -NATKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 +AG ++L VHDE++ E +E + M +PL + Sbjct: 819 QKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHAME--LSVPLTVSIGVGR 876 Query: 672 RY 673 + Sbjct: 877 SW 878 >gi|295395318|ref|ZP_06805522.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC 49030] gi|294971869|gb|EFG47740.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC 49030] Length = 867 Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats. Identities = 101/679 (14%), Positives = 182/679 (26%), Gaps = 178/679 (26%) Query: 33 FAFGFDDHP--------VELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 F +D D D L + + +VAH+ V Sbjct: 326 VGFALEDDTLGLASNDSAIWVDLTDLDENSFNALDTFI--STKKVVAHDVK--PQVHAWV 381 Query: 84 FNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 + T + A +L + L + Sbjct: 382 ERGFTQPRPIMDTELAAYLLAPDARGYSLADMASDLGV---------------------- 419 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQ 190 R+ GE VT ++ RL + + Sbjct: 420 -----VLEEDRDLLTDVGEQLGHRAWVTVALYPRLRQDLERNHLQDVLDGIEIPTQEILA 474 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G +D ++ + L + + E + V + ++L+T LF E + Sbjct: 475 RMEIAGIAIDQSVLNELITEFEAAAQQSASEAYASIGHEV-NLNSPKQLQTVLFDELNMP 533 Query: 251 LEDLTET---TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 T+T T L+ K P + +R R + L + + DGR+ Sbjct: 534 KTKRTKTGYTTDADSLADLLVKTQHPFLEHLLAHRDRTKLKQT--VVGLQKVVADDGRIH 591 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 T A+ TGR S QN+P + + +R Sbjct: 592 TTYLQTVAA-TGRLSSKDPNLQNIPVRTDAGRR-------------------------IR 625 Query: 366 SCVIA--SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 S A +G + L+ D + IE R++A ++G++ ++AF+ GEDL+ + F V Sbjct: 626 SVFQAAQDDGYESLMSVDYSQIEMRIMAHLSGDEALIQAFKDGEDLHRYVAGQVFEVPIE 685 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 VT QR+ K M L GL+ Sbjct: 686 DVTDQQRSKVKAMSYGLV--------------YGLS------------------------ 707 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + + + + + V E +++ + Sbjct: 708 ------AYGLSRQLGIPTGEASALMDDYFARFGAVKEYLDQVVEEAR------------- 748 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 GR + ++R R + Sbjct: 749 -------------GRGYTETMYGRRRYLPQLRSDR---RQLREMAERAALNAP------I 786 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655 Q + DI+ M A ++L VHDEI+ E + L M+ Sbjct: 787 QGSAADIMKIAMKRVDDALREAELKSRMLLQVHDEIILEIWAGEAIQVEKLVRENMSQAA 846 Query: 656 SWAKGLPLKAEGYESKRYR 674 +PL ++ Sbjct: 847 D--LSVPLDVNVGVGPNWQ 863 >gi|290068|gb|AAC36974.1| DNA polymerase [Deinococcus radiodurans R1] gi|737486|prf||1922368A DNA polymerase I Length = 921 Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats. Identities = 84/528 (15%), Positives = 147/528 (27%), Gaps = 127/528 (24%) Query: 165 VTVTREIFKRLEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVER 215 +T + + L PL + Y + + RG VD TL+ V Sbjct: 498 AAITGHLVRELPPLLDDARRKMYDEMEKPLSGVLGRMEVRGVQVDSDFLQTLSIQAGVRL 557 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLT 270 L+ ++ G R ++L+T L+ + L T+ +T L + Sbjct: 558 ADLESQIHE-YAGEEFHIRSPKQLETVLYDKLELASSKKTKLTGQRSTAVSALEPLRDAH 616 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 P V R + L+ + +N T A TGR S QN+P Sbjct: 617 PIIPLVLEFR-ELDKLRGTYLDPIPNLVNPHTGRLHTTFAQTAVATGRLSSLNPNLQNIP 675 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 S E +R IA +G L+ AD + IE R+LA Sbjct: 676 IRSELGRE-------------------------IRKGFIAEDGFTLIAADYSQIELRLLA 710 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 +A + +AF G D++ T A+ + A V +QR K + Sbjct: 711 HIADDPLMQQAFVEGADIHRRTAAQVLGLDEATVDANQRRAAKTVN-------------- 756 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 G++ + + + + Sbjct: 757 FGVLYGMS------------------------------AHRLSNDLGIPYAEAATFIEIY 786 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + N + + + GR Sbjct: 787 FATYPGIRRYIN------------------------HTLDFGRTHG--YVETLYGRRRYV 820 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVL 626 + + R +Q + DI+ M+ G ++L Sbjct: 821 PGLSSRN---RVQREAEERLAYNMP------IQGTAADIMKLAMVQLDPQLDAIGARMLL 871 Query: 627 TVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE++ E P + L +M + +PL E + Sbjct: 872 QVHDELLIEAPLDKAEQVAALTKKVMENVVQ--LKVPLAVEVGTGPNW 917 >gi|319950978|ref|ZP_08024849.1| DNA polymerase I [Dietzia cinnamea P4] gi|319435360|gb|EFV90609.1| DNA polymerase I [Dietzia cinnamea P4] Length = 899 Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats. Identities = 99/674 (14%), Positives = 189/674 (28%), Gaps = 142/674 (21%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 A D + A D P Q L+ L + V H++ L Sbjct: 338 AGDAQTVTIAAA--GGASAHVDLAAIGPDDEQALQGWLGDDAVHKAVHDAKAATHAL--- 392 Query: 84 FNLDIPIHRWICTL---VLARSNGLPSALKAVGE----ALKLSSQKMEEGKELIARFCKG 136 D+ + T+ + A + E L+ + E ++ ++ + Sbjct: 393 MGRDLRLGGV--TMDVALAAYLVRPGQRSYGLAELFQRHLRRELPEAEAAEKQLSLLDEV 450 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + E A + + DV + ++ ++ E L + + G Sbjct: 451 DDAEAAQRAADAAATRARAVVDLAERLDVELE-QVHGATL-MAEMELPLVPVLARMESIG 508 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-- 254 VD + + L + + + G + ++L+ LF G+ Sbjct: 509 IAVDASALNGLRDDFADRGRQAAEAAYAAIGGEQINLGSPKQLQVVLFETLGMPKTKKTK 568 Query: 255 -----TETTCQRVLSSNKKLTPQAIQV--FNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 + +L+ TP + ++ + L++ + D R+ T Sbjct: 569 TGYTTDAKALEELLAKETGDTPGRAFLEALLLHRETTKMRTT-VEGLIKTIGDDRRIHTT 627 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 A+ TGR S QN+P + +R Sbjct: 628 FNQTVAA-TGRLSSTDPNLQNIPVRTEDGRR-------------------------IRGS 661 Query: 368 VIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 + EG L+ AD + IE RV+A ++G+ ++AF TGEDL+ +R+F V QVT Sbjct: 662 FVVGEGYDCLLTADYSQIEMRVMAHLSGDAGLIEAFRTGEDLHSFVGSRAFGVPIDQVTP 721 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R K M L GL+ A Sbjct: 722 ELRRRVKAMSYGL--------------AYGLSAFGLAAQ--------------------- 746 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 +A+ + V + + + + Sbjct: 747 ---------LGISQGEAREQMEAYFSRFGGVRDYLQAVVEQARK---------------- 781 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 + GR ++ ++ R +Q + Sbjct: 782 ----------DGYTETLFGRRRYLPELNSDN---RLKRENAERAALNAP------IQGTA 822 Query: 607 RDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAK 659 DI+ M+ ++L VHDE+V E + ++ M S Sbjct: 823 ADIIKAAMLKVDADLTARGLKSRLLLQVHDELVLEVAPGELDEVRGLVVDRMYSAIE--L 880 Query: 660 GLPLKAEGYESKRY 673 +PL + Sbjct: 881 DVPLDVSTGTGPNW 894 >gi|225630667|ref|YP_002727458.1| DNA polymerase I [Wolbachia sp. wRi] gi|225592648|gb|ACN95667.1| DNA polymerase I [Wolbachia sp. wRi] Length = 858 Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats. Identities = 87/650 (13%), Positives = 179/650 (27%), Gaps = 146/650 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 + + + + + + L + V + HN R + A + + Sbjct: 327 LSLSYSESNIFYIEQDSIQDALITINSTLLSNGVLKIIHNIKEIRKIFPATEKM---LDS 383 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 ++++ +L + + E F + +E Sbjct: 384 VDDLMIMSY------SLDTGKHDHSIPNIVAHNLSENAEIFSAKTLIAIHEKLKQRLFQE 437 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 F Y + D + L + + G +++ L+ Sbjct: 438 KL--FTIYERFD------------------KPLMKVIFDMEKNGILLNIQKLQELSDKFQ 477 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNK 267 L+ E+ +L + ++L LF + GL+ + ++ T VL + + Sbjct: 478 QVIAVLEDEIYNLAG-ERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALE 536 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + N S+ + L++ ++ T A+ TGR S Q Sbjct: 537 EEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATATGRLSSSNPNLQ 596 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P S +R IA +G K++ AD + IE R Sbjct: 597 NIPIRSEEGN-------------------------LIRQAFIAPKGHKIISADYSQIELR 631 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA +A +AF +D++ T + F V ++ + R K + Sbjct: 632 LLAHVANVAAFKEAFANEQDIHDITARQVFGV--QEIDEQLRRKAKSIN----------- 678 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A Sbjct: 679 ---FGIIYGISPFGLAKR------------------------------LGITIAEAAEYI 705 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + + +A +G GR Sbjct: 706 NYYFSCYPEIKVYM---EKAVSIARLHGYVETL-----------------------FGRR 739 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-TKAGY-DIV 625 RD+ N Y+ R Q + DI+ + + I+ Sbjct: 740 CFVRDINNTIPYVRQF---AERAAINAPL------QGTAADIIKRATIQLFDQLKVGKII 790 Query: 626 LTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 L VHDE++ E + + A ++ +M + +PL+ E + Sbjct: 791 LQVHDELLVEVEDEKVQETAKLMKDIMENAIE--ISVPLEVEIKVGDNWG 838 >gi|91206022|ref|YP_538377.1| DNA polymerase I [Rickettsia bellii RML369-C] gi|157826616|ref|YP_001495680.1| DNA polymerase I [Rickettsia bellii OSU 85-389] gi|123388086|sp|Q1RH76|DPO1_RICBR RecName: Full=DNA polymerase I; Short=POL I gi|91069566|gb|ABE05288.1| DNA polymerase I [Rickettsia bellii RML369-C] gi|157801920|gb|ABV78643.1| DNA polymerase I [Rickettsia bellii OSU 85-389] Length = 871 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 88/639 (13%), Positives = 184/639 (28%), Gaps = 150/639 (23%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107 + ++ L + + + ++ +LK + I ++ + Sbjct: 368 ADNEWFTDIIFNLLTDQSIKKITYSLK---PLLKFYASRAQQITAIEDLELMNYALSAGL 424 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 K + EA E + I K + + + F Y + D+ V Sbjct: 425 PQKNLFEA--------VEKEATIEEAAKIVVGFIDLYQQTILELKDNKAFRIYKEIDLPV 476 Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + + G VD + L+ E KL++E+ L+ Sbjct: 477 CF------------------VIDKMEKAGIKVDANYLNQLSSEFGAEILKLEEEIFVLSG 518 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L LF + L + +T +L + + + Sbjct: 519 MK-FNIGSPKQLGEILFEKMQLPFGKTSAKANSYSTGADILEKLSEQGYPIADLLLRWRQ 577 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ ++L + +++ R T ++ TGR S QN+P S + Sbjct: 578 LTKLKNTYTDSLPKQIDNITRRIHTTFLQTSTTTGRLSSQEPNLQNVPIRSGEGNK---- 633 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R +A +G KL+ AD + IE R+L+ +A + +AF Sbjct: 634 ---------------------IRQAFVAEQGYKLISADYSQIELRILSHIADIKALKQAF 672 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 +D++ T + FN+ ++T + R K + G++ Sbjct: 673 INKDDIHTQTACQIFNLQKEELTSEHRRKAKAIN--------------FGIIYGIS---- 714 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + T K + ++ V E Sbjct: 715 --------------------------AFGLAKQLNVSNTEAAEYIKKYFAEYKGVQEYME 748 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + N + GR + + R Sbjct: 749 ATKSFAQ--------------------------ANGYVTDFFGRKCFVPLINDKR----- 777 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCET 636 + R +Q + DI+ M + K +VL +HDE++ E Sbjct: 778 LKQFAERAAINAP------IQGTNADIIKIAMTLLDREIEKRKLKTRLVLQIHDELLFEA 831 Query: 637 PDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 P + ++ +M + S +P+ E + Sbjct: 832 PIDEIETIMPIIKQIMEN--STNMDVPIITEIRAGNNWM 868 >gi|256830888|ref|YP_003159616.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028] gi|256580064|gb|ACU91200.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028] Length = 861 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 102/564 (18%), Positives = 175/564 (31%), Gaps = 129/564 (22%) Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ---- 183 EL A E +R + + + E V + S Sbjct: 404 ELAAYLLSPEERNYSLERIRDGLGDEIDVHRENHGQAVLAVGRLLHARLAGSELLGLLQD 463 Query: 184 ---ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 L + + RG +D A H +V E +L + + + R ++L Sbjct: 464 LELPLTEVLVRMQKRGIRIDAARFHDFLGMVQAELDRLTRTIHEQAG-EEFNIRSSQQLA 522 Query: 241 TWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF GL + T +T VL P V RM + L + + Sbjct: 523 EVLFSRLGLACKQKTPGGAQSTSSSVLEGLAAEHPIVADVLEFRMY-EKLRSTYLEPMPQ 581 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + +GR+ T L A+ TGR S QN+P Sbjct: 582 LADKNGRIHTTFNQL-ATATGRLSSSNPNLQNIPIRGA---------------------- 618 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 + +RSC +AS G +LV AD + IE RVLA M+G+Q +AF G+D++ T Sbjct: 619 ---LGPRMRSCFVASPGNRLVAADYSQIELRVLAHMSGDQTLTEAFAAGDDIHARTAGIL 675 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F+ +V+ D+R K + G+ Sbjct: 676 FDTT--EVSADERRKAKTINF--------------GLLYGMGPQ---------------- 703 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 + E + + K SRV E + E+ + Sbjct: 704 --------------KLGRELGISLKEAKEFIAVYFSKLSRVREFYEEIEAGAKS------ 743 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 + +GR + ++ + + + Q R Sbjct: 744 --------------------LGYVTTLAGRRRMLPEINSRNTNMAQ---QARRMAI---- 776 Query: 597 LTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA-SMLYH 649 +VQ + DI+ + M+ K G ++L +HDE++ E P + Sbjct: 777 --NTVVQGSAADIIKKAMLEVDKSPVIGELGASLILQIHDELLLEAPAARAREVGEAVAG 834 Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673 +M S ++ +PL + + Sbjct: 835 IMASV--YSLSVPLVVDWGVGDDW 856 >gi|162456959|ref|YP_001619326.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] gi|161167541|emb|CAN98846.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] Length = 537 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 84/522 (16%), Positives = 150/522 (28%), Gaps = 79/522 (15%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 L +D S ++ V A + H + Sbjct: 68 LALDVLATSREPMS----------AHVCGVALACEPGQAVYVPLGHRYLGAPAQLSMSDI 117 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111 V+ L + ++ V H+ F +L + + + T++ + L Sbjct: 118 DAVMGPLLADPELPKVGHDVKFCEVILLRH-RIGL-VGVSFDTMLASYLLDPEGKNQLHE 175 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E E G ++ R Y V + Sbjct: 176 LAER--------ELGAKMQTLDEVAPKRRGQAQRALDE--IELGEASSYGAAFADVALSL 225 Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 RL P E L + + G VD L + E L+Q+ Sbjct: 226 TDRLRPRLRVEKLEDLLVQIELPLSAVLAEMELTGVLVDPQALAQLGAQMTTELAALEQK 285 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278 + + + ++L+ LF E L + T+ +T VL + + P V Sbjct: 286 AREIVGHDI-NLASPKQLEAVLFDELKLRSQRKTKTGRSTDADVLEALSEEHPFPGVVLE 344 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R ++ ++ L +N T + TGR S QN+P + Sbjct: 345 HR-AIAKLKGTYVDALPRLVNPGTGRIHTRWGQAVAATGRLSSQDPNLQNIPIRTELGR- 402 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R +A G +V AD + IE RVLA ++ + Sbjct: 403 ------------------------MIRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVL 438 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF G+D++V T F V A VT + R K + + Y G A L+ Sbjct: 439 VDAFRAGQDVHVRTAMEIFGVDQAGVTAEMRRRSKTINFGVIYGMGESAL-----AKRLD 493 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 ++ ++ A + Sbjct: 494 ISRAEAARFIDACSRICAAATACAALRRSASRRTPPSRGRRR 535 >gi|281205135|gb|EFA79328.1| mitochondrial DNA polymerase A [Polysphondylium pallidum PN500] Length = 1411 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 105/790 (13%), Positives = 202/790 (25%), Gaps = 210/790 (26%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELWDC--VHDPVMPQV 56 D E +DL K +I F+ F D + +V Sbjct: 707 ACDTE-VVDLDLKKQSP---IGHGRIICFSVYCGPDIDFGTGSRLWVDTMGEQGNEILEV 762 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL------PSALK 110 + E+ + V HN F+R + N+D+ TL +AR +L+ Sbjct: 763 FRPYFESESIYKVWHNYGFDRHIFYNH-NIDVKGFG-GDTLHMARLWDAARNGRGGYSLE 820 Query: 111 AVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKPN-HREAWRLFGEYCKGDVT 166 + + L +S K GK I + H + + EY D Sbjct: 821 GLSKELLDNHKTSIKDLFGKNKIKADGLPGKDIIVPPLEVIQRHPKHLETWIEYSSLDAE 880 Query: 167 VTREIFKRLEPLSSK----------------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 +T + + L+ + +L + RG VD+ T+ + Sbjct: 881 LTWNLRENLQAKLQNMVWMNDTNMWDFYHNLWRPFGHLLTDMERRGMKVDIEHLKTVEGV 940 Query: 211 VDVERTKLDQELESLT-------------------------------------------- 226 + + Sbjct: 941 ATKDIQDNMDAFQQWAVKYCPNAKYMNPSSDAQIQQLLFAPTKNVKTKEEMPLEREFETE 1000 Query: 227 ---YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK------------ 267 + + +K++ +L GL T + L Sbjct: 1001 NTEGFIEEGKKKPKKMRPFLLSGLGLPFGSHTASGWPAVDSASLRDLAGNPSKGKYGKIF 1060 Query: 268 ----KLTPQAIQVFNNRMRASR-------------SAVLKLNTLVEAMNSDGRLRGTLQF 310 + + + AS+ + L + +S+ R+ ++ Sbjct: 1061 NHFKDKSEDKEKGEQEGIEASKAITSLLEIGSVGTLLSSFIIPLQKLCDSNHRVHTSVNV 1120 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 + TGR S QN P L+ +R Sbjct: 1121 N--TETGRLSSKRPNLQNQP-------------------------ALEKDRYKIRKAFTC 1153 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 G LVVAD +E R+LA + + + AF+ G D + T + Sbjct: 1154 EPGNTLVVADYGQLELRLLAHITNCRSMINAFKIGGDFHSRTAMGM--------YPHVKE 1205 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 ++ L + G L + A NF + Sbjct: 1206 AVDRGDVLLEWD-------------GDGEPPKPLLKDSFGAERRKAKTLNFSIAYGKTAH 1252 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + + + W V + Q Sbjct: 1253 GLSKDWGVTLKEAQETLDRWYSDRPEVLLWQRKTIQIA---------------------- 1290 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + GR + D+ N + + R Q + DI+ Sbjct: 1291 ----NTHKWTRTLMGRYRMLPDIDNPAKGMKGHS---ERASINTPL------QGGAADIV 1337 Query: 611 AEGMM------NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663 + M+ + G+ +++ +HDE++ E P+ A + LM++ + + L Sbjct: 1338 MKAMLMIEEDKRLKELGFQLIMQIHDELILEGPEQHAKEAREIVMRLMSNPLNTPLLVEL 1397 Query: 664 KAEGYESKRY 673 + +K + Sbjct: 1398 VVDCRFAKTW 1407 >gi|330469201|ref|YP_004406944.1| DNA polymerase i [Verrucosispora maris AB-18-032] gi|328812172|gb|AEB46344.1| DNA polymerase i [Verrucosispora maris AB-18-032] Length = 899 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 97/639 (15%), Positives = 179/639 (28%), Gaps = 129/639 (20%) Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106 D L L + V H+S A + T + A Sbjct: 370 DESDEAALAGWLADETRPKVLHDSKPAVLAFAAH-GWTLAGIA-RDTQIAAYLARPDQRS 427 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 L + + + + G + ++N H D Sbjct: 428 YDLTDLALRYLHRELR-VDVPDDGQLTLDGLGGDGEAEQNLMLHA--RATLDLADAIDAE 484 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 ++R+ + ++ E L + + G D L E Q ++ Sbjct: 485 LSRDGEQSARLMAGVELPLMRVLAGMERVGIAADTDYLSELEAHFAAEVKAAAQAAYAVI 544 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN-KKLTPQAIQVFNNRMR 282 + ++L+ LF E L +T T L + + Sbjct: 545 G-REFNLGSPKQLQEILFGELNLPKTKKIKTGYTTDADALQWLYAQTEHPLLHHLLRHRD 603 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 +R ++ L+++++ DGR+ T A+ TGR S QN+P + Sbjct: 604 VARLKST-VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRTEEGRR---- 657 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKA 401 +R + EG + L+ AD + IE R++A ++G++ ++A Sbjct: 658 ---------------------IRRAFVVGEGYECLLTADYSQIEMRIMAHLSGDEALIEA 696 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F +G D + T + F VA A+VT DQR K M GL+ Sbjct: 697 FNSGHDFHAATASSVFEVAVAEVTPDQRRKIKAMNY--------------GLAYGLSAFG 742 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + + + V + Sbjct: 743 LSQQ------------------------------LGITAEEARGLMEVYFAGFGGVRDYL 772 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 E+ Q + GR D+ ++ Sbjct: 773 QEVVARARQ--------------------------DGYTSTILGRRRYLPDLVSDN---R 803 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635 R +Q + DI+ M++ A ++L VHDE+V E Sbjct: 804 QRREMAERMALNAP------IQGSAADIIKVAMLHVDTALRDAGLRSRMLLQVHDELVFE 857 Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + L M + +PL+ E + + Sbjct: 858 VAPGERATLEELVRREMGGA--YPLSVPLEVSVGEGRDW 894 >gi|38146971|gb|AAR11870.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 88/624 (14%), Positives = 183/624 (29%), Gaps = 129/624 (20%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + +K+ L + V ++ +L F+ I ++ + + + Sbjct: 346 KAIKDLLTLQSIQKVVYDLK---NILHKVDFDEANQIKNCNDVMLASYVLDSTRSSYDL- 401 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + L + + +R L+ E K ++ Sbjct: 402 -------------ETLFISYLNTDIAAIKENRWAGATVLLRNLWDELSKL-----IDLNS 443 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 S E L + + G+ VD + ++ + KL+ ++ + + Sbjct: 444 AQYVYESIEMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAG-EWFNI 502 Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF + L + T+ +T VL + + RM ++ Sbjct: 503 NSPKQLSYILFEKLKLPVVKKTKTGYSTDAEVLEELYDKHDIIPLILDYRMY-TKILTTY 561 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 LV+A+N T + TGR + QN+P + Sbjct: 562 CQGLVQAINPATGRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGK------------- 608 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R + EG L+ AD + IE R+LA ++ ++ + AF+ D++ Sbjct: 609 ------------LIRKAFVPDEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHS 656 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T A F V +QVT R+ K + + Y + + ++ N Sbjct: 657 QTAAEIFGVDISQVTPIMRSQAKAVNFGIVYGIS-----DYGLSRDIKISRKEAAEFINR 711 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 E++ + + + + E+ +R K + + + + Sbjct: 712 YFEKYPKVKEYLDNVVKFARENGFVLTIFNR--KRYIKDIKSTNKNLRNY---AERIAMN 766 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + G A K + VY+ + N Sbjct: 767 SPIQGSAADIMKIAMI---------------------RVYKKLKENNLKSR--------- 796 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH- 649 I+ L VHDE++ E+P ++ + Sbjct: 797 ------------------II---------------LQVHDELLIESPYEEKEIVKEIVKS 823 Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673 M + +PL E E + Sbjct: 824 EMENAV--LLKVPLVVEVKEGSNW 845 >gi|29832769|ref|NP_827403.1| DNA polymerase I [Streptomyces avermitilis MA-4680] gi|29609889|dbj|BAC73938.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680] Length = 907 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 102/647 (15%), Positives = 183/647 (28%), Gaps = 143/647 (22%) Query: 44 LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +D + L + V HN+ V + T + A Sbjct: 375 WFDPSQLDEADENAFATWLADPAKPKVLHNAKGVMRVFAEH-GWTVEGVSM-DTALAAYL 432 Query: 103 NGLPS---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 AL A+ E L + +A + FG Sbjct: 433 VKPGRRSFALDALSLEYLGRELEPAATADGQLAFGADEGAEADALMVQARAILDLGEAFG 492 Query: 159 EYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 E + + E L + G D A + Q+ Sbjct: 493 E----------RLKEVGSADLLRDMELPTSALLARLERHGIAADKAHLEAMEQMFAGAVQ 542 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK----KLTPQ 272 + +E + + ++L+ LF E GL T+T + + + Sbjct: 543 QAVKEAHAAAGH-EFNLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAAQTDNE 601 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + ++ V + L++ + +DGR+ T A+ TGR S QN+P Sbjct: 602 LPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVR 659 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAW 391 + +R + EG + L+ AD + IE RV+A Sbjct: 660 TDEGRA-------------------------IRRGFVVGEGFESLMTADYSQIELRVMAH 694 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ ++ ++AF +GEDL+ T ++ F V + V + R K M L Y Sbjct: 695 LSEDEGLIEAFTSGEDLHTTVASQVFGVERSAVDAEMRRKIKAMSYGLAY---------- 744 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 GL+ + + ++ + + Sbjct: 745 ----GLSAFGLSQQLNIDAG------------------------------EARALMDTYF 770 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ V + L +A ++ G GR Sbjct: 771 ERFGGVRDY---LRRAVDEARATGYTETL-----------------------FGRRRYLP 804 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625 D+ ++ R +Q + DI+ M+N +A ++ Sbjct: 805 DLNSDN---RQRRETAERMALNAP------IQGTAADIVKIAMLNVDRALQEANLKSRML 855 Query: 626 LTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA---EGY 668 L VHDEIV E + L M S PL +G Sbjct: 856 LQVHDEIVLEIAPGERAKTEELVRREMASAVQ--LRAPLDVSVGDGG 900 >gi|38146969|gb|AAR11869.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 88/624 (14%), Positives = 183/624 (29%), Gaps = 129/624 (20%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + +K+ L + V ++ +L F+ I ++ + + + Sbjct: 346 EAIKDLLTLQSIQKVVYDLK---NILHKVDFDEANQIKNCNDVMLASYVLDSTRSSYDL- 401 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + L + + +R L+ E K ++ Sbjct: 402 -------------ETLFISYLNTDIAAIKENRWAGATVLLRNLWDELSKL-----IDLNS 443 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 S E L + + G+ VD + ++ + KL+ ++ + + Sbjct: 444 AQYVYESIEMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAG-EWFNI 502 Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF + L + T+ +T VL + + RM ++ Sbjct: 503 NSPKQLSYILFEKLKLPVVKKTKTGYSTDAEVLEELYDKHDIIPLILDYRMY-TKILTTY 561 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 LV+A+N T + TGR + QN+P + Sbjct: 562 CQGLVQAINPATGRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGK------------- 608 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R + EG L+ AD + IE R+LA ++ ++ + AF+ D++ Sbjct: 609 ------------LIRKAFVPDEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHS 656 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T A F V +QVT R+ K + + Y + + ++ N Sbjct: 657 QTAAEIFGVDISQVTPIMRSQAKAVNFGIVYGIS-----DYGLSRDIKISRKEAAEFINR 711 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 E++ + + + + E+ +R K + + + + Sbjct: 712 YFEKYPRVKEYLDNVVKFARENGFVLTIFNR--KRYIKDIKSTNKNLRNY---AERIAMN 766 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + G A K + VY+ + N Sbjct: 767 SPIQGSAADIMKIAMI---------------------RVYKKLKENNLKSR--------- 796 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH- 649 I+ L VHDE++ E+P ++ + Sbjct: 797 ------------------II---------------LQVHDELLIESPYEEKEIVKEIVKS 823 Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673 M + +PL E E + Sbjct: 824 EMENAV--LLKVPLVVEVKEGSNW 845 >gi|38146973|gb|AAR11871.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 88/624 (14%), Positives = 182/624 (29%), Gaps = 129/624 (20%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + +K L + V ++ +L F+ I ++ + + + Sbjct: 346 EAIKHLLTLQSIQKVVYDLK---NILHKVDFDETNQIKNCDDVMLASYVLDSTRSSYDL- 401 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + L + + +R L+ E K ++ Sbjct: 402 -------------ETLFISYLNTDIAAIKENRWAGATVLLRNLWDELSKL-----IDLNS 443 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 S E L + + G+ VD + ++ + KL+ ++ + + Sbjct: 444 AQYVYESIEMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAG-EWFNI 502 Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF + L + T+ +T VL + + RM ++ Sbjct: 503 NSPKQLSYILFEKLKLPVVKKTKTGYSTDAEVLEELYDKHDIIPLILDYRMY-TKILTTY 561 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 LV+A+N T + TGR + QN+P + Sbjct: 562 CQGLVQAINPVTGRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGK------------- 608 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R + EG L+ AD + IE R+LA ++ ++ + AF+ D++ Sbjct: 609 ------------LIRKAFVPDEGYMLIDADYSQIELRILAHISEDERLINAFKNNLDIHS 656 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T A F V +QVT R+ K + + Y + + ++ N Sbjct: 657 QTAAEIFGVDISQVTPIMRSQAKAVNFGIVYGIS-----DYGLSRDIKISRKEAAEFINR 711 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 E++ + + + + E+ +R K + + + + Sbjct: 712 YFEKYPKVKEYLDNVVKFARENGFVLTIFNR--KRYIKDIKSTNKNLRNY---AERIAMN 766 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + G A K + VY+ + N Sbjct: 767 SPIQGSAADIMKIAMI---------------------RVYKKLKENNLKSR--------- 796 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH- 649 I+ L VHDE++ E+P ++ + Sbjct: 797 ------------------II---------------LQVHDELLIESPYEEKEIVKEIVKS 823 Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673 M + +PL E E + Sbjct: 824 EMENAV--LLKVPLVVEVKEGSNW 845 >gi|58696948|ref|ZP_00372442.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans] gi|58536818|gb|EAL60040.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans] Length = 817 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 87/650 (13%), Positives = 179/650 (27%), Gaps = 146/650 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 + + + + + + L + V + HN R + A + + Sbjct: 286 LSLSYSESNIFYIEQDSIQDALITINSTLLSNGVLKIIHNIKEIRKIFPATEKM---LDS 342 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 ++++ +L + + E F + +E Sbjct: 343 VDDLMIMSY------SLDTGKHDHSIPNIVAHNLSENAEIFSAKTLIAIHEKLKQRLFQE 396 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 F Y + D + L + + G +++ L+ Sbjct: 397 KL--FTIYERFD------------------KPLMKVIFDMEKNGILLNIQKLQELSDKFQ 436 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNK 267 L+ E+ +L + ++L LF + GL+ + ++ T VL + + Sbjct: 437 QVIAVLEDEIYNLAG-ERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALE 495 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + N S+ + L++ ++ T A+ TGR S Q Sbjct: 496 EEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATATGRLSSSNPNLQ 555 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N+P S +R IA +G K++ AD + IE R Sbjct: 556 NIPIRSEEGN-------------------------LIRQAFIAPKGHKIISADYSQIELR 590 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA +A +AF +D++ T + F V ++ + R K + Sbjct: 591 LLAHVANVAAFKEAFANEQDIHDITARQVFGV--QEIDEQLRRKAKSIN----------- 637 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A Sbjct: 638 ---FGIIYGISPFGLAKR------------------------------LGITIAEAAEYI 664 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + + +A +G GR Sbjct: 665 NYYFSCYPEIKVYM---EKAVSIARLHGYVETL-----------------------FGRR 698 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-TKAGY-DIV 625 RD+ N Y+ R Q + DI+ + + I+ Sbjct: 699 CFVRDINNTIPYVRQF---AERAAINAPL------QGTAADIIKRATIQLFDQLKVGKII 749 Query: 626 LTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 L VHDE++ E + + A ++ +M + +PL+ E + Sbjct: 750 LQVHDELLVEVEDEKVQETAKLMKDIMENAIE--ISVPLEVEIKVGDNWG 797 >gi|329940861|ref|ZP_08290141.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] gi|329300155|gb|EGG44053.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] Length = 906 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 98/649 (15%), Positives = 181/649 (27%), Gaps = 140/649 (21%) Query: 44 LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +D + L + V HN+ V I T + A Sbjct: 374 WFDPTEVDEEDERAFAAWLADPARPKVLHNAKGAMRVFAEH-GWTIEGVTM-DTALAAYL 431 Query: 103 NGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE-Y 160 + L+ L + EA L + Sbjct: 432 VKPGRRSFDLDALTLEY----------LGRELAPPAAADGQLAFGADEEAEADALMVQAR 481 Query: 161 CKGDV--TVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 D+ T + + E L + G D A ++ Q+ Sbjct: 482 AILDLGEAFTGRLKEVGAADLLGDMELPTSALLARMERHGIAADRAHLESMEQMFAGAVQ 541 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK----KLTPQ 272 + +E + + ++L+ LF E GL T+T + + + Sbjct: 542 QAVREAHAAAGH-EFNLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAAQTENE 600 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + ++ V + L++ + +DGR+ T A+ TGR S QN+P Sbjct: 601 LPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVR 658 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAW 391 + +R + EG + L+ AD + IE RV+A Sbjct: 659 TDEGRA-------------------------IRRGFVVGEGYESLMTADYSQIELRVMAH 693 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ + ++AF +GEDL+ T ++ F V + V + R K M L Sbjct: 694 LSEDAGLIEAFTSGEDLHTTAASQVFGVERSAVDAEMRRKIKAMSYGL------------ 741 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 GL+ + + +A + +A+ Sbjct: 742 --AYGLSAFGLSQQLGIEAA------------------------------EARTLMEAYF 769 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ V + + + T GR Sbjct: 770 ERFGGVRDYLRRVVEEARAT--------------------------GYTATLFGRRRYLP 803 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625 D+ ++ R +Q + DI+ M+ +A ++ Sbjct: 804 DLNSDN---RQRREAAERMALNAP------IQGTAADIVKIAMLRVGEALRAAGLASRML 854 Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 L VHDEIV E + +L MT+ PL + + Sbjct: 855 LQVHDEIVLEIAPGERERVEALLRREMTTAVHLKA--PLDVSVGVGRDW 901 >gi|71899481|ref|ZP_00681639.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71730794|gb|EAO32867.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 462 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 76/560 (13%), Positives = 147/560 (26%), Gaps = 120/560 (21%) Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------S 180 K + P + +Y D +T + L P Sbjct: 1 ETMKYVDLVGKGAKQIPFSHVGVQEATQYAAEDADITLRLHCVLAPKLLAEPILERVYRE 60 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L + + I G +D + + + Q+ L + ++L+ Sbjct: 61 IEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQKAMDLAGRH-FNLDSPKQLQ 119 Query: 241 TWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF E L +T + L + + R ++ L E Sbjct: 120 VLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHALPRVILEYR-SLAKLRNTYTEKLPE 178 Query: 297 AMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 ++ GR+ GA+ TGR S QN+P + Sbjct: 179 MIHPHTGRVHTNYHQAGAA-TGRLSSSDPNLQNIPIRTDDGRR----------------- 220 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R +A G+KL+ D + IE R++A ++G+ + AFE+G D++ A Sbjct: 221 --------IRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAE 272 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F +VT ++R K + L Y A L ++ + + Sbjct: 273 VFGRGIDEVTPNERRAAKAINFGLIYGMSA-----FGLARQLGISRGEAQDYIALYFDRF 327 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN-ELHQAFEQTIEN 534 +F ++ + + G + + + ++ +A Sbjct: 328 SGVRDFMENTRQQARDRGYVETVFGR------RLYLNSIASGNQTQRAGAERAAINAPMQ 381 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 G A KR V + R Sbjct: 382 GTAADIIKRAMVAVDGWLGVGG-----------------------------HRERA---- 408 Query: 595 GKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTS 653 ++ E+V E + + M + Sbjct: 409 -----------------LMILQVHD-----------ELVFEADEGFVPTLVHEVSARMAA 440 Query: 654 NPSWAKGLPLKAEGYESKRY 673 +PL + + Sbjct: 441 AAQ--LRVPLVVDVGVGHHW 458 >gi|238927513|ref|ZP_04659273.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531] gi|238884795|gb|EEQ48433.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531] Length = 874 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 91/632 (14%), Positives = 161/632 (25%), Gaps = 149/632 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVGEA 115 + L VT+ N+ + + + + + + A Sbjct: 373 ILACLAERSVTLW--NAK-------RYVQAGLQGTAQVFDLELADYLLHPEESRRDIARA 423 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + L + + Sbjct: 424 AFAFLGTATSAEGLSSEAYAVREALLGARLQPVM----------------ETELAAQGLM 467 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + + E L + + G VD A L +E+ +L + Sbjct: 468 QLYRTVELPLVPVLAAMEQTGVYVDRAALERERAAATERINALAREIHTLAG-AEFNISS 526 Query: 236 LEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF GL +T L + P V R ++ Sbjct: 527 PKQLGEILFEHLGLGSGKVKKTKTGYSTNAETLEGLRDQHPIIDNVLTYR-MWTKLRSTY 585 Query: 291 LNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 L+ + + GR+ + + TGR S QN+P + Sbjct: 586 LDGIGALIRPATGRVHTSFNQ-TVTATGRLSSSDPNLQNIPVRTEEGRA----------- 633 Query: 350 ITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 VR+ EG L+ AD + IE R+LA M+G+ + AF G+D+ Sbjct: 634 --------------VRALFTPGEGYDALLSADYSQIELRILAHMSGDATLIDAFRHGQDI 679 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + T A F V VT +QR K + GL+ Sbjct: 680 HARTAAEVFGVPLDAVTPEQRRRAKAVNF--------------GIVYGLSDFGL------ 719 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 A + + +++ V L + Sbjct: 720 ------------------------ARDLGIGRREAGGYIDRYFERYHGVRTF---LDKIV 752 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 NG GR + + + Sbjct: 753 ADAHTNGYVTTLY-----------------------GRRRALPALASRNYMQRSF---AE 786 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEF 642 R +Q + D++ M+ A A I+L VHDE+V E + Sbjct: 787 RMAMNTP------IQGTAADLIKIAMVRAYDALQAADVKSRILLQVHDELVMEVTAEETE 840 Query: 643 NASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 + L M+ A +PL + + K + Sbjct: 841 TVTELLRTAMSGAAELA--VPLAVDVHVGKNW 870 >gi|253584371|ref|ZP_04861569.1| DNA polymerase I [Fusobacterium varium ATCC 27725] gi|251834943|gb|EES63506.1| DNA polymerase I [Fusobacterium varium ATCC 27725] Length = 907 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 92/658 (13%), Positives = 187/658 (28%), Gaps = 135/658 (20%) Query: 32 LFAFGFDDHPVELWDCVHDPVM-----PQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 FA H P+ +KE N+D + +N K N Sbjct: 365 GFAVSSLKDD-FYIPLGHTPLFHKNLDLDKVKEFFRNSDSIFITYN-------FKPLLNE 416 Query: 87 DIPIHRWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 I I ++ A + V + L + +F K + Sbjct: 417 GIKIKNMDMDLMI-AYHLISSQTKEGV--EIPLEQLSGIDIAPYSEKFGKEAPGNLSTEE 473 Query: 146 NKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 E + + Y + + LE L E L + + +G +D Sbjct: 474 YGKFLVERSKGIMETYGIAMEEIKGK--NLLEVLKETEMPLIKVLSAMERKGIKIDPVYF 531 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + +++ L +++ + + ++L LF + L T+ +T + Sbjct: 532 AKYEKELEILLNNLQKKIFEIAG-EEFNLNSPKQLAEVLFFKLNLDPVKKTKTGLSTDEE 590 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL K + + ++ ++ L + +S RL T +G + TGR S Sbjct: 591 VLEKLKNDGVEIASYILEYRKYAKLKNTYVDALPKLADSRDRLHTTFNQIGTT-TGRLSS 649 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 QN+P + + +R IA G L+ D Sbjct: 650 SNPNLQNIPVKTDEGMK-------------------------IRQGFIADNGNVLMGIDY 684 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE RVLA ++ ++ + A++ EDL+ T + F Sbjct: 685 SQIELRVLAELSKDENLIAAYKNNEDLHRVTAKKIF------------------------ 720 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 + + NF + + E Sbjct: 721 -------------------ELEDGEEVSREQRIIAKTINFSIIYGKTAFGLSKELGITQK 761 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 + +++ +V + + E+ N Sbjct: 762 EATDYINRYFEQYPKVKDFEKSIIAYAEK--------------------------NGYTE 795 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---- 617 GR + + + Q R +++Q + +IL + M+ Sbjct: 796 TYFGRRRIIEGILSKN---KNIKNQAERMA------VNSVIQGTAAEILKKVMIEIFKVI 846 Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 K ++L VHDE++ E + + ++M ++ + + L K + Sbjct: 847 ENKEDISLLLQVHDELIFEIKEEKVEEYRTTIENIMRNSVKF-DDVVLDINTNIGKNW 903 >gi|291280339|ref|YP_003497174.1| DNA polymerase I [Deferribacter desulfuricans SSM1] gi|290755041|dbj|BAI81418.1| DNA polymerase I [Deferribacter desulfuricans SSM1] Length = 789 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 74/508 (14%), Positives = 153/508 (30%), Gaps = 123/508 (24%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E + + + G ++ + +N ++ ++++++ + ++L Sbjct: 388 EIELPVIDILFEMEKHGIKINEKKVYEINDELEENLKEIERKIFD-YCKEEFNLNSPKQL 446 Query: 240 KTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN---RMRASRSAVLKLNT 293 LF + GL T+ +T + L K P +++ + S+ Sbjct: 447 SFILFEKLGLEPAKKTKTGFSTSEEALQELKFKNPGHVELIDYILKYRELSKLKSTYTLN 506 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L+ M D R+ T + G + TGR S QN+P S + Sbjct: 507 LLNYMADDKRIHTTFKQTG-TATGRISSINPNLQNIPVGSIYGKR--------------- 550 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R C A +G + V D + IE R+LA ++ ++ + AF ED++ T Sbjct: 551 ----------IRECFEAEKGYRFVSFDYSQIELRILASLSNDENLIDAFINDEDIHNKTA 600 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 F V +V R + K + GL+ Sbjct: 601 KEIFGV--EEVDPKHRRLAKAVNF--------------GIIYGLSP-------------- 630 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 A + + + + + + V + + + ++ Sbjct: 631 ----------------YGLARDTGITQSEAKVFIERYFNLYPGVKNYIDSIIKEAKE--- 671 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 GR +D+ + L + R Sbjct: 672 -----------------------KGYTETILGRKRFIKDINSANRMLKQ---RAERIAIN 705 Query: 594 GGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFN-ASM 646 +Q + DI+ M+N K ++L +HDE++ E + + Sbjct: 706 AP------IQGSAADIIKLAMINIYKYLQKTQIDVKMILQIHDELLFEVKEDIVEDFVQE 759 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRYR 674 + M + +PLK K + Sbjct: 760 FKNRMENVIK--LKVPLKVNYSTGKNWG 785 >gi|323342141|ref|ZP_08082374.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464566|gb|EFY09759.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC 19414] Length = 833 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 73/496 (14%), Positives = 147/496 (29%), Gaps = 117/496 (23%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E+ L + RG VD ++ + + + L ++ L + + Sbjct: 442 YEEIEKPLVPILSKCEFRGINVDRSVLDEIALVTHQKIETLSNQVYELAGM-EFNLNSPK 500 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L LF L + +T VL + + R + + L + Sbjct: 501 QLAEVLFDHLKLPTKKKR-STAVDVLEGLIEEHAIIAPILEYR-KYQKLYSTYAVGLTKH 558 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 +++DG++ + A++TGR S QN+ Sbjct: 559 IHADGKIHTSFNQH-ATQTGRLSSSDPNLQNISVRDEETR-------------------- 597 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R +ASEG L+ D + IE RVL+++A E+ ++AF G D++ T F Sbjct: 598 -----MIRKAFVASEGCTLMSIDYSQIELRVLSYLADEKRMMEAFNGGHDIHSETAKAIF 652 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 V VT R K + + G++ + + Sbjct: 653 GV--DDVTSTMRRQAKSVNFGIV--------------YGMSEYGLSKQLDI--------- 687 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 + + + +++ + + E + +G Sbjct: 688 ---------------------TIPEARHFITRYNEIYPNITKYMDSV---VEDCLRDGYV 723 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 R ++ + + + R Sbjct: 724 KTLFN-----------------------RRRYIPEIYDANRAVKDFGK---RAAMNAP-- 755 Query: 598 TENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHL 650 +Q + DI+ M+ A + ++L VHDE+V + D + L + Sbjct: 756 ----IQGTAADIIKIAMIKADELLTSNNYKSSMILQVHDELVFDVYDDELEQIQDLMVSV 811 Query: 651 MTSNPSWAKGLPLKAE 666 M SW L + + Sbjct: 812 MEHIVSWPIDLNVSVD 827 >gi|332675191|gb|AEE72007.1| DNA polymerase I [Propionibacterium acnes 266] Length = 931 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 99/657 (15%), Positives = 182/657 (27%), Gaps = 135/657 (20%) Query: 34 AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 A D +D + + L + D V H++ L ++ Sbjct: 388 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAER-GWEVAG 446 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + + A K + + L Sbjct: 447 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 499 Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 R DV E E L E + ++ G VD + L Sbjct: 500 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 559 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266 D T+ QE G + ++L+ LF + + T++ T L+ Sbjct: 560 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 618 Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + P + +R ++ L++ + DGR+ T A TGR S Sbjct: 619 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 675 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383 QN+P + +R + EG + L+ AD + Sbjct: 676 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 710 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q + AF++G+D + T + F VAP V+ QR+ K M Sbjct: 711 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 765 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 GL+ + + Sbjct: 766 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 786 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + + +V E L + +Q G Sbjct: 787 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 821 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622 GR D+ + R +Q + D++ M+ + Sbjct: 822 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 871 Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E +E + + M +PL + + Sbjct: 872 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 926 >gi|295102397|emb|CBK99942.1| DNA polymerase I [Faecalibacterium prausnitzii L2-6] Length = 861 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 103/657 (15%), Positives = 193/657 (29%), Gaps = 166/657 (25%) Query: 35 FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI-VAHNSYFERTVLKACFNLDIPIHRW 93 + D V + + L L+N DVT+ V F+ L + + W Sbjct: 349 YAVQDKTV--FPLES-----EDLLRLLDNKDVTLDV-----FDSAPL---YARAMAAGGW 393 Query: 94 -----ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 + A ++ K + +I+ + Sbjct: 394 GSSIVWDGKLAAYLLDASAS-------------KYNLSELIISYRA-----------DAA 429 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHT 206 E W G + EI E + E + + G VD Sbjct: 430 FTCEKWPDAGALADLFAKMKTEITALEEDSLYNDIEFPLAQVLADMTRIGILVDKEGIEK 489 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ETTCQRVL 263 + E + + T + ++L LF GL T +T L Sbjct: 490 FGVKMRSELEDVLTRIHMETGSASFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETL 549 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + + P + R + + L++ + DGR+ A RTGR S Sbjct: 550 EALRD-YPLVEDILQYR-AYQKLNSTYVEGLLKVIAEDGRIHTRFNQTEA-RTGRLSSDN 606 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+P + + +R+ +A G LV AD + Sbjct: 607 PNLQNIPIRTE-------------------------LGSQLRAYFVARPGCVLVDADYSQ 641 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+LA + G++ +AF TGED++ +T A+ + + QVT R+ K + Sbjct: 642 IELRILAHVTGDEHMQQAFLTGEDIHRSTAAKIYGLPLEQVTPRLRSSAKAIN------- 694 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G + + + Sbjct: 695 -------FGIMYG------------------------------KGAYSLSKDIGVSVKEA 717 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + K + +VS ++ + Sbjct: 718 DAFLKNYLATFPKVSGYMDKTISDARSC--------------------------GYVSTL 751 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------ 617 GR ++ +N + + ++ R +Q + D++ M+ Sbjct: 752 FGRRRSLPELASNNHNIRASGERMAR---------NTPIQGTAADVIKLAMVRVWRRLRD 802 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 K ++LTVHDE++ E P+ + A+ + M ++A +PL E ++ K + Sbjct: 803 EKMESRLILTVHDELIVEAPEAEAAKAAAILQEEMEGCVNYA--VPLSTEVHQGKNW 857 >gi|157693309|ref|YP_001487771.1| DNA polymerase I [Bacillus pumilus SAFR-032] gi|157682067|gb|ABV63211.1| DNA-directed DNA polymerase I [Bacillus pumilus SAFR-032] Length = 879 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 80/655 (12%), Positives = 175/655 (26%), Gaps = 127/655 (19%) Query: 32 LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 L F + + D + + KE +++ +S L+ D+ + Sbjct: 335 LIGFAIHNENGAFFMTKEDALQSEAFKEWVQDETKKKWVFDSKRAVVALRWH---DVDLK 391 Query: 92 RWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN-KPN 149 L+ + + V K + + E + P Sbjct: 392 GVDNDVLLASYVVNPQKTYEDVASVAK---------EYGLNIALSDEKVYGKGAKQAIPP 442 Query: 150 HREAWRLFGEYCKGDV---TVTREIFKRLEPLS---SKEQELWYLDQTINDRGYCVDVAL 203 E G +T E ++ + E L + + G VD+ Sbjct: 443 EDELKEHLGRKAAAISALHDLTLEALEKNDQHELYEDLELPLALILGEMESLGVKVDIKR 502 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260 + + + + + ++ + L + ++L LF + GL + T+ +T Sbjct: 503 LENMGEELTKKLKEYEETIHRLAG-ETFNINSPKQLGVILFEKLGLPIIKKTKTGYSTSA 561 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL + + + R + + L++ D T ++TGR S Sbjct: 562 DVLEKLEDKHEIIRSILHYRQ-IGKLQSTYVEGLMKVTRKDTHKVHTRFNQALTQTGRLS 620 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVA 379 QN+P + +R + EG + A Sbjct: 621 STDPNLQNIPIRLEEGRK-------------------------IRQAFVPSKEGWLMFAA 655 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA ++ ++ ++AF D++ T F+V+ +VT R K + + Sbjct: 656 DYSQIELRVLAHISQDENLIEAFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGI 715 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y + L + ++ + + + + + + Sbjct: 716 VYGIS-----DYGLSQNLGITRKEAAAFIERYLTSFKGVKTYMEEIVQEAKQKGYVTTLL 770 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 R ++ + + T G A K+ + Sbjct: 771 KR--RRYIPDITSRNFNIKSF---AERTAMNTPIQGSAADIIKKAMID------------ 813 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 R L + N ++ Sbjct: 814 ----MARRLKEEKLQTNL------------------------------------LLQVHD 833 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ E P + + +M + +PLK + + Sbjct: 834 E-----------LIFEAPKEEIAILEKIVPEVMENALQ--LDVPLKVDFASGPSW 875 >gi|312898329|ref|ZP_07757719.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] gi|310620248|gb|EFQ03818.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] Length = 857 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 99/654 (15%), Positives = 185/654 (28%), Gaps = 137/654 (20%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFN 85 + + V ALE+++V + A + L KA Sbjct: 330 HSKISTLTLAVEGG-VYEV----KSEDIGQWLTALEDSEVVVTA-----DGKSLYKAALC 379 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 I + A A L+ G+ L +E + Sbjct: 380 AGIGDLPVYDVTLAAYLLDPTR------TAYGLTYLSEVFGRTL---------NEVKGEA 424 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 EA ++ Y G V E + E L + G+ V+ Sbjct: 425 QNETANEAAFVYSLY--GPVQQALEEKGLSSLFETIESPLERTLAVMELNGFTVNRDRLE 482 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262 + + E L+ E+ L + ++L LF + GL + T+ +T V Sbjct: 483 EMKADLSREADALETEIYDLAG-ESFNINSTKQLGVILFEKMGLPVIKKTKTGYSTDSSV 541 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSG 321 L + + ++ R + L+ L ++ R+ + + + TGR S Sbjct: 542 LEELAEQSEIVPKILKFR-ALKKLISTYLDGLEPLIDEKTERVYTSFNQMV-TATGRLSS 599 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVAD 380 QN+P + + +RS + EG LV D Sbjct: 600 SDPNLQNIPIRTEQGRK-------------------------IRSFFVPGEGYDYLVSGD 634 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA ++ + + F+ +D++ T + F V +VT + R+ K + + Sbjct: 635 YSQIELRLLAHLSQDPTMIDGFKHNQDIHRRTASEVFGVPFDEVTGELRSHAKAVNFGII 694 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + S + ++ + E Sbjct: 695 YGIS-----DFGLSRNLGITRNRAKEYIESYFARYSTIHDYMNGLVEEARRTGESRTMF- 748 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + R +P + K Sbjct: 749 ----------------------------------------GRLRTLPEISSKNFMRRSF- 767 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT + KL N VQ +N Sbjct: 768 --------------AERTAMNTPIQG---SAADIIKLAMNAVQ------KKLEALNLH-- 802 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++ VHDE+V E P ++ L M + +PL A+ + + Sbjct: 803 -SRMLVQVHDELVLEVPAQEKETIEKLLKETMEEVVT--LSVPLIADIHTGTNW 853 >gi|194017403|ref|ZP_03056015.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061] gi|194011271|gb|EDW20841.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061] Length = 879 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 80/655 (12%), Positives = 176/655 (26%), Gaps = 127/655 (19%) Query: 32 LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 L F + + D + KE +++ +S L+ D+ + Sbjct: 335 LIGFAIHNENGAFFMTKEDALQSDAFKEWVQDETKKKWVFDSKRAVVALRWH---DVDLK 391 Query: 92 RWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN-KPN 149 L+ + + + V K + + E + P Sbjct: 392 GVDNDVLLASYVVNPQKSYEDVASVAK---------EYGLNIALSDEKVYGKGAKQAIPP 442 Query: 150 HREAWRLFGEYCKGDV---TVTREIFKRLEPLS---SKEQELWYLDQTINDRGYCVDVAL 203 E G +T E ++ + E L + + G VD+ Sbjct: 443 EDELKGHLGRKAAAISALHDLTLEALEKNDQHELYEDLELPLALILGEMESLGVKVDLKR 502 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260 + + + + + ++ + L + ++L LF + GL + T+ +T Sbjct: 503 LEKMGEELTKKLKEYEETIHRLAG-ETFNINSPKQLGVILFEKLGLPIIKKTKTGYSTSA 561 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL + + + R + + L++ D T ++TGR S Sbjct: 562 DVLEKLEDKHEIIRSILHYRQ-IGKLQSTYVEGLMKVTRKDTHKVHTRFNQALTQTGRLS 620 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVA 379 QN+P + +R + EG + A Sbjct: 621 STDPNLQNIPIRLEEGRK-------------------------IRQAFVPSKEGWLMFAA 655 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA ++ ++ ++AF D++ T F+V+ +VT R K + + Sbjct: 656 DYSQIELRVLAHISQDENLIEAFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGI 715 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y + L + ++ + + + + + + Sbjct: 716 VYGIS-----DYGLSQNLGITRKEAAAFIERYLTSFKGVKTYMEEIVQEAKQKGYVTTLL 770 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 R ++ + + T G A K+ + Sbjct: 771 KR--RRYIPDITSRNFNIKSF---AERTAMNTPIQGSAADIIKKAMID------------ 813 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 R L ++ N ++ Sbjct: 814 ----MARRLKEENLQTNL------------------------------------LLQVHD 833 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ E P + + +M + +PLK + + Sbjct: 834 E-----------LIFEAPKEEIAILEKIVPEVMENALQ--LDVPLKVDFASGPSW 875 >gi|242373981|ref|ZP_04819555.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1] gi|242348335|gb|EES39937.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1] Length = 891 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 95/685 (13%), Positives = 192/685 (28%), Gaps = 127/685 (18%) Query: 5 FIDFETR----SPIDLTKCGICKYAEDVC-----VILFAFGFDDHPVELWDCVHDPVMPQ 55 D ET +L+ I ED ++ F DD + D Sbjct: 314 TFDVETDFQHIDFKNLSHATIHFELEDTNYLKDNILKFGLYTDD--THIVINAEDIKQHS 371 Query: 56 VLKEALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 L E LE+ +++ + V +++I + ++ + A+ V Sbjct: 372 DLIEWLEDAQTVKTVYDAKKTY---VAAHRLDINIQNVQ-FDVMLASYIIDPSRAIDDVK 427 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 +S K+ ++ + KG+ H D H + K + + + Sbjct: 428 SV--VSLYGQNYVKDNVSIYGKGKKHHIPEDNILNEHVASITEAIASAKPLMEEQLKEYN 485 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 ++E L+ E L + + + G DV + + + L + + + Sbjct: 486 QVELLADLELPLAKILSEMEEIGIYTDVNDLKHMENEIQEKLDVLIKNIHEAAG-EEFNI 544 Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF L + T+ +T VL K P + R S+ Sbjct: 545 NSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVLEQLKGEHPIIEHILEYRQ-LSKLQSTY 603 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L + ++ D R+ A +TGR S QN+P + Sbjct: 604 VEGLQKVISKDNRIHTRFNQTLA-QTGRLSSVDPNLQNIPIRLEEGRK------------ 650 Query: 351 TSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R SE ++ AD + IE RVLA + ++ +AF G D++ Sbjct: 651 -------------IRKAFKPTSEDSVILSADYSQIELRVLAHITQDESLKEAFIHGHDIH 697 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + FNV V R K + + Y + L + + Sbjct: 698 TATAMKVFNVEANDVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFID 752 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + + + ++ + + R ++ + + Sbjct: 753 DYLASFPGVKQYMSDIVKDAKAQGYVETLLHR--RRYIPDITSRNFNLRSF---AERTAM 807 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 T G A L N + Sbjct: 808 NTPIQGSAADII-------------------------KLAMVKFNEKVKNTNYHAKL--- 839 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM-LY 648 ++ ++ E P ++ + S + Sbjct: 840 ------------------------LLQVHDE-----------LIFELPKSEVEDFSEFVE 864 Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673 +M + +PLK + + Sbjct: 865 EIMENALD--LDVPLKVDSSYGPTW 887 >gi|289705501|ref|ZP_06501893.1| DNA-directed DNA polymerase [Micrococcus luteus SK58] gi|289557730|gb|EFD51029.1| DNA-directed DNA polymerase [Micrococcus luteus SK58] Length = 937 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 102/678 (15%), Positives = 192/678 (28%), Gaps = 145/678 (21%) Query: 31 ILFAFGFDDHPVELWDC---VHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNL 86 + A +H DP + +++AL + H+ L Sbjct: 365 VGVAL-VGEHAGLHVSLDGDTPDPALVAAVRDALGEGGLAKAVHDLKRTLKALTAPTEGD 423 Query: 87 DIPI-----HRWICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGET 138 + L+ A +L+A+ EA + + Sbjct: 424 GLGPDAALDGVVDDVLLSAYLIQPDRRDTSLEALAEAHLHTPLTAPREPAQQRAQGTFDL 483 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTV-TREIFKRLEPLSSKEQELWY--LDQTINDR 195 + + T T ++ R +E E+ L + Sbjct: 484 DGGQAAAERAARAADAVRAAWVVRRLSTQFTPQVLDRGAQRLLQELEIPLSRLLARMELT 543 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELE----SLTYGLVSSSRCLEKLKTWLFLETGLHL 251 G VDV L + + T G+ + ++L+ LF + Sbjct: 544 GIAVDVDALTGLREDFTAAADAAKESAWASVAEETGGMQVNLGSPKQLQEVLFERLNMPR 603 Query: 252 EDLTE---TTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T+ +T L + P + +R A++ + L+E + DGR+ Sbjct: 604 TRKTKTGYSTDVDSLQDLLEQTQHPFLENLMAHR-DATKLRQT-VEGLLETVAPDGRIHT 661 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 T A+ TGR S QN+P + + +R Sbjct: 662 TYSQ-TAAATGRLSSLHPNLQNIPVRTEAGRR-------------------------IRG 695 Query: 367 CVIASE--GK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +A E G+ L+ AD + IE R++A ++ ++ ++AF GEDL+ ++ F V P Sbjct: 696 VFVADEVAGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPD 755 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT +QRA K M L Y + L Sbjct: 756 EVTAEQRAKVKAMSYGLAYG-----LSSFGLSKQL------------------------- 785 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + K + + V + ++ Q Sbjct: 786 --------------KISVDEARGLMKGYFDRFGGVRDYLRDVVAQARQ------------ 819 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 + GR D+ ++ R + Sbjct: 820 --------------DGYTSTIEGRRRYLPDLSSDN---RQLRDMAERAALNAP------I 856 Query: 603 QAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNP 655 Q + DI+ M++ ++L VHDE++ E P + ++L M Sbjct: 857 QGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILEVPAAELEQSTALLKERMGRAA 916 Query: 656 SWAKGLPLKAEGYESKRY 673 +PL + + + Sbjct: 917 E--LSVPLDVHVGQGRSW 932 >gi|50954806|ref|YP_062094.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951288|gb|AAT88989.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] Length = 895 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 95/660 (14%), Positives = 189/660 (28%), Gaps = 140/660 (21%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 ++ F V L E L + ++ + L Sbjct: 357 PSLVGFGLASATETV-YVPWEDGSHHGAALTEWLASPAR-KCFFHAKPQFKTLLRA-GFA 413 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + T + + SA +++ E G+ L + Sbjct: 414 VDGLA-FDTRIASWLVKPGSAPQSLAE-----QVWEVLGETL------PVSDPNQLVPLA 461 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-SKEQELWYLDQTINDRGYCVDVALAHT 206 A + D T + +R + E L + + G +D Sbjct: 462 DAVSPATEAWFVRRVADGQAT-ALDERTRAVLDEIELPLVAVLAEMELNGVAIDAVALTR 520 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263 L + + + L + + + ++L+ LF E G+ T+ +T L Sbjct: 521 LRDRLTGKASDLAARAYAEIGHEI-NLGSPKQLQQVLFEELGMPKTRSTKTGYSTDAASL 579 Query: 264 SSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 + ++ P + +R + + TL ++ DGR+ T G + TGR S Sbjct: 580 ADLQEKSPHPFLGLLLQHRDATKLKQI--VETLERSVTGDGRIHTTYDQTG-TSTGRISS 636 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVAD 380 QN+P + E +RS ++ E + L+ AD Sbjct: 637 NDPNLQNIPIRTEEGRE-------------------------IRSSFVSGGEDETLLTAD 671 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R++A ++ + ++AF GEDL+ +R F V P +VT R K M L Sbjct: 672 YSQIEMRIMAHLSDDPGLIEAFNAGEDLHRFVGSRVFGVPPEEVTPLMRTKVKAMSYGLA 731 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y GL+ + ++ ++ Sbjct: 732 Y--------------GLSAFGLSKQLRIETS----------------------------- 748 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + ++ V + + + + Sbjct: 749 -EARELMNGYFERFGAVRDYLRNVVEQAR--------------------------LDGFT 781 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA--- 617 GR + D+ + R+ +Q + DI+ M+ Sbjct: 782 ETIFGRRRPFADLTSTN---RVLRENAERQALNAP------IQGSAADIMKIAMLGIAGD 832 Query: 618 ---TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + G ++L VHDE++ E + + M +PL + + Sbjct: 833 MSDQRLGSRMLLQVHDELIFEVAPGEGDALETIVRARMVGAAD--LRVPLDVQIGRGSTW 890 >gi|313895591|ref|ZP_07829147.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975717|gb|EFR41176.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 642 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 104/717 (14%), Positives = 193/717 (26%), Gaps = 154/717 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAED---VCVILFAFGFDDHPVELWDCVH--DPVMPQ-- 55 + DFET D K A D ++ AF + H + + Sbjct: 24 IIAFDFET--APDEAYRAEEKAALDPARAHIVGCAFSASERTGIYVPVAHKIGANIDRTA 81 Query: 56 ---VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 L + L N +T VAHN FE + + + I T + A SA + Sbjct: 82 FFLFLADLLANPHITKVAHNIAFESS-MAYARGIVIQP-PVYDT-IAAAQMTSRSAYEF- 137 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 L S K G+ L E ++ + Y D + ++ Sbjct: 138 -RRLNESGLKHLAGELL--EESLPTFAETTGGKHFDELPAQDKETVRYGAADADFSLRLY 194 Query: 173 KRLEPLSSKEQELWYLDQT------------INDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + + + G +D +L ++E ++ Q Sbjct: 195 HTFNGWFDRYLPRHRWIVEHMESPTAIYLGVMKNNGVPIDQSLMQKRKAESEMEMERIRQ 254 Query: 221 ELESLTYGLVSSSR-CLEKLKTWLFLETGLHLED-LTETTCQ----------RVLSSNKK 268 E+ L + + K +LF GL + ++ +K Sbjct: 255 EITFLIGDVNIGANCSTADFKKYLFESQGLPVLKVTNKSQAALDDMAMVLLGEWCEEHKP 314 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 ++ R + ++ ++ +N + F ++ TGR + QN Sbjct: 315 ELVPLFKLVQEYRRWGKIQSTYIDGYLKFLNPVTKRLHPDIFALSTDTGRMNCRKPNCQN 374 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +PR S VR+ + A G ++ D + IE RV Sbjct: 375 MPRKSND-------------------------PIGVRNFIKAPSGHLILSLDFSQIELRV 409 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-------VTKDQRAIGKVMELALGY 441 A+ ++ ++ + G D++ T F V + K++R I K + Y Sbjct: 410 GAFYCRDERMMETYRAGGDIHAATTCVIFGVTDEEAQDKHRADYKERRTIAKNVNFGTFY 469 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 + Q Sbjct: 470 GLFPRGLQNTLK--------------------------------------FKAGVEKTLP 491 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 CE V + + +S E L Sbjct: 492 ECESVIANLKAGYRELSTWQEETKVQA--------------------------ARRLYSE 525 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---- 617 GR D+ + ++ R+ +Q + DIL ++ Sbjct: 526 TWLGRRRYLPDIRS---------KEWARKSFAERCALNTPIQGTAADILKLAIVRILKGL 576 Query: 618 -TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672 + +L +HDE+ P + + + M P LPL A+ + Sbjct: 577 PDRPWLKPILQIHDELTFIIPAGRLDEAVAFIRACMEEQPFPEFDLPLIAKASAGEN 633 >gi|289426864|ref|ZP_06428590.1| DNA-directed DNA polymerase [Propionibacterium acnes J165] gi|295130349|ref|YP_003581012.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137] gi|289159953|gb|EFD08131.1| DNA-directed DNA polymerase [Propionibacterium acnes J165] gi|291376122|gb|ADD99976.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137] Length = 910 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 99/657 (15%), Positives = 182/657 (27%), Gaps = 135/657 (20%) Query: 34 AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 A D +D + + L + D V H++ L ++ Sbjct: 367 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAER-GWEVAG 425 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + + A K + + L Sbjct: 426 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 478 Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 R DV E E L E + ++ G VD + L Sbjct: 479 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 538 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266 D T+ QE G + ++L+ LF + + T++ T L+ Sbjct: 539 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 597 Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + P + +R ++ L++ + DGR+ T A TGR S Sbjct: 598 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 654 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383 QN+P + +R + EG + L+ AD + Sbjct: 655 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 689 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q + AF++G+D + T + F VAP V+ QR+ K M Sbjct: 690 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 744 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 GL+ + + Sbjct: 745 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 765 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + + +V E L + +Q G Sbjct: 766 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 800 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622 GR D+ + R +Q + D++ M+ + Sbjct: 801 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 850 Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E +E + + M +PL + + Sbjct: 851 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 905 >gi|289426253|ref|ZP_06427999.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187] gi|289153418|gb|EFD02133.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187] Length = 915 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 99/657 (15%), Positives = 182/657 (27%), Gaps = 135/657 (20%) Query: 34 AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 A D +D + + L + D V H++ L ++ Sbjct: 372 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAER-GWEVAG 430 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + + A K + + L Sbjct: 431 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 483 Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 R DV E E L E + ++ G VD + L Sbjct: 484 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 543 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266 D T+ QE G + ++L+ LF + + T++ T L+ Sbjct: 544 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 602 Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + P + +R ++ L++ + DGR+ T A TGR S Sbjct: 603 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 659 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383 QN+P + +R + EG + L+ AD + Sbjct: 660 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 694 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q + AF++G+D + T + F VAP V+ QR+ K M Sbjct: 695 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 749 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 GL+ + + Sbjct: 750 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 770 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + + +V E L + +Q G Sbjct: 771 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 805 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622 GR D+ + R +Q + D++ M+ + Sbjct: 806 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 855 Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E +E + + M +PL + + Sbjct: 856 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 910 >gi|320011379|gb|ADW06229.1| DNA polymerase I [Streptomyces flavogriseus ATCC 33331] Length = 903 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 96/643 (14%), Positives = 176/643 (27%), Gaps = 143/643 (22%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARSNGLP 106 Q L L + V HN+ VL + + T + A Sbjct: 379 EADEQALAAWLADPGQPKVLHNAKNALRVLPEQGWRLEGISM------DTALAAYLVKPG 432 Query: 107 S---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 AL A+ E L +A + F K Sbjct: 433 RRSFALDALAVEYLGRELAPAPASDGQLAFGADDRAEADALMAQARAVLDLGDAFTTRLK 492 Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 V T ++ E + + G D A ++ Q + +E Sbjct: 493 E-VGATELLY-------DMELPTSIMLARLERHGIAADRAHLESMEQQFAGAVQQAVKEA 544 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK----KLTPQAIQVFN 278 + + ++L+ LF E L T+T + + + + Sbjct: 545 HAAVG-REFNLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLAAQTEHELPVIML 603 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 ++ V + L++ + +DGR+ T A+ TGR S QN+P + Sbjct: 604 RHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEGRA 661 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQW 397 +R + EG L+ AD + IE RV+A ++ + Sbjct: 662 -------------------------IRRGFVVGEGFETLMTADYSQIELRVMAHLSEDAG 696 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF +GEDL+ T ++ F V + V + R K M L GL Sbjct: 697 LIEAFTSGEDLHTTVASQVFGVEKSAVDAEMRRKIKAMSYGL--------------AYGL 742 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + + + + + + V Sbjct: 743 SAFGLSQQLNIEAG------------------------------EARGLMDTYFLRFGGV 772 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + + + T GR D+ ++ Sbjct: 773 RDYLHRVVEEARST--------------------------GYTETILGRRRYLPDLNSDN 806 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDE 631 R +Q + DI+ M+ +A ++L VHDE Sbjct: 807 ---RQRREAAERMALNAP------IQGTAADIVKVAMLKVDRALTEAELTSRMLLQVHDE 857 Query: 632 IVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 IV E + + M++ PL + + Sbjct: 858 IVLEIAKGEREQVEEILRREMSTAVE--LRAPLDVSVGVGRDW 898 >gi|301116858|ref|XP_002906157.1| DNA polymerase I, putative [Phytophthora infestans T30-4] gi|262107506|gb|EEY65558.1| DNA polymerase I, putative [Phytophthora infestans T30-4] Length = 1054 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 113/797 (14%), Positives = 213/797 (26%), Gaps = 211/797 (26%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFA------FGFDDHPVELWD-CVHDPVMPQVL 57 D E + ID+ G + V + + + P D Q+ Sbjct: 341 ACDTE-VAQIDVKAVGP---VGNGVVTCLSLYSGPDVDYGNGPYVWVDNLDSAEGTLQLF 396 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG------LPSALKA 111 KE LE+ + V HN F+R VL +++ T+ +AR +L++ Sbjct: 397 KEFLESKNYLKVWHNYSFDRHVLFNH-GINVQGLG-GDTMHMARLWNTARFQNGGYSLES 454 Query: 112 VGEALKLSSQK-MEEGK---ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 + L L +K M+E +L KG+ E + + Y D Sbjct: 455 LTADLLLQRKKPMKELFGIPKLKKDGSKGKERIMPTVEELQRFPEFRKRWIRYSVYDAES 514 Query: 168 TREIFKRLEPLSSKEQ------------------------ELWYLDQTINDRGYCVDVAL 203 T + + L+ + I RG VD+ Sbjct: 515 TWFLHRVLQDKLDQTFWFEKPNGGESQVGSMYEFYREYIVPFGECLTDIERRGMHVDLEY 574 Query: 204 AHTLNQIVDVERTKLDQEL-----ESLTYGLVSSSRCLEKLKTWLFLET----------- 247 + + +R +L++ + + + + LF Sbjct: 575 LAGVEKQALEDRARLEKLVLQWASRYCEESERINLYSAAQKQQLLFAPYFNKKKKEQVLP 634 Query: 248 --------------------------------GLHLEDLTET----TCQRVLSSNKKLTP 271 G+ T + VL P Sbjct: 635 AERSFEVENTEGFIEEGKQKAKKKRNITIRGLGIPPTHFTASGLPAASAEVLKDLAG-HP 693 Query: 272 QAI------------------------QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 +A + + + + L E +S+ R+ + Sbjct: 694 EANPPQYGRAYGHFEDKEEGAAACVALKALFDISSINTMLNNFILPLQELADSNSRVHCS 753 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 L + TGR S QN P + +R Sbjct: 754 LNLN--TDTGRLSSRKPNLQNQPAMGKD-------------------------RYKIRDA 786 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 A GKKL+VAD + +E R++A + + ++AF+ G D + T + Sbjct: 787 FTAPPGKKLIVADYSQLELRLMAHITQCKAMIEAFKAGGDFHSRTAMGMY---------- 836 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 + K +E +A + TTG L + NF + Sbjct: 837 -PYVAKAVENG-------EALLEWDHTTG-KEPPAPLLKDKYGDERKNAKVLNFSIAYGK 887 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 A + + W V + + + Sbjct: 888 TAFGLAKDFNVSRKEAADTLEKWYSDRGEVRDWQKKAIETART----------------- 930 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 GR D + ++ R +Q Sbjct: 931 ---------FGYTRTLLGRYRRLPDAMLRDDSMTSKKARGHAERAAINTP------IQGA 975 Query: 606 SRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA 658 + D++ + M+ + G+ +V +HDEI+ E P+ + ++ HLM + Sbjct: 976 AADVVMQAMLQVHHSPRLRELGWGMVSQIHDEIIVEGPEESVDEAMKLVVHLMENPFQKP 1035 Query: 659 KGLPLKAEGYESKRYRK 675 + L+ + + K Sbjct: 1036 LSVALEVDANVDDSWFK 1052 >gi|313809768|gb|EFS47489.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1] Length = 892 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 99/657 (15%), Positives = 182/657 (27%), Gaps = 135/657 (20%) Query: 34 AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 A D +D + + L + D V H++ L ++ Sbjct: 349 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAER-GWEVAG 407 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + + A K + + L Sbjct: 408 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 460 Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 R DV E E L E + ++ G VD + L Sbjct: 461 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266 D T+ QE G + ++L+ LF + + T++ T L+ Sbjct: 521 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579 Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + P + +R ++ L++ + DGR+ T A TGR S Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 636 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383 QN+P + +R + EG + L+ AD + Sbjct: 637 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 671 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q + AF++G+D + T + F VAP V+ QR+ K M Sbjct: 672 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 726 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 GL+ + + Sbjct: 727 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 747 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + + +V E L + +Q G Sbjct: 748 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 782 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622 GR D+ + R +Q + D++ M+ + Sbjct: 783 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 832 Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E +E + + M +PL + + Sbjct: 833 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 887 >gi|182682934|ref|YP_001837058.1| DNA polymerase [Enterobacteria phage EPS7] gi|182630646|gb|ACB97578.1| DNA polymerase [Enterobacteria phage EPS7] Length = 855 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 87/696 (12%), Positives = 178/696 (25%), Gaps = 157/696 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALE 62 + D ET YA D ++ + ++ D V L++ L+ Sbjct: 161 IAFDSETS----------ALYARDGYLLGVSMSHQEYQGVYIDSDSITEVAVHYLQKILD 210 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDI----PIHRWICTLVLARSNGL---PSALKAVGEA 115 + + IV HN F+ L R T++ LK++ Sbjct: 211 SKNHQIVFHNLKFDMHFYSYHLGLSFEKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 270 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 E + +CK + + + Y D T + Sbjct: 271 YTDMGDYDFELDKFKEDYCKAHKI---KKEDFSYDLIPFDIMWPYAAKDTDATLRLHNFF 327 Query: 176 EPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE- 223 P K Q + DRG + V + K ++L Sbjct: 328 LPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISVDRLKEAQYQLTHNLNKAREKLYT 387 Query: 224 -------SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTP 271 + +++L+ LF GL ++T L+ P Sbjct: 388 YPEVVQLEKDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTNAEALNELATQHP 447 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 A + R + ++ + ++ ++++DG +R + S Q LPR Sbjct: 448 IAKTLLEIR-KLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQLPR 506 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 ++ CV+A G +++ DL E A Sbjct: 507 D----------------------------ESIIKGCVVAPPGYRVIAWDLTTAEVYYAAV 538 Query: 392 MAGEQWKLKAFETGEDLYVTTYA------------RSFNVAPAQVTKDQRAIGKVMELAL 439 ++G++ + F ++ ++ R K + + Sbjct: 539 LSGDRNMQQVFINMKNEPDKYPDFHSNIAHMVFKLTCEPRDVKKLFPALRQAAKAITFGI 598 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y G +N KT E Sbjct: 599 LYGSGPAKVAH-----SVNEALLEQAAKTGEPFVE-----------------------CT 630 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + + + ++ ++ H + Sbjct: 631 VADAKDYIETYFGQFPQLKRWIDKCHDQIKN--------------------------FGF 664 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + GR ++ + + + I+Q+ S D L G ++A + Sbjct: 665 IYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAIDADE 715 Query: 620 --------AGYDIVLTVHDEIVCETPDTDEFNASML 647 IV+ VHD +V + + + Sbjct: 716 EILSLGLGKEMKIVMLVHDSVVAIVREDLIDQYNEI 751 >gi|313791768|gb|EFS39879.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1] gi|313802145|gb|EFS43377.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2] gi|313838477|gb|EFS76191.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1] gi|314963066|gb|EFT07166.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1] gi|315077530|gb|EFT49588.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2] gi|315080314|gb|EFT52290.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1] gi|327452882|gb|EGE99536.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1] Length = 892 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 99/657 (15%), Positives = 182/657 (27%), Gaps = 135/657 (20%) Query: 34 AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 A D +D + + L + D V H++ L ++ Sbjct: 349 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAER-GWEVAG 407 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + + A K + + L Sbjct: 408 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 460 Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 R DV E E L E + ++ G VD + L Sbjct: 461 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266 D T+ QE G + ++L+ LF + + T++ T L+ Sbjct: 521 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579 Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + P + +R ++ L++ + DGR+ T A TGR S Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 636 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383 QN+P + +R + EG + L+ AD + Sbjct: 637 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 671 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q + AF++G+D + T + F VAP V+ QR+ K M Sbjct: 672 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 726 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 GL+ + + Sbjct: 727 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 747 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + + +V E L + +Q G Sbjct: 748 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 782 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622 GR D+ + R +Q + D++ M+ + Sbjct: 783 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 832 Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E +E + + M +PL + + Sbjct: 833 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 887 >gi|51473944|ref|YP_067701.1| DNA polymerase I [Rickettsia typhi str. Wilmington] gi|81550503|sp|Q9RLA0|DPO1_RICTY RecName: Full=DNA polymerase I; Short=POL I gi|5912311|emb|CAB56108.1| DNA polymerase I [Rickettsia typhi] gi|51460256|gb|AAU04219.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str. Wilmington] Length = 872 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 87/633 (13%), Positives = 185/633 (29%), Gaps = 155/633 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-GEA 115 + L N + + ++ +LK N I ++ + K + E Sbjct: 377 ILNLLTNKSIKKITYSLK---HLLKFYANQSHKITAIEDLELMQYTLSAGLVQKNLFAET 433 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L + E K +I + +NK +++ Sbjct: 434 LTKDNIINESAKIVINFISLYKQTLLALQKNKAF--------------------RLYR-- 471 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + ++ + G VD H L+ E K+++E+ +L+ + Sbjct: 472 ----EIDLPTCFILDKMEKIGIKVDANYLHQLSDEFGTEILKIEEEIFALSGTK-FNIAS 526 Query: 236 LEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF + L + + +T +L + + + ++ Sbjct: 527 QKQLSEILFKKMQLPSGNTLAKTSSYSTKAGILKKLSEDGYHIATLLLRWRQLTKLKNTY 586 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++L + +N+ + T ++ TGR S QN+P S + Sbjct: 587 TDSLPKQINNITKRIHTTFLQTSTTTGRLSSQEPNLQNIPTRSSDGNK------------ 634 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R IA +G KL+ AD + IE R+L+ +A +AF ED++ Sbjct: 635 -------------IRQAFIAEDGYKLISADYSQIELRILSHIANVDVLKQAFINKEDIHT 681 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + FN+ ++T + R K + G++ Sbjct: 682 QTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS------------ 715 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 A + K + ++ + E + Sbjct: 716 ------------------AFGLAKQLNVSNGTAAEYIKQYFAEYKGMQEYMVQTKAYA-- 755 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 N + GR + + + + R Sbjct: 756 ------------------------NRNGYVTNFFGRKCFIPLIHDKK-----LKQFAERA 786 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA 644 +Q S DI+ M+ K ++L +HDE++ E P+ + Sbjct: 787 AINAP------IQGTSADIIKIAMIKLAQEIEKRKLKTRLILQIHDELLFEVPEIELELV 840 Query: 645 -SMLYHLMT--SNPSWAKGLPLKAEGYESKRYR 674 ++ +M +N +P+ E ++ Sbjct: 841 IPIIKKIMEYSTNI----DVPIITEIRAGNNWK 869 >gi|156102292|ref|XP_001616839.1| POM1 [Plasmodium vivax SaI-1] gi|148805713|gb|EDL47112.1| POM1, putative [Plasmodium vivax] Length = 1860 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 88/657 (13%), Positives = 178/657 (27%), Gaps = 143/657 (21%) Query: 10 TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLKEALENTDVT 67 T +D+ G+ + D + L +D+PV ++D + + L+E L+N V Sbjct: 1309 THCGLDIETTGLEVF--DEKIRLIQIAVEDYPVIIYDMFNITKESILTGLREVLKNEKVV 1366 Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA------VGEALKLSSQ 121 + N F+ L + T + ++ + V + L ++ Sbjct: 1367 KIIQNGKFDAKFLMHN---KFEVANIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVTLD 1423 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 K ++ + + +L E C+ ++ ++ Sbjct: 1424 KQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICRENMGT----------VNDI 1473 Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E + + G VD+ + E + +L++ + +++ Sbjct: 1474 ENKCILPICDMELNGITVDLESLSKSTNEILSELNEETSKLKAELKDEEINVNSQQQVLK 1533 Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 L + + + N + + + N R + L + +N Sbjct: 1534 ALQNKNVRDVSNKLIENTSDSNLKNFLNHREVVLLRNYRR-LYKLYSAFYLKLPQHINKK 1592 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 T + +GR+S Q +PR Sbjct: 1593 TNKIHTTFNQLKTFSGRFSSEKPNLQQIPR-----------------------------Q 1623 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R I + ++AD IE ++ A + + LKA+ DL+ T + A Sbjct: 1624 KNIREIFIPQKDNIFIIADFRQIELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKKAI 1683 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 A V K+ R I K + L Y + A+T Sbjct: 1684 ADVNKEDRHIAKAINFGLIYGMNYVNLKNYANTY-------------------------- 1717 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 C ++ + + + +Q + ++ Sbjct: 1718 ------------YNLNMNLDQCLYFYNSFFEHYKGIYRWH----NQIKQMRALEYSTLSN 1761 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 ++ P K Sbjct: 1762 RKVIFPYFSFT-------------------------------------------KALNYP 1778 Query: 602 VQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTS 653 VQ DIL ++ K I+L VHDEI+ E E +L M + Sbjct: 1779 VQGTCADILKLSLVELYKNLRPINGKIILCVHDEIIIEVDKKYQEDALKILVESMEN 1835 >gi|183601492|ref|ZP_02962862.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019] gi|219683966|ref|YP_002470349.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011] gi|241191008|ref|YP_002968402.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196414|ref|YP_002969969.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219098|gb|EDT89739.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019] gi|219621616|gb|ACL29773.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011] gi|240249400|gb|ACS46340.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250968|gb|ACS47907.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793997|gb|ADG33532.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis V9] Length = 960 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 106/659 (16%), Positives = 198/659 (30%), Gaps = 140/659 (21%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 D + D HD L+ L+ T+ H +L NL +P+ T + Sbjct: 415 DGHAVVVD-PHDEQYHMALQRILDTYAATLSVHGYKEHLHMLG-AVNLRLPMV-LFDTNL 471 Query: 99 LARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 +L+ + + E + DR + Sbjct: 472 AGYLIDPDFQGGSLQDCADHFLHRHAEEVTETEQGTLDIGMDDERAERDRKVVRNAAIVS 531 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 L + + L E + G VD A L ++ E Sbjct: 532 LLARTLARQLEQ----RCQYSLLRDIELPTSVALFHMEHTGASVDRARLDELLEMFTDES 587 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTP 271 +++Q V + + ++L LF E GL+ T+ +T + L++ + Sbjct: 588 NRMEQICYEAAGHEV-NLQSPKQLGVVLFEEMGLNPTKKTKRGSYSTNAKALTTLYATSE 646 Query: 272 Q-------AIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCV 323 + + +R ++ + + TL++A+N DGR+ T A+ TGR S Sbjct: 647 EGSRPNEFLGALLRHR-EVNKLRQI-VQTLIDAINPRDGRIHTTFTQTVAA-TGRLSSVD 703 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLA 382 QN+P + + + +RS + EG L+ AD + Sbjct: 704 PNLQNIPNRNATGRD-------------------------IRSAFVPGEGFADLLSADYS 738 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 +E R++A ++G++ +KAF++G D + + + + +VT DQR K M L Y Sbjct: 739 QVELRIMADLSGDEALIKAFKSGADFHRYVASMVYGIPVDEVTPDQRNHVKAMSYGLAYG 798 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + L + + Sbjct: 799 -----LSTYGLSQQLGIPS---------------------------------------KE 814 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 ++ + Q +V + L T Sbjct: 815 AAALRSRYFQTFGKVHDYLESLVSNARNT--------------------------GYTQT 848 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 GR + + + R +Q + DI+ M+ +A Sbjct: 849 MFGRRRYFPALTSAN---RVARDAAERGALNAP------IQGTAADIMKIAMIRVDRALR 899 Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 IVL +HDE+V E +E + L M + A +PL ++ Sbjct: 900 DGNLNSRIVLQIHDELVVELAPGEEKRVTELVRDAMEHAVNIA--VPLDVSTGVGSDWQ 956 >gi|15618522|ref|NP_224808.1| DNA polymerase I [Chlamydophila pneumoniae CWL029] gi|15836144|ref|NP_300668.1| DNA polymerase I [Chlamydophila pneumoniae J138] gi|16752428|ref|NP_444687.1| DNA polymerase I [Chlamydophila pneumoniae AR39] gi|4376908|gb|AAD18751.1| DNA Polymerase I [Chlamydophila pneumoniae CWL029] gi|7189071|gb|AAF38018.1| DNA polymerase I [Chlamydophila pneumoniae AR39] gi|8978984|dbj|BAA98819.1| DNA polymerase I [Chlamydophila pneumoniae J138] Length = 870 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 96/646 (14%), Positives = 199/646 (30%), Gaps = 132/646 (20%) Query: 42 VELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 V + +LK+ D+T +N + L + I + + Sbjct: 340 VFFIALEEEGTKILPILKDFFLREDLTFYGYNLKRDCHALLNA-GIVIREISY-DLALAE 397 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA-WRLFGE 159 + + E RF K + L P E + F Sbjct: 398 HLTNGGGKISFQSLLVNHG------FTETAHRFAKEWGNSGLPIGRLPEQPEQYFGEFVA 451 Query: 160 YC--KGDVTVTREIFKRLEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 Y D + K L + E L + ++ G +DV L + + E Sbjct: 452 YLPIIKDAILEEINRKNLNHILSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELA 511 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276 L +E+ L+ + + ++L L+ E GL D ++T VL + + P ++ Sbjct: 512 VLTEEIYDLSGRP-FNIKSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHPIIEKL 570 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R + + L + ++S R+ + GA TGR + QN+P S Sbjct: 571 LAFR-TIEKLLSTYVKALPKQVDSHTQRIHPSFDQTGA-VTGRLACRDPNLQNIPIRSER 628 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCV-IASEGKKLVVADLAGIEARVLAWMAG 394 +R ++ + + AD + IE R LA ++ Sbjct: 629 G-------------------------ILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQ 663 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ AFE+GED++ T ++ F+V QV+K+QR K + Sbjct: 664 DKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVN------------------ 705 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 F + A + + +A+ ++ Sbjct: 706 --------------------------FGIVYGQQAFGLAKVLKISIGEAQELIQAYFSRY 739 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 ++ + + +Q ++ + R + + Sbjct: 740 PEIAHF---VEETIQQAAKDLRVTTMLGRERI--------------------------ID 770 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTV 628 + + + R + G +Q + +++ M++ + ++L + Sbjct: 771 SWNEFPGS------RAAS-GRFAVNTRIQGSAAELIKLAMLDISQAIKQQQMKSRMLLQI 823 Query: 629 HDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 HDE++ E P+ + L M S + +P+ K + Sbjct: 824 HDELLFEVPEEEIEEMQRLVREKMESAMT--LSVPIVVNILIGKNW 867 >gi|313764718|gb|EFS36082.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1] gi|313772534|gb|EFS38500.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1] gi|313807262|gb|EFS45749.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2] gi|313815783|gb|EFS53497.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1] gi|313818308|gb|EFS56022.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2] gi|313820070|gb|EFS57784.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1] gi|313823121|gb|EFS60835.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2] gi|313825602|gb|EFS63316.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1] gi|313830677|gb|EFS68391.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1] gi|313833897|gb|EFS71611.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1] gi|314915209|gb|EFS79040.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4] gi|314918562|gb|EFS82393.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1] gi|314919825|gb|EFS83656.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3] gi|314925492|gb|EFS89323.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3] gi|314931840|gb|EFS95671.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1] gi|314955996|gb|EFT00394.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1] gi|314958391|gb|EFT02494.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1] gi|314960256|gb|EFT04358.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2] gi|314973679|gb|EFT17775.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1] gi|314976272|gb|EFT20367.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1] gi|314978243|gb|EFT22337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2] gi|314983518|gb|EFT27610.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1] gi|314987707|gb|EFT31798.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2] gi|314990186|gb|EFT34277.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3] gi|315084573|gb|EFT56549.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2] gi|315085909|gb|EFT57885.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3] gi|315088673|gb|EFT60649.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1] gi|315096299|gb|EFT68275.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1] gi|315101027|gb|EFT73003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1] gi|327325935|gb|EGE67725.1| DNA polymerase I [Propionibacterium acnes HL096PA2] gi|327332192|gb|EGE73929.1| DNA polymerase I [Propionibacterium acnes HL096PA3] gi|327442814|gb|EGE89468.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2] gi|327446185|gb|EGE92839.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2] gi|327447832|gb|EGE94486.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1] gi|327451036|gb|EGE97690.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3] gi|327453611|gb|EGF00266.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2] gi|328753069|gb|EGF66685.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1] gi|328753724|gb|EGF67340.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1] gi|328759186|gb|EGF72802.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2] gi|328760568|gb|EGF74136.1| DNA polymerase I [Propionibacterium acnes HL099PA1] Length = 892 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 99/657 (15%), Positives = 182/657 (27%), Gaps = 135/657 (20%) Query: 34 AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 A D +D + + L + D V H++ L ++ Sbjct: 349 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAER-GWEVAG 407 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + + A K + + L Sbjct: 408 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 460 Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 R DV E E L E + ++ G VD + L Sbjct: 461 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266 D T+ QE G + ++L+ LF + + T++ T L+ Sbjct: 521 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579 Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + P + +R ++ L++ + DGR+ T A TGR S Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 636 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383 QN+P + +R + EG + L+ AD + Sbjct: 637 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 671 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q + AF++G+D + T + F VAP V+ QR+ K M Sbjct: 672 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 726 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 GL+ + + Sbjct: 727 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 747 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + + +V E L + +Q G Sbjct: 748 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 782 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622 GR D+ + R +Q + D++ M+ + Sbjct: 783 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 832 Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E +E + + M +PL + + Sbjct: 833 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 887 >gi|146296993|ref|YP_001180764.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] gi|38146975|gb|AAR11872.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410569|gb|ABP67573.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 849 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 86/632 (13%), Positives = 179/632 (28%), Gaps = 134/632 (21%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLP 106 D + + L L++ + V ++ +L F + ++ + Sbjct: 342 TADKGIVEKL---LKDQGIQKVVYDLK---NILHRVDFGDTYQLKNCNDVMLASYVLDST 395 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + + + L + Sbjct: 396 RSSYDLETLFISYLNTDIAIIKENRWAG----ATILLRNLWDELSKLID----------- 440 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + + E L + + G+ V+ + ++ + KL+ ++ + Sbjct: 441 ----LNSCQYVYENIEIPLVPILYEMEKIGFKVNKNTLQEYTKEIESKLLKLETQIYQIA 496 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + ++L LF + L + T+ +T VL + + RM Sbjct: 497 G-EWFNINSPKQLSYVLFEKLKLPVVKKTKTGYSTDAEVLEELYDKHEIVPLILDYRMY- 554 Query: 284 SRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ L++A+NS GR+ G + TGR + QN+P Sbjct: 555 TKILTTYCQGLMQAINSVTGRVHSNFIQTG-TATGRLASAESNLQNIPVKYDEGR----- 608 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R I EG L+ AD + IE R+LA ++ ++ + AF Sbjct: 609 --------------------LIRKAFIPEEGYVLIDADYSQIELRILAHISEDERLINAF 648 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + D++ T A F V +QVT R+ K + + Y + + ++ Sbjct: 649 KNNLDIHSQTAAEIFGVDVSQVTPTMRSQAKAVNFGIIYGIS-----DYGLSKDIKISRK 703 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 N E++ + + + + E+ +R K + + + Sbjct: 704 EAAEFINRYFEKYPKVKEYLDNVVKFARENGFVLTLFNR--KRYIKDIKSTNKNLRNY-- 759 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + + G A K + VYR + Sbjct: 760 -AERIAMNSPIQGSAADIMKIAMI---------------------RVYRRLKEENLKSR- 796 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 I+ L VHDE++ E+P ++ Sbjct: 797 --------------------------II---------------LQVHDELLIESPYEEKE 815 Query: 643 NASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + M + S +PL E E + Sbjct: 816 IVKEIVKTEMENAVS--LKVPLVVEVKEGLNW 845 >gi|33241967|ref|NP_876908.1| DNA polymerase I [Chlamydophila pneumoniae TW-183] gi|33236477|gb|AAP98565.1| DNA-directed DNA polymerase I [Chlamydophila pneumoniae TW-183] Length = 870 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 97/646 (15%), Positives = 200/646 (30%), Gaps = 132/646 (20%) Query: 42 VELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 V + +LK+ D+T +N + L + I + + Sbjct: 340 VFFIALEEEGTKILPILKDFFLREDLTFYGYNLKRDCHALLNA-GIVIREISY-DLALAE 397 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA-WRLFGE 159 + + E RF K + L P E + F Sbjct: 398 HLTNGGGKISFQSLLVNHG------FTETAHRFAKEWGNSGLPIGRLPEQPEQYFGEFVA 451 Query: 160 YC--KGDVTVTREIFKRLEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 Y D + K L + E L + ++ G +DV L + + E Sbjct: 452 YLPIIKDAILEEINRKNLNHILSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELA 511 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276 L +E+ L+ G + + ++L L+ E GL D ++T VL + + P ++ Sbjct: 512 VLTEEIYDLSGGP-FNIKSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHPIIEKL 570 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R + + L + ++S R+ + GA TGR + QN+P S Sbjct: 571 LAFR-TIEKLLSTYVKALPKQVDSHTQRIHPSFDQTGA-VTGRLACRDPNLQNIPIRSER 628 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCV-IASEGKKLVVADLAGIEARVLAWMAG 394 +R ++ + + AD + IE R LA ++ Sbjct: 629 G-------------------------ILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQ 663 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ AFE+GED++ T ++ F+V QV+K+QR K + Sbjct: 664 DKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVN------------------ 705 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 F + A + + +A+ ++ Sbjct: 706 --------------------------FGIVYGQQAFGLAKVLKISIGEAQELIQAYFSRY 739 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 ++ + + +Q ++ + R + + Sbjct: 740 PEIAHF---VEETIQQAAKDLRVTTMLGRERI--------------------------ID 770 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTV 628 + + + R + G +Q + +++ M++ + ++L + Sbjct: 771 SWNEFPGS------RAAS-GRFAVNTRIQGSAAELIKLAMLDISQAIKQQQMKSRMLLQI 823 Query: 629 HDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 HDE++ E P+ + L M S + +P+ K + Sbjct: 824 HDELLFEVPEEEIEEMQRLVREKMESAMT--LSVPIVVNILIGKNW 867 >gi|269302395|gb|ACZ32495.1| DNA polymerase I [Chlamydophila pneumoniae LPCoLN] Length = 870 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 92/645 (14%), Positives = 195/645 (30%), Gaps = 130/645 (20%) Query: 42 VELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 V + +LK+ D+T +N + L + I + + Sbjct: 340 VFFIALEEEGTKILPILKDFFLREDLTFYGYNLKRDCHALLNA-GIVIREISY-DLALAE 397 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA-WRLFGE 159 + + E RF K + L P E + Sbjct: 398 HLTNGGGKISFQSLLVNHG------FTETAHRFAKEWGNLGLPIGRLPEQPEQYFGELVA 451 Query: 160 YC--KGDVTVTREIFKRLEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 Y D + K L + E L + ++ G +DV L + + E Sbjct: 452 YLPIIKDAILEEINRKNLNHILSDIEMPLEKVLVSMERAGVPLDVEELAILEALFETELA 511 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276 L +E+ L+ + + ++L L+ E GL D ++T VL + + P ++ Sbjct: 512 VLTEEIYDLSGRP-FNIKSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHPIIEKL 570 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R + + L + ++S + + TGR + QN+P S Sbjct: 571 LAFR-TIEKLLSTYVKALPKQVDSHTQRIHPSFDQTGTVTGRLACRDPNLQNIPIRSERG 629 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCV-IASEGKKLVVADLAGIEARVLAWMAGE 395 +R ++ + + AD + IE R LA ++ + Sbjct: 630 -------------------------ILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQD 664 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+GED++ T ++ F+V QV+K+QR K + Sbjct: 665 KSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVN------------------- 705 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 F + A + + +A+ ++ Sbjct: 706 -------------------------FGIVYGQQAFGLAKVLKISVGEAQELIQAYFSRYP 740 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ + + +Q ++ + R + + + Sbjct: 741 EIAHF---VEETIQQAAKDLRVTTMLGRERI--------------------------IDS 771 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 + + R + G +Q + +++ M++ + ++L +H Sbjct: 772 WNEFPGS------RAAS-GRFAVNTRIQGSAAELIKLAMLDISQAIKQQQMKSRMLLQIH 824 Query: 630 DEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 DE++ E P+ + L M S + +P+ K + Sbjct: 825 DELLFEVPEEEIEEMQRLVREKMESAMT--LSVPIAVNILIGKNW 867 >gi|254303697|ref|ZP_04971055.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323889|gb|EDK89139.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 914 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 91/689 (13%), Positives = 213/689 (30%), Gaps = 137/689 (19%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCV----ILFAFGFDDHPVELWDCVHDPVMPQVL- 57 L ID E S ++ K + Y + + + +D + H ++ + + Sbjct: 341 VLIIDSE--SSLNEQKEYLANYKKIASIYYESLGIIISTEDKD-FYFPLNHGGLLAKNID 397 Query: 58 ----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + D+ +++N L + ++ ++ + + + Sbjct: 398 KNLVVNFISQLDIKFISYNFK----ALLN-LGISFK-SMYMDMMIAYHLISSQTKIDPII 451 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + S + ++ K + + + + + Y + + + Sbjct: 452 AITEYSKLEPKDFKATFGKVNVELITTQDFSKYLS--DISIGILAIYDELNYL--LKKED 507 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + L E L + + +G +DV + +D E ++++ + + Sbjct: 508 LYKVLMENEMPLIPVLSLMERKGIEIDVQYFKNYSVELDKELLRIEKAIYEEAG-EEFNI 566 Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF++ L T+ +T VL + ++ + + ++ Sbjct: 567 NSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTY 626 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++TL ++ + R+ + +G + TGR S QN+P + + Sbjct: 627 VDTLPLLVDENSRIHTSFNQIG-TATGRLSSSDPNLQNIPVKTDDGIK------------ 673 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R IA EGK L+ D + +E RVL M+ ++ ++A+ +DL+ Sbjct: 674 -------------IREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLHD 720 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T R FN+A ++ + Sbjct: 721 LTARRIFNLADSET-------------------------------------------VSR 737 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 NF + A E K + +++ RV+ E+ + E+ Sbjct: 738 EQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIEFGEE 797 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + + GR + + T Q R Sbjct: 798 --------------------------HGYVKTLFGRKRYISGIDSKN---KTIKSQAERM 828 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 ++Q + ++L + M+ K ++L VHDE++ E + S Sbjct: 829 A------VNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEKSSVEKYS 882 Query: 646 ML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M + + + L K + Sbjct: 883 EILADIMKNTVQL-EDVKLNININIGKNW 910 >gi|118855|sp|P19822|DPOL_BPT5 RecName: Full=DNA polymerase gi|215988|gb|AAA32561.1| polymerase [Enterobacteria phage T5] Length = 829 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 86/696 (12%), Positives = 177/696 (25%), Gaps = 157/696 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALE 62 + D ET Y D ++ + ++ D V L++ L+ Sbjct: 135 VAFDSETS----------ALYCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILD 184 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDI----PIHRWICTLVLARSNGL---PSALKAVGEA 115 + + TIV HN F+ K L R T++ LK++ Sbjct: 185 SENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 244 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 EL + + + + Y D T + Sbjct: 245 YTDMGDYD---FELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFF 301 Query: 176 EPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE- 223 P K Q + DRG + + + K ++L Sbjct: 302 LPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREKLYT 361 Query: 224 -------SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTP 271 + +++L+ LF GL ++T L+ P Sbjct: 362 YPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELATQHP 421 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 A + R + ++ + ++ ++++DG +R + S Q LPR Sbjct: 422 IAKTLLEIR-KLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQLPR 480 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 ++ CV+A G +++ DL E A Sbjct: 481 D----------------------------ESIIKGCVVAPPGYRVIAWDLTTAEVYYAAV 512 Query: 392 MAGEQWKLKAFETGEDLYVTTYA------------RSFNVAPAQVTKDQRAIGKVMELAL 439 ++G++ + F + + ++ R K + + Sbjct: 513 LSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGI 572 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y G +N KT E Sbjct: 573 LYGSGPAKVAH-----SVNEALLEQAAKTGEPFVE-----------------------CT 604 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + + + ++ ++ H + + Sbjct: 605 VADAKEYIETYFGQFPQLKRWIDKCHDQIKN--------------------------HGF 638 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + GR ++ + + + I+Q+ S D L G ++A Sbjct: 639 IYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAVDADN 689 Query: 620 A--------GYDIVLTVHDEIVCETPDTDEFNASML 647 IV+ VHD +V + + + Sbjct: 690 EIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEI 725 >gi|254518126|ref|ZP_05130182.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] gi|226911875|gb|EEH97076.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] Length = 532 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 112/694 (16%), Positives = 219/694 (31%), Gaps = 181/694 (26%) Query: 1 MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57 M F D ET S + L AF + V + + L Sbjct: 1 MKNNEVFFFDTETDSLD----------FRTGKIKLIAFSKGLNEVVT-----TTSVDERL 45 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE-A 115 K L + ++ V HN+ F+ ++ ++ + CTL++A+ G +LKA+ + Sbjct: 46 KSILNDKNIIKVFHNAKFDVGFFQS---KGYRVNNYHCTLLMAQVLGEEKLSLKALAKKY 102 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L + K + + E + +Y DV TR ++ +L Sbjct: 103 LDVDMDK------------------SMQHSDNWQETEITQEHIDYAVKDVEHTRALYYKL 144 Query: 176 EPLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 L +E+ + G ++ + +L+ ++ L Sbjct: 145 LDLLVENNLLTVYERERRALPAIVMLESNGINMEFDKWNARLDDDRRLAVELEIRIKDLL 204 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L + +E G+ L +T L+ + R ++ Sbjct: 205 NRKELNLNSPKQLVEAI-VEYGIKLH----STSDDELAKYSDEHEVIKLIRKYRRLQAKI 259 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 L + +++DGR+R + +G+ R+GR S P Q +P S Sbjct: 260 K-TYGEKLKKFIDNDGRIRAHWRLIGS-RSGRMSCNNPPLQAMPGNS------------- 304 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 R +A EG KL+ +D + IE RVLA ++ ++ + F G Sbjct: 305 ------------------REFFVADEGYKLIGSDYSQIELRVLASISKDETLISYFNNGI 346 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 DL++ T + F +++K++R + K + + Y A QK +G++ + Sbjct: 347 DLHLGTASLIFKKPIDEISKEERQVAKSLNFGIVYGITAYGIQKNLRKSGVDTS------ 400 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 E+ + + + +V EL + L + Sbjct: 401 ---------------------------------LEEAEKYRIEFLNVYPKVKELQDSLLK 427 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 A + GR Sbjct: 428 A------------------------------DYIKTLGGRR------------------- 438 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNA---TKAGYDIVLTVHDEIVCETPDTDEFN 643 + +Q + + L E + K + +V +HDEI+ E P+ + Sbjct: 439 WQGGSLTMTQRLNLPIQGSAAEGLKEALALLVERMKESWRLVAVIHDEILLEVPEDEAEE 498 Query: 644 ASMLYH-LMTSNPS-WAKGLPLKAEGYESKRYRK 675 A + M K +P+ + S + K Sbjct: 499 AKNILESCMVEGMKTIVKDIPIIVDSSVSNNWCK 532 >gi|239917614|ref|YP_002957172.1| DNA polymerase I [Micrococcus luteus NCTC 2665] gi|239838821|gb|ACS30618.1| DNA polymerase I [Micrococcus luteus NCTC 2665] Length = 937 Score = 260 bits (663), Expect = 8e-67, Method: Composition-based stats. Identities = 102/658 (15%), Positives = 189/658 (28%), Gaps = 141/658 (21%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-CFNLDIPI-----HRWICTLVLAR 101 DP + ++EAL + H+ L A + L+ A Sbjct: 384 APDPALVAAVREALGEGGLAKAVHDLKRTLKALAAPTEGDGLGPDAALDGVVDDVLLSAY 443 Query: 102 SNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 +L+A+ EA + + ++ Sbjct: 444 LIQPDRRDTSLEALAEAHLHTPLAAPREPAQQRAQGTFDLDGGQAAADRAARAADAVRAA 503 Query: 159 EYCKGDVTV-TREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVER 215 + T T ++ R +E E+ L + G VDV L + Sbjct: 504 WVVRRLSTQFTPQVLDRGAQRLLQELEIPLSRLLARMELAGIAVDVDALTDLREDFTAAA 563 Query: 216 TKLDQELE----SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK 268 + T G+ + ++L+ LF + T+ +T L + Sbjct: 564 DAAKESAWASVAEETGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLE 623 Query: 269 L--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 P + +R A++ + L+E + D R+ T A+ TGR S Sbjct: 624 QTRHPFLENLMAHR-DATKLRQT-VEGLLETVAPDDRIHTTYSQ-TAAATGRLSSLHPNL 680 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE--GK--KLVVADLA 382 QN+P + + +R +A E G+ L+ AD + Sbjct: 681 QNIPVRTEAGRR-------------------------IREVFVADEVAGEQAVLLSADYS 715 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++ ++ ++AF GEDL+ ++ F V P +VT +QRA K M L Y Sbjct: 716 QIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAYG 775 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + L Sbjct: 776 -----LSSFGLSKQL---------------------------------------KISVDE 791 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + K + + V + ++ Q + Sbjct: 792 ARGLMKGYFDRFGGVRDYLRDVVAQARQ--------------------------DGYTST 825 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----- 617 GR D+ ++ R +Q + DI+ M++ Sbjct: 826 IEGRRRYLPDLSSDN---RQLRDMAERAALNAP------IQGSAADIIKRAMLDVQAGLE 876 Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P + A ++L M +PL + + Sbjct: 877 EHGLASRLLLQVHDELILEVPAAELEQATALLEERMGRAAE--LSVPLDVHVGRGRSW 932 >gi|304407962|ref|ZP_07389612.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9] gi|304342981|gb|EFM08825.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9] Length = 885 Score = 259 bits (662), Expect = 9e-67, Method: Composition-based stats. Identities = 84/658 (12%), Positives = 175/658 (26%), Gaps = 127/658 (19%) Query: 29 CVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERT----VLKAC 83 I A D + + ++E L + D+ + F+ L Sbjct: 338 ETIAVALATADV-IFVVPMAELQASALGFVREWLADADMEK----AGFDLHRTELSLAWH 392 Query: 84 FNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSS-QKMEEGKELIARFCKGETH 139 + + + A ++ + L + Q E A+F E Sbjct: 393 -GIALKGIS-FDIQLAAYLLDPTDSTQSISGLCGKYGLPTVQADESVYGKGAKFKLPEAG 450 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 + + + T +++ EQ L + + +G Sbjct: 451 VLHGHIASKTDAVRSIAAIQREELEKTGMHKLYY------DLEQPLSRVLAGMELQGIRC 504 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256 D ++ L ++ + + ++ +L + +L LF + GL + T+ Sbjct: 505 DASVIEQLGAELESRISDIMTKVYTLAGM-EFNINSPRQLGEVLFEKLGLPVIKKTKTGY 563 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL + + R ++ + L++ + + T + T Sbjct: 564 STDADVLEKLEPYHEIIPSILLFRQ-LAKLQSTYVEGLLKEIRPNTGKIHTYYRQTIAAT 622 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKK 375 GR S QN+P +R + G Sbjct: 623 GRLSSQYPNLQNIPIRLEEGR-------------------------QIRKAFVPSEPGWF 657 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 ++ AD + IE RVLA ++G++ +AF D++ T + F V P V + R K + Sbjct: 658 MLAADYSQIELRVLAHISGDEGLKEAFVQDLDIHTKTASDVFGVRPEDVDANMRRQAKAV 717 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + Y + LN+ ++ + + Sbjct: 718 NFGIVYGIS-----DFGLSNNLNITRKEAAQFIEQYFAAFQGVRRYMDNIVAQARTDGYV 772 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + R + + + + T G A K V + + + Sbjct: 773 TTLL--ERRRYLPEIKASNFNIRSF---AERTAMNTPIQGTAADIIKLAMVRMDEQLRAR 827 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 RS + V + + Sbjct: 828 GL--------RSRMLLQVHDELVFEVPA-------------------------------- 847 Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 DE+ E ++ +M S +PLKA+ + Sbjct: 848 --------------DEL--------ELMKELVPQVMESAIK--LDVPLKADVSFGDNW 881 >gi|253316034|ref|ZP_04839247.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 368 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 129/413 (31%), Positives = 185/413 (44%), Gaps = 65/413 (15%) Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R++ S+++V K N + + M SD R+RG QF GA TGRW+G QNL + S EL Sbjct: 3 RLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL 61 Query: 340 DQIITHLPTSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + + D D P ++S VR+ A EG +L V+D + IEARV+AW A Sbjct: 62 EIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYA 121 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKM 451 EQW+L F T +Y + ++ FNV +TK GKV ELALGYQGGA A + M Sbjct: 122 KEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAM 181 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A+E + + +WR Sbjct: 182 G----------------------------------------ALEMGIEENELQGLVDSWR 201 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + + W +A T+++ K R K L++ LPSGR+L Y Sbjct: 202 NANPNIVNFWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYP 255 Query: 572 D-VGNNRSYLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 + S+ + R+ ++ TYGGKL ENIVQA +RD+LA + G+ Sbjct: 256 KALVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGF 315 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV VHDE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 316 KIVGHVHDEVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 367 >gi|237740779|ref|ZP_04571260.1| DNA polymerase I [Fusobacterium sp. 2_1_31] gi|229422796|gb|EEO37843.1| DNA polymerase I [Fusobacterium sp. 2_1_31] Length = 916 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 104/693 (15%), Positives = 217/693 (31%), Gaps = 151/693 (21%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCV----ILFAFGFDDHPVELWDCVHDPVMPQV----- 56 ID ET ++ K + Y + + + ++ + + H ++ + Sbjct: 346 IDNET--LLNEQKEYLNNYKKIASIYYEELGIILSTEEKDL-YFPLNHGGLLSKNIDKNT 402 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV---- 112 L + + DV +++N L +++A V Sbjct: 403 LIKFIAELDVKFISYNFK----TLLN-LGFTFKSMYMD--MMIAYHLISSQTKMDVFIPI 455 Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 E + ++ K GK I GE L + K E Sbjct: 456 TEYSNVDAKDFKTTFGKAHIETLLVGEFAGYLSKIGLGILAIYDEINHILHKE------E 509 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++ L E L + + +G +DV+ + ++ E K+++ + Sbjct: 510 LYDIL---IQNEMPLIPVLSLMERKGIKIDVSYFKNYSLELEKELAKIEKAIYEEAG-EE 565 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF++ L T+ +T VL + ++ + + ++ Sbjct: 566 FNINSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLK 625 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 ++TL ++S+ R+ + +G + TGR S QN+P + + Sbjct: 626 TTYVDTLPNLVDSNSRIHTSFNQIG-TATGRLSSSEPNLQNIPVKTDDGIK--------- 675 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R +A EGK L+ D + +E RVL M+ ++ ++A+ +D Sbjct: 676 ----------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKD 719 Query: 408 LYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 L+ T R FN+ VT++QR I Sbjct: 720 LHDLTARRIFNLSDSDDVTREQRTIA---------------------------------- 745 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 NF + A E K + +++ RV+ E+ + Sbjct: 746 ----------KIINFSIIYGKTAFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIE 795 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 E+ + + GR + + T Q Sbjct: 796 FGEE--------------------------HGYVKTLFGRKRYISGIDSKN---KTIKAQ 826 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPDTDE 641 R ++Q + ++L + M+ K ++L VHDE++ E ++ Sbjct: 827 AERMA------VNTVIQGTAAEVLKKVMLKVYETLKDKDDIALLLQVHDELIFEVEESSV 880 Query: 642 FNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 S + +M + + + L K + Sbjct: 881 EKYSEILADIMKNTVKL-EDVNLNININIGKNW 912 >gi|326633006|ref|YP_004306595.1| DNA polymerase [Enterobacteria phage SPC35] gi|321272200|gb|ADW80092.1| DNA polymerase [Enterobacteria phage SPC35] Length = 855 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 87/696 (12%), Positives = 179/696 (25%), Gaps = 157/696 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALE 62 + D ET Y D ++ + ++ D V L++ L+ Sbjct: 161 VAFDSETS----------ALYCRDGYLLGVSMSHQEYQGVYIDSDCLTEVAVYYLQKILD 210 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDI----PIHRWICTLVLARSNGL---PSALKAVGEA 115 + + TIV HN F+ K L R T++ LK++ Sbjct: 211 SENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 270 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 E + +CK + + + Y D T + Sbjct: 271 YTDMGDYDFELDKFKDDYCKAHKI---KKEDFTYDLIPFDIMWPYAAKDTDATLRLHNFF 327 Query: 176 EPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE- 223 P K Q + DRG + + + K ++L Sbjct: 328 LPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREKLYT 387 Query: 224 -------SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTP 271 + +++L+ LF GL ++T L+ P Sbjct: 388 YPEVVQLEKDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELSTQHP 447 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 A + R + ++ + ++ ++++DG +R + S Q LPR Sbjct: 448 IAKTLLEIR-KLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQLPR 506 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 ++ CV+A G +++ DL E A Sbjct: 507 D----------------------------ESIIKGCVVAPPGYRVIAWDLTTAEVYYAAV 538 Query: 392 MAGEQWKLKAFETGEDLYVTTYA------------RSFNVAPAQVTKDQRAIGKVMELAL 439 ++G++ + F + + ++ R K + + Sbjct: 539 LSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGI 598 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y G +N KT E Sbjct: 599 LYGSGPAKVAH-----SVNEALLEQAAKTGEPFVE-----------------------CT 630 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + + + ++ ++ H + + Sbjct: 631 VADAKEYIETYFGQFPQLKRWIDKCHDQIKN--------------------------HGF 664 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + GR ++ + + + I+Q+ S D L G ++A Sbjct: 665 IYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAVDADN 715 Query: 620 A--------GYDIVLTVHDEIVCETPDTDEFNASML 647 IV+ VHD +V + + + Sbjct: 716 EIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEI 751 >gi|294782071|ref|ZP_06747397.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA] gi|294480712|gb|EFG28487.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA] Length = 916 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 99/696 (14%), Positives = 216/696 (31%), Gaps = 157/696 (22%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCV----ILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 ID ET ++ K + Y + + + ++ + + H ++ + + Sbjct: 346 IDNET--LLNEQKEYLNNYKKIASIYYEELGIILSTEEKDL-YFPLNHGGLLSKNI---- 398 Query: 62 ENTDVTIVAHNSYF----ERTVLKACFNLDIPIHRWI-----CTLVLARSNGLPSALKAV 112 + + F + + F + + ++ + + + Sbjct: 399 -DKNTL-----IKFISELDVKFISYNFKTLLNLGFTFKSMYMDMMIAYHLISSQTKMDVI 452 Query: 113 ---GEALKLSSQ--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 E + ++ K GK I GE L + K Sbjct: 453 IPITEYSNVDAKDFKTTFGKAHIETLLVGEFAGYLSKIGLGILAIYDEINHILHKE---- 508 Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E++ L E L + + +G +DV+ + ++ E K+++ + Sbjct: 509 --ELYDIL---IQNEMPLIPVLSLMERKGIKIDVSYFKNYSSELEKELAKIEKSIYEEAG 563 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L LF++ L T+ +T VL + ++ + + + Sbjct: 564 -EEFNINSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLN 622 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + ++TL ++S+ R+ + +G + TGR S QN+P + + Sbjct: 623 KLKTTYVDTLPNLVDSNSRIHTSFNQIG-TATGRLSSSEPNLQNIPVKTDDGIK------ 675 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +R +A EGK L+ D + +E RVL M+ ++ ++A+ Sbjct: 676 -------------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYRE 716 Query: 405 GEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 +DL+ T R FN+ VT++QR I Sbjct: 717 EKDLHDLTARRIFNLSDSDDVTREQRTIA------------------------------- 745 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 NF + A E K + +++ RV+ E Sbjct: 746 -------------KIINFSIIYGKTAFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKE 792 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + + E+ + + GR + + T Sbjct: 793 VIEFGEE--------------------------HGYVKTLFGRKRYISGIDSKN---KTI 823 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPD 638 Q R ++Q + ++L + M+ K ++L VHDE++ E + Sbjct: 824 KAQAERMA------VNTVIQGTAAEVLKKVMLKVYETLKDKDDIALLLQVHDELIFEVEE 877 Query: 639 TDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 + S + +M + + + L K + Sbjct: 878 SSVEKYSEILADIMKNTVKL-EDVNLNININIGKNW 912 >gi|221060476|ref|XP_002260883.1| POM1 homolog [Plasmodium knowlesi strain H] gi|193810957|emb|CAQ42855.1| POM1 homolog, putative [Plasmodium knowlesi strain H] Length = 1861 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 87/657 (13%), Positives = 176/657 (26%), Gaps = 143/657 (21%) Query: 10 TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLKEALENTDVT 67 T +D+ G+ + D + L +++PV ++D + + L+E L+N V Sbjct: 1310 THCGLDIETTGLEVF--DEKIRLIQIAVENYPVIIYDMFNITKESILTGLREILKNEKVV 1367 Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA------VGEALKLSSQ 121 + N F+ L + + T + ++ + V + L ++ Sbjct: 1368 KIIQNGKFDAKFLMHN---NFQVDNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVTLD 1424 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 K ++ + + +L E CK ++ ++ Sbjct: 1425 KQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICKENMET----------VNDI 1474 Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E + + G VD+ + E +L++ + +++ Sbjct: 1475 ENKCILPICDMELNGITVDLESLKKSTNEILSELNTETSKLKAELKDEEININSQQQVLK 1534 Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 L + + N + + + N R + L + +N Sbjct: 1535 ALQNNNVRDISNKLIENTSDSNLKNFLNHKEVVLLRNYRR-LYKLYSAFYLKLPQHINKK 1593 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 T + +GR+S Q +PR Sbjct: 1594 TNKIHTTFNQLKTFSGRFSSEKPNLQQIPR-----------------------------Q 1624 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R I + ++AD IE ++ A + + LKA+ DL+ T + Sbjct: 1625 KNIREIFIPQKDNIFIIADFKQIELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKKPI 1684 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 A V K+ R I K + L Y + A+T Sbjct: 1685 ADVNKEDRHIAKAINFGLIYGMNYVNLKNYANTY-------------------------- 1718 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 C ++ + + + +Q + ++ Sbjct: 1719 ------------YNLNMNLDQCLYFYNSFFEHYKGIYRWH----NQIKQIRGLEYSTLSN 1762 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 ++ P K Sbjct: 1763 RKVIFPYFSFT-------------------------------------------KALNYP 1779 Query: 602 VQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTS 653 VQ DIL ++ K I+L VHDEI+ E E +L M + Sbjct: 1780 VQGTCADILKLSLVELYKNLKPIHGKIILCVHDEIIIEVDKKYQEDALKILVESMEN 1836 >gi|206900363|ref|YP_002250598.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12] gi|38146985|gb|AAR11877.1| DNA polymerase I [Dictyoglomus thermophilum] gi|206739466|gb|ACI18524.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12] Length = 856 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 81/649 (12%), Positives = 172/649 (26%), Gaps = 142/649 (21%) Query: 32 LFAFGFDDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 + F + + + + ++ + + +V + + L N I Sbjct: 337 GISLSFKEGEGYFISPFDFNNEIRKKIENIISSENVKKIGSYIQRDLHFL----NCKIK- 391 Query: 91 HRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + + +L + G+ L + + K Sbjct: 392 GDVFDVSLASYLLNPERQNHSLDIL------------IGEYLNKTSFIPQKYAGYLFPLK 439 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 E + G + ++ PL + ++ G VD L Sbjct: 440 SILEERIKNEG--------LEFVLYNIEIPL-------IPVLYSMEKWGIKVDKEYLKQL 484 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 + KL++E+ L + ++L LF L + +T VL Sbjct: 485 SDEFCERIKKLEEEIYELAGTR-FNLNSPKQLSEVLFERLKLPSGKKGKTGYSTSSSVLQ 543 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + P ++ R + ++ + +N T + TGR S Sbjct: 544 NLINAHPIVRKILQYR-ELYKLKSTYVDAIPNLVNPQTGRVHTKFNPTGTATGRISSSEP 602 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P S + +R ++ +G LV D + I Sbjct: 603 NLQNIPIKSEEGRK-------------------------IRRAFVSEDGYFLVSLDYSQI 637 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ E + AF+ GED++ T + F V +V R+ K + + Y Sbjct: 638 ELRIMAHLSQEPKLISAFQKGEDIHRRTASEIFGVPEEEVDDLLRSRAKAVNFGIIYGIS 697 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 + +++ +S + + + F E G + Sbjct: 698 -----SFGLSETVSITPEEAEKFIDSYFKHYPRVKLFIDKTIHEAREKLYVKTLFGR--K 750 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 R + + +V + G A K + + Sbjct: 751 RYIPEIKSINKQVRN---AYERIAINAPIQGTAADIIKLAMIEI---------------- 791 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 Y+++ N ++ + Sbjct: 792 -----YKEIENKNLKSRI-------------------------------LLQIHDE---L 812 Query: 625 VLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKR 672 +L E P+ + ++ M +PL E K Sbjct: 813 IL--------EVPEEEMEFTPLMAKEKMEKVVE--LSVPLVVEISVGKN 851 >gi|327399380|ref|YP_004340249.1| DNA polymerase I [Hippea maritima DSM 10411] gi|327182009|gb|AEA34190.1| DNA polymerase I [Hippea maritima DSM 10411] Length = 801 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 82/573 (14%), Positives = 177/573 (30%), Gaps = 124/573 (21%) Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT----REIF 172 +K +L + ++ + + EA+ + + + + Sbjct: 333 GFQFEKYPFDIKLASYLVNPDSKGNPRVCFENINDEAFAKLMNLSEEEAILESYPFLREY 392 Query: 173 KRLEPLS----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 L+ E L + ++ RG +D + + + ++++ +L Sbjct: 393 IEGNNLNFLLSQVETPLSEVLVSMEKRGIKIDSEYLTSFENELANKLYATEKQIHALAG- 451 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ LF + G+ T+ +T L + A + R S+ Sbjct: 452 EEFNINSTKELQRILFEKLGIKPIKKTKTGYSTDSESLQMLAQKYEIAQLIITYR-AISK 510 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + ++ M+ RL T + TGR S QNLP Sbjct: 511 VISTYIRPFLDKMDKSNRLHTTFNQ-TLTSTGRLSSSNPNLQNLPAGDDE---------- 559 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 + +R V+A +G KL+ +D + IE RVLA M+ ++ ++ F+ Sbjct: 560 --------------LHSGIRKSVVAPKGYKLICSDYSQIELRVLAQMSKDKTLIEIFKNN 605 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 ED++ T + F V P+ V R + K + G+ Sbjct: 606 EDIHTQTAVKIFGVHPSMVDHHLRRMAKTINF--------------GIIYGMG------- 644 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + + + + ++ + V + Sbjct: 645 -----------------------YVSLSKTLNISKDKARQFIEKYFERFAGVKSY---IE 678 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 E+ +NG + GR + ++ +N L + Sbjct: 679 NTTEKATKNG-----------------------FVETYFGRRRYFFNINSNNKRLAQFEK 715 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDE 641 + +Q + DI+ M+ + IVL VHDE++ E + Sbjct: 716 RA---------AVNATIQGTAADIIKIAMVKLYEKLKNLDAHIVLQVHDELLVEAKEDIA 766 Query: 642 FNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 N + + M + + +P+K + + Sbjct: 767 ENVAGIVKDTMENAVKF--DIPIKTNTKIANNW 797 >gi|59897255|gb|AAX12050.1| DNA polymerase [Enterobacteria phage T5] Length = 825 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 87/696 (12%), Positives = 179/696 (25%), Gaps = 157/696 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALE 62 + D ET Y D ++ + ++ D V L++ L+ Sbjct: 131 VAFDSETS----------ALYCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILD 180 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDI----PIHRWICTLVLARSNGL---PSALKAVGEA 115 + + TIV HN F+ K L R T++ LK++ Sbjct: 181 SENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 240 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 E + +CK + + + Y D T + Sbjct: 241 YTDMGDYDFELDKFKDDYCKAHKI---KKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFF 297 Query: 176 EPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE- 223 P K Q + DRG + + + K ++L Sbjct: 298 LPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREKLYT 357 Query: 224 -------SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTP 271 + +++L+ LF GL ++T L+ P Sbjct: 358 YPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELATQHP 417 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 A + R + ++ + ++ ++++DG +R + S Q LPR Sbjct: 418 IAKTLLEIR-KLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQLPR 476 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 ++ CV+A G +++ DL E A Sbjct: 477 D----------------------------ESIIKGCVVAPPGYRVIAWDLTTAEVYYAAV 508 Query: 392 MAGEQWKLKAFETGEDLYVTTYA------------RSFNVAPAQVTKDQRAIGKVMELAL 439 ++G++ + F + + ++ R K + + Sbjct: 509 LSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGI 568 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y G +N KT E Sbjct: 569 LYGSGPAKVAH-----SVNEALLEQAAKTGEPFVE-----------------------CT 600 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + + + ++ ++ H + + Sbjct: 601 VADAKEYIETYFGQFPQLKRWIDKCHDQIKN--------------------------HGF 634 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + GR ++ + + + I+Q+ S D L G ++A Sbjct: 635 IYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAVDADN 685 Query: 620 A--------GYDIVLTVHDEIVCETPDTDEFNASML 647 IV+ VHD +V + + + Sbjct: 686 EIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEI 721 >gi|313827841|gb|EFS65555.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2] gi|315108218|gb|EFT80194.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2] Length = 892 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 99/657 (15%), Positives = 183/657 (27%), Gaps = 135/657 (20%) Query: 34 AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 A D +D + + + L + D V H++ L ++ Sbjct: 349 AVALGGVDGNAVWFDAAELSLEDEDVFAAWLADKDRPKVMHSAKGPVEALAER-GWEVAG 407 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + + A K + + L Sbjct: 408 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 460 Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 R DV E E L E + ++ G VD + L Sbjct: 461 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266 D T+ QE G + ++L+ LF + + T++ T L+ Sbjct: 521 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579 Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + P + +R ++ L++ + DGR+ T A TGR S Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 636 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383 QN+P + +R + EG + L+ AD + Sbjct: 637 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 671 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q + AF++G+D + T + F VAP V+ QR+ K M Sbjct: 672 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 726 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 GL+ + + Sbjct: 727 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 747 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + + +V E L + +Q G Sbjct: 748 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 782 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622 GR D+ + R +Q + D++ M+ + Sbjct: 783 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 832 Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E +E + + M +PL + + Sbjct: 833 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 887 >gi|217967271|ref|YP_002352777.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724] gi|217336370|gb|ACK42163.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724] Length = 855 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 84/649 (12%), Positives = 170/649 (26%), Gaps = 142/649 (21%) Query: 32 LFAFGFDDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 + F + + + +K+ + ++ + + L + I Sbjct: 336 GISISFKEGEGYFIASFDFNDEVKGKVKDIISFENIKKIGAYIQRDLHFL----DCKIK- 390 Query: 91 HRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + + +L + L + + K Sbjct: 391 GEVFDVSLASYLLNPERQNHSLDILIREY------------LNRTSFIPQKYAAYLFPLK 438 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 E + + +F E L + ++ G VD +L Sbjct: 439 TILEERIKK--------EELEFVLFNI-------ETPLIPVLYSMEKWGIKVDKEYLKSL 483 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 + KL++E+ L + ++L LF L + +T VL Sbjct: 484 SDEFCERIKKLEEEIYELAGMK-FNLNSPKQLSEVLFERLKLPSGKKGKTGYSTSSLVLQ 542 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + P I++ R + ++ + +NS T + TGR S Sbjct: 543 NLLNAHPIVIKILQYR-ELYKLKSTYIDAIPNLINSQTGRVHTKFNPTGTATGRISSSEP 601 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P S + +R IA +G V D + I Sbjct: 602 NLQNIPIKSEEGRK-------------------------IRRAFIADDGYYFVSLDYSQI 636 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ E + AF+ GED++ T A F V +V R+ K + + Y Sbjct: 637 ELRIMAHLSQEPKLISAFQKGEDIHRRTAAEIFGVPEDEVDDLLRSRAKAVNFGIIYGIS 696 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 + + A ++ +S + + + F E G + Sbjct: 697 SFGLSETA-----SITPEEAEKFIDSYFKHYPRVKLFIDKTIYEAREKLYVKTLFGR--K 749 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 R R + +V + G A K + + Sbjct: 750 RYIPEIRSINKQVRN---AYERIAINAPIQGTAADIIKLAMIEI---------------- 790 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 Y+++ ++ Sbjct: 791 -----YKEIEEKNLKSRI-------------------------------LLQIHD----- 809 Query: 625 VLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKR 672 E++ E P+ + ++ M +PL E K Sbjct: 810 ------ELILEVPEEEMEFTPLMAKEKMEKVVE--LSVPLVVEISVGKN 850 >gi|227496059|ref|ZP_03926368.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] gi|226834387|gb|EEH66770.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] Length = 899 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 104/683 (15%), Positives = 191/683 (27%), Gaps = 155/683 (22%) Query: 20 GICKYAEDVCVILFAFGFDDHPVELWD----CVHDPVMPQVLKEALENTDVTIVAHNSYF 75 + D V+ + D + D D L L + D V ++ Sbjct: 340 TLAPGRGDAQVVAVS---DGARSLVVDMTLLLAQDEEALDQL---LSDPDHPKVVADAKG 393 Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG----EALKLSSQKMEEGKELIA 131 L + + + A V L L + + + E Sbjct: 394 SWHAL-RGRGIGLD-GVVADPALAAYLCRPEQRSYDVATLAERWLGLDLESLAQ-AEPQT 450 Query: 132 RFCKGETHECLYDRNKPNHR-------EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 F + R + GE VT + E Sbjct: 451 AFDLESLADGTPPRTLLASARRAACLLPLQEVLGEQMAQRGAVTL--------YTELEMP 502 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 + + D G VD ++ +D T + + + + ++L+ +F Sbjct: 503 VAACLAQMEDAGIAVDDSVLAAREVELDARVTHAAEAAFAAAGHEL-NLSSPKQLQAVIF 561 Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 E + T+ TT L++ P + +R + L +A+ Sbjct: 562 DELKMPKTRRTKRGYTTDAEALAALYAKTGHPFLEHLLEHRDAIKLRQT--VEGLRKAVL 619 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 +DGR+ T Q A+ TGR S QN+P + Sbjct: 620 ADGRIHTTFQQTVAA-TGRLSSTDPNLQNIPARTEEGMR--------------------- 657 Query: 360 ISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R +G++ L+ AD + IE R++A ++G+Q + AF +GEDL+ A Sbjct: 658 ----IREAFTVGQGQECLLTADYSQIEMRIMAHLSGDQALIDAFRSGEDLHRYVAAMVHG 713 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 + A VT +QR+ K M L Y T GL Sbjct: 714 IDVADVTAEQRSHVKAMSYGLAYGLS---------TYGL--------------------- 743 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 A + ++ A+ + V + + + Sbjct: 744 --------------ARQLGIDNAEASALRDAYFARFGAVHDYLESVVAQARR-------- 781 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 + GR D+ ++ R Sbjct: 782 ------------------DGWTQTMFGRRRYLPDLTSDN---RQRREMAERAALNAP--- 817 Query: 599 ENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH-LM 651 +Q + DI+ + M++ A ++L +HDE++ E + L M Sbjct: 818 ---IQGSAADIVKKAMIDVADALAESALASRVLLQIHDELLLEIAPGEAEAVEELVRARM 874 Query: 652 TSNPSWAKGLPLKAEGYESKRYR 674 + +PL +R Sbjct: 875 SGAAQ--LSVPLDVSVGRGATWR 895 >gi|314968099|gb|EFT12198.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA1] Length = 892 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 99/657 (15%), Positives = 183/657 (27%), Gaps = 135/657 (20%) Query: 34 AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 A D +D + + + L + D V H++ L ++ Sbjct: 349 AVALGGVDGNAVWFDAAELSLEDEDVFAAWLADKDRPKVMHSAKGPVEALAER-GWEVAG 407 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + + A K + + L Sbjct: 408 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 460 Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 R DV E E L E + ++ G VD + L Sbjct: 461 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266 D T+ QE G + ++L+ LF + + T++ T L+ Sbjct: 521 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579 Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + P + +R ++ L++ + DGR+ T A TGR S Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 636 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383 QN+P + +R + EG + L+ AD + Sbjct: 637 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 671 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q + AF++G+D + T + F VAP V+ QR+ K M Sbjct: 672 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 726 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 GL+ + + Sbjct: 727 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 747 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + + +V E L + +Q G Sbjct: 748 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 782 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622 GR D+ + R +Q + D++ M+ + Sbjct: 783 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 832 Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E +E + + M +PL + + Sbjct: 833 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 887 >gi|319789775|ref|YP_004151408.1| DNA polymerase I [Thermovibrio ammonificans HB-1] gi|317114277|gb|ADU96767.1| DNA polymerase I [Thermovibrio ammonificans HB-1] Length = 829 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 95/628 (15%), Positives = 178/628 (28%), Gaps = 149/628 (23%) Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 P+ L AL + V N L ++ + + Sbjct: 342 PREL-PALARGNKLYVF-NLK----ELYHTVGAELKKLKTFDISLGYYLLNP-------- 387 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L + L+ + H + + + G Y ++ Sbjct: 388 --LLKDYSPEQVIGNLLGAKVELPVHLHHGIKAGKEVEKKLKEEGLY---------RLYA 436 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 E L Y+ + RG L + ++ + ++++ ++ L + Sbjct: 437 ------EVEHPLSYVLYKMEKRGVPFSEKALMELERELEEKISEVETKIFELAG-EKFNL 489 Query: 234 RCLEKLKTWLFLETGLHLEDLT---ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF + GL T +T L++ + + + S+ Sbjct: 490 NSPKQLSKVLFEKLGLKPVKKTRSGYSTDVETLTTLALEGHEIAVHILDYRKLSKLLSSF 549 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L++ ++ GR+ G G + TGR S QNLP Sbjct: 550 VKALLKRIDETGRVHGNFIQTG-TATGRLSSAEPNLQNLP-------------------- 588 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +S VR V A EG LV AD + +E R+LA ++ ++ ++AF GED++ Sbjct: 589 -----VSDPLSLRVRRAVRAPEGYTLVWADYSQVELRILAHLSQDRNLIEAFLKGEDIHT 643 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T F+ + Sbjct: 644 ETAKHLFHT----------------------------------------------RQITD 657 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 NF + A + + + QK +V E + + + Sbjct: 658 RERRVAKTVNFGIIYGMSPHGLAERLSIPLQEAKDYIERYFQKFPKVREF---IEETVRE 714 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + G + GR ++ R Sbjct: 715 AYKKG-----------------------FVETAFGRRRPLPELKEKSF---HKRSFGERA 748 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYDIVLTVHDEIVCETPDTDEFNA-S 645 ++Q + DI+ M+N K I+L VHDE+V E P+ E + Sbjct: 749 A------VNTVIQGTAADIMKMAMVNLQPEAEKLNSYIILQVHDELVLEAPEGAEEEVAA 802 Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +M +PL E K + Sbjct: 803 KVKQVMEGAA--NLSVPLTVEVKSGKEW 828 >gi|51512060|gb|AAU05259.1| DNA-directed DNA polymerase [Enterobacteria phage T5] Length = 855 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 88/696 (12%), Positives = 179/696 (25%), Gaps = 157/696 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALE 62 + D ET Y D ++ + ++ D V L++ L+ Sbjct: 161 VAFDSETS----------ALYCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILD 210 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDI----PIHRWICTLVLARSNGL---PSALKAVGEA 115 + + TIV HN F+ K L R T++ LK++ Sbjct: 211 SENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 270 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 E + +CK + + + Y D T + Sbjct: 271 YTDMGDYDFELDKFKDDYCKAHKI---KKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFF 327 Query: 176 EPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE- 223 P K Q + DRG + + + K ++L Sbjct: 328 LPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREKLYT 387 Query: 224 -------SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTP 271 + +++L+ LF GL ++T L+ P Sbjct: 388 YPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELATQHP 447 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 A + R + ++ + ++ ++++DG +R + S Q LPR Sbjct: 448 IAKTLLEIR-KLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQLPR 506 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 ++ CVIA G +++ DL E A Sbjct: 507 D----------------------------ESIIKGCVIAPPGYRVIAWDLTTAEVYYAAV 538 Query: 392 MAGEQWKLKAFETGEDLYVTTYA------------RSFNVAPAQVTKDQRAIGKVMELAL 439 ++G++ + F + + ++ R K + + Sbjct: 539 LSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGI 598 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y G +N KT E Sbjct: 599 LYGSGPAKVAH-----SVNEALLEQAAKTGEPFVE-----------------------CT 630 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + + + ++ ++ H + + Sbjct: 631 VADAKEYIETYFGQFPQLKRWIDKCHDQIKN--------------------------HGF 664 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + GR ++ + + + I+Q+ S D L G ++A Sbjct: 665 IYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAVDADN 715 Query: 620 A--------GYDIVLTVHDEIVCETPDTDEFNASML 647 IV+ VHD +V + + + Sbjct: 716 EIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEI 751 >gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479] gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479] Length = 653 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 111/707 (15%), Positives = 208/707 (29%), Gaps = 192/707 (27%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKEA 60 L ID ET G+ +++ + L PV + DC +P LKE Sbjct: 99 LAIDTETT--------GLDPHSD--RLRLIQISAPGIPVLVIDCAA--FLPDGFACLKEL 146 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-----PSALKAVG-E 114 L + HN+ F+ L + I T++ A+ + L V Sbjct: 147 LNTPS-EKIFHNARFDLQFL---MGIGIDCFPVFDTMLAAQLLRPCGGPLKAGLAVVADH 202 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L + K E+ + G Y D + +++ Sbjct: 203 YLGIKLDKTEQTGSWDSASLTGSQ-------------------LAYAALDAWILLKLYDV 243 Query: 175 LEPLSSKE---------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 + PL ++ G +D+ L + + + + L + Sbjct: 244 MNPLLARHGLGRTASIEFACVSAIARTEYDGINLDLEKWDELRRKTEKQYDAALETLYTY 303 Query: 226 TYGL---------VSSSRCLEKLKTW---LFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273 + + + + L G+ + + + P Sbjct: 304 SGTPSCQLTLWGGEEALDVNFESNPYVLKLLNRYGIPVTSTSRRSLA-----PYHSQPLV 358 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + R + + L+ + ++ RL +GA +GR S Q +PR Sbjct: 359 QALTEYRRHSKSLSS-FLHPIPAQIHPVTHRLHPKYMQIGA-WSGRMSCYNPNIQQIPR- 415 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 RSC A +G+KL++AD + IE RV A + Sbjct: 416 ----------------------------EADFRSCFTAPDGRKLILADYSQIELRVAAQI 447 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G+ A + GEDL+ T + ++ +QVTK QR K + L + GA+ ++ A Sbjct: 448 SGDSRMKSACQKGEDLHALTASLISSIPVSQVTKAQRQAAKAVNFGLIFGMGAEGLKQYA 507 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + E+ + A+ Q Sbjct: 508 --------------------------------------GQSYGVEMTLEEAEQFRSAFFQ 529 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + ++ ++L ++ + L +GR Sbjct: 530 SYRGINWWHHDL----------------------------RESHPLEGRTLTGRKF---- 557 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYDIVLTV 628 + + + L L VQ + DIL + + IV V Sbjct: 558 LFSPNTGL--------------ADLANTPVQGTAADILKHALGLLASRIRGSDKKIVAIV 603 Query: 629 HDEIVCETP-DTDEFNASMLYHLMTSNPS-WAKGLPLKAEGYESKRY 673 HDEI+ E P + + +L M +P +A+ + + Sbjct: 604 HDEILMEVPVEEADDTVVLLKTAMEEAAQAILPDVPCEADAKAADSW 650 >gi|46401858|ref|YP_006950.1| DNA polymerase [Enterobacteria phage T5] gi|45775036|gb|AAS77168.1| DNA polymerase [Enterobacteria phage T5] Length = 855 Score = 258 bits (659), Expect = 3e-66, Method: Composition-based stats. Identities = 87/696 (12%), Positives = 179/696 (25%), Gaps = 157/696 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALE 62 + D ET Y D ++ + ++ D V L++ L+ Sbjct: 161 VAFDSETS----------ALYCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILD 210 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDI----PIHRWICTLVLARSNGL---PSALKAVGEA 115 + + TIV HN F+ K L R T++ LK++ Sbjct: 211 SENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 270 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 E + +CK + + + Y D T + Sbjct: 271 YTDMGDYDFELDKFKDDYCKAHKI---KKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFF 327 Query: 176 EPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE- 223 P K Q + DRG + + + K ++L Sbjct: 328 LPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREKLYT 387 Query: 224 -------SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTP 271 + +++L+ LF GL ++T L+ P Sbjct: 388 YPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELATQHP 447 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 A + R + ++ + ++ ++++DG +R + S Q LPR Sbjct: 448 IAKTLLEIR-KLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQLPR 506 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 ++ CV+A G +++ DL E A Sbjct: 507 D----------------------------ESIIKGCVVAPPGYRVIAWDLTTAEVYYAAV 538 Query: 392 MAGEQWKLKAFETGEDLYVTTYA------------RSFNVAPAQVTKDQRAIGKVMELAL 439 ++G++ + F + + ++ R K + + Sbjct: 539 LSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGI 598 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y G +N KT E Sbjct: 599 LYGSGPAKVAH-----SVNEALLEQAAKTGEPFVE-----------------------CT 630 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + + + ++ ++ H + + Sbjct: 631 VADAKEYIETYFGQFPQLKRWIDKCHDQIKN--------------------------HGF 664 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + GR ++ + + + I+Q+ S D L G ++A Sbjct: 665 IYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAVDADN 715 Query: 620 A--------GYDIVLTVHDEIVCETPDTDEFNASML 647 IV+ VHD +V + + + Sbjct: 716 EIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEI 751 >gi|254384234|ref|ZP_04999578.1| DNA polymerase I [Streptomyces sp. Mg1] gi|194343123|gb|EDX24089.1| DNA polymerase I [Streptomyces sp. Mg1] Length = 906 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 93/623 (14%), Positives = 170/623 (27%), Gaps = 132/623 (21%) Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 V HN+ V + T + A + L ME Sbjct: 397 SKPKVVHNAKGLMRVFPEH-GWSLAGVAM-DTALAAYLVKPGR------RSFALDVLSME 448 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKE 182 + + D + GD T + + E Sbjct: 449 YLHRELQPAAQDGQLAFGSDDTAEAEALMAQARAVLDLGDA-FTGRLAEVGAAELLHEME 507 Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 L + G D + Q + +E + + ++L+ Sbjct: 508 LPTSELLARMERAGIAADRDHLEAMEQQFAGAVQQAVKEAHAAVGH-EFNLGSPKQLQEV 566 Query: 243 LFLETGLHLEDLTETT---CQRVLSSNK-KLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 F E L T+T L+ + + + ++ V + LV+ + Sbjct: 567 FFGELDLPKTKKTKTGYTTDADALAWLATQTDHELPVIMLRHREQAKLRVT-VEGLVKTI 625 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +DGR+ + + A+ TGR S QN+P + Sbjct: 626 GADGRVHTSFSQIVAA-TGRLSSTDPNLQNVPVRTDEGRA-------------------- 664 Query: 359 IISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R + EG + L+ AD + IE RV+A ++ ++ ++AF +GEDL+ T ++ F Sbjct: 665 -----IRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFLSGEDLHTTVASQVF 719 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 V +V + R K M L GL+ + + + Sbjct: 720 GVERGEVDPEMRRKIKAMSYGL--------------AYGLSAFGLSQQLNID-------- 757 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 + + + ++ V + L + E+ G Sbjct: 758 ----------------------PGEARGLMETFFERFGGVRDY---LQRVVEEARATGYT 792 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 GR D+ ++ R Sbjct: 793 QTVL-----------------------GRRRYLPDLNSDNRMRR---EAAERMALNAP-- 824 Query: 598 TENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HL 650 +Q + DI+ M+ KA ++L VHDEIV E + L Sbjct: 825 ----IQGTAADIVKVAMLRVDKAITEAGLKSRMLLQVHDEIVLEIAPGERKKVEELVRRE 880 Query: 651 MTSNPSWAKGLPLKAEGYESKRY 673 M + PL + Sbjct: 881 MGAAVE--LRAPLDVSVGVGPDW 901 >gi|299822773|ref|ZP_07054659.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601] gi|299816302|gb|EFI83540.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601] Length = 903 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 89/653 (13%), Positives = 180/653 (27%), Gaps = 117/653 (17%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACF 84 +I A D + + + + T + ++ V Sbjct: 357 ADIIGVAISSDKGNFYY--SAATIQNSTAFADWISDPNQTK----AVYDAKKTMVTLNRL 410 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 L ++ + + E EL+ F KG + + Sbjct: 411 GLPCEGI-LFDFMLASYVLDPSQTIDDFASVASRYDYTQVEADELV--FGKGAKYNVPDE 467 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 +H + + V + E ++LE + + E L ++ + G VD Sbjct: 468 TKVADHLARKAVAIAKLEQTVNESLEKNEQLELVDNLELPLTFVLAKMEMEGVRVDTERL 527 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261 + + V ++ + L + ++L LF GL T+ +T Sbjct: 528 EEMKSEMAVRLQTIESSIHELAGTT-FNINSPKQLGVILFETLGLPPVKKTKTGYSTAAD 586 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL S P ++ R + + L++ + T ++TGR S Sbjct: 587 VLESLSGKHPIIDEILLYRQ-LGKLQSTYVEGLLKVTDKKTSKVHTRFNQTLTQTGRLSS 645 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVAD 380 QN+P + +R + S G K+ AD Sbjct: 646 VDPNLQNIPIRLEEGRK-------------------------IRQVFVPSHPGWKMFSAD 680 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + +E RVLA ++ ++ + AF D++ T F+V+ A+V R K + + Sbjct: 681 YSQVELRVLAHISQDENLVYAFRNDYDIHTKTAMDVFHVSEAEVDSLMRRQAKAVNFGIV 740 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L + A + + D + + + + E + + Sbjct: 741 YGIS-----DYGLSQNLGITRKAAKDFIDRYFASYPDVKVYMEEIVRSAKEKGYVETILH 795 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R ++ V + T G A K+ + + + + Sbjct: 796 R--RRYIPEITSRNFNVRSF---AERTAMNTPIQGSAADIIKQAMLLMDERLESEQMEAK 850 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 +L V + + +I Sbjct: 851 LLL--------QVHDELIFEAPE-----------------------AEIAKLA------- 872 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 EI PD +M + A +PLK + + Sbjct: 873 ----------EI---VPD-----------VMENAV--ALSVPLKVDSAHGDSW 899 >gi|323443494|gb|EGB01110.1| hypothetical protein SAO46_0719 [Staphylococcus aureus O46] Length = 330 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 117/334 (35%), Positives = 169/334 (50%), Gaps = 19/334 (5%) Query: 6 IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58 ID E S D++KCG KY AED +++ A+ D PV D P + K Sbjct: 3 IDIEIYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPYHADYETFK 62 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L+L Sbjct: 63 IALFDPAVKKCAFNANFERTCLAKHFNKSMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 +QK + GK LI F CK RN P H E W+ F +YC DV V I + Sbjct: 123 QNQKDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVEVEMAIANK 182 Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ + EQ+ W DQ INDRG + +L N + + +L ++ + +T + + Sbjct: 183 IKDFPVTTIEQKYWVFDQHINDRGIKLSKSLMLGANVLDKQSKGELLKQAKQITD--LEN 240 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L TWL E GL + +L + T Q L K+ T +A ++ R++ S+++V K N Sbjct: 241 PNSPTQLLTWLNKEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + + M SD R+RG QF GA TGRW+G Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQL 330 >gi|296395192|ref|YP_003660076.1| DNA polymerase I [Segniliparus rotundus DSM 44985] gi|296182339|gb|ADG99245.1| DNA polymerase I [Segniliparus rotundus DSM 44985] Length = 903 Score = 257 bits (657), Expect = 4e-66, Method: Composition-based stats. Identities = 110/675 (16%), Positives = 198/675 (29%), Gaps = 141/675 (20%) Query: 20 GICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVAHNSYF 75 G + L A D HD L L + H + + Sbjct: 344 GGTPLKDGGRAWLIAVASPDGSGAAIKTEALTAHD---TAALGAWLADPAAPKAFHEAKW 400 Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVG-EALKLSSQKMEEGKELIA 131 L I + A L + L+ + G++ ++ Sbjct: 401 AAHAL-RGQGFSIA-GVTTDIGLAAYIARPGQRSFQLPDLAVRYLRRQLGPDDSGQKQLS 458 Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191 + + A R GE DV + L + E L ++ Sbjct: 459 LLDAEQDDNAEANGAVSEAA-AIRELGE-ALDDV---LAKAGSADLLHTMELPLTFVLGA 513 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + + G VD L+ + + ++ + + ++L+ LF E G+ Sbjct: 514 MEEAGIAVDQDALAGLHADFSARVQQAAESAYAVIGKEI-NLGSPKQLQVVLFDELGMPK 572 Query: 252 EDLTETT---CQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T+T L + P + +R A+R L++A+ DGR+ Sbjct: 573 TKKTKTGHTTDADALQWLFERTEHPFLSHLLEHR-DATRLMTT-AQGLIKAVGPDGRIHT 630 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 T + A+ TGR S QN+P + +R Sbjct: 631 TFRQDVAA-TGRLSSTDPNLQNIPVRTEEARR-------------------------IRG 664 Query: 367 CVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + EG + L+ AD + IE R++A ++G++ ++AF TGEDL+ +R+F V QV Sbjct: 665 VFVVGEGHEALMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNFVASRAFGVPIDQVG 724 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 + R K M L GL+ A Sbjct: 725 AELRRRVKAMSYGL--------------AYGLSAFGLAQQ-------------------- 750 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 G + +A+ + V + E+ E+ G Sbjct: 751 ----------LGVSGEEAKAQMEAYFARFGGVRDYLREV---VEEARRKGYTETL----- 792 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 GR D+ ++ R +Q Sbjct: 793 ------------------FGRRRYLPDLTSDNQ---QQRAVAERAALNAP------IQGS 825 Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + DI+ M++ +A ++L VHDE+V E + ++ + L M S Sbjct: 826 AADIIKVAMIHVAEALAARNMRSRMLLQVHDELVLEVAEGEQDELAALVAEQMGSAIE-- 883 Query: 659 KGLPLKAEGYESKRY 673 +P+ + Sbjct: 884 LSVPMDVSVGFGPNW 898 >gi|50842261|ref|YP_055488.1| DNA polymerase I [Propionibacterium acnes KPA171202] gi|50839863|gb|AAT82530.1| DNA polymerase I [Propionibacterium acnes KPA171202] Length = 931 Score = 257 bits (657), Expect = 4e-66, Method: Composition-based stats. Identities = 98/657 (14%), Positives = 181/657 (27%), Gaps = 135/657 (20%) Query: 34 AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 A D +D + + L + D H++ L ++ Sbjct: 388 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAER-GWEVAG 446 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + + A K + + L Sbjct: 447 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 499 Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 R DV E E L E + ++ G VD + L Sbjct: 500 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 559 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266 D T+ QE G + ++L+ LF + + T++ T L+ Sbjct: 560 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 618 Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + P + +R ++ L++ + DGR+ T A TGR S Sbjct: 619 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 675 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383 QN+P + +R + EG + L+ AD + Sbjct: 676 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 710 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q + AF++G+D + T + F VAP V+ QR+ K M Sbjct: 711 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 765 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 GL+ + + Sbjct: 766 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 786 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + + +V E L + +Q G Sbjct: 787 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 821 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622 GR D+ + R +Q + D++ M+ + Sbjct: 822 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 871 Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E +E + + M +PL + + Sbjct: 872 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 926 >gi|317154192|ref|YP_004122240.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2] gi|316944443|gb|ADU63494.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2] Length = 887 Score = 257 bits (656), Expect = 4e-66, Method: Composition-based stats. Identities = 93/594 (15%), Positives = 169/594 (28%), Gaps = 137/594 (23%) Query: 92 RWICTLVLARSNGLPSALKAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 +W + A + L E EL A + Sbjct: 415 QWFDLSLAAYLLDPEARNYTWPRLRQSLFQDGRSEFAELAATLHPKARGLAALAYMRGIR 474 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 + D+ + + ++ G VD+ Sbjct: 475 GQVESAHLSTLMRDLEIPL----------------IPVLVSMEQAGIGVDLDAFAGFLDD 518 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266 V + +L + + + R ++L LF + + + T +T +VL + Sbjct: 519 VSTQLDELTRSIIRHAG-EPFNIRSSQQLAAILFDKLDIKEGNKTATGQRSTANQVLEAI 577 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + P + R + L L + + D RL L A+ TGR S Sbjct: 578 RSRHPIVEDILEYR-MLEKLRSTYLEPLPKLVGEDSRLHTHFNQL-ATATGRLSSSQPNL 635 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P + +R+C IA G L AD + IE Sbjct: 636 QNIPIRGKHGPR-------------------------MRACFIAGPGAMLAAADYSQIEL 670 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA +G+ + AF ED++ T A + P V D+R K + Sbjct: 671 RVLAHFSGDPALIDAFRNDEDIHTRTAALLTDKQPQDVLADERRNAKTINF--------- 721 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G+ A + + Sbjct: 722 -----GLIYGMGPQKLARELDI------------------------------TVNQAKEF 746 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + + K + + ++ + + +G GR Sbjct: 747 IERYFDKLATLKAYYDTI---VKDAESHGFVTTLA-----------------------GR 780 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------A 620 + ++ + + Q R+ ++Q + DI+ M+ A K Sbjct: 781 RRLLPELHSRNT---QLVSQARRQA------VNTVIQGSAADIIKMAMVAAHKDKDLAAL 831 Query: 621 GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 G ++L VHDE++ E P+ A L +M S A +PLK + + + Sbjct: 832 GAHVILQVHDELIIEAPEASIRPAGERLKTIMQSVADLA--VPLKVDLGLGRTW 883 >gi|309805236|ref|ZP_07699288.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c] gi|308165470|gb|EFO67701.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c] Length = 439 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 77/543 (14%), Positives = 157/543 (28%), Gaps = 131/543 (24%) Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVA 202 + V V ++ ++ P + + + + + G V Sbjct: 2 DVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQAT 61 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + +DV T L ++ L + ++L LF + L T+ +T Sbjct: 62 TLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFDKLKLTPAKKTKTGYSTS 120 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + +P + + R S+ +N L++ + +DG++ + TGR Sbjct: 121 VDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRFLQ-TLTTTGRL 178 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378 S QN+P + +R + + L Sbjct: 179 SSVEPNLQNIPVKLEEGK-------------------------QIRKAFVPCKQDSYLFS 213 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMEL 437 D + +E RVLA ++ E+ L+AF+ G D++ T + F ++ +VT R K + Sbjct: 214 CDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVN- 272 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 G++ A Sbjct: 273 -------------FGIVYGISD------------------------------YGLAKNLG 289 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + +++ ++ + A + E G A Sbjct: 290 ISRQEAQNFINNYFEQYPQIKDYMK---AAVKLAREKGYAETIMH--------------- 331 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R + D+ N R +Q + DI+ M+ Sbjct: 332 --------RRRLLPDIHNKNF---NIRSFAERTAINSP------IQGSAADIIKIAMIKM 374 Query: 618 T------KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYES 670 K ++L +HDE++ + P + L +M +PL A+ Sbjct: 375 QSELEQRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQAAQ--LDVPLIADANWG 432 Query: 671 KRY 673 + Sbjct: 433 HNW 435 >gi|317509158|ref|ZP_07966782.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974] gi|316252515|gb|EFV11961.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974] Length = 904 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 109/664 (16%), Positives = 198/664 (29%), Gaps = 140/664 (21%) Query: 31 ILFAFGFDDHPVELWDCVHDPVM-PQVLKE---ALENTDVTIVAHNSYFERTVLKACFNL 86 L A D M P+ ++ L + V H + + L Sbjct: 355 WLVAIAGADGHGAAI---RTETMTPEDVRALDGWLADPAVPKAFHEAKWATHAL-RGGGF 410 Query: 87 DIPIHRWICTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECL 142 T + A L + L+ + G++ ++ + Sbjct: 411 AEIAGVTTDTGLAAYIARPGQRSFNLPDLALRYLRRQLGPEDGGEKQLSLLDDSTGEDKE 470 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 D + L G DV + + L + E L ++ + + G VD Sbjct: 471 ADDSITEAAAIRELGG--ALDDV---LDKAGSADLLRTMELPLTFVLARMEEAGIAVDQD 525 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---C 259 L+ + + S+ + + ++L+ LF E G+ T+T Sbjct: 526 GLAGLHADFAARVKQAAESAYSVIGKEI-NLGSPKQLQVVLFDELGMPKTKKTKTGHTTD 584 Query: 260 QRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 L K P + + +R A+R L++A+ DGR+ T + A+ TG Sbjct: 585 ADALQWLFEKTEHPFLLYLLEHR-DATRLMTT-AQGLIKAIGPDGRIHTTFRQDVAA-TG 641 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-L 376 R S QN+P + +R + EG + L Sbjct: 642 RLSSTDPNLQNIPVRTDEARR-------------------------IRGVFVVGEGHEAL 676 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R++A ++G+ ++AF TGEDL+ +R+F V +V + R K M Sbjct: 677 MTADYSQIEMRIMAHLSGDDGLIEAFRTGEDLHNFVASRAFGVPIDEVGAELRRRVKAMS 736 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 L GL+ A + Sbjct: 737 YGL--------------AYGLS------------------------------AFGLASQL 752 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 G + A+ + V + + + E+ G Sbjct: 753 GVSGEEAKAQMDAYFARFGGVRDYLHAV---VEEARRKGYTETL---------------- 793 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 GR D+ ++ R +Q + DI+ M++ Sbjct: 794 -------FGRRRYLPDLTSDNQ---QQRAVAERAALNAP------IQGSAADIIKVAMIH 837 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 +A ++L VHDE+V E D + + L M S +P+ Sbjct: 838 VAEALAEREMRSRMLLQVHDELVLEVADGEREELAALVSEQMGSAIELL--VPMDVSVGF 895 Query: 670 SKRY 673 + Sbjct: 896 GANW 899 >gi|315098282|gb|EFT70258.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA2] Length = 892 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 100/657 (15%), Positives = 183/657 (27%), Gaps = 135/657 (20%) Query: 34 AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 A D +D + + L + D V H++ L ++ Sbjct: 349 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAER-GWEVAG 407 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + + A K + + L Sbjct: 408 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 460 Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 R DV E E L E + ++ G VD + L Sbjct: 461 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266 D T+ QE G + ++L+ LF + + T++ T L+ Sbjct: 521 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579 Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + P + +R ++ L++ + DGR+ T A TGR S Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 636 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383 QN+P + +R V+ EG + L+ AD + Sbjct: 637 NLQNIPMRTEEGRR-------------------------IREGVVVGEGYESLLSADYSQ 671 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q + AF++G+D + T + F VAP V+ QR+ K M Sbjct: 672 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 726 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 GL+ + + Sbjct: 727 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 747 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + + +V E L + +Q G Sbjct: 748 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 782 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622 GR D+ + R +Q + D++ M+ + Sbjct: 783 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 832 Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E +E + + M +PL + + Sbjct: 833 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 887 >gi|282862068|ref|ZP_06271131.1| DNA polymerase I [Streptomyces sp. ACTE] gi|282563093|gb|EFB68632.1| DNA polymerase I [Streptomyces sp. ACTE] Length = 903 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 96/644 (14%), Positives = 176/644 (27%), Gaps = 135/644 (20%) Query: 46 DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 D Q L + + V HN+ V + T + A Sbjct: 374 PAELDEADEQALAAWIADPRRPKVMHNAKNALRVFPEQ-GWRLEGVSM-DTALAAYLVKP 431 Query: 106 PS---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 AL A+ E L +A + F Sbjct: 432 GRRSFALDALAVEYLGRELAPAPSADGQLAFGADDRAEADALMAQARAVLDLGEAFAVRL 491 Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + V T + E L + G D + + Q + +E Sbjct: 492 EE-VGATGLLH-------DMELPTSILLARLERHGIAADRSHLEGMEQQFAGAVQQAVKE 543 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK----KLTPQAIQVF 277 + + ++L+ LF E L T+T + + + + Sbjct: 544 AHAAVG-REFNLGSPKQLQEVLFGELALPKTKKTKTGFTTDADALAWLAAQTEHELPVIM 602 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 ++ V + L++ + DGR+ T A+ TGR S QN+P + Sbjct: 603 LRHREQAKLRVT-VEGLIKTIGQDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEGR 660 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQ 396 +R + EG L+ AD + IE RV+A ++ + Sbjct: 661 A-------------------------IRRGFVVGEGFETLMTADYSQIELRVMAHLSEDA 695 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF +GEDL+ T ++ F V + V + R K M L Y G Sbjct: 696 GLIEAFTSGEDLHTTVASQVFGVDKSAVDAEMRRKIKAMSYGLAY--------------G 741 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L+ + + ++ + + Q+ Sbjct: 742 LSAFGLSQQLNIDAG------------------------------EARGLMDTYFQRFGG 771 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + + + + T GR D+ ++ Sbjct: 772 VRDYLHRVVEEARAT--------------------------GYTETILGRRRYLPDLNSD 805 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHD 630 R +Q + DI+ M++ +A ++L VHD Sbjct: 806 N---RQRREAAERMALNAP------IQGTAADIVKVAMLHVDRALTEARLTSRMLLQVHD 856 Query: 631 EIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 EIV E + + M++ PL + + Sbjct: 857 EIVLEIAAGEREQVEEILRREMSTAVE--LRAPLDVSVGVGRDW 898 >gi|325674214|ref|ZP_08153903.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707] gi|325554894|gb|EGD24567.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707] Length = 912 Score = 257 bits (656), Expect = 6e-66, Method: Composition-based stats. Identities = 103/667 (15%), Positives = 187/667 (28%), Gaps = 140/667 (20%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT-DVTIVAHNSYFERTVLKACFNL 86 V A D + H + L Sbjct: 360 GDVTAVAIAAPDGEGAYISTTTATPEDEAALADWLADAGRPKALHEAKRAMHAL-RGRGW 418 Query: 87 DIPIHRWICTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGK---ELIARFCKGETH 139 + T + A L + LK + E G+ L+ + Sbjct: 419 TLAGLT-SDTALAAYLVRPGQRSFNLDDLSLRYLKRELRVEESGQQQLSLLDDEDAADAE 477 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 + + + D+ T + E L + + G V Sbjct: 478 AAEGEILRSRAVLDLAAALDTELADIEATGLLA-------DMELPLLEVLANLESTGIAV 530 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT- 258 D H L + + ++ + + ++L+ LF E + T+T Sbjct: 531 DTTHLHDLQSAFAARVAEAAEAAYAVIGKQI-NLGSPKQLQVVLFDELDMPKTKKTKTGY 589 Query: 259 --CQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 L S K P + +R A+R V ++ L++ + DGR+ T A+ Sbjct: 590 TTDADALQSLFEKTQHPFLEHLLEHR-DATRLKVT-VDGLLKTVAEDGRIHTTFNQTVAA 647 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374 TGR S QN+P + + +R + EG Sbjct: 648 -TGRLSSTEPNLQNIPVRTDAGR-------------------------QIRDGFVVGEGY 681 Query: 375 -KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 L+ AD + IE R++A ++G+ ++AF TGEDL+ +R+F V +VT + R K Sbjct: 682 ETLLTADYSQIEMRIMAHLSGDAGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVK 741 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 M L GL+ A +K Sbjct: 742 AMSYGL--------------AYGLSAFGLAAQLKI------------------------- 762 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + A+ + V + +E+ + + Sbjct: 763 -----STEEARQQMDAYFARFGGVRDYLHEVVEQARK----------------------- 794 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 GR D+ ++ R +Q + DI+ Sbjct: 795 ---VGYTETLFGRRRYLPDLNSDN---RQRREVAERAALNAP------IQGTAADIIKVA 842 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 M++ +A ++L VHDE+V E + L M + +PL+ Sbjct: 843 MIDVQRALREAGLASRMLLQVHDELVLEVAAGERERVEQLVREKMAAAID--LSVPLEVS 900 Query: 667 GYESKRY 673 + + Sbjct: 901 VGTGRSW 907 >gi|269976595|ref|ZP_06183580.1| DNA polymerase [Mobiluncus mulieris 28-1] gi|269935396|gb|EEZ91945.1| DNA polymerase [Mobiluncus mulieris 28-1] Length = 352 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 114/392 (29%), Positives = 172/392 (43%), Gaps = 60/392 (15%) Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 + V + + + + R SRS+V K +++ +D R G LQF GA+RTGRW Sbjct: 4 ESVDDALVSASGEVKEALELRQELSRSSVAKYRKMIDVTCTDQRAHGLLQFYGANRTGRW 63 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSI---TSDPDPLQIISDCVRSCVIASEGKKL 376 +G + QNLPR + + +S +R+ I S+G + Sbjct: 64 AGRLVQVQNLPRNYLPDLAQARSLVRDGNGETLEMLYSSVPDTLSQLIRTAFIPSKGHRF 123 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKV 434 +VAD + IEARVLAW+AGE+ L AF+ GEDLY T + F V + + R GK+ Sbjct: 124 IVADYSAIEARVLAWLAGEETTLAAFKNGEDLYCATASAMFGVPVEKHGVNSELRQKGKI 183 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 LA GY G A + M A+ Sbjct: 184 AVLACGYNGSVGALKAMG----------------------------------------AL 203 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + + + AWR + + +LW+++ A + I G+ + + +K Sbjct: 204 KMGLSEDELQPIVDAWRAANPNIVQLWHDVDNAATRAISTGRPVTLG------NLGFEKK 257 Query: 555 KNNLILMLPSGRSLVY--RDVGNNRSYLNTTT-------RQLTREYTYGGKLTENIVQAV 605 L + LPSGR L Y +G NR + T R+ + TYGGKL ENIVQA Sbjct: 258 SGMLFINLPSGRRLAYVKPGIGMNRFGGTSITYWGQGVARKWQKLETYGGKLVENIVQAT 317 Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 +RD+L E + AG+ IV+ +HDE+V + P Sbjct: 318 ARDLLVEAITRIENAGHRIVMHIHDEVVIDEP 349 >gi|313813190|gb|EFS50904.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1] Length = 890 Score = 256 bits (655), Expect = 7e-66, Method: Composition-based stats. Identities = 98/657 (14%), Positives = 181/657 (27%), Gaps = 135/657 (20%) Query: 34 AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 A D +D + + L + D H++ L ++ Sbjct: 347 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAER-GWEVAG 405 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + + A K + + L Sbjct: 406 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 458 Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 R DV E E L E + ++ G VD + L Sbjct: 459 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 518 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266 D T+ QE G + ++L+ LF + + T++ T L+ Sbjct: 519 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 577 Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + P + +R ++ L++ + DGR+ T A TGR S Sbjct: 578 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 634 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383 QN+P + +R + EG + L+ AD + Sbjct: 635 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 669 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q + AF++G+D + T + F VAP V+ QR+ K M Sbjct: 670 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 724 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 GL+ + + Sbjct: 725 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 745 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + + +V E L + +Q G Sbjct: 746 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 780 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622 GR D+ + R +Q + D++ M+ + Sbjct: 781 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 830 Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E +E + + M +PL + + Sbjct: 831 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 885 >gi|315107096|gb|EFT79072.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1] gi|327330634|gb|EGE72380.1| DNA polymerase I [Propionibacterium acnes HL097PA1] Length = 892 Score = 256 bits (655), Expect = 7e-66, Method: Composition-based stats. Identities = 98/657 (14%), Positives = 181/657 (27%), Gaps = 135/657 (20%) Query: 34 AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 A D +D + + L + D H++ L ++ Sbjct: 349 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAER-GWEVAG 407 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + + A K + + L Sbjct: 408 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 460 Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 R DV E E L E + ++ G VD + L Sbjct: 461 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266 D T+ QE G + ++L+ LF + + T++ T L+ Sbjct: 521 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579 Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + P + +R ++ L++ + DGR+ T A TGR S Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 636 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383 QN+P + +R + EG + L+ AD + Sbjct: 637 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 671 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q + AF++G+D + T + F VAP V+ QR+ K M Sbjct: 672 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 726 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 GL+ + + Sbjct: 727 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 747 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + + + +V E L + +Q G Sbjct: 748 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 782 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622 GR D+ + R +Q + D++ M+ + Sbjct: 783 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 832 Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E +E + + M +PL + + Sbjct: 833 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 887 >gi|329769116|ref|ZP_08260537.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325] gi|328839462|gb|EGF89039.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325] Length = 879 Score = 256 bits (654), Expect = 1e-65, Method: Composition-based stats. Identities = 71/604 (11%), Positives = 159/604 (26%), Gaps = 143/604 (23%) Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 + + S + L E + Sbjct: 394 GDVFDIKIANYLIDVTSKSEIDKIVFNY----------LGEIISSNEEIYGKGAKRSLPT 443 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVD 200 +E Y E+ + +E ++ + + G V Sbjct: 444 QEVLN---SYIAKIAASILEVKPLMIKSLEEENMLDLYKNIEIKVARVLANMEFEGIHVS 500 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 ++ D L+ + +L + ++L LF + GL + T+ + Sbjct: 501 KKALDEMSHEFDERIKVLEGSIYTLAGS-EFNIASPKQLGVVLFEDLGLPVVKKTKTGYS 559 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL + + R ++ LV+ + +G++ + ++TG Sbjct: 560 TAVEVLEQLQYKHDIIPLIMEYR-TLTKLNSTYAKGLVKDITREGKIHTRYEQ-TLTQTG 617 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKL 376 R S QN+P ++ +R I S + + Sbjct: 618 RLSSVNPNLQNIPTRIEEGKK-------------------------IRKAFIPASNDRVI 652 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + D + IE RVLA +A ++ + AF+ D++ T + V +VT R K + Sbjct: 653 LSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKTASDVNGVPLDEVTPTMRREAKAVN 712 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + G++ ++ Sbjct: 713 FGIV--------------YGISDFGLSN------------------------------NL 728 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + + + V + ++ + ++ Sbjct: 729 GITRKRAKEFIEKYLETFKGVDKYMTDIVKFAKE-------------------------- 762 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 + + R ++ + +Q + DI+ M++ Sbjct: 763 HGYVETLYNRRRSLPEINAKNKII---------ANLNARIAMNTPIQGTAADIIKIAMIS 813 Query: 617 AT------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYE 669 A K ++L VHDE++ + + +M + LKAE Sbjct: 814 AYNYIEESKVDAKLLLQVHDELIFDVSKDILEEFTDKMVAIMEEAA--NLDVKLKAEASS 871 Query: 670 SKRY 673 + Sbjct: 872 GPSW 875 >gi|283769054|ref|ZP_06341960.1| DNA-directed DNA polymerase [Bulleidia extructa W1219] gi|283104411|gb|EFC05788.1| DNA-directed DNA polymerase [Bulleidia extructa W1219] Length = 862 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 75/592 (12%), Positives = 164/592 (27%), Gaps = 139/592 (23%) Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW--------RLFGEY 160 L+ G L S M + + + + + + E + Y Sbjct: 379 LEKNGIYLNFSDDVMIYTSLVDSTITSFKKLKEKSEWQETIRYEEVYKKEELIEKNQAAY 438 Query: 161 CKG------DVTVTREIFKRLEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLN 208 C V + +L+ ++ E L + + + +G + + + Sbjct: 439 CASVLRNLIQVDQEY--YPKLKEMNLISLYRDVELPLVTILKDMEQKGIRCEEKVLDHIA 496 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268 + + +L++ + + + ++L L+ E + +T L + Sbjct: 497 EGTLAKIQELEKAIYKVVGH-EFNLNSPKQLAVVLYDELQILKGKKR-STAAGELEKIQG 554 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 L + R + S+ L + + +DG++ A++TGR S QN Sbjct: 555 LYTVVDDILAYR-KYSKLYSTYAEGLKKYIQADGKIHTVYNQA-ATQTGRLSSSEPNLQN 612 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 + E +R + EG LV +D +E R+ Sbjct: 613 ISVRDEEGRE-------------------------IRKAFLPEEGCVLVSSDYHQVELRI 647 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA MA +KAF+ D++ T F+ + +VT QR K + + Sbjct: 648 LAHMAKVPNLIKAFQNEMDIHSQTAMDLFDCSLEEVTPLQRRQAKTVNFGIV-------- 699 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 G++ A + Sbjct: 700 ------YGISDFGLASQ------------------------------LGVSRFEARDFIE 723 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + + + + + ++ N + R Sbjct: 724 KYYRVYPEIKTYMESVIHFCKE--------------------------NGYVETLCHRRR 757 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGY 622 ++ + R +Q + D++ M+ Sbjct: 758 EIPEIHDKN---KQIQAFGERAAMNAP------IQGTAADLIKLAMIQVREMIDENHLKA 808 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ P + + M + S +PL +E + + Sbjct: 809 KMILQVHDELIFNVPLEEVEIMKTIIQKGMETAMS--LDVPLTSEISIGQTW 858 >gi|284031021|ref|YP_003380952.1| DNA polymerase I [Kribbella flavida DSM 17836] gi|283810314|gb|ADB32153.1| DNA polymerase I [Kribbella flavida DSM 17836] Length = 901 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 94/638 (14%), Positives = 174/638 (27%), Gaps = 151/638 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPSALKAVGEALKLS 119 L + H++ L L + T + A + Sbjct: 385 LADPQQPKALHDAK---GPLLGFLELGWTLAGLTSDTQLSAYLARPDQRSYDLA------ 435 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHRE------AWRLFGEYCKGDV----TVTR 169 + L E + D+ Sbjct: 436 ---DLTVRYLRRELRNEEADNG----QLSFDDVEGGPAADATMLRARAIADLADTLDAEL 488 Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 L+ E L + + G VD L + + Sbjct: 489 AKQAGTALLADVELPLIDVIAAMERDGIAVDRPYLEKLEERFATGVRDAATSAYEVIGKE 548 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN--KKLTPQAIQVFNNRMRAS 284 + + ++L+ LF E + T+T T L + K P + +R A+ Sbjct: 549 I-NLGSPKQLQVVLFDELQMPKTKRTKTGYTTDADSLQALFEKTEHPFLAYLLAHR-DAT 606 Query: 285 RSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R + L++ ++ D R+ T A+ TGR S QN+P + Sbjct: 607 RLRQT-VEGLLKTISPRDARIHTTFNQTIAA-TGRLSSTDPNLQNIPIRTEEGRR----- 659 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAF 402 +R + EG + L+ AD + IE R++A ++ ++ + AF Sbjct: 660 --------------------IREAFVVGEGYESLMSADYSQIEMRIMAHVSEDEGLIDAF 699 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 +GED + T AR F+V P +VT++ RA K M L GL+ Sbjct: 700 NSGEDFHSVTAARVFSVQPGEVTQEMRAKIKAMNYGL--------------AYGLSAYGL 745 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + +K + + + ++ V + Sbjct: 746 SQQLKI------------------------------GVDEAKGLMDEYFERFGGVRDYLR 775 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + + ++G GR D+ ++ Sbjct: 776 SI---VIEAGKSGYTETIL-----------------------GRRRYLPDLTSDN---RQ 806 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCET 636 R +Q + D++ M+ ++L VHDE+V E Sbjct: 807 RREMAERMALNAP------IQGSAADVIKLAMLKVDASLRSSGLKSRMLLQVHDELVFEI 860 Query: 637 PDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 + L M S A +PL + + Sbjct: 861 APGEREALEELVRRDMGSAVEMA--VPLDVSVGVGRTW 896 >gi|68075407|ref|XP_679621.1| POM1 [Plasmodium berghei strain ANKA] gi|56500410|emb|CAH98073.1| POM1, putative [Plasmodium berghei] Length = 1808 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 90/670 (13%), Positives = 183/670 (27%), Gaps = 159/670 (23%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLK 58 + +D ET G+ + E + L +++PV ++D + + + L+ Sbjct: 1256 IKYCGLDMETT--------GLEVFGE--KIRLIQISVENYPVIIYDMFNITNNNILDGLR 1305 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 + L + ++ + N F+ L + I T + ++ + Sbjct: 1306 KILNDENIVKIIQNGKFDTKFLLYN---NFNITNIFDTYIASKLLDKNKNM------YGF 1356 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 + E K L K + + + N++ Y D + +++K+L Sbjct: 1357 KLNNIVE-KYLSVYLDKQQQNSVWNNSLLNNNQ------LFYAARDSSCLLKLYKKLSEQ 1409 Query: 179 S---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E + + G VD+ + + E +L+ Sbjct: 1410 IKAENMQIVNDIENKCILPICDMELNGIKVDLENLNKSTDQILNELNVERDKLKKELKNE 1469 Query: 230 VSSSRCLEKLKTWLFLETGLHLE-DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + +++ L L L + T L + + N + + Sbjct: 1470 DINVNSQQQILKALQDNNVRDLSNKLIDNTSDANLKNFINHNAVI--LLRNYRKLYKLYS 1527 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 L +N T + +GR+S Q +PR Sbjct: 1528 AFYLKLPLHINKKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPR----------------- 1570 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 +R I +E ++AD IE ++ A + ++ LKA+ DL Sbjct: 1571 ------------QKNIREIFIPTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDL 1618 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + T + ++ K+ R + K + L Y + A+T Sbjct: 1619 HTLTASIITKKGINEINKEDRHVAKAINFGLLYGMNYVNLRTYANTY------------- 1665 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 C ++ + + +S Sbjct: 1666 -------------------------YNVKMNLDQCLYFYNSFFEHYKGLSRWH----NIV 1696 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 +QT + ++ ++ P Sbjct: 1697 KQTKALEYSTLSNRKVVFPYFSFT------------------------------------ 1720 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDT-DEFN 643 K VQ DIL ++ K I+L VHDEI+ E E Sbjct: 1721 -------KALNYPVQGTCADILKLALVELYKNLRHINGKIILCVHDEIIIEVDKKHQEEA 1773 Query: 644 ASMLYHLMTS 653 +L M + Sbjct: 1774 LRILVESMEN 1783 >gi|218132195|ref|ZP_03460999.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC 43243] gi|217992916|gb|EEC58916.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC 43243] Length = 879 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 95/672 (14%), Positives = 184/672 (27%), Gaps = 138/672 (20%) Query: 20 GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVT---IVAHNSYF 75 G+ ED CV A +D+ V + + LK + + I N Sbjct: 324 GLKLLYEDGCVSGAALAHEDNSVCYIPV--QGFVTEDYLKAKITDMAAVCDCIAGLNIKS 381 Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGE-ALKLSSQKMEEGKELIA 131 + + I + A + + L + E ++ Sbjct: 382 VLPAIDRQV-----YPKLIDAGLGAYLLNPLKESYSYDELARDYLNMLLPNRNELTGRMS 436 Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV--TVTREIFKRLEPLS--SKEQELWY 187 R YC ++ ++ + E L + Sbjct: 437 YAEASMVKSEELAR--------LACMEAYCVRHAWNVISVKLDEVQMKHLFDDIEMPLVF 488 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + G VD + T+L+ + L + ++L T LF + Sbjct: 489 VLYDMECEGIMVDSKGLKEYGDKLATRITELENTIYELAGTK-FNINSPKQLGTVLFEDM 547 Query: 248 GLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 L T++ T VL P ++ R ++ + L + DGR+ Sbjct: 548 KLPSGKKTKSGYSTAADVLEKLAPEYPVVAKILEYRQ-LTKLKSTYADGLAVYILEDGRI 606 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 G + TGR S QN+P + Sbjct: 607 HGHFNQ-TITATGRISSTEPNLQNIPVRMEIGR-------------------------QI 640 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R + G + AD + IE R+LA M+ + + A+ T +D++ T ++ F+V +V Sbjct: 641 RKVFVPKPGCVFLDADYSQIELRILAHMSQDDKLIAAYNTAQDIHAITASQVFHVPLDEV 700 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T+ QR+ K + + Y + L+++ + + F Sbjct: 701 TRTQRSNAKAVNFGIIYGIS-----SFGLSQDLSISRKEASEYIEQYFATYPHIKEFIDG 755 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + ++ +RR Sbjct: 756 LVASAKKNGYSTTMF-----------------------------------------GRRR 774 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT--ENIV 602 VP + + N + + + N Sbjct: 775 PVPELNSSNFMQRQFGE----------RIAMNSPIQGSAADIIKIAMINVSRALKDNN-- 822 Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGL 661 L M+ L VHDE++ ET + + + MT+ S + Sbjct: 823 -------LKSKMI----------LQVHDELLIETYEDEVDAVRQILIDNMTNAAS--LRV 863 Query: 662 PLKAEGYESKRY 673 PL+ + E + Sbjct: 864 PLEVDVKEGHDW 875 >gi|257469719|ref|ZP_05633811.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] gi|317063951|ref|ZP_07928436.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] gi|313689627|gb|EFS26462.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] Length = 908 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 94/662 (14%), Positives = 192/662 (29%), Gaps = 143/662 (21%) Query: 32 LFAFGFDDHPVELWDCVHDPVMPQ-----VLKEALENTDVTIVAHNSYFERTVLKACFNL 86 FA H P+ + +KE N+D + +N +L + Sbjct: 366 GFAVSSLKDD-FYLPLGHTPLFHKNLDFNKIKEFFRNSDSKFITYNFK---PLLN--EGV 419 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEAL------KLSSQKMEEGKELIARFCKGETHE 140 +I ++ A + V L ++ + GKE E + Sbjct: 420 EIKNMDV-DLMI-AYHLISSQTKEGVEIPLEQLSGIDIAPYSEKFGKEAPGNLSTEEYGK 477 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 L +R+K E D+ E E L + + +G +D Sbjct: 478 FLTERSKGIMETYGIAMEEIKGKDLLEVLE---------KTEMPLIKVLSAMERKGIKID 528 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + +++ + L +++ + + ++L LF + L T+ + Sbjct: 529 PVYFAKYEKELEILLSDLQKKIFEIAG-EEFNLNSPKQLAEVLFFKLNLDPVKKTKTGLS 587 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T + VL K + + ++ ++ L + ++S RL T +G + TG Sbjct: 588 TDEEVLEKLKSDGVEIASYILEYRKYAKLKNTYVDALPKLVDSKDRLHTTFNQIGTT-TG 646 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P + + +R IA G L+ Sbjct: 647 RLSSSNPNLQNIPVKTDEGMK-------------------------IRQGFIADSGNVLM 681 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 D + IE RVLA ++ ++ + A++ EDL+ T + F Sbjct: 682 GIDYSQIELRVLAELSKDENLIAAYKNNEDLHRVTAKKIF-------------------- 721 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + + NF + + E Sbjct: 722 -----------------------ELGEGEEVSREQRIIAKTINFSIIYGKTAFGLSKELG 758 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + +++ RV + + E+ N Sbjct: 759 IPQKEATDYINRYFEQYPRVKDFERSIIDYAEK--------------------------N 792 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 GR + + + Q R +++Q + +IL + M+ Sbjct: 793 GYTETYFGRRRIIEGIISKN---KNIKNQAERMA------VNSVIQGTAAEILKKVMIEI 843 Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESK 671 K ++L VHDE++ E + + +M ++ + + L K Sbjct: 844 FKVIDGKEDISLLLQVHDELIFEIKEEKVEEYRTIIENIMRNSVKF-NDVVLDINTNIGK 902 Query: 672 RY 673 + Sbjct: 903 NW 904 >gi|88856208|ref|ZP_01130868.1| DNA polymerase I [marine actinobacterium PHSC20C1] gi|88814527|gb|EAR24389.1| DNA polymerase I [marine actinobacterium PHSC20C1] Length = 879 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 102/685 (14%), Positives = 203/685 (29%), Gaps = 146/685 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64 +ID T S G+ D V D + L E L + Sbjct: 320 WID--TNSAHGSAPLGLTVAIVDGTVTGLGLATATETAF-VPWAADRLDYVALTEWLASD 376 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-GEALKLSSQKM 123 H+S + + + LDI T++ + + + + + Sbjct: 377 A-PKFMHSSKAQLKI-ASANGLDIAGIA-FDTMLAGWVLKPGGKPEELEAQVYNYLGETI 433 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAW--RLFGEYCKGDVTVTREIFKRLEPLSSK 181 ++G +W EY G + + Sbjct: 434 DQG---------DPNQLVPETEALSPATLSWYVVRVAEYLAGRLD-EGSLGVLT----DI 479 Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E L + + G V+ L L+ + ++ + + + + ++L+ Sbjct: 480 EMPLVPVFARMERTGIAVNQQLLLDLSASLTETAQEVARNAFEVIGREI-NLGSPKQLQE 538 Query: 242 WLFLETGLHLE---DLTETTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + + +T L+ ++ P + +R + + + + Sbjct: 539 VLFTQLEMPKTRANKTGYSTDAASLADLQEQAPHPFLNLLLQHRDATKLVQI--ITGIEK 596 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 A++ GR+ T + G+ TGR + QN+P + + Sbjct: 597 AIDDSGRVHTTYEQAGS-STGRIASNDPNLQNVPIKTATGR------------------- 636 Query: 357 LQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +RS A G L+ AD + IE R++A ++G++ ++AF GEDL+ +R Sbjct: 637 ------QIRSAFEAGAGFDTLLTADYSQIEMRIMAHLSGDEGLIQAFNEGEDLHRFVGSR 690 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F V PA+VT + R K M L Y GL+ + ++ ++ Sbjct: 691 IFGVEPAEVTAEMRTKVKAMSYGLAY--------------GLSAFGLSKQLRIETS---- 732 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + + + + V + + EQ +G Sbjct: 733 --------------------------EAKALMTDYFARFGAVRDYLRNV---VEQARTDG 763 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 GR + D+ + R+ Sbjct: 764 YTTTI-----------------------FGRRRPFGDLNSKN---RVLRDNAERQA---- 793 Query: 596 KLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLY- 648 + +Q + DIL M+ ++L VHDE+V E + + + Sbjct: 794 --LNSPIQGSAADILKLAMLRIDSDMRVEGLKSRMLLQVHDELVFEIAGGELERMTTIVH 851 Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673 M+ S +PL + + Sbjct: 852 ERMSGAAS--LSVPLDVQIGTGHNW 874 >gi|325188009|emb|CCA22551.1| hypothetical protein SELMODRAFT_88603 [Albugo laibachii Nc14] Length = 855 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 112/799 (14%), Positives = 212/799 (26%), Gaps = 214/799 (26%) Query: 5 FIDFETRSPIDLTKCGI---CKYAEDVCVILFA----FGFDDHPVELWD-CVHDPVMPQV 56 D E + ID+ G K + I + + P D + + Sbjct: 137 ACDTE-VADIDVKSVGPVGNGKVSLQFEDIALYDGPDVNYGNGPYIWVDNLDNAEGTLEY 195 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNG------LPSAL 109 + LE++ + V HN F+R VL I + T+ +AR +L Sbjct: 196 FRAFLEDSSLKKVWHNYSFDRHVLFNH---GINVQGLHGDTMHMARLWNTARFKRGGYSL 252 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR------LFGEYCKG 163 +A+ L +K KEL + ++ PN + R + Y Sbjct: 253 QALTSDLLHQRKKNM--KELFGTPKPRKDGSPGKEKTIPNVADLQRCADFRSRWIRYSVF 310 Query: 164 DVTVTREIFKRLEPLSSKEQ--------------------------ELWYLDQTINDRGY 197 D T + + L+ I +G Sbjct: 311 DAESTWFLHRVLQHKLELTHWIEDADVLTGQQVDRSMYEFYLKYLVPFGECLTDIERKGM 370 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR-----CLEKLKTWLFLET----- 247 VD A + + +R +L+Q + + + + + LF Sbjct: 371 NVDRAYLRRVEKTALNDRKRLEQHVLTWAKRYCEEADRMNVYSAAQKQQLLFAPYSDAQG 430 Query: 248 ---------------------GLHLEDLT--------------------ETTCQRVLSSN 266 G + VL Sbjct: 431 KAILPAERSFEVENTEQHIEPGKQRPKKKRNITIRGFGLTPISFTASGLPSVTASVLEEL 490 Query: 267 KKLTP-----------------------QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 A++ + + L E +S GR Sbjct: 491 AGNPEANPPKYGKAYDHFADKEEGAAACHALRALYEISSINTMLNNFILPLQELADSAGR 550 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + +L + TGR S QN P L+ Sbjct: 551 VHCSLNLN--TDTGRLSSRKPNLQNQP-------------------------ALEKDRYK 583 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A +GKKL+VAD + +E R+LA + + ++AF G D + T ++ Sbjct: 584 IRDAFVAPKGKKLIVADYSQLELRLLAHITQCKAMIEAFRAGGDFHSRTAVAMYD----- 638 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 + K +E + + T G + L + + + NF Sbjct: 639 ------NVAKAVE-------SGEVLLEWDYTKGTS-PPVPLLKEKFATERKNAKILNFSI 684 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 + + + ++ W V + + + Sbjct: 685 AYGKTPFGLSKDFGVRRVEASKILDKWYGGRQEVRKWQEQAIDTARK------------- 731 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTRQLTREYTYGGKLTENI 601 GR D + +N R Sbjct: 732 -------------FGYTRTLMGRYRRLPDAMLKSNSFISRKAQSHAERAA------VNTP 772 Query: 602 VQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN 654 +Q + D++ + M+ K G+++V +HDEI+ E P+ + A + LM + Sbjct: 773 IQGAAADLVMQAMLRINKNSRLRSMGWEMVCQIHDEIILEGPEDNAEEAKAIVKDLMENP 832 Query: 655 PSWAKGLPLKAEGYESKRY 673 + L+ + + + Sbjct: 833 FEHPLSVDLQVDAKIDRSW 851 >gi|312139906|ref|YP_004007242.1| DNA polymerase i pola1 [Rhodococcus equi 103S] gi|311889245|emb|CBH48559.1| DNA polymerase I PolA1 [Rhodococcus equi 103S] Length = 912 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 103/667 (15%), Positives = 187/667 (28%), Gaps = 140/667 (20%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT-DVTIVAHNSYFERTVLKACFNL 86 V A D + H + L Sbjct: 360 GDVTAVAIAAPDGEGAYISTTTATPEDEAALADWLADAGRPKALHEAKRAMHAL-RGRGW 418 Query: 87 DIPIHRWICTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGK---ELIARFCKGETH 139 + T + A L + LK + E G+ L+ + Sbjct: 419 MLAGLT-SDTALAAYLVRPGQRSFNLDDLSLRYLKRELRVEESGQQQLSLLDDEDAADAE 477 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 + + + D+ T + E L + + G V Sbjct: 478 AAEGEILRSRAVRDLAAALDTELADIEATGLLA-------DMELPLLEVLANLESTGIAV 530 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT- 258 D H L + + ++ + + ++L+ LF E + T+T Sbjct: 531 DTTHLHDLQSAFAARVAEAAEAAYAVIGKQI-NLGSPKQLQVVLFDELDMPKTKKTKTGY 589 Query: 259 --CQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 L S K P + +R A+R V ++ L++ + DGR+ T A+ Sbjct: 590 TTDADALQSLFEKTQHPFLEHLLEHR-DATRLKVT-VDGLLKTVAEDGRIHTTFNQTVAA 647 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374 TGR S QN+P + + +R + EG Sbjct: 648 -TGRLSSTEPNLQNIPVRTDAGR-------------------------QIRDGFVVGEGY 681 Query: 375 -KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 L+ AD + IE R++A ++G+ ++AF TGEDL+ +R+F V +VT + R K Sbjct: 682 ETLLTADYSQIEMRIMAHLSGDAGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVK 741 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 M L GL+ A +K Sbjct: 742 AMSYGL--------------AYGLSAFGLAAQLKI------------------------- 762 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + A+ + V + +E+ + + Sbjct: 763 -----STEEARQQMDAYFARFGGVRDYLHEVVEQARK----------------------- 794 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 GR D+ ++ R +Q + DI+ Sbjct: 795 ---VGYTETLFGRRRYLPDLNSDN---RQRREVAERAALNAP------IQGTAADIIKVA 842 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 M++ +A ++L VHDE+V E + L M + +PL+ Sbjct: 843 MIDVQRALREAGLASRMLLQVHDELVLEVAAGERERVEQLVREKMAAAID--LSVPLEVS 900 Query: 667 GYESKRY 673 + + Sbjct: 901 VGTGRSW 907 >gi|83273487|ref|XP_729420.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii] Length = 1813 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 86/660 (13%), Positives = 178/660 (26%), Gaps = 151/660 (22%) Query: 11 RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLKEALENTDVTI 68 +D+ G+ + E + L +++PV ++D + + + L++ L + ++ Sbjct: 1263 YCGLDMETTGLEVFGE--KIRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIVK 1320 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 + N F+ L + I T + ++ + + E Sbjct: 1321 IIQNGKFDTKFLLYN---NFNITNIFDTYIASKLLDKNKNM------YGFKLNNIVE--- 1368 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--------- 179 + + +LF Y D + +++K+L Sbjct: 1369 --KYLSVYLDKQQQNSVWNNSLLNNNQLF--YAARDSSCLLKLYKKLSEQITAENMQIVN 1424 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E + + G VD+ + + E +L+ + +++ Sbjct: 1425 DIENKCILPICDMELNGIKVDLESLNKSTDQILNELNVERDKLKKELKNDDINVNSQQQI 1484 Query: 240 KTWLFLETGLHLE-DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L L L + T L + + N + + L + Sbjct: 1485 LKALQDNNVRDLSNKLIDNTSDANLKNFINHNAVI--LLRNYRKLYKLYSAFYLKLPLHI 1542 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 N T + +GR+S Q +PR Sbjct: 1543 NKKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPR--------------------------- 1575 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R I +E ++AD IE ++ A + ++ LKA+ DL+ T + Sbjct: 1576 --QKNIREIFIPTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITK 1633 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 ++ K+ R + K + L Y + A+T Sbjct: 1634 KGINEINKEDRHVAKAINFGLLYGMNYVNLRTYANTY----------------------- 1670 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 C ++ + + +S + +QT + Sbjct: 1671 ---------------YNVKMNLDQCLYFYNSFFEHYKGLSRWH----NSVKQTKALEYST 1711 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 ++ ++ P K Sbjct: 1712 LSNRKVVFPYFSFT-------------------------------------------KAL 1728 Query: 599 ENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTS 653 VQ DIL ++ K I+L VHDEI+ E E +L M + Sbjct: 1729 NYPVQGTCADILKLALVELYKNLRHINGKIILCVHDEIIIEVDKKHQEEALKILVESMEN 1788 >gi|66828405|ref|XP_647557.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4] gi|27414159|gb|AAO12053.1| mitochondrial DNA polymerase A [Dictyostelium discoideum] gi|60475250|gb|EAL73185.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4] Length = 1369 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 114/800 (14%), Positives = 205/800 (25%), Gaps = 222/800 (27%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFA------FGFDDHPVELW----DCVHDPVMP 54 D E IDL K +I F+ F D +W D + + Sbjct: 657 ACDTE-VIDIDLKKFSP---IGHGKMICFSIYCGPQVKFHDGNSRVWVDVMDDIEGDEIL 712 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP------SA 108 QV KE E+ + V HN F+R + +++ TL +AR + Sbjct: 713 QVFKEYFEDESILKVWHNYAFDRHIFYNH-GINVKGFG-GDTLHMARLWNASRMNSGGYS 770 Query: 109 LKAVGEALKLSSQ---KMEEGKELIARFCKGETHECLYDRNKPNHREA-WRLFGEYCKGD 164 L+A+ + L + K G I + + + + EY D Sbjct: 771 LEALSKELLNKPKVPIKDLFGTRKIKADGEEGKSIVIPPLERIQRDSKFILNWIEYSSLD 830 Query: 165 VTVTREI----FKRLEPLSS------------KEQELWYLDQTINDRGYCVDVALAHTLN 208 +T + +L + + +L + RG VD+ +L Sbjct: 831 SELTWLLRENIHIKLRDMEWNQGTTMWDFYYLMWRPFGHLLTEMEQRGLKVDIDYLKSLE 890 Query: 209 QIVDVERTKLDQELESLTY------------------GLVSSSRCLEKLKTWLFLE---- 246 + + + + + L + +K K L LE Sbjct: 891 EKAYTDMEENRKVFLNWAKTHSPDAENMNPVSDAQIQQLFFAPVQNKKTKESLPLEKDFE 950 Query: 247 -------------------------TGLHLEDLT----ETTCQRVLSSNKKLTPQAIQV- 276 G+ + LT + L P + Sbjct: 951 CDNLDGTIEVGKTKPKKKKTFYLRGIGMESKSLTTNGWPSVDSSSLRELAGKNPIDGKYG 1010 Query: 277 ------------------FNNRMRASR-----------------SAVLKLNTLVEAMNSD 301 R + R + L + +S+ Sbjct: 1011 SAYDFFVKSKNECYKDLPIEEREQMGREASIAINALLELGSIGTLLNTFIIPLQKLADSN 1070 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 RL ++ + TGR S QN P L+ Sbjct: 1071 SRLHTSINVN--TETGRLSSKKPNLQNQP-------------------------ALEKDR 1103 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R G L+VAD +E R+LA + + + AF+ G D + T Sbjct: 1104 YKIRKAFTCEPGNTLIVADYGQLELRLLAHITNCKSMITAFQVGGDFHSRTAMGM----- 1158 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 + E+ L + G L ++ NF Sbjct: 1159 ---YPHVKEAIDRGEVLLEWD-------------GEGEPPKPLLKNVYASERRKAKTLNF 1202 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + + + + W + V + + + Sbjct: 1203 SIAYGKTAHGLSQDWGVTLNEAKETLNRWYEDRPEVLVWQRKTIETAHK----------- 1251 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 GR D+ N+ R Sbjct: 1252 ---------------YGWTRTLMGRYRQLPDIKGNKGMKG----HAERASINTPL----- 1287 Query: 602 VQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNP 655 Q + DI+ + M+ + G+ +++ +HDE++ E P+ A +M + Sbjct: 1288 -QGGAADIVMKAMLIIEDNKRLKELGFKLIMQIHDELILEGPEQHADEA---RSIMMNLM 1343 Query: 656 SWAKGLPLKAEGYESKRYRK 675 S PL + RY K Sbjct: 1344 SNPLTTPLLIDLVVDCRYAK 1363 >gi|297194997|ref|ZP_06912395.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486] gi|197721920|gb|EDY65828.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486] Length = 909 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 98/646 (15%), Positives = 179/646 (27%), Gaps = 135/646 (20%) Query: 44 LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +D + + + V HN+ V +I T + A Sbjct: 378 WFDTTQLDESDERAFAAWISDPSRPKVMHNAKDALRVFPEH-GWEIAGVTM-DTALAAYL 435 Query: 103 NGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 AL A+ +EL G+ ++ + + + Sbjct: 436 VKPGRRSFALDALSIEYLH--------RELAPAAADGQLAFGTDEQAEADALMSQARAVL 487 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + E +E L E L + G D A + Q + Sbjct: 488 DLGEALGGKLEEVGAVELLHDVELPTSLLLARMERHGIAADRAHLEAMEQQFAGAVQQAV 547 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK----KLTPQAIQ 275 +E + + ++L+ F E L T+T + + + Sbjct: 548 KEAHAAVGH-EFNLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAAQTEHELPV 606 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +R + L++ + +DGR+ T A+ TGR S QN+P + Sbjct: 607 IMLRHREQARLRST-VEGLIKTIAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVPVRTDE 664 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAG 394 +R + EG + L+ AD + IE RV+A ++ Sbjct: 665 GRA-------------------------IRRGFVVGEGYESLMTADYSQIELRVMAHLSE 699 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + ++AF +GEDL+ T ++ F+V + V + R K M L Sbjct: 700 DLGLIEAFTSGEDLHTTVASQVFSVERSAVDAEMRRKIKAMSYGL--------------A 745 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 GL+ + + A + + ++ Sbjct: 746 YGLSAFGLSQQLGIEPA------------------------------EARVLMDTYFERF 775 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + + T GR D+ Sbjct: 776 GGVRDYLRRVVDEARAT--------------------------GYTATMLGRRRYLPDLN 809 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 ++ R +Q + DI+ M+N +A ++L V Sbjct: 810 SDN---RQRRESAERMALNAP------IQGTAADIVKVAMLNVDRALTDAKLSSRLLLQV 860 Query: 629 HDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 HDEIV E + L M+S S PL + Sbjct: 861 HDEIVLEVAPGEREQVETLVRHEMSSAVS--LRAPLDVSVGAGPDW 904 >gi|124516396|gb|EAY57904.1| DNA polymerase I [Leptospirillum rubarum] Length = 872 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 87/655 (13%), Positives = 189/655 (28%), Gaps = 170/655 (25%) Query: 38 DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA----CFNLDIPIHRW 93 D + + + + + + + F++T L F L IP Sbjct: 363 DGDQANFYPFSSEEEVLKRMSAW-RDEGKAVWC----FDQTRLYRKCPRFFALGIPF--V 415 Query: 94 ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 + A L+ + L+ + + + Sbjct: 416 FDATIAAYLLEPGHRDYLLENLAARYFLTDTSD-----------RPRLVRNVLSKLW--- 461 Query: 151 REAWRLFGEYCKGDVTVT--REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 D E+ + +E + + G +D + Sbjct: 462 ------------EDAVKEGLLELVQSIEIPLG------RILYQMEVLGIRIDRQALESAR 503 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 + ++ +L++E+ L + +++ L+ + GL + +T + L+ Sbjct: 504 ESIEALARELEEEIYRLAGSR-FTILSPKQVGEILYGKLGLPTARKGKTGYSTDEETLTG 562 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 L P ++ R + ++ + +++ GRL G + TGR S Sbjct: 563 LSGLHPLPEKILAYRQ-MKKLLSTYVDPISRGVDAQGRLHGQFNQ-TVTATGRLSSSNPN 620 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S + E +R C IA E + L+ AD + IE Sbjct: 621 LQNIPMRSPAGRE-------------------------IRKCFIAGENRVLLSADYSQIE 655 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA + + + FE ED++ T F T + R K + Sbjct: 656 LRLLAHFSEDPELMAVFERNEDIHARTARLLFGDPV---TPETRRKAKTIN--------- 703 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ +++ + Sbjct: 704 -----FGILYGMS------------------------------AFSLSLDLGVEPPEAQA 728 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + +V L++ + + ++T E + G Sbjct: 729 FIDRYFGAFPKVGPLFDSILEEAKKTGE--------------------------VRTILG 762 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---ATKAG- 621 R ++ + R ++Q + D++ + M++ K Sbjct: 763 RKRRIPELSAPD---RRSREYGERMA------VNTVLQGSAADLIKKSMVDFGQVRKDRP 813 Query: 622 --YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 D+++ VHDE++ E + + +AS + LM +PL + K + Sbjct: 814 EVGDLLVQVHDELLFEVREDNLEDASGTIRSLMEGA--LRLKVPLIVQVGHGKNW 866 >gi|291286346|ref|YP_003503162.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809] gi|290883506|gb|ADD67206.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809] Length = 798 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 94/621 (15%), Positives = 185/621 (29%), Gaps = 161/621 (25%) Query: 70 AHNSY-----FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 HN ++ + +++ N S ++ K E Sbjct: 316 GHNLKSAQFFYDIKGIYRLIGERYEEA--YDVFLMSWLNDPDSG--------GITKSKAE 365 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 I +F +++K ++ E Sbjct: 366 N----IEQFIGNIVVHAQEEKDKLKANGLLEVY---------------------LGMELP 400 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 + Y + + G D + + + E ++ +++++ + + ++L+ +LF Sbjct: 401 VAYCLGKMENNGIGFDKDVMAKVADKLQDEVAEISEKIKTFVGYDI-NLNSPKQLQVFLF 459 Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN---RMRASRSAVLKLNTLVEAM 298 E G+ T+ +T + L + + P V + ++ L + + Sbjct: 460 EELGVEGLKKTKTGFSTDEESLRAMIPMNPLYAHVLEDILVYRELAKLLSTYALPLKDYV 519 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +DGR+ + + G + TGR S QN+P + +L Sbjct: 520 LADGRIHSSFRQTG-TATGRLSSVNPNMQNIPMKGKWGVKL------------------- 559 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 R I EG V D + IE R+LA + G++ +A+ ED++ T + F Sbjct: 560 ------REAFIPREGYSFVSFDYSQIELRILAHLTGDEHLKEAYRNNEDIHTKTASGIFG 613 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 VAP +V R + K + GL+ + Sbjct: 614 VAPEKVDSGMRRLAKAVNF--------------GILYGLSPFGLS--------------- 644 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 + ++ + + + +V + + ++T E G A Sbjct: 645 ---------------RDTGVSQKEAKKFIEKYFATYPKVKGF---IEKIAKETKEKGYAE 686 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 GR R++ + T + R T Sbjct: 687 TLA-----------------------GRKRFIREIRSKN---RTVAMRGERIATNVP--- 717 Query: 599 ENIVQAVSRDILAEGMMN----ATKAGYD--IVLTVHDEIVCETPDTDEFNA-SMLYHLM 651 +Q + DI+ M+ YD +VL VHDE+V E D D + +M Sbjct: 718 ---MQGSAADIIKLAMVECQAVLDDKEYDALVVLQVHDELVFEVLDKDIDEFSDRVRSIM 774 Query: 652 TSNPSWAKGLPLKAEGYESKR 672 +PL G K Sbjct: 775 EGVME--LDVPLVVNGAAGKN 793 >gi|162447216|ref|YP_001620348.1| DNA polymerase I [Acholeplasma laidlawii PG-8A] gi|161985323|gb|ABX80972.1| DNA polymerase I [Acholeplasma laidlawii PG-8A] Length = 880 Score = 254 bits (649), Expect = 4e-65, Method: Composition-based stats. Identities = 73/505 (14%), Positives = 145/505 (28%), Gaps = 121/505 (23%) Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E L + + +G VD+ + + + KL E+ L + ++ Sbjct: 483 NDVELPLSDVLADMEYQGLTVDLKELENQTKDMSLRIDKLRTEILLLAGVD-FNVDSPKQ 541 Query: 239 LKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 L LF GL T+ +T VL++ P + R ++ L + Sbjct: 542 LGDVLFDTLGLPNGKKTKTGYSTGIEVLNNLIDHHPIINLIIEYRQ-LTKLYSTYLIGIK 600 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 E++ D R+ + TGR S QN+P + Sbjct: 601 ESVFEDNRVHTIYNQA-LTLTGRLSSLEPNLQNIPIRTEEGR------------------ 641 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R I V AD + IE RVLA MA + +AFE +D++ T + Sbjct: 642 -------QIRKLFIPEPDSYFVGADYSQIELRVLAAMADVKNLKQAFEEDQDIHTVTAQK 694 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F+V +QR K + G+ + + + Sbjct: 695 VFHVDTVD--SEQRRRAKAVNF--------------GIIYGIGPWSLSEDI--------- 729 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 E + + + + + + + + Sbjct: 730 ---------------------GVTVKEAENFISRYLEVYPEIKDYMTNIVEFAKT----- 763 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 + + R ++ + L ++ Sbjct: 764 ---------------------HGYVETLLNRRRYIPELSSKVFNLREFGKR--------- 793 Query: 596 KLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLY- 648 +Q + DI+ M++ K ++L VHDE++ E + + Sbjct: 794 TSLNAPIQGTAADIIKLAMIDLHNYLKDNKKKSKLILQVHDELIVEVVKEELDEMKEVIP 853 Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673 ++M + G+ LK + Sbjct: 854 NIMEKA--FNLGVRLKTSCDVGNNW 876 >gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5] gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5] Length = 899 Score = 254 bits (648), Expect = 5e-65, Method: Composition-based stats. Identities = 100/674 (14%), Positives = 179/674 (26%), Gaps = 149/674 (22%) Query: 30 VILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFER-- 77 V+ A H L+ L + ++ AH +R Sbjct: 341 VVGLALA-GGGRAFYLPLRHQYLGAPAQLSAEEAAGALRPLL-SGELPKHAH----DRKG 394 Query: 78 --TVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG-EALKLSSQKMEEGKELIA 131 L L + T + +R AL V E + + G + Sbjct: 395 VQHALAQ-LGLAL-GGPGADTDLASRLLLPTRREHALADVARERIGCELPRDPSGGDAAR 452 Query: 132 R------FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185 + + E +++ E+ L Sbjct: 453 KSERVPVEGLEVERVGEWAAQCAASLLDLAPALERALE-SEGLLPLYR------DVERPL 505 Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 + + G VD A ++ L+ + + + +L LF Sbjct: 506 VPVLCEMERAGILVDRAAMEGMSAEFGRTMQDLEARIHAAAGHP-FNIASTRELAQVLFT 564 Query: 246 ETGLHLED---LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-D 301 E L + +T Q VL + V +R ++ ++ L + ++ D Sbjct: 565 ELALPVLKRLKTGPSTDQDVLEKLAEQHELPRLVLEHR-ALAKLKGTYVDALPQLVDPRD 623 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 GR+ T GA+ TGR S QN+P + +S Sbjct: 624 GRIHTTFHQAGAA-TGRLSSSDPNLQNIPVRTE-------------------------LS 657 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R+ +A G +L+ AD + IE R+LA + + L+AF ED++ T A +F VA Sbjct: 658 RRIRAAFVAPPGWRLLSADYSQIELRILAHYSDDPALLEAFRLREDVHTRTAAETFGVAT 717 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 +VT D R I KV+ + Y + L+L + + + Sbjct: 718 GEVTSDMRRIAKVLNFGIAYG-----LSAFGLSQRLDLPGAEAQGIIDRYFARYAGVRRY 772 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF-EQTIENGKAIIA 540 E+ G A + ++ L A I A Sbjct: 773 VEKAVEDARATGESRTLFGRA---------RAMPEIAARNPALRNAAERTAINTPIQGTA 823 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 V ++ + + R Sbjct: 824 ADIVKVAMIRVH----------------------------DALAGDARRARL-------- 847 Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659 ++ +VL V P+ + L M Sbjct: 848 -------------LLQVHDE---LVLEV--------PEDELAPVEALVRREMGGAAQ--L 881 Query: 660 GLPLKAEGYESKRY 673 +PL E + Sbjct: 882 KVPLDVEVGVGHSW 895 >gi|229823043|ref|ZP_04449112.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271] gi|229787482|gb|EEP23596.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271] Length = 880 Score = 254 bits (648), Expect = 5e-65, Method: Composition-based stats. Identities = 103/677 (15%), Positives = 198/677 (29%), Gaps = 135/677 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVT 67 ET S +L A + ++ LE+ D+ Sbjct: 324 LETLSEN-----------YHFEPVL-AVAWTQGDQAYATSGKVAFASSAFRKWLEDGDLP 371 Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEE 125 ++ + + ++L L + + A + L ++ L L Q + Sbjct: 372 KISADLKRD-SILLDHQGLTLA-GVTFDVGLAAYLVDVEKIKDLTSLATYLDLGIQVQLD 429 Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185 + KG + H + +T+++ ++ E Sbjct: 430 ----EVVYGKGVKQALPENERLAQHLADKVSLLDQAV--APLTQQLDDLGMTQLYQDMEF 483 Query: 186 WY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 + + RG VDVA +N ++ +L+ E+++L + ++L L Sbjct: 484 PLAQVLTDMEKRGVAVDVATLDQMNDLLLARLEELEAEIQTLAGQA-FNPNSPKQLGEIL 542 Query: 244 FLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 F GL + T+ +T VL K P + R ++ L L + + + Sbjct: 543 FERLGLPVIKKTKTGYSTAADVLEKLKDAHPIVAALLTYRQ-LAKLQGTYLAGLPKFIQA 601 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 DG++ ++TGR S QN+P + Sbjct: 602 DGKIHTRFVQ-TLTQTGRLSSADPNLQNIPIRMEEGRK---------------------- 638 Query: 361 SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R + G +L AD + IE RVLA ++G+ +AF G+D++ T R F + Sbjct: 639 ---IRQAFVPSEPGWQLFGADYSQIELRVLAHISGDPHMKQAFLEGQDIHAATARRVFGL 695 Query: 420 APAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 A + V D R K + + Y + L++ + E+ Sbjct: 696 AEDEAVNSDMRRQAKAVNFGIVYGIS-----DYGLSQNLDMPRKEAKAFIDRYLAEYPGI 750 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 F + + + Sbjct: 751 STFMQEIVAQAKKDGYVSTL---------------------------------------- 770 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 +RR +P +Y R+ +NT + Sbjct: 771 -WGRRRALPDIYSSNFNLRSF---------------AERTAMNTPIQ--GTAADIIKVAM 812 Query: 599 ENIVQAV-SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPS 656 + QA+ RD+ A ++ E++ E P + L +M S Sbjct: 813 VALDQAIRQRDLQARLLLQVHD-----------ELILEAPQEEIAILEELVPEVMEGAVS 861 Query: 657 WAKGLPLKAEGYESKRY 673 +PLK E + Sbjct: 862 --LSVPLKVEAASGSNW 876 >gi|14916560|sp|Q9RLB6|DPO1_RICHE RecName: Full=DNA polymerase I; Short=POL I gi|5912332|emb|CAB56073.1| DNA polymerase I [Rickettsia helvetica] Length = 921 Score = 254 bits (648), Expect = 5e-65, Method: Composition-based stats. Identities = 89/656 (13%), Positives = 185/656 (28%), Gaps = 148/656 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-- 112 ++ L + + + ++ +LK N I ++ + + K + Sbjct: 375 DIIFNLLADKSIKKITYSLK---PLLKFYANQSHEITAIEDLELMQYALSAGLSQKNLFE 431 Query: 113 ----------GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE--AWRLFGEY 160 + K + + A E P E + Sbjct: 432 EALKEDNRPLSKLAYREEFKGDTERSTAAYKSVREDASTGSTSKLPLEVEFGKRPIVINE 491 Query: 161 CKGDVT----------VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 V + + K S + + ++ + G VD L+ Sbjct: 492 SARIVANFISLYKQNILELKDNKAFRLYSDIDLPICFILDKMEKVGIKVDANYLKQLSTE 551 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTETTCQRVLSS 265 E KL++E+ +L+ + L++L LF + L + +T +L Sbjct: 552 FGAEILKLEEEIFALSGTK-FNIGSLKQLGEILFEKMQLPFGKASAKASSYSTGAEILEK 610 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + + + ++ ++L + +++ T ++ TGR S Sbjct: 611 LSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPN 670 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S + +R IA EG KL+ AD + IE Sbjct: 671 LQNVPIRSSEGNK-------------------------IRQAFIAEEGYKLISADYSQIE 705 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+L+ +A +AF +D++ T + FN+ ++T + R K + Sbjct: 706 LRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHELTNEHRRKAKAIN--------- 756 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ A + Sbjct: 757 -----FGIIYGIS------------------------------AFGLAKQLNVTNGEASE 781 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 K + ++ V E + +N + G Sbjct: 782 YIKKYFAEYKGVQEYMEQTKAFA--------------------------SSNGYVTNFFG 815 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------K 619 R + + + + R +Q + DI+ M+N K Sbjct: 816 RKCFVPLIHDKK-----LKQFAERAAINAP------IQGTNADIIKIAMINLDQEIEKRK 864 Query: 620 AGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 +VL +HDE++ E P + ++ +M S +P+ E + Sbjct: 865 LKTRLVLQIHDELLFEAPIDEVEIIIPIIKKIME--YSTNMDVPIITEIRTGNNWM 918 >gi|328881679|emb|CCA54918.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712] Length = 916 Score = 253 bits (647), Expect = 6e-65, Method: Composition-based stats. Identities = 98/644 (15%), Positives = 173/644 (26%), Gaps = 135/644 (20%) Query: 46 DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 D + + + D V HN+ V I T + A Sbjct: 387 PSALDEADERAWAAWIADPDRPKVLHNAKGAMRVFPEH-GWSIAGVTM-DTALAAYLVKP 444 Query: 106 PS---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 AL A+ E L +A + F E Sbjct: 445 GRRSFALDALSVEYLHRELAPAAAADGQLAFGADDTAEAEALMTQARAVLDLGDAFAE-- 502 Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 K D RE+ E L + G D + Q + +E Sbjct: 503 KLDEVGARELLH------QVELPTSALLARLERHGIAADRDHLEAMEQQFAGAVQQAVKE 556 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK----KLTPQAIQVF 277 + + ++L+ F E L T+T + + + + Sbjct: 557 AHASVGH-EFNLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAAQTEHELPVIM 615 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R + L++ + +DGR+ T A+ TGR S QN+P + Sbjct: 616 LRHREQARLRST-VEGLIKTIGADGRIHTTFSQTVAA-TGRLSSTDPNLQNVPVRTDEGR 673 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQ 396 +R + EG + L+ AD + IE RV+A ++ + Sbjct: 674 A-------------------------IRHGFVVGEGFEALMTADYSQIELRVMAHLSEDA 708 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF +GEDL+ T ++ F V + V + R K M L G Sbjct: 709 GLIEAFTSGEDLHTTVASQVFGVERSAVDAEMRRKIKAMSYGL--------------AYG 754 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L+ + + + + + ++ Sbjct: 755 LSAFGLSQQLNID------------------------------PGEARGLMDTYFERFGG 784 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + + T GR D+ ++ Sbjct: 785 VRDYLRRVVDEARAT--------------------------GYTETMLGRRRYLPDLNSD 818 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 R +Q + DI+ M+N +A ++L VHD Sbjct: 819 N---RQRREAAERMALNAP------IQGTAADIVKVAMLNVDRALTEAGLASRMLLQVHD 869 Query: 631 EIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 EIV E + L M++ PL + + Sbjct: 870 EIVLELAPGERDRVETLVRAQMSAAAD--LRAPLDVSVGVGQNW 911 >gi|269120628|ref|YP_003308805.1| DNA polymerase I [Sebaldella termitidis ATCC 33386] gi|268614506|gb|ACZ08874.1| DNA polymerase I [Sebaldella termitidis ATCC 33386] Length = 885 Score = 253 bits (647), Expect = 6e-65, Method: Composition-based stats. Identities = 82/657 (12%), Positives = 181/657 (27%), Gaps = 138/657 (21%) Query: 31 ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 + F + LK+ ++ +V A+N F + Sbjct: 351 LGFGIS-NKEKNYYIPAAIISDKADFLKK-FKDKNVN--AYNIK-------ELFKSGLEY 399 Query: 91 HRWICTLVLARSNGLPSALKA----VGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + +++ G +A E L + E K+ E + Sbjct: 400 KDYFDIMLVWYVLGTEAAQDLESIIFSEFQVLLEKYEVEFKKQNMDEVSPERKAEFLTKR 459 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 + G + + +++ +E + + +G +D Sbjct: 460 SYYMTRLKEILGH--RLEAEGLNNVYENIEKKL------VPVLADMEKKGILIDPDYFGK 511 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263 + ++++ + L + ++L LF + L T+ +T VL Sbjct: 512 YGNELKNNLAEIEKNIYGLAG-EEFNINSPKQLSEILFEKMMLDPVKKTKTGYSTDVEVL 570 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + + ++ + L + +S+ R+ T G + TGR S Sbjct: 571 EVLAAQGVEVAEKILEYRGYTKLLTTYVEPLPKLADSENRIHTTFHQNG-TATGRLSSSN 629 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+P + + +R ++ EG + D + Sbjct: 630 PNIQNIPVKTDEGIK-------------------------IRRGFVSEEGWSFISFDYSQ 664 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA ++ ++ + A++ +DL+ T + F + Sbjct: 665 IELRVLAELSEDETLILAYQKDKDLHDLTARKLFFKTDEEP------------------- 705 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + NF + + E Sbjct: 706 ------------------------VSREERSIAKVINFSILYGKTPFGLSKELKIPMGDA 741 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + +++ RV N + Q + N + Sbjct: 742 KLYINKYFEEYPRVRTFLNSVLQEAK--------------------------LNGFVETL 775 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----T 618 G + ++ Q R +VQ + +I+ M+ Sbjct: 776 YGTRRYITGINSSN---KNIEAQADRMA------VNTVVQGTAANIIKIVMVKLYEEFKD 826 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 K +++L VHDE++ E + + ++M + K + L A G K + Sbjct: 827 KEDINMLLQVHDELIFEVKNESVDKYLKEIDNIMENTIKL-KNVRLAANGNVGKNWG 882 >gi|239946695|ref|ZP_04698448.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239920971|gb|EER20995.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 875 Score = 253 bits (647), Expect = 6e-65, Method: Composition-based stats. Identities = 86/632 (13%), Positives = 185/632 (29%), Gaps = 146/632 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++ L + + + ++ +LK N I ++ + + K + E Sbjct: 375 DIIFNLLVDKSIKKITYSLK---PLLKFYANQSHEITAIEDLELMQYALSAGLSQKNLFE 431 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + K + +I K + + + + F Y D Sbjct: 432 ----EALKETLIENIIIESAKIVINFISLYKQTILELKDNKAFRLYSDID---------- 477 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + ++ + G VD L+ E KL++E+ +L+ + Sbjct: 478 --------LPICFILDKMEKVGIKVDANYLKQLSAEFGAEILKLEEEIFALSGTK-FNIG 528 Query: 235 CLEKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + +T +L + + + ++ Sbjct: 529 SPKQLGEILFEKMQLPFGKVSAKASSYSTGAEILEKLSEHGYNIANLLLRWRQLTKLKNT 588 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 ++L + +++ + T ++ TGR S QN+P S + Sbjct: 589 YTDSLPKQIDNITKRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNK----------- 637 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R IA +G KL+ AD + IE R+L+ +A +AF +D++ Sbjct: 638 --------------IRQAFIAEKGYKLISADYSQIELRILSHIANIDALKQAFINKDDIH 683 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + FN+ ++T + R K + G++ Sbjct: 684 TQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS----------- 718 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A + K + ++ V E + Sbjct: 719 -------------------AFGLAKQLNVTNGKASEYIKKYFAEYKGVQEYMEQTKAFA- 758 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 +N + GR + + + + R Sbjct: 759 -------------------------SSNGYVTNFFGRKCFVPLIHDKK-----LKQFAER 788 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCET-PDTDEF 642 +Q + DI+ M+N K +VL +HDE++ E + E Sbjct: 789 AAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPVEEVEI 842 Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++ +M + S +P+ E + Sbjct: 843 IIPIIKKIMEN--STNIDVPIITEIRAGNNWM 872 >gi|260494128|ref|ZP_05814259.1| DNA polymerase I [Fusobacterium sp. 3_1_33] gi|260198274|gb|EEW95790.1| DNA polymerase I [Fusobacterium sp. 3_1_33] Length = 912 Score = 253 bits (647), Expect = 6e-65, Method: Composition-based stats. Identities = 96/692 (13%), Positives = 211/692 (30%), Gaps = 145/692 (20%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCV----ILFAFGFDDHPVELWDCVHDPVMPQVL-- 57 L ID E + ++ K + Y + + + +D + + H ++ + + Sbjct: 340 LIIDSE--NGLNEQKEYLSNYKKIASIYYESLGIILSTEDKDL-YFPLNHGGLLAKNIDK 396 Query: 58 ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA--- 111 + D+ +++N K+ NL I +++A Sbjct: 397 NLVVNFISELDIKFISYN-------FKSLLNLGIKFKSMYMDMMIAYHLISSQTKIDPII 449 Query: 112 -VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + E L + + I Y + A Y + Sbjct: 450 PITEYSTLEPKDFKTAFGKINVELITAQDFSKYLSDISIGILAIFNELNYLLKKEDL--- 506 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + L E L + + +G +DV + +D E ++++ + Sbjct: 507 ----YKILMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEAG-EE 561 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF++ L T+ +T VL + ++ + + ++ Sbjct: 562 FNINSPKQLGDVLFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLK 621 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 ++TL ++ + R+ T +G + TGR S QN+P + + Sbjct: 622 TTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIPVKTDDGIK--------- 671 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R +A EGK L+ D + +E RVL M+ ++ ++A++ +D Sbjct: 672 ----------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKD 715 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 L+ T R FN++ ++ Sbjct: 716 LHDLTARRIFNLSDSET------------------------------------------- 732 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + NF + A E K + +++ RV+ E+ + Sbjct: 733 VSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTSFEREVIEF 792 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 E+ + + GR + + T Q Sbjct: 793 GEE--------------------------HGYVKTLFGRKRYISGIDSKN---KTIKSQA 823 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPDTDEF 642 R ++Q + ++L + M+ K ++L VHDE++ E + Sbjct: 824 ERMA------VNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEENSVE 877 Query: 643 NASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 S + +M + + + L K + Sbjct: 878 KYSEILADIMKNTVQL-EDVKLNININIGKNW 908 >gi|301300333|ref|ZP_07206538.1| DNA-directed DNA polymerase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852069|gb|EFK79748.1| DNA-directed DNA polymerase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 416 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 77/511 (15%), Positives = 167/511 (32%), Gaps = 114/511 (22%) Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 +++ ++E S + + G VD T+ + ++L+QE+ + Sbjct: 10 LDLYTKIERPLSI------VLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAG- 62 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + L + T+ +T VL + ++P + R ++ Sbjct: 63 EEFNLNSPKQLGVILFEKLKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQ-LAK 121 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + L++ ++ T + TGR S QN+P + Sbjct: 122 IQSTYIEGLLKVVSKKDGKAHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRK------- 174 Query: 346 LPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +R + S G ++ +D + IE RVLA ++ ++ +AF+ Sbjct: 175 ------------------IRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKE 216 Query: 405 GEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G D++ +T R FNV P +VT + R K + + Y + + ++ Sbjct: 217 GMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGIS-----DYGLSQNIGISRKQ 271 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 ++ + + +++ + E E+ + Sbjct: 272 AKQFIDTYLDTFSGVKDYMEKIVEFAKENGYVETIF------------------------ 307 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 +RR +P + + R+ +N+ Sbjct: 308 -----------------NRRRYLPDIKSRNFNLRSF---------------AERTAMNSP 335 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 + K+ +Q ++L E ++L VHDE++ E P + Sbjct: 336 IQG---SAADIIKVAMINMQ----EMLKE-----KNLQAKMLLQVHDELIFEAPTKEIPL 383 Query: 644 ASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + +M S +PLK E + + Sbjct: 384 LEDMVPKVMDSAVK--LDVPLKVESKHGQTW 412 >gi|256027960|ref|ZP_05441794.1| DNA polymerase I [Fusobacterium sp. D11] gi|289765905|ref|ZP_06525283.1| DNA polymerase I [Fusobacterium sp. D11] gi|289717460|gb|EFD81472.1| DNA polymerase I [Fusobacterium sp. D11] Length = 912 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 96/692 (13%), Positives = 211/692 (30%), Gaps = 145/692 (20%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCV----ILFAFGFDDHPVELWDCVHDPVMPQVL-- 57 L ID E + ++ K + Y + + + +D + + H ++ + + Sbjct: 340 LIIDSE--NGLNEQKEYLSNYKKIASIYYESLGIILSTEDKDL-YFPLNHGGLLAKNIDK 396 Query: 58 ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA--- 111 + D+ +++N K+ NL I +++A Sbjct: 397 NLVVNFISELDIKFISYN-------FKSLLNLGIKFKSMYMDMMIAYHLISSQTKIDPII 449 Query: 112 -VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + E L + + I Y + A Y + Sbjct: 450 PITEYSTLEPKDFKTAFGKINVELITAQDFSKYLSDISIGILAIFNELNYLLKKEDL--- 506 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + L E L + + +G +DV + +D E ++++ + Sbjct: 507 ----YKILMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEAG-EE 561 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF++ L T+ +T VL + ++ + + ++ Sbjct: 562 FNINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLK 621 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 ++TL ++ + R+ T +G + TGR S QN+P + + Sbjct: 622 TTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIPVKTDDGIK--------- 671 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R +A EGK L+ D + +E RVL M+ ++ ++A++ +D Sbjct: 672 ----------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKD 715 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 L+ T R FN++ ++ Sbjct: 716 LHDLTARRIFNLSDSET------------------------------------------- 732 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + NF + A E K + +++ RV+ E+ + Sbjct: 733 VSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTSFEREVIEF 792 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 E+ + + GR + + T Q Sbjct: 793 GEE--------------------------HGYVKTLFGRKRYISGIDSKN---KTIKSQA 823 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPDTDEF 642 R ++Q + ++L + M+ K ++L VHDE++ E + Sbjct: 824 ERMA------VNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEENSVE 877 Query: 643 NASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 S + +M + + + L K + Sbjct: 878 KYSEILADIMKNTVQL-EDVKLNININIGKNW 908 >gi|83311820|ref|YP_422084.1| hypothetical protein amb2721 [Magnetospirillum magneticum AMB-1] gi|82946661|dbj|BAE51525.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 524 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 130/495 (26%), Positives = 203/495 (41%), Gaps = 82/495 (16%) Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275 + V+ + L TWL + G+ E + + +++L+ + A Q Sbjct: 77 AAFLARVFLAGASKVTKATKAADLTTWLRDQ-GVETEGVAKAAVRQMLAG--DIEGAARQ 133 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R A++++ KL +V+ DGR RG GA TGRW+G + QNLPR Sbjct: 134 AVEIRAEAAKASTAKLTAMVKCACDDGRARGLHLVYGAG-TGRWAGRLIQLQNLPRGVIK 192 Query: 336 HEELDQII---THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +L + + PL +IS +R C+I +EG + +D + IE R+ AW+ Sbjct: 193 KADLAIPLIIDGDIDLVSMLFGPPLDVISSNLRGCLIPAEGCDFIQSDFSNIEGRITAWL 252 Query: 393 AGEQWKLKAFETGEDLYVTTYARS------------FNVAPAQVTKDQRAIGKVMELALG 440 A E+WK++AF + + + + ++ GKV ELALG Sbjct: 253 ANEEWKIQAFRDFDAGTGRDLYLIGAEKILTLLKVLYAHPLNENSPERTPYGKVPELALG 312 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 + GG AFQ MA+ G+ Sbjct: 313 FGGGVGAFQSMAAIYGM---------------------------------------KVTD 333 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +++K AWR+ H RV LW + A I N +++ + V L + Sbjct: 334 EEADQIKVAWREAHPRVVALWRNMEDAAFNAISNPGRVVSTAGGRIKYV---VKGGFLWM 390 Query: 561 MLPSGRSLVYRDVGNNR--------------------SYLNTTTRQLTREYTYGGKLTEN 600 +LPSGR L Y + +N+ TR+ R TYGG L EN Sbjct: 391 VLPSGRPLAYAHPRIEKRRPAWNIGQDEIKLKDTITFMAVNSITRKWERCTTYGGSLAEN 450 Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660 +QA++RD+LA ++ AGY +V+ VHDE + E + +M P+WA G Sbjct: 451 AIQAIARDLLANALLKLEAAGYPVVIHVHDEALAEVRKG-VGSVDEFKSIMCDTPAWAAG 509 Query: 661 LPLKAEGYESKRYRK 675 LP+ A G+ RYRK Sbjct: 510 LPVAAAGWRGSRYRK 524 >gi|289549017|ref|YP_003474005.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484] gi|289182634|gb|ADC89878.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484] Length = 575 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 117/713 (16%), Positives = 202/713 (28%), Gaps = 202/713 (28%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEAL 61 LF+D ET + L G + L D LKE L Sbjct: 24 VLFLDTETTGD---------------RLRLVQLG-GQGEIFLLDLFELGERGVLFLKELL 67 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALKLS 119 V V HN F+ L I + T+V ++ +L++V Sbjct: 68 SQKGV--VGHNLKFDLKYLYRYH---IEPYAVFDTMVASQLLAELDRHSLQSVAMHY--- 119 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 L K R + EY DV V R++F L Sbjct: 120 ---------LGQVLDKSLQLSDWGSRVLTKAQ------LEYAALDVVVVRDLFPILLEKL 164 Query: 180 SKEQELWYLD--------------------------QTINDRGYCVDVALAHTLNQIVDV 213 ++ + + G VD ++ + Sbjct: 165 NQCPVREEILLKTRTSRVFGLQNPVAIVEMAFVQEVAKLELNGLPVDTQELESVFREYSR 224 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT 270 + ++ + ++L +L GL L + +T + LS + Sbjct: 225 KVQRM---IMDFISTHRVDPMSPKQLGEFLTRRLGLDLPKTEKGNVSTDDKALSEHAH-H 280 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 P + R AS+ + KL + E + R+ + +GA TGR + QN+P Sbjct: 281 PVVRHILEIR--ASKKILDKLEEIRENLR-GNRVYPEFKQIGA-VTGRMASSNPNVQNIP 336 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 + +R A EG V+AD + IE R+ A Sbjct: 337 KD-------------------------------LRRIFKAEEGNLFVIADFSQIELRIAA 365 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 GE ++AF+ G DL+ T + +TK++R + K + L Y AK + Sbjct: 366 EYVGEIRMIRAFQEGRDLHRYTASILLGKREEDITKEERQLAKAVNFGLIYGISAKGLSQ 425 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 A+T G++L + +++ + Sbjct: 426 YAATYGIDLP---------------------------------------VEEAQAIRERF 446 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + N + + ++T ++ + + Sbjct: 447 FSYFEGFRDWHNRVKEELKKTGKSSGHTLLGRSYVAHTF--------------------- 485 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG--MMN--ATKAG--YDI 624 +Q D+L M++ K G + Sbjct: 486 ------------------------PDAVNYPIQGTGADLLKLAVLMLDAELRKEGIPAKV 521 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKG-LPLKAEGYESKRYRK 675 V VHDEIV E P L M S +P++ E +R+ K Sbjct: 522 VNLVHDEIVLECPQEVAQEVQTLLERAMKRAGSIILKRVPVEVEVTVKERWEK 574 >gi|34762572|ref|ZP_00143567.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887738|gb|EAA24812.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 627 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 89/663 (13%), Positives = 199/663 (30%), Gaps = 143/663 (21%) Query: 31 ILFAFGFDDHPVELWDCVHDPVMPQVL-----KEALENTDVTIVAHNSYFERTVLKACFN 85 + +D + H ++ + + + ++ +++N VL Sbjct: 84 LGIIISTEDKD-FYFPLNHGGLLAKNIDKNLVVNFISELNIKFISYNFK----VLLN-LG 137 Query: 86 LDIPIHRWICTLVLARSNGLPSALKA----VGEALKLSSQ--KMEEGKELIARFCKGETH 139 ++ +++A + E KL + K GK I + Sbjct: 138 INFKSMYMD--MMIAYHLISSQTKIDPIIPITEYSKLEPKDFKTAFGKINIELITAQDFS 195 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 + L + L K D + L E L + + +G + Sbjct: 196 KYLSATSIGILAIYDELNYLLKKED---------LYKILMENEMPLIQVLSLMERKGIEI 246 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256 D+ + +D E ++++ + + ++L LF++ L T+ Sbjct: 247 DIQYFKNYSLELDKELLRIEKAIYEEAG-EEFNINSPKQLGDILFVKLNLPSGKKTKTGY 305 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL + ++ + + ++ ++TL ++ + R+ T +G + T Sbjct: 306 STDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENSRIHTTFNQIG-TAT 364 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + + +R +A GK L Sbjct: 365 GRLSSSDPNLQNIPVKTDDGIK-------------------------IREGFVAGAGKVL 399 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + D + +E RVL M+ ++ ++A+ +DL+ T R FN++ + Sbjct: 400 MSIDYSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDTET------------ 447 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + NF + A E Sbjct: 448 -------------------------------VSREQRTIAKIINFSIIYGKTPFGLAKEL 476 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 K + +++ +V+ E+ + E+ Sbjct: 477 KIPVKDASEYIKKYFEQYPKVTSFEREVIEFGEE-------------------------- 510 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 + + GR + + T Q R ++Q + ++L + M+ Sbjct: 511 HGYVKTLFGRKRYISGIDSKN---KTIKSQAERMA------VNTVIQGTAAEVLKKVMVK 561 Query: 617 A-----TKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYES 670 K ++L VHDE++ E + S + +M + + + L Sbjct: 562 VYDVLKDKEDITLLLQVHDELIFEVEENSVEKYSEILADIMKNTVQL-EDVKLNININIG 620 Query: 671 KRY 673 K + Sbjct: 621 KNW 623 >gi|291461229|ref|ZP_06600302.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693] gi|291378194|gb|EFE85712.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693] Length = 514 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 89/622 (14%), Positives = 189/622 (30%), Gaps = 134/622 (21%) Query: 73 SYF----ERTVLKACFNLDIPIHRWI-----CTLVLARSNGLPSALKAVGEALKLSSQKM 123 F + + F + + ++ + + + + S + Sbjct: 2 IKFIAELDIKFISYNFKALLNLGFTFKSMYMDMMIAYHLISSQTKMDVLLPITEYSKVEA 61 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK--RLEPLSSK 181 ++ K + + R N D + + K L Sbjct: 62 KDFKTTFGKTHIETLLVDEFARYLSNIGLGIL-----ACYD-EINHLLHKEELHNILIQN 115 Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E L + + +G +DV+ + ++ E K ++ + + ++L Sbjct: 116 EMPLIPVLSLMERKGIKIDVSYFKNYSLELEKELAKTEKAIYEEAG-EEFNINSPKQLGD 174 Query: 242 WLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF++ L T+ +T VL + ++ + + ++ ++TL + Sbjct: 175 ILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPNLV 234 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +S+ R+ + +G + TGR S QN+P + + Sbjct: 235 DSNSRIHTSFNQIG-TATGRLSSSEPNLQNIPVKTDDGIK-------------------- 273 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R +A EGK L+ D + +E RVL M+ ++ +KA+ +DL+ T R FN Sbjct: 274 -----IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIKAYREEKDLHDLTARRIFN 328 Query: 419 V-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 + VT++QR I Sbjct: 329 LSDSDDVTREQRTIA--------------------------------------------K 344 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 NF + A E K + +++ RV+ E+ + E+ Sbjct: 345 IINFSIIYGKTAFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIEFGEE------- 397 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 + + GR + + T Q R Sbjct: 398 -------------------HGYVKTLFGRKRYISGIDSKN---KTIKAQAERMA------ 429 Query: 598 TENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLM 651 ++Q + ++L + M+ K ++L VHDE++ E + S + +M Sbjct: 430 VNTVIQGTAAEVLKKVMLKVYEVLKDKDDIALLLQVHDELIFEVEENSVEKYSEILADIM 489 Query: 652 TSNPSWAKGLPLKAEGYESKRY 673 + + + L K + Sbjct: 490 KNTVKL-EDVNLNININTGKNW 510 >gi|15674124|ref|NP_268299.1| DNA polymerase I [Lactococcus lactis subsp. lactis Il1403] gi|18202780|sp|Q9CDS1|DPO1_LACLA RecName: Full=DNA polymerase I; Short=POL I gi|12725200|gb|AAK06240.1|AE006442_7 DNA polymerase I [Lactococcus lactis subsp. lactis Il1403] Length = 877 Score = 253 bits (646), Expect = 8e-65, Method: Composition-based stats. Identities = 99/701 (14%), Positives = 191/701 (27%), Gaps = 170/701 (24%) Query: 6 IDFE--TRSPID----------LTKCGICKYAEDVCVILFAFGFDDHPVEL----WDCVH 49 IDFE T I L G + E + AF + + D + Sbjct: 310 IDFEIVTDGSISEKVNADDFFYLETLGENYHREQ----IVAFAWGNAEKIYVSKNIDLLT 365 Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIPIHRWICTLVLARSNGLP 106 P+ ++ VL + ++++P+ + ++ Sbjct: 366 KMKFPEN-----------------TYDFKKNRVLLSHLDIELPLVK-FDAMLAKYLISTT 407 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 K+ L E K + LF + Sbjct: 408 ------------EDNKISTIARLFNSGHLATDEEIFGKGTKIALPDDAVLFEHLARKIKV 455 Query: 167 VTREIFKRLEPLSSKEQELW---------YLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + K + L EQE + + G V + + + Sbjct: 456 LALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENEEKLAS 515 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI 274 L +E+ L + ++L LF + L + T+ +T VL L+P Sbjct: 516 LTREIYDLAG-EEFNINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDVLEDLAALSPVVA 574 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ R ++ + L+ + DG++ ++TGR S QN+P Sbjct: 575 KILEYRQ-INKVQSTYVKGLIPQIADDGKIHTRYVQD-LTQTGRLSSVDPNLQNIPVRLE 632 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 + +R + S+ L+ +D + IE RVLA ++G Sbjct: 633 EGRK-------------------------IRKAFVPSKDSLLLSSDYSQIELRVLAHISG 667 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF+ G D++ +T R F + VT + R K + + Y Sbjct: 668 DEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGVVYGIS-----DFGL 722 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L + + E + + + + + + + + Sbjct: 723 ARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRK--IPDINAR 780 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + + G A K Sbjct: 781 NFNVRGF---AERTAINSPIQGSAADILKI------------------------------ 807 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 K +RD ++L VHDEI+ Sbjct: 808 ----------------AMINLDKAL------SARD-----------FKSKLLLQVHDEII 834 Query: 634 CETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 + P + +L M A +PLK + K + Sbjct: 835 LDVPLEELDEIKVLVKQTMEEAIELA--VPLKVDENTGKTW 873 >gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] Length = 583 Score = 253 bits (646), Expect = 8e-65, Method: Composition-based stats. Identities = 108/705 (15%), Positives = 207/705 (29%), Gaps = 185/705 (26%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 + +D ET + L +D PV + DC + L A+ Sbjct: 28 KVIAVDTETTGLDP----------HTCQLRLIQLAAEDLPVLVIDCFSFLPEGRELINAI 77 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-----ALKAVGEAL 116 +T V N+ F+ L LDI T++ ++ LKA+ + Sbjct: 78 LSTSGVKVFQNAKFDLQFL---MALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHY 134 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 L+ +E ++ E Y D + + K + Sbjct: 135 -LNEDLDKE------------------EQTSNWQGELTESQILYAARDAEILLRLRKVMI 175 Query: 177 PLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE---- 223 P E + RG +D L + + ER EL Sbjct: 176 PQILENHLTQIAEIEFRCVKAMAHLEYRGIYLDRQKWQELYEKTEAERKTALDELYTYVE 235 Query: 224 --------SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275 ++ + ++ + E G+ + T ++ L ++ P Sbjct: 236 RPLMQMSLWGEDVAINQNFESQQFVLNVLHEHGIPV----AATAKQDLYPHR-RHPLVKT 290 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + R +A++S L ++ GRL ++ +GR S Q +PR S Sbjct: 291 LLSYR-KAAKSISAFLQPFTPLIHPVTGRLHPRYGQ-ISAWSGRMSCWNPNIQQIPRDSE 348 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 R+C A G+KL++AD + IE RV A ++G Sbjct: 349 -----------------------------FRACFAAPPGRKLILADYSQIELRVAAQISG 379 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + A++ GEDL++ T + + +++ +R K + L + GA Q+ A Sbjct: 380 DTRMISAYQQGEDLHLLTASLVAHKPIEEISPQERQAAKAVNFGLIFGMGAPGLQQYAQQ 439 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 ++ + + + Sbjct: 440 N--------------------------------------YGVEMSLEQATEFRERFFKAY 461 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + + +GR VY + Sbjct: 462 TGIHRWHQSIKAHLPK----------------------------EGRTLAGRKFVYYE-- 491 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM-MNATKA---GYDIVLTVHD 630 VQ + DI+ + + + + IV VHD Sbjct: 492 ----------------KAGLPGYYNTPVQGTAADIVKKALGLLIERLAGTDTYIVGIVHD 535 Query: 631 EIVCETPDTDEFN-ASMLYHLMTSNP-SWAKGLPLKAEGYESKRY 673 EI+ E+P + A++L M + +P K + S+ + Sbjct: 536 EILLESPAEEAHTMAALLKSTMEEAANAILPKVPTKVDVLVSESW 580 >gi|296129813|ref|YP_003637063.1| DNA polymerase I [Cellulomonas flavigena DSM 20109] gi|296021628|gb|ADG74864.1| DNA polymerase I [Cellulomonas flavigena DSM 20109] Length = 908 Score = 253 bits (645), Expect = 8e-65, Method: Composition-based stats. Identities = 96/673 (14%), Positives = 175/673 (26%), Gaps = 147/673 (21%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKACFNL 86 A +D + L L + H + L Sbjct: 351 GDAWGVAVADGAGQAVAYDLTAIDPADETALAAWLADPQRPKALHAAKEASHALA---GR 407 Query: 87 DIPIHRW-ICTLVLARSNGLP---SALKAVG-----EALKLSSQKMEEGKELIARFCKGE 137 + + T + A L + L L + Sbjct: 408 GLDLEGVTFDTELAAYLCQPDRRAYDLPDLAIGYLRRELGGDDGSSAGQGALDLEVDGAD 467 Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197 R L GE T E L + + G Sbjct: 468 EGRRAAVRAAAVRDLVDVLGGEVADRGATTLLS---------DLELPLQAVLARLERTGI 518 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257 +D A L + D + + ++ V + ++L+ LF + + +T Sbjct: 519 AIDHAYLSGLEREFDGQVQGAAADAYAVIGREV-NLGSPKQLQEVLFDQLRMPKTKRIKT 577 Query: 258 ---TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T L+ + P + +R + L+ ++ DGR+R T Q Sbjct: 578 GYTTDANALTDLFARTGHPFLEHLLAHRDAIRLRQT--VEGLLRSVADDGRIRTTFQQTI 635 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 A+ TGR S QN+P + + +R + Sbjct: 636 AA-TGRLSSADPNLQNIPIRTDAGR-------------------------QIRRAFVVGP 669 Query: 373 GK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 G L+ AD + IE R++A ++G++ + AF +GEDL+ +R F V +VT R+ Sbjct: 670 GYATLLTADYSQIEMRIMAHLSGDEGLIAAFRSGEDLHSYVGSRVFGVPTDEVTPTMRSK 729 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K M L Y + L + Sbjct: 730 IKAMSYGLAYG-----LSSYGLSQQLAIEVS----------------------------- 755 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + ++ V + + T Sbjct: 756 ----------EAAALMTDYFERFGGVRDYLTGVVDQARAT-------------------- 785 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 GR D+ ++ R +Q + D++ Sbjct: 786 ------GYTATVLGRRRYLPDLTSDN---RQRREAAERMALNAP------IQGSAADLIK 830 Query: 612 EGMMNAT----KAG--YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN----PSWAKG 660 M+ + G ++L VHDE+V E + + L M + P Sbjct: 831 VAMLGVDGELTRRGLRSRMLLQVHDELVLEVAEGEREEVEELVRTQMAAAGSGLPDGPLD 890 Query: 661 LPLKAEGYESKRY 673 +PL + + Sbjct: 891 VPLDVSVGVGESW 903 >gi|139437104|ref|ZP_01771264.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC 25986] gi|133776751|gb|EBA40571.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC 25986] Length = 916 Score = 253 bits (645), Expect = 8e-65, Method: Composition-based stats. Identities = 99/589 (16%), Positives = 174/589 (29%), Gaps = 119/589 (20%) Query: 92 RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 R T+V A + EA + GE R Sbjct: 436 RIFDTVVAAYLLDSDRS--EFDEAYLADTYLQMALPAACGAEGAGEDAPAPAARTAALTL 493 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 E + RE + L + + G VD H+L++ + Sbjct: 494 ALVAPLRE------CMARENAANVFDGIEM--PLVPVLAKMERAGMLVDPDRLHSLSEGL 545 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTE----TTCQRVLSS 265 + T++++ + L + +L LF GL + T+ +T +VLS Sbjct: 546 ATQITEVERSIRDLAGDETFNIGSPMQLSHVLFDVMGLPTKGLKKTKRGYYSTNAKVLSD 605 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + + + S+ L+TL DGR+ T + TGR S Sbjct: 606 LARDHEIVRLIL-DWREKSKIKSTYLDTLGPLRRGDGRVHTTYNQ-TITATGRLSSSDPN 663 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S V++ A EG + D + IE Sbjct: 664 LQNIPTRSELGRT-------------------------VKTAFSAGEGSVFLAVDYSQIE 698 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA ++G++ ++AF GED + T AR F V ++VT D R+ K + + Y Sbjct: 699 LRLLAHLSGDEHLVRAFNEGEDFHAETAARVFGVPVSEVTPDLRSRAKAVNFGIVYGQ-- 756 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 Q + L+++ + E + F + + + G R Sbjct: 757 ---QAYGLSQSLHISMAEARDMIDRYYEAYPGVRTFLDNVVARAKQTGYAETMYGR--RR 811 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + K+ ++ + G A K Sbjct: 812 HIPELKAKNPQLRGFG---ERTAMNHPMQGTAADIIKI---------------------- 846 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 + +R+L E + ++ Sbjct: 847 -------------AMARVSRRLEEE-------------GFAA---------------HMI 865 Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 L VHDE+ E P + +M+ +M +PL AE + Sbjct: 866 LQVHDELDFECPVDEVERLTAMVRDVMEHVVD--LRVPLIAEASTGITW 912 >gi|296327892|ref|ZP_06870428.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155026|gb|EFG95807.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 911 Score = 253 bits (645), Expect = 1e-64, Method: Composition-based stats. Identities = 90/688 (13%), Positives = 213/688 (30%), Gaps = 137/688 (19%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCV----ILFAFGFDDHPVELWDCVHDPVMPQVL-- 57 L ID E + ++ K + Y + + + +D + H ++ + + Sbjct: 339 LIIDNE--NSLNEQKEYLTNYKKIASIYYEGLGIILSTEDKD-FYFPLNHGGLLAKNIDR 395 Query: 58 ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + + D+ +++N L + ++ ++ + + + Sbjct: 396 NLVVKFISELDIKFISYNFK----ALLN-LGISFK-SMYMDMMIAYHLISSQTKIDPIIP 449 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S + ++ K + + + + + Y + + + Sbjct: 450 ITEYSKLEPKDFKTAFGKVNVELITAQDFSKYLS--DISIGILAIYDELNYL--LKKEDL 505 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + L E L + + +G +DV + ++ E K+++ + + Sbjct: 506 YKILMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELEKELLKVEKAIYEEAG-EEFNIN 564 Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF++ L T+ +T VL + ++ + + ++ + Sbjct: 565 SPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYV 624 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 +TL ++ + R+ + +G + TGR S QN+P + + Sbjct: 625 DTLPLLVDENSRIHTSFNQIG-TATGRLSSSEPNLQNIPVKTDDGIK------------- 670 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R IA EGK L+ D + +E RVL M+ ++ ++A+ +DL+ Sbjct: 671 ------------IREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLHDL 718 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T R FN+ ++ + Sbjct: 719 TARRIFNLPDSET-------------------------------------------VSRE 735 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 NF + A E K + +++ RV+ E+ + E+ Sbjct: 736 QRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIEFGEE- 794 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + + GR + + T Q R Sbjct: 795 -------------------------HGYVKTLFGRKRYISGIDSKN---KTIKSQAERMA 826 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPDTDEFNAS- 645 ++Q + ++L + M+ K ++L VHDE++ E S Sbjct: 827 ------VNTVIQGTAAEVLKKVMVKVYDILKDKEDIALLLQVHDELIFEVEKNSVEKYSG 880 Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +L +M + + + L K + Sbjct: 881 ILADIMKNTVQL-EDVKLNININIGKNW 907 >gi|326407724|gb|ADZ64795.1| DNA polymerase I [Lactococcus lactis subsp. lactis CV56] Length = 877 Score = 253 bits (645), Expect = 1e-64, Method: Composition-based stats. Identities = 99/701 (14%), Positives = 190/701 (27%), Gaps = 170/701 (24%) Query: 6 IDFE--TRSPID----------LTKCGICKYAEDVCVILFAFGFDDHPVEL----WDCVH 49 IDFE T I L G + E + AF + + D + Sbjct: 310 IDFEIVTDGSISEKVNADDFFYLETLGENYHREQ----IVAFAWGNAEKIYVSKNIDLLT 365 Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIPIHRWICTLVLARSNGLP 106 P+ ++ VL + ++++P+ + ++ Sbjct: 366 KMKFPEN-----------------TYDFKKNRVLLSHLDIELPLVK-FDAMLAKYLISTT 407 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 K+ L E K + LF + Sbjct: 408 ------------EDNKISTIARLFNSGHLATDEEIFGKGTKIALPDDAVLFEHLARKIKV 455 Query: 167 VTREIFKRLEPLSSKEQELW---------YLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + K + L EQE + + G V + + + Sbjct: 456 LALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENEEKLAS 515 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI 274 L +E+ L + ++L LF + L + T+ +T VL L+P Sbjct: 516 LTREIYDLAG-EEFNINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDVLEDLAALSPVVA 574 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ R ++ + L+ + DG++ ++TGR S QN+P Sbjct: 575 KILEYRQ-INKVQSTYVKGLIPQIADDGKIHTRYVQD-LTQTGRLSSVDPNLQNIPVRLE 632 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 + +R + S+ L+ +D + IE RVLA ++G Sbjct: 633 EGRK-------------------------IRKAFVPSKDSLLLSSDYSQIELRVLAHISG 667 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF+ G D++ +T R F + VT + R K + + Y Sbjct: 668 DEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGVVYGIS-----DFGL 722 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L + + E + + + + + + + + Sbjct: 723 ARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRK--IPDINAR 780 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + + G A K Sbjct: 781 NFNVRGF---AERTAINSPIQGSAADILKI------------------------------ 807 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 K +RD ++L VHDEI+ Sbjct: 808 ----------------AMINLDKAL------SARD-----------FKSKLLLQVHDEII 834 Query: 634 CETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 + P + L M A +PLK + K + Sbjct: 835 LDVPLEELDEIKALVKQTMEEAIELA--VPLKVDENTGKTW 873 >gi|288817697|ref|YP_003432044.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6] gi|288787096|dbj|BAI68843.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6] gi|308751295|gb|ADO44778.1| DNA-directed DNA polymerase [Hydrogenobacter thermophilus TK-6] Length = 576 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 113/698 (16%), Positives = 208/698 (29%), Gaps = 172/698 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEAL 61 LF+D ET S + L G ++ V + D LK+ L Sbjct: 24 YLFLDTETVSE---------------KIRLVQLG-NNEDVFIVDLFETGSYGVDFLKDLL 67 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSAL-----KAVGE 114 + + V HN ++ L I + T++ ++ G +L +GE Sbjct: 68 VDKGI--VGHNLKYDLKFLYRY---GIEPYAVFDTMIASQLLGELDRHSLQKVAMHYLGE 122 Query: 115 ALKLSSQKMEEGKE-LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR--EI 171 L S Q G+ L + + R+ + + + + TR + Sbjct: 123 VLDKSLQMSNWGRAVLSKEQLEYAALDVKMVRDLYSILLDKLNSTAHQEETLLKTRTSRV 182 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 F P++ E + G VD+ L + K E Sbjct: 183 FGLKNPVAIIEMAFVQEVAKLELNGIGVDIKELEDLIREYKKNLNKKVMEFMMHYRID-- 240 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 ++L L GL L + +T ++LS + R ++ + Sbjct: 241 -PLSPKQLGELLSKRLGLDLPKTEKGNISTDDKILSQFIH-HKPVQMILEIR--MTKKLL 296 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 KL+ + + DG + + +GA TGR S QN+PR Sbjct: 297 DKLDEIRSFV-KDGSVYPEFKQIGA-ITGRMSSLNPNVQNIPRD---------------- 338 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 +R A EGK LV++D + IE R+ + G++ +KAF G+DL Sbjct: 339 ---------------LRGVFKAREGKVLVISDFSQIELRIASEYVGDERMIKAFREGKDL 383 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + T + ++K++R + K + L Y A+ A + G++ Sbjct: 384 HRYTASVLLGKKEEDISKEERQLAKAVNFGLIYGISARGLSDYAKSYGID---------- 433 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 ++++ + + E + + Sbjct: 434 -----------------------------LSVDDAQKIRDRFFEYFRSFKEWHERVKREL 464 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 +Q + + + Sbjct: 465 KQLGGSRGYTLLGRSYVAHTF--------------------------------------- 485 Query: 589 REYTYGGKLTENIVQAVSRDILAEG--M----MNATKAGYDIVLTVHDEIVCETPDTDEF 642 +Q D+L M + K +V VHDEIV E Sbjct: 486 ------PDAVNYPIQGTGADLLKLSVLMFDAEIKREKIEAHVVNLVHDEIVVEC---QME 536 Query: 643 NASMLYHLMTSNPSWA-----KGLPLKAEGYESKRYRK 675 A ++ L+ A K +P++ E ++R+ K Sbjct: 537 KAQLVRDLLERAMKHAGRVVLKQVPVEVESTINERWLK 574 >gi|237744288|ref|ZP_04574769.1| DNA polymerase I [Fusobacterium sp. 7_1] gi|229431517|gb|EEO41729.1| DNA polymerase I [Fusobacterium sp. 7_1] Length = 912 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 96/692 (13%), Positives = 210/692 (30%), Gaps = 145/692 (20%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCV----ILFAFGFDDHPVELWDCVHDPVMPQVL-- 57 L ID E ++ K + Y + + + +D + H ++ + + Sbjct: 340 LIIDSE--DALNEQKEYLSNYKKIASIYYESLGIILSTED-KNLYFPLNHGGLLAKNIDK 396 Query: 58 ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA--- 111 + D+ +++N K+ NL I +++A Sbjct: 397 NLVVNFISELDIKFISYN-------FKSLLNLGIKFKSMYMDMMIAYHLISSQTKIDPII 449 Query: 112 -VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + E L + + I Y + A Y + Sbjct: 450 PITEYSTLEPKDFKTAFGKINVELITAQDFSKYLSDISIGILAIFNELNYLLKKEDL--- 506 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + L E L + + +G +DV + +D E ++++ + Sbjct: 507 ----YKILMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEAG-EE 561 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF++ L T+ +T VL + ++ + + ++ Sbjct: 562 FNINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLK 621 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 ++TL ++ + R+ T +G + TGR S QN+P + + Sbjct: 622 TTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIPVKTDDGIK--------- 671 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R +A EGK L+ D + +E RVL M+ ++ ++A++ +D Sbjct: 672 ----------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKD 715 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 L+ T R FN++ ++ Sbjct: 716 LHDLTARRIFNLSDSET------------------------------------------- 732 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + NF + A E K + +++ RV+ E+ + Sbjct: 733 VSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTSFEREVIEF 792 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 E+ + + GR + + T Q Sbjct: 793 GEE--------------------------HGYVKTLFGRKRYISGIDSKN---KTIKSQA 823 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPDTDEF 642 R ++Q + ++L + M+ K ++L VHDE++ E ++ Sbjct: 824 ERMA------VNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEESSVE 877 Query: 643 NASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 S + +M + + + L K + Sbjct: 878 KYSRILADIMKNTVQL-EDVKLNININIGKNW 908 >gi|269797839|ref|YP_003311739.1| DNA polymerase I [Veillonella parvula DSM 2008] gi|269094468|gb|ACZ24459.1| DNA polymerase I [Veillonella parvula DSM 2008] Length = 873 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 90/590 (15%), Positives = 163/590 (27%), Gaps = 125/590 (21%) Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 R ++A L RF D Sbjct: 400 KTARVHDMSLIAYLLDPTRTN------YGYL--------YLTERFSVPSIASGSVDVECV 445 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + +A E E++ E + E L + + G +D Sbjct: 446 SMVKALLAMNEAACESARRE-ELWSLYE---TIELPLIHTLVVMEKNGIYIDTEKLAETT 501 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 E ++ QE+ L + ++L LF + L + T+ +T VL Sbjct: 502 TRFKEELAQVQQEIYELAG-ENFNINSPKQLGVILFEKMNLPIIKKTKTGYSTDAEVLDM 560 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + +P ++ R ++ L +N R T + TGR S Sbjct: 561 LRHESPIVEKILAYR-SVAKLVSTYCEGLAVLINDKTRRIHTTFNQMVTATGRLSSSDPN 619 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGI 384 QN+P + E +R+ G LV AD + I Sbjct: 620 LQNIPVRTEKGRE-------------------------IRALFYPGAGYDTLVSADYSQI 654 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA ++G++ +KAF G+D++ T A A VT ++R+ K + + Y Sbjct: 655 ELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKAQDDVTSEERSHAKAINFGIIYGIS 714 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 + L + + + + + M + E G E Sbjct: 715 -----DFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMFGRQRE 769 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 R + R + + T G A K Sbjct: 770 LPDINSRNFNRR-----SFAERTAMNTPIQGTAADIIKL--------------------- 803 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 +N ++L + + Sbjct: 804 --------------AMNQMEQKLEEQNF----------------------------KSRL 821 Query: 625 VLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 +L VHDE+V E +++ L M S +PL + + ++ + Sbjct: 822 LLQVHDELVLEVVNSELEAIEELLRNTMQSVVE--LQVPLIVDVHHAENW 869 >gi|310778664|ref|YP_003966997.1| DNA polymerase I [Ilyobacter polytropus DSM 2926] gi|309747987|gb|ADO82649.1| DNA polymerase I [Ilyobacter polytropus DSM 2926] Length = 903 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 95/662 (14%), Positives = 202/662 (30%), Gaps = 146/662 (22%) Query: 32 LFAFGFDDHPVELWDCVHD----PVMPQVLKEALENTDVTIVAHNSYF-ERTVLKACFNL 86 + HD L + + D+ +++ F + Sbjct: 364 GISVTLKSGN-YYMPLSHDYIGSENNSIELLKKFLSADIEFISY--KFKDIL----NEGY 416 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALK------LSSQKMEEGKELIARFCKGETHE 140 +I ++ A +++ L K GKE ++ E E Sbjct: 417 EIKNIH-FDVMI-AYFLLTAQTKESIEVVLHNETGDDFPLYKDIFGKEDPSKLPVEEYGE 474 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 + R++ + L D ++F +E + + G +D Sbjct: 475 FMMKRSESLYDIYKDLKNRIELED---MHDLFYNVEMKL------ILILSKMEQEGIAID 525 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 + + + +L + + ++ + ++L LF++ + T+ + Sbjct: 526 PEYFREFSLELSDKLQELKKNIFKISE-EEFNLNSPKQLAEILFMKLNIEPVSKTKTGFS 584 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL + + + + + + ++ ++ L + + RL T GA+ TG Sbjct: 585 TNVDVLETLRDRGEKIAEYILDYRKLTKLQSTYVDALPKLADERNRLHTTFNQTGAA-TG 643 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P S + +R I+ +G L+ Sbjct: 644 RLSSSNPNLQNIPVKSDEGIK-------------------------IRRGFISDKGNTLL 678 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 D + IE RVLA ++ ++ +KA+ G DL+ T + F++ Sbjct: 679 AIDYSQIELRVLAELSKDETLIKAYSDGLDLHDLTAKKIFDIDTD--------------- 723 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + NF + + E Sbjct: 724 ------------------------------VTRSQRTMAKIVNFSIIYGKTPFGLSKELG 753 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + K + +++ RV EL ++ + E+T Sbjct: 754 ISQKDAKEYIKRYFEQYPRVKELEEKIIKNAEET-------------------------- 787 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 + GR + + +Q R ++Q + DIL + M+ Sbjct: 788 GYVKTYFGRKRSVDGISSKN---GNIKKQADRMA------VNTVIQGTAADILKKVMIEI 838 Query: 618 TKAGYD-----IVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESK 671 K D + L VHDE++ E D A ++ ++M ++ + K + L+A + K Sbjct: 839 DKKIKDKNDIKMNLQVHDELIFEVKDESVEKYADLIKNIMENSIKF-KNVKLEANVAQGK 897 Query: 672 RY 673 + Sbjct: 898 NW 899 >gi|283783098|ref|YP_003373852.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05] gi|283441155|gb|ADB13621.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05] Length = 1025 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 92/663 (13%), Positives = 189/663 (28%), Gaps = 144/663 (21%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP---IHRWICTLVLARSNG 104 D + ++L++ L+ V H+ +LK+ D + T + + Sbjct: 467 SSDQALLEMLRKFLQKNSSITVLHDYKKHLGLLKSLKLFDSNNSFGTPLLDTRLASYLLE 526 Query: 105 LPS---ALKAVGEAL----------KLSSQKMEEGKELIARF--CKGETHECLYDRNKPN 149 L+ + E + K E LI E + + Sbjct: 527 PDFRAETLENMAEHYLDIQSVEDNLGENEAKQGELDLLIDNEVSSSEEETNEKQTQAREA 586 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 L T + K+ ++ E + + + + D G VD+ + + Sbjct: 587 KFLKTALLIRLLALHFASTLDDRKQTGLMTDLEMPISRVLRGMEDVGAAVDMQRLSGMLK 646 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLS- 264 + + V + + ++L+ LF GL T+ TT L Sbjct: 647 QFSADAEFAQNMAWKVAGSSV-NLQSPKQLQQILFEHFGLKPTRRTKNGSYTTNAEALQA 705 Query: 265 ---SNKKLTPQAIQV--FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 P + + ++ + + +L++A + D R T + TGR Sbjct: 706 MYVKLDPEEPASQFLGALLKHRETNKLKQI-VQSLIDAAHYDDRRIHTTFEQTIAATGRL 764 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVV 378 S QN+P + + E +R+ I E + L+ Sbjct: 765 SSADPNLQNIPNRNAAGRE-------------------------IRAAFIPGEEFEYLMS 799 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 D + +E R++A + ++ ++AF +G D + + + + QVT DQR+ K M Sbjct: 800 CDYSQVELRIMAHASHDKTLIEAFRSGVDFHKYVASLVYKIPVEQVTPDQRSHVKAMSYG 859 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 L Y L+++ Sbjct: 860 LAYG-----LSTYGLAKQLSISPA------------------------------------ 878 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 E +K + V + L ++ Sbjct: 879 ---EAEMLKNKYFDTFGNVHDYLESLVSKAKE--------------------------LG 909 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 GR + + +N + R +Q + DI+ M+ Sbjct: 910 YTETMFGRRRYFPQLSSNN---RASREAAERGALNAP------IQGTAADIMKLAMLRVD 960 Query: 619 ------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESK 671 K ++L +HDE++ E ++ + M + +PL Sbjct: 961 LGLREAKVRSRVILQIHDELILEISHGEQAQVENIVRKAMENAVH--LDVPLSVSTGVGV 1018 Query: 672 RYR 674 ++ Sbjct: 1019 DWQ 1021 >gi|19704040|ref|NP_603602.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714234|gb|AAL94901.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 911 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 84/657 (12%), Positives = 201/657 (30%), Gaps = 131/657 (19%) Query: 31 ILFAFGFDDHPVELWDCVHDPVMPQVL-----KEALENTDVTIVAHNSYFERTVLKACFN 85 + +D + H ++ + + + + D+ +++N L Sbjct: 368 LGIILSTEDKD-FYFPLNHGGLLAKNIDRNLVVKFISELDIKFISYNFK----ALLN-LG 421 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 + ++ ++ + + + + S + ++ K + + + Sbjct: 422 ISFK-SMYMDMMIAYHLISSQTKIDPIIPITEYSKLEPKDFKTAFGKVNVELITAQDFSK 480 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 + + Y + + + + L E L + + +G +DV Sbjct: 481 YLS--DISIGILAIYDELNYL--LKKEDLYKILMENEMPLIPVLSLMERKGIEIDVQYFK 536 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262 + ++ E K+++ + + ++L LF++ L T+ +T V Sbjct: 537 NYSLELEKELLKVEKAIYEEAG-EEFNINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMV 595 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L + ++ + + ++ ++TL ++ + R+ + +G + TGR S Sbjct: 596 LEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENSRIHTSFNQIG-TATGRLSSS 654 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 QN+P + + +R IA EGK L+ D + Sbjct: 655 EPNLQNIPVKTDDGIK-------------------------IREGFIAGEGKVLMSIDYS 689 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 +E RVL M+ ++ ++A+ +DL+ T R FN+ ++ Sbjct: 690 QVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLPDSET------------------ 731 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + NF + A E Sbjct: 732 -------------------------VSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKD 766 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 K + +++ RV+ E+ + E+ + + Sbjct: 767 ASEYIKKYFEQYPRVTTFEKEVIEFGEE--------------------------HGYVKT 800 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----- 617 GR + + T Q R ++Q + ++L + M+ Sbjct: 801 LFGRKRYISGIDSKN---KTIKSQAERMA------VNTVIQGTAAEVLKKVMVKVYDILK 851 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 K ++L VHDE++ E S +L +M + + + L K + Sbjct: 852 DKEDIALLLQVHDELIFEVEKNSVEKYSGILADIMKNTVQL-EDVKLNININIGKNW 907 >gi|297243661|ref|ZP_06927592.1| DNA polymerase I [Gardnerella vaginalis AMD] gi|296888412|gb|EFH27153.1| DNA polymerase I [Gardnerella vaginalis AMD] Length = 1025 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 92/661 (13%), Positives = 190/661 (28%), Gaps = 144/661 (21%) Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP---IHRWICTLVLARSNGLP 106 D + ++L++ L+ V H+ +LK+ D + T + + Sbjct: 469 DRALLEMLRKFLQKNSSITVLHDYKKHLGLLKSLKLFDSNNSFGTPLLDTRLASYLLEPD 528 Query: 107 S---ALKAVGEAL----------KLSSQKMEEGKELIARF--CKGETHECLYDRNKPNHR 151 L+ + E + K E LI E + + + Sbjct: 529 FRAETLENMAEHYLDIQSDEDNLGENEAKQGELDLLIDDETPASEEENNEKQTQAREAKF 588 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 L T + K+ ++ E + + + + D G VD+ + + Sbjct: 589 LRTALLIRLLALHFASTLDDRKQTGLMTDLEMPISRVLRGMEDVGAAVDMQRLSGMLKQF 648 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLS--- 264 + + V + + ++L+ LF GL T+ TT L Sbjct: 649 SADAEFAQNMAWKVAGSSV-NLQSPKQLQQILFEHFGLKPTRRTKNGSYTTNAEALQAMY 707 Query: 265 -SNKKLTPQAIQV--FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 P + + ++ + + +L++A + D R T + TGR S Sbjct: 708 VKLDPEEPASQFLGALLKHRETNKLKQI-VQSLIDAAHYDDRRIHTTFEQTIAATGRLSS 766 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVAD 380 QN+P + + E +R+ I E + L+ D Sbjct: 767 ADPNLQNIPNRNAAGRE-------------------------IRAAFIPGEEFEYLMSCD 801 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + +E R++A + ++ ++AF +G D + + + + QVT DQR+ K M L Sbjct: 802 YSQVELRIMAHASHDKTLIEAFRSGADFHKYVASLVYKIPVEQVTPDQRSHVKAMSYGLA 861 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y L+++ Sbjct: 862 YG-----LSTYGLAKQLSISPA-------------------------------------- 878 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 E +K + V + L ++ Sbjct: 879 -EAEMLKNKYFDTFGNVHDYLESLVSKAKE--------------------------LGYT 911 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-- 618 GR + + +N + R +Q + DI+ M+ Sbjct: 912 ETMFGRRRYFPQLSSNN---RASREAAERGALNAP------IQGTAADIMKLAMLRVDLG 962 Query: 619 ----KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 K ++L +HDE++ E ++ + M + +PL + Sbjct: 963 LREAKVRSRVILQIHDELILEISHGEQEQVENIVRKAMENAVH--LDVPLNVSTGVGVDW 1020 Query: 674 R 674 + Sbjct: 1021 Q 1021 >gi|270290448|ref|ZP_06196673.1| DNA polymerase I [Pediococcus acidilactici 7_4] gi|270281229|gb|EFA27062.1| DNA polymerase I [Pediococcus acidilactici 7_4] Length = 885 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 98/659 (14%), Positives = 200/659 (30%), Gaps = 130/659 (19%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERT---VLKACF 84 FA G D LW ++ + L E L N V + N F+ V Sbjct: 339 EFCGFAIGTDKE---LWVSDDVELLREPALSEILANQKVVV---NV-FDGKRTYVGLHRL 391 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + + + L+ + +G+ L + + + D Sbjct: 392 GVTLNSINY-DILLQSYLLDTNDNSNDLGQ-LAHEHDIEDIKTDAEVYGTGAKRAVPAKD 449 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVA 202 + + GE + + E+ + + EL + + G VD Sbjct: 450 VLLEHLAHKIDVIGELGRR---LQEELINNQQADLYWKIELPLSIVLAKMEISGIKVDRE 506 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + ++L+ ++ + ++L LF + + T+ +T Sbjct: 507 RLGAMQSELTERLSELESQIHQEAG-EEFNINSPKQLGHILFEKLEFPVIKKTKTGYSTA 565 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + +P + + R ++ ++ L++ ++S + T ++TGR Sbjct: 566 VNVLEKLRGYSPIIDHILDYR-TIAKIKSTYVDGLLKVIHSTDQKVHTTYQQTLTQTGRL 624 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVV 378 S QN+P ++ +R + S EG ++ Sbjct: 625 SSTDPNLQNIPIRIEEGKK-------------------------IRQAFVPSHEGWHILS 659 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN-VAPAQVTKDQRAIGKVMEL 437 +D + IE RVLA + G+ +AF+ ED++ +T R F ++VT + R K + Sbjct: 660 SDYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQAKAVNF 719 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y + + ++ ++ +E+ + + E E + Sbjct: 720 GIVYGIS-----DYGLSQNIGISRKDAKRFIDTYFKEYPGVKKYVDGSVETAREKGYVET 774 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 A +RR +P ++ Sbjct: 775 I-----------------------------------------AHRRRYLPDIHASNFSVR 793 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R+ +NT + K+ +Q Sbjct: 794 SF---------------AERTAMNTPIQG---SAADIIKIAMINMQ-----------NEL 824 Query: 618 TKA--GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 K ++L VHDE++ E PD + L +M S +PLK E + Sbjct: 825 EKRQLKTRMLLQVHDELIFEVPDEEMSVIKELVPKVMDSAIK--LDVPLKVETSWGNNW 881 >gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51] gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 578 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 108/705 (15%), Positives = 207/705 (29%), Gaps = 185/705 (26%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 + +D ET + L +D PV + DC + L A+ Sbjct: 23 KVIAVDTETTGLDP----------HTCQLRLIQLAAEDLPVLVIDCFSFLPEGRELINAI 72 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-----ALKAVGEAL 116 +T + N+ F+ L LDI T++ ++ LKA+ + Sbjct: 73 LSTSGIKIFQNAKFDLQFL---MALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHY 129 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 L+ +E ++ E Y D + + K + Sbjct: 130 -LNEDLDKE------------------EQTSNWQGELTESQILYAARDAEILLRLRKVMI 170 Query: 177 PLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE---- 223 P + + RG +D L + + ER EL Sbjct: 171 PQILENHLTQIAGIEFRCVKAMAHLEYRGIYLDRQKWQELYEKTEAERKTALDELYTYVE 230 Query: 224 --------SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275 ++ + ++ + E G+ + T ++ L + P Sbjct: 231 RPLMQMSLWGEDVAINQNFESQQFVLNVLHEHGIPV----AATAKQDLYPYR-RHPLVKT 285 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + R +A++S L ++ GRL ++ +GR S Q +PR S Sbjct: 286 LLSYR-KAAKSISAFLQPFTPLIHPVTGRLHPRYGQ-ISAWSGRMSCWNPNIQQIPRDSE 343 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 R+C A G+KL++AD + IE RV A ++G Sbjct: 344 -----------------------------FRACFAAPPGRKLILADYSQIELRVAAQISG 374 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + A++ GEDL++ T + + A++T +R K + L + GA Q+ A Sbjct: 375 DTRMISAYQQGEDLHLLTASLVAHKPIAEITPQERQAAKAVNFGLIFGMGAPGLQQYAQQ 434 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 ++ + + + Sbjct: 435 N--------------------------------------YGVEMSLEQATEFRERFFKAY 456 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + + +GR VY + Sbjct: 457 TGIHRWHQSIKAHLPK----------------------------EGRTLAGRKFVYYE-- 486 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM-MNATKA---GYDIVLTVHD 630 VQ + DI+ + + + + IV VHD Sbjct: 487 ----------------KAGLPGYYNTPVQGTAADIVKKALGLLIERLAGTDTYIVGIVHD 530 Query: 631 EIVCETPDTDEFN-ASMLYHLMTSNP-SWAKGLPLKAEGYESKRY 673 EI+ E+P + A++L M + +P K + S+ + Sbjct: 531 EILLESPAEEAHTMAALLKSTMEEAANAILPKVPTKVDVLVSESW 575 >gi|327198385|ref|YP_004306959.1| DNA polymerase I [Streptococcus phage Dp-1] gi|314912687|gb|ADT64078.1| DNA polymerase I [Streptococcus phage Dp-1] Length = 779 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 96/752 (12%), Positives = 207/752 (27%), Gaps = 149/752 (19%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----------P 54 ID ET + + H M P Sbjct: 87 SIDVETDGLDTI----------HDELAGVCLYSPSQKGIYAPVNHVSNMTKMRIKNQISP 136 Query: 55 QVLKEALE---NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSAL 109 + +K+ L+ ++ + ++ HNS F+ + + + W T + A +L Sbjct: 137 EFMKKMLQRIVDSGIPVIYHNSKFDMKSIYWRLGVKMNEPAW-DTYLAAMLLNENESHSL 195 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 K++ K + + P + Y D T Sbjct: 196 KSL------------HSKYVRNEENAEVAKFNDLFKGIPFSLIPPDVAYMYAAYDPLQTF 243 Query: 170 EIFKRLEPLSSKEQELWY--------------------LDQTINDRGYCVDVALAHTLNQ 209 E+++ E + E + + G +D + + Sbjct: 244 ELYEFQEQYLTPGTEQCEEYNLEKVSWVLHNIEMPLIKVLFDMEVYGVDLDQDKLAEIRE 303 Query: 210 IVDVERTKLDQELESL--------------------------TYGLVSSSRCLEKLKTWL 243 + +QE + L + S +L Sbjct: 304 QFTANMNEAEQEFQQLVSEWQPEIEELRQTNFQSYQKLEMDARGRVTVSISSPTQLAILF 363 Query: 244 FLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + GL + + T + ++ + + ++ D Sbjct: 364 YDIMGLKSPERDKPRGTGESIVEHFDND---ISKALLKYRKYAKLVSTYTTLDQHLAKPD 420 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 R+ T + GA +TGR S QN+P Sbjct: 421 NRIHTTFKQYGA-KTGRMSSENPNLQNIPSRGE--------------------------G 453 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 VR ASEG ++ +D + E R LA ++G++ A+E DLY ++ + V Sbjct: 454 AVVRQIFAASEGHYIIGSDYSQQEPRSLAELSGDESMRHAYEQNLDLYSVIGSKLYGVPY 513 Query: 422 AQV------------TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 + K +R K + L L Y GA + + +N++ Sbjct: 514 EECLEFYPDGTTNKEGKLRRNSVKSVLLGLMYGRGANSIAEQ-----MNVSVKEANKVIE 568 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 E+ ++ ++Q+ + G + + + Sbjct: 569 DFFTEFPKVADYIIFVQQQAQDLGYVQTATGRRRRLPDMSLPEYEFEYIDASKNEDFDPF 628 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL-T 588 + + + + + D+ ++ + + Sbjct: 629 NFDADQQMDDTVPEHIIEKYWAQLDRAWGFKKKQ--------EIKDQAKAEGILIKDNGG 680 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETP-DTDE 641 + + +++Q + D+ M+ + G+ +++ VHDE++ E P + Sbjct: 681 KIADAQRQCLNSVIQGTAADMTKYAMIKVHNDAELKELGFHLMIPVHDELLGEVPIKNAK 740 Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 A L +M LP+K + +R+ Sbjct: 741 RGAERLTEVMIEAAKDIISLPMKCDPSIVERW 772 >gi|304384670|ref|ZP_07367016.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284] gi|304328864|gb|EFL96084.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284] Length = 885 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 98/659 (14%), Positives = 200/659 (30%), Gaps = 130/659 (19%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERT---VLKACF 84 FA G D LW ++ + L E L N V + N F+ V Sbjct: 339 EFCGFAIGTDKE---LWVSDDVELLREPALSEILANQKVVV---NV-FDGKRTYVGLHRL 391 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + + + L+ + +G+ L + + + D Sbjct: 392 GVTLNSINY-DILLQSYLLDTNDNSNDLGQ-LAHEHDIEDIKTDAEVYGTGAKRAVPAKD 449 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVA 202 + + GE + + E+ + + EL + + G VD Sbjct: 450 VLLEHLAHKIDVIGELGRR---LQEELINNQQADLYWKIELPLSIVLAKMEISGIKVDRE 506 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + ++L+ ++ + ++L LF + + T+ +T Sbjct: 507 RLGAMQSELTERLSELESQIHQEAG-EEFNINSPKQLGHILFEKLEFPVIKKTKTGYSTA 565 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + +P + + R ++ ++ L++ ++S + T ++TGR Sbjct: 566 VNVLEKLRGYSPIIDHILDYR-TIAKIKSTYVDGLLKVIHSTDQKVHTTYQQTLTQTGRL 624 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVV 378 S QN+P ++ +R + S EG ++ Sbjct: 625 SSTDPNLQNIPIRIEEGKK-------------------------IRQAFVPSHEGWHILS 659 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN-VAPAQVTKDQRAIGKVMEL 437 +D + IE RVLA + G+ +AF+ ED++ +T R F ++VT + R K + Sbjct: 660 SDYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQAKAVNF 719 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y + + ++ ++ +E+ + + E E + Sbjct: 720 GIVYGIS-----DYGLSQNIGISRKDAKRFIDTYFKEYPGVKKYVDGSVETAREKGYVET 774 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 A +RR +P ++ Sbjct: 775 I-----------------------------------------AHRRRYLPDIHASNFSVR 793 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R+ +NT + K+ +Q Sbjct: 794 SF---------------AERTAMNTPIQG---SAADIIKIAMINMQ-----------NEL 824 Query: 618 TKA--GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 K ++L VHDE++ E PD + L +M S +PLK E + Sbjct: 825 EKRQLKTRMLLQVHDELIFEVPDEEMSVIKELVPKVMDSAIK--LDVPLKVETSWGNNW 881 >gi|298529592|ref|ZP_07016995.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1] gi|298511028|gb|EFI34931.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1] Length = 845 Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats. Identities = 89/507 (17%), Positives = 155/507 (30%), Gaps = 120/507 (23%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E L + + G +D+A + V L + SL + R + Sbjct: 443 MQELEMPLVPVLCRMESAGIGIDLAAFDNFLRQVKKSLDDLTASIYSLAG-KEFNIRSTQ 501 Query: 238 KLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 + LF E GL +T VL S ++ + R + L Sbjct: 502 QTAQVLFDELGLKARRKTPKGAYSTSNVVLESMRRDHDIVDLILQYR-TLEKLRSTYLEP 560 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L ++ GRL T L A+ TGR S QN+P Sbjct: 561 LPRKVDVGGRLHTTFNQL-ATATGRLSSSNPNLQNIPIKGE------------------- 600 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R+C S+GK LV AD + IE R+LA M+ + L+AF ED++ T Sbjct: 601 ------FGPRMRACFKPSKGKLLVAADYSQIELRILAHMSMDPNLLQAFGGNEDIHRRTA 654 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 F+ +V++D+R K + G+ + Sbjct: 655 GLLFDKDIQEVSQDERRKAKTIN--------------FGLLYGMGPQKLS---------- 690 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 E + + K RV + + ++ + + E Sbjct: 691 --------------------RELSISMEEAKEFISVYFSKLDRVRDFYQQIEE---KAQE 727 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 G GR + D+ + + + R+ Sbjct: 728 QGYVTTMA-----------------------GRRRLLPDINSRNTNMAQQARR------- 757 Query: 594 GGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETP-DTDEFNASM 646 ++Q + D++ + M+ G +VL VHDE++ E + Sbjct: 758 --TAVNTVIQGSAADVIKKAMLAVDSDSELRSLGSVMVLQVHDELLLEVDAPVAQKAGER 815 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 L +M S +PL E + + Sbjct: 816 LARVMAGVES--LEVPLLVEWGTGENW 840 >gi|281492801|ref|YP_003354781.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147] gi|281376453|gb|ADA65939.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147] Length = 877 Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats. Identities = 93/679 (13%), Positives = 184/679 (27%), Gaps = 158/679 (23%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVEL----WDCVHDPVMPQVLKEALENTDVTIVAH 71 L G + E + AF + + D + P+ Sbjct: 332 LETLGENYHREQ----IVAFAWGNAEKIYVSKNIDLLTKMKFPEN--------------- 372 Query: 72 NSYFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 ++ VL + ++++P+ + ++ K+ Sbjct: 373 --TYDFKKNRVLLSHLDIELPLVK-FDAMLAKYLISTT------------EDNKISTIAR 417 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW-- 186 L E K + LF + + K + L EQE Sbjct: 418 LFNSGHLATDEEIFGKGTKIALPDDAVLFEHLARKIKVLALAKEKMMAELLENEQEHLLS 477 Query: 187 -------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 + + G V + + + L +E+ L + ++L Sbjct: 478 DMELPLAEVLAKMEITGIAVSQNTLEEIGAENEEKLASLTREIYDLAG-EEFNINSPKQL 536 Query: 240 KTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L + T+ +T VL L+P ++ R ++ + L+ Sbjct: 537 GVILFEKLQLPVGKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQ-INKVQSTYVKGLIP 595 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + DG++ ++TGR S QN+P + Sbjct: 596 QIADDGKIHTRYVQD-LTQTGRLSSVDPNLQNIPVRLEEGRK------------------ 636 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R + S+ L+ +D + IE RVLA ++G++ + AF+ G D++ +T R Sbjct: 637 -------IRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRV 689 Query: 417 FNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F + VT + R K + + Y L + + E + Sbjct: 690 FGIEKAEDVTANDRRNAKAVNFGVVYGIS-----DFGLARNLGITRKDAKNYIETYFERY 744 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + + + + + + ++ V + + G Sbjct: 745 PGIKTYMENIVREARDKGFVETMSHRRRK--IPDINARNFNVRGF---AERTAINSPIQG 799 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 A K Sbjct: 800 SAADILKI----------------------------------------------AMINLD 813 Query: 596 KLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSN 654 K +RD ++L VHDEI+ + P + L M Sbjct: 814 KAL------SARD-----------FKSKLLLQVHDEIILDVPLEELDEIKALVKQTMEEA 856 Query: 655 PSWAKGLPLKAEGYESKRY 673 A +PLK + K + Sbjct: 857 IELA--VPLKVDENTGKTW 873 >gi|160934851|ref|ZP_02082237.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753] gi|156866304|gb|EDO59676.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753] Length = 857 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 102/658 (15%), Positives = 190/658 (28%), Gaps = 142/658 (21%) Query: 23 KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82 Y E+ + AF V L L +++ HNS L Sbjct: 330 AYGEEGEITQCAF-LKSDTVHLV-TEGAEKAVMGLCSL---EGMSLCVHNSKPLFAWLDR 384 Query: 83 CFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 ++ A +LK + E ++ K+E A Sbjct: 385 MGG---EARVSYDAMLAAYLLNPNASDYSLKRLQEEAGTAAPKLENETAWQAAVLPRVK- 440 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 W+ + + L E L + + + G+ V Sbjct: 441 -------------NWQAASLLA----------NGQRKLLEEMEIPLAQVLARMENIGFLV 477 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256 D + ++ E L +++ + ++L LF++ GL T+ Sbjct: 478 DGESIRVYGERLETEIEALQKQIYEEVGY-EFNINSPKQLGDALFVKLGLPSGKKTKTGY 536 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T +L + P V + R ++ +++ + DGR+ +RT Sbjct: 537 STNAEILEKLRYDHPAVELVLHYR-TLTKLKSTYCEGMLKVIGPDGRIHSNFNQ-TETRT 594 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + EL R +A EG L Sbjct: 595 GRISSTEPNLQNIPVRTELGREL-------------------------RKFFLAKEGWVL 629 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V AD + IE RVLA +A ++ +KAF+ ED++ T ++ F + P VT R+ K + Sbjct: 630 VDADYSQIELRVLAHIAHDENMIKAFQDKEDIHTITASQVFGMPPEMVTPLMRSRAKAVN 689 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y GA + + +N++ + + + + + + E E + Sbjct: 690 FGIVYGIGA-----FSLSKDINVSRKEAQRYIDDYLTLYSGVDRYMKEVVEKAKEDGYVE 744 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 R + + + G A K Sbjct: 745 TLFHR--RRYLPELTASNFNLRAFG---ERVARNMPIQGTAADIIKI------------- 786 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 + R+L RE + + Sbjct: 787 ----------------------AMVRVDRRLKRENMRARLI-----------------LQ 807 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 E++ E P+ + A+ + M S +P+ AE K + Sbjct: 808 VHD-----------ELIVEAPEDEAEQAARILTEEMEGAVS--LTVPMVAEASVGKTW 852 >gi|325068714|ref|ZP_08127387.1| DNA polymerase I [Actinomyces oris K20] Length = 945 Score = 251 bits (640), Expect = 4e-64, Method: Composition-based stats. Identities = 102/705 (14%), Positives = 186/705 (26%), Gaps = 156/705 (22%) Query: 8 FET----RSPIDLTKCGIC------KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV- 56 ET G+ D ++ + D + D ++P+ Sbjct: 355 LETSLPADGDNGTRPLGVDVVGVLRPVEGDAALVSLS---DGSRAVVVDLT--EILPEDE 409 Query: 57 --LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 L L + + + ++ L L + + + Sbjct: 410 AALARLLADVERPKLVADAKGSWHALS-ARGLTLD-GVVADPSLAGYLCRPEQRSYDVDT 467 Query: 112 VGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + + L + + EG GE+ + + + + Sbjct: 468 LTQRWLGIDLAAVNEG-GAGGDGGSGESQSAFDLEALTSEAVPASHLASAGRAAALLPLQ 526 Query: 171 I----FKRLEPLS----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + E + + D G VD A+ +D E Sbjct: 527 VVLDEQMVARDALGLFTDLEMPVAATLTVMEDAGIAVDDAVLQIRQTELDARV-THAAEG 585 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKL--TPQAIQVF 277 G + ++L+ LF E + T+T T L+ P + Sbjct: 586 AYAAAGRELNLSSPKQLQAVLFDELKMPKTRKTKTGYTTDADALAGLYAKTSHPFLEHLL 645 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R + L +A+ DGR+ T Q A+ TGR S QN+P Sbjct: 646 EHRDAIKLRQT--VEGLRKAIQPDGRIHTTFQQTIAA-TGRLSSTDPNLQNIPARHEEGM 702 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQ 396 +R EG + L+ AD + IE R++A ++ +Q Sbjct: 703 R-------------------------IREAFTVGEGYECLMTADYSQIEMRIMAHLSADQ 737 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF +GEDL+ A + VT QR+ K M L Y Sbjct: 738 ALIDAFRSGEDLHRYVAALVHGIDVEDVTAQQRSHVKAMSYGLAYG-----LSTFGLARQ 792 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A+ + + Sbjct: 793 ---------------------------------------LGIDNADAADLRNAYFARFGK 813 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + L EQ +G GR D+ ++ Sbjct: 814 VHDY---LESVVEQARRDGYTETM-----------------------FGRRRYLPDLTSD 847 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 R +Q + DI+ + M++ A I+L +HD Sbjct: 848 N---RQRREMAERAALNAP------IQGSAADIVKKAMIDVDSALTERALASRILLQIHD 898 Query: 631 EIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E++ E + +L M +PL + +R Sbjct: 899 ELLIEVAPGEAEAVENLLKEQMGGAAE--LSVPLDVAVGRGRTWR 941 >gi|227495255|ref|ZP_03925571.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436] gi|226831707|gb|EEH64090.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436] Length = 893 Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats. Identities = 93/636 (14%), Positives = 184/636 (28%), Gaps = 143/636 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 + L++ L + V + H + R + C +I + A G +L Sbjct: 381 KELEDLLTSHAV--ITHEAKRLRHAFREC-GFEI-GELAEDVELEAYLLGPDQREYSLPT 436 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L ++ H ++ T ++ Sbjct: 437 LSEKY-LQRSLPVAESAQLSLLRDFSELAGQAQVVYDLHEVLFKQLE---------TTQL 486 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + E + + G + + + + L + + + ++ + V Sbjct: 487 AELYR---GLELPVQADLYELEKHGVAMSMDVLNQLLEELTEQVEVAEEAAYNAIGHKV- 542 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK--LTPQAIQVFNNRMRASRS 286 + +L+T LF E + T+ TT L + P + +R + Sbjct: 543 NLASPMQLQTVLFEELQMPKTKKTKRGYTTNAEALVELYEKTQHPFLQHLLAHRDKIKMR 602 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + + L+ A+ +DGR+ T Q A+ TGR S QN+P + Sbjct: 603 QI--VEGLISAVGADGRIHTTFQQTVAA-TGRLSSTEPNLQNIPARTAEGMR-------- 651 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +R + G L+ AD + IE R++A M+ ++ ++AF++G Sbjct: 652 -----------------IRGAFVPGTGFDYLLTADYSQIEMRLMAHMSKDEALIEAFKSG 694 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 EDL+ T A F V +VT R+ K L Y + L Sbjct: 695 EDLHRTMAAMVFAVPVEEVTPALRSQIKATSYGLAYG-----LSSYGLSQQLG------- 742 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 ++K+ + ++ V E+ Sbjct: 743 --------------------------------ISVPEARKLKEKYFERFGGVGRFLGEVV 770 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + + GR D+ + + Sbjct: 771 EEARE--------------------------RGFTATMMGRRRYLPDLNSGNT---NLRA 801 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDT 639 R +Q + DI+ M + ++L VHDE+V E + Sbjct: 802 MAERAALNAP------IQGTAADIIKLAMHLVMRVLRERGLASRVLLQVHDELVLEVVAS 855 Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674 + + +M+ LPL ++ Sbjct: 856 ELNEVIQIVTDVMSGAAE--LSLPLDVSFGVGASWQ 889 >gi|293192693|ref|ZP_06609647.1| DNA polymerase I [Actinomyces odontolyticus F0309] gi|292820200|gb|EFF79197.1| DNA polymerase I [Actinomyces odontolyticus F0309] Length = 908 Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats. Identities = 98/667 (14%), Positives = 189/667 (28%), Gaps = 155/667 (23%) Query: 39 DHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97 D + D P + L E L IV H++ R L + + T+ Sbjct: 362 DKEALVIDPVELSPKQEEALGEVLATASSLIV-HDAKGARHALSSR-GWTL-GGVEFDTM 418 Query: 98 VLARSNGL---PSALKA-VGEALKL-------SSQKMEEGKELIARFCKGETHECLYDRN 146 + A L+ + L + S+ + + ++ A + Sbjct: 419 LAAYLAHPDQRSHKLEDVLSRVLGVVIEEGEGDSEALFDLGDMGAGPSAAQVRAGKLAAY 478 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 R E +T E L L + D G D ++ + Sbjct: 479 LHPLASTLRSRLEESSEAALLT-----------DMEMPLSVLLGQMEDIGIAADTSVLNG 527 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVL 263 L+ + + + V + ++L+ LF GL T+T L Sbjct: 528 LSDELGKAVDAAREGAWAAAGREV-NLSSPKQLQELLFDHFGLPKTKKTKTGYTTNADAL 586 Query: 264 SSNKKL--------TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 + + +R R +++L + SDGR+ T A+ Sbjct: 587 ADLHAKTSDEGGAGHDFLGFLLTHRDRIKLKQ--MVDSLSATVASDGRIHTTFSQ-VAAA 643 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR + QN+P S +R +A EG + Sbjct: 644 TGRLASSDPNLQNIPARSADGMR-------------------------IRGAFVAGEGFE 678 Query: 376 -LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 L+ AD + IE R++A ++G++ ++AF +GEDL+ T + F A+V+ ++R+ K Sbjct: 679 SLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVAEVSAEERSRIKA 738 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 L Y L Sbjct: 739 TSYGLAYG-----LSSYGLAAQLG------------------------------------ 757 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 ++ + ++ +V + L Sbjct: 758 ---IPVPEAAALRDRYFERFGKVRDYLEGLVAQAR------------------------- 789 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 + GR D+ ++ R +Q + DI+ M Sbjct: 790 -ADGYTQTMFGRRRYLPDLRSSN---RQRREMAERAALNAP------IQGSAADIVKIAM 839 Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEG 667 +N A +++ +HDE++ E + + M + +PL Sbjct: 840 INVVDALSEAGLKSRLLVQIHDELLVEVAPGEAAAVEAIVRDRMATPVE--LSVPLDVAV 897 Query: 668 YESKRYR 674 + ++ Sbjct: 898 GVGRSWQ 904 >gi|257125590|ref|YP_003163704.1| DNA polymerase I [Leptotrichia buccalis C-1013-b] gi|257049529|gb|ACV38713.1| DNA polymerase I [Leptotrichia buccalis C-1013-b] Length = 1046 Score = 250 bits (639), Expect = 5e-64, Method: Composition-based stats. Identities = 80/614 (13%), Positives = 173/614 (28%), Gaps = 141/614 (22%) Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 I + L+ G +L+ + ++E IA F E R Sbjct: 546 FGIKCTEYFDILLARYVLG-TESLQE------IEEIILDEFGVEIATF---EEQFKKERR 595 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDR 195 K + + E+ ++ EQ L + + + Sbjct: 596 KKDFSDVSDDVVCEFLSKRTFFIYKLEIIFRNRLQNEQFLNIFDKLESRLIPVLAQMEET 655 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G +D ++ + L ++ L G + ++L LF + + T Sbjct: 656 GIKIDKKYFSEFQNELEEKINMLQSDIYKLADG-EFNIDSPQQLGEVLFEKLQIPSGKKT 714 Query: 256 E---TTCQRVLS------SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + +T VL + + + + + + + + R+ Sbjct: 715 KTGYSTNVEVLEMIANNRELTEDKRMIGKKLLEYRAYKKLLSTYIEPIPKLADKEERIHT 774 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 T G + TGR S QN+P + +R+ Sbjct: 775 TFNQNG-TSTGRLSSANPNLQNIPVRTDDGIR-------------------------IRT 808 Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 ++ EG L+ D + IE RVLA ++ ++ ++A++ +DL+ T + F Sbjct: 809 GFVSKEGHSLISFDYSQIELRVLAELSKDRHLVQAYQDNQDLHNLTARKIFFKTEED--- 865 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + + NF Sbjct: 866 ----------------------------------------EISRHERSIAKVINFSILYG 885 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + + E + + +++ RV + + + + + Sbjct: 886 KTPFGLSKELGITVQEASQYITTYFEEYPRVRKFLDIVTETAK----------------- 928 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 + + G + Q R +VQ + Sbjct: 929 ---------LHGFVETFYGTRRYISGINATN---KNVQAQAVRMA------VNTVVQGTA 970 Query: 607 RDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKG 660 +I+ + M+ + ++L VHDE++ E D + + +M + + K Sbjct: 971 ANIIKKVMIELHEEFKNDENIKMLLQVHDELIFEVRDEFAKEYMEKIEKIMENTVKF-KK 1029 Query: 661 LPLKAEGYESKRYR 674 +PLKA G +K + Sbjct: 1030 VPLKANGSVAKNWG 1043 >gi|306822947|ref|ZP_07456323.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679] gi|304553579|gb|EFM41490.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679] Length = 950 Score = 250 bits (639), Expect = 5e-64, Method: Composition-based stats. Identities = 93/616 (15%), Positives = 184/616 (29%), Gaps = 132/616 (21%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 L + +P T + +++ +A E + A + Sbjct: 442 LLESVGITLPT-PLFDTKLAGYLVHPDFHAESLEQAAGHFLDLHFEEQSSEATQGTLDLD 500 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-KEQELWYLDQTINDRGYC 198 + N +V + L E + + + G Sbjct: 501 DMDGSSNTQADELQRHAAIVDMLANVLADLLDQRAQFGLLKSIELPVSKVLYGMEHAGAQ 560 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET- 257 VD+ + + + QE+ + G + + ++L+ LF + GL T++ Sbjct: 561 VDMIRLTEMRDQFAAD-ARQAQEIAWESAGERVNLQSPKQLQKILFEDMGLKPTKKTKSG 619 Query: 258 ---TCQRVLSSNKKL-------TPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRG 306 T L + + + +R + + TL++A N DGR+ Sbjct: 620 SYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLKQI--VQTLIDATNPRDGRIHT 677 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 T + A+ TGR S QN+P + + E +RS Sbjct: 678 TFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRS 711 Query: 367 CVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + EG + L+ +D + +E R++A ++G++ ++AF +G D + + + + ++T Sbjct: 712 AFVPGEGYESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEIT 771 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 DQR+ K M L GL+ A +K Sbjct: 772 SDQRSHVKAMSYGL--------------AYGLSTYGLAQQLKI----------------- 800 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 E ++ + +V E L + Sbjct: 801 -------------SPKEAESLRNQYFATFGKVHEYLESLVSTARE--------------- 832 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 GR + + + + R +Q Sbjct: 833 -----------KGYTETIYGRRRYFPGLKSPNRAVRDA---AERAALNAP------IQGS 872 Query: 606 SRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA 658 + DI+ M+ A+ I+L +HDE+V E + A+ L M + A Sbjct: 873 AADIMKIAMIRASDSLRDACLKSRIILQIHDELVVEIAPGEAEQATALVRNAMEHAVTMA 932 Query: 659 KGLPLKAEGYESKRYR 674 +PL A ++ Sbjct: 933 --VPLDASTGIGSDWQ 946 >gi|298253854|ref|ZP_06977441.1| DNA polymerase I [Gardnerella vaginalis 5-1] gi|297531997|gb|EFH70972.1| DNA polymerase I [Gardnerella vaginalis 5-1] Length = 1015 Score = 250 bits (639), Expect = 5e-64, Method: Composition-based stats. Identities = 89/663 (13%), Positives = 196/663 (29%), Gaps = 144/663 (21%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP---IHRWICTLVLARSNG 104 D + ++L++ L+ V H+ +LK+ D + T + + Sbjct: 457 SSDQALLEMLRKFLQKNSSITVLHDYKKHLGLLKSLKLFDSNNSFGTPLLDTRLASYLLE 516 Query: 105 LPS---ALKAVGEAL--------KLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHRE 152 L+ + E L + ++G+ +L+ + E ++ Sbjct: 517 PDFRAETLENMAEHYLDIQSDEDNLGENEAKQGELDLLIDDGMPASEEETNEKQTQACEA 576 Query: 153 AWRLFGEYCKGDVT---VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 + + T + K+ ++ E + + + + D G VD+ ++ + Sbjct: 577 KFLRTTLLIRLLALHFASTLDDRKQTGLMTDLEMPISRVLRGMEDVGAAVDMQRLSSMLK 636 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLS- 264 + + V + + ++L+ LF GL T+ TT L Sbjct: 637 QFSADAEFAQNMAWKVAGSSV-NLQSPKQLQQILFEHFGLKPTRRTKNGSYTTNAEALQA 695 Query: 265 ---SNKKLTPQAIQV--FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 P + + ++ + + +L++A + D R T + TGR Sbjct: 696 MYVKLDPEEPASQFLGALLKHRETNKLKQI-VQSLIDAAHYDDRRIHTTFEQTIAATGRL 754 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVV 378 S QN+P + + E +R+ I E + L+ Sbjct: 755 SSADPNLQNIPNRNAAGRE-------------------------IRAAFIPGEEFEYLMS 789 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 D + +E R++A + ++ ++AF +G D + + + + QV+ DQR+ K M Sbjct: 790 CDYSQVELRIMAHASHDKTLIEAFRSGVDFHKYVASLVYKIPVEQVSPDQRSHVKAMSYG 849 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 L Y L+++ Sbjct: 850 LAYG-----LSTYGLAKQLSISPA------------------------------------ 868 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 E +K + V + L ++ Sbjct: 869 ---EAEMLKNKYFDTFGNVHDYLESLVSKAKE--------------------------LG 899 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 GR + + +N + R +Q + DI+ M+ Sbjct: 900 YTETMFGRRRYFPQLSSNN---RASREAAERGALNAP------IQGTAADIMKLAMLRVD 950 Query: 619 ------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESK 671 K ++L +HDE++ E ++ + M + +PL Sbjct: 951 LGLREAKVRSRVILQIHDELILEISHGEQAQVENIVRKAMENAVH--LDVPLNVSTGVGV 1008 Query: 672 RYR 674 ++ Sbjct: 1009 DWQ 1011 >gi|237741676|ref|ZP_04572157.1| DNA polymerase I [Fusobacterium sp. 4_1_13] gi|294785713|ref|ZP_06751001.1| DNA polymerase I [Fusobacterium sp. 3_1_27] gi|229429324|gb|EEO39536.1| DNA polymerase I [Fusobacterium sp. 4_1_13] gi|294487427|gb|EFG34789.1| DNA polymerase I [Fusobacterium sp. 3_1_27] Length = 912 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 83/667 (12%), Positives = 196/667 (29%), Gaps = 151/667 (22%) Query: 31 ILFAFGFDDHPVELWDCVHDPVMPQVL-----KEALENTDVTIVAHNSYFERTVLKACFN 85 + ++ + + H ++ + + + D+ +++N L Sbjct: 369 LGIIISTEEKDL-YFPLNHGGLLAKNIDKNLVVSFISELDIKFISYNFK----ALLN-LG 422 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 ++ +++A K++ ++ Sbjct: 423 INFKSMYMD--MMIAYHLISSQT-------------KIDPIIPIVEYSKLEPKDFKTAFG 467 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFK----------RLEPLSSKEQELWYLDQTINDR 195 + F +Y I+ + L E L + + + Sbjct: 468 KINVELITAQDFSKYLSAISIGILAIYDELNYLLKKEDLYKILMENEMPLIPVLSLMERK 527 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G +DV + +D E K+++ + + ++L LF++ L T Sbjct: 528 GIEIDVQYFKNYSLELDKELLKIEKAIYEEAG-EEFNINSPKQLGDILFVKLNLPSGKKT 586 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T VL + ++ + + ++ ++TL ++ + R+ T +G Sbjct: 587 KTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENSRIHTTFNQIG 646 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P + + +R +A Sbjct: 647 -TATGRLSSSDPNLQNIPVKTDDGIK-------------------------IREGFVAGA 680 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 GK L+ D + +E RVL M+ ++ ++A+ +DL+ T R FN++ ++ Sbjct: 681 GKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDSET-------- 732 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 + NF + Sbjct: 733 -----------------------------------VSREQRTIAKIINFSIIYGKTPFGL 757 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 A E K + +++ +V+ E+ + E+ Sbjct: 758 AKELKIPVKDASEYIKKYFEQYPKVTSFEREVIEFGEE---------------------- 795 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 + + GR + + T Q R ++Q + ++L + Sbjct: 796 ----HGYVKTLFGRKRYISGIDSKN---KTIKSQAERMA------VNTVIQGTAAEVLKK 842 Query: 613 GMMNA-----TKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666 M+ K ++L VHDE++ E ++ S + +M + + + L Sbjct: 843 VMVKVYDVLKDKEEIALLLQVHDELIFEVEESSVEKYSEILADIMKNTVQL-EDVKLNIN 901 Query: 667 GYESKRY 673 K + Sbjct: 902 INIGKNW 908 >gi|461960|sp|P30314|DPOL_BPSP1 RecName: Full=DNA polymerase Length = 924 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 102/763 (13%), Positives = 215/763 (28%), Gaps = 195/763 (25%) Query: 4 LFIDFETRSPID------LTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPV--- 52 + ID ET + K + Y ++ ++ H Sbjct: 209 VVIDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENLMK 268 Query: 53 ------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106 + + L++ LE D+ +AHN F+ L+A ++ + I W T+++ Sbjct: 269 GNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDISIW-DTMLI-HIIDYR 326 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + + L ++ + + + W + Y D Sbjct: 327 GERYSWSKRLAWLET------DMGGYDDALDGEKPKGEDEGNYDLIPWDILKVYLADDCD 380 Query: 167 VTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 VT + ++ P + +Y I G VD L + E Sbjct: 381 VTFRLSEKYIPLVEENEEKKWLWENIMVPGYYTLLDIEMDGIHVDREWLEVLRVSYEKEI 440 Query: 216 TKLDQELESLT---------------------------------------------YGLV 230 ++L+ ++ G Sbjct: 441 SRLEDKMREFPEGVAMEREMRDKWKERVMIGNIKSANRTPEQQDKFKKYKKYDPSKGGDK 500 Query: 231 SSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L LF GL + +T L + +V +A+ Sbjct: 501 INFGSTKQLGELLFERMGLETVIFTDKGAPSTNDDSLKFMGSQSDFV-KVLMEFRKANHL 559 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 ++ L ++ D + + G + TGR S Q PR Sbjct: 560 YNNFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRK-------------- 604 Query: 347 PTSITSDPDPLQIISDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 + L + ++ + +G +V D + +E R+L + + + + Sbjct: 605 -----VNTPTLFQYNFEIKKMFNSRFGDGGVIVQFDYSQLELRILVCYYSRPYTIDLYRS 659 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 G DL+ + +F VA +V+KDQR K ++ + YQ A+ + G+ Sbjct: 660 GADLHKAVASDAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGI------- 712 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 CE K + ++ +VS+ + Sbjct: 713 --------------------------------TMSEDECEIFIKKYFKRFPKVSKWIRDT 740 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 + + + +G + D+ + + Sbjct: 741 KKHVKD--------------------------ISTVKTLTGATRNLPDIDSIDQ---SKA 771 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPD 638 + R+ +Q D ++ + I +TVHD IV + P Sbjct: 772 NEAERQA------VNTPIQGTGSDCTLMSLILINQWLRESGLRSRICITVHDSIVLDCPK 825 Query: 639 TDE-FNASMLYHLMTSNPSWAK------GLPLKAEGYESKRYR 674 + A + H+M + + + +P+ +E + Y Sbjct: 826 DEVLEVAKKVKHIMENLGEYNEFYKFLGDVPILSEMEIGRNYG 868 >gi|86157736|ref|YP_464521.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C] gi|85774247|gb|ABC81084.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C] Length = 897 Score = 250 bits (638), Expect = 7e-64, Method: Composition-based stats. Identities = 105/670 (15%), Positives = 188/670 (28%), Gaps = 136/670 (20%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDP----------VMPQVLKEALENTDVTIVAHNSYF 75 ++ AF H + + L+ +E + + AH+ Sbjct: 338 RSAPLVGLAFA-GAGRAFYLPLGHRYLGAPAPLPAADVREGLRPLVE-AALPLHAHDLKS 395 Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALK--LSSQKMEEGKELI 130 L L T +++R AL V + +G + Sbjct: 396 AAHALAR-LGLA-RSGPGEDTELMSRLLLPTRREHALVDVARERTSCELPRSPADGAKRG 453 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190 A +G E + L + + T + E+ L + Sbjct: 454 APGLEGLEVERVAAWAGACAAALPDLAAKLAE--ALETERLGALYR---EVERPLVPVLV 508 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G VD ++ L+ + + + +L LF+E L Sbjct: 509 EMERAGILVDRGAMEGMSAEFGKAMQDLEARIHAAAGHP-FNVASTRELAQVLFVELELP 567 Query: 251 LED---LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRG 306 + +T Q VL + V +R S+ ++ L + ++ DGR+ Sbjct: 568 VVKRLKTGPSTDQDVLEKLAEQHALPRLVLEHR-SLSKLKGTYVDALPQLVDPADGRIHT 626 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 T GA+ TGR S QN+P + +S +R Sbjct: 627 TFHQAGAA-TGRLSSSDPNLQNIPVRTE-------------------------LSRRIRQ 660 Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 +A G +L+ AD + IE R+LA + + L+AF ED++ T A +F VAP QVT Sbjct: 661 AFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVAPEQVTP 720 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 DQR I KV+ + Y + L+L + + + W Sbjct: 721 DQRRIAKVLNFGIAYG-----LSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRRYIEWAV 775 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 E G A + ++ L A E+T Sbjct: 776 EEARAKGESRTLFGRA---------RAMPEIAARNPALRNAAERTA-------------- 812 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 + ++ + E Sbjct: 813 --------------------------INTPIQGTAADVVKIAMIRVHAALAQER------ 840 Query: 607 RDILAEG--MMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663 E ++ +VL E P+ + L M +PL Sbjct: 841 ----REARLLLQVHDE---LVL--------EVPERELEPVEALVRREMEGAAR--LKVPL 883 Query: 664 KAEGYESKRY 673 + + + + Sbjct: 884 EVQVGHGQTW 893 >gi|260663490|ref|ZP_05864380.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN] gi|260552031|gb|EEX25084.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN] Length = 886 Score = 250 bits (637), Expect = 7e-64, Method: Composition-based stats. Identities = 90/650 (13%), Positives = 173/650 (26%), Gaps = 119/650 (18%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 F D L D + LK+ LE+ V N+ + L +D+ Sbjct: 341 GFVIGDGKWWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR-LGVDLAGVD- 398 Query: 94 ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 L+ + +G L + + + + D H Sbjct: 399 FDLLLASYLLNTSENANDLG-VLAAAHDYHQVQTDEEVYGKGAKRAIPADDEVFFTHLAK 457 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 K + ++L E+ L + + G VD A + + Sbjct: 458 KARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGIHVDAATLKEMGSKLVE 517 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT 270 +L+Q + + ++L LF + L + T+ +T VL Sbjct: 518 REAELEQAIYQEAG-EEFNINSPKQLGVILFEKMKLPVIKKTKTGYSTAVDVLEKLADRA 576 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 P + R S+ + L++ ++ D + T + TGR S QN+P Sbjct: 577 PIVQDILAYRQ-ISKLQSTYITGLLKVIHQDDQKIHTRYLQTLTATGRLSSVDPNLQNIP 635 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVL 389 +R S G K+ +D + +E RVL Sbjct: 636 VRLEEGR-------------------------QIRRAFTPSAPGWKIFSSDYSQVELRVL 670 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAF 448 A + G++ F G+D++ T R F++ + +VT + R K + + Y Sbjct: 671 AHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYGIS---- 726 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 ++++ S +E+ E + + E + + Sbjct: 727 -DYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR------- 778 Query: 509 AWRQKHSRV--SELWNE--LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 R+ + + T G A K + Sbjct: 779 --RRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAMIR----------------- 819 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 + R ++ Sbjct: 820 --------------MEKALKERGLRARM---------------------LLQIHDE---- 840 Query: 625 VLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 +V E P+ + L +M S +PLK E + Sbjct: 841 -------LVFEAPEEEIATLEELVPSIMDSAVK--LDVPLKVESKSGATW 881 >gi|299783433|gb|ADJ41431.1| DNA-directed DNA polymerase [Lactobacillus fermentum CECT 5716] Length = 886 Score = 250 bits (637), Expect = 7e-64, Method: Composition-based stats. Identities = 90/650 (13%), Positives = 173/650 (26%), Gaps = 119/650 (18%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 F D L D + LK+ LE+ V N+ + L +D+ Sbjct: 341 GFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR-LGVDLAGVN- 398 Query: 94 ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 L+ + +G L + + + + D H Sbjct: 399 FDLLLASYLLNTSENANDLG-VLAAAHDYHQVQTDEEVYGKGAKRAIPADDEVFFTHLAK 457 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 K + ++L E+ L + + G VD A + + Sbjct: 458 KARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGIHVDAATLKEMGSKLVE 517 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT 270 +L+Q + + ++L LF + L + T+ +T VL Sbjct: 518 REAELEQAIYQEAG-EEFNINSPKQLGVILFEKMKLPVIKKTKTGYSTAVDVLEKLADRA 576 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 P + R S+ + L++ ++ D + T + TGR S QN+P Sbjct: 577 PIVQDILAYRQ-ISKLQSTYITGLLKVIHQDDQKIHTRYLQTLTATGRLSSVDPNLQNIP 635 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVL 389 +R S G K+ +D + +E RVL Sbjct: 636 VRLEEGR-------------------------QIRRAFTPSAPGWKIFSSDYSQVELRVL 670 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAF 448 A + G++ F G+D++ T R F++ + +VT + R K + + Y Sbjct: 671 AHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYGIS---- 726 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 ++++ S +E+ E + + E + + Sbjct: 727 -DYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR------- 778 Query: 509 AWRQKHSRV--SELWNE--LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 R+ + + T G A K + Sbjct: 779 --RRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAMIR----------------- 819 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 + R ++ Sbjct: 820 --------------MEKALKERGLRARM---------------------LLQIHDE---- 840 Query: 625 VLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 +V E P+ + L +M S +PLK E + Sbjct: 841 -------LVFEAPEEEIATLEELVPSIMDSAVK--LDVPLKVESKSGATW 881 >gi|256845000|ref|ZP_05550458.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2] gi|256718559|gb|EEU32114.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2] Length = 912 Score = 250 bits (637), Expect = 8e-64, Method: Composition-based stats. Identities = 83/667 (12%), Positives = 196/667 (29%), Gaps = 151/667 (22%) Query: 31 ILFAFGFDDHPVELWDCVHDPVMPQVL-----KEALENTDVTIVAHNSYFERTVLKACFN 85 + ++ + + H ++ + + + D+ +++N L Sbjct: 369 LGIIISTEEKDL-YFPLNHGGLLAKNIDKNLVVSFISELDIKFISYNFK----ALLN-LG 422 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 ++ +++A K++ ++ Sbjct: 423 INFKSMYMD--MMIAYHLISSQT-------------KIDPIIPIVEYSKLEPKDFKTAFG 467 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFK----------RLEPLSSKEQELWYLDQTINDR 195 + F +Y I+ + L E L + + + Sbjct: 468 KINVELITAQDFSKYLSAISIGILAIYDELNYLLKKEDLYKILMKNEMPLIPVLSLMERK 527 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G +DV + +D E K+++ + + ++L LF++ L T Sbjct: 528 GIEIDVQYFKNYSLELDKELLKIEKAIYEEAG-EEFNINSPKQLGDILFVKLNLPSGKKT 586 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T VL + ++ + + ++ ++TL ++ + R+ T +G Sbjct: 587 KTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENSRIHTTFNQIG 646 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P + + +R +A Sbjct: 647 -TATGRLSSSDPNLQNIPVKTDDGIK-------------------------IREGFVAGA 680 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 GK L+ D + +E RVL M+ ++ ++A+ +DL+ T R FN++ ++ Sbjct: 681 GKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDSET-------- 732 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 + NF + Sbjct: 733 -----------------------------------VSREQRTIAKIINFSIIYGKTPFGL 757 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 A E K + +++ +V+ E+ + E+ Sbjct: 758 AKELKIPVKDASEYIKKYFEQYPKVTSFEREVIEFGEE---------------------- 795 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 + + GR + + T Q R ++Q + ++L + Sbjct: 796 ----HGYVKTLFGRKRYISGIDSKN---KTIKSQAERMA------VNTVIQGTAAEVLKK 842 Query: 613 GMMNA-----TKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666 M+ K ++L VHDE++ E ++ S + +M + + + L Sbjct: 843 VMVKVYDVLKDKEEIALLLQVHDELIFEVEESSVEKYSEILADIMKNTVQL-EDVKLNIN 901 Query: 667 GYESKRY 673 K + Sbjct: 902 INIGKNW 908 >gi|315103141|gb|EFT75117.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2] Length = 892 Score = 250 bits (637), Expect = 9e-64, Method: Composition-based stats. Identities = 95/668 (14%), Positives = 185/668 (27%), Gaps = 157/668 (23%) Query: 34 AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 A D +D + + L + D H++ L ++ Sbjct: 349 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAER-GWEVAG 407 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + + A K + N Sbjct: 408 LTC-DTELASYLLHPDR------RAHKFDDAVRTHL----------NVALGEVEDNSDQA 450 Query: 151 REAW--RLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYC 198 + F E + V VT + +E E + ++ G Sbjct: 451 MLDFGEDHFAESMERAVAVT-RLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIA 509 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET- 257 VD+ + L D T+ ++ + + ++L+ LF + + T++ Sbjct: 510 VDMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRTKSG 568 Query: 258 --TCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 T L+ + P + +R ++ L++ + DGR+ T A Sbjct: 569 YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA 626 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 TGR S QN+P + +R + EG Sbjct: 627 -VTGRLSSKDPNLQNIPMRTEEGRR-------------------------IREGFVVGEG 660 Query: 374 KK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP V+ QR+ Sbjct: 661 YESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKI 720 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K M GL+ Sbjct: 721 KAMNYG--------------LAYGLS------------------------------AYGL 736 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + + + + +V E L + +Q G Sbjct: 737 SNQLKVSVGEAKELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL----------- 782 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 GR D+ + R +Q + D++ Sbjct: 783 ------------GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKL 821 Query: 613 GMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M+ + ++L VHDE++ E +E + + M +PL Sbjct: 822 AMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTV 879 Query: 666 EGYESKRY 673 + + Sbjct: 880 SIGVGRSW 887 >gi|314923227|gb|EFS87058.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1] gi|314966994|gb|EFT11093.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2] gi|315093085|gb|EFT65061.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1] gi|327327814|gb|EGE69590.1| DNA polymerase I [Propionibacterium acnes HL103PA1] Length = 892 Score = 249 bits (636), Expect = 9e-64, Method: Composition-based stats. Identities = 95/668 (14%), Positives = 185/668 (27%), Gaps = 157/668 (23%) Query: 34 AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 A D +D + + L + D H++ L ++ Sbjct: 349 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAER-GWEVAG 407 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + + A K + N Sbjct: 408 LTC-DTELASYLLHPDR------RAHKFDDAVRTHL----------NVALGEVEDNSDQA 450 Query: 151 REAW--RLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYC 198 + F E + V VT + +E E + ++ G Sbjct: 451 MLDFGEDHFAESMERAVAVT-RLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIA 509 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET- 257 VD+ + L D T+ ++ + + ++L+ LF + + T++ Sbjct: 510 VDMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRTKSG 568 Query: 258 --TCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 T L+ + P + +R ++ L++ + DGR+ T A Sbjct: 569 YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA 626 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 TGR S QN+P + +R + EG Sbjct: 627 -VTGRLSSKDPNLQNIPMRTEEGRR-------------------------IREGFVVGEG 660 Query: 374 KK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP V+ QR+ Sbjct: 661 YESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKI 720 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K M GL+ Sbjct: 721 KAMNYG--------------LAYGLS------------------------------AYGL 736 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + + + + +V E L + +Q G Sbjct: 737 SNQLKVSVGEAKELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL----------- 782 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 GR D+ + R +Q + D++ Sbjct: 783 ------------GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKL 821 Query: 613 GMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M+ + ++L VHDE++ E +E + + M +PL Sbjct: 822 AMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTV 879 Query: 666 EGYESKRY 673 + + Sbjct: 880 SIGVGRSW 887 >gi|227515613|ref|ZP_03945662.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] gi|227086043|gb|EEI21355.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] Length = 916 Score = 249 bits (636), Expect = 9e-64, Method: Composition-based stats. Identities = 90/650 (13%), Positives = 173/650 (26%), Gaps = 119/650 (18%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 F D L D + LK+ LE+ V N+ + L +D+ Sbjct: 371 GFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR-LGVDLAGVN- 428 Query: 94 ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 L+ + +G L + + + + D H Sbjct: 429 FDLLLASYLLNTSENANDLG-VLAAAHDYHQVQTDEEVYGKGAKRAIPADDEVFFTHLAK 487 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 K + ++L E+ L + + G VD A + + Sbjct: 488 KARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGIHVDAATLKEMGSKLVE 547 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT 270 +L+Q + + ++L LF + L + T+ +T VL Sbjct: 548 REAELEQAIYQEAG-EEFNINSPKQLGVILFEKMKLPVIKKTKTGYSTAVDVLEKLADRA 606 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 P + R S+ + L++ ++ D + T + TGR S QN+P Sbjct: 607 PIVQDILAYRQ-ISKLQSTYITGLLKVIHQDDQKIHTRYLQTLTATGRLSSVDPNLQNIP 665 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVL 389 +R S G K+ +D + +E RVL Sbjct: 666 VRLEEGR-------------------------QIRRAFTPSAPGWKIFSSDYSQVELRVL 700 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAF 448 A + G++ F G+D++ T R F++ + +VT + R K + + Y Sbjct: 701 AHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYGIS---- 756 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 ++++ S +E+ E + + E + + Sbjct: 757 -DYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR------- 808 Query: 509 AWRQKHSRV--SELWNE--LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 R+ + + T G A K + Sbjct: 809 --RRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAMIR----------------- 849 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 + R ++ Sbjct: 850 --------------MEKALKERGLRARM---------------------LLQIHDE---- 870 Query: 625 VLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 +V E P+ + L +M S +PLK E + Sbjct: 871 -------LVFEAPEEEIATLEELVPSIMDSAVK--LDVPLKVESKSGATW 911 >gi|171743097|ref|ZP_02918904.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC 27678] gi|283455894|ref|YP_003360458.1| DNA polymerase I [Bifidobacterium dentium Bd1] gi|171278711|gb|EDT46372.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC 27678] gi|283102528|gb|ADB09634.1| DNA polymerase I [Bifidobacterium dentium Bd1] Length = 949 Score = 249 bits (636), Expect = 1e-63, Method: Composition-based stats. Identities = 93/616 (15%), Positives = 183/616 (29%), Gaps = 132/616 (21%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 L + +P T + +++ +A E + A + Sbjct: 441 LLESVGITLPT-PLFDTKLAGYLVHPDFHAESLEQAAGHFLDLHFEEQSSEATQGTLDLD 499 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-KEQELWYLDQTINDRGYC 198 + N +V + L E + + + G Sbjct: 500 DMDGSSNTQADELQRHAAIVDMLANVLADLLDQRAQFGLLKSIELPVSKVLYGMEHAGAQ 559 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET- 257 VD+ + + + QE+ + G + + ++L+ LF + GL T++ Sbjct: 560 VDMIRLTEMRDQFAAD-ARQAQEIAWESAGERVNLQSPKQLQKILFEDMGLKPTKKTKSG 618 Query: 258 ---TCQRVLSSNKKL-------TPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRG 306 T L + + + +R + + TL++A N DGR+ Sbjct: 619 SYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLKQI--VQTLIDATNPRDGRIHT 676 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 T + A+ TGR S QN+P + + E +RS Sbjct: 677 TFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRS 710 Query: 367 CVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + EG + L+ +D + +E R++A ++G++ ++AF +G D + + + + ++T Sbjct: 711 AFVPGEGYESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEIT 770 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 DQR+ K M L GL+ A +K Sbjct: 771 SDQRSHVKAMSYGL--------------AYGLSTYGLAQQLKI----------------- 799 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 E ++ + +V E L + Sbjct: 800 -------------SPKEAESLRNQYFATFGKVHEYLESLVSTARE--------------- 831 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 GR + + + + R +Q Sbjct: 832 -----------KGYTETIYGRRRYFPGLKSPNRAVRDA---AERAALNAP------IQGS 871 Query: 606 SRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA 658 + DI+ M+ A I+L +HDE+V E + A+ L M + A Sbjct: 872 AADIMKIAMIRAADSLRDACLKSRIILQIHDELVVEIAPGEAEQATALVRNAMEHAVTMA 931 Query: 659 KGLPLKAEGYESKRYR 674 +PL A ++ Sbjct: 932 --VPLDASTGIGSDWQ 945 >gi|311064149|ref|YP_003970874.1| DNA polymerase I [Bifidobacterium bifidum PRL2010] gi|310866468|gb|ADP35837.1| PolA DNA polymerase I [Bifidobacterium bifidum PRL2010] Length = 944 Score = 249 bits (636), Expect = 1e-63, Method: Composition-based stats. Identities = 93/641 (14%), Positives = 180/641 (28%), Gaps = 140/641 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV---- 112 L+ L+ IV H + +L + LD+ W T + ++ Sbjct: 417 LQRFLDGHADRIVVHGYKEQSHILAS-LGLDLA-EPWFDTKLAGYLVQPDYHADSLEQAA 474 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 L+L ++ + K D + Sbjct: 475 SHFLQLQLDNADDVAQGQLDLSGDVDPADQRKDLLHMAMVRALADMLAAKIDEREQFRLL 534 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + +E + ++ + G VD + V+ + V + Sbjct: 535 QSIE------LPVSHVLFGMEQVGASVDFMRLTEMRDRFAVDARDAQETAWQFAGSRV-N 587 Query: 233 SRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK-------KLTPQAIQVFNNRM 281 + ++L+ LF + GL T++ T L + + +R Sbjct: 588 LQSPKQLQAVLFDDMGLKPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRE 647 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + +L++A+N D T + TGR S QN+P + E Sbjct: 648 TNKLKQI--VQSLIDAVNPDDGRIHTTFEQTVAATGRLSSVDPNLQNIPNRNAEGRE--- 702 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLK 400 +RS + EG + L+ +D + +E R++A ++G+ ++ Sbjct: 703 ----------------------IRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIE 740 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +G D + + + + +T DQR K M L GL+ Sbjct: 741 AFRSGADFHKYVASLVYGIPVDDITPDQRTHVKAMSYGL--------------AYGLSTY 786 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A +K +R+K + +V E Sbjct: 787 GLAQQLKI------------------------------SPGEADRLKSQYFATFGKVHEY 816 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 L + GR + + + Sbjct: 817 LESLVAGARE--------------------------KGYTETMFGRRRYFPGLQSPN--- 847 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 R +Q + DI+ M++A+ A I+L +HDE+V Sbjct: 848 RNIRDAAERGALNAP------IQGSAADIMKIAMIHASDALAKAKVRSRIILQIHDELVV 901 Query: 635 ETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 E + + L M A +PL ++ Sbjct: 902 EIAPGEVEQVTGLVRDAMEHAVDLA--VPLDVSTGIGSDWQ 940 >gi|294793595|ref|ZP_06758732.1| DNA polymerase I [Veillonella sp. 3_1_44] gi|294455165|gb|EFG23537.1| DNA polymerase I [Veillonella sp. 3_1_44] Length = 877 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 90/590 (15%), Positives = 166/590 (28%), Gaps = 125/590 (21%) Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 R ++A L RF D Sbjct: 404 KTARVHDMSLIAYLLDPTRTN------YGYL--------YLTERFSVPSIANGSVDVECV 449 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + +A E E++ E + E L + + G +D Sbjct: 450 SMVKALLAMNEVACESARRE-ELWSLYE---TIELPLIHTLVVMEKNGIYIDTEKLAETT 505 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 E T++ +E+ L + ++L LF + L + T+ +T VL Sbjct: 506 ARFKEELTQVQEEIYELAG-ETFNINSPKQLGVILFEKLNLPIIKKTKTGYSTDAEVLDM 564 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + +P ++ R ++ L +N T + TGR S Sbjct: 565 LRHESPIVEKILAYR-SVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPN 623 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGI 384 QN+P + E +R+ G LV AD + I Sbjct: 624 LQNIPVRTEKGRE-------------------------IRALFYPGAGYDTLVSADYSQI 658 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA ++G++ +KAF G+D++ T A + +VT ++R+ K + + Y Sbjct: 659 ELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKAINFGIIYGIS 718 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 + L + + + + + M + E G E Sbjct: 719 -----DFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMFGRQRE 773 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 R + R + + T G A K Sbjct: 774 LPDINSRNFNRR-----SFAERTAMNTPIQGTAADIIKL--------------------- 807 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 +N ++L + SR + Sbjct: 808 --------------AMNQVEQKLEEQNF------------TSR----------------L 825 Query: 625 VLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 +L VHDE+V E +++ L M S +PL + + ++ + Sbjct: 826 LLQVHDELVLEVVNSELEAIEELLRSTMQSVVE--LQVPLIVDVHHAENW 873 >gi|282848822|ref|ZP_06258215.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745] gi|282581476|gb|EFB86866.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745] Length = 873 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 90/590 (15%), Positives = 166/590 (28%), Gaps = 125/590 (21%) Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 R ++A L RF D Sbjct: 400 KTARVHDMSLIAYLLDPTRTN------YGYL--------YLTERFSVPSIANGSVDVECV 445 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + +A E E++ E + E L + + G +D Sbjct: 446 SMVKALLAMNEVACESARRE-ELWSLYE---TIELPLIHTLVVMEKNGIYIDTEKLAETT 501 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 E T++ +E+ L + ++L LF + L + T+ +T VL Sbjct: 502 ARFKEELTQVQEEIYELAG-ETFNINSPKQLGVILFEKLNLPIIKKTKTGYSTDAEVLDM 560 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + +P ++ R ++ L +N T + TGR S Sbjct: 561 LRHESPIVEKILAYR-SVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPN 619 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGI 384 QN+P + E +R+ G LV AD + I Sbjct: 620 LQNIPVRTEKGRE-------------------------IRALFYPGAGYDTLVSADYSQI 654 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA ++G++ +KAF G+D++ T A + +VT ++R+ K + + Y Sbjct: 655 ELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKAINFGIIYGIS 714 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 + L + + + + + M + E G E Sbjct: 715 -----DFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMFGRQRE 769 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 R + R + + T G A K Sbjct: 770 LPDINSRNFNRR-----SFAERTAMNTPIQGTAADIIKL--------------------- 803 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 +N ++L + SR + Sbjct: 804 --------------AMNQVEQKLEEQNF------------TSR----------------L 821 Query: 625 VLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 +L VHDE+V E +++ L M S +PL + + ++ + Sbjct: 822 LLQVHDELVLEVVNSELEAIEELLRSTMQSVVE--LQVPLIVDVHHAENW 869 >gi|259047059|ref|ZP_05737460.1| DNA polymerase I [Granulicatella adiacens ATCC 49175] gi|259036109|gb|EEW37364.1| DNA polymerase I [Granulicatella adiacens ATCC 49175] Length = 884 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 94/652 (14%), Positives = 197/652 (30%), Gaps = 122/652 (18%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFNLDIP 89 A F + + V +V K+ L + V F+ VL F D+ Sbjct: 340 IAVAFGNEKNVFVTDLDTAVASEVFKKWLSDASVEKHL----FDTKAAKVLAHRFGFDLK 395 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 ++ +LA +K + + + + E + + KG + D+ Sbjct: 396 GAKY-DVSLLAYLVDTNDIVKEISDVARRVDVTILSSDEAV--YGKGVKIQIPEDKEV-W 451 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTL 207 ++ K + + + + + E EL + + +G VD + Sbjct: 452 NQHLAAKVFTIAKAPEKLLKRLEENEQTHLYWEMELPLSDILARMEIQGIRVDRERLVEM 511 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 + +++QE+ L + ++L LF + GL + T+ +T VL Sbjct: 512 GVEFEERLKEIEQEIYELAG-EEFNINSTKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 570 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 P + R ++ + L + DG++ ++TGR S Sbjct: 571 KLAHQAPIVELILEYRQ-LAKLNSTYVEGLQAYIQEDGKIHTRFIQN-LTQTGRLSSVDP 628 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAG 383 QN+P ++ +R + + K++ +D + Sbjct: 629 NLQNIPIRTKEGRR-------------------------IRYAFLPEHDDWKILSSDYSQ 663 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQ 442 IE RVLA +AG++ ++AF+ D++ T R F ++ P VT + R K + + Y Sbjct: 664 IELRVLAHIAGDKHMIEAFKNNVDIHTNTAMRVFGISNPDDVTSEMRRQAKAVNFGIVYG 723 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + LN++ + EE++ ++F + + E + Sbjct: 724 IS-----DYGLSQNLNISRKRAKEFIDRYLEEFQGVKDFMESIVKEAREKDYVETLFHR- 777 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 R + + + + G A K + L +++ +L Sbjct: 778 -RRYLPDIHSSNFNLRSF---AERTAMNSPIQGSAADILKMAMIELDREMRERKFKANLL 833 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 + Sbjct: 834 ----------------------------------------------------LQVHDELI 841 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 V DE+ + L +M + S +PL+A+ + Sbjct: 842 FEVPQ--DEL---------ESLQSLVEGVMENAVS--LKVPLRADSNVGDNW 880 >gi|197122953|ref|YP_002134904.1| DNA polymerase I [Anaeromyxobacter sp. K] gi|196172802|gb|ACG73775.1| DNA polymerase I [Anaeromyxobacter sp. K] Length = 897 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 103/665 (15%), Positives = 185/665 (27%), Gaps = 134/665 (20%) Query: 30 VILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTV 79 ++ AF H P + + L+ +E + + AH+ Sbjct: 342 LVGLAFA-GAGRAFYLPLGHRYLGAPAPLAPPDVREGLRPLVE-AALPLHAHDLKAAAHA 399 Query: 80 LKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA---LKLSSQKMEEGKELIARF 133 L L T +++R AL V +L + K Sbjct: 400 LAR-LGLA-RSGPGEDTELMSRLLLPTRREHALVDVARERTSCELPRSPADGAKRGAPGL 457 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193 E + +++ E+ L + + Sbjct: 458 EGLEVERVAAWAGACAASLPDLAAKLAEGLEAERLSPLYR------EVERPLVPVLVEME 511 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G VD ++ L+ + + + +L LF+E L + Sbjct: 512 RTGILVDRGAMEGMSAEFGRSMQDLEARIHAAAGHP-FNVASTRELAQVLFVELELPVVK 570 Query: 254 ---LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQ 309 +T Q VL + V +R S+ ++ L + ++ DGR+ T Sbjct: 571 RLKTGPSTDQDVLEKLAEQHALPRLVLEHR-SLSKLKGTYVDALPQLVDPADGRIHTTFH 629 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 GA+ TGR S QN+P + +S +R + Sbjct: 630 QAGAA-TGRLSSSDPNLQNIPVRTE-------------------------LSRRIRQAFV 663 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 A G +L+ AD + IE R+LA + + L+AF ED++ T A +F VAP QVT DQR Sbjct: 664 APAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVAPEQVTPDQR 723 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 I KV+ + Y + L+L + + + W E Sbjct: 724 RIAKVLNFGIAYG-----LSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRRYIEWAVEEA 778 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 G A + + L A E R + Sbjct: 779 RAKGESRTLFGRA---------RAMPEIGAPNPALRNAAE-------------RTAINTP 816 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + + + + V + + R Sbjct: 817 IQGTAADIVKIAMI--------RVHDALAQERRAARL----------------------- 845 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 ++ +VL E P+ + L M +PL+ + Sbjct: 846 ----LLQVHDE---LVL--------EVPERELEPVEALVRREMEGAAR--LKVPLEVQVG 888 Query: 669 ESKRY 673 + + Sbjct: 889 HGQTW 893 >gi|227520124|ref|ZP_03950173.1| possible DNA polymerase I [Enterococcus faecalis TX0104] gi|227072414|gb|EEI10377.1| possible DNA polymerase I [Enterococcus faecalis TX0104] Length = 431 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 76/518 (14%), Positives = 158/518 (30%), Gaps = 111/518 (21%) Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 K D +T + + + E L + + G VD + +++++ Sbjct: 15 KLDSELTEK--NQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEK 72 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278 + + + ++L LF + GL + T+ +T VL K+ P + Sbjct: 73 IYAEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILT 131 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L++ + D ++ ++TGR S QN+P + Sbjct: 132 YRQ-IAKIQSTYVEGLLKVIQPDNKIHTRYVQ-TLTQTGRLSSVDPNLQNIPIRLEEGRK 189 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQW 397 +R + E L+ +D + IE RVLA ++ ++ Sbjct: 190 -------------------------IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEH 224 Query: 398 KLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF G+D++ +T R F V VT + R K + + Y + Sbjct: 225 LKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGIS-----DYGLSQN 279 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L + ++ E++ + + + + + + R ++ Sbjct: 280 LGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR--RRYLSDINSRNFN 337 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + T G A K + R L + Sbjct: 338 LRSF---AERTAINTPIQGSAADILKIAMIE----------------MARRLKEEKL--- 375 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 QA ++L VHDE+V E Sbjct: 376 --------------------------QAT------------------MLLQVHDELVFEV 391 Query: 637 PDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+++ ++ +M S +PL + K + Sbjct: 392 PESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 427 >gi|304437426|ref|ZP_07397385.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369682|gb|EFM23348.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 874 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 91/632 (14%), Positives = 166/632 (26%), Gaps = 149/632 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVGEA 115 + L V + N+ + + + + + + A Sbjct: 373 ILACLAERSVALW--NAK-------RYVQAGLRGTAQIFDLELADYLLHPEESRRDMARA 423 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 F + + L + + + + Sbjct: 424 ----------------AFAFLGDTTSAEGLSPEAYAVHEALLSARLQPIMETELAAQELM 467 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + E L + + G CV+ A L +E+ +L + Sbjct: 468 HLYRTVELPLVPVLAAMEQTGVCVNRAALEHERAAATERIDALAREIHTLAGT-EFNISS 526 Query: 236 LEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF + GL +T L + P +V R ++ Sbjct: 527 PKQLGEILFEQLGLGDGKVKKTKTGYSTNAETLEGLRDQHPIIDKVLTYR-MWTKLRSTY 585 Query: 291 LNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 L+ + + GR+ + + TGR S QN+P + Sbjct: 586 LDGIGALIRPATGRVHTSFNQ-TVTATGRLSSSDPNLQNIPVRTEEGRA----------- 633 Query: 350 ITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 VR+ EG L+ AD + IE R+LA M+G+ + AF G+D+ Sbjct: 634 --------------VRALFTPGEGYDALLSADYSQIELRILAHMSGDATLIDAFRQGQDI 679 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + T A F V VT +QR K + GL+ Sbjct: 680 HARTAAEVFGVPLDAVTPEQRRRAKAVNF--------------GIVYGLSDFGL------ 719 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 A + + +++ V L + Sbjct: 720 ------------------------ARDLGIGRREAGGYIDRYFERYHGVRTF---LDKIV 752 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 NG GR + + + Sbjct: 753 ADAHANGYVTTLY-----------------------GRRRALPALASRNYMQRSF---AE 786 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEF 642 R +Q + D++ M+ A A I+L VHDE+V E + Sbjct: 787 RMAMNTP------IQGTAADLIKIAMVRAYDALQAAGVKSRILLQVHDELVLEVTTEETE 840 Query: 643 NASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 + L M+ A +PL + + K + Sbjct: 841 TVTELLRTAMSGAAELA--VPLAVDVHSGKNW 870 >gi|37626195|gb|AAQ96570.1| putative DNA polymerase [Vibrio phage VP16C] Length = 686 Score = 248 bits (633), Expect = 3e-63, Method: Composition-based stats. Identities = 165/731 (22%), Positives = 257/731 (35%), Gaps = 142/731 (19%) Query: 38 DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT----VLKACFNLD-IPIHR 92 P L + + N I A N FE VL + + + Sbjct: 4 GKGRRAYIP---GGPKPTDLIDHIANGG-PIAAWNITFEFWIWNMVLAKSEGWPWLQLEQ 59 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY---DRNKPN 149 C + AR LP +L +AL+ +++K ++GK+LI + C+ + Sbjct: 60 CYCDMAKARRFSLPGSLDTAAKALR-TAEKDKKGKQLIGKLCRPVSATKARPEPRWTLYT 118 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 + + YC DV + + ++ E+E W DQ IN RG VDV Sbjct: 119 APQDYADLYRYCDQDVKSEDHVSALVPDMTPAERETWLADQRINARGVLVDVESLDNALD 178 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269 IV + EL ++T G V S + KL +L G + +L T L L Sbjct: 179 IVGQTTRRFTMELAAITNGAVGSVSEVAKLTDFL-ATVGCRMHNLKSETVAETLER-DDL 236 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P A ++ R + + V KL +L ++SDGRLR F GA TGRWS QNL Sbjct: 237 NPTARRILEIREALAGANVKKLFSLKAQISSDGRLRNQYNFFGAG-TGRWSAGGVQLQNL 295 Query: 330 PRPSRSHEEL----------------------------------------------DQII 343 + D Sbjct: 296 TSKGPKSKTCNGCGRIVGKSCRVEVMGAAGLCPECGANDWTDNKDWTVDAVRWALKDLKH 355 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +L I DP+ ++S C+R IA+ GKK V D + IEA VLA +A +W+++ F Sbjct: 356 RNLDLIIDIWGDPITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRIEVFR 415 Query: 404 TGEDLYVTTYARSFNVAPAQV----------TKDQRAIGKVMELALGYQGGAKAFQKMAS 453 T +Y + ++ V ++ ++++GKV ELA GY G A++ + Sbjct: 416 THGKIYEMSASKISGVPFEEMMAYKEKNKHDHPLRKSLGKVAELASGYGGWIGAWKAFGA 475 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + ++ WR Sbjct: 476 EEHFEDDDAM----------------------------------------KKAILGWRDA 495 Query: 514 HSRVSELW---NELHQAFEQTIENGK---------AIIARKRRDVPLVYMKKDKNNLILM 561 + E W + + + K V + + L Sbjct: 496 SPEIVEFWGGQYRRDPYTRKWVREYYGLEGAVIMAILNPGKCYAVGDITYAVFDDVLYCR 555 Query: 562 LPSGRSLVYRDVGN-----------NRSYLNTTTR------QLTREYTYGGKLTENIVQA 604 LPSGR L Y +++ T R TYGG+L EN+ QA Sbjct: 556 LPSGRFLQYHQPKLIESDSWKGPEYQVTFMGYNTNSQKGPVGWVRMDTYGGRLAENVTQA 615 Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLK 664 + D+ A M GY +V+ HDE++ E P D + + LMT W + P++ Sbjct: 616 AAADVQAYAMKQCENNGYPVVMHTHDELIAEVP-GDFGSVEEMAALMTGREPWREWWPIR 674 Query: 665 AEGYESKRYRK 675 A G+E RY+K Sbjct: 675 AAGWEDDRYQK 685 >gi|216114|gb|AAA03732.1| DNA polymerase [Bacillus phage SPO1] Length = 924 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 101/763 (13%), Positives = 213/763 (27%), Gaps = 195/763 (25%) Query: 4 LFIDFETRSPID------LTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPV--- 52 + ID ET + K + Y ++ ++ H Sbjct: 209 VVIDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENLMK 268 Query: 53 ------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106 + + L++ LE D+ +AHN F+ L+A ++ + I W T+++ Sbjct: 269 GNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDISIW-DTMLI-HIIDYR 326 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + + L ++ + + + W + Y D Sbjct: 327 GERYSWSKRLAWLET------DMGGYDDALDGEKPKGEDEGNYDLIPWDILKVYLADDCD 380 Query: 167 VTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 VT + ++ P + +Y I G VD L + E Sbjct: 381 VTFRLSEKYIPLVEENEEKKWLWENIMVPGYYTLLDIEMDGIHVDREWLEVLRVSYEKEI 440 Query: 216 TKLDQELESLT---------------------------------------------YGLV 230 ++L+ ++ G Sbjct: 441 SRLEDKMREFPEGVAMEREMRDKWKERVMIGNIKSANRTPEQQDKFKKYKKYDPSKGGDK 500 Query: 231 SSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L LF GL + +T L + + R + Sbjct: 501 INFGSTKQLGELLFERMGLETVIFTDKGAPSTNDDSLKFMGSQSDFVKVLMEFRNG-NHL 559 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 ++ L ++ D + + G + TGR S Q PR Sbjct: 560 YNNFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRK-------------- 604 Query: 347 PTSITSDPDPLQIISDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 + L + ++ + +G +V D + +E R+L + + + + Sbjct: 605 -----VNTPTLFQYNFEIKKMFNSRFGDGGVIVQFDYSQLELRILVCYYSRPYTIDLYRS 659 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 G DL+ + +F VA +V+KDQR K ++ + YQ A+ + G+ Sbjct: 660 GADLHKAVASDAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGI------- 712 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 CE K + ++ +VS+ + Sbjct: 713 --------------------------------TMSEDECEIFIKKYFKRFPKVSKWIRDT 740 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 + + + +G + D+ + + Sbjct: 741 KKHVKD--------------------------ISTVKTLTGATRNLPDIDSIDQ---SKA 771 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPD 638 + R+ +Q D ++ + I +TVHD IV + P Sbjct: 772 NEAERQA------VNTPIQGTGSDCTLMSLILINQWLRESGLRSRICITVHDSIVLDCPK 825 Query: 639 TDE-FNASMLYHLMTSNPSWAK------GLPLKAEGYESKRYR 674 + A + H+M + + + +P+ +E + Y Sbjct: 826 DEVLEVAKKVKHIMENLGEYNEFYKFLGDVPILSEMEIGRNYG 868 >gi|294791734|ref|ZP_06756882.1| DNA polymerase I [Veillonella sp. 6_1_27] gi|294456964|gb|EFG25326.1| DNA polymerase I [Veillonella sp. 6_1_27] Length = 877 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 90/590 (15%), Positives = 166/590 (28%), Gaps = 125/590 (21%) Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 R ++A L RF D Sbjct: 404 KTARVHDMSLIAYLLDPTRTN------YGYL--------YLTERFSVPSIANGSVDVECV 449 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + +A E E++ E + E L + + G +D Sbjct: 450 SMVKALLAMNEVACESARRE-ELWSLYE---TIELPLIHTLVVMEKNGIYIDTEKLAETT 505 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 E T++ +E+ L + ++L LF + L + T+ +T VL Sbjct: 506 ARFKEELTQVQEEIYELAG-ETFNINSPKQLGVILFEKMKLPIIKKTKTGYSTDAEVLDM 564 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + +P ++ R ++ L +N T + TGR S Sbjct: 565 LRHESPIVEKILAYR-SVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPN 623 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGI 384 QN+P + E +R+ G LV AD + I Sbjct: 624 LQNIPVRTEKGRE-------------------------IRALFYPGTGYDTLVSADYSQI 658 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA ++G++ +KAF G+D++ T A + +VT ++R+ K + + Y Sbjct: 659 ELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKAINFGIIYGIS 718 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 + L + + + + + M + E G E Sbjct: 719 -----DFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMFGRQRE 773 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 R + R + + T G A K Sbjct: 774 LPDINSRNFNRR-----SFAERTAMNTPIQGTAADIIKL--------------------- 807 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 +N ++L + SR + Sbjct: 808 --------------AMNQVEQKLEEQNF------------TSR----------------L 825 Query: 625 VLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 +L VHDE+V E +++ L M S +PL + + ++ + Sbjct: 826 LLQVHDELVLEVVNSELEAIEELLRSTMQSVVE--LQVPLIVDVHHAENW 873 >gi|257068663|ref|YP_003154918.1| DNA polymerase I [Brachybacterium faecium DSM 4810] gi|256559481|gb|ACU85328.1| DNA polymerase I [Brachybacterium faecium DSM 4810] Length = 904 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 79/513 (15%), Positives = 154/513 (30%), Gaps = 128/513 (24%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 EQ L + +T+++RG +D L + + + +E ++ V + ++L Sbjct: 498 ELEQPLQRVLETMHERGIAIDEQALAALREEFEGFVAQAKREAGAIVGEEV-NLASPKQL 556 Query: 240 KTWLFLETGLHLEDL---TETTCQRVLSSNKKL-------TPQAIQVFNNRMRASRSAVL 289 + LF L +T L+ ++ + R S+ Sbjct: 557 QVVLFETLALPTTRKISSGHSTDAESLTDLQESLDPESSGHQFLSWLLRFR-EMSKL-TG 614 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 L L + +++ R+ T Q A+ TGR + QN+P + Sbjct: 615 YLVGLDKVVDAGSRVHTTFQQ-TAAATGRLASTEPNLQNIPVRTAEG------------- 660 Query: 350 ITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 +R +A EG L+ AD + IE R++A ++ + ++AF +GEDL Sbjct: 661 ------------QRIRDAFVAGEGFETLLTADYSQIEMRIMAHLSEDAGLIEAFNSGEDL 708 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +R F V+P V R+ K + L Y + L Sbjct: 709 HNFVASRVFGVSPDAVDPAMRSKTKAVSYGLAYG-----LSAFGLSRQL----------- 752 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 ++ + ++ V + + + Sbjct: 753 ----------------------------RISRAEATALRDGYFERFGGVRDYLHHTVETA 784 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 T GR D+ ++ Sbjct: 785 RTT--------------------------GYTETILGRRRYLPDLTSDN---RQRRENAE 815 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEF 642 R + +Q + DI+ M+ + ++L VHDE+V E + Sbjct: 816 RVA------LNSPIQGSAADIIKLAMLRVESRMRAAELSSRMLLQVHDELVVEVAAGELD 869 Query: 643 NASMLYHL-MTSNPSWAKGLPLKAEGYESKRYR 674 + M S + +PL + +R Sbjct: 870 QVREIVEEGMGSA--YQLSVPLDVGVGIGRTWR 900 >gi|282854241|ref|ZP_06263578.1| DNA-directed DNA polymerase [Propionibacterium acnes J139] gi|282583694|gb|EFB89074.1| DNA-directed DNA polymerase [Propionibacterium acnes J139] Length = 910 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 94/668 (14%), Positives = 184/668 (27%), Gaps = 157/668 (23%) Query: 34 AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 A D +D + + L + D H++ L ++ Sbjct: 367 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAER-GWEVAG 425 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + + A K + N Sbjct: 426 LTC-DTELASYLLHPDR------RAHKFDDAVRTHL----------NVALGEVEDNSDQA 468 Query: 151 REAW--RLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYC 198 + F E + V VT + +E E + ++ G Sbjct: 469 MLDFGEDHFAESMERAVAVT-RLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIA 527 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET- 257 D+ + L D T+ ++ + + ++L+ LF + + T++ Sbjct: 528 ADMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRTKSG 586 Query: 258 --TCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 T L+ + P + +R ++ L++ + DGR+ T A Sbjct: 587 YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA 644 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 TGR S QN+P + +R + EG Sbjct: 645 -VTGRLSSKDPNLQNIPMRTEEGRR-------------------------IREGFVVGEG 678 Query: 374 KK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP V+ QR+ Sbjct: 679 YESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKI 738 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K M GL+ Sbjct: 739 KAMNYG--------------LAYGLS------------------------------AYGL 754 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + + + + +V E L + +Q G Sbjct: 755 SNQLKVSVGEAKELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL----------- 800 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 GR D+ + R +Q + D++ Sbjct: 801 ------------GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKL 839 Query: 613 GMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M+ + ++L VHDE++ E +E + + M +PL Sbjct: 840 AMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTV 897 Query: 666 EGYESKRY 673 + + Sbjct: 898 SIGVGRSW 905 >gi|290969141|ref|ZP_06560666.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L] gi|290780647|gb|EFD93250.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L] Length = 857 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 91/658 (13%), Positives = 181/658 (27%), Gaps = 150/658 (22%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 + A D V H P + L +A A + L Sbjct: 334 PQIRDMAVAVD-GQVVHLSAPHIPAYLERLPQA---------AQIITADGKRLYKVLRTG 383 Query: 88 IPIHRW-ICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 + ++ A AL + ++ E Sbjct: 384 KRPAPFPADVVLGAYLLDPTRTSYALSYLATRFEVPL---------------PEGAAPSV 428 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 + W E +T ++++R+E + G+ VD A Sbjct: 429 CAEALFAAQVWEK-EEAALQQFGLT-DLYERIEAPLLYT------LSVMETNGFTVDTAR 480 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260 + + + L+ E+ + ++L LF L + T+ +T Sbjct: 481 LQAMKTALTAQAAALENEIYEAAGAA-FNINSPKQLGHMLFEVLHLPVRKKTKTGYSTDA 539 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRW 319 VL S + P ++ R + L+ L + GR+ + + TGR Sbjct: 540 EVLESLRDAHPAVEKIVRFR-ALKKLISTYLDGLEPLIVPATGRVYTSFHQ-TVTATGRL 597 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVV 378 S QN+P + ++ +RS + +G ++ Sbjct: 598 SSSDPNLQNIPIRTEQGKK-------------------------IRSLFVPGKGYDYILS 632 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 D + IE R+LA ++ + + F+ +D++ T + F++ QVT ++R+ K + Sbjct: 633 GDYSQIELRLLAHLSQDPTMIDGFKKNQDIHRRTASEVFHIPWEQVTPEERSHAKAVNFG 692 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + ++ S + + + E I Sbjct: 693 IIYGIS-----DFGLARNIGISRAQAKQYIESYFARYSTIHGYMEELVRQAKETGITRTM 747 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + R + + K Sbjct: 748 F-----------------------------------------GRMRTLTDINSKNFT--- 763 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 + R +NT + KL N VQ Sbjct: 764 --------RRSLAE----RMAMNTPIQG---SAADIIKLAMNAVQ-----------RELE 797 Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +++ VHDE+V E P + +L M + +PL A+ + K + Sbjct: 798 QRQLRSRLLVQVHDELVLEVPADELELVKTLLKRTMEEAVT--LSVPLIADLHYGKNW 853 >gi|27462176|gb|AAO15360.1| thermostable DNA polymerase [Aquifex pyrophilus] Length = 574 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 108/713 (15%), Positives = 191/713 (26%), Gaps = 203/713 (28%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L++D ET + L G DD + D + L+E + Sbjct: 24 YLYLDTETTG---------------NRIRLVQLG-DDEKTYVIDLYEIHDIT-PLRELIS 66 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAV-GEALKLSS 120 V + HN F+ L I T++ + G +L + G L + Sbjct: 67 EKGV--IGHNLKFDLHYLMNYQ---IEPLATFDTMIASFLLGYERHSLNHLVGNLLGYTL 121 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 K + + +Y DV V RE+F +L + + Sbjct: 122 DKSYQLSDWG-------------------APVLSDAQLKYAAKDVDVLRELFPKLRDMLN 162 Query: 181 K---------------------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 + E + G VD+ + + ++ Sbjct: 163 ELEGERGEELLKTRTARIFGLKSPVAIVEMAFVKEVAKLERNGLPVDIETLESTLKDIER 222 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT 270 + K QE +++ L + L+L + +T +VLSS Sbjct: 223 KTQKKVQEFLIKFRVDPF---SPKQVGQLLTSKYKLNLPRTQKGNVSTDDKVLSSYA--H 277 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 + +++ + + + ++ RL + +GA TGR S QN+P Sbjct: 278 VEPVRLLLEIRKLKKLSDKFKE--IKENLKGDRLYPEFKQIGA-VTGRMSSLKPNVQNVP 334 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 R R+ A EG V+AD + IE R+ A Sbjct: 335 REE-------------------------------RAIFKAPEGNTFVIADFSQIELRIAA 363 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 E+ ++AF G+DL+ T + ++TK++R + K + L Y AK + Sbjct: 364 EYVNEELMIRAFREGKDLHRYTASLVLGKREEEITKEERQLAKAINFGLIYGISAKGLAE 423 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 A T E + + Sbjct: 424 YART--------------------------------------GYGVEISEEEAETFRNRF 445 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + K+K GR Sbjct: 446 FKNFKAFKLWH------------------------EKVKKELKEKGVFRGRTLLGRRF-- 479 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI------ 624 T +Q D+L ++ Sbjct: 480 -------------------TATTFNDAVNYPIQGTGADLLKLAVLLFDAEAKKKKLDAKL 520 Query: 625 VLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAK-GLPLKAEGYESKRYRK 675 V VHDEIV E + M +P++ E ++R+ K Sbjct: 521 VNLVHDEIVVECRKEVANQVKEVLEKAMKQAGKIILKKVPVEVESVINERWIK 573 >gi|220917745|ref|YP_002493049.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1] gi|219955599|gb|ACL65983.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1] Length = 897 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 101/665 (15%), Positives = 182/665 (27%), Gaps = 134/665 (20%) Query: 30 VILFAFGFDDHPVELWDCVHDP----------VMPQVLKEALENTDVTIVAHNSYFERTV 79 ++ AF H + + L+ +E + + AH Sbjct: 342 LVGLAFA-GAGRAFYLPLGHRYLGAPAPLAPADVREGLRPLVE-AALPLHAHELKAAAHA 399 Query: 80 LKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA---LKLSSQKMEEGKELIARF 133 L L T +++R AL V +L + K Sbjct: 400 LAR-LGLA-RSGPGEDTELMSRLLLPTRREHALVDVARERTSCELPRNPADGAKRGAPGL 457 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193 E + +++ E+ L + + Sbjct: 458 EGLEVERVAAWAGACAASLPDLAAKLAEGLEAERLSPLYR------EVERPLVPVLVEME 511 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G VD ++ L+ + + + +L LF+E L + Sbjct: 512 RTGILVDRGAMEGMSAEFGRSMQDLEARIHAAAGHP-FNVASTRELAQVLFVELELPVVK 570 Query: 254 ---LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQ 309 +T Q VL + V +R S+ ++ L + ++ DGR+ T Sbjct: 571 RLKTGPSTDQDVLEKLAEQHALPRLVLEHR-SLSKLKGTYVDALPQLVDPADGRIHTTFH 629 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 GA+ TGR S QN+P + +S +R + Sbjct: 630 QAGAA-TGRLSSSDPNLQNIPVRTE-------------------------LSRRIRQAFV 663 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 A G +L+ AD + IE R+LA + + L+AF ED++ T A +F V P QVT DQR Sbjct: 664 APAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVPPEQVTPDQR 723 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 I KV+ + Y + L+L + + + W E Sbjct: 724 RIAKVLNFGIAYG-----LSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRRYIEWAVEEA 778 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 G A + + L A E R + Sbjct: 779 RAKGESRTLFGRA---------RTMPEIGARNPALRNAAE-------------RTAINTP 816 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + + + + V + + R Sbjct: 817 IQGTAADIVKIAMI--------RVHDALAQERRAARL----------------------- 845 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 ++ +VL E P+ + L M +PL+ + Sbjct: 846 ----LLQVHDE---LVL--------EVPERELAPVEALVRREMEGAAR--LKVPLEVQVG 888 Query: 669 ESKRY 673 + + Sbjct: 889 HGQTW 893 >gi|154508852|ref|ZP_02044494.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC 17982] gi|153798486|gb|EDN80906.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC 17982] Length = 889 Score = 247 bits (630), Expect = 6e-63, Method: Composition-based stats. Identities = 97/667 (14%), Positives = 193/667 (28%), Gaps = 155/667 (23%) Query: 39 DHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97 D+ + D P + L E L T ++++ H++ R L + + T+ Sbjct: 343 DNEALVIDPVELSPQQEEALGEVLA-TALSLIVHDAKGARHALSSR-GWTL-GGVEFDTM 399 Query: 98 VLARSNGL---PSALKA-VGEALKL-------SSQKMEEGKELIARFCKGETHECLYDRN 146 + A L+ + L + S+ + + ++ A + + Sbjct: 400 LAAYLAHPDQRSHKLEDVLSRVLGVVIEEEEGDSEALFDLGDMGAGPSAAQVRAGKLAAH 459 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 R E +T E L L + D G D ++ Sbjct: 460 LHPLASTLRSRLEESSEAALLT-----------DMEMPLSVLLGQMEDIGIAADTSVLDG 508 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVL 263 L+ + + + V + ++L+ LF GL T+T L Sbjct: 509 LSDELGKAVDAAREGAWAAAGREV-NLSSPKQLQELLFDHFGLPKTKKTKTGYTTNAEAL 567 Query: 264 SSNKKL--------TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 + + +R R +++L + SDGR+ T A+ Sbjct: 568 ADLHAKTSDEGGAGHDFLGFLLTHRDRIKLKQ--MVDSLSATVASDGRIHTTFSQ-VAAA 624 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR + QN+P S +R +A EG + Sbjct: 625 TGRLASSDPNLQNIPARSADGMR-------------------------IRGAFVAGEGFE 659 Query: 376 -LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 L+ AD + IE R++A ++G++ ++AF +GEDL+ T + F A+V+ ++R+ K Sbjct: 660 SLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVAEVSAEERSRIKA 719 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 L Y L Sbjct: 720 TSYGLAYG-----LSSYGLAAQLG------------------------------------ 738 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 ++ + ++ +V + L Sbjct: 739 ---IPVPEAAALRDRYFERFGKVRDYLEGLVAQAR------------------------- 770 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 + GR D+ ++ R +Q + DI+ M Sbjct: 771 -ADGYTQTMFGRRRYLPDLRSSN---RQRREMAERAALNAP------IQGSAADIVKIAM 820 Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEG 667 +N A +++ +HDE++ E + + M + +PL Sbjct: 821 INVVDALSEAGLKSRLLVQIHDELLVEVAPGEAAAVEAIVRDKMATPVE--LSVPLDVAV 878 Query: 668 YESKRYR 674 + ++ Sbjct: 879 GVGRSWQ 885 >gi|78358489|ref|YP_389938.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220894|gb|ABB40243.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 931 Score = 247 bits (630), Expect = 6e-63, Method: Composition-based stats. Identities = 104/652 (15%), Positives = 182/652 (27%), Gaps = 143/652 (21%) Query: 32 LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-CFNLD-IP 89 A F+ + + + + ++ + + L + I Sbjct: 411 GIAVAFNGNE--YLYTGKPEDLAAHMAQ---TGAISRI---IAPDVKALYRSHTSWRAIE 462 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 +HRW + A ++ L Sbjct: 463 VHRWFDLGLAAYLLNP--------------EERDYSWTSLAR-----------RAEEFGI 497 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 + D E + E L + + RG ++ A Sbjct: 498 DAQTPATLALTLAQDAAARLEGVGLSALMEELEMPLIPVLADMELRGIRINRAEFSGFLA 557 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSS 265 V E +L QE+ ++ G + R ++L LF GL T+ +T Q VL Sbjct: 558 EVQKELDRLTQEVYAVAGGQ-FNIRSSQQLGELLFGTLGLKAGSKTKGGQASTSQAVLEK 616 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 P + R + + L L + R+ T L A+ TGR S Sbjct: 617 LAGKHPVIDTILEYR-KLEKLRSTYLEPLPRLAQENDRIHTTFNQL-ATATGRLSSSQPN 674 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P + +R C A+ G KLV AD + IE Sbjct: 675 LQNIPVRGP-------------------------MGQRMRRCFTAAPGNKLVAADYSQIE 709 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RVLA ++ + +++F ED++ T ++V A VT DQR K + L Y G Sbjct: 710 LRVLAHVSADPTLIESFTRNEDIHSRTAGLLYDVTAADVTPDQRRNAKTINFGLIYGMGP 769 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + + L + + + F ++++ EH G Sbjct: 770 QKLAQE-----LKVTLNEAKEFIERYFSKLSHLKEFYDNVEQSAREHGFVTTLAGR---- 820 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 R+ + N+L + Sbjct: 821 -----RRLLPEIHSDNNQLRSQARR----------------------------------- 840 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 + + + + + E + Q + IL Sbjct: 841 --------QAINTVVQGSAADIIKIAMLKAAADETLQQLNAALIL--------------- 877 Query: 626 LTVHDEIVCETPDT-DEFNASMLYHLMTSNPSW--AKGLPLKAEGYESKRYR 674 VHDE++ E P E A L +M+S A +PL + + Sbjct: 878 -QVHDELLLEAPQDAAEAAAKRLADIMSSVRPGGAALDVPLAVDYGIGDNWG 928 >gi|282856785|ref|ZP_06266046.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455] gi|282585408|gb|EFB90715.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455] Length = 866 Score = 247 bits (630), Expect = 6e-63, Method: Composition-based stats. Identities = 86/501 (17%), Positives = 147/501 (29%), Gaps = 121/501 (24%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 ++ + L + RG +D L++ ++ + + +++ + + + Sbjct: 465 MNEIDLPLIPSLIGMERRGIRLDREKMLALSRELERQLNAITEKVYEAAGCEI-NLNSPK 523 Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTP---QAIQVFNNRMRASRSAVLKL 291 ++ LF + GL + T+ +T VL +++ + + A + Sbjct: 524 QIGELLFEKLGLPVVKKTKTGYSTDVSVLEQLREICGARCEIPGQLLEYRELQKMASGFV 583 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L+ A DG + T + L + TGR S QNLP Sbjct: 584 QPLLSAAGGDGLIHSTFESLT-TGTGRLSSRDPNMQNLP--------------------- 621 Query: 352 SDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R C+I S G AD + IE RVLA ++G+ ++ F + D++ Sbjct: 622 ----TYSGWGQRIRECLIPSQPGHCFAAADYSQIELRVLAHLSGDPQLIEIFNSDRDIHT 677 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T A F + VTK+ R K + L Y + L + Sbjct: 678 ETAAMIFGLPADAVTKELRRSAKTVSFGLIYGMSV-----FGLASRLGTD---------- 722 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 ++ A+ V E Sbjct: 723 -----------------------------RNTAFQIMDAYFAALPGVREYME-------- 745 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 KK GR ++ + N T R Sbjct: 746 ------------------TSKKKSLEFGYTSTLFGRRRPMDEI----ATGNQTKDHQKRV 783 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDIVLTVHDEIVCETPDTDEFNAS- 645 +Q + DI M +VL VHD IVCE P + Sbjct: 784 AINAP------IQGTAADITKIAMNKVAAHFAGRDVAMVLQVHDSIVCECPHDQAEQTAL 837 Query: 646 MLYHLMTSNPSWAKGLPLKAE 666 L +M S +PLK E Sbjct: 838 ELSQVMESAVH--LSVPLKTE 856 >gi|314980950|gb|EFT25044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3] gi|315091681|gb|EFT63657.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4] Length = 892 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 94/668 (14%), Positives = 184/668 (27%), Gaps = 157/668 (23%) Query: 34 AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 A D +D + + L + D H++ L ++ Sbjct: 349 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAER-GWEVAG 407 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T + + A K + N Sbjct: 408 LTC-DTELASYLLHPDR------RAHKFDDAVRTHL----------NVALGEVEDNSDQA 450 Query: 151 REAW--RLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYC 198 + F E + V VT + +E E + ++ G Sbjct: 451 MLDFGEDHFAESMERAVAVT-RLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIA 509 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET- 257 D+ + L D T+ ++ + + ++L+ LF + + T++ Sbjct: 510 ADMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRTKSG 568 Query: 258 --TCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 T L+ + P + +R ++ L++ + DGR+ T A Sbjct: 569 YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA 626 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 TGR S QN+P + +R + EG Sbjct: 627 -VTGRLSSKDPNLQNIPMRTEEGRR-------------------------IREGFVVGEG 660 Query: 374 KK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP V+ QR+ Sbjct: 661 YESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKI 720 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K M GL+ Sbjct: 721 KAMNYG--------------LAYGLS------------------------------AYGL 736 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + + + + +V E L + +Q G Sbjct: 737 SNQLKVSVGEAKELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL----------- 782 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 GR D+ + R +Q + D++ Sbjct: 783 ------------GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKL 821 Query: 613 GMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M+ + ++L VHDE++ E +E + + M +PL Sbjct: 822 AMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTV 879 Query: 666 EGYESKRY 673 + + Sbjct: 880 SIGVGRSW 887 >gi|328868272|gb|EGG16650.1| mitochondrial DNA polymerase A [Dictyostelium fasciculatum] Length = 1855 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 104/779 (13%), Positives = 194/779 (24%), Gaps = 179/779 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELWDC--VHDPVMPQV 56 D E ID+ + +I F+ F D + + Q+ Sbjct: 1142 ACDTE-VIDIDVKEQSP---IGHGKIICFSIYCGPDIDFGTGSRIWVDILGSNGDEILQI 1197 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP------SALK 110 KE E+ + V HN F+R V N+D+ + T+++AR +L+ Sbjct: 1198 FKEYFEDESIFKVWHNYAFDRHVFYNH-NIDV-VGFGGDTMLMARLWDASRMMRGGYSLE 1255 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE-----AWRLFGEYCKGDV 165 + + L L K K + P + EY D Sbjct: 1256 GLTKDL-LDKHKTNMDDLFGQPKLKSDGTPGKGIILPPLEHLQRSSKHLTKWIEYSSRDA 1314 Query: 166 TVTREIFKRLEPLS-----------------SKEQELWYLDQTINDRGYCVDVALAHTLN 208 VT + + L + L + RG VD+ + Sbjct: 1315 EVTWMLRENLHKKLMTMEWIGPNSNMWDFYYMMWRPFGQLLTDMERRGMKVDLEHLKGVE 1374 Query: 209 QIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLFLE----------------- 246 I + T+ ++ + +++ +LF Sbjct: 1375 VIAQRDITEHNENFRRWALGYCENVKHMNIDSDAQVQQFLFAPCRNVKTKEEMAREEEFE 1434 Query: 247 -------------------------TGLHLE----DLTETTCQRVLSSNKKLTPQAIQVF 277 GL + + L P + Sbjct: 1435 RENVDGIIEEGAKKAKKKIGFKLAGLGLPVPGVTNSGWPSVDAASLRLLSGKDPANGKYG 1494 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-----------SRTGRWSGCVFPP 326 + ++ L + + + A S S + P Sbjct: 1495 TAYNHFA------VDRLPPNATEEEIEKAKEEGRQACLAIASLLEVGSIGTLISSFIIPL 1548 Query: 327 QNLPR-----PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 Q L + + + + L+ +R G LVVAD Sbjct: 1549 QRLADSNHRLHTSVNVNTETGRLSSRRPNLQNQPALEKDRYKIRKAFTCEPGNTLVVADY 1608 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +E R+L + + L AF G D + T RA E+ L + Sbjct: 1609 GQLELRLLGHITNCKSMLDAFRVGGDFHSRTAMGM--------YPHVRAAVDAGEVLLEW 1660 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 G L ++ NF + + + + Sbjct: 1661 D-------------GEGAPPKPLLKDKFASERRKAKTLNFSIAYGKTAHGLSKDWNVTLS 1707 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 + W + V Q Q Sbjct: 1708 EAQNTLNRWYEDRPEVLLWQRSTIQIAHQ--------------------------KKWTR 1741 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------ 615 GR + D+ + R Q + DI+ + M+ Sbjct: 1742 TLMGRYRLLPDIDSK---ARGFVGHSERASINTPL------QGGAADIVMKAMLIIEQDA 1792 Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + GY +++ +HDE++ E P+ A + LM + + + L + +K + Sbjct: 1793 RLKELGYRLIMQIHDELILEGPEEHAPEARDIVIKLMGNPLNKPLLVDLVVDCRFAKTW 1851 >gi|289644114|ref|ZP_06476209.1| DNA polymerase I [Frankia symbiont of Datisca glomerata] gi|289506083|gb|EFD27087.1| DNA polymerase I [Frankia symbiont of Datisca glomerata] Length = 932 Score = 246 bits (628), Expect = 9e-63, Method: Composition-based stats. Identities = 88/598 (14%), Positives = 171/598 (28%), Gaps = 138/598 (23%) Query: 95 CTLVLARSNGLPSA---LKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 T + A L + L + E G+ I + R + Sbjct: 449 DTALAAYLALPGQRTFDLADLVLRYLRRDLRPETSETGQLTIDGSDEAAAAAADVVRARA 508 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 A L + + T E L + + G D L Sbjct: 509 TLELADALDADLARRGATALLR---------DVELPLVTVLAGMERAGIAADTDHLLDLQ 559 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSS 265 + + T++ + + + + ++L+ LF E GL +T T L+ Sbjct: 560 KHYGAQVTEVAAQAQEIVGRP-FNLSSPKQLQVILFDELGLPKTKKIKTGYTTDADALAW 618 Query: 266 NK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 P + +R +R +++L+ ++ GR+ T + A+ TGR S Sbjct: 619 LSTQADHPLLAVLLRHR-DVARLR-TVVDSLIPMIDDAGRVHTTFNQMIAA-TGRLSSAD 675 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLA 382 QN+P + +R + G + L+ AD + Sbjct: 676 PNLQNIPVRTAEGR-------------------------QIRRAFVVGAGYESLLTADYS 710 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++G++ + AF +GEDL+ A++F + +V + R K M Sbjct: 711 QIEMRIMAHLSGDKGLIGAFASGEDLHTFVAAQAFGIPVDEVDPELRRRIKAMSYG---- 766 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 GL+ A Sbjct: 767 ----------LAYGLSAFGLAGQ------------------------------LGIHPEE 786 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 +A+ + V + + + + Sbjct: 787 AREQMEAYFARFGGVRDFLRGVVERAR--------------------------ADGYTET 820 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--- 619 GR D+ ++ + R +Q + DI+ M+ + Sbjct: 821 ILGRRRYLPDLTSDNTQRRQM---AERMALNAP------IQGSAADIIKIAMLGVDRKLR 871 Query: 620 ---AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 A ++L VHDE+V E + + L M + +PL+ + + Sbjct: 872 EHGARSRLLLQVHDELVLEIAPGERADVEALVRTEMGGA--YQMSVPLEVSVGSGRTW 927 >gi|88608724|ref|YP_506553.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama] gi|88600893|gb|ABD46361.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama] Length = 829 Score = 246 bits (628), Expect = 9e-63, Method: Composition-based stats. Identities = 81/638 (12%), Positives = 175/638 (27%), Gaps = 185/638 (28%) Query: 57 LKEALENTDVTIVAH--NS--------YF-ERTVLKACFN-LDIPIHRWICTLVLARSNG 104 L++ + + + H N F + V+ N L+ + + G Sbjct: 333 LQDLFTDRSIKKIFHSDNIPHPDPTNDSFEDLKVIAYPLNTLNTDLEYLF-----SHYLG 387 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 + +A + L +K+ Sbjct: 388 ET-SREAFHKRLNELYEKLC------------------------------------NAMF 410 Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 ++ +++ + G +DV +L+ + + +++ ++ Sbjct: 411 TEKVLTLYYKVDKPLINAIKHM------EKNGISLDVEQLLSLSTQISGKLEEIESKIFD 464 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + S + ++L LF E + ++ ++ T VL+S + + Sbjct: 465 IAG-KTFSLQSPKQLGKVLFEEMQIPVQKKLKSGLSSTDNEVLTSLSIQGYEIADYLLSW 523 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLR--GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + ++ L+ +N + T + TGR S QN+PR Sbjct: 524 RHYIKLKTAYIDPLLLKVNPNEEKHRISTTYSATLTLTGRLSSSNPNLQNIPR------- 576 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +R A EG + AD + IE R+LA++A + Sbjct: 577 ----------------------EKEIRKIFTAKEGHHFLCADYSQIELRILAYIANVERL 614 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 A +G DL+ T ++ F ++T D R K + + Y + L Sbjct: 615 KCALASGTDLHTLTASQIFKT--DKITPDLRNKAKAVNFGIVYG-----ITNFGLSKQLA 667 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + + ++ + Sbjct: 668 I---------------------------------------SKEEAASYIQKYFDEYPEIK 688 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 N + + + + R +++ +N Sbjct: 689 IYMNHIRNQARK--------------------------DTYVKTMMNRKCPIQNINSNN- 721 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG---YDIVLTVHDEIVCE 635 T + R +Q + DI+ M+ + +V+ VHDE+V E Sbjct: 722 --RTISLVAERSAINAP------IQGTAADIIRTAMVRMAQEKELLSHMVMQVHDELVFE 773 Query: 636 TPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKR 672 A + +M + G+PL E Sbjct: 774 LETDVIQQLAKKIKRIMEE----SHGIPLLVELKHGPN 807 >gi|326773414|ref|ZP_08232697.1| DNA polymerase I [Actinomyces viscosus C505] gi|326636644|gb|EGE37547.1| DNA polymerase I [Actinomyces viscosus C505] Length = 946 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 102/691 (14%), Positives = 188/691 (27%), Gaps = 163/691 (23%) Query: 21 ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKEALENTDVTIVAHNSYFER 77 + D ++ + D D ++P+ L L + + + ++ Sbjct: 378 LKPVEGDAALVSLS---DGSRAVAIDLT--EILPEDETVLARLLADVERPKLVADAKGSW 432 Query: 78 TVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEA-LKLSSQKMEE-------- 125 L L + + ++ + + L + + E Sbjct: 433 HALS-ARGLTLD-GVIADPSLAGYLCRPEQRSYDVETLTQRWLGIDLAAVNEGSAGGDGG 490 Query: 126 ---------GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + L ++ +H R L + D Sbjct: 491 SGESQSAFDLEALTSQEAVPPSHLASARRAAALLPLQAVLDEQMAARDAAGLF------- 543 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + E + + D G VD A+ H +D E G + Sbjct: 544 --TDLEMPVAATLTVMEDAGIAVDDAVLHARQTELDARV-THAAEGAYAAAGRELNLSSP 600 Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKL 291 ++L+ LF E + T+T T L+ P + +R + Sbjct: 601 KQLQAVLFDELKMPKTRKTKTGYTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQT--V 658 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L +A+ +DGR+ T Q A+ TGR S QN+P Sbjct: 659 EGLRKAIQADGRIHTTFQQTIAA-TGRLSSTDPNLQNIPARHEEGMR------------- 704 Query: 352 SDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R EG + L+ AD + IE R++A ++ +Q ++AF +GEDL+ Sbjct: 705 ------------IREAFTVGEGYECLMTADYSQIEMRIMAHLSADQALIEAFRSGEDLHR 752 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 A + VT QR+ K M L Y Sbjct: 753 YVAALVHGIEVEDVTAQQRSHVKAMSYGLAYG-----LSTFGLARQ-------------- 793 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 ++ A+ + +V + L EQ Sbjct: 794 -------------------------LGIDNAEAADLRNAYFARFGKVHDY---LESVVEQ 825 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 +G GR D+ ++ R Sbjct: 826 ARRDGYTETM-----------------------FGRRRYLPDLTSDN---RQRREMAERA 859 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ + M++ A I+L +HDE++ E + Sbjct: 860 ALNAP------IQGSAADIVKKAMIDVDSALREQALTSRILLQIHDELLIEVAPGEAEAV 913 Query: 645 S-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 +L M +PL + +R Sbjct: 914 ENLLKEQMGGAAE--LSVPLDVAVGRGRTWR 942 >gi|269123864|ref|YP_003306441.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112] gi|268315190|gb|ACZ01564.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112] Length = 861 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 81/600 (13%), Positives = 179/600 (29%), Gaps = 120/600 (20%) Query: 81 KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 K NL I + L+ + + G + K A +EE + I + Sbjct: 371 KEWKNLGINFKNYFDILLASFTLGTDKSQKLETMAFDKLGLSIEEIDKKILNKFDATSFI 430 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 A E + ++ LE +E + + +G ++ Sbjct: 431 EYRKNRLITMTYAIFKLKEVFMDLLEKENQLDIYLEE-----KEFTDVLIYMEKQGIAIN 485 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257 N ++ + ++ ++ + + ++L LF G+ + + Sbjct: 486 QNYFEKYNLELEKKIKDIENKIYIESG-ESFNISSPKQLGEVLFETMGIEGVKKNKRGYS 544 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL + + ++ + + L++ + +GR+ T G + TG Sbjct: 545 TDAEVLELLRDRGIKIAELLLEYRELVKLKSTYVEPLLKL-SINGRIHTTYNQTG-TATG 602 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P + + +R IAS+G KLV Sbjct: 603 RLSSSNPNLQNIPTRTYEGTK-------------------------IREGFIASKGMKLV 637 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 D + IE RVLA ++ ++ + A++ DL+ T + F + + Sbjct: 638 SFDYSQIELRVLAEISKDENLINAYKHNLDLHELTARKIFMLKDDE-------------- 683 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 K + NF + + E Sbjct: 684 -----------------------------KVSKTQRNIAKVINFSVLYGKTPFGLSKELK 714 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + + +++ +V L +++ + ++ + Sbjct: 715 ITVSDAKLYINTYFKEYPKVRILLDDIIEKAKK--------------------------D 748 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 + G D+ ++ Q R ++Q + +I+ + M Sbjct: 749 GYVETKFGTRRYVYDINSSNI---NIKEQAKRMA------VNTVIQGTAANIIKKVMKEI 799 Query: 618 TKAGY----DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + + +M + + + LK G E + Sbjct: 800 YDKLCNDNVKMLLQVHDELIFEVRED-INIFEEIRDIMQNTIVF-DDVVLKVNGSEGDNW 857 >gi|297518776|ref|ZP_06937162.1| DNA polymerase I [Escherichia coli OP50] Length = 665 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 48/339 (14%), Positives = 105/339 (30%), Gaps = 55/339 (16%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S +++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111 ++LK LE+ V N ++R +L +++ T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + E ++ A G Y D VT ++ Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508 Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ P K L + I G +D + H ++ + + +L++ Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQV 276 + + + ++L+T LF + G+ T +T + VL P + Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGAS 314 R ++ + L +N GR+ + + Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTA 665 >gi|226950437|ref|YP_002805528.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto] gi|226844476|gb|ACO87142.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto] Length = 875 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 102/674 (15%), Positives = 204/674 (30%), Gaps = 141/674 (20%) Query: 17 TKCGICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENT 64 + + Y E ++LF+ + V D +V +E E+ Sbjct: 322 KENDLYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCREMFESK 381 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 ++ + +N+ RT+L+ +D + + A V + ++SS E Sbjct: 382 EIKKITYNAKNPRTILRK-LGIDFNGIK-FDINLAAYLIDP------VRKEYEISSLASE 433 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 + I R + + + E D + ++ EQ Sbjct: 434 YLFKNINREDEFLKIKEVNI------MPNLYKVLEEKIKDQDMEELLY-------KVEQP 480 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + G+ VD + L + E E+ S++ + ++L LF Sbjct: 481 LTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE-EKFNINSPKQLGKILF 539 Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + L + T+ +T VL + P ++ R ++ + L A++ D Sbjct: 540 EKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQ-LTKIYSTYIEGLKAAIDED 598 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 G++ + TGR S QN+P E Sbjct: 599 GKIHSNFNQ-TVTATGRLSSTEPNLQNIPIKYEMGRE----------------------- 634 Query: 362 DCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R I + G ++ AD + IE RVLA ++ ++ + AF +D++ T + F V Sbjct: 635 --IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVP 692 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 +VT R+ K + + Y G + + LN+ ++ E + + + Sbjct: 693 IEEVTPLMRSNAKAVNFGIVYGIGDFSLSQ-----DLNITRKEAKQYIDAYLERYPNVKL 747 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + + E E + R K + + V + + G A Sbjct: 748 YLENIVEEAVEKGYVSTILNR--RRYIKEVKSSNKIVKA---AGERLAMNSPIQGSAADI 802 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 K V + R L + ++ Sbjct: 803 IKLAMVNVH----------------RKLKEDNFKSS------------------------ 822 Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVH-DEIVCETPDTDEFNASMLYHLMTSNPSWAK 659 I+ + ++L VH DE+ E +++ M Sbjct: 823 --------II----LQVHDE---LILNVHKDEL--------ERIKALVKKEMEQVLELKV 859 Query: 660 GLPLKAEGYESKRY 673 G L + + Sbjct: 860 G--LDVDINIGNNW 871 >gi|257452007|ref|ZP_05617306.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] gi|317058556|ref|ZP_07923041.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] gi|313684232|gb|EFS21067.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] Length = 882 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 82/664 (12%), Positives = 186/664 (28%), Gaps = 154/664 (23%) Query: 36 GFDDHPVELWDCVHDPVMPQVLKEALEN----TDVTIVAHNSY-----FERTVLKACFNL 86 + H LE+ + + + ++ L Sbjct: 343 CTSSNKSIYIPLFHIG--------LLESNIDLEECQKLFFSLKGKLYTYDLKELLK-LGF 393 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 +++A G+ + + E + Sbjct: 394 SFQ-KPVYD-MMIAYHLVSSQT----------KEDYTSIGQYYLKTIAEDEKIVFAKQKI 441 Query: 147 KPNHREAWRLF------GEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYC 198 + +++ F Y D + +++ ++ E L + ++ +G Sbjct: 442 ETLSIDSYGNFLLKRSQILYSCLDS-LEKDLKEKELENVLWETELPLIPVLASMEKQGIK 500 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256 +D + ++ + L++E+ + ++L LFL+ L T+ Sbjct: 501 IDRKYFQKYSLELNEKLVLLEKEIWKEAG-EEFNINSPKQLGEILFLKLNLPTGKKTKTG 559 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + Q + ++ ++ + + + R+ +G + Sbjct: 560 FSTDVEVLENLSSQGFQIATNLLEYRKLAKLKNTYVDPIPKMVKFGDRIHTCYHQIG-TV 618 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P + +R IA +G K Sbjct: 619 TGRLSSSDPNLQNIPVKTEEGIR-------------------------IRQGFIARDGWK 653 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ D + +E RVLA ++ ++ +KA++ +DL+ T + F Sbjct: 654 LLSIDYSQVELRVLAALSKDENLVKAYQEKQDLHSVTAKKIF------------------ 695 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + + NF + A E Sbjct: 696 -------------------------ELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKE 730 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 K + +++ RV++ E+ + EQ Sbjct: 731 LGISVKDAAEYIKRYFEQYPRVAQFETEIIEFAEQ------------------------- 765 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + + GR + + + + Q R +VQ + +IL + M+ Sbjct: 766 -HGYVETYFGRKRIIDGIHSKNRMVKN---QAERMA------VNTVVQGTAAEILKKVMI 815 Query: 616 NAT-----KAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYE 669 K ++L VHDE++ E + L + M + + + L+ Sbjct: 816 KIYSWLLGKTDIYLLLQVHDELIFEIQEERVEEYVKTLTNFMKNTIQL-EEVELEVNTNI 874 Query: 670 SKRY 673 + Sbjct: 875 GNTW 878 >gi|124808322|ref|XP_001348285.1| Pfprex [Plasmodium falciparum 3D7] gi|23497176|gb|AAN36724.1| Pfprex [Plasmodium falciparum 3D7] Length = 2016 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 88/692 (12%), Positives = 182/692 (26%), Gaps = 160/692 (23%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLK 58 + +D ET G+ + E+ + L +++PV ++D + + L+ Sbjct: 1464 IKYCGLDIETT--------GLEVFDEN--IRLIQIAVENYPVIIYDMFNINKKDILDGLR 1513 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 + LEN ++ + N F+ L + I T + ++ + Sbjct: 1514 KVLENKNIIKIIQNGKFDAKFLLHN---NFKIENIFDTYIASKLLDKNKNM------YGF 1564 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV---------TVTR 169 + E + + +LF Y D Sbjct: 1565 KLNNIVE-----KYLNVILDKQQQNSVWNNSLLNNNQLF--YAARDSSCLLKLYKKLKEE 1617 Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + L ++ E + + G VD+ + E L+ Sbjct: 1618 IKKENLHIVNDIENKCILPICDMELNGIKVDLENLQKSTNEILNELNIEKDNLKKKLKDE 1677 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + +++ L + + N + I + N R + Sbjct: 1678 NINVNSQQQVLKALQKNNVRDISNKLIENTSDSNLKNFLNHEEIISLRNYRR-LYKLYSA 1736 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 L +N+ T + +GR+S Q +PR Sbjct: 1737 FYLKLPLHINTKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPR------------------ 1778 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R I ++ ++AD IE ++ A + ++ LKA+ DL+ Sbjct: 1779 -----------QKNIREIFIPNDNNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLH 1827 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + + K+ R I K + L Y + A+T Sbjct: 1828 TLTASIITKKNIPDINKEDRHIAKAINFGLIYGMNYVNLKNYANTY-------------- 1873 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 C ++ + + + + + Sbjct: 1874 ------------------------YGLNMSLDQCLYFYNSFFEHYKGIYKWH----NQVK 1905 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 Q + ++ ++ P Sbjct: 1906 QKRALQYSTLSNRKVIFPYFSFT------------------------------------- 1928 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDT-DEFNA 644 K VQ DIL +++ I+L VHDEI+ E E Sbjct: 1929 ------KALNYPVQGTCADILKLALVDLYDNLKDINGKIILCVHDEIIIEVNKKFQEEAL 1982 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYE--SKRYR 674 +L M ++ S+ +K E ++ + Sbjct: 1983 KILVQSMENSASYFLK-KVKCEVSVKIAENWG 2013 >gi|83311029|ref|YP_421293.1| hypothetical protein amb1930 [Magnetospirillum magneticum AMB-1] gi|82945870|dbj|BAE50734.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 516 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 126/454 (27%), Positives = 188/454 (41%), Gaps = 80/454 (17%) Query: 258 TCQRVLSSNKKLTP-QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 T V A Q R A++++ KL +V+ DGR RG GA T Sbjct: 107 TKAAVRQMLAGDIEGAARQAVEIRAEAAKASTAKLTAMVKCACDDGRARGLHLVYGAG-T 165 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQII---THLPTSITSDPDPLQIISDCVRSCVIASEG 373 GRW+G + QNLPR S +L + + PL +IS +R C+I +EG Sbjct: 166 GRWAGRLIQLQNLPRGSVKKADLAIPLIIDGDIDLVSMLFGPPLDVISSNLRGCLIPAEG 225 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS------------FNVAP 421 + +D + IE R+ AW+A E+WK++AF + + Sbjct: 226 CDFIQSDFSNIEGRITAWLANEEWKIQAFRDFDAGTGRDLYLIGAEKILTLLKVPYAHPL 285 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 + ++++ GKV ELALG+ GG AFQ MA+ G+ Sbjct: 286 NENSQERTPYGKVPELALGFGGGVGAFQSMAAIYGM------------------------ 321 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 +++K AWR+ H RV LW + A I N +++ Sbjct: 322 ---------------KVTDEEADQIKVAWREAHPRVVALWRNMEDAAFNAISNPGRVVST 366 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSY------------------LN 581 + V L ++LPSGR L Y + R +N Sbjct: 367 AGGRIKYV---VKGGFLWMVLPSGRPLAYAHPRIEKRRPAWNIGQDEIKLKDTITFMSVN 423 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 + TR+ R TYGG L EN +QA++RD+LA ++ AGY +V+ VHDE + E Sbjct: 424 SITRKWERCTTYGGSLAENAIQAIARDLLANALLKLEAAGYPVVIHVHDEALAEIRKG-V 482 Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + +M P+WA GLP+ A G+ RYRK Sbjct: 483 GSVDEFKSIMCDTPAWAAGLPVAAAGWRGSRYRK 516 >gi|163782924|ref|ZP_02177919.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] gi|159881604|gb|EDP75113.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] Length = 576 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 115/717 (16%), Positives = 209/717 (29%), Gaps = 209/717 (29%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 LFID ET + LF G D+ + + D P VLKE + Sbjct: 24 YLFIDTETTGD---------------RIRLFQVG-DEERIFVIDLFDLPEAVDVLKELIA 67 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSS 120 V V HN F+ + + L I + T++ + G +L V E L + Sbjct: 68 KKGV--VGHNLKFDLKFM---YPLGIVPYATFDTMIGSFLLGYERHSLSHVAERLLGYTM 122 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 K + + + EY DV V RE+F ++ + Sbjct: 123 DKSLQLSDWSRTALT-------------------KQQIEYAATDVLVVRELFYKMREKLN 163 Query: 181 ----------------------------KEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 E + G VD L++ + Sbjct: 164 ALGETDRGEELLRTRTARVFGLTNPATVVEMAFVQEIARLEMNGIPVDEEEIERLSREYE 223 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKL 269 + + + +++ ++L GL L + + +T + L+ + Sbjct: 224 KKLQ---KLIMDFYIKYRIDPMSPKQIGSFLTGRLGLELPETQKGNISTDDKTLAEFSHV 280 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 + + R + A+ KL L + +GR+ + +GA TGR S QN+ Sbjct: 281 -KEVRDILEIRRI--KKALDKLKELKGFIR-NGRVYPEFRQIGA-VTGRMSSSNPNVQNI 335 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 PR +RS ASEG V+AD + IE R+ Sbjct: 336 PRD-------------------------------MRSLFRASEGNLFVIADFSQIELRIA 364 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++ L+AF G DL+ T + ++TK++R + K M Sbjct: 365 AEYVQDENMLRAFREGRDLHRYTASLVLEKPEEEITKEERQLAKAMNF------------ 412 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 G++ + + + A + ++ Sbjct: 413 --GLIYGISARGLS------------------------EYARSSYGVELEIEAADVFRQK 446 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + + + + + + ++ E + + Sbjct: 447 FFKFFHAFKDWHDSVKRELKENKEVVGTTLLGRPY------------------------- 481 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG--MMNATKAG----YD 623 R T+ +Q D+L M + Sbjct: 482 -------------------RASTFT-DAVNYPIQGTGADLLKLAVLMFDVETRKKGLSAR 521 Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRYRK 675 +V VHDEIV E P + A + + A +P++ E +R+ K Sbjct: 522 VVNLVHDEIVVECP---QELAEQIKESLEHAMVHAGSIVLKHVPVEVESVVDERWVK 575 >gi|332981757|ref|YP_004463198.1| DNA polymerase I [Mahella australiensis 50-1 BON] gi|332699435|gb|AEE96376.1| DNA polymerase I [Mahella australiensis 50-1 BON] Length = 850 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 82/649 (12%), Positives = 178/649 (27%), Gaps = 144/649 (22%) Query: 35 FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRW 93 + +++++ +P ++ L N V +++ R ++ ++++ Sbjct: 332 LSLSEDELKVYNISVKQSVPDIVAAVLSNPKVHKHVYDAK--RLIVSMNKSHINVKGID- 388 Query: 94 ICTLVLARSNGLPSALKA----VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 ++ A + V + L++ L + N Sbjct: 389 FDAMIAAYLLDPSQSNYDIKRLVKQYLEIDDDAASHAGYLWRLMNIMLPQIKENEMNALF 448 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 + L + + G+ VDV + L Sbjct: 449 YDIE-----------------------------MPLTRVLADMEINGFTVDVQMLKELAD 479 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266 + L +E+ +L + ++L LF + L + T+ +T VL Sbjct: 480 DFERMIDGLTKEIYALAG-EEFNINSPKQLGAILFEKLKLPVGKKTKTGYSTDIEVLKQL 538 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + ++ + R ++ ++ L+ + + + TGR S Sbjct: 539 QLQHDIVPKIIDYRQ-LTKLKSTYIDGLMNMADPITHKIHSKFNQTVTVTGRISSTEPNL 597 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIE 385 QN+P + + +R + S L+ AD + IE Sbjct: 598 QNIPVKTE-------------------------LGHQIRKAFVPSSSDYLLLDADYSQIE 632 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RVLA M+ +Q + AF G+D++ T + F + QVT R+ K + + Y Sbjct: 633 LRVLAHMSQDQNMIDAFLKGQDIHARTASEVFGIPLEQVTPLMRSRAKAVNFGIVYGIS- 691 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + ++ + F + +H R Sbjct: 692 ----DFGLARNIGISRSEAKQYIEQYFARYNGVRRFMDETIQFAKKHGYVTTMFKR--RR 745 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + V +A T G A K+ V + Sbjct: 746 YLPELASSNRTVRSFG---ERAAMNTPIQGTAADIIKKAMVDIY---------------- 786 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 N N +L ++ ++ Sbjct: 787 ----------NALKENEYRSKL--------------------------ILQVHDE---LI 807 Query: 626 LTVH-DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + VH DE+ + ++ M +PL A+ + + + Sbjct: 808 IEVHRDEV--------DEIRDLVKDKMEGVVK--MDVPLVADIHVGENW 846 >gi|320093718|ref|ZP_08025583.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str. F0338] gi|319979339|gb|EFW10829.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str. F0338] Length = 936 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 90/620 (14%), Positives = 168/620 (27%), Gaps = 147/620 (23%) Query: 82 ACFNLDIPIHRWICTLVLARSNGLP----SALKAVGEALKLSSQKMEEGKELIARFCKGE 137 + ++ A +A VG L L L +GE Sbjct: 433 RAQGWTL-GEECFDVMLAAYLVAPDQRSYAAADLVGRVLGLDVGGGAPDDALFDLAAEGE 491 Query: 138 T--HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTIN 193 R + + E E + + Sbjct: 492 GPGVAGARLGRLCAALHPLR---------AELGEALRGSGEAGLLSDVEMPTAAVLAGME 542 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G VD A L+ + + + + ++ V + ++L+ LF GL Sbjct: 543 RVGIGVDSARLGALSDELGGDVERAREGALAVLGREV-NLSSPKQLQEVLFEHFGLPRTR 601 Query: 254 LTET---TCQRVLSSNKKL--------TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 T+T T L + +R R +++L+ ++ DG Sbjct: 602 RTKTGYTTNAEALQDLYAKTAERGGDGHEFLGHLLAHRDRIKLKQ--MVDSLIASVADDG 659 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 R+ T A+ TGR + QN+P S Sbjct: 660 RIHTTFSQ-VAAATGRLASADPNLQNIPARSADGMR------------------------ 694 Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G + L+ AD + IE R++A ++ ++ + AF +GEDL+ T + F Sbjct: 695 -IRGGFVAGPGFEALMSADYSQIEMRIMAHLSQDEGLIGAFNSGEDLHRTMASMVFGTPV 753 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 A+VT QR+ K L Y K + L Sbjct: 754 AEVTAQQRSRIKATSYGLAYG-----LSKYGLSKQLG----------------------- 785 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 +++ + ++ V + L + Sbjct: 786 ----------------IPVPEAAALRERYFERFGGVRDYLESLVDQARS--RGYTETMYH 827 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 R D+G++ R Sbjct: 828 ------------------------RRRYLPDLGSDN---RQRREMAERAALNAP------ 854 Query: 602 VQAVSRDILAEGMM----NATKAG--YDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSN 654 +Q + DI+ M+ +AG +++ +HDE++ E + + M Sbjct: 855 IQGSAADIMKLAMIGVVGALGRAGLRSRVLVQIHDELLVEVAPGERERVEEAVRQEMAGV 914 Query: 655 PSWAKGLPLKAEGYESKRYR 674 S +PL ++ Sbjct: 915 AS--LRVPLDVSVGVGPSWQ 932 >gi|312133000|ref|YP_004000339.1| pola [Bifidobacterium longum subsp. longum BBMN68] gi|311773986|gb|ADQ03474.1| PolA [Bifidobacterium longum subsp. longum BBMN68] Length = 955 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 95/672 (14%), Positives = 191/672 (28%), Gaps = 154/672 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A + + L++ + H E L +LD+ + Sbjct: 404 IAVAT-ATSAAIVPLPITDTLRAQFARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 460 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 T + ++ +A + I + + D + E Sbjct: 461 MFDTKLAGYLAQPDFHADSLKQAAEHFLD--------IHFTETEQPSQGTLDFDDDQVEE 512 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVA 202 D+ + R + L P+ + ++ W + + G VD Sbjct: 513 DPNELR---LRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSV 569 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----T 258 ++ E + QE+ G + + ++L+ LF + GL T++ T Sbjct: 570 RLVSMRDQFAAE-ARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTT 628 Query: 259 CQRVLSSN-------KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQF 310 L ++ + +R ++ + + TL++A N SD R+ T + Sbjct: 629 NAAALQDLYVKSVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFEQ 686 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 A+ TGR S QN+P + + E +R + Sbjct: 687 TVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRGVFVP 720 Query: 371 SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 EG + L+ D + +E R++A ++ ++ ++AF +G D + + + + Q+T DQR Sbjct: 721 GEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQR 780 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 + K M L Y Sbjct: 781 SHVKAMSYGLAY-----GLSTYGL------------------------------------ 799 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 A + E +K + +V + L + Sbjct: 800 ---AQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANARE------------------- 837 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 GR + + + + +Q + DI Sbjct: 838 -------KGYTETIFGRRRYFPALHSTNRVAREAAERA---------ALNAPIQGSAADI 881 Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLP 662 + M+ A I+L +HDE+V E + + L M A +P Sbjct: 882 MKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VP 939 Query: 663 LKAEGYESKRYR 674 L ++ Sbjct: 940 LDVSCGIGSDWQ 951 >gi|322690826|ref|YP_004220396.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217] gi|320455682|dbj|BAJ66304.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217] Length = 950 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 96/672 (14%), Positives = 192/672 (28%), Gaps = 154/672 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A + + L L++ + H E L +LD+ + Sbjct: 399 IAVAT-ATSAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 455 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 T + ++ +A + I + + D + E Sbjct: 456 MFDTKLAGYLAQPDFHADSLKQAAEHFLD--------IHFTETEQPSQGTLDFDDDQVEE 507 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVA 202 D+ + R + L P+ + ++ W + + G VD Sbjct: 508 DPNEHR---LRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSV 564 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----T 258 ++ E + QE+ G + + ++L+ LF + GL T++ T Sbjct: 565 RLVSMRDQFAAE-ARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTT 623 Query: 259 CQRVLSSN-------KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQF 310 L ++ + +R ++ + + TL++A N SD R+ T + Sbjct: 624 NAAALQDLYVKSVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFEQ 681 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 A+ TGR S QN+P + + E +R + Sbjct: 682 TVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRGVFVP 715 Query: 371 SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 EG + L+ D + +E R++A ++ ++ ++AF +G D + + + + Q+T DQR Sbjct: 716 GEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQR 775 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 + K M L Y Sbjct: 776 SHVKAMSYGLAY-----GLSTYGL------------------------------------ 794 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 A + E +K + +V + L + Sbjct: 795 ---AQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANARE------------------- 832 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 GR + + + + +Q + DI Sbjct: 833 -------KGYTETIFGRRRYFPALHSTNRVAREAAERA---------ALNAPIQGSAADI 876 Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLP 662 + M+ A I+L +HDE+V E + + L M A +P Sbjct: 877 MKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VP 934 Query: 663 LKAEGYESKRYR 674 L ++ Sbjct: 935 LDVSCGIGSDWQ 946 >gi|189439601|ref|YP_001954682.1| DNA polymerase I [Bifidobacterium longum DJO10A] gi|227546057|ref|ZP_03976106.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 55813] gi|189428036|gb|ACD98184.1| DNA polymerase I [Bifidobacterium longum DJO10A] gi|227213504|gb|EEI81363.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517101|emb|CBK70717.1| DNA polymerase I [Bifidobacterium longum subsp. longum F8] Length = 955 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 96/672 (14%), Positives = 192/672 (28%), Gaps = 154/672 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A + + L L++ + H E L +LD+ + Sbjct: 404 IAVAT-ATSAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 460 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 T + ++ +A + I + + D + E Sbjct: 461 MFDTKLAGYLAQPDFHADSLKQAAEHFLD--------IHFTETEQPSQGTLDFDDDQVEE 512 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVA 202 D+ + R + L P+ + ++ W + + G VD Sbjct: 513 DPNEHR---LRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSV 569 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----T 258 ++ E + QE+ G + + ++L+ LF + GL T++ T Sbjct: 570 RLVSMRDQFAAE-ARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTT 628 Query: 259 CQRVLSSN-------KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQF 310 L ++ + +R ++ + + TL++A N SD R+ T + Sbjct: 629 NAAALQDLYVKSVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFEQ 686 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 A+ TGR S QN+P + + E +R + Sbjct: 687 TVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRGVFVP 720 Query: 371 SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 EG + L+ D + +E R++A ++ ++ ++AF +G D + + + + Q+T DQR Sbjct: 721 GEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQR 780 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 + K M L Y Sbjct: 781 SHVKAMSYGLAY-----GLSTYGL------------------------------------ 799 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 A + E +K + +V + L + Sbjct: 800 ---AQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANARE------------------- 837 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 GR + + + + +Q + DI Sbjct: 838 -------KGYTETIFGRRRYFPALHSTNRVAREAAERA---------ALNAPIQGSAADI 881 Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLP 662 + M+ A I+L +HDE+V E + + L M A +P Sbjct: 882 MKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VP 939 Query: 663 LKAEGYESKRYR 674 L ++ Sbjct: 940 LDVSCGIGSDWQ 951 >gi|317481896|ref|ZP_07940923.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA] gi|316916687|gb|EFV38082.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA] Length = 950 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 96/672 (14%), Positives = 192/672 (28%), Gaps = 154/672 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A + + L L++ + H E L +LD+ + Sbjct: 399 IAVAT-ATSAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 455 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 T + ++ +A + I + + D + E Sbjct: 456 MFDTKLAGYLAQPDFHADSLKQAAEHFLD--------IHFTETEQPSQGTLDFDDDQVEE 507 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVA 202 D+ + R + L P+ + ++ W + + G VD Sbjct: 508 DPNEHR---LRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSV 564 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----T 258 ++ E + QE+ G + + ++L+ LF + GL T++ T Sbjct: 565 RLVSMRDQFAAE-ARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTT 623 Query: 259 CQRVLSSN-------KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQF 310 L ++ + +R ++ + + TL++A N SD R+ T + Sbjct: 624 NAAALQDLYVKSVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFEQ 681 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 A+ TGR S QN+P + + E +R + Sbjct: 682 TVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRGVFVP 715 Query: 371 SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 EG + L+ D + +E R++A ++ ++ ++AF +G D + + + + Q+T DQR Sbjct: 716 GEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQR 775 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 + K M L Y Sbjct: 776 SHVKAMSYGLAY-----GLSTYGL------------------------------------ 794 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 A + E +K + +V + L + Sbjct: 795 ---AQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANARE------------------- 832 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 GR + + + + +Q + DI Sbjct: 833 -------KGYTETIFGRRRYFPALHSTNRVAREAAERA---------ALNAPIQGSAADI 876 Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLP 662 + M+ A I+L +HDE+V E + + L M A +P Sbjct: 877 MKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VP 934 Query: 663 LKAEGYESKRYR 674 L ++ Sbjct: 935 LDVSCGIGSDWQ 946 >gi|322688838|ref|YP_004208572.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F] gi|320460174|dbj|BAJ70794.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F] Length = 950 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 96/672 (14%), Positives = 192/672 (28%), Gaps = 154/672 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A + + L L++ + H E L +LD+ + Sbjct: 399 IAVAT-ATSAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 455 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 T + ++ +A + I + + D + E Sbjct: 456 MFDTKLAGYLAQPDFHADSLKQAAEHFLD--------IHFTETEQPSQGTLDFDDDQVEE 507 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVA 202 D+ + R + L P+ + ++ W + + G VD Sbjct: 508 DPNEHR---LRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSV 564 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----T 258 ++ E + QE+ G + + ++L+ LF + GL T++ T Sbjct: 565 RLVSMRDQFAAE-ARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTT 623 Query: 259 CQRVLSSN-------KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQF 310 L ++ + +R ++ + + TL++A N SD R+ T + Sbjct: 624 NAAALQDLYVKSVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFEQ 681 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 A+ TGR S QN+P + + E +R + Sbjct: 682 TVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRGVFVP 715 Query: 371 SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 EG + L+ D + +E R++A ++ ++ ++AF +G D + + + + Q+T DQR Sbjct: 716 GEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQR 775 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 + K M L Y Sbjct: 776 SHVKAMSYGLAY-----GLSTYGL------------------------------------ 794 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 A + E +K + +V + L + Sbjct: 795 ---AQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANARE------------------- 832 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 GR + + + + +Q + DI Sbjct: 833 -------KGYTETIFGRRRYFPALHSTNRVAREAAERA---------ALNAPIQGSAADI 876 Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLP 662 + M+ A I+L +HDE+V E + + L M A +P Sbjct: 877 MKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VP 934 Query: 663 LKAEGYESKRYR 674 L ++ Sbjct: 935 LDVSCGIGSDWQ 946 >gi|257466192|ref|ZP_05630503.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] Length = 882 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 84/656 (12%), Positives = 182/656 (27%), Gaps = 138/656 (21%) Query: 36 GFDDHPVELWDCVHDPVMPQVLKEALEN----TDVTIVAHNSY-----FERTVLKACFNL 86 + H LE+ + + + ++ L Sbjct: 343 CTSSNKSIYIPLFHIG--------LLESNIDLEECQKLFFSLKGKLYTYDLKELLK-LGF 393 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 +++A + + ++ E + E L + Sbjct: 394 SFQ-KPVYD-MMIAYHLVSSQTKED---YTSIGQYYLKTIAEDEKTVFAKQKIETLSIDS 448 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 N C + + + L E L + ++ +G +D Sbjct: 449 YGNFLLKRSQILYSCLEPLEKDLKEKELENVLWETELPLIPVLASMEKQGIKIDRKYFQK 508 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263 + ++ + L++E+ + ++L LFL+ L T+ +T VL Sbjct: 509 YSLELNEKLVLLEKEIWKEAG-EEFNINSPKQLGEILFLKLNLPTGKKTKTGFSTDVEVL 567 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + Q + ++ ++ + + + D R+ +G + TGR S Sbjct: 568 ENLSSQGFQIATNLLEYRKLAKLKNTYVDPIPKMVKFDDRIHTCYHQIG-TVTGRLSSSD 626 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+P + +R IA +G KL+ D + Sbjct: 627 PNLQNIPVKTEEGIR-------------------------IRQGFIARDGWKLLSIDYSQ 661 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 +E RVLA ++ ++ +KA++ +DL+ T + F Sbjct: 662 VELRVLAALSKDENLVKAYQEKQDLHSVTAKKIF-------------------------- 695 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + + NF + A E Sbjct: 696 -----------------ELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKELGISVKDA 738 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 K + ++ RV++ E+ + EQ + + Sbjct: 739 AEYIKRYFAQYPRVAQFETEIIEFAEQ--------------------------HGYVETY 772 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----- 618 GR + + + + Q R +VQ + +IL + M+ Sbjct: 773 FGRKRIIDGIHSKNRMVKN---QAERMA------VNTVVQGTAAEILKKVMIKIYSWLLG 823 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 K ++L VHDE++ E + L + M + + + L+ + Sbjct: 824 KTDIYLLLQVHDELIFEIQEERVEEYVKTLTNFMKNTIQL-EEVELEVNTNIGNTW 878 >gi|296111925|ref|YP_003622307.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154] gi|295833457|gb|ADG41338.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154] Length = 895 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 85/629 (13%), Positives = 174/629 (27%), Gaps = 122/629 (19%) Query: 56 VLKEALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LK 110 L+ +EN + N F VL + + L+ A L Sbjct: 374 ELRSVIENAAIIKNVFNVKAQF---VLFKRLGMTLRGVE-FDFLLAAYLLDTTDNDNELS 429 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + + E+ A++ E + +L + + Sbjct: 430 TLAQRFDFYVTPDEDIYGKGAKYAVPEETSRVLVHLAHKADVLMQL-----EQPAFAALQ 484 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++ + E L ++ + RG +D + ++ + +E + G V Sbjct: 485 DHEQTHLYTEIELPLAHVLADMEYRGIKIDQTRLREIGTDLEERIDTI-KEAIFIEAGEV 543 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF + GL + T+ +T VL P + R ++ Sbjct: 544 FNINSPKQLGILLFEKMGLPVIKKTKTGYSTAVDVLEKLAPQAPIVDHILQYRQ-LAKLK 602 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 ++ L+ ++ T ++TGR S QN+P + + + Sbjct: 603 STYVDGLLSVVHEKDSKIHTRFLQTLTQTGRLSSIDPNLQNIPMRTEAGRK--------- 653 Query: 348 TSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 +R+ + S ++ AD + IE RVLA M G++ +AF GE Sbjct: 654 ----------------IRTAFVPSQPDWQIFGADYSQIELRVLAHMTGDKNMQQAFLNGE 697 Query: 407 DLYVTTYARSFNVAPAQV-TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D++ T F + R K + + Y L ++ Sbjct: 698 DIHAETARAVFGLDDNVPVDPLMRRTAKAVNFGIVYGIS-----DFGLANNLGISRAEAK 752 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + +E+ + ++ E + R K+ + Sbjct: 753 RFIETYFQEFPKIHEWMTQIKAKAHEQGFIETIAKR--RRYLPEIGSKNFNLRSF---AE 807 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + + G A K + + Sbjct: 808 RTAMNSPIQGSAADIIKIAMIKV------------------------------------- 830 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 L EN +QA ++ ++ E P + S Sbjct: 831 --------ADALQENGMQA-------RMLLQVHDE-----------LIFEAPSDEIAELS 864 Query: 646 MLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 L +M S +P+ E + + Sbjct: 865 ELVTRVMDSAV--VLDVPMLVESHSGNTW 891 >gi|315917350|ref|ZP_07913590.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] gi|313691225|gb|EFS28060.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] Length = 884 Score = 244 bits (623), Expect = 4e-62, Method: Composition-based stats. Identities = 84/656 (12%), Positives = 182/656 (27%), Gaps = 138/656 (21%) Query: 36 GFDDHPVELWDCVHDPVMPQVLKEALEN----TDVTIVAHNSY-----FERTVLKACFNL 86 + H LE+ + + + ++ L Sbjct: 345 CTSSNKSIYIPLFHIG--------LLESNIDLEECQKLFFSLKGKLYTYDLKELLK-LGF 395 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 +++A + + ++ E + E L + Sbjct: 396 SFQ-KPVYD-MMIAYHLVSSQTKED---YTSIGQYYLKTIAEDEKTVFAKQKIETLSIDS 450 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 N C + + + L E L + ++ +G +D Sbjct: 451 YGNFLLKRSQILYSCLEPLEKDLKEKELENVLWETELPLIPVLASMEKQGIKIDRKYFQK 510 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263 + ++ + L++E+ + ++L LFL+ L T+ +T VL Sbjct: 511 YSLELNEKLVLLEKEIWKEAG-EEFNINSPKQLGEILFLKLNLPTGKKTKTGFSTDVEVL 569 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + Q + ++ ++ + + + D R+ +G + TGR S Sbjct: 570 ENLSSQGFQIATNLLEYRKLAKLKNTYVDPIPKMVKFDDRIHTCYHQIG-TVTGRLSSSD 628 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+P + +R IA +G KL+ D + Sbjct: 629 PNLQNIPVKTEEGIR-------------------------IRQGFIARDGWKLLSIDYSQ 663 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 +E RVLA ++ ++ +KA++ +DL+ T + F Sbjct: 664 VELRVLAALSKDENLVKAYQEKQDLHSVTAKKIF-------------------------- 697 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + + NF + A E Sbjct: 698 -----------------ELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKELGISVKDA 740 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 K + ++ RV++ E+ + EQ + + Sbjct: 741 AEYIKRYFAQYPRVAQFETEIIEFAEQ--------------------------HGYVETY 774 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----- 618 GR + + + + Q R +VQ + +IL + M+ Sbjct: 775 FGRKRIIDGIHSKNRMVKN---QAERMA------VNTVVQGTAAEILKKVMIKIYSWLLG 825 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 K ++L VHDE++ E + L + M + + + L+ + Sbjct: 826 KTDIYLLLQVHDELIFEIQEERVEEYVKTLTNFMKNTIQL-EEVELEVNTNIGNTW 880 >gi|254797027|ref|YP_003081864.1| DNA polymerase I [Neorickettsia risticii str. Illinois] gi|254590261|gb|ACT69623.1| DNA polymerase I [Neorickettsia risticii str. Illinois] Length = 816 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 80/629 (12%), Positives = 176/629 (27%), Gaps = 167/629 (26%) Query: 57 LKEALENTDVTIVAH--NSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVG 113 +++ L + + + H N + D + V+A L + L+ + Sbjct: 333 VQDLLTDQSIKKIFHSDNI----------PHPDPANESFEDLKVIAYPLNTLNTDLEYLF 382 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + K L + K ++ Sbjct: 383 SHYLGETSPEAFHKRLNELYDKLR-----------------------NAMFTEKVLTLYY 419 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 +++ + + + G +DV +L+ + + +++ ++ T G S Sbjct: 420 KVDKPL------INVIKHMEKNGISLDVEQLLSLSTQISGKLEEIENKIFD-TAGKTFSL 472 Query: 234 RCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + ++L LF E + ++ + +T VL+S + + + Sbjct: 473 QSPKQLGKVLFEEMQIPVQKKLKTGLSSTDNEVLTSLSSQGYEIADYLLSWRHYIKLKTA 532 Query: 290 KLNTLVEAMNSDGRLR--GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 ++ L+ +N + T + TGR S QN+PR Sbjct: 533 YIDPLLLKVNPSEKKHRISTTYSTTLTLTGRLSSSNPNLQNIPR---------------- 576 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R A EG + AD + IE R+LA++A + A +G D Sbjct: 577 -------------EKNIRKIFTAKEGHYFLCADYSQIELRILAYIANVERLKCALASGTD 623 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 L+ T ++ F ++T + R K + + Y + L + Sbjct: 624 LHTLTASQIFKT--DKITPNLRNKAKAVNFGIVYG-----ITNFGLSKQLAI-------- 668 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + ++ + N + Sbjct: 669 -------------------------------SKEEAASYIQKYFDEYPEIKSYMNHIRNQ 697 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 ++ + + R +++ ++ + Sbjct: 698 AKK--------------------------DTYVKTIMNRKCPIQNINSDN---RAISLIA 728 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAG---YDIVLTVHDEIVCETPDTDEFN- 643 R +Q + DI+ M+ + +V+ VHDE+V E Sbjct: 729 ERSAINAP------IQGTAADIIRAAMVRMAQEKELLSHMVMQVHDELVFELETDAIQQL 782 Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKR 672 A + +M G+PL E Sbjct: 783 AKKIKQIMEEP----HGIPLLVELKHGPN 807 >gi|23465554|ref|NP_696157.1| DNA polymerase I [Bifidobacterium longum NCC2705] gi|23326218|gb|AAN24793.1| DNA polymerase I [Bifidobacterium longum NCC2705] Length = 955 Score = 244 bits (622), Expect = 5e-62, Method: Composition-based stats. Identities = 96/672 (14%), Positives = 194/672 (28%), Gaps = 154/672 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A + + L + L++ + H E L +LD+ + Sbjct: 404 IAVAT-ATSAAIVSLPITDTLRAQLAQFLKSEHSRTIVHGYK-ELLHLLGAVDLDLDL-P 460 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 T + ++ +A + I + + D + E Sbjct: 461 MFDTKLAGYLAQPDFHADSLKQAAEHFLD--------IHFTETEQPSQGTLDFDDDQVEE 512 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVA 202 D+ + R + L P+ + ++ W + + G VD Sbjct: 513 DPNELR---LRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSV 569 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----T 258 ++ E + QE+ G+ + + ++L+ LF + GL T++ T Sbjct: 570 RLVSMRDQFAAE-ARQAQEMAWEYAGIEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTT 628 Query: 259 CQRVLSSN-------KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQF 310 L ++ + +R ++ + + TL++A N SD R+ T + Sbjct: 629 NAAALQDLYVKSVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFEQ 686 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 A+ TGR S QN+P + + E +R + Sbjct: 687 TVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRGVFVP 720 Query: 371 SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 EG + L+ D + +E R++A ++ ++ ++AF +G D + + + + Q+T DQR Sbjct: 721 GEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQR 780 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 + K M L Y Sbjct: 781 SHVKAMSYGLAY-----GLSTYGL------------------------------------ 799 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 A + E +K + +V + L + Sbjct: 800 ---AQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANARE------------------- 837 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 GR + + + + +Q + DI Sbjct: 838 -------KGYTETIFGRRRYFPALHSTNRVAREAAERA---------ALNAPIQGSAADI 881 Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLP 662 + M+ A I+L +HDE+V E + + L M A +P Sbjct: 882 MKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VP 939 Query: 663 LKAEGYESKRYR 674 L ++ Sbjct: 940 LDVSCGIGSDWQ 951 >gi|110802827|ref|YP_699271.1| DNA polymerase I [Clostridium perfringens SM101] gi|110683328|gb|ABG86698.1| DNA polymerase I [Clostridium perfringens SM101] Length = 866 Score = 244 bits (622), Expect = 5e-62, Method: Composition-based stats. Identities = 95/644 (14%), Positives = 179/644 (27%), Gaps = 130/644 (20%) Query: 39 DHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 D L + + + LKE EN D+ ++ T LK ++ Sbjct: 344 DEKNYLINFKELAQEEENIKALKEFFENEDILKNGYSIKNALTALKK-LGIEFKGLA-FD 401 Query: 96 TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 + A GE LS K + + + + + + Sbjct: 402 CELAAYLIDSSK-----GEYTLLSLINNYLSKFPNVKDGEEDLVGISFMKELTLVLKKKI 456 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 + + + + + ++ G+ V+ + L+ E Sbjct: 457 EEEKMERLMYDIELPLET--------------VLSSMESIGFKVNKDILDELSIKFKREL 502 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272 + +E+ L + ++L LF + L + T+ +T VL K P Sbjct: 503 EETQKEIFEL-ADEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPI 561 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 ++ + S+ + L +++DG + T + TGR S QN+P Sbjct: 562 IEKI-TYFRQLSKIYSTYVEGLKSVIDTDGSIHSTFNQTVTT-TGRLSSTEPNLQNIPIK 619 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAW 391 E +R I EG L+ AD + IE RVLA Sbjct: 620 YEMGRE-------------------------IRKVFIPKEEGDLLISADYSQIELRVLAH 654 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++G++ + AF D++ T + F V +VT R+ K + + Y G + + Sbjct: 655 ISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ- 713 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 LN++ + E + + + + + R Sbjct: 714 ----DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNR--RRYIPEAN 767 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + V L + G A K V + K+ N L S L Sbjct: 768 ASNKIVKALG---ERLAMNAPIQGTAADIIKLAMVNVYNKLKELN-----LNSKLILQVH 819 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 D DI+ + Sbjct: 820 DELIINVVKGEL------------------------DIVKK------------------- 836 Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +L M + +PL + + + K Sbjct: 837 --------------LLKEEMENTIK--LSVPLDVDVNVGEDWYK 864 >gi|257463768|ref|ZP_05628156.1| DNA polymerase I [Fusobacterium sp. D12] gi|317061312|ref|ZP_07925797.1| DNA polymerase I [Fusobacterium sp. D12] gi|313686988|gb|EFS23823.1| DNA polymerase I [Fusobacterium sp. D12] Length = 894 Score = 243 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 80/600 (13%), Positives = 168/600 (28%), Gaps = 135/600 (22%) Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 +++A + + +K+ E ++ + K E+ + + Sbjct: 409 KPVYD-MMIAYHLVSSQTKEDYTLIGQYYLKKIAEDEKTVFAKQKLESLSAEVYGDFLLN 467 Query: 151 REAWRLFGEYCKGDV--------TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 R Y D+ + ++ E L + + G +D Sbjct: 468 ----RAGVLYSCLDILEEDVKEKELEAVLW-------ETELPLIPVLADMERIGIKIDRK 516 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + + + L++ + + ++L LFL+ L T+ +T Sbjct: 517 YFEAYSLELTEKLALLEKAIWEEAG-EEFNLNSPKQLGEILFLKLNLPTGKKTKTGFSTD 575 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL Q + ++ ++ + + R+ +G + TGR Sbjct: 576 VEVLEHLSSQGFQIASNLLEYRKLAKLKNTYVDPIPKMTGEGDRIHTCYHQIG-TVTGRL 634 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+P + +R IA EG KL+ Sbjct: 635 SSSDPNLQNIPVKTEEGIR-------------------------IRQGFIAREGWKLLSI 669 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + +E RVLA ++ ++ LKA++ +DL+ T R F Sbjct: 670 DYSQVELRVLASLSKDENLLKAYQEKQDLHSVTAKRIF---------------------- 707 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 + + NF + A E Sbjct: 708 ---------------------ELQEDEEVSREQRIMAKIINFSIIYGKTPFGLAKELGIS 746 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 K + ++ RV++ ++ E+ + Sbjct: 747 VKDAGEYIKRYFAQYPRVAQFERQVITFAEE--------------------------HGY 780 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT- 618 + GR + + + + + Q R +VQ + +IL + M+ Sbjct: 781 VETYFGRRRIIDGIHSKNKMVKS---QAERMA------VNTVVQGTAAEILKKVMIKIYS 831 Query: 619 ----KAGYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 K ++L VHDE++ E + L M + + L+ + Sbjct: 832 WLSQKTDIHLLLQVHDELIFEIQEGKLQEYEENLIRFMRETIQL-EEVELEVNTNIGDTW 890 >gi|239621897|ref|ZP_04664928.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515088|gb|EEQ54955.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 950 Score = 243 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 96/672 (14%), Positives = 194/672 (28%), Gaps = 154/672 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A + + L + L++ + H E L +LD+ + Sbjct: 399 IAVAT-ATSAAIVSLPITDTLRAQLAQFLKSEHSRTIVHGYK-ELLHLLGAVDLDLDL-P 455 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 T + ++ +A + I + + D + E Sbjct: 456 MFDTKLAGYLAQPDFHADSLKQAAEHFLD--------IHFTETEQPSQGTLDFDDDQVEE 507 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVA 202 D+ + R + L P+ + ++ W + + G VD Sbjct: 508 DPNELR---LRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSV 564 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----T 258 ++ E + QE+ G+ + + ++L+ LF + GL T++ T Sbjct: 565 RLVSMRDQFAAE-ARQAQEMAWEYAGIEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTT 623 Query: 259 CQRVLSSN-------KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQF 310 L ++ + +R ++ + + TL++A N SD R+ T + Sbjct: 624 NAAALQDLYVKSVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFEQ 681 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 A+ TGR S QN+P + + E +R + Sbjct: 682 TVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRGVFVP 715 Query: 371 SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 EG + L+ D + +E R++A ++ ++ ++AF +G D + + + + Q+T DQR Sbjct: 716 GEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQR 775 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 + K M L Y Sbjct: 776 SHVKAMSYGLAY-----GLSTYGL------------------------------------ 794 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 A + E +K + +V + L + Sbjct: 795 ---AQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANARE------------------- 832 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 GR + + + + +Q + DI Sbjct: 833 -------KGYTETIFGRRRYFPALHSTNRVAREAAERA---------ALNAPIQGSAADI 876 Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLP 662 + M+ A I+L +HDE+V E + + L M A +P Sbjct: 877 MKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VP 934 Query: 663 LKAEGYESKRYR 674 L ++ Sbjct: 935 LDVSCGIGSDWQ 946 >gi|119025698|ref|YP_909543.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703] gi|118765282|dbj|BAF39461.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703] Length = 948 Score = 243 bits (620), Expect = 7e-62, Method: Composition-based stats. Identities = 103/660 (15%), Positives = 200/660 (30%), Gaps = 142/660 (21%) Query: 40 HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99 D M Q L+ + ++V H E L +++P T + Sbjct: 402 GEAIRIDVFSPD-MVQCLQRLFDRYHHSMVVHGYK-EHAHLLGSIGVELP-EPLFDTKLA 458 Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGKELIAR-----FCKGETHECLYDRNKPNHREAW 154 + + E + A F + E ++ D Sbjct: 459 GYLAHPDFHADTLEQVAAHFLDLHIEAQAEAATQGTLDFDEPEENDSKNDELILTRTAIV 518 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 L EY G + L + + + G VD+A + + + Sbjct: 519 GLLAEYLAGVLDK--REQFGLLKSIE--LPVSQVLHGMEQVGAQVDMARLVQMRDQLAAD 574 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLT 270 + + V + + ++L+ LF + GL T++ T L + + + Sbjct: 575 AAQAQETAWQFAGEQV-NLQSPKQLQKILFEDMGLKPTKKTKSGSYTTNAAALQTLRDRS 633 Query: 271 PQ-------AIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGC 322 + +R + + + TL++A N DGR+ T + A+ TGR S Sbjct: 634 YDNDRACQFLDALLMHREKNKLKQI--VQTLIDATNRHDGRIHTTFEQTVAA-TGRLSSV 690 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADL 381 QN+P + E +RS + EG + L+ +D Sbjct: 691 DPNLQNIPNRDPAGRE-------------------------IRSAFVPGEGFESLLSSDY 725 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + +E R++A ++G++ ++AF +G+D + + + + +T DQR+ K M L Sbjct: 726 SQVELRIMADLSGDEALIEAFRSGKDFHKYVASLVYGIPVDDITSDQRSHVKAMSYGL-- 783 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 GL+ A +K Sbjct: 784 ------------AYGLSTYGLAQQLKIK------------------------------PK 801 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 E +K + +V E L + + Sbjct: 802 EAESLKNQYFATFGKVHEYLESLVSSARE--------------------------KGYTE 835 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620 GR + + + + R +Q + DI+ M+ A A Sbjct: 836 TIFGRRRYFPGLKSPNRAVRDA---AERAALNAP------IQGSAADIMKIAMIRAYDAL 886 Query: 621 -----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 G ++L +HDE+V E +E A +++ M + A +PL ++ Sbjct: 887 QEANLGSRLILQIHDELVVEIAPGEEKQATALVKDAMEHAVTMA--VPLDVSTGIGSDWQ 944 >gi|315174878|gb|EFU18895.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1346] Length = 882 Score = 243 bits (620), Expect = 7e-62, Method: Composition-based stats. Identities = 80/652 (12%), Positives = 183/652 (28%), Gaps = 122/652 (18%) Query: 33 FAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 + ++ + P + L + +++ L Sbjct: 338 VGLAWGNNKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVGK--MT 393 Query: 91 HRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 L+ A V + + + +E E ++ + Sbjct: 394 GIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 453 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 +A + K D +T + + + E L + + G VD + Sbjct: 454 ARKIKAIQFLT--SKLDSELTEK--NQADLFYKMELPLSRILGDMEITGIRVDATRLKEM 509 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264 ++++++ + + ++L LF + GL + T+ +T VL Sbjct: 510 QVEFSERLKEIEEKIYAEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 568 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ P + R ++ + L++ + D ++ ++TGR S Sbjct: 569 QLKEQAPIVADILTYRQ-IAKIQSTYVEGLLKVIQPDNKIHTRYVQ-TLTQTGRLSSVDP 626 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV-VADLAG 383 QN+P + +R + E L+ +D + Sbjct: 627 NLQNIPIRLEEGRK-------------------------IREAFVPREDNWLIFSSDYSQ 661 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQ 442 IE RVLA ++ ++ +AF G+D++ +T R F V VT + R K + + Y Sbjct: 662 IELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYG 721 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + L + ++ E++ + + + + + + Sbjct: 722 IS-----DYGLSQNLGITREQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR- 775 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 R ++ + + T G A K + + Sbjct: 776 -RRYLSDINSRNFNLRSF---AERTAINTPIQGSAADILKIAMIEM-------------- 817 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 +L E +QA ++ Sbjct: 818 -------------------------------AHRLKEEKLQAT-------MLLQVHDE-- 837 Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E P+++ ++ +M S +PL + K + Sbjct: 838 ---------LVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878 >gi|330872973|gb|EGH07122.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4] Length = 321 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 67/424 (15%), Positives = 117/424 (27%), Gaps = 115/424 (27%) Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRT 316 T + VL+ + +V S+ + L E +N GR+ + A T Sbjct: 1 TAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-VT 59 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + +R +A +G KL Sbjct: 60 GRLSSSDPNLQNIPIRTAEGRR-------------------------IRQAFVAPKGYKL 94 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R++A +A ++ L AF D++ T A F V VT D R K + Sbjct: 95 LAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAIN 154 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G++ A + Sbjct: 155 F--------------GLIYGMSAFGLAKQI------------------------------ 170 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + ++ V + + Sbjct: 171 GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE-------------------------- 204 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 + GR L D+ + + R +Q + DI+ + M+ Sbjct: 205 QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMAINAP------MQGTAADIIKKAMVA 255 Query: 617 ATK------AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYE 669 ++L VHDE+V E + + M+ A +PL E Sbjct: 256 VNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIRPHMSGAAELA--VPLLVEVGV 313 Query: 670 SKRY 673 + Sbjct: 314 GNNW 317 >gi|294790756|ref|ZP_06755914.1| DNA polymerase I [Scardovia inopinata F0304] gi|294458653|gb|EFG27006.1| DNA polymerase I [Scardovia inopinata F0304] Length = 976 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 89/621 (14%), Positives = 190/621 (30%), Gaps = 150/621 (24%) Query: 95 CTLVLARSN--GLPSALKAVGEA----LKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 T + + ++ + L L +++ + G + + Sbjct: 461 DTRLEGYLVQPDATAKIETAAQYAQYFLHLETEENPQPHPQQGALDLGNDSDLSSQGSNE 520 Query: 149 NHREAWRLFGEYCKGDVT------VTREIFKRLEPLSSKEQELWY----------LDQTI 192 +++ + D + + P+ K QE+ + + Sbjct: 521 DNQPDQEDQAAQARRDARDAKECAYILALHQLFYPVLEKRQEISLLKDIELPVSTVLARM 580 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G VD + + + + + + G + + ++L+ LF + GL Sbjct: 581 ELTGAGVDYSRLRNMYDSFAAQAAQAE-HIAWDQAGKQINLQSPKQLQAVLFDDMGLEPT 639 Query: 253 DLTET----TCQRVLSSN--KKLTPQAIQ----VFNNRMRASRSAVLKLNTLVEAMN-SD 301 T++ T L + + + ++ + + TL++++N SD Sbjct: 640 RKTKSGGRTTNAAALQELYIRSVHNERANTFLGALLRHREVNKLKQI-VQTLMDSVNTSD 698 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 GR+ T + A+ TGR S QN+P + E Sbjct: 699 GRIHTTFEQTVAA-TGRLSSTDPNLQNIPNRNVEGRE----------------------- 734 Query: 362 DCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R+ + S+G L+ +D + +E R++A ++G++ ++AF +G D + + + V Sbjct: 735 --IRAAFVPSDGYLSLLSSDYSQVELRLMAHLSGDEALIEAFRSGADFHKYVASLVYQVP 792 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 Q+T DQR+ K M L Y Sbjct: 793 LDQITPDQRSHIKAMSYGLAY-----GLSTYGL--------------------------- 820 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 A + +++K + +V + L + + G Sbjct: 821 ------------AQQLGISPAQSDQLKAKYFSTFGKVHDYLESLVSQAK---KRGYTTTM 865 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 GR + D+ ++R R Sbjct: 866 -----------------------FGRRRYFPDLLSSR---RQLRDAAQRAALNAP----- 894 Query: 601 IVQAVSRDILAEGMMN----ATKAG--YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTS 653 +Q + DI+ M +AG I+L +HDE+V E +E +++ + M Sbjct: 895 -IQGSAADIMKIAMNKAATSLDEAGVKSRIILQIHDELVVELASGEEEEVTALVKNAMEE 953 Query: 654 NPSWAKGLPLKAEGYESKRYR 674 A +PL ++ Sbjct: 954 AVELA--VPLDVSTGIGSDWQ 972 >gi|239905004|ref|YP_002951743.1| DNA polymerase I [Desulfovibrio magneticus RS-1] gi|239794868|dbj|BAH73857.1| DNA polymerase I [Desulfovibrio magneticus RS-1] Length = 888 Score = 243 bits (619), Expect = 9e-62, Method: Composition-based stats. Identities = 98/601 (16%), Positives = 178/601 (29%), Gaps = 145/601 (24%) Query: 88 IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +P+ W + A A + ++L EG + Sbjct: 416 VPLAVWFDLGLAAYLLNPESRAYAFDRLRDSLFADPSVDTEG-------VSPTDNARAAA 468 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 G + + + + + G +D Sbjct: 469 LLADVLAARLETAGL-SRLVAELEMPL--------------VPVLVAMERAGIGIDKTAF 513 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQ 260 V L+ ++ +L + R ++L L+ + GL T +T Q Sbjct: 514 AAFADEVAGRLAILETDIVALAG-KPFNPRSSQQLGEILYTDLGLKAHGKTPGGAASTSQ 572 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 L P ++ R + + L + + D R+ TL A+ TGR S Sbjct: 573 DALERLAGAHPLVDRILEFR-KLEKLRSTYLAPMPALADRDSRIHTTLN-NMATATGRLS 630 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380 QN+P +R+C A G +LV AD Sbjct: 631 SSNPNLQNIPIRGEFGRR-------------------------MRACFTAGPGNRLVAAD 665 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA ++GE L AF G D++ T A F+ + D+R K + Sbjct: 666 YSQIELRVLAHLSGESALLDAFAHGADIHARTAAILFDKPEEAIAPDERRQAKTIN---- 721 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 G+ + + Sbjct: 722 ----------FGLLYGMGPQKLS------------------------------RDLGIKL 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 A + + ++ +S + + +A ++ + + Sbjct: 742 DAAKAFIARYFERLPGLSAFYEGIVEAAKR--------------------------DGFV 775 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 +GR + D+G+ S + Q R+ +VQ + DI+ M+ A Sbjct: 776 TTLAGRRRLLPDIGSANS---QLSSQARRQAI------NTVVQGGAADIIKMAMLAAAGD 826 Query: 621 GYD------IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +VL +HDE++ ETP+ A + L LMT S A +PL+ + + + Sbjct: 827 AALAGLGAVLVLQIHDELLLETPEAAAKEAGARLAGLMTGVISLA--VPLEVDWGTGRTW 884 Query: 674 R 674 Sbjct: 885 G 885 >gi|269215934|ref|ZP_06159788.1| DNA polymerase I [Slackia exigua ATCC 700122] gi|269130193|gb|EEZ61271.1| DNA polymerase I [Slackia exigua ATCC 700122] Length = 905 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 79/501 (15%), Positives = 146/501 (29%), Gaps = 112/501 (22%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 + L + + G +DV + + V E + + L + ++L Sbjct: 506 DIDLPLVPVLAVMERVGARIDVDALAEMGRSVAEEIDGIRTRVFELAG-EEFNLDSPKQL 564 Query: 240 KTWLFLETGLHLEDLT---ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + GL T +T + LS + + P A ++ R ++ + L Sbjct: 565 SVVLFEKLGLPHGKKTQRGYSTDAKTLSKLEDVHPIAREILRYR-ELAKMESTYIEALPR 623 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 DG + + TGR S QN+P + Sbjct: 624 MRAGDGLVHTHFNQTVTT-TGRLSSSDPNLQNIPVRTEFGRR------------------ 664 Query: 357 LQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R C + G + AD + IE R+LA ++ ++ + AF +G D + +T AR Sbjct: 665 -------IRGCFVPLRTGDLFMSADYSQIELRLLAHLSRDEHLVHAFCSGADFHASTAAR 717 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F V +VT R+ K + + Y Q L + + E + Sbjct: 718 VFGVPLEEVTPSMRSRAKAVNFGIVYGQ-----QAFGLAQNLGIGFKEAQEMIDRYFEAY 772 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 F E Sbjct: 773 PGVRAFLDGTVEEVRACGYATTMF------------------------------------ 796 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 +RR +P + K R+ +N + Sbjct: 797 -----GRRRHIPELKAKNPAQRGF---------------GERTAMNHPMQG---SAADIV 833 Query: 596 KLTENIVQAVSRDILAEGMMNATKAG--YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMT 652 K+ N VQ G +++ VHDE+ P ++ +++ MT Sbjct: 834 KMAMNEVQ-----------RRLVDGGFAAQVMIQVHDELDLSVPVSELDAVGALVRDAMT 882 Query: 653 SNPSWAKGLPLKAEGYESKRY 673 + + +PL + +K + Sbjct: 883 NVVT--LEVPLIVDVQSAKTW 901 >gi|121730764|ref|ZP_01682858.1| DNA polymerase I [Vibrio cholerae V52] gi|121627663|gb|EAX60328.1| DNA polymerase I [Vibrio cholerae V52] Length = 317 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 63/419 (15%), Positives = 119/419 (28%), Gaps = 115/419 (27%) Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L P + R ++ + L + +N T + TGR S Sbjct: 2 LQELALDYPLPKVLIEYR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSST 60 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 QN+P + +R +A G K++ D + Sbjct: 61 DPNLQNIPVRNEEGRR-------------------------IRQAFVAPHGWKIMAVDYS 95 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + Sbjct: 96 QIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF----- 150 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 G++ A + Sbjct: 151 ---------GLIYGMS------------------------------AFGLAKQLGIPRGE 171 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + + +++ V + + Q + Sbjct: 172 AQEYMDKYFERYPGVMQYMEDTRSRAAQ--------------------------LGYVET 205 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--- 619 GR L ++ + + + R +Q + DI+ + M+ + Sbjct: 206 IFGRRLHLPEITSRNAMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIE 256 Query: 620 ----AGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +++ VHDE+V E ++ + LM S A +PL AE + Sbjct: 257 REGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 313 >gi|154487485|ref|ZP_02028892.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis L2-32] gi|154084003|gb|EDN83048.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis L2-32] Length = 895 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 101/660 (15%), Positives = 198/660 (30%), Gaps = 142/660 (21%) Query: 40 HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99 D M Q L+ + ++V H E L +++P T + Sbjct: 349 GEAIRIDVFSPD-MVQCLQRLFDRYHHSMVVHGYK-EHAHLLGSIGVELP-EPLFDTKLA 405 Query: 100 ARSNGLPSALKAV--GEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNKPNHREAW 154 + A L + + F + E ++ Sbjct: 406 GYLAHPDFHADTLEQAAAHFLDLHIEAQAEAATQGTLDFDEPEENDSKNGELILTRTAIV 465 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 L EY G + L + + + G VD+ + + + Sbjct: 466 GLLAEYLAGVLDK--REQFGLLKSIE--LPVSQVLHGMEQVGAQVDMTRLVQMRDQLAAD 521 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLT 270 + + V + + ++L+ LF + GL T++ T L + + + Sbjct: 522 AAQAQETAWQFAGEQV-NLQSPKQLQKILFEDMGLKPTKKTKSGSYTTNAAALQTLRDRS 580 Query: 271 PQ-------AIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGC 322 + +R + + + TL++A N DGR+ T + A+ TGR S Sbjct: 581 YDNDRACQFLDALLMHREKNKLKQI--VQTLIDATNRHDGRIHTTFEQTVAA-TGRLSSV 637 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADL 381 QN+P + E +RS + EG + L+ +D Sbjct: 638 DPNLQNIPNRDPAGRE-------------------------IRSAFVPGEGFESLLSSDY 672 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + +E R++A ++G++ ++AF +G+D + + + + +T DQR+ K M L Sbjct: 673 SQVELRIMADLSGDEALIEAFRSGKDFHKYVASLVYGIPVDDITSDQRSHVKAMSYGL-- 730 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 GL+ A +K Sbjct: 731 ------------AYGLSTYGLAQQLKIK------------------------------PK 748 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 E +K + +V E L + + Sbjct: 749 EAESLKNQYFATFGKVHEYLESLVSSARE--------------------------KGYTE 782 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620 GR + + + + R +Q + DI+ M+ A A Sbjct: 783 TIFGRRRYFPGLKSPNRAVRDA---AERAALNAP------IQGSAADIMKIAMIRAYDAL 833 Query: 621 -----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 G ++L +HDE+V E +E A +++ M + A +PL ++ Sbjct: 834 QEANLGSRLILQIHDELVVEIAPGEEKQATALVKDAMEHAVTMA--VPLDVSTGIGSDWQ 891 >gi|23336564|ref|ZP_00121775.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bifidobacterium longum DJO10A] Length = 682 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 96/672 (14%), Positives = 192/672 (28%), Gaps = 154/672 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A + + L L++ + H E L +LD+ + Sbjct: 131 IAVAT-ATSAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 187 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 T + ++ +A + I + + D + E Sbjct: 188 MFDTKLAGYLAQPDFHADSLKQAAEHFLD--------IHFTETEQPSQGTLDFDDDQVEE 239 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVA 202 D+ + R + L P+ + ++ W + + G VD Sbjct: 240 DPNEHR---LRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSV 296 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----T 258 ++ E + QE+ G + + ++L+ LF + GL T++ T Sbjct: 297 RLVSMRDQFAAE-ARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTT 355 Query: 259 CQRVLSSN-------KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQF 310 L ++ + +R ++ + + TL++A N SD R+ T + Sbjct: 356 NAAALQDLYVKSVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFEQ 413 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 A+ TGR S QN+P + + E +R + Sbjct: 414 TVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRGVFVP 447 Query: 371 SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 EG + L+ D + +E R++A ++ ++ ++AF +G D + + + + Q+T DQR Sbjct: 448 GEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQR 507 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 + K M L Y Sbjct: 508 SHVKAMSYGLAY-----GLSTYGL------------------------------------ 526 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 A + E +K + +V + L + Sbjct: 527 ---AQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANARE------------------- 564 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 GR + + + + +Q + DI Sbjct: 565 -------KGYTETIFGRRRYFPALHSTNRVAREAAERA---------ALNAPIQGSAADI 608 Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLP 662 + M+ A I+L +HDE+V E + + L M A +P Sbjct: 609 MKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VP 666 Query: 663 LKAEGYESKRYR 674 L ++ Sbjct: 667 LDVSCGIGSDWQ 678 >gi|213692610|ref|YP_002323196.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524071|gb|ACJ52818.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 955 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 95/661 (14%), Positives = 191/661 (28%), Gaps = 153/661 (23%) Query: 44 LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 + + L++ + H E L +LD+ + T + Sbjct: 414 IVPLPITDTLRAQFARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-PMFDTKLAGYLT 471 Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 ++ +A + I + + D + E Sbjct: 472 QPDFHADSLKQAAEHFLD--------IHFTETEQPSQGTLDFDDDQVEEDPNEHR---LR 520 Query: 164 DVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVALAHTLNQIVDV 213 D+ + R + L P+ + ++ W + + G VD ++ Sbjct: 521 DLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAA 580 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN--- 266 E + QE+ G + + ++L+ LF + GL T++ T L Sbjct: 581 E-ARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVK 639 Query: 267 ----KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSG 321 ++ + +R ++ + + TL++A N SD R+ T + A+ TGR S Sbjct: 640 SVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFEQTVAA-TGRLSS 696 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVAD 380 QN+P + + E +R + EG + L+ D Sbjct: 697 VDPNLQNIPNRNAAGRE-------------------------IRGVFVPGEGYEALMSCD 731 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + +E R++A ++G++ ++AF +G D + + + + Q+T DQR+ K M L Sbjct: 732 YSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLA 791 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y A + Sbjct: 792 Y-----GLSTYGL---------------------------------------AQQLKIAP 807 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 E +K + +V + L + Sbjct: 808 REAEALKNRYFDTFGKVHDYLESLVANARE--------------------------KGYT 841 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-- 618 GR + + + + +Q + DI+ M+ A Sbjct: 842 ETIFGRRRYFPALHSTNRVAREAAERA---------ALNAPIQGSAADIMKIAMIRAEQT 892 Query: 619 ----KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 I+L +HDE+V E + + L M A +PL + Sbjct: 893 LAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCGIGSDW 950 Query: 674 R 674 + Sbjct: 951 Q 951 >gi|325662094|ref|ZP_08150713.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471757|gb|EGC74976.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium 4_1_37FAA] Length = 341 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 91/321 (28%), Positives = 147/321 (45%), Gaps = 32/321 (9%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + + ID ET S +D+ K G+ KYAE + ++LFA D V ++D V+P + Sbjct: 4 IKEMSIDLETYSDVDIKKSGVYKYAESENFEILLFAVSIDGGDVIVYDLACGDVLPDEIL 63 Query: 59 EALENTDVTIVAHNSYFERTVLKACF------------------NLDIPIHRWICTLVLA 100 +A+ + DV A N+ FER L + W CT++ + Sbjct: 64 DAIVSDDVIKWAFNASFERICLSYWMKRNYPDRFCSYSIPEDTVGNYLDPASWRCTMIWS 123 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRL 156 GLP +L+ VG L L QKM+EGK+LI F CK RN P H E W + Sbjct: 124 AYMGLPLSLEGVGAVLGLKDQKMKEGKDLIRYFCVPCKPTKSNGGRTRNFPMHAPEKWTV 183 Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 F Y K DV V I ++L P+ E + LDQ INDRG VD+ + + Sbjct: 184 FKSYNKRDVEVEIGIKEKLHKFPVPDFVWEEYLLDQEINDRGILVDLQMVENAIAFDERS 243 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 + + E+ LT + + + ++K+WL + G+ +E L + ++ + Sbjct: 244 KATITDEMLGLTD--IDNPNSVSQMKSWLSDQ-GIEVESLGKKVVAEMIKDAPED---LA 297 Query: 275 QVFNNRMRASRSAVLKLNTLV 295 QV + R + ++S+V ++ + Sbjct: 298 QVLSLRQQLAKSSVNRVGEIP 318 >gi|224011788|ref|XP_002294547.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana CCMP1335] gi|220969567|gb|EED87907.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana CCMP1335] Length = 745 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 120/790 (15%), Positives = 198/790 (25%), Gaps = 217/790 (27%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFA--------FGFDDHPVE--LWD-CVHDPVM 53 D E IDL + G V + +G D P D + Sbjct: 35 ACDTE-VMDIDLKEVGP---VGHGYVTCISVYSGEDFDYGLGDGPGTMLWIDNLDDAKDL 90 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP---SAL 109 Q K LE+ V V HN F+R VL FN I + + T+ +AR + +L Sbjct: 91 LQEFKPWLEDAKVMKVWHNYGFDRHVL---FNEGINVLGFGGDTMHMARLSDTSRMKYSL 147 Query: 110 KAVGEAL----KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 +++ E L K+ +++ L G + + + +Y D Sbjct: 148 ESLTEDLLKQRKVPMKEIFGVPRLRKDGTDGAIVDIPPVEVMQRDPKFRESWIKYSAMDA 207 Query: 166 TVTREIFKRLEPLSS----------------KEQELWYLDQTINDRGYCVDVALAHTLNQ 209 T +++ L+ + L + RG V + Sbjct: 208 KSTYNLYQHLKKELLKVGWIRQMNMMQYYQLHMRPFGELLTDLERRGMLVAKDYLADVEV 267 Query: 210 IVDVERTKLDQELESLT------YGLVSSSRCLEKLKTWLF------------------- 244 +R + GL + +L T+LF Sbjct: 268 QARKDREGHVEAFRQWAFKQLGPDGLAMNLASSVQLTTFLFGGAENAKTKEPTEKVRVFK 327 Query: 245 ----------------------------LETGLHLEDLT----ETTCQRVLSSNKKLTPQ 272 G+ + T + VL Sbjct: 328 TAREDIPDDAMEAYPKNEQEPKYVDVTVRSLGMTPDKFTVSGAPSATADVLRKLAGDPFA 387 Query: 273 AIQVFNNRMR-----------------------ASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 + L +L + R+ +L Sbjct: 388 DPPKYGAAYEFFGGGEAGHEACVAFFSLTAIGSIDTMIANFLTSLQTLADDQNRVHCSLN 447 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 + TGR S QN P L+ +R + Sbjct: 448 IN--TETGRLSSRKPNMQNQP-------------------------ALEKDKYKIRQAFM 480 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 AS G L+VAD +E R+LA M + AFE G D + T F Q Sbjct: 481 ASPGNNLIVADYGQLELRLLASMTDCTSMIDAFEAGGDFHSRTALGMFK-------YIQD 533 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 A+ L + L ++ NF + Sbjct: 534 AVANGDVL-------------LEWDYSKGEPPKPMLKDQYASERRKAKTLNFSIAYGKTA 580 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + + E + +AW V + +A Sbjct: 581 HGLSQDWGVSLKEAEEMLRAWYDSRPEVEKWQQNTKKAARN------------------- 621 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 I GR + R +Q + D+ Sbjct: 622 -------YGITRTLMGRYRHLPHAMEGNN--RKRLGHAERASINTP------IQGGAADV 666 Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKG-- 660 M+ K G+ +++ VHDE++ E P +T E + M W G Sbjct: 667 AMMAMIKINDSLLLKKLGWILLMQVHDEVILEGPEETAEEAFEEVVKCMQEP--WVLGLD 724 Query: 661 ---LPLKAEG 667 +PL +G Sbjct: 725 KTKVPLLVDG 734 >gi|320458761|dbj|BAJ69382.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 950 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 95/661 (14%), Positives = 191/661 (28%), Gaps = 153/661 (23%) Query: 44 LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 + + L++ + H E L +LD+ + T + Sbjct: 409 IVPLPITDTLRAQFARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-PMFDTKLAGYLT 466 Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 ++ +A + I + + D + E Sbjct: 467 QPDFHADSLKQAAEHFLD--------IHFTETEQPSQGTLDFDDDQVEEDPNEHR---LR 515 Query: 164 DVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVALAHTLNQIVDV 213 D+ + R + L P+ + ++ W + + G VD ++ Sbjct: 516 DLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAA 575 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN--- 266 E + QE+ G + + ++L+ LF + GL T++ T L Sbjct: 576 E-ARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVK 634 Query: 267 ----KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSG 321 ++ + +R ++ + + TL++A N SD R+ T + A+ TGR S Sbjct: 635 SVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFEQTVAA-TGRLSS 691 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVAD 380 QN+P + + E +R + EG + L+ D Sbjct: 692 VDPNLQNIPNRNAAGRE-------------------------IRGVFVPGEGYEALMSCD 726 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + +E R++A ++G++ ++AF +G D + + + + Q+T DQR+ K M L Sbjct: 727 YSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLA 786 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y A + Sbjct: 787 Y-----GLSTYGL---------------------------------------AQQLKIAP 802 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 E +K + +V + L + Sbjct: 803 REAEALKNRYFDTFGKVHDYLESLVANARE--------------------------KGYT 836 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-- 618 GR + + + + +Q + DI+ M+ A Sbjct: 837 ETIFGRRRYFPALHSTNRVAREAAER---------AALNAPIQGSAADIMKIAMIRAEQT 887 Query: 619 ----KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 I+L +HDE+V E + + L M A +PL + Sbjct: 888 LAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCGIGSDW 945 Query: 674 R 674 + Sbjct: 946 Q 946 >gi|148380963|ref|YP_001255504.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502] gi|153933368|ref|YP_001385333.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397] gi|153935166|ref|YP_001388741.1| DNA polymerase I [Clostridium botulinum A str. Hall] gi|148290447|emb|CAL84575.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502] gi|152929412|gb|ABS34912.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397] gi|152931080|gb|ABS36579.1| DNA polymerase I [Clostridium botulinum A str. Hall] Length = 875 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 100/674 (14%), Positives = 203/674 (30%), Gaps = 141/674 (20%) Query: 17 TKCGICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENT 64 + + Y E ++LF+ + V D +V KE E+ Sbjct: 322 KENDLYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLIKNTKEQFIEVCKEIFESK 381 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 ++ + +++ RT+L+ ++ + + A V + ++SS E Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIK-FDINLAAYLIDP------VRKEYEISSLASE 433 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 + I R + + + E + + ++ EQ Sbjct: 434 YLFKNINREDEFLKIKEVNI------MPNLYKVLEEKIKEQDMEELLY-------KVEQP 480 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + G+ VD + L + E E+ S++ + ++L LF Sbjct: 481 LTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE-EEFNINSPKQLGKILF 539 Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + L + T+ +T VL + P ++ R ++ + L A++ D Sbjct: 540 EKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQ-LTKIYSTYIEGLKAAIDED 598 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 G++ + TGR S QN+P E Sbjct: 599 GKIHSNFNQ-TVTATGRLSSTEPNLQNIPIKYEMGRE----------------------- 634 Query: 362 DCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R I + G ++ AD + IE RVLA ++ ++ + AF +D++ T + F V Sbjct: 635 --IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVP 692 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 +VT R K + + Y G + + LN+ ++ E + + + Sbjct: 693 IEEVTPLMRGNAKAVNFGIVYGIGDFSLSQ-----DLNITRKEAKQYIDAYLERYPNVKL 747 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + + E E + R K + + V + + G A Sbjct: 748 YLENIVEEAIEKGYVSTILNR--RRYIKEVKSSNKIVKA---AGERLAMNSPIQGSAADI 802 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 K V + R L + ++ Sbjct: 803 IKLAMVNVH----------------RKLKEDNFKSS------------------------ 822 Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVH-DEIVCETPDTDEFNASMLYHLMTSNPSWAK 659 I+ + ++L VH DE+ E +++ M Sbjct: 823 --------II----LQVHDE---LILNVHKDEL--------EKIKALVKKEMEQVLELKV 859 Query: 660 GLPLKAEGYESKRY 673 G L + + Sbjct: 860 G--LDVDINIGNNW 871 >gi|115252786|emb|CAK98222.1| probable dna polymeraseIprotein [Spiroplasma citri] Length = 869 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 82/663 (12%), Positives = 189/663 (28%), Gaps = 144/663 (21%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 +I F + V +D +H ++ + L + + +++ L N+ + Sbjct: 329 EIIGFGI-VNSKGVFYFDYIHAKH-DKLWHQFLNDNKYQKLTYHAKSLIVALAR-DNIFV 385 Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 + ++ + ++ + L +K L F G+ + P Sbjct: 386 QNIEY-DMMLAGYVYNSNAK-NSLDTYINLFEKKQI----LTDEFFYGK----GVKKQIP 435 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYC 198 F + ++ ++ L Q + + + G Sbjct: 436 ADVIKLGHFI---GEKASYIHKLRPKIIELLKTNQQYDLYHNIELPIAFALARMEINGVK 492 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 VD T ++ +L+ E+ + + +++ LF L +T Sbjct: 493 VDQYELTTQTLRIEKIVQELNNEINDI-AQKEINPNSPKQISELLFQNFSLPDRKKG-ST 550 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 Q L K ++ + R + + L + + + +DG++ + + TGR Sbjct: 551 AQETLEEIKNNHVIIPKILDYR-KYQKLYSTYLKGMEKYIFADGKVHTIYKQ-TLTNTGR 608 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI-ASEGKKLV 377 S QN+ I VR + +S L+ Sbjct: 609 LSSVEPNMQNISIR-------------------------DHIQKEVRKIFVVSSPDNILL 643 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 D + IE R+LA M+ +Q + AF ED++ T + FN++ ++T + R K + Sbjct: 644 SCDYSQIELRILAHMSKDQDLIAAFNNNEDIHTNTAMKIFNLSKDEITPNIRRSAKAVNF 703 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 G++ A + Sbjct: 704 G--------------IIYGISDFGL------------------------------ATDLN 719 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + + Q+ + + + E +NG Sbjct: 720 ISVAKAKAIINNYYQQFPTIKAF---IDKQVEFCKQNGYVTTIFN--------------- 761 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R ++ + +++ +Q + DI+ + N Sbjct: 762 --------RKRYVSEINDRNYMQREFGKRI---------AMNMPIQGSAADIIKIALKNI 804 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYES 670 + I+ +HDE++ E P + + + M + + L + Sbjct: 805 DQEFLKLNLKAKIIAQIHDELIFEIPQVELIQVQKIVKILMEDSTK--LDVKLIVDMKTG 862 Query: 671 KRY 673 + Sbjct: 863 LSW 865 >gi|210631309|ref|ZP_03296852.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279] gi|210160076|gb|EEA91047.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279] Length = 932 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 89/602 (14%), Positives = 168/602 (27%), Gaps = 135/602 (22%) Query: 86 LDIPIHRWICTLVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 LD R T+V A + + E ++ G++ + Sbjct: 448 LDADPARLFDTVVAAYLLDSVRSDFADAHLAETYLHAALPAAAGED--GAPADAPSAAAR 505 Query: 143 YDRNKPNHREAWRLFGE-YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 RE E D+ + E L + ++ G VD Sbjct: 506 SAWLARILREPLAAALEAQGAEDI------------FTKIEMPLVRVLASMERAGMYVDP 553 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----- 256 A ++ + + +L + L G + +L LF + GL L + Sbjct: 554 ARLAAQSEELSGQIAELSDRIRELAGGEEFNLSSPMQLSRVLFDKLGLPTAGLKKTQRGY 613 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T +VL K + R ++ L+TL +DGR+ T + Sbjct: 614 YSTNAKVLEDLAKDYEIVRLILEYR-ERTKIKSTYLDTLGALRETDGRVHTTYNQ-TITA 671 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P S + V+ EG Sbjct: 672 TGRLSSSNPNLQNIPTRSE-------------------------LGHAVKKAFSVEEGSV 706 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 V D + IE R+LA ++G++ + AF GED + T AR F V +VT R+ K + Sbjct: 707 FVAIDYSQIELRLLAHLSGDEHLVGAFNEGEDFHAETAARVFGVPVEEVTPQLRSRAKAV 766 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + Y Q + L++ ++ + + + Sbjct: 767 NFGIVYGQ-----QAYGLSQALDIPMAEAREMIDAYFRAYPGVRTYLDETVAFAKQTGYA 821 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + +RR +P + + + Sbjct: 822 ETMY-----------------------------------------GRRRPIPELRVPAQR 840 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTT--TRQLTREYTYGGKLTENI-VQAVSRDILAE 612 R+ +N ++ E + + + ++ Sbjct: 841 MF-----------------GERTAMNHPMQGSAADIIKIAMVRVAERLRTEGFAAKMI-- 881 Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESK 671 + E+ E P + +M+ M +PL A+ + Sbjct: 882 --LQVHD-----------ELDFECPVGEVDALVAMVREEMEGVAQ--LRVPLIADASVGE 926 Query: 672 RY 673 + Sbjct: 927 TW 928 >gi|317133543|ref|YP_004092857.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3] gi|315471522|gb|ADU28126.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3] Length = 870 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 96/618 (15%), Positives = 185/618 (29%), Gaps = 133/618 (21%) Query: 65 DVTIVAHNSYFERTVLKACF--NLDIPIHRWICTLVLARSNGLPSALKA---VGEALKLS 119 +T H+S V A + T++L ++ A + E + Sbjct: 372 SITKRTHDSK---PVYAAALRQGFTVSDAEPDDTMLLGYLLNPLASSYAPARLCEEYTVF 428 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 E + G L R R E + ++++ Sbjct: 429 PPATEN----VPDGFSGCVDTALAVRAL--APVLLRKLTENGQE------KLYR------ 470 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G+ VD A + + + ++QE+ + ++L Sbjct: 471 EVELPLARVLAQMEHAGFLVDAAGIAAYGETLGKKLAAIEQEIVDAVGYP-FNLNSPKQL 529 Query: 240 KTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF++ GL T+ +T VL + P + R + S+ + L++ Sbjct: 530 GEALFVKLGLPHGKKTKTGWSTSADVLDKLRGAHPAIDALLGYR-KLSKLKSTYTDGLLK 588 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + DGR+ + +RTGR S QN+P S EL Sbjct: 589 VIAPDGRIHSSFNQ-VETRTGRISSTEPNLQNIPVRSAEGREL----------------- 630 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 R +A G LV AD + IE R+LA +A + + AF ED++ T ++ Sbjct: 631 --------RRFFVARPGWVLVDADYSQIELRILAHIADDAAMIAAFNNHEDIHTITASQV 682 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F + P VT R+ K + + Y GA + + + ++ +++ Sbjct: 683 FGMPPEYVTPIMRSRAKAVNFGIVYGIGAFSLSQ-----DIGVSVKEADSYIKGYLQKFS 737 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 ++ + E + G RV + + + T G Sbjct: 738 GVRDYMERVIREAHEKGYVETLFGR--RRVLPELLSSNHNMRAFG---ERVARNTPIQGT 792 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 A K + +L RE Sbjct: 793 AADIIKI-----------------------------------AMVRVRDRLERE------ 811 Query: 597 LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNP 655 +Q + ++ + ++ E P+ + A + M Sbjct: 812 ----QMQ-SA--LI----LQVHDE-----------LIVEAPEDEAARAGQILEEEMEGAA 849 Query: 656 SWAKGLPLKAEGYESKRY 673 S + L+A+ + + Sbjct: 850 S--LRVRLEADVHTGHTW 865 >gi|302871762|ref|YP_003840398.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47] gi|302574621|gb|ADL42412.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47] Length = 850 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 80/622 (12%), Positives = 175/622 (28%), Gaps = 130/622 (20%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKA--CFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++E L++ V IV ++ + I ++ + + Sbjct: 350 VEEILKSESVKIV-----YDLKNIFHELYLENTDNIRNCEDVMIASYVLDSTRS------ 398 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + +L + + +A K + + + + D+ + ++ Sbjct: 399 SYELETLFISYLNTDLAAVKKDKKVTSVILLKRLWDELS-------SLIDLNSCQFVYT- 450 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + E+ L + + G+ VD + ++ + L++++ + + Sbjct: 451 -----NIERPLIPILYEMEKAGFKVDRDALLQYTKEIESKILNLEKQIYQIAG-EWFNIN 504 Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF + L + T+ +T VL + + RM ++ Sbjct: 505 SPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMY-TKILTTYC 563 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++A+N T + TGR + QN+P Sbjct: 564 QGLLQAINPSSGRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGR-------------- 609 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R I EG L+ AD + IE R+LA ++ ++ + AF+ D++ Sbjct: 610 -----------LIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNVDIHSQ 658 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT + R+ K + + Y + ++ N Sbjct: 659 TAAEVFGVDIDDVTPEMRSQAKAVNFGIVYGIS-----DYGLARDIKISRKEAAEFINRY 713 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E + + + + + ++ R K + + + + Sbjct: 714 FERYPKVKEYLDNIVKFARDNGYVLTLFNR--RRYVKDIKSANRNARNY---AERIAMNS 768 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 G A K + + Y+ + N + Sbjct: 769 PIQGSAADIMKLAMIKV---------------------YQKLKENNLKSKIILQVHDELL 807 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM 651 + DI+ EIV M Sbjct: 808 IEAPYEEK--------DIVK-------------------EIV--------------KREM 826 Query: 652 TSNPSWAKGLPLKAEGYESKRY 673 + A +PL E E + Sbjct: 827 ENAV--ALKVPLVVEVKEGLNW 846 >gi|153938977|ref|YP_001392289.1| DNA polymerase I [Clostridium botulinum F str. Langeland] gi|152934873|gb|ABS40371.1| DNA polymerase I [Clostridium botulinum F str. Langeland] gi|295320282|gb|ADG00660.1| DNA polymerase I [Clostridium botulinum F str. 230613] Length = 875 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 99/674 (14%), Positives = 204/674 (30%), Gaps = 141/674 (20%) Query: 17 TKCGICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENT 64 + + Y E ++LF+ + V D +V +E E+ Sbjct: 322 KENDLYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCREMFESK 381 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 ++ + +++ RT+L+ ++ + + A V + ++SS E Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIK-FDINLAAYLINP------VRKEYEISSLASE 433 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 + I R + + + E + + ++ EQ Sbjct: 434 YLFKNINREDEFLKIKEVNI------MPNLYKVLEEKIKEQDMEELLY-------KVEQP 480 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + G+ VD + L + E E+ S++ + ++L LF Sbjct: 481 LTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE-EEFNINSPKQLGKILF 539 Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + L + T+ +T VL + P ++ R ++ + L A++ D Sbjct: 540 EKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQ-LTKIYSTYIEGLKAAIDED 598 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 G++ + TGR S QN+P E Sbjct: 599 GKIHSNFNQ-TVTATGRLSSTEPNLQNIPIKYEMGRE----------------------- 634 Query: 362 DCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R I + G ++ AD + IE RVLA ++ ++ + AF +D++ T + F V Sbjct: 635 --IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVP 692 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 +VT R+ K + + Y G + + LN+ ++ E + + + Sbjct: 693 IEEVTPLMRSNAKAVNFGIVYGIGDFSLSQ-----DLNITRKEAKQYIDAYLERYPNVKL 747 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + + E E + R K + + V + + G A Sbjct: 748 YLENIVEEAVEKGYVSTILNR--RRYIKEVKSSNKIVKA---AGERLAMNSPIQGSAADI 802 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 K V + R L + ++ Sbjct: 803 IKLAMVNVH----------------RKLKEDNFKSS------------------------ 822 Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVH-DEIVCETPDTDEFNASMLYHLMTSNPSWAK 659 I+ + ++L VH DE+ E +++ M Sbjct: 823 --------II----LQVHDE---LILNVHKDEL--------EKIKALVKKEMEQVLELKV 859 Query: 660 GLPLKAEGYESKRY 673 G L + + Sbjct: 860 G--LDVDINIGNNW 871 >gi|251771629|gb|EES52205.1| DNA polymerase I [Leptospirillum ferrodiazotrophum] Length = 831 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 75/493 (15%), Positives = 150/493 (30%), Gaps = 123/493 (24%) Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 + + + G V + + ++ + L+ E+ S +++ L Sbjct: 435 PVARIIVGMEKAGIPVSLTRILEAKKTIEEKIAGLEAEIYREAGQT-FSILSPKQVGEVL 493 Query: 244 FLETGLHLEDLT------ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 + GL T +T + L L P + + R + L + E Sbjct: 494 YGRLGLPPPRRTGKGSGAPSTDEEALEGLAALHPLPKLILSFRQ-LRKFLSTYLLPMEEG 552 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 SDGRL G A+ TGR S QN+P + Sbjct: 553 RGSDGRLHGQFNQTVAA-TGRLSSSRPNLQNIPARTE----------------------- 588 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 + VR C +A +G L+ AD + IE R+LA +G+ + +AF GED++ T A F Sbjct: 589 --LGLLVRRCFVAPQGGCLLSADYSQIELRLLAHFSGDPFLREAFSRGEDIHARTAALLF 646 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 T + R K + G++ Sbjct: 647 GEPV---TSESRRRAKTINF--------------GILYGMS------------------- 670 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 + + + + + + V + ++ + +T Sbjct: 671 -----------AYSLSQDLGVEPAEAQGIIDRYFSVVAGVGPYFEKIREEARRT------ 713 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 + GR ++ ++ R Sbjct: 714 --------------------GRIRTLLGRIRPIPEIRSDN---RNVREYGERMA------ 744 Query: 598 TENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-L 650 +++Q + D++ + M++ ++A ++L VHDE++ E + + S + Sbjct: 745 VNSVLQGSAADLVKKAMVDLSQAVASSGLKARLLLQVHDELLFEVSEDQAESLSAVVRKT 804 Query: 651 MTSNPSWAKGLPL 663 M + LP+ Sbjct: 805 MEGAIPLSVPLPV 817 >gi|168179504|ref|ZP_02614168.1| DNA polymerase I [Clostridium botulinum NCTC 2916] gi|182669730|gb|EDT81706.1| DNA polymerase I [Clostridium botulinum NCTC 2916] Length = 875 Score = 240 bits (612), Expect = 7e-61, Method: Composition-based stats. Identities = 100/674 (14%), Positives = 204/674 (30%), Gaps = 141/674 (20%) Query: 17 TKCGICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENT 64 + + Y E ++LF+ + V D +V KE E+ Sbjct: 322 KENDLYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCKEMFESK 381 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 ++ + +++ RT+L+ ++ + + A V + ++SS E Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIK-FDINLAAYLIDP------VRKEYEISSLASE 433 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 + I R + + + E + + ++ EQ Sbjct: 434 YLFKNINREDEFLKIKEVNI------MPNLYKVLEEKIKEQDMEELLY-------KVEQP 480 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + G+ VD + L + E E+ S++ + ++L LF Sbjct: 481 LTETLSAMETEGFKVDKDILLQLEKRFKGEIESTQLEIYSMSE-EEFNINSPKQLGKILF 539 Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + L + T+ +T VL + P ++ R ++ + L A++ D Sbjct: 540 EKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQ-LTKIYSTYIEGLKAAIDED 598 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 G++ + TGR S QN+P E Sbjct: 599 GKIHSNFNQ-TVTATGRLSSTEPNLQNIPIKYEMGRE----------------------- 634 Query: 362 DCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R I + G ++ AD + IE RVLA ++ ++ + AF +D++ T + F V Sbjct: 635 --IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVP 692 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 +VT R+ K + + Y G + + LN+ ++ E + + + Sbjct: 693 IEEVTPLMRSNAKAVNFGIVYGIGDFSLSQ-----DLNITRKEAKQYIDAYLERYPNVKL 747 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + + E E + R K + + V + + G A Sbjct: 748 YLENIVEEAVEKGYVSTILNR--RRYIKEVKSSNKIVKA---AGERLAMNSPIQGSAADI 802 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 K V + R L + ++ Sbjct: 803 IKLAMVNVH----------------RKLKEDNFKSS------------------------ 822 Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVH-DEIVCETPDTDEFNASMLYHLMTSNPSWAK 659 I+ + ++L VH DE+ E +++ M Sbjct: 823 --------II----LQVHDE---LILNVHKDEL--------EKIKALVKKEMEQVLELKV 859 Query: 660 GLPLKAEGYESKRY 673 G L + + Sbjct: 860 G--LDVDINIGNNW 871 >gi|262043421|ref|ZP_06016546.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039247|gb|EEW40393.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 328 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 130/331 (39%), Positives = 185/331 (55%), Gaps = 16/331 (4%) Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDLY 409 +Q+ S +R C++A GKKLVV+DL+ IE R+LAW+AGEQWKL AF DLY Sbjct: 3 SVMQLASSALRGCIMAPAGKKLVVSDLSNIEGRMLAWLAGEQWKLDAFRQYDEGTGPDLY 62 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 YAR+FN++ VTK QR IGKVMEL LG+ GG AF A GL+L A N Sbjct: 63 KLAYARAFNISHEDVTKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLEELATAALPN 122 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + +A+ + + + + + AC+ +K+ WR+ H + W +L + Sbjct: 123 IPRDVQREAKGWYDESVKRKATYGLSERVFI-ACDSLKRLWRRAHPETCDFWYQLERTVR 181 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTT 584 I + + +++D L + LPSGR+L Y N +Y+ N+ + Sbjct: 182 TAIATPAKTL-----YCGYLKVRRDGAWLRIQLPSGRALCYPSPTIEKGNITYMGINSYS 236 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644 R+ R TYGGKL EN+ QA +RD+LA M AGY IVLTVHDE++CE PDTD++ Sbjct: 237 RKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIENAGYSIVLTVHDEVICEAPDTDDYTD 296 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + L L+++NP WA +PL A G+E+ YRK Sbjct: 297 AALSSLLSTNPEWAPDIPLNAGGFEAYHYRK 327 >gi|222529430|ref|YP_002573312.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725] gi|226693519|sp|Q59156|DPO1_ANATD RecName: Full=DNA polymerase I; Short=Pol I gi|222456277|gb|ACM60539.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725] Length = 850 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 80/622 (12%), Positives = 176/622 (28%), Gaps = 130/622 (20%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGE 114 ++E L++ V ++ + NL+ I ++ + + Sbjct: 350 IEEILKSDTVK-----IMYDLKNIFHQLNLEDTNNIKNCEDVMIASYVLDSTRS------ 398 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + +L + + I K + + + D+ + ++ Sbjct: 399 SYELETLFVSYLNTDIEAVKKDKKIVSVVLLKRLWDELLR-------LIDLNSCQFLY-- 449 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + E+ L + + G+ VD + ++ + KL+ ++ + + Sbjct: 450 ----ENIERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIAG-EWFNIN 504 Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF + L + T+ +T VL + + RM ++ Sbjct: 505 SPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMY-TKILTTYC 563 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++A+N T + TGR + QN+P + Sbjct: 564 QGLLQAINPSSGRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGK-------------- 609 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R + G L+ AD + IE R+LA ++ ++ + AF+ D++ Sbjct: 610 -----------LIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQ 658 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V A VT + R+ K + + Y + ++ N Sbjct: 659 TAAEVFGVDIADVTPEMRSQAKAVNFGIVYGIS-----DYGLARDIKISRKEAAEFINKY 713 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E + + + + ++ +R K + + + + + Sbjct: 714 FERYPKVKEYLDNTVKFARDNGFVLTLFNR--KRYIKDIKSTNRNLRGY---AERIAMNS 768 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 G A K + + Y+ + N + Sbjct: 769 PIQGSAADIMKLAMIKV---------------------YQKLKENNLKSKIILQVHDELL 807 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM 651 + DI+ EIV M Sbjct: 808 IEAPYEEK--------DIVK-------------------EIV--------------KREM 826 Query: 652 TSNPSWAKGLPLKAEGYESKRY 673 + A +PL E E + Sbjct: 827 ENAV--ALKVPLVVEVKEGLNW 846 >gi|296453882|ref|YP_003661025.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301] gi|296183313|gb|ADH00195.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301] Length = 955 Score = 240 bits (611), Expect = 9e-61, Method: Composition-based stats. Identities = 96/673 (14%), Positives = 191/673 (28%), Gaps = 156/673 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A + + L L++ + H E L +LD+ + Sbjct: 404 IAVAT-ATSAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 460 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 T + ++ +A + E + Sbjct: 461 MFDTKLAGYLTQPDFHADSLKQAAEHFLD------------LHFTETEQPSQGTLDFDDD 508 Query: 153 AWRLF-GEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDV 201 E+ D+ + R + L P+ + ++ W + + G VD Sbjct: 509 QVEEDPNEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDS 568 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---- 257 ++ E + QE+ G + + ++L+ LF + GL T++ Sbjct: 569 VRLVSMRDQFAAE-ARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYT 627 Query: 258 TCQRVLSSN-------KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQ 309 T L ++ + +R ++ + + TL++A N SD R+ T + Sbjct: 628 TNAAALQDLYVKSVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFE 685 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 A+ TGR S QN+P + + E +R + Sbjct: 686 QTVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRGVFV 719 Query: 370 ASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 EG + L+ D + +E R++A ++G++ ++AF +G D + + + + Q+T DQ Sbjct: 720 PGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQ 779 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R+ K M L Y Sbjct: 780 RSHVKAMSYGLAY-----GLSTYGL----------------------------------- 799 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 A + E +K + +V + L + Sbjct: 800 ----AQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANARE------------------ 837 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR + + + + +Q + D Sbjct: 838 --------KGYTETIFGRRRYFPALHSTNRVAREAAERA---------ALNAPIQGSAAD 880 Query: 609 ILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGL 661 I+ M+ A I+L +HDE+V E + + L M A + Sbjct: 881 IMKIAMIRAEQTLAEAHVKSCIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--V 938 Query: 662 PLKAEGYESKRYR 674 PL ++ Sbjct: 939 PLDVSCGIGSDWQ 951 >gi|108805947|ref|YP_645884.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941] gi|108767190|gb|ABG06072.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941] Length = 582 Score = 240 bits (611), Expect = 9e-61, Method: Composition-based stats. Identities = 119/702 (16%), Positives = 205/702 (29%), Gaps = 183/702 (26%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65 +D E L D + L + D + L+EALE Sbjct: 32 LDIEATGLSPL----------DARMRLLQLAA-GGETFVVDVFEVKDL-SPLREALE-GG 78 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-----LPSALKAVGEALKLSS 120 V HN+ ++ + L A + + T++ A+ +L+AV Sbjct: 79 PLKVLHNAKYDYSFLLAQHGIRLSP--LFDTMLAAQLLDGGEQGPSYSLEAVAGRYL--- 133 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 + R + +E R EY D + + +RL+ L Sbjct: 134 ----------------QETVDKTARREDWSKELSREQLEYAARDAAILLPLHERLQELLE 177 Query: 181 KE---------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV- 230 +E + G +DV L ++V R + + LES Sbjct: 178 REGLGPVSRIEFGAVPAIAEMELAGIRLDVRRWRELERVVRRRRDEAARRLESHFPQPEG 237 Query: 231 ----------SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 + +++ F G+ L D T P A + R Sbjct: 238 VLPLEGLGPRLNLNSPQQIME-AFRSIGIELPDTRMWTL------LTVDHPAARDLLEYR 290 Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + L T ++ GR+ + TGR + Q +P Sbjct: 291 -ELQKKLGTYLETYEGFVHPKTGRIHASFLQCRVP-TGRLACTNPNVQQIPHEDE----- 343 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 R C +A EG LV+AD + IE R+LA ++G+ + Sbjct: 344 ------------------------FRRCFVAGEGNVLVIADYSQIELRILAEVSGDPGFV 379 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GEDL+ T A F V +VTK+QR+ K + G Sbjct: 380 EAFRRGEDLHRVTAATMFGVPKEEVTKEQRSAAKRINF--------------GLAYGRGP 425 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + A + T+ R+ + + RV Sbjct: 426 RSLAAQLGTDE------------------------------ERARRLIDEYFATYGRVQR 455 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 L++ + ++ G L SGR + S Sbjct: 456 Y---LNETANRALKEG-----------------------ALRTLSGRLRKFGRTRGLSSA 489 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYDIVLTVHDE-IVC 634 ++ + +Q S DI ++ ++ +HDE +V Sbjct: 490 ERGALKR---------EAMNYPIQGTSADIAKLALIFIHSELRDLDARLINCIHDEFVVE 540 Query: 635 ETPDTDEFNASMLYHLMTSNPS-WAKGLPLKAEGYESKRYRK 675 + E AS + M K +P++ E S+ +RK Sbjct: 541 CAEEQAEEAASRVRSAMVRAGERLLKRVPVEVEVAVSREWRK 582 >gi|242074498|ref|XP_002447185.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor] gi|241938368|gb|EES11513.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor] Length = 992 Score = 240 bits (611), Expect = 9e-61, Method: Composition-based stats. Identities = 100/769 (13%), Positives = 203/769 (26%), Gaps = 161/769 (20%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF---------GFDDHPVELWD--CVHDPVM 53 D E ID+ + V F+ F + +W P + Sbjct: 281 ACDTE--VDIDVKQETP---VGHGKVTCFSIYSGTKGAEADFGNGKTCIWVDVLDGGPDV 335 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------ 106 E++ + V HN F+ V++ I + + T+ LAR Sbjct: 336 LMEFAPFFEDSSIRKVWHNYSFDSHVIENY---GIKVAGFHADTMHLARLWDSSRRTDGG 392 Query: 107 SALKAVGEALKLSSQKMEE----GKELIA--RFCKGETHECLYDRNKPNHREAW------ 154 +L+ + ++ +E GK + K + + Sbjct: 393 YSLEGLTNDHRVMGVVSKELRKIGKRSMKTIFGRKKIKKDGSEGKITAIEPVEILQREDR 452 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSS--------------------KEQELWYLDQTIND 194 L+ Y D T ++++ L+ + + + Sbjct: 453 ELWICYSSLDSMSTLKLYESLKSKLERKPWTFDGCPRGSLYDFYEEYWRPFGAILVKMET 512 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF----- 244 G VD A + ++ +R + + + +++ F Sbjct: 513 AGMLVDRAYLSEIEKVAVAQRKLAADKFRNWASKYCPDAKYMNVNSDTQIRQLFFGGIEN 572 Query: 245 -LETG--LHLEDLTETTCQRVLSSNKKLTPQAIQV-FNNRMRASRSAVLKLNTLVEAMNS 300 + G L + S K P+ + N + ++ + + Sbjct: 573 ICKPGDFLPKSKAIKVPNDETAVSEGKKVPKYRTIELFNIVEDLKTDIFTASGWPSVSGD 632 Query: 301 DGRL---RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD----------------- 340 R + + ++ S +L S D Sbjct: 633 ALRNLAGKVPSDLVYSTDDECGSHSEISNCDLEDTSSYGTAYDAFGGGKEGKEACHAIAA 692 Query: 341 -------QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + + L+ +R +A+ G L+VAD +E R+LA +A Sbjct: 693 LCEICSIDSLISNFILPLQNQPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLA 752 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + L AF G D + T + V ++ K + Sbjct: 753 DCKSMLDAFRAGGDFHSRTAMNMYPHIREAVDEE------------------KVILEWHP 794 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G L A NF + A + + K W Sbjct: 795 QPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPHGLARDWKVSVKEAKDTLKLWYSD 854 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 V + Q + E GRS + ++ Sbjct: 855 RKEVLAWQMKQKQLAHEKSEVY--------------------------TLLGRSRRFPNM 888 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627 + S + R VQ + D+ M+ + G+ ++L Sbjct: 889 AHATSGQRGH---IERAAINAP------VQGSAADVAMCAMLEIDRNTRLKELGWTLLLQ 939 Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673 VHDE++ E P ++ E S++ M+ + + L + ++ + Sbjct: 940 VHDEVILEGPSESAELAKSIVVECMSKPFYGTNILKVDLAVDAKCAQNW 988 >gi|322807338|emb|CBZ04912.1| DNA polymerase I [Clostridium botulinum H04402 065] Length = 875 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 98/676 (14%), Positives = 198/676 (29%), Gaps = 145/676 (21%) Query: 17 TKCGICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENT 64 + + Y E ++LF+ + V D +V KE E+ Sbjct: 322 KENDLYLYFELEDIVLFSKSRVKTLYANFKDEVYKIDFEMLLNNTKEQFIEVCKEIFESK 381 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 ++ + +++ RT+L+ ++ + A +K Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIE-FDINLAAYLIDP--------------VRKEY 425 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFG--EYCKGDVTVTREIFKRLEPLSSKE 182 E L + + + L+ E + + ++ E Sbjct: 426 EISSLASEYLFKNINREDEFLRIKEVNIMPNLYKVLEEKIKEQDMEELLY-------KVE 478 Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 Q L + G+ VD + L + E E+ S++ + ++L Sbjct: 479 QPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE-EEFNINSPKQLGKI 537 Query: 243 LFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF + L + T+ +T VL + P ++ R ++ + L A++ Sbjct: 538 LFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQ-LTKIYSTYIEGLKAAID 596 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 DG++ + TGR S QN+P E Sbjct: 597 EDGKIHSNFNQ-TVTATGRLSSTEPNLQNIPIKYEMGRE--------------------- 634 Query: 360 ISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R I + G ++ AD + IE RVLA ++ ++ + AF +D++ T + F Sbjct: 635 ----IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFK 690 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 V +VT R K + + Y G + + LN+ ++ E + + Sbjct: 691 VPIEEVTPLMRGNAKAVNFGIVYGIGDFSLSQ-----DLNITRKEAKQYIDAYLERYPNV 745 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 + + + E E + R K + + V + + G A Sbjct: 746 KLYLENIVEEAIEKGYVSTILNR--RRYIKEVKSSNKIVKA---AGERLAMNSPIQGSAA 800 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 K V + R L + ++ Sbjct: 801 DIIKLAMVNVH----------------RKLKEDNFKSS---------------------- 822 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVH-DEIVCETPDTDEFNASMLYHLMTSNPSW 657 I+ + ++L VH DE+ E +++ M Sbjct: 823 ----------II----LQVHDE---LILNVHKDEL--------EKIKALVKKEMEQVLEL 857 Query: 658 AKGLPLKAEGYESKRY 673 G L + + Sbjct: 858 KVG--LDVDINIGNNW 871 >gi|168212970|ref|ZP_02638595.1| DNA polymerase I [Clostridium perfringens CPE str. F4969] gi|170715581|gb|EDT27763.1| DNA polymerase I [Clostridium perfringens CPE str. F4969] Length = 866 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 96/644 (14%), Positives = 179/644 (27%), Gaps = 130/644 (20%) Query: 39 DHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 D L + V + + KE EN D+ ++ T LK +D Sbjct: 344 DEKNYLINFKELVKEEENIKSFKEFFENEDILKNGYSIKNALTALKK-LGIDFNGLA-FD 401 Query: 96 TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 + A GE LS K + + + + + + Sbjct: 402 CELAAYLIDSSK-----GEYTLLSLINNYLSKFPNVKDGEEDLVGISFMKELTLVLKKKI 456 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 + + + + + ++ G+ V+ + L+ E Sbjct: 457 EEEKMERLMYDIELPLET--------------VLSSMESIGFKVNKDILDELSIKFKREL 502 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272 + +E+ L + ++L LF + L + T+ +T VL K P Sbjct: 503 EETQKEIFEL-ADEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPI 561 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 ++ + S+ + L +++DG + T + TGR S QN+P Sbjct: 562 IEKI-TYFRQLSKIYSTYVEGLKSVIDTDGSIHSTFNQTVTT-TGRLSSTEPNLQNIPIK 619 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391 E +R I EG L+ AD + IE RVLA Sbjct: 620 YEMGRE-------------------------IRKVFIPKKEGDLLISADYSQIELRVLAH 654 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++G++ + AF D++ T + F V +VT R+ K + + Y G + + Sbjct: 655 ISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ- 713 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 LN++ + E + + + + + R Sbjct: 714 ----DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNR--RRYIPEAN 767 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + V L + G A K V + K+ N L S L Sbjct: 768 ASNKIVKALG---ERLAMNAPIQGTAADIIKLAMVNVYNKLKELN-----LNSKLILQVH 819 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 D DI+ + Sbjct: 820 DELIINVVKGEL------------------------DIVKK------------------- 836 Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +L M + +PL + + + K Sbjct: 837 --------------LLKEEMENTIK--LSVPLDVDVNVGEDWYK 864 >gi|289522409|ref|ZP_06439263.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504245|gb|EFD25409.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 856 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 91/666 (13%), Positives = 186/666 (27%), Gaps = 152/666 (22%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73 + L G +Y + + + L E L ++ I Sbjct: 318 VALAFEGRGRYPQSFALSRCVLAEREGS-FYLLEPKGDDDYDALVEKLREKEILIWGF-- 374 Query: 74 YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133 + + + + + +EG I + Sbjct: 375 ---KEFTTSIKKAPFEKDKVWDGKIAYYLLHPDKS-------------SSKEGLAEIKKM 418 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193 K E EA LF Y K + + + + L + + Sbjct: 419 LKSEEGLDK---------EALSLFDLYGKISSEMDEALHGLMY---RIDIPLSVVLSRME 466 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 +G +D+ + Q ++ + ++ V + +++ LF GL + Sbjct: 467 RKGIRLDLDHLWKVKQELERTLDDVKASIDMAAGYKV-NLNSPKQVGWLLFDHLGLPVIK 525 Query: 254 LTE---TTCQRVLSSNKKLT---PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 T+ +T VL +L ++ + ++ + L++A++ T Sbjct: 526 KTKTGYSTDVTVLEELSRLDRPEALVAKLLLDHRELTKMLTGFVQPLIDAIDPKTGKVHT 585 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 ++ TGR S QNLP + ++ Sbjct: 586 TFEHTSTGTGRLSSRDPNLQNLP-------------------------AYGDWAMKLKEA 620 Query: 368 VIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 + + AD + IE RVLA ++G++ +AFE G D++ T A F V +V+ Sbjct: 621 FVPDRRDGIFIAADYSQIELRVLAHISGDKKLCEAFERGRDIHAETAAWIFGVDTEKVSP 680 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R + G+ A Sbjct: 681 ELRRMA--------------KMINFGLLYGMTPYGLASR--------------------- 705 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + + + +V + + +++E+ + G + Sbjct: 706 ---------LNIGREEAKTIIDRYFSAFPKVGDY---IEKSYEEARKRGYTLSL------ 747 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 GR + + +T L R +Q+ + Sbjct: 748 -----------------FGRRRPL---NEVTTVVGNSTAALKRVAINTP------IQSTA 781 Query: 607 RDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAK 659 DI M+ +A ++L +HD ++CE DE S +L M S Sbjct: 782 ADITKIAMIRLDEALQRENIDAALILQIHDSLICECSAKDEEVVSGILKESMESAVE--L 839 Query: 660 GLPLKA 665 +PL+ Sbjct: 840 SVPLEV 845 >gi|110799426|ref|YP_696673.1| DNA polymerase I [Clostridium perfringens ATCC 13124] gi|110674073|gb|ABG83060.1| DNA polymerase I [Clostridium perfringens ATCC 13124] Length = 866 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 96/644 (14%), Positives = 179/644 (27%), Gaps = 130/644 (20%) Query: 39 DHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 D L + V + + KE EN D+ ++ T LK +D Sbjct: 344 DEKNYLINFKELVKEEENIKSFKEFFENEDILKNGYSIKNALTALKK-LGIDFNGLA-FD 401 Query: 96 TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 + A GE LS K + + + + + + Sbjct: 402 CELAAYLIDSSK-----GEYTLLSLINNYLSKFPNVKEGEEDLVGISFMKELTLVLKKKI 456 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 + + + + + ++ G+ V+ + L+ E Sbjct: 457 EEEKMERLMYDIELPLET--------------VLSSMESIGFKVNKNILDELSIKFKREL 502 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272 + +E+ L + ++L LF + L + T+ +T VL K P Sbjct: 503 EETQKEIFEL-ADEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPI 561 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 ++ + S+ + L +++DG + T + TGR S QN+P Sbjct: 562 IEKI-TYFRQLSKIYSTYVEGLKSVIDTDGSIHSTFNQTVTT-TGRLSSTEPNLQNIPIK 619 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAW 391 E +R I EG L+ AD + IE RVLA Sbjct: 620 YEMGRE-------------------------IRKVFIPKEEGDLLISADYSQIELRVLAH 654 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++G++ + AF D++ T + F V +VT R+ K + + Y G + + Sbjct: 655 ISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ- 713 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 LN++ + E + + + + + R Sbjct: 714 ----DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNR--RRYIPEAN 767 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + V L + G A K V + K+ N L S L Sbjct: 768 SSNKIVKALG---ERLAMNAPIQGTAADIIKLAMVNVYNKLKELN-----LNSKLILQVH 819 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 D DI+ + Sbjct: 820 DELIINVVKGEL------------------------DIVKK------------------- 836 Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +L M + +PL + + + K Sbjct: 837 --------------LLKEEMENTIK--LSVPLDVDVNVGEDWYK 864 >gi|326333433|ref|ZP_08199676.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1] gi|325948738|gb|EGD40835.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1] Length = 895 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 107/657 (16%), Positives = 183/657 (27%), Gaps = 122/657 (18%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 V F F + P L L + + H++ + A Sbjct: 345 GRVDGFGFATQERAAYAGVEGFTPEDEAALAGWLADATKPKIMHDAKGPELAIDAH-GWS 403 Query: 88 IPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + T + A L + K E+ + F E D Sbjct: 404 LR-GLVTDTALSAYIVAPDQRSYDLADLTLRYLKRELKQEDDGGQESLFG---DDEVGGD 459 Query: 145 RNKPNHREAWRLFGEYCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 R + D V RL E L +L + G VD Sbjct: 460 GVATTSMLYARAVLDLAAELDSAVEAAGGDRLLS--EVELPLLHLLARMEKTGIAVDTEH 517 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQ 260 L + + + E + + + ++L+ LF E + T+T T Sbjct: 518 LDALERHFAGQMKQAADEAYGVIGKEI-NLGSPKQLQVVLFDELDMPKTKRTKTGWTTDA 576 Query: 261 RVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 L K P + + +R +R V + L++ + DGR+ T A+ TGR Sbjct: 577 DALQQLYVKTEHPFLLALLRHR-DVTRLRVT-IEGLLKTVQDDGRIHTTFNQTIAA-TGR 633 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LV 377 S QN+P + +R + G + L+ Sbjct: 634 LSSTEPNLQNIPVRTEEGRG-------------------------IRKGFVVGGGFESLM 668 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++ ++ ++AF +G D + T AR F V P V+ +QRA K M Sbjct: 669 TADYSQIEMRIMAHLSEDELLIEAFRSGRDFHSITAARVFGVDPDAVSVEQRAKIKAMNY 728 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 L Y + L + E + ++ R + E + Sbjct: 729 GLAYG-----LSAFGLSQQLGIEPSEARGLMEEYFETFGGIRDYLRSLVEEARRTGYTET 783 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 +RR +P + + Sbjct: 784 I-----------------------------------------MGRRRYLPDLLSDNRQRR 802 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R LN + K+ VQ + ++ Sbjct: 803 ET---------------AERMALNAPIQG---SAADLIKVAMLRVQ--AA-------IDE 835 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + L M S +PL + Sbjct: 836 ADLSSRMLLQVHDELVFEVAPGEREALESLVRAQMGSAAD--LNVPLDVSVGTGLSW 890 >gi|168215620|ref|ZP_02641245.1| DNA polymerase I [Clostridium perfringens NCTC 8239] gi|182382103|gb|EDT79582.1| DNA polymerase I [Clostridium perfringens NCTC 8239] Length = 866 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 96/644 (14%), Positives = 179/644 (27%), Gaps = 130/644 (20%) Query: 39 DHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 D L + V + + KE EN D+ ++ T LK +D Sbjct: 344 DEKNYLIKFKELVKEEDNIKAFKEFFENEDILKNGYSIKNALTALKK-LGIDFNGLA-FD 401 Query: 96 TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 + A GE LS K + + + + + + Sbjct: 402 CELAAYLIDSSK-----GEYTLLSLINNYLSKFPNVKEGEEDLVGISFMKELTLVLKKKI 456 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 + + + + + ++ G+ V+ + L+ E Sbjct: 457 EEEKMERLMYDIELPLET--------------VLSSMESIGFKVNKDILDELSIKFKREL 502 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272 + +E+ L + ++L LF + L + T+ +T VL K P Sbjct: 503 EETQKEIFEL-ADEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPI 561 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 ++ + S+ + L +++DG + T + TGR S QN+P Sbjct: 562 IEKI-TYFRQLSKIYSTYVEGLKSVIDTDGSIHSTFNQTVTT-TGRLSSTEPNLQNIPIK 619 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391 E +R I EG L+ AD + IE RVLA Sbjct: 620 YEMGRE-------------------------IRKVFIPKKEGDLLISADYSQIELRVLAH 654 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++G++ + AF D++ T + F V +VT R+ K + + Y G + + Sbjct: 655 ISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ- 713 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 LN++ + E + + + + + R Sbjct: 714 ----DLNISRREAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNR--RRYIPEAN 767 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + V L + G A K V + K+ N L S L Sbjct: 768 ASNKIVKALG---ERLAMNAPIQGTAADIIKLAMVNVYNKLKELN-----LNSKLILQVH 819 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 D DI+ + Sbjct: 820 DELIINVVKGEL------------------------DIVKK------------------- 836 Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +L M + +PL + + + K Sbjct: 837 --------------LLKEEMENTIK--LSVPLDVDVNVGEDWYK 864 >gi|167771297|ref|ZP_02443350.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM 17241] gi|167666548|gb|EDS10678.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM 17241] Length = 874 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 86/513 (16%), Positives = 160/513 (31%), Gaps = 109/513 (21%) Query: 167 VTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 +T EI + + E L + + G+ +D +D + + Sbjct: 461 LTDEIREHEQEKLLYEIEMPLARVLAGMECEGFALDTQALRDYGGELDDRIDETHAAIVE 520 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L LF++ GL + T+ +T VL + + P ++ R Sbjct: 521 YAGYD-FNLNSPKQLGDVLFVKLGLPAKKKTKTGYSTNVDVLEALRPQHPIIGEILEYR- 578 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + S+ ++ L++ + DGR+R T Q +RTGR S QN+P + Sbjct: 579 KLSKLKSTYVDGLLKVVGPDGRVRSTFQQ-TETRTGRISSTEPNLQNIPIRTEEG----- 632 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R A G KLV AD + IE RVLA +A +Q + A Sbjct: 633 --------------------SRMRRFFTARPGWKLVDADYSQIELRVLADLADDQNMIAA 672 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F++GED++ TT A+ F + VT R+ K + + Y GA + + + + Sbjct: 673 FQSGEDIHATTAAQVFGMPGGTVTPLMRSRAKAVNFGIVYGIGAFSLSQ-----DIGVTV 727 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 S + + E+ G R+ + Sbjct: 728 SEADSYIKSYLAHYAGVRKYMEDTIAFARENGYVKTLFGR---------RRYLPEL---- 774 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 N +R + + + + Sbjct: 775 ---------AASNKVTQAFGERVARNTPIQGTAADIIKIAM------------------- 806 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 R R G + ++ + ++ E PD + Sbjct: 807 --VRVFERLRREGLRA--RLI------------LQVHDE-----------LLVEAPDDEI 839 Query: 642 FNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 A ++L M A +PL+A+ + Sbjct: 840 DRARAILKEEMEHAI--ALKVPLEADTNVGDNW 870 >gi|302533846|ref|ZP_07286188.1| predicted protein [Streptomyces sp. C] gi|302442741|gb|EFL14557.1| predicted protein [Streptomyces sp. C] Length = 483 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 91/604 (15%), Positives = 165/604 (27%), Gaps = 152/604 (25%) Query: 95 CTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 T + A AL + G+EL + + + Sbjct: 2 DTALAAYLVKPGRRSFALDVLSVEY--------LGREL-----QPPAADGQLAFGADDTA 48 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDV 201 EA L + ++ E L + G D Sbjct: 49 EADALMAQ-----ARAVLDLGDAFTAKLPEVGAVELLHEMELPTSELLARLERAGIAADR 103 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT--- 258 + Q + +E + + ++L+ F E L T+T Sbjct: 104 DHMEGMEQQFAGAVQQAVKEAHAAVGH-EFNLGSPKQLQEVFFGELDLPKTKKTKTGYTT 162 Query: 259 CQRVLSSNK-KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 L+ + + + ++ V + LV+++ +DGR+ + A+ TG Sbjct: 163 DADALAWLATQTDHELPVIMLRHREQAKLRVT-VEGLVKSIAADGRVHTSFSQTTAA-TG 220 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-L 376 R S QN+P + +R + EG + L Sbjct: 221 RLSSTDPNLQNVPVRTDEGRA-------------------------IRRGFVVGEGYESL 255 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE RV+A ++ ++ ++AF +GEDL+ T ++ F V +QV + R K M Sbjct: 256 MTADYSQIELRVMAHLSEDEGLIEAFLSGEDLHTTVASQVFGVERSQVDAEMRRKIKAMS 315 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 L GL+ A + A Sbjct: 316 YGL--------------AYGLSAFGLAQQLNIEPA------------------------- 336 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + + ++ V + + T Sbjct: 337 -----EARGLMETFFERFGGVRDYLQRVVDEARAT------------------------- 366 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 GR D+ ++ R +Q + DI+ M+ Sbjct: 367 -GYTATVFGRRRYLPDLNSDN---RQRREAAERMALNAP------IQGTAADIVKVAMLR 416 Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669 KA ++L VHDEIV E + L M + PL Sbjct: 417 VDKAIAEAGLKSRMLLQVHDEIVLEIAPGEAERVEELVRREMGAAVE--LRAPLDVSVGV 474 Query: 670 SKRY 673 + Sbjct: 475 GGDW 478 >gi|169343823|ref|ZP_02864822.1| DNA polymerase I [Clostridium perfringens C str. JGS1495] gi|169298384|gb|EDS80474.1| DNA polymerase I [Clostridium perfringens C str. JGS1495] Length = 866 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 95/644 (14%), Positives = 178/644 (27%), Gaps = 130/644 (20%) Query: 39 DHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 D L + V + + KE EN + ++ T LK +D Sbjct: 344 DEKNYLINFKELVKEEENIKSFKEFFENEAILKNGYSIKNALTALKK-LGIDFNGLA-FD 401 Query: 96 TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 + A GE LS K + + + + + + Sbjct: 402 CELAAYLIDSSK-----GEYTLLSLINNYLSKFPNVKEGEEDLVGISFMKELTLVLKKKI 456 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 + + + + + ++ G+ V+ + L+ E Sbjct: 457 EEEKMERLMYDIELPLET--------------VLSSMESIGFKVNKDILDELSIKFKREL 502 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272 + +E+ L + ++L LF + L + T+ +T VL K P Sbjct: 503 EETQKEIFEL-ADEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPI 561 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 ++ + S+ + L +++DG + T + TGR S QN+P Sbjct: 562 IEKI-TYFRQLSKIYSTYVEGLKAVIDTDGSIHSTFNQTVTT-TGRLSSTEPNLQNIPIK 619 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391 E +R I EG L+ AD + IE RVLA Sbjct: 620 YEMGRE-------------------------IRKVFIPKKEGDLLISADYSQIELRVLAH 654 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++G++ + AF D++ T + F V +VT R+ K + + Y G + + Sbjct: 655 ISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ- 713 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 LN++ + E + + + + + R Sbjct: 714 ----DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNR--RRYIPEAN 767 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + V L + G A K V + K+ N L S L Sbjct: 768 ASNKIVKALG---ERLAMNAPIQGTAADIIKLAMVNVYNKLKELN-----LNSKLILQVH 819 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 D DI+ + Sbjct: 820 DELIINVVKGEL------------------------DIVKK------------------- 836 Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +L M + +PL + + + K Sbjct: 837 --------------LLKEEMENTIK--LSVPLDVDVNVGEDWYK 864 >gi|221195745|ref|ZP_03568799.1| DNA polymerase I [Atopobium rimae ATCC 49626] gi|221184511|gb|EEE16904.1| DNA polymerase I [Atopobium rimae ATCC 49626] Length = 903 Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats. Identities = 82/595 (13%), Positives = 157/595 (26%), Gaps = 129/595 (21%) Query: 87 DIPIHRWICTLVLARSNGLPSALKAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 D+ R V A + + ++ G + I Sbjct: 426 DVDASRIFDVGVAAYLLESDRSSFTIPSLVEFYFGVELSVGSDKIPAAAYEAVAARALKA 485 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 E + E+F+ +E + + RG VD A Sbjct: 486 TLTKKLED------------DKSLELFETIEMGL------LPVLAAMERRGLFVDPAKLA 527 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTC 259 ++ + + + + + +L LF GL L + +T Sbjct: 528 EQSKELGADIASRVERIHEAAG-ETFNLDSPSQLSHVLFDVLGLPTFGLKKTRSGFYSTN 586 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 +VLS V R ++ L+ L + D R+ T A+ TGR Sbjct: 587 AKVLSDLADTYQIVADVLEYR-ERAKIKSTYLDALPALIRGDHRIHTTFNQTVAA-TGRL 644 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+P S + VR+ G + Sbjct: 645 SSSDPNLQNIPTRSE-------------------------LGHRVRTAFTVPSGHVFLAC 679 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R+LA ++G++ + AF++G D + T +R+F V +VT + R+ K + + Sbjct: 680 DYSQIELRLLAHLSGDEHLIAAFQSGADFHAATASRTFGVPVEEVTPELRSRAKAVNFGI 739 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y Q T L + + + + E Sbjct: 740 VYGQ-----QAYGLATSLKIPRAEAQDMIDRYFAAYPGVRAYLDESVRIAHEKGYAVTMY 794 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 G +R + + Q + ++ + G A K + + + + Sbjct: 795 GR--KRHIREFGQHNRQLIAFG---ERTAMNHPMQGSAADIIKIAMIRVEKRLRKEGC-- 847 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + ++ + Sbjct: 848 ----------------------------------------------AAKLI----LQIHD 857 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + E P+ + S L M +PL A+ + Sbjct: 858 E-----------LDLEVPNDEIEAVSRLVKETMEEVVE--LKVPLIADVSYGPNW 899 >gi|255994188|ref|ZP_05427323.1| DNA polymerase I [Eubacterium saphenum ATCC 49989] gi|255993856|gb|EEU03945.1| DNA polymerase I [Eubacterium saphenum ATCC 49989] Length = 918 Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats. Identities = 96/684 (14%), Positives = 191/684 (27%), Gaps = 161/684 (23%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 + + + F D + + D + + + V +V ++ L A Sbjct: 337 HIDKPEIYAAYFNVDGN----IWLLDDMAQIHRVLDIVAEEKVKVVGYDLK---NALFAL 389 Query: 84 FNLDIPI-HRWICTLVLARSNGLPSALKA----VGEALKLS-SQKM-----------EEG 126 +P+ + ++ + + L + S K+ ++ Sbjct: 390 LQNGLPLFTPFFDVMLAYEVINNKGKYMDFYKILEDQLGIDVSDKLLKAKRKKTLTADDI 449 Query: 127 KELIARFCKGETHECLYDRNKPNHREAW---------RLFGEYCKGDVTVTREIFKRLEP 177 KE A CK N Y V + +++ +L+ Sbjct: 450 KERYANICKSLKKTNNDVVNAALGDVESSDENARIGHEDALLYLLETVNI-FKVYDKLKS 508 Query: 178 LSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E L + ++ + G +D T + +L ++ L Sbjct: 509 QIEEDDLQKVFYEIEMPLVEVIASMENTGVWLDTEFLKTYEAELSNIEAELLDKIYELAG 568 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L LF + L + T+ +T VL +K P + R + S Sbjct: 569 F-EFNVNSPKQLGEVLFEKLNLEPKVKTKRGYSTNAEVLQKLRKTHPIIDLILEFR-KVS 626 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + + + +DG++R +GA TGR + Q +P + + Sbjct: 627 KLNSTYVRGFMGFKGTDGKVRPEFLQIGA-STGRMACINPALQTIPVKTDMGKR------ 679 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +R A + + V AD + IE R+L ++ ++ + AF++ Sbjct: 680 -------------------IRKAFKAGKDRVFVSADYSQIELRILGHVSCDEGLINAFKS 720 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GED++ V+K R+ K + + Y + L + Sbjct: 721 GEDIHEAVAVNVLGAQKGAVSKAVRSKAKAINFGVIYGM-----SDFGLSNELEI----- 770 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 ++ + KH V E Sbjct: 771 ----------------------------------SRKDAKKYIDEYFAKHRAVYEYMEAQ 796 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 +QT GR ++ + Sbjct: 797 KSIAKQTGAVRTET--------------------------GRIRKIPEINAQNIMVRNL- 829 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPD 638 R +Q + DI+ M N +A IVL +HDE+V + Sbjct: 830 --GERLAMNSP------IQGMGADIMKLAMNNVYRAIQKQGLDAKIVLQIHDELVIDASV 881 Query: 639 TDEFNASM-LYHLMTSNPSWAKGL 661 +D L M + + GL Sbjct: 882 SDGEKVKKLLKDEMEAAYNLKTGL 905 >gi|168204822|ref|ZP_02630827.1| DNA polymerase I [Clostridium perfringens E str. JGS1987] gi|170663672|gb|EDT16355.1| DNA polymerase I [Clostridium perfringens E str. JGS1987] Length = 866 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 96/644 (14%), Positives = 178/644 (27%), Gaps = 130/644 (20%) Query: 39 DHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 D L + V + + KE EN D ++ T LK +D Sbjct: 344 DEKNYLINFKELVKEEENIKAFKEFFENEDTLKNGYSIKNALTALKK-LGIDFNGLA-FD 401 Query: 96 TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 + A GE LS K + + + + + + Sbjct: 402 CELAAYLIDSSK-----GEYTLLSLINNYLSKFPNVKEGEEDLVGISFMKELTLVLKKKI 456 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 + + + + + ++ G+ V+ + L+ E Sbjct: 457 EEEKMERLMYDIELPLET--------------VLSSMESIGFKVNKDILDELSIKFKREL 502 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272 + +E+ L + ++L LF + L + T+ +T VL K P Sbjct: 503 EETQKEIFEL-ADEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPI 561 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 ++ + S+ + L +++DG + T + TGR S QN+P Sbjct: 562 IEKI-TYFRQLSKIYSTYVEGLKSVIDTDGSIHSTFNQTVTT-TGRLSSTEPNLQNIPIK 619 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391 E +R I EG L+ AD + IE RVLA Sbjct: 620 YEMGRE-------------------------IRKVFIPKKEGDLLISADYSQIELRVLAH 654 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++G++ + AF D++ T + F V +VT R+ K + + Y G + + Sbjct: 655 ISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ- 713 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 LN++ + E + + + + + R Sbjct: 714 ----DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNR--RRYIPEAN 767 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + V L + G A K V + K+ N L S L Sbjct: 768 ASNKIVKALG---ERLAMNAPIQGTAADIIKLAMVNVYNKLKELN-----LNSKLILQVH 819 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 D DI+ + Sbjct: 820 DELIINVVKGEL------------------------DIVKK------------------- 836 Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +L M + +PL + + + K Sbjct: 837 --------------LLKEEMENTIK--LSVPLDVDVNVGEDWYK 864 >gi|119717230|ref|YP_924195.1| DNA polymerase I [Nocardioides sp. JS614] gi|119537891|gb|ABL82508.1| DNA polymerase I [Nocardioides sp. JS614] Length = 889 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 104/671 (15%), Positives = 186/671 (27%), Gaps = 139/671 (20%) Query: 22 CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVL 80 A V A D V Q L L + V H++ L Sbjct: 334 HWSAGTGDVTSLALATTDGLAAWVAADQLDVADQTALAGWLADPKRPKVLHDAKGPMLAL 393 Query: 81 KACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 A +P+ T + A + + + + Sbjct: 394 AAW---GLPLAGLDRDTALSAYLARPDQRSYDLADL-------------TVRYLKRELKQ 437 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLD 189 D R GE ++ L+ E L L Sbjct: 438 GGADDGQLSLDGLDDRNAGEIEMLHARAVLDLAAALDDELEERGGTRLLNDIELPLVDLL 497 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G VD L E ++ + + + ++L+ LF E G+ Sbjct: 498 AKMEQTGIAVDTDHLEALESHFAAEVRDAAEQAFGVIGKEI-NLGSPKQLQAVLFDELGM 556 Query: 250 HLEDLTET---TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 T+T T L + K P + + +R SR + L++ + DGR+ Sbjct: 557 PKTKRTKTGYTTDADALQALYVKTEHPFLLHLLRHR-DVSRLRQT-IEGLLKTVAGDGRI 614 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 T A+ TGR S QN+P + + Sbjct: 615 HTTFNQTIAA-TGRLSSTEPNLQNIPIRTEEGRR-------------------------I 648 Query: 365 RSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 R + G + L+ AD + IE R++A ++ + ++AF++G D + T AR F+V Sbjct: 649 REGFVVGPGYESLMTADYSQIEMRIMAHLSEDDLLIEAFKSGRDFHSITAARVFDVPADD 708 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + RA K M L Y L + + + + ++ Sbjct: 709 VTVEMRAKIKAMNYGLAYG-----LSAFGLGQQLGIEPSEARGLMDEYFQTFGGIRDYLG 763 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 + E + + +R Sbjct: 764 GVVEEARKAGFTETI-----------------------------------------WGRR 782 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 R +P + + R + + N + + + Sbjct: 783 RYLPDLTSDNRQ----------RREMAERMALNAPIQGSAADLIKIAMLNVDR------- 825 Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 A++ LA M+ L VHDE+V E ++ +L M + A +P Sbjct: 826 AIAAAGLASRML----------LQVHDELVFEVAPGEQEPLEVLVREQMGAAADLA--VP 873 Query: 663 LKAEGYESKRY 673 L + + Sbjct: 874 LDVSVGFGRSW 884 >gi|28211720|ref|NP_782664.1| DNA polymerase I [Clostridium tetani E88] gi|28204162|gb|AAO36601.1| DNA polymerase I [Clostridium tetani E88] Length = 882 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 94/635 (14%), Positives = 191/635 (30%), Gaps = 138/635 (21%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHR-WICTLVLARSNGL 105 + ++LK E V +V+H + VL LD+ + + A Sbjct: 373 ENKDKTIEILKTIFEKEAVRVVSH----DVKVLSMALKKLDVEFTKALFDLKIAAYLIDS 428 Query: 106 PSALKAVGEALK--LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 + + ++ LS ++ + I E + Y Sbjct: 429 SKSDYDLSTLIQECLSKIVKDDEEREIRETSLLEKLCANLKEQI----INLEMEKLY--- 481 Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V + + + G+ VD + + + + E K+ +E+ Sbjct: 482 -YEVELPLAF--------------VLANMELEGFKVDGEMLENIGKKLQREIEKVQKEIY 526 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280 L + ++L LF + L + T+ +T +VL + P ++ Sbjct: 527 EL-ADEEFNVNSPKQLGKILFEKLDLPVIKKTKTGYSTNAQVLEVLEDKHPIISKI-GYY 584 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ + L ++ DGR+ + + TGR S QN+P E Sbjct: 585 RQLTKLYSTYVEGLKNVIDEDGRIHSSFNQTVTT-TGRLSSTEPNLQNIPIKYEMGRE-- 641 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 VR + + E ++ AD + IE RVLA +A ++ + Sbjct: 642 -----------------------VRKVFVPNYENSIILSADYSQIELRVLAHIADDENLI 678 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF+ D++ T + F V +VT + R K + + Y G + L + Sbjct: 679 NAFKHHADIHTKTASEVFKVPIDEVTVNMRGNAKAVNFGIVYGIG-----DFSLAKDLKI 733 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + ++ E + + + + + + R K+ V Sbjct: 734 SRKEAKGYIDTYFERYPNVKKYMDETIDKAKRDMYVTTILNR--RRFIPEIGNKNKIVKA 791 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 L + T G A K V + + L RD+ + Sbjct: 792 LG---ERLAMNTPIQGSAADIIKMAMVKVFNV----------------LKERDLKSK--- 829 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH-DEIVCETPD 638 I+ + ++L V+ DE+ Sbjct: 830 -----------------------------II----LQVHDE---LILNVYKDEL------ 847 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E S++ M + +PL+ + E + + Sbjct: 848 --EEIKSIVKDSMENVLP--LSVPLEVDINEGENW 878 >gi|323360012|ref|YP_004226408.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Microbacterium testaceum StLB037] gi|323276383|dbj|BAJ76528.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Microbacterium testaceum StLB037] Length = 879 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 93/632 (14%), Positives = 173/632 (27%), Gaps = 145/632 (22%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP--- 106 P + L E L + D V ++ + L I + ++ Sbjct: 363 PAVRDALAEWLAS-DTPKVMADAKPQVKALLR---EGIALGGIASDVILAGWLVRPSFPD 418 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 L + + +K+ E E Sbjct: 419 KTLGDLVQRY--LDEKLPEADPTQLVPETEGATPGQLAWFIRRVAE---------AQRAD 467 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + + + L+ E + G V A + + L ++ + Sbjct: 468 LPERVAEVLD---DIEMPTLTALADMELAGVAVSHAKLSGFSAELGARADALARDAYAAI 524 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKK--LTPQAIQVFNNRM 281 V + ++L+ LF E L T++ T L+ ++ P + +R Sbjct: 525 GHEV-NLGSPKQLQEVLFDELQLPKTRKTKSGYTTDAAALADLQESAPHPFLDLLLKHRE 583 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ L A DGR+ T G+ +TGR S QN+P + Sbjct: 584 ATKLKQI--IDALDTATGPDGRIHTTYVQTGS-QTGRLSSTDPNLQNIPIRTEE------ 634 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLK 400 S +R+ EG L+ AD + IE R++A ++G+ ++ Sbjct: 635 -------------------SRRIRAAFEVGEGYETLLTADYSQIEMRIMAHLSGDPGLIE 675 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +GEDL+ AR F V PA+VT R K M L Y + L Sbjct: 676 AFNSGEDLHRFVGARVFGVEPAEVTPAMRTKVKAMSYGLVYG-----LSAFGLSKQL--- 727 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + +++ + + V + Sbjct: 728 ------------------------------------RIEQSEAKKLMLEYFARFGAVRDY 751 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + Q + GR + D+ + Sbjct: 752 LRGSVEQARQ--------------------------DGYTETIFGRRRPFPDLTSMN--- 782 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 R +Q + DI+ + + ++L +HDE+V Sbjct: 783 RVLRENAERAALNAP------IQGSAADIMKVALFRIREELASAGLRSRVLLQIHDELVV 836 Query: 635 ETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665 E + + M +PL Sbjct: 837 EIAPGEWDAVERIVRARMADAAE--LSVPLDV 866 >gi|162135103|ref|YP_001595844.1| hypothetical protein [Pseudomonas phage YuA] gi|161513950|emb|CAO77776.1| hypothetical protein [Pseudomonas phage YuA] Length = 664 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 100/714 (14%), Positives = 194/714 (27%), Gaps = 132/714 (18%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAE-DVCVILFAFGFDDHPVELWDCVH--DPVMP-QVL 57 + ID ETR DL K G + + +F +D P H +P + + Sbjct: 31 KRVAIDCETR-DPDLRKLGPGAGRRPNSYITGISFAIEDGPGGYLPIRHEGGGNLPLEGV 89 Query: 58 KEALENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARS---NGLPSAL 109 L V N ++ L ++ R+ + ++ Sbjct: 90 LAYLRAQAKVFTGDLVGANLPYDLDFLA-GDGIEFERVRYFRDIQIADPLICELHDSYSM 148 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 +A+ E + + L+ + + G+Y + D + Sbjct: 149 QAIAERWGF----YGKDEALLRAAAVDYGIDPKK----DMWMLPAKFVGKYAEEDTRLPL 200 Query: 170 EIFKRLEPLSSKEQEL---------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 I +R E ++ + + RG +D + + + T+ Sbjct: 201 NILRRQEREIDEQDLWGVYNLESKLLPILTRLRRRGVRIDCDRLDMIERWALEKETEALA 260 Query: 221 ELESLTYGLVSSSRCLE-KLKTWLFLETGLHLEDL--TETTCQRVLSSNKKLTPQAIQVF 277 ++ S+T ++ + ++ G+ L + + + L + + Sbjct: 261 QVRSITGHRIAVGDVWKPEVIAPALEHIGIKLNKTSQGKPSIDKEL--LGSIDHPVAGLL 318 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF-----------LGASRTGRWSGCVFPP 326 + ++ +++ + M +GRL GT + GR S Sbjct: 319 ERARKVNKLRTTFASSVRDHM-VNGRLHGTFNQLRRQKDDESDGTAGAAYGRLSSEHPNL 377 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 Q P + RS + EG+ D + E Sbjct: 378 QQQPARDE-------------------------FAMMWRSIYLPEEGQHWASNDYSQQEP 412 Query: 387 RVLAWMAGE------QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 R+ A + D Y + A + +R K + L L Sbjct: 413 RMAVHYACLAKDLIGHKAWLSAIEARDKYRNDPNTDNHQMMADMAGIKRKDAKEIYLGLS 472 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y G M GL ++ + Q E A G Sbjct: 473 YGMGGAK---MCRKLGL-------PTMMAVRGPRFQLFDVNSPEGQRLVAEGARRFEAAG 522 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + + QK + +L + + Sbjct: 523 PEGQALLDTFDQKVPFIKKLAKACEARAK--------------------------AVGYI 556 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 SGR + + Y + K ++Q S D M+ +A Sbjct: 557 TTLSGRRCRFPKDKDGN-------------YDWTHKGLNRLIQGSSADQTKMAMVACAEA 603 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 G DI++ VHDEI D A+ H+M + LP K + + + Sbjct: 604 GLDIIIQVHDEIAFSVHD--MKEAAEAAHIMRTCTP--LELPSKVDVEIGQSWG 653 >gi|225848519|ref|YP_002728682.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1] gi|225643280|gb|ACN98330.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1] Length = 586 Score = 237 bits (604), Expect = 6e-60, Method: Composition-based stats. Identities = 108/694 (15%), Positives = 201/694 (28%), Gaps = 152/694 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV--HDPVMPQVLKEA 60 +++D E + + Y D V L G + + D + + LKE Sbjct: 23 YVYLDTE----VAVKDFEKVDYFND-KVRLIQIGTQ-EDIFVIDAFKVERDTLKEFLKEV 76 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-----SALKAVGEA 115 LE+ + V HN F+ L N D+ T + ++ +L AV Sbjct: 77 LESKGI--VGHNLKFDLKFLA--TNFDVYPKVVFDTFIASKILAKGDNSQKHSLSAVAVR 132 Query: 116 LKLSS-QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV-----TR 169 L K + E E + + + T Sbjct: 133 LTDEEVDKTYQTSPWWVENLTKEQIEYSAKDIEVLRSIFREQVVRLNEEQTHLKSSGETY 192 Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 ++F + P+++ E +I G +D L + L E + Y Sbjct: 193 KVFGVVNPVAALEMAFLPCLVSIELSGIPIDEKQLSNLIKNSKTTFQNLYIEFKRKYYID 252 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETT--CQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 +++ +L + GL L + + Q V + P+ + + R Sbjct: 253 PF---SPQQVANFLTKKLGLKLPKTEKGSFSSQDVHLKPYEDKPEVKTLLSIRYEKKTL- 308 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 KL L + + + R+ G + +GA TGR S QN+P+ Sbjct: 309 -DKLEELSKYV-KNSRVYGEFKQIGA-STGRMSSYKPNLQNIPKN--------------- 350 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 ++S A +G ++AD + IE R+ A ++ +KAF+ +D Sbjct: 351 ----------------LKSIFRAPDGYLFIIADYSQIELRIAAEYTKDKSMIKAFQEKKD 394 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 L+ T + ++TK++R + K + L Y K+ + A Sbjct: 395 LHKLTASVITGKDYQEITKEERNLAKAINFGLIYGISPKSLVEYAKNN------------ 442 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + + + + + + E + Sbjct: 443 --------------------------YDIDITLSQAKTFHENFFNFYPKFKEWHENVKNY 476 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 E+ + GR L Sbjct: 477 LEKHKFIQVETLL------------------------GRKL------------------- 493 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDIVLTVHDEIVCETPDTDEFN 643 +Q D+L ++ K +V VHDEIV E D Sbjct: 494 --IAYKFTDAVNYPIQGSGSDLLKMAVVLFYKSLLDLDAKVVNLVHDEIVVEVKQEDVDK 551 Query: 644 ASMLYHL-MTSNPSWAK-GLPLKAEGYESKRYRK 675 + M + +P++ E SK + K Sbjct: 552 VQEILSQSMEKAGRYLLKEVPVEFEINVSKSWSK 585 >gi|15604609|ref|NP_221127.1| DNA polymerase I [Rickettsia prowazekii str. Madrid E] gi|6015004|sp|O05949|DPO1_RICPR RecName: Full=DNA polymerase I; Short=POL I gi|2073478|emb|CAA72476.1| DNA polymerase I [Rickettsia prowazekii] gi|3861304|emb|CAA15203.1| DNA POLYMERASE I (polA) [Rickettsia prowazekii] gi|5912302|emb|CAB56085.1| DNA polymerase I [Rickettsia prowazekii] gi|5912306|emb|CAB56089.1| DNA polymerase I [Rickettsia prowazekii] gi|292572425|gb|ADE30340.1| DNA polymerase I [Rickettsia prowazekii Rp22] Length = 867 Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 84/630 (13%), Positives = 179/630 (28%), Gaps = 149/630 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 + L N + + ++ +LK N I ++ + Sbjct: 372 ILNLLTNKSIKKITYSLK---HLLKFYANQSHQITAIEDLELMQYALSAGL--------- 419 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 QK K L E+ + + + L +++ Sbjct: 420 ---VQKNLFTKTLTKDNIINESARIVINFISLYKQTLLELQKNKA-------FRLYR--- 466 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + ++ + G VD + L+ E K+++E+ +L+ + Sbjct: 467 ---EIDLPTCFILDKMEKVGIKVDANYLNRLSDEFGTEILKIEEEIFALSGTK-FNIGSQ 522 Query: 237 EKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF + L + + +T +L + + + ++ Sbjct: 523 KQLGEILFKKMQLPSGNTLAKTSSYSTRAGILKKLSEDGYHIATLLLRWRQLTKLKNTYT 582 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 ++L + +N+ + T ++ TGR S QN+P S + Sbjct: 583 DSLPKQINNITKRIHTTFLQTSTTTGRLSSQEPNLQNVPIRSSDGNK------------- 629 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R IA EG KL+ AD + IE R+L+ +A +AF ED++ Sbjct: 630 ------------IREAFIAEEGYKLISADYSQIELRILSHIANIDVLKQAFINKEDIHTQ 677 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + FN+ ++T + R K + G++ Sbjct: 678 TACQIFNLKKHELTSEHRRKAKAINF--------------GIIYGIS------------- 710 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 A + + K + ++ V E + Sbjct: 711 -----------------AFGLAKQLNVSNSTASEYIKQYFAEYKGVQEYMTQTKACA--- 750 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 N + GR + + + + R Sbjct: 751 -----------------------SRNGYVTNFFGRKCFIPLIHDKK-----LKQFAERAA 782 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC-ETPDTDEFNA 644 +Q + DI+ M+ K ++L +HDE++ E Sbjct: 783 INAP------IQGTNADIIKIAMIKLDKEIEERKLKTRLILQIHDELLFEVPEIEVEIVI 836 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++ +M S +P+ E ++ Sbjct: 837 PIIKKIMEH--STNMNVPIITEIKAGNNWK 864 >gi|109948187|ref|YP_665415.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba] gi|109715408|emb|CAK00416.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba] Length = 887 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 93/613 (15%), Positives = 197/613 (32%), Gaps = 128/613 (20%) Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 I+ H+ + LKA + + + T +LA E LK ++ Sbjct: 391 IIGHDLKPLLSFLKAKYQVSLENIHIQDTQILAFLKNPEKV--GFDEVLKEYLKEDLILH 448 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187 E I F E L N + + EY + + + ++ + E Sbjct: 449 EKIKDFKTKSKAEKLERLNVELNA--LKRLCEYFEKE-GLEEDLLSLAK---EIEMPFMK 502 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + +G+ +D L Q E L++++ L + ++L L+ + Sbjct: 503 VLMNMEFQGFKIDAPYFKRLEQEFKDELKVLERQILDLIG-EDFNLNSPKQLSGVLYEKL 561 Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 L ++ + +T ++ L P + R ++ + + L+ + D ++ T Sbjct: 562 NLP-KNKSHSTDEKNLLKIMDKHPSIPLILEYR-ELNKLSNTYITPLLRLKDKDDKIHTT 619 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 G + TGR S QN+P S +R Sbjct: 620 FIQTG-TATGRLSSHSPNLQNIPVRSSKGL-------------------------LIRKG 653 Query: 368 VIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 I+S + L+ D + IE R+LA + ++ ++AF G D+++ T F K Sbjct: 654 FISSSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSRALFG---ENSAK 710 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 ++R+I K + G+ Sbjct: 711 EKRSIAKSIN--------------FGLVYGMG---------------------------- 728 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + + + +A+ ++ + + N + + +T + Sbjct: 729 --SKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNNMQEEILKTSK------------- 773 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 GR V+ D Y+ Y + I Q + Sbjct: 774 -------------AFTLLGRYRVF-DFNGVNDYVKGN---------YLREGVNAIFQGSA 810 Query: 607 RDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKG 660 D+L GM+ ++ ++L VHDE++ E + + + ++ + +A Sbjct: 811 SDLLKLGMLKVSERFKNDSSVRLLLQVHDELIFEIEEKNALELQQEIQRILNNEV-YALR 869 Query: 661 LPLKAEGYESKRY 673 +PL+ + +KR+ Sbjct: 870 VPLETSAFIAKRW 882 >gi|308807921|ref|XP_003081271.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri] gi|116059733|emb|CAL55440.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri] Length = 968 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 101/773 (13%), Positives = 189/773 (24%), Gaps = 197/773 (25%) Query: 44 LWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 D + +V KE EN +V V HN F+R V++ + + T+ +AR Sbjct: 246 WVDTLRGGEGVWEVFKEYFENPNVKKVWHNYSFDRHVVENHHGIKLAGFA-ADTMHMARL 304 Query: 103 NGLPSALK----------------AVGEALKLSSQKMEEGKELIARFCKGE-THECLYDR 145 L E L ++ M + + F K + + + Sbjct: 305 WNSNRGLDGGYSLEALSSSAEVMSDCAEMLGAGAEMMRAKRGMKKIFGKPKLKKDGTPGK 364 Query: 146 NKP--------NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE--------------- 182 E + EY D T + + LE Sbjct: 365 TIILPPVEEIQEDVEQRDKWIEYSALDAQATWFLRESLEAKLRGMSCEACPILASKPGYR 424 Query: 183 -----QELW--------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE-----S 224 + + L + G VD ++ ++ ++ Sbjct: 425 KCVTLWDFYTFYLAEFGNLLTQMERNGLLVDKEHLANAEKMALEDKRVAEEYFRTWASAK 484 Query: 225 LTYGLVSSSRCLEKLKTWLF--------LETGLHL-----------------------ED 253 + + +++ LF + G+ L Sbjct: 485 CEGAKLMNVGSGLQIRQLLFAGAKNKRRDKPGVELVREFTQESTEWLAWDAAGREGKAPK 544 Query: 254 LT-----------------------ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 T VL S A + + S K Sbjct: 545 KTMKVALHGITVKPIPVQTFTATGLPAVSSVVLRSLAGKPGAARAIMDAWDTLS--DEEK 602 Query: 291 LNTLVEAMNSDGRLRGTLQFLG-------------ASRTGRWSGCVFPPQNLPRPSRSHE 337 ++ G A+ S + P Q Sbjct: 603 SEEALKKACGGAFDAFGGGQEGVQACAAIDALNDVAAIDTLLSNFIIPLQGDDIRGPEGR 662 Query: 338 -------ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 + + L+ +R A G LVVAD +E R+LA Sbjct: 663 VHGALNINTETGRLSARRPSLQNQPALEKDRYGIRKAFTAGPGNVLVVADYGQLELRLLA 722 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 MAG + +AFE G D + T ++ + K E+ L Y + + Sbjct: 723 HMAGCKSMQEAFEAGGDFHSRTALGMYSNIKDAIAK--------GEVVLEYGEQEEGVDE 774 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 + A + ++ NF + + + + W Sbjct: 775 --------KDRPALVKDVFASERRKAKVLNFSIAYGKTAHGLSKDWGTSLEEAANTVELW 826 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 V + + + ++ GR Sbjct: 827 YSDRPEVRDWQEVQKKMAVE--------------------------KNLVRTLLGRVRNL 860 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDI 624 D + R +Q + DI M+ + GY + Sbjct: 861 PDASSKNEA---FKSHALRASINTP------IQGGAADIAMLAMLQIQRCPRLKELGYKL 911 Query: 625 VLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSW---AKGLPLKAEGYESKRY 673 ++ +HDE++ E P+ + A L M + + L +G +K + Sbjct: 912 LMQIHDEVILEGPEEHKDEALALTKYHMENPFPGHVNLLDVALAVDGDYAKTW 964 >gi|317014884|gb|ADU82320.1| DNA polymerase I [Helicobacter pylori Gambia94/24] Length = 905 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 97/634 (15%), Positives = 199/634 (31%), Gaps = 144/634 (22%) Query: 58 KEALEN--TDVT----IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111 E LEN + + I+ H+ + LKA + + + R T +LA Sbjct: 393 LEFLENAFSQILQHAQIIGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNPEKV--G 450 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY-----CKGDVT 166 E LK ++ E I F + A + E+ + D+ Sbjct: 451 FDEVLKEYLKEDLIPHEKIKDF--KTKSKAEKSEQLNMELNALKRLCEHFEKGGLEEDLL 508 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + E + + +G+ +D L Q E L++++ L Sbjct: 509 ILAR---------DIETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELNVLERQILDLI 559 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L L+ + GL ++ + +T ++ L P + R ++ Sbjct: 560 GVD-FNLNSPKQLGEVLYEKLGLP-KNKSHSTDEKNLLKILDKHPSIPLILEYR-ELNKL 616 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 L+ + D ++ T G + TGR S QN+P S Sbjct: 617 FNTYTTPLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL--------- 666 Query: 347 PTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +R IAS + L+ D + IE R+LA + ++ ++AF G Sbjct: 667 ----------------LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKG 710 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D+++ T F ++ K++R+I K + G+ Sbjct: 711 RDIHLETSKALFG---EELAKEKRSIAKSIN--------------FGLVYGMG------- 746 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + + +A+ ++ + + N + Sbjct: 747 -----------------------SKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNGMR 783 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + +T + GR V+ D Y+ Sbjct: 784 EEILKTSK--------------------------AFTLLGRYRVF-DFNGVNDYIKGN-- 814 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTD 640 Y + I Q + D+L GM+ ++ ++L VHDE++ E + + Sbjct: 815 -------YLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKN 867 Query: 641 EFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + ++ + +PL+ + +KR+ Sbjct: 868 APELQQEIQRILNDEV-YPLRVPLETSAFIAKRW 900 >gi|21220485|ref|NP_626264.1| DNA polymerase I [Streptomyces coelicolor A3(2)] gi|256788382|ref|ZP_05526813.1| DNA polymerase I [Streptomyces lividans TK24] gi|289772274|ref|ZP_06531652.1| DNA polymerase I [Streptomyces lividans TK24] gi|5689896|emb|CAB52059.1| DNA polymerase I [Streptomyces coelicolor A3(2)] gi|289702473|gb|EFD69902.1| DNA polymerase I [Streptomyces lividans TK24] Length = 907 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 99/671 (14%), Positives = 177/671 (26%), Gaps = 130/671 (19%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHN 72 +D G E A D +D + + L + D V HN Sbjct: 351 VDTWALGTGSVTE------VALAASDGKAAWFDPTELDEADETAFRSWLSDPDRPKVFHN 404 Query: 73 SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132 + VL + T + A + L + +E +A Sbjct: 405 AKGAMRVLAEH-GWSVAGVGM-DTALAAYLVKPGR------RSFDLDALSLEYLHRELAP 456 Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR--EIFKRLEPLS--SKEQELWYL 188 + D+ T + E L Sbjct: 457 AAAADGQLAFGADEGAEAEVLMVQAR--AILDLGETFESRLADVGAADLLRDMELPTSAL 514 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G D + Q+ + +E + + ++L+ LF E Sbjct: 515 LARMERHGIAADREHLQAMEQMFAGAVQQAVKEAHAAAG-REFNLGSPKQLQEVLFGELN 573 Query: 249 LHLEDLTETTCQRVLSSNK----KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 L T+T + + + + ++ V + L++ + +DGR+ Sbjct: 574 LPKTKKTKTGYTTDADALAWLAAQTDNELPVIMLRHREQAKLRVT-VEGLIKTIAADGRI 632 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 T A+ TGR S QN+P + + Sbjct: 633 HTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEGRA-------------------------I 666 Query: 365 RSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 R + EG + L+ AD + IE RV+A ++ + +AF +GEDL+ T A+ F+V + Sbjct: 667 RRGFVVGEGFESLMTADYSQIELRVMAHLSEDAGLTEAFTSGEDLHTTAAAQVFSVEQSA 726 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 V + R K M L Y + LN+ ++ E + ++ R Sbjct: 727 VDAEMRRKIKAMSYGLAYG-----LSAFGLSQQLNIEAAEARGLMDAYFERFGGVRDYLR 781 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 + + G +S + + G A K Sbjct: 782 RVVDEARATGYTATLFGRRRYLP-----DLNSDNRQRREAAERMALNAPIQGTAADIVKI 836 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 + + ++ Sbjct: 837 AMLNVDKALRE------------------------------------------------- 847 Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 D L M+ L VHDEIV E + A L M + +P Sbjct: 848 ---AD-LKSRML----------LQVHDEIVLEIAPGERAAAEELVRREMANAVQ--LRVP 891 Query: 663 LKAEGYESKRY 673 L + Sbjct: 892 LGVSVGAGPDW 902 >gi|325963164|ref|YP_004241070.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3] gi|323469251|gb|ADX72936.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3] Length = 952 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 97/667 (14%), Positives = 188/667 (28%), Gaps = 131/667 (19%) Query: 21 ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTV 79 + ED + D D + + L + + V H Sbjct: 398 PGRIGEDAAALAI---VRDGAAAYIDLAGQDAESENVLAGWLRDPESPKVLHGFKAALKA 454 Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 L + L++ T + + E L + Sbjct: 455 LTSR-GLELE-GVVDDTSISGYLIQPDRRTYELAE---------LAQHHLNVGIPQATAK 503 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTV-----TREIFKRLEPLS--SKEQELWYLDQTI 192 + + EA V E+ +R + E + + + Sbjct: 504 AGQLELSFDGEDEAAADALVQSAAVVQALSRYFEGELKERRAEELLSTLELPVSRVLADM 563 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G +D+A + + ++ + V + ++L+T LF E L Sbjct: 564 ELAGIGIDMARMDDQLADLARVIDQAQEQAFAAIGHEV-NLGSPKQLQTVLFEELQLPKT 622 Query: 253 DLTET---TCQRVLSSN-KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 ++ T L + +K + + A++ L +L +++ DGR+ T Sbjct: 623 KKIKSGYTTDAASLKNLLEKTGHEFLVQLMAHREAAKLR-QMLESLKKSVAEDGRIHTTY 681 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P S VR Sbjct: 682 AQNVAA-TGRISSNNPNLQNIPIRSEEGRR-------------------------VRGIF 715 Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + EG + L+ AD + IE R++A ++G+Q ++A++ GEDL+ + F+V +VT Sbjct: 716 VVGEGYECLLSADYSQIEMRIMAHLSGDQGLIQAYKDGEDLHRFVGSNIFHVPAEEVTSA 775 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R+ K M L Y + L ++ + + ++ R + + Sbjct: 776 MRSKVKAMSYGLAYG-----LTSFGLSKQLEISVDEARTLMKEYFDRFGAVRDYLRGVVD 830 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 A I +RR +P Sbjct: 831 QARVDGYT-----------------------------------------ATIEGRRRYLP 849 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + + + N + + R G E Q ++ Sbjct: 850 DLTSTDRQ----------LRENAERIALNSPIQGSAADIIKRAML--GVHAELKAQGLA- 896 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 ++L VHDE+V E + L M + +PL+ + Sbjct: 897 --------------SRMLLQVHDELVLEVAPGERGAVEKLVTDQMAAAAD--LSVPLEVQ 940 Query: 667 GYESKRY 673 + Sbjct: 941 IGVGPSW 947 >gi|308183570|ref|YP_003927697.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4] gi|308065755|gb|ADO07647.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4] Length = 893 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 97/667 (14%), Positives = 205/667 (30%), Gaps = 148/667 (22%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78 ++ V+ AF F+D + + L++ + + H+ + Sbjct: 351 KEKKVLALAFLFEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLS 407 Query: 79 VLKACFNLDIPIHRWICTLVLARS-----NGLPSALKAVGEALKLSSQKMEEGKELIARF 133 LKA + + + R T +LA G LK + + +K+++ K Sbjct: 408 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDGVLKEYLKEELIPHEKIKDFK------ 461 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193 + A + EY + + E + + Sbjct: 462 ---TKSKVEKLEQLDMELNALKRLCEYFEKGGLEEGLLALAR----EVETPFMKVLMGME 514 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 +G+ +D L Q E L++++ L + ++L L+ + L + Sbjct: 515 FQGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVD-FNLNSPKQLSEILYEKLELPQ-N 572 Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 + +T ++ L P + R ++ L+ + D ++ T G Sbjct: 573 KSRSTDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG- 630 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 + TGR S QN+P S +R IAS + Sbjct: 631 TATGRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSK 665 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 L+ D + IE R+LA + ++ ++AF G D+++ T F + K++R+I Sbjct: 666 EYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIA 722 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G+ + Sbjct: 723 KSIN--------------FGLVYGMG------------------------------SKKL 738 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + +A+ ++ + + N + + +T + Sbjct: 739 SETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK------------------- 779 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 GR V+ VG N Y + I Q + D+L Sbjct: 780 -------AFTLLGRYRVFDFVGANDHIKGN----------YLREGVNAIFQGSASDLLKL 822 Query: 613 GMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 GM+ ++ ++L VHDE++ E + + + ++ + +PL+ Sbjct: 823 GMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETS 881 Query: 667 GYESKRY 673 + +KR+ Sbjct: 882 AFVAKRW 888 >gi|294810416|ref|ZP_06769073.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b] gi|294442381|gb|EFG11191.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b] Length = 340 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 62/443 (13%), Positives = 130/443 (29%), Gaps = 119/443 (26%) Query: 243 LFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +F + + T+T T + VL S + P ++ +R + ++ L Sbjct: 1 MFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR-GLKKLLGTYIDALPLL 59 Query: 298 MNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +N GR+ + + TGR S QN+P + +E Sbjct: 60 INPRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE------------------ 100 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R I EG AD + IE R++A ++ ++ + AF + D++ T A+ Sbjct: 101 -------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKI 153 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 + + V D R K G+++ A + + Sbjct: 154 YKIDLKDVDSDMRRKAKTANF--------------GIIYGISVFGLAERMNVD------- 192 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 + + + + + V ++ Q ++ Sbjct: 193 -----------------------RKEAKELIDGYFETYPGVKAYMDKSIQVAQE------ 223 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 + R D+ + + + R Sbjct: 224 --------------------KGYVETIFHRKRFLPDINSRNAVVRGY---AERNAINAP- 259 Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL 650 +Q + DI+ M + ++L VHDE+ P ++ + Sbjct: 260 -----IQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVNEKERVEEIVIE 314 Query: 651 MTSNPSWAKGLPLKAEGYESKRY 673 ++ +PLKA+ K + Sbjct: 315 -EMEKAYRMHVPLKADCGWGKNW 336 >gi|315655342|ref|ZP_07908242.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333] gi|315490282|gb|EFU79907.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333] Length = 932 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 102/652 (15%), Positives = 190/652 (29%), Gaps = 142/652 (21%) Query: 53 MPQVLKEALEN-------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 +P L +EN D +++ R L A ++ +L Sbjct: 389 VPDELTPQMENLLCNALAGDRKKTVYDAKSLRHALHAH-GWEMH-GAVTDIKMLDYLVNP 446 Query: 106 PSALKAVGEALK-LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW------RLFG 158 K L +++E I++ + T + + + + + W + Sbjct: 447 DGNRTKFAGVTKRLLGWEIDEKPSDISKISEQMTLDLGVELDGNSSAQPWPQTLINQAIY 506 Query: 159 EYCKGDVTVTRE---IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 Y + T E F++++ L E L Y+ + + G +D Q + E Sbjct: 507 AYALLQMQPTLEQLAHFRQVDGLLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEV 566 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNK--KLT 270 Q V + ++L+ LF + L T+T + L Sbjct: 567 AMAQQSAFDSIGREV-NLSSPKQLQEVLFTQLQLPKTKKTKTGYTTDAKALEELARYNPH 625 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 P + +R R + + L E + DGR+ T A+ TGR S QN+P Sbjct: 626 PFLEALLYHRDRIKLLQI--VRNLRERVADDGRIHTTFGQTVAA-TGRLSSIDPNLQNIP 682 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVL 389 + +R + + L+ AD + IE R++ Sbjct: 683 ARTVDG-------------------------QKIREAFVPQKPYTALMTADYSQIEMRIM 717 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++G++ L AF +GEDL+ + A + V P +VT QR+ K L Y Sbjct: 718 AHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKATSYGLAYG-----LS 772 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 L +++ Sbjct: 773 AYGLAAQL---------------------------------------NISQRDAKQLMDT 793 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + ++ +V E N++ GR Sbjct: 794 YFERFGKVREYLNQIVATA--------------------------TRVGYTETMQGRRRY 827 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYD 623 ++ + R +Q + D++ M+ + Sbjct: 828 LPELRSTN---RNVADNARRAALNAP------IQGSAADLMKAAMLQVDADLRQEQLQSR 878 Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE+V E + L MT +PL+ +R Sbjct: 879 VLLQVHDELVLEVAPGETERLEALVRQAMTGVAK--LRVPLEVSVGIGPNWR 928 >gi|317181153|dbj|BAJ58939.1| DNA polymerase I [Helicobacter pylori F32] Length = 893 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 91/617 (14%), Positives = 187/617 (30%), Gaps = 136/617 (22%) Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEG 126 I+ H+ + LKA + + + R T +LA E + K Sbjct: 397 IIGHDLKPLLSFLKANYQVPLENIRIQDTQILAFLKNP--------EKVGFDEVLKEYLK 448 Query: 127 KELI---ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 +ELI + A + EY + + E Sbjct: 449 EELIPHEKIKDFKTKSKAEKSEQLSLELNALKRLCEYFEKGGLEEGLLALAR----EVET 504 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 + + +G+ +D L Q E L++++ L + ++L L Sbjct: 505 PFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVD-FNLNSPKQLSEIL 563 Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 + + L ++ + +T ++ L P + R ++ L+ + D + Sbjct: 564 YEKLELP-KNKSRSTDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDK 621 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + T G + TGR S QN+P S Sbjct: 622 IHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL-------------------------L 655 Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R IAS + L+ D + IE R+LA + ++ + AF G D+++ T F Sbjct: 656 IRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---E 712 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 + K++R+I K + G+ Sbjct: 713 DLAKEKRSIAKSIN--------------FGLVYGMG------------------------ 734 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + + + +A+ ++ + + N + + +T + Sbjct: 735 ------SKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK--------- 779 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 GR V+ D Y+ Y + I Sbjct: 780 -----------------AFTLLGRYRVF-DFTGANDYIKGN---------YLREGVNAIF 812 Query: 603 QAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS 656 Q + D+L GM+ ++ ++L VHDE++ E + + + ++ Sbjct: 813 QGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV- 871 Query: 657 WAKGLPLKAEGYESKRY 673 + +PL+ + +KR+ Sbjct: 872 YPLRVPLETSAFIAKRW 888 >gi|308235787|ref|ZP_07666524.1| DNA polymerase I [Gardnerella vaginalis ATCC 14018] gi|311114446|ref|YP_003985667.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019] gi|310945940|gb|ADP38644.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019] Length = 1033 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 89/686 (12%), Positives = 202/686 (29%), Gaps = 152/686 (22%) Query: 31 ILFAFGFDDHPVELWDCVHDP------VMPQVLKEALENTDVTIVAHNSYFERTVLK--A 82 +L ++ + D ++ + LK+ ++ + +IV H+ +LK Sbjct: 454 VLVMLSQNNAAIVYSDVLNGDSSEDCNKICHKLKDFIKMYESSIVLHDYKKHIALLKSLK 513 Query: 83 CFNLDIPIHRWICTLVLARSNGL---PSALKAVGE-ALKLSSQKMEEGKELIARFCKGET 138 + + + + T + + ++ + E L + + + +E Sbjct: 514 IVDNNYSFNPLLDTRLASYLIEPDFRNENIEDMAEHVLNIHVENEKSNEEPAQGELDFVL 573 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWY 187 + + + + +T + + + E + Sbjct: 574 EDSDNPEELNQEEDKRKKQEKRILETA-ITIRLLAKQYAIKLDERKQTGLMVDVEMPVSR 632 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + + D G VD++ ++ E + Q++ + + ++L+ LF + Sbjct: 633 VLRGMEDAGAAVDMSRLVSMRDNFAAE-AQFAQKMALDVANKPINLQSPKQLQQLLFEDM 691 Query: 248 GLHLEDLTET----TCQRVLSSN-KKLTPQAIQ-----VFNNRMRASRSAVLKLNTLVEA 297 GL T++ T L K+ P ++ + + +L+++ Sbjct: 692 GLKPTRRTKSGSYTTNAEALQELYAKIDPDEKASQFLGALLKHRETNKLKQI-VQSLIDS 750 Query: 298 MN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 DGR+ T + A+ TGR S QN+P + E Sbjct: 751 ARYEDGRIHTTFEQTIAA-TGRLSSSDPNLQNIPNRNVVGRE------------------ 791 Query: 357 LQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R+ I +L+ D + +E R++A + ++ +KAF++G D + + Sbjct: 792 -------IRAAFIPGNQYDQLMSCDYSQVELRIMAHASADETLIKAFKSGVDFHKFVASL 844 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 + + QV+ DQR+ K M L Y L+++ A Sbjct: 845 VYKIPVEQVSPDQRSHVKAMSYGLAYG-----LSTYGLAKQLSISPAA------------ 887 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 E +K+ + V + L + Sbjct: 888 ---------------------------AEVLKEKYFDTFGGVHDYLESLVDKARK----- 915 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 GR + + + + R Sbjct: 916 ---------------------LGYTQTMFGRRRYFPKLNSTN---RASRESAERAALNAP 951 Query: 596 KLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH 649 +Q + DI+ M+ K ++L +HDE+V E + + Sbjct: 952 ------IQGSAADIMKLAMIQVDKDLREAKVKSRVILQIHDELVLEIAHGEADIVENIVK 1005 Query: 650 -LMTSNPSWAKGLPLKAEGYESKRYR 674 M +PL ++ Sbjct: 1006 NAMEHTVE--LDVPLNVSTGLGADWQ 1029 >gi|281204189|gb|EFA78385.1| DNA-directed DNA polymerase I [Polysphondylium pallidum PN500] Length = 1359 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 86/666 (12%), Positives = 173/666 (25%), Gaps = 134/666 (20%) Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG----LPSAL 109 + LE+ ++ V+ N+ + N + R I + A + Sbjct: 767 LAFMVRLLEDDNIKKVSFNAKESIKPMLW-LNQWMQPSRLIDPKIAAWVHNTEAEEMKGF 825 Query: 110 KAVGEALKLSSQKMEE-------GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 + L K E KEL + + D N R Sbjct: 826 ELTFLYHHLVENKDYEKQINLPMIKELQSLDSNKDLVIINNDNNFSMFPNDLRNSSL--V 883 Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT----KL 218 + L+ +E + + + G T + + K Sbjct: 884 MIALEQLLLQLNLQAPFYQEMRVVPILSKMELHGITFSPETFRTCSSNLQTYVQNLQGKW 943 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV-- 276 + E + + S ++K +L + + + + + T L K P + Sbjct: 944 NTEFKKDSAK---SLSSPVQIKEFLLTQYKITVSNTGKQT----LVDLIKKYPDVQYIKD 996 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRP--- 332 ++ + ++ + + Q+ + TGR S QNLPR Sbjct: 997 ILEYRHCNKILTTYVQPYLDIVKDEQAPSIHCQWIHTGTATGRLSCKQPNLQNLPRNALN 1056 Query: 333 ----SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 + + Q IS VR A EG L+ D + IE R+ Sbjct: 1057 VNYNDEDGDSELADFNIDEDEDDNMGANNQTISLNVRDGFEAREGYTLIGLDYSQIELRI 1116 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 + + +Q + F+ D++ +VT +R K + + Y G + Sbjct: 1117 MTHYSKDQKLEEYFKNEVDVFKHMAHHYLGKPVDKVTPTEREQTKRIIYGIMYGIGPHSL 1176 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 + + Sbjct: 1177 SQ--------------------------------------------ILKVSKERASQFIN 1192 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + K + E + + +GR Sbjct: 1193 DFLNKFQSIRNYIEEEKKKIR--------------------------LKKFIKTIAGRRR 1226 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT---------- 618 + V + + + R+ +I+Q + DI+ E M N Sbjct: 1227 LLPHVNSQDP---NQSHRALRQ------TVNSIIQGSASDIIKEAMFNIHVYLSQLSKEY 1277 Query: 619 -----KAGYDIVLTVHDEIVCETP-----DTDEFNASMLYHLMTSNPSWAKGLPLKAEGY 668 ++L +HDE++ E P D + + +M S +P+ Sbjct: 1278 KSLDPHNDPRLLLQIHDELIYEIPDAMLNDKESEVCINIKRIMESVYQDDLTVPIAVTMS 1337 Query: 669 ESKRYR 674 + K + Sbjct: 1338 KGKSWG 1343 >gi|9789856|sp|P56105|DPO1_HELPY RecName: Full=DNA polymerase I; Short=POL I Length = 891 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 97/664 (14%), Positives = 203/664 (30%), Gaps = 144/664 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78 ++ V+ AF ++D + + L++ + + H+ + Sbjct: 351 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLS 407 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEGKELI-ARFCKG 136 LKA + + + R T +LA E + K +ELI K Sbjct: 408 FLKAKYQVPLENIRIQDTQILAFLKNP--------EKVGFDEVLKEYLKEELIPHEKIKD 459 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + A + EY + + E + + +G Sbjct: 460 FKTKAEKLELLSVELNALKRLCEYFEKGGLEENLLSLAR----EIETPFMKVLMGMEFQG 515 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 + +D L Q E L++++ L + ++L L+ + GL ++ + Sbjct: 516 FKIDAPYFKRLEQEFKNELHVLERQILELIGVD-FNLNSPKQLSEVLYDKLGLP-KNKSH 573 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T ++ L P + R ++ L+ + D ++ T G + T Sbjct: 574 STDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TAT 631 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375 GR S QN+P S +R IAS + Sbjct: 632 GRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSKEYC 666 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ D + IE R+LA + ++ ++AF G D+++ T F + K++R+I K + Sbjct: 667 LLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSI 723 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G+ + + Sbjct: 724 N--------------FGLVYGMG------------------------------SKKLSET 739 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + +A+ ++ + + N + + +T + Sbjct: 740 LNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK---------------------- 777 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 GR V+ G N Y + I Q + D+L GM+ Sbjct: 778 ----AFTLLGRYRVFDFTGANDYVKGN----------YLREGVNAIFQGSASDLLKLGML 823 Query: 616 NATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYE 669 ++ ++L VHDE++ E + + + ++ + +PL+ + Sbjct: 824 KVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFI 882 Query: 670 SKRY 673 +KR+ Sbjct: 883 AKRW 886 >gi|225849884|ref|YP_002730118.1| DNA polymerase I [Persephonella marina EX-H1] gi|225644858|gb|ACO03044.1| DNA polymerase I [Persephonella marina EX-H1] Length = 584 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 117/708 (16%), Positives = 205/708 (28%), Gaps = 185/708 (26%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 LFID E K + + L G + + ++D P + LKE L Sbjct: 23 KYLFIDTE-----VAVKSFEDIDFFNDKIRLIQIG-NYSKIFVYDMFRIPQFSEHLKELL 76 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALKAVGEALK 117 EN V + HN F+ LK F + I T++ ++ +L A+ L Sbjct: 77 ENKGV--IGHNLKFDIKFLKTNFGIFPQI--VFDTMIASQLLSEDSREKHSLSALSYRL- 131 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K + +N Y DV V REIF L Sbjct: 132 -----------TDNHLDKSQQRSPWGIKNLT------EEQLRYAAKDVQVLREIFPVLRD 174 Query: 178 LSSK------------------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 ++ E I RG VD L + Q V Sbjct: 175 ELNRIETPHKATGKIHETFGLDNGVAVVEMAFVPQLADIELRGMPVDEKLLKDMLQKVST 234 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTP 271 + + + +K+ WL + GL L + + S+ ++ Sbjct: 235 DYQREYIDFVRRYGVDPF---SPQKVTNWLTSKLGLKLPTTQKGSLSSQDSALRRYIDRE 291 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + ++ + R + + KL L +A +GR+ + +GA TGR + QN+ R Sbjct: 292 EVRKLLHIRSE--KKILDKLKEL-KAHLINGRIYTQFKQIGAP-TGRMASMRPNLQNITR 347 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 +R EGKKL+VAD + IE R+ A Sbjct: 348 D-------------------------------LRVLFRPPEGKKLIVADYSQIELRIAAE 376 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ +KAF G+DL+ T + Q+TKD+R + K + L Y ++ + Sbjct: 377 YVNDETMIKAFSEGKDLHRFTASLILGKEYDQITKDERQMAKAINFGLIYGISPRSLMEY 436 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A ++ + + Sbjct: 437 AR--------------------------------------NSYGVDISLKDAQIFHSRFF 458 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + + + + + ++ + + +R V Sbjct: 459 EVYKGFKSWHDRVKEYLKEHNKMVVYTLLGRRMVVRRFTE-------------------- 498 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM---NA-TKAGYDIVLT 627 VQ D+L ++ IV Sbjct: 499 -------------------------AVNFPVQGTGSDLLKMAVVFFGKLKEDRDAGIVNL 533 Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPS-WAKGLPLKAEGYESKRY 673 VHDEI+ E ++ + M K +P++ E + + Sbjct: 534 VHDEIIVECSESIADEIRDILSESMLRAGKILLKKVPVEFEVEIVESW 581 >gi|298735561|ref|YP_003728082.1| DNA polymerase I [Helicobacter pylori B8] gi|298354746|emb|CBI65618.1| DNA polymerase I [Helicobacter pylori B8] Length = 893 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 94/632 (14%), Positives = 194/632 (30%), Gaps = 140/632 (22%) Query: 58 KEALEN--TDVT----IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111 E LEN + + I+ H+ + LKA + + + R T +LA Sbjct: 381 LEFLENAFSQILQHACIIGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNP------ 434 Query: 112 VGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK--GDVTVT 168 E + K ++LI + C+ + Sbjct: 435 --EKVGFDEVLKEYLKEDLIPHEKIKDFKTKSKAEKLELLSVELNALKRLCEYFEKGGLE 492 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + E + + +G+ +DV L Q E L++++ L Sbjct: 493 EGLLALAR---GVETPFMKVLMGMEFQGFKIDVPYFKRLEQEFKDELKVLERQILDLIGV 549 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L L+ + GL ++ + +T ++ L P + R ++ Sbjct: 550 D-FNLNSPKQLGEVLYEKLGLP-KNKSHSTDEKNLLKILDKHPSIALILEYR-ELNKLFN 606 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 L+ + D ++ T G + TGR S QN+P S Sbjct: 607 TYTTPLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL----------- 654 Query: 349 SITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R IAS + L+ D + IE R+LA + ++ ++AF G D Sbjct: 655 --------------LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRD 700 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +++ T F + K++R+I K + G+ Sbjct: 701 IHLETSKALFG---EDLAKEKRSIAKSIN--------------FGLVYGMG--------- 734 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + + +A+ ++ + + N + + Sbjct: 735 ---------------------SKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNGMKEE 773 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 +T + GR V+ D Y+ Sbjct: 774 ILKTSK--------------------------AFTLLGRYRVF-DFNGVNDYVKGN---- 802 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF 642 Y + I Q + D+L GM+ ++ ++L VHDE++ E + + Sbjct: 803 -----YLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAP 857 Query: 643 NA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + ++ + +PL+ + +KR+ Sbjct: 858 ELQQEIQRILNDEV-YPLRVPLETSAFIAKRW 888 >gi|15646079|ref|NP_208261.1| DNA polymerase I (polA) [Helicobacter pylori 26695] gi|2314647|gb|AAD08510.1| DNA polymerase I (polA) [Helicobacter pylori 26695] Length = 892 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 97/664 (14%), Positives = 203/664 (30%), Gaps = 144/664 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78 ++ V+ AF ++D + + L++ + + H+ + Sbjct: 352 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLS 408 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEGKELI-ARFCKG 136 LKA + + + R T +LA E + K +ELI K Sbjct: 409 FLKAKYQVPLENIRIQDTQILAFLKNP--------EKVGFDEVLKEYLKEELIPHEKIKD 460 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + A + EY + + E + + +G Sbjct: 461 FKTKAEKLELLSVELNALKRLCEYFEKGGLEENLLSLAR----EIETPFMKVLMGMEFQG 516 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 + +D L Q E L++++ L + ++L L+ + GL ++ + Sbjct: 517 FKIDAPYFKRLEQEFKNELHVLERQILELIGVD-FNLNSPKQLSEVLYDKLGLP-KNKSH 574 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T ++ L P + R ++ L+ + D ++ T G + T Sbjct: 575 STDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TAT 632 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375 GR S QN+P S +R IAS + Sbjct: 633 GRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSKEYC 667 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ D + IE R+LA + ++ ++AF G D+++ T F + K++R+I K + Sbjct: 668 LLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSI 724 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G+ + + Sbjct: 725 N--------------FGLVYGMG------------------------------SKKLSET 740 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + +A+ ++ + + N + + +T + Sbjct: 741 LNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK---------------------- 778 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 GR V+ G N Y + I Q + D+L GM+ Sbjct: 779 ----AFTLLGRYRVFDFTGANDYVKGN----------YLREGVNAIFQGSASDLLKLGML 824 Query: 616 NATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYE 669 ++ ++L VHDE++ E + + + ++ + +PL+ + Sbjct: 825 KVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFI 883 Query: 670 SKRY 673 +KR+ Sbjct: 884 AKRW 887 >gi|15612428|ref|NP_224081.1| DNA polymerase I [Helicobacter pylori J99] gi|9789748|sp|Q9ZJE9|DPO1_HELPJ RecName: Full=DNA polymerase I; Short=POL I gi|4155975|gb|AAD06938.1| DNA POLYMERASE I [Helicobacter pylori J99] Length = 897 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 92/619 (14%), Positives = 190/619 (30%), Gaps = 140/619 (22%) Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEG 126 I+ H+ + LKA + + + R T +LA V + ++ Sbjct: 401 IIGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEY---LKEDLIP 457 Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEY-----CKGDVTVTREIFKRLEPLSSK 181 E I F + A + EY + D+ Sbjct: 458 HEKIKDF--KTKSKAEKSELLSMELNALKRLCEYFEKGGLEEDLLTLAR---------DI 506 Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E + + +G+ +D L Q E L++++ L + ++L Sbjct: 507 ETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELNVLERQILDLIGVD-FNLNSPKQLGE 565 Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 L+ + GL ++ + +T ++ L P + R ++ L+ + D Sbjct: 566 VLYDKLGLP-KNKSHSTDEKNLLKILDKHPSIPLILEYR-ELNKLFNTYTTPLLRLKDKD 623 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 ++ T G + TGR S QN+P S Sbjct: 624 DKIHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL------------------------ 658 Query: 362 DCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R IAS + L+ D + IE R+LA + ++ ++AF G D+++ T F Sbjct: 659 -LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG-- 715 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 + K++R+I K + G+ Sbjct: 716 -EDLAKEKRSIAKSIN--------------FGLVYGMG---------------------- 738 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + + + + +A+ ++ + + N + + +T + Sbjct: 739 --------SKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSK------- 783 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 GR V+ G N Y + Sbjct: 784 -------------------AFTLLGRYRVFDFTGVNDYVKGN----------YLREGVNA 814 Query: 601 IVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN 654 I Q + D+L GM+ ++ ++L VHDE++ E + + + ++ Sbjct: 815 IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDE 874 Query: 655 PSWAKGLPLKAEGYESKRY 673 + +PL+ + +KR+ Sbjct: 875 V-YPLRVPLETSAFIAKRW 892 >gi|158313878|ref|YP_001506386.1| DNA polymerase I [Frankia sp. EAN1pec] gi|158109283|gb|ABW11480.1| DNA polymerase I [Frankia sp. EAN1pec] Length = 911 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 98/644 (15%), Positives = 182/644 (28%), Gaps = 129/644 (20%) Query: 44 LWD---CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 D + L + L + D H+ L + T + A Sbjct: 378 WIDPTQLTAGDSV--ALGDWLADPDRAKAGHDLKGPMLALAEA-GFTLA-GVTSDTALAA 433 Query: 101 RSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 L + E K + R Sbjct: 434 YLALPGQRSFDLADLALRYLH-----RELKSDAPSNGQLTLDGSGEADEAEADAIRARAA 488 Query: 158 GEYC-KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 E D + R L E L + T+ G D L + E + Sbjct: 489 LELADALDGDLERR--SAARLLREMELPLVTILATMERAGIAADEDHLLELQKHYGGEVS 546 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNK--KLTP 271 + + + + ++L+ LF E L +T T L+ P Sbjct: 547 DVAAQAHGIVGRT-FNLGSPKQLQQILFDELALPKTKRIKTGYTTDADALAWLATQSDHP 605 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + ++R +R +++L+ ++ GR+ T + A+ TGR S QN+P Sbjct: 606 LIPVLLHHR-DVARLK-TVVDSLIPMIDDAGRIHTTFNQMIAA-TGRLSSTDPNLQNIPI 662 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLA 390 + +R + +G L+ AD + IE R++A Sbjct: 663 RTPQGR-------------------------QIRQAFVVGQGYETLLTADYSQIEMRLMA 697 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++G+ ++AF +GEDL+ A++F + ++V + R K M L Y Sbjct: 698 HLSGDAGLIEAFASGEDLHSFVAAQAFGLPVSEVDPELRRRIKAMSYGLAYG-----LSA 752 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 L + + ++ + +F R + + + +G Sbjct: 753 FGLAGQLGIAPDEAREQMDAYFARFGGVRDFLRGVVDQARRDGYTETIMGR--------- 803 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R+ ++ + Q E+ N + I ML GR+L Sbjct: 804 RRYLPDLTSDNTQRRQMAERMALN------------APIQGSAADIIKIAMLGVGRALRS 851 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 RD+ + ++L VHD Sbjct: 852 RDLSS-----------------------------------------------RLLLQVHD 864 Query: 631 EIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 E+V E + L M S +PL+ + + Sbjct: 865 ELVLEIAPGERAEVEALVRAEMGSAYE--MSVPLEVSVGAGRTW 906 >gi|255017642|ref|ZP_05289768.1| DNA polymerase I [Listeria monocytogenes FSL F2-515] Length = 316 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 52/418 (12%), Positives = 112/418 (26%), Gaps = 115/418 (27%) Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 S ++ R + + L++ + + T ++TGR S Sbjct: 2 ESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVD 60 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLA 382 QN+P + +R + G K+ AD + Sbjct: 61 PNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKMFSADYS 95 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 +E RVLA ++ ++ + AF+ D++ T F+V +V R K + Sbjct: 96 QVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVN------ 149 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 G++ + Sbjct: 150 --------FGIVYGISDYGLSQ------------------------------NLGITRKE 171 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + + + V E ++ + ++ + I Sbjct: 172 AKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH--------------------- 208 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----- 617 R ++ + R +Q + DI+ + M+ Sbjct: 209 ---RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMSERLV 256 Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 K ++L VHDE++ E P+ + + +M + +PLK + + Sbjct: 257 SEKLKAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 312 >gi|125560330|gb|EAZ05778.1| hypothetical protein OsI_28011 [Oryza sativa Indica Group] Length = 1033 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 109/806 (13%), Positives = 202/806 (25%), Gaps = 197/806 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFG---------FDDHPVELWD--CVHDPVM 53 D E + ID+ + VI F+ F + +W + Sbjct: 284 ACDTE-VANIDVKEETP---VGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGGRDV 339 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------ 106 E+ + V HN F+ V++ C I + + T+ LAR Sbjct: 340 LMEFAPFFEDPSIKKVWHNYSFDSHVIENC---GIKVAGFHADTMHLARLWDSSRRTDGG 396 Query: 107 SALKAVGEALKLSS----QKMEEGKELIA--RFCKGETHECLYDRNKPNHR------EAW 154 +L+ + ++ + GK + K + + E Sbjct: 397 YSLEGLTNDHRVMDAVVKDIPKTGKVSMKTIFGRKKVRKDGSEGKTISIEPVEKLQREDR 456 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWYLDQTIND 194 L+ Y D T ++++ L+ + L + Sbjct: 457 ELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDDCPRGTMYDFYEEYWRPFGALLVKMET 516 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF----- 244 G VD A + + ER + + +++ F Sbjct: 517 EGVLVDRAYLSEIEKAAVTERELAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIEN 576 Query: 245 -LETGLHLE-DLT-------------ETTCQRVLSSNKKLTPQAIQVFN----------- 278 + G T + T + + Sbjct: 577 RNKRGETWPQSKTFKVPNDEGITTEGKKTPKSRTIKLFTIVEDLKIDMFTPTGWPSVSGD 636 Query: 279 -NRMRASRS---AVLKLNT------------LVEAMNSDGRLRGT-LQFLGASRTGR--- 318 R A + + K++ L E D L GT + G GR Sbjct: 637 VLRSLAGKIPTNRIYKIDDGQEFDEDGSSLELPEQDIEDTSLYGTAYEAFGGGNKGREAC 696 Query: 319 ---------------WSGCVFPPQNLPRPSRSHE-------ELDQIITHLPTSITSDPDP 356 SG + P Q + + T + Sbjct: 697 HAIAALCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNINTETGRLSARTPNLQNQPA 756 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 L+ +R +A+ G L+VAD +E R+LA + + L+AF+ G D + T Sbjct: 757 LEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNM 816 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 + V + K + G L A Sbjct: 817 YQHVRDAVEE------------------KKVLLEWHPQPGQEKPPVPLLKDAFGAERRKA 858 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 NF + + + K W + VS + + E Sbjct: 859 KMLNFSIAYGKTAVGLSWDWKVEVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVY- 917 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 GRS + ++ + R Sbjct: 918 -------------------------TLLGRSRQFPNMTHAGPGQKGHV---ERAAINAP- 948 Query: 597 LTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASML-YH 649 VQ + D+ M+ + G+ ++L VHDE++ E P A + Sbjct: 949 -----VQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKTIVVE 1003 Query: 650 LMTSNP--SWAKGLPLKAEGYESKRY 673 M+ + + L + +K + Sbjct: 1004 CMSKPFYGTNILKVDLAVDAKYAKSW 1029 >gi|208435338|ref|YP_002267004.1| DNA polymerase I [Helicobacter pylori G27] gi|208433267|gb|ACI28138.1| DNA polymerase I [Helicobacter pylori G27] Length = 905 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 92/665 (13%), Positives = 201/665 (30%), Gaps = 144/665 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78 +D ++ AF ++D + + L++ + + H+ + Sbjct: 363 KDKKILALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFSQILQHACI--IGHDLKPLLS 419 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEGKELIARFCKGE 137 LKA + + + R T +LA E + K ++LI + Sbjct: 420 FLKAKYQVSLENIRIQDTQILAFLKNP--------EKVGFDEVLKEYLKEDLIPHEKIKD 471 Query: 138 THECLYDRNKPNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195 C+ + ++ E + + + Sbjct: 472 FKTKSKVEKLELLSVELNALKRLCEYFEKGGLEEDLLTLAR---DIETPFMKVLMGMEFQ 528 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G+ +D L Q E L+ ++ L + ++L L+ + GL ++ + Sbjct: 529 GFKIDAPYFKHLEQEFKNELHVLEHQILDLIGVD-FNLNSPKQLSEVLYEKLGLP-KNKS 586 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T ++ L P + R ++ L+ + D ++ T G + Sbjct: 587 HSTDEKNLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TA 644 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374 TGR S QN+P S +R IAS + Sbjct: 645 TGRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSKEY 679 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 L+ D + IE R+LA + ++ ++AF G D+++ T F + K++R+I K Sbjct: 680 CLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---GDLAKEKRSIAKS 736 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + G+ + + Sbjct: 737 IN--------------FGLVYGMG------------------------------SKKLSE 752 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + + +A+ ++ + + N + + +T + Sbjct: 753 TLNIPLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK--------------------- 791 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 GR V+ D Y+ Y + I Q + D+L GM Sbjct: 792 -----AFTLLGRYRVF-DFTGVNDYIKGN---------YLREGVNAIFQGSASDLLKLGM 836 Query: 615 MNATKA-----GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGY 668 + ++ ++L VHDE++ E + + + ++ + +PL+ + Sbjct: 837 LKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPKLQREIQRILNDEV-YPLRVPLETSAF 895 Query: 669 ESKRY 673 + R+ Sbjct: 896 VANRW 900 >gi|239931893|ref|ZP_04688846.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] gi|291440261|ref|ZP_06579651.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] gi|291343156|gb|EFE70112.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] Length = 908 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 91/660 (13%), Positives = 169/660 (25%), Gaps = 140/660 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 A P +D + L + V H++ V I Sbjct: 365 VALATSAGPAAWFDPAELDEADERAFAAWLADAGRPKVFHDAKSAMRVFAEH-GWSIEGV 423 Query: 92 RWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 T + A L A+ + Sbjct: 424 TM-DTALAAYLVKPGRRSFDLDALSLEYLH------------RELAPAAVADGQLAFGAD 470 Query: 149 NHREAWRLFGE-YCKGDVTVTR--EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVAL 203 EA L + D+ + + E L + G D A Sbjct: 471 EGAEAEALMVQARAILDLGEAFGSRLEEVGAADLLRDMELPTSALLARMERHGIAADRAH 530 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQ 260 + Q+ + +E + + ++L+ LF E L T+T T Sbjct: 531 LEAMEQMFAGAVQQAVKEAHAAAGH-EFNLGSPKQLQEVLFGELALPKTKRTKTGYTTDA 589 Query: 261 RVLSSNKKLTP-QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 L+ T + + ++ V + L++ + +DGR+ T A+ TGR Sbjct: 590 DALAWLATQTDNELPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVAA-TGRL 647 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVV 378 S QN+P + +R + EG + L+ Sbjct: 648 SSTDPNLQNIPVRTDEGRA-------------------------IRRGFVVGEGFESLLT 682 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RV+A ++ ++ ++AF +GEDL+ T A+ F V + V + R K M Sbjct: 683 ADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAAAQVFAVERSAVDAEMRRKIKAMSYG 742 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 L Y + LN+ ++ E + ++ R + + Sbjct: 743 LAYG-----LSAFGLSQQLNIEAAEARALMDAYFERYGGVRDYLRRVVDEARATGYTATL 797 Query: 499 IGTACERVKKAWRQKHSRV----SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 G R+ + + + G A K + + ++ Sbjct: 798 FGR---------RRYLPDLSSDNRQRREAAERMALNAPIQGTAADIVKIAMLKVDGALRE 848 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 D+ + + Sbjct: 849 T----------------------------------------------------DLASRML 856 Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + IV E + L M +PL + Sbjct: 857 LQVHDE-----------IVLEVAPGERPAVEELVRREMADAVR--LRVPLGVSVGVGPNW 903 >gi|307638123|gb|ADN80573.1| DNA polymerase I [Helicobacter pylori 908] Length = 889 Score = 233 bits (595), Expect = 5e-59, Method: Composition-based stats. Identities = 91/619 (14%), Positives = 192/619 (31%), Gaps = 142/619 (22%) Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEG 126 I+ H+ + LKA + + + R T +LA E + K Sbjct: 395 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNP--------EKVGFDEALKEYLK 446 Query: 127 KELIA-RFCKGETHECLYDRNKPNHREAWRLFGEY----CKGDVTVTREIFKRLEPLSSK 181 ++L++ K + A + EY + +T Sbjct: 447 EDLVSHEKIKDFKAKAEKLELLSMELNALKRLCEYFETGGLEEGLLTLA--------RDI 498 Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E + + +G+ +D L Q E L++++ L + ++L Sbjct: 499 ETPFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVD-FNLNSPKQLGE 557 Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 L+ + GL ++ + +T ++ L P + R ++ L+ + D Sbjct: 558 VLYEKLGLP-KNKSHSTDEKNLLKILDKHPSIPLILEYR-ELNKLFNTYTTPLLRLKDKD 615 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 ++ T G + TGR S QN+P S Sbjct: 616 DKIHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL------------------------ 650 Query: 362 DCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R IAS + L+ D + IE R+LA + ++ ++AF G D+++ T F Sbjct: 651 -LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG-- 707 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 + K++R+I K + G+ Sbjct: 708 -EDLAKEKRSIAKSIN--------------FGLVYGMG---------------------- 730 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + + + + +A+ ++ + + N + + +T + Sbjct: 731 --------SKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSK------- 775 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 GR V+ D Y+ Y + Sbjct: 776 -------------------AFTLLGRYRVF-DFNGVNDYVKGN---------YLREGVNA 806 Query: 601 IVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN 654 I Q + D+L GM+ ++ ++L VHDE++ E + + + ++ Sbjct: 807 IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDE 866 Query: 655 PSWAKGLPLKAEGYESKRY 673 + +PL+ + + R+ Sbjct: 867 V-YPLRVPLETSAFVANRW 884 >gi|261838745|gb|ACX98511.1| DNA polymerase I [Helicobacter pylori 51] Length = 885 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 94/667 (14%), Positives = 204/667 (30%), Gaps = 148/667 (22%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78 ++ V+ AF ++D + + L++ + + H+ + Sbjct: 343 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLS 399 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL----KLSSQKMEEGKELIARF 133 LKA + + + R T +LA V + + +K+++ K Sbjct: 400 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWIPHEKIKDFK------ 453 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193 + A R EY + + E + + Sbjct: 454 ---TKSKAGKLEQLDRELNALRRLCEYFEKGGLEEGLLALAR----EVETPFMKVLMGME 506 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 +G+ +D L Q E L++++ L + ++L L+ + L ++ Sbjct: 507 FQGFKIDAPYFKRLEQEFKNELHVLERQILELIGAD-FNLNSPKQLSEILYEKLELP-KN 564 Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 + +T ++ L P + R ++ L+ + D ++ T G Sbjct: 565 KSHSTDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG- 622 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 + TGR S QN+P S +R IAS + Sbjct: 623 TATGRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSK 657 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 L+ D + IE R+LA + ++ + AF G D+++ T F + K++R+I Sbjct: 658 EYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIA 714 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G+ + Sbjct: 715 KSIN--------------FGLVYGMG------------------------------SKKL 730 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + + +A+ ++ + + N + + +T + Sbjct: 731 SETLNIPLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK------------------- 771 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 GR V+ D Y+ Y + I Q + D+L Sbjct: 772 -------AFTLLGRYRVF-DFTGANDYIKGN---------YLREGVNAIFQGSASDLLKL 814 Query: 613 GMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 GM+ ++ ++L VHDE++ E + + + ++ + +PL+ Sbjct: 815 GMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETS 873 Query: 667 GYESKRY 673 + +KR+ Sbjct: 874 AFIAKRW 880 >gi|149408291|ref|YP_001294570.1| hypothetical protein ORF062 [Pseudomonas phage M6] Length = 664 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 101/714 (14%), Positives = 194/714 (27%), Gaps = 132/714 (18%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAE-DVCVILFAFGFDDHPVELWDCVH--DPVMP-QVL 57 + ID ETR DL K G + + +F +D P H +P + + Sbjct: 31 KRVAIDCETR-DPDLRKLGPGAGRRPNSYITGISFAIEDGPGGYLPIRHEGGGNLPLEGV 89 Query: 58 KEALENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARS---NGLPSAL 109 L V N ++ L ++ R+ + ++ Sbjct: 90 LAYLRAQAKVFTGDLVGANLPYDLDFLA-GDGIEFERVRYFRDIQIADPLICELHDSYSM 148 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 +A+ E GK+ + + D K + G+Y + D + Sbjct: 149 QAIAERWGF------HGKD--EALLRAAAVDYGIDPKKDMWMLPAKFVGKYAEEDTRLPL 200 Query: 170 EIFKRLEPLSSKEQEL---------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 I +R E ++ + + RG +D + + + T+ Sbjct: 201 NILRRQEREIDEQDLWGVYNLESKLLPILTGLRRRGVRIDCDRLDMIERWALEKETEALA 260 Query: 221 ELESLTYGLVSSSRCLE-KLKTWLFLETGLHLEDL--TETTCQRVLSSNKKLTPQAIQVF 277 ++ S+T ++ + ++ G+ L + + L + + Sbjct: 261 QVRSITGHRIAVGDVWKPEVIAPALEHIGIKLNKTSQGKPNIDKEL--LGSIDHPVADLL 318 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF-----------LGASRTGRWSGCVFPP 326 + ++ +++ + M +GRL GT + GR S Sbjct: 319 ERARKVNKLRTTFASSVRDHM-VNGRLHGTFNQLRRQKDDESDGTAGAAYGRLSSEHPNL 377 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 Q P + R+ + EG+ D + E Sbjct: 378 QQQPARDE-------------------------FAMMWRAIYLPEEGQHWASNDYSQQEP 412 Query: 387 RVLAWMAGEQWK------LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 R+ A + D Y + A + +R K + L L Sbjct: 413 RMAVHYACLAKDLIGHQAWLSAIEARDKYRNDPNTDNHQMMADMAGIKRKDAKEIYLGLS 472 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y G M GL ++ + Q E A G Sbjct: 473 YGMGGAK---MCRKLGL-------PTMMAVRGPRFQLFDVNSPEGQRLVAEGARRFEAAG 522 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + + K + +L + + Sbjct: 523 PEGQALLDTFDHKVPFIKKLAKACEARAK--------------------------AVGYI 556 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 SGR + + Y + K ++Q S D M+ +A Sbjct: 557 TTLSGRRCRFPKDKDGN-------------YDWTHKGLNRLIQGSSADQTKMAMVACAEA 603 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 G DI++ VHDEI D A+ H+M + LP K + + + Sbjct: 604 GLDIIIQVHDEIAFSVHD--MKEAAEAAHIMRTCTP--LELPSKVDVEIGQSWG 653 >gi|325996723|gb|ADZ52128.1| DNA polymerase I [Helicobacter pylori 2018] Length = 889 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 91/619 (14%), Positives = 192/619 (31%), Gaps = 142/619 (22%) Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEG 126 I+ H+ + LKA + + + R T +LA E + K Sbjct: 395 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNP--------EKVGFDEALKEYLK 446 Query: 127 KELIA-RFCKGETHECLYDRNKPNHREAWRLFGEY----CKGDVTVTREIFKRLEPLSSK 181 ++L++ K + A + EY + +T Sbjct: 447 EDLVSHEKIKDFKAKAEKLELLSMELNALKRLCEYFETGGLEEGLLTLA--------RDI 498 Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E + + +G+ +D L Q E L++++ L + ++L Sbjct: 499 ETPFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVD-FNLNSPKQLGE 557 Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 L+ + GL ++ + +T ++ L P + R ++ L+ + D Sbjct: 558 VLYEKLGLP-KNKSHSTDEKNLLKILDKHPSIPLILEYR-ELNKLFNTYTTPLLRLKDKD 615 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 ++ T G + TGR S QN+P S Sbjct: 616 DKIHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL------------------------ 650 Query: 362 DCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R IAS + L+ D + IE R+LA + ++ ++AF G D+++ T F Sbjct: 651 -LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG-- 707 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 + K++R+I K + G+ Sbjct: 708 -EDLAKEKRSIAKSIN--------------FGLVYGMG---------------------- 730 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + + + + +A+ ++ + + N + + +T + Sbjct: 731 --------SKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSK------- 775 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 GR V+ D Y+ Y + Sbjct: 776 -------------------AFTLLGRYRVF-DFNGVNDYVKGN---------YLREGVNA 806 Query: 601 IVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN 654 I Q + D+L GM+ ++ ++L VHDE++ E + + + ++ Sbjct: 807 IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDE 866 Query: 655 PSWAKGLPLKAEGYESKRY 673 + +PL+ + + R+ Sbjct: 867 V-YPLRVPLETSAFVANRW 884 >gi|325998317|gb|ADZ50525.1| DNA polymerase I [Helicobacter pylori 2017] Length = 889 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 91/619 (14%), Positives = 192/619 (31%), Gaps = 142/619 (22%) Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEG 126 I+ H+ + LKA + + + R T +LA E + K Sbjct: 395 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNP--------EKVGFDEALKEYLK 446 Query: 127 KELIA-RFCKGETHECLYDRNKPNHREAWRLFGEY----CKGDVTVTREIFKRLEPLSSK 181 ++L++ K + A + EY + +T Sbjct: 447 EDLVSHEKIKDFKAKAEKLELLSMELNALKRLCEYFETGGLEEGLLTLA--------RDI 498 Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E + + +G+ +D L Q E L++++ L + ++L Sbjct: 499 ETPFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVD-FNLNSPKQLGE 557 Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 L+ + GL ++ + +T ++ L P + R ++ L+ + D Sbjct: 558 VLYEKLGLP-KNKSHSTDEKNLLKILDKHPSIPLILEYR-ELNKLFNTYTTPLLRLKDKD 615 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 ++ T G + TGR S QN+P S Sbjct: 616 DKIHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL------------------------ 650 Query: 362 DCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R IAS + L+ D + IE R+LA + ++ ++AF G D+++ T F Sbjct: 651 -LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG-- 707 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 + K++R+I K + G+ Sbjct: 708 -EDLAKEKRSIAKSIN--------------FGLVYGMG---------------------- 730 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + + + + +A+ ++ + + N + + +T + Sbjct: 731 --------SKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSK------- 775 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 GR V+ D Y+ Y + Sbjct: 776 -------------------AFTLLGRYRVF-DFNGVNDYVKGN---------YLREGVNA 806 Query: 601 IVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN 654 I Q + D+L GM+ ++ ++L VHDE++ E + + + ++ Sbjct: 807 IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDE 866 Query: 655 PSWAKGLPLKAEGYESKRY 673 + +PL+ + + R+ Sbjct: 867 V-YPLRVPLETSAFVANRW 884 >gi|317013238|gb|ADU83846.1| DNA polymerase I (polA) [Helicobacter pylori Lithuania75] Length = 893 Score = 233 bits (594), Expect = 7e-59, Method: Composition-based stats. Identities = 97/630 (15%), Positives = 195/630 (30%), Gaps = 136/630 (21%) Query: 58 KEALENT------DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALK 110 E LEN V I+ H+ + LKA + + + R T +LA Sbjct: 381 LEFLENAFSQMLQHVQIIGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFD 440 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 V + L + + E I F E A + EY + Sbjct: 441 EVLKEY-LKEEWIP--HEKIKDFKIKSKVE--KLEQLDMELNALKRLCEYF-EKGGLEEN 494 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + + E + + +G+ +D L Q E L++++ L Sbjct: 495 LLSLAK---EVETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVD- 550 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++L L+ + L ++ + +T ++ L P + R ++ Sbjct: 551 FNLNSPKQLGEILYEKLKLP-KNKSHSTDEKNLLKILDKHPSIPLILEYR-ELNKLFNTY 608 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L+ + D ++ T G + TGR S QN+P S Sbjct: 609 TTPLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL------------- 654 Query: 351 TSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R IAS + L+ D + IE R+LA + ++ ++AF G D++ Sbjct: 655 ------------LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIH 702 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 + T F + K++R+I K + G+ Sbjct: 703 LETSKALFG---GDLAKEKRSIAKSIN--------------FGLVYGMG----------- 734 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + + +A+ ++ + + N + + Sbjct: 735 -------------------SKKLSETLNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEIL 775 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 +T + GR V+ D Y+ Sbjct: 776 KTSK--------------------------AFTLLGRYRVF-DFTGANDYIKGN------ 802 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA 644 Y + I Q + D+L GM+ ++ ++L VHDE++ E + + Sbjct: 803 ---YLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALEL 859 Query: 645 -SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + ++ + +PL+ + +KR+ Sbjct: 860 QQEIQRILNDEV-YPLRVPLETSAFVAKRW 888 >gi|219815963|gb|ACL37083.1| DNA polymerase I [uncultured bacterium] Length = 647 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 49/329 (14%), Positives = 96/329 (29%), Gaps = 56/329 (17%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 ID ET S ++ F+ FD + HD Sbjct: 346 KRFAIDTETTSLD----------YRIAEMVGFSVAFDANDAYYIPLAHDYEGAPEQLNRD 395 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 + Q +K LE+ V + H+ ++ + + + + + T++ + Sbjct: 396 AIIQQIKPILEDPSVEKIGHHLKYDAHIFENH-GIHLQ-GWYFDTMLASYVLNAVTTRHG 453 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V L E + K ++ G Y D VT Sbjct: 454 MDDVARVY------------LSHLTTTFEQVAGKGAKQKTFNQIEIETAGHYAAEDAHVT 501 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217 +++ LE + EL + I G +D++ L+ Sbjct: 502 YRLYEVLERKLKEIPELINILHHIEMPVASVLATMEENGIELDLSFLDQLSVDFANTIQN 561 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273 L+ ++ + + +++ LF + GL T +T + VL P Sbjct: 562 LENQIIEIAG-ESFNVGSPKQVGEVLFEKLGLKGGKKTATGQYSTSEAVLEKI--DHPIT 618 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 + R ++ LV+ N D Sbjct: 619 ELIIEYR-GLTKLRSTYTEALVKQANPDT 646 >gi|313673235|ref|YP_004051346.1| DNA polymerase i [Calditerrivibrio nitroreducens DSM 19672] gi|312939991|gb|ADR19183.1| DNA polymerase I [Calditerrivibrio nitroreducens DSM 19672] Length = 791 Score = 233 bits (593), Expect = 9e-59, Method: Composition-based stats. Identities = 83/604 (13%), Positives = 187/604 (30%), Gaps = 146/604 (24%) Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY--D 144 I + LK + + K+ + ++ + + I+ +T + Sbjct: 311 GIKLRYVFD-------------LKNIIKNHKIDTDQLVDFEI-ISWLTDPDTGTIKFTDK 356 Query: 145 RNKPNHREAWRLFGEY--CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 + E E+ + D E++ ++E ++ ++ + G ++ Sbjct: 357 DTLESFFEKILQKKEFILDRMDKYNLWELYNKVE------HKIIHILSEMEQTGILLNSK 410 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 ++ + + ++ + + ++L LF + + + +T Sbjct: 411 QLKETDEKIKELLNNEKKAIDEMLG-EEINLNSPKQLSFVLFEKLKMVPFKKNKTGYSTD 469 Query: 260 QRVLSSNKKLTPQAIQVFN---NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASR 315 + L + L P + S+ + L + ++ S GR+ + G + Sbjct: 470 EDSLRNMIFLNPSYENLLKSILKYREFSKLISTYTSKLSDYIDRSTGRIHTQFKQTG-TA 528 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P+ + +RS ++ EG Sbjct: 529 TGRLSSVNPNLQNIPQKGE-------------------------LGSEIRSAFVSKEGYS 563 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 + D + IE R+LA ++ ++ AFE D++ T + F + +++T+D R I K + Sbjct: 564 FLSIDYSQIELRILAHISDDENLKIAFEQDFDIHTMTAMKVFGLLESEITRDIRRIAKAV 623 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 GL+ + + Sbjct: 624 N--------------FGIIYGLSPYGLS------------------------------RD 639 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + + K + + + V + E+ ++ +G Sbjct: 640 VGIPQSEAKIFIKKYFETYPNVKKYMKEI---VKKAENDGYVTTILN------------- 683 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 R D+ + NT ++ R +Q + DI+ M+ Sbjct: 684 ----------RPRFIPDIKSAN---NTIKQRAERIAINSP------IQGSAADIIKLAMI 724 Query: 616 NATK------AGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGY 668 + K ++L VHDE+V E D + + +M + + +PLK Sbjct: 725 KSDKYLKRMQIDGKLILQVHDELVFEINDKYIDKTSKDIKVIMENI--YPLKVPLKVNLG 782 Query: 669 ESKR 672 SK Sbjct: 783 ISKN 786 >gi|242080755|ref|XP_002445146.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor] gi|241941496|gb|EES14641.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor] Length = 1178 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 101/802 (12%), Positives = 195/802 (24%), Gaps = 192/802 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF----------GFDDHPVELW-DCVHDPV- 52 D E + + VI F+ F + +W D + Sbjct: 432 ACDTE----VANIEAKEETPVGHGEVICFSIYSANSDVQAADFGNGKTCIWVDVLDGGRG 487 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP------ 106 + E+ + V HN F+ V++ + + R T+ LAR Sbjct: 488 VLMEFAPFFEDPSIKKVWHNYSFDNHVIENY-GIKVAGFR-ADTMHLARLWDSSRKIDGG 545 Query: 107 SALKAVGEALK----LSSQKMEEGKELIA--RFCKGETHECLYDRNKPNHR------EAW 154 +L+ + + + + GK + K + + E Sbjct: 546 YSLEGLTNDRRVMDTVPEDLPKPGKISMKTIFGRKKVRKDGSEGKVVSIDPVKELQREDR 605 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSS--------------------KEQELWYLDQTIND 194 L+ Y D T +++ L+ L + Sbjct: 606 ELWICYSSLDSMSTLRLYESLKRKLETRRWVLDGCPRGTMYDFYEQYWCPFGALLVKMET 665 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF----- 244 G VD + + ER + + +++ LF Sbjct: 666 EGMLVDRGYLSEIEKAAIAERELAADKFRKWASKYCPDAKYMNVNSDTQIRQLLFGGIEN 725 Query: 245 -LETGLHLE-DLT-------------ETTCQRVLSSNKKLTPQAIQVFN----------- 278 ++G T + T + + Sbjct: 726 RHKSGETWPQSKTFKVLNEENVATEGKKTSKYRTIKLCSIVEDLKTDMFTPSGWPSASGD 785 Query: 279 -NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR------------------- 318 R A + + T+ + D G+ G S G Sbjct: 786 ALRSLAGKIPTEYIYTMGDIQEDDEDSSGSENPDGDSSYGTAYEAFGGGKNGKEACHAIA 845 Query: 319 -----------WSGCVFPPQNLPRPSRSHE-------ELDQIITHLPTSITSDPDPLQII 360 S + P Q + T + L+ Sbjct: 846 ALCEICSIDSLISNFILPLQGDRISCAEGRIHCSLNINTETGRLSARTPNLQNQPALEKD 905 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R +A+ G L+VAD +E R+LA + + L AF+ G D + T + Sbjct: 906 RYKIRQAFVAAPGNSLIVADYGQLELRILAHLTNCKSMLDAFKAGGDFHSRTAMNMYQHI 965 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 V + K + G L A N Sbjct: 966 RDAVHE------------------KKVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLN 1007 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 F + + + K W V + + E Sbjct: 1008 FSIAYGKTALGLSRDWKVSVKEARDTLKLWYGDRKEVLAWQKSQKKLAREKCEVY----- 1062 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 GRS + ++ + + R Sbjct: 1063 ---------------------TLLGRSRHFPNLT---QFGPGQRGHIERAAINAP----- 1093 Query: 601 IVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTS 653 VQ + D+ M+ + G+ ++L VHDE++ E P ++ E +++ M+ Sbjct: 1094 -VQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPSESAEVAKAIVVECMSK 1152 Query: 654 NP--SWAKGLPLKAEGYESKRY 673 + + L + +K + Sbjct: 1153 PFHGTNILKVDLAVDAKCAKSW 1174 >gi|50365399|ref|YP_053824.1| DNA polymerase I [Mesoplasma florum L1] gi|50363955|gb|AAT75940.1| DNA polymerase I [Mesoplasma florum L1] Length = 895 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 87/655 (13%), Positives = 182/655 (27%), Gaps = 153/655 (23%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKA 82 ++ A + L D ++D L++ N + N+ ++ L Sbjct: 335 HKGQILGLAICNEKGFFYLNDIIND----LELEQFFLNDNFKK---NT-YDIKKTVTLLR 386 Query: 83 CFNLDIPIHRW-ICTLVLARSNGLP-----SALKAVGE-ALKLSSQKMEEGK-----ELI 130 N+ + ++ + L + E L + ++ GK + I Sbjct: 387 NNNIKFSFSSFTYDAMIASYVLNPNVTSRIQNLANIVETELFVEEDELFYGKGVKQNKEI 446 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190 K + + H+ L E + +++++E L + Sbjct: 447 DTASKAKFIVGKLELLYSTHKPIINLLKENNQ------FNLYEKIE------LPLVEVLF 494 Query: 191 TINDRGYCVDVALAHTLNQI---VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + +G +D + E + + + + +++K LF + Sbjct: 495 NMEQKGILIDKVELDKQTARTLFLIEELEEKMKVILKDQISENFNFGSPKQIKELLFDQI 554 Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 GL +T + L L P + +R + ++ L + + D ++ Sbjct: 555 GLPSNKKQ-STDKEALEKIIHLHPVINLLLEHR-KLNKLYSTYLRGFEKFIFDDNKVHTI 612 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 + TGR S QN+ E R Sbjct: 613 FNQ-TLTNTGRLSSSEPNIQNISVKDELQREA-------------------------RKI 646 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTK 426 I++ K D + IE RVLA + E L F+ D++ + F + ++T Sbjct: 647 FISNNDTKFFSFDYSQIELRVLAQLGQEDTLLNIFKNDRDVHAEAARKIFKLEENEEITS 706 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 DQR I GL+ ++ Sbjct: 707 DQRRIA--------------KVFNFGIIYGLSDFGLSN---------------------- 730 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + +R + ++ N L T+ A +RR V Sbjct: 731 --------DLKISIPEAKRFIDDYYLSFPKLMTYKNSLINQA--TVNGYAETYANRRRIV 780 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 ++ ++ + ++ +Q + Sbjct: 781 N------------------------ELASSNFMVKNFGNRI---------AVNMPIQGTA 807 Query: 607 RDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSN 654 DIL M N K + +HDEI+ E +++E ++ M + Sbjct: 808 ADILKVAMNNIHKEFRENNLKSFMTAQIHDEIIFEIFESEESLAVKIVEECMQNA 862 >gi|332674238|gb|AEE71055.1| DNA-directed DNA polymerase I [Helicobacter pylori 83] Length = 893 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 98/663 (14%), Positives = 201/663 (30%), Gaps = 140/663 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78 ++ V+ AF ++D + + L+ V I+ H+ + Sbjct: 351 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQ--HVQIIGHDLKPLLS 407 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGE 137 LKA + + + R T +LA V + + E + K E Sbjct: 408 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEELILHEKIKDFKTKSKAE 467 Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197 E A R EY + + E + + +G+ Sbjct: 468 KSE-----QLDRELNALRRLCEYFEKGGLEEGLLALAR----EVETPFVKVLMDMEFQGF 518 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257 +D L Q E L++++ L + ++L L+ + L ++ + + Sbjct: 519 KIDAPYFKRLEQEFKNELHVLERQILELIGTD-FNLNSPKQLSEILYEKLELP-KNKSHS 576 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T ++ L P + R ++ L+ + D ++ T G + TG Sbjct: 577 TDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATG 634 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKL 376 R S QN+P S +R IAS + L Sbjct: 635 RLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSKEYCL 669 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + D + IE R+LA + ++ + AF G D+++ T F + K++R+I K + Sbjct: 670 LGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSIN 726 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G+ + + Sbjct: 727 --------------FGLVYGMG------------------------------SKKLSETL 742 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + +A+ ++ + + N + + +T + Sbjct: 743 NIPLNEAKSYTEAYFKRFPSIKDYLNRMKEEILKTSK----------------------- 779 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 GR V+ D Y+ Y + I Q + D+L GM+ Sbjct: 780 ---AFTLLGRYRVF-DFTGVNDYIKGN---------YLREGVNAIFQGSASDLLKLGMLK 826 Query: 617 ATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYES 670 ++ ++L VHDE++ E + + + ++ + +PL+ + + Sbjct: 827 VSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YPLRVPLETSAFIA 885 Query: 671 KRY 673 KR+ Sbjct: 886 KRW 888 >gi|317011604|gb|ADU85351.1| DNA polymerase I [Helicobacter pylori SouthAfrica7] Length = 833 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 95/613 (15%), Positives = 194/613 (31%), Gaps = 128/613 (20%) Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 I+ H+ + LKA + + + R T +LA E LK Q+ Sbjct: 337 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKV--GFDEVLKEYLQEDLILH 394 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187 E I F E L N + + EY + + E Sbjct: 395 EKIKDFKTKNKAEQLERLNLELNA--LKRLCEYFEKGGLEENLLSLAR----GIEMPFMK 448 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + +G+ +D L Q E L++++ L + ++L L+ + Sbjct: 449 VLINMEFQGFKIDAPYFKRLEQEFKDELKVLERQILDLIG-EDFNLNSPKQLGEVLYEKL 507 Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 L ++ + +T ++ L P + R ++ + L+ + D ++ T Sbjct: 508 NLP-KNKSHSTDEKSLLKIMDKHPSISLILEYR-ELNKLSNTYTTPLLRLKDKDDKIHTT 565 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 G + TGR S QN+P S +R Sbjct: 566 FIQTG-TATGRLSSHSPNLQNIPVRSSKGL-------------------------LIRKG 599 Query: 368 VIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 I+S + L+ D + IE R+LA + ++ ++AF G D+++ T F + K Sbjct: 600 FISSSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAK 656 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 ++R+I K + G+ Sbjct: 657 EKRSIAKSIN--------------FGLVYGMG---------------------------- 674 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + + + + +A+ ++ + + N + + +T + Sbjct: 675 --SKKLSETLNIPLSEAKSYIEAYFKRFPSIKDYLNRMREEILKTSK------------- 719 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 GR V+ D Y+ Y + I Q + Sbjct: 720 -------------AFTLLGRYRVF-DFNGVNDYVKGN---------YLREGVNAIFQGSA 756 Query: 607 RDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKG 660 D+L GM+ ++ ++L VHDE++ E + + + ++ +A Sbjct: 757 SDLLKLGMLKVSERFKNDSSVRLLLQVHDELIFEIEEKNALKLQQEIQGILNHEV-YALR 815 Query: 661 LPLKAEGYESKRY 673 +PL+ + +KR+ Sbjct: 816 VPLETSAFIAKRW 828 >gi|217033899|ref|ZP_03439323.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10] gi|216943662|gb|EEC23107.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10] Length = 891 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 93/667 (13%), Positives = 202/667 (30%), Gaps = 148/667 (22%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78 ++ V+ AF ++D + + L++ + + H+ + Sbjct: 349 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFSQILQHAQI--IGHDLKPLLS 405 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL----KLSSQKMEEGKELIARF 133 LKA + + + R T +LA V + + +K+++ K Sbjct: 406 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWIPHEKIKDFK------ 459 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193 + A + EY + + E + + Sbjct: 460 ---TKSKAEKLEQLDRELHALKRLCEYFEKGGLEEGLLALAR----EVETPFMKVLMGME 512 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 +G+ +D L Q E L++++ L + ++L L+ + L + Sbjct: 513 FQGFKIDAPYFKRLEQEFKNELHVLERQILELIGAD-FNLNSPKQLSEILYEKLELPQ-N 570 Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 + +T ++ L P + R ++ L+ + D ++ T G Sbjct: 571 KSRSTDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG- 628 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 + TGR S QN+P S +R IAS + Sbjct: 629 TATGRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSK 663 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 L+ D + IE R+LA + ++ + AF G D+++ T F + K++R+I Sbjct: 664 EYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIA 720 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G+ + Sbjct: 721 KSIN--------------FGLVYGMG------------------------------SKKL 736 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + +A+ ++ + + N + + +T + Sbjct: 737 SETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK------------------- 777 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 GR V+ D Y+ Y + I Q + D+L Sbjct: 778 -------AFTLLGRYRVF-DFTGANDYIKGN---------YLREGVNAIFQGSASDLLKL 820 Query: 613 GMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 GM+ ++ ++L VHDE++ E + + + ++ + +PL+ Sbjct: 821 GMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YPLRVPLETS 879 Query: 667 GYESKRY 673 + +KR+ Sbjct: 880 AFIAKRW 886 >gi|312880258|ref|ZP_07740058.1| DNA polymerase I [Aminomonas paucivorans DSM 12260] gi|310783549|gb|EFQ23947.1| DNA polymerase I [Aminomonas paucivorans DSM 12260] Length = 844 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 90/552 (16%), Positives = 168/552 (30%), Gaps = 128/552 (23%) Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-LSSKEQELW 186 +L+ + E P + L C+ ++ + P + + L Sbjct: 394 KLVHYALHPDRGESAGRGLPPGTENPFALLETLCEE------PLWPSVAPLVRDLDLPLA 447 Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + + RG VD +L+ ++ +L+ + + V + + +++ LF Sbjct: 448 PVLARMESRGIGVDEGALASLDVRLEGRSRELEALVRAEAGEEV-NLQSPKQMAALLFER 506 Query: 247 TGLHLEDLTE---TTCQRVLSSNKKLTP---QAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 GL T+ +T VL KL + + ++ + ++ + Sbjct: 507 LGLPPLKKTKTGFSTDVGVLEELAKLPDPLSRVPRHLLEHREVAKLRTGFVQPFLKQAHR 566 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 DG + A+ TGR S QNLP Sbjct: 567 DGGHIYSTFEQTATGTGRLSSRDPNVQNLP-------------------------VFGEW 601 Query: 361 SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 ++ R C++ S + + AD + IE RVLA + GE ++AFE G D++ T + + V Sbjct: 602 AEAFRRCLVPTSPKDRFLSADYSQIELRVLAHLCGEPRLVQAFEAGRDIHRETASWVYGV 661 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 A +V+ +Q + Sbjct: 662 AAEEVSAEQ--------------------------------------------RRFAKVV 677 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 NF + A ++ + RV E L + + G + Sbjct: 678 NFGLLYGMSAHGLAQRMGVGRPEAAQIIDRYFSVLPRVREY---LEETVREAKARGYTVS 734 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 GR G + L R Sbjct: 735 L-----------------------FGRVRPL---GEVSTVEGRGGGALDRVA------VN 762 Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652 + +Q+ + DI M++ + +VL VHD +VC+ P E AS+L +M Sbjct: 763 SPIQSTAADIAKVAMVDLERRLRGSGLPVRLVLQVHDSLVCQVPQEALEEAASLLRDVME 822 Query: 653 SNPSWAKGLPLK 664 + +PL+ Sbjct: 823 RAVT--LSVPLE 832 >gi|302546246|ref|ZP_07298588.1| DNA polymerase I [Streptomyces hygroscopicus ATCC 53653] gi|302463864|gb|EFL26957.1| DNA polymerase I [Streptomyces himastatinicus ATCC 53653] Length = 477 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 78/506 (15%), Positives = 139/506 (27%), Gaps = 121/506 (23%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + G D + Q + +E + + ++L Sbjct: 76 DVELPTSELLARLERSGIAADRDWLDRMEQQFAGAVQQAVKEAHAAVGH-EFNLGSPKQL 134 Query: 240 KTWLFLETGLHLEDLTETT---CQRVLSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLV 295 + LF E GL T+T L+ + + +R + L+ Sbjct: 135 QEVLFGELGLPKTKKTKTGYTTDADALAWLAGQTDHELPVIMLRHREQARLRST-VEGLI 193 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + ++ GR+ T A+ TGR S QN+P + Sbjct: 194 KTISPGGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEGRA----------------- 235 Query: 356 PLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R + EG + L+ AD + IE RV+A ++ + ++AF +GEDL+ T + Sbjct: 236 --------IRRGFVVGEGFESLMTADYSQIELRVMAHLSEDDGLIEAFTSGEDLHTTVAS 287 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 + F VA ++V + R K M GL+ + Sbjct: 288 QVFGVAKSEVDPEMRRKIKAMSY--------------GLAYGLSAFGLSGQ--------- 324 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 R+ + ++ V + + + Sbjct: 325 ---------------------LGIGADEARRLMDTFFERFGGVRDYLQRVVEEAR----- 358 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 GR D+ ++ R Sbjct: 359 ---------------------AIGYTETMLGRRRYLPDLTSDN---RQRREMAERMALNA 394 Query: 595 GKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY 648 +Q + DI+ M+ A ++L VHDEIV E + L Sbjct: 395 P------IQGTAADIVKIAMLKVDAALTAGELSSRMLLQVHDEIVLEIAPGERERVEELV 448 Query: 649 -HLMTSNPSWAKGLPLKAEGYESKRY 673 M PL + Sbjct: 449 RREMAGAFQ--LRAPLDVSVGVGADW 472 >gi|297380674|gb|ADI35561.1| DNA polymerase I [Helicobacter pylori v225d] Length = 827 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 92/667 (13%), Positives = 202/667 (30%), Gaps = 148/667 (22%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78 ++ V+ AF ++D + + L++ + + H+ + Sbjct: 285 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHACI--IGHDLKPLLS 341 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL----KLSSQKMEEGKELIARF 133 LKA + + + R T +LA V + + +K+++ K Sbjct: 342 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWIPHEKIKDFK------ 395 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193 + A + EY + + E + + Sbjct: 396 ---TKSKVEKLEQLDMELNALKRLCEYFEKGGLEEGLLALAR----EVETPFMKVLMGME 448 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 +G+ +D L Q E L++++ L + ++L L+ + L + Sbjct: 449 FQGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVD-FNLNSPKQLSEILYEKLELPQ-N 506 Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 + +T ++ L P + R ++ L+ + D ++ T G Sbjct: 507 KSRSTDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG- 564 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 + TGR S QN+P S +R IAS + Sbjct: 565 TATGRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSK 599 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 L+ D + IE R+LA + ++ + AF G D+++ T F + K++R+I Sbjct: 600 EYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIA 656 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G+ + Sbjct: 657 KSIN--------------FGLVYGMG------------------------------SKKL 672 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + +A+ ++ + + L++ E+ ++ KA R V Sbjct: 673 SETLNIPLNEAKSYIEAYFKRFPSIKDY---LNRMKEEILKTSKAFTLLGRYRVFDFTGA 729 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 D+ Y + I Q + D+L Sbjct: 730 NDRIKGD---------------------------------YLREGVNAIFQGSASDLLKL 756 Query: 613 GMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 GM+ ++ ++L VHDE++ E + + + ++ + + +PL+ Sbjct: 757 GMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNNEV-YPLRVPLETS 815 Query: 667 GYESKRY 673 + + R+ Sbjct: 816 AFVANRW 822 >gi|298346797|ref|YP_003719484.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] gi|298236858|gb|ADI67990.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] Length = 932 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 101/652 (15%), Positives = 189/652 (28%), Gaps = 142/652 (21%) Query: 53 MPQVLKE----ALENT---DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 +P L L + D +++ R L A ++ +L Sbjct: 389 VPDELTPQTEHLLCDALAGDRKKTVYDAKSLRHALHAH-GWELH-GAVTDIKMLDYLVNP 446 Query: 106 PSALKAVGEALK-LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW------RLFG 158 K L +++E I++ + T + + + + + W + Sbjct: 447 DGNRTKFAGVTKRLLGWEIDEKPSDISKISEQMTLDLGVELDGNSSAQPWPQTLINQAIY 506 Query: 159 EYCKGDVTVTRE---IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 Y + T E F++++ L E L Y+ + + G +D Q + E Sbjct: 507 AYALLQMQPTLEQLAHFRQVDGLLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEV 566 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNK--KLT 270 Q V + ++L+ LF + L T+T + L Sbjct: 567 AMAQQSAFDSIGREV-NLSSPKQLQEVLFTQLELPKTKKTKTGYTTDAKALEELARYNPH 625 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 P + +R R + + L E + DGR+ T A+ TGR S QN+P Sbjct: 626 PFLEALLYHRDRIKLLQI--VRNLRERVADDGRIHTTFGQTVAA-TGRLSSIDPNLQNIP 682 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVL 389 + +R + + L+ AD + IE R++ Sbjct: 683 ARTVDG-------------------------QKIREAFVPQKPYAALMTADYSQIEMRIM 717 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++G++ L AF +GEDL+ + A + V P +VT QR+ K L Y Sbjct: 718 AHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKATSYGLAYG-----LS 772 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 L +++ Sbjct: 773 AYGLAAQL---------------------------------------NISQRDAKQLMDT 793 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + ++ +V E N++ GR Sbjct: 794 YFERFGKVREYLNQIVATA--------------------------TRVGYTETMRGRRRY 827 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYD 623 ++ + R +Q + D++ M+ + Sbjct: 828 LPELRSTN---RNVADNARRAALNAP------IQGSAADLMKAAMLQVDADLRQEQLQSR 878 Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRYR 674 ++L VHDE+V E + L MT +PL+ +R Sbjct: 879 VLLQVHDELVLEVAPGETERLETLVRQAMTGVAK--LRVPLEVSVGIGPNWR 928 >gi|254779982|ref|YP_003058089.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed)) [Helicobacter pylori B38] gi|254001895|emb|CAX30145.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed)) [Helicobacter pylori B38] Length = 889 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 98/664 (14%), Positives = 202/664 (30%), Gaps = 144/664 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78 ++ V+ AF ++D + + L+ V IV H+ + Sbjct: 349 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFLKMLQ--HVQIVGHDLKPLLS 405 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEGKELI-ARFCKG 136 LKA + + + R T +LA E + K +ELI K Sbjct: 406 FLKAKYQVPLENIRIQDTQILAFLKNP--------EKVGFDEVLKEYLKEELIPHEKIKD 457 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + A + EY + + E + + +G Sbjct: 458 FKTKAEKLELLSVELNALKRLCEYFEKGGLEEGLLALAK----EIETPFMKVLMGMEFQG 513 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 + +D L Q E L++++ L + ++L L+ + L ++ + Sbjct: 514 FKIDAPYFKRLEQEFKNELHVLERQILDLIGVD-FNLNSPKQLSEVLYEKLELP-KNKSH 571 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T ++ L P + R ++ L+ + D ++ T G + T Sbjct: 572 STDEKNLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TAT 629 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375 GR S QN+P S +R IAS + Sbjct: 630 GRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSKEYC 664 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ D + IE R+LA + ++ ++AF G D+++ T F + K++R+I K + Sbjct: 665 LLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---GDLAKEKRSIAKSI 721 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G+ + + Sbjct: 722 N--------------FGLVYGMG------------------------------SKKLSET 737 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + +A+ ++ + + N + + +T + Sbjct: 738 LNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK---------------------- 775 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 GR V+ D Y+ Y + I Q + D+L GM+ Sbjct: 776 ----AFTLLGRYRVF-DFNGVNDYIKGN---------YLREGVNAIFQGSASDLLKLGML 821 Query: 616 NATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYE 669 ++ ++L VHDE++ E + + + ++ + +PL+ + Sbjct: 822 KVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFV 880 Query: 670 SKRY 673 + R+ Sbjct: 881 ANRW 884 >gi|317178174|dbj|BAJ55963.1| DNA polymerase I [Helicobacter pylori F16] Length = 893 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 93/667 (13%), Positives = 202/667 (30%), Gaps = 148/667 (22%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78 ++ V+ AF +D + + L++ + + H+ + Sbjct: 351 KEKKVLALAFLLEDQ-GYFLPLEEALFSPFSLEFLQNAFSQILQHAQI--IGHDLKPLLS 407 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL----KLSSQKMEEGKELIARF 133 LKA + + + R T +LA V + + +K+++ K Sbjct: 408 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWIPHEKIKDFK------ 461 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193 + A + EY + + E + + Sbjct: 462 ---TKSKAGKLEQLDMELNALKRLCEYFEKGGLEEGLLALAR----EVETPFVKVLMGME 514 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 +G+ +D L Q E L++++ L + ++L L+ + L ++ Sbjct: 515 FQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVD-FNLNSPKQLSEILYEKLELP-KN 572 Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 + +T ++ L P + R ++ L+ + D ++ T G Sbjct: 573 KSHSTDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG- 630 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 + TGR S QN+P S +R IAS + Sbjct: 631 TATGRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSK 665 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 L+ D + IE R+LA + ++ + AF G D+++ T F + K++R+I Sbjct: 666 EYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIA 722 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G+ + Sbjct: 723 KSIN--------------FGLVYGMG------------------------------SKKL 738 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + +A+ ++ + + N + + +T + Sbjct: 739 SETLNIPLNEAKSYTEAYFKRFPSIKDYLNRMKEEILKTSK------------------- 779 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 GR V+ D Y+ Y + I Q + D+L Sbjct: 780 -------AFTLLGRYRVF-DFTGVNDYIKGN---------YLREGVNAIFQGSASDLLKL 822 Query: 613 GMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 GM+ ++ ++L VHDE++ E + + + ++ + +PL+ Sbjct: 823 GMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YPLRVPLETS 881 Query: 667 GYESKRY 673 + +KR+ Sbjct: 882 AFIAKRW 888 >gi|256825133|ref|YP_003149093.1| DNA polymerase I [Kytococcus sedentarius DSM 20547] gi|256688526|gb|ACV06328.1| DNA polymerase I [Kytococcus sedentarius DSM 20547] Length = 904 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 91/622 (14%), Positives = 168/622 (27%), Gaps = 153/622 (24%) Query: 86 LDIPIHRW-ICTLVLARSNGL---PSALKAVGEALKLSSQKMEE----GKELIARFCKGE 137 + + + + T + A L + E G+ L Sbjct: 397 IGLRLETVAVDTALAAYLVRPDQRSYDLADLCLRHLQRELPTAEDSGPGEALFDASEVDG 456 Query: 138 THECLYDRNKPNHRE-----AWRLFGEYCKGD---VTVTREIFKRLEPLSSKEQELWYLD 189 + + L + + D + R++ E L Sbjct: 457 STDGLTTAARTAALRAAAVRELAPVLQQEVEDIGAAGLERDL----------ELPLARHL 506 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G VD L + + + + + ++L+ LF GL Sbjct: 507 VAMEATGIAVDTDRLDALEGEFADQVAQATADAHAAIDDPGVNLGSPKQLQEVLFERLGL 566 Query: 250 HLEDLTETT---CQRVLSSNKKLTPQ-------AIQVFNNRMRASRSAVLKLNTLVEAMN 299 T+T L + + + +R +R + L +A++ Sbjct: 567 PKTKKTKTGYTTDADALVWLRAQASEGSTAETFLEALLRHR-DVTRLRST-VQGLQKAVD 624 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 +DGR+ T Q A+ TGR S QN+P + + Sbjct: 625 ADGRIHTTYQQTIAA-TGRLSSVDPNLQNIPIRTEAGRR--------------------- 662 Query: 360 ISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R + G L+ AD + IE R++A ++G++ ++AF GEDL+ ++ F Sbjct: 663 ----IREVFVVGSGFDHLMSADYSQIEMRIMAHLSGDEGLIEAFRAGEDLHRYVGSKVFQ 718 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 VAP +VT + RA K M L Y + L Sbjct: 719 VAPEEVTAEMRAKVKAMSYGLAYG-----LSSFGLSKQL--------------------- 752 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 + + + V + + +T Sbjct: 753 ------------------GITPAEASALMDEYFARFGGVRDYLRAVVDEARRT------- 787 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 GR D+ + R Sbjct: 788 -------------------GYTETMLGRRRPLPDLASTN---RQRREMAERMALNAP--- 822 Query: 599 ENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLM 651 +Q + D++ M+ A ++L VHDE+V E + L M Sbjct: 823 ---IQGSAADVMKLAMLKVEDALDAQRLASRVLLQVHDELVLEVAPDEGSAVEALVREAM 879 Query: 652 TSNPSWAKGLPLKAEGYESKRY 673 S +PL + + Sbjct: 880 GSALD--LDVPLDVSIGTGRSW 899 >gi|188528242|ref|YP_001910929.1| DNA polymerase I (polA) [Helicobacter pylori Shi470] gi|188144482|gb|ACD48899.1| DNA polymerase I (polA) [Helicobacter pylori Shi470] Length = 893 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 94/663 (14%), Positives = 195/663 (29%), Gaps = 140/663 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78 ++ V+ AF ++D + + L++ + + H+ + Sbjct: 351 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLS 407 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGE 137 LKA + + + R T +LA V E I F Sbjct: 408 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVVREYLKEEL---IPHETIKDF--KT 462 Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197 A + EY + + E + + +G+ Sbjct: 463 KSRVEKLEQLDMELNALKRLCEYFEKGGLEEGLLALAR----EVETPFMKVLMGMEFQGF 518 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257 +D L Q E L++++ L + ++L L+ + L + + + Sbjct: 519 KIDAPYFKRLEQEFKDELHVLERQILDLIGVD-FNLNSPKQLSEILYEKLELPQ-NKSRS 576 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T ++ L P + R ++ L+ + D ++ T G + TG Sbjct: 577 TDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATG 634 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKL 376 R S QN+P S +R IAS + L Sbjct: 635 RLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSKEYCL 669 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + D + IE R+LA + ++ + AF G D+++ T F + K++R+I K + Sbjct: 670 LGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSIN 726 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G+ + + Sbjct: 727 --------------FGLVYGMG------------------------------SKKLSETL 742 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + +A+ ++ + + N + + +T + Sbjct: 743 NIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK----------------------- 779 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 GR V+ G N Y + I Q + D+L GM+ Sbjct: 780 ---AFTLLGRYRVFDFTGANDHIKGN----------YLREGVNAIFQGSASDLLKLGMLK 826 Query: 617 ATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYES 670 ++ ++L VHDE++ E + + + ++ + +PL+ + + Sbjct: 827 VSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFMA 885 Query: 671 KRY 673 KR+ Sbjct: 886 KRW 888 >gi|153953306|ref|YP_001394071.1| DNA polymerase I [Clostridium kluyveri DSM 555] gi|219853937|ref|YP_002471059.1| hypothetical protein CKR_0594 [Clostridium kluyveri NBRC 12016] gi|146346187|gb|EDK32723.1| PolA [Clostridium kluyveri DSM 555] gi|219567661|dbj|BAH05645.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 880 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 90/637 (14%), Positives = 185/637 (29%), Gaps = 135/637 (21%) Query: 45 WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV---LKACFNLDIPIHRWICTLVLAR 101 + + K EN+ ++ V ++ V + + + + + A Sbjct: 367 IYDENKIKAVETAKMLFENSSLSKV----SYDVKVPCSILHRMGIKL-LGIEFDIKIAAY 421 Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + KE + E +C R L + Sbjct: 422 LMDPARTNYEL----------PDIIKEYLNIEISEEREDCFIKETLLFSRLYSTLKKKIS 471 Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + EQ L ++ ++ G+ VD + + +E K+ +E Sbjct: 472 DSSMDKLLY---------EVEQPLTFVLASMECEGFKVDKDKLTEMEEKFKIEIDKVQKE 522 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278 + L+ + ++L LF + L + T+ +T VL P ++ Sbjct: 523 IYFLSE-EEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNADVLERLHGKHPVIEKIIY 581 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ + L + DG++ + TGR S QN+P +E Sbjct: 582 YRQ-LTKLYSTYIEGLKGVIEEDGKIHSNFNQTVTT-TGRLSSTEPNLQNIPIKYEMGKE 639 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQW 397 +R I ++ AD + IE RVLA ++G++ Sbjct: 640 -------------------------IRKIFIPDNRDCVILSADYSQIELRVLAHISGDEN 674 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + AF D++ T + FNV +VT QR+ K + + Y G + L Sbjct: 675 LINAFINHNDIHTKTASEVFNVPLGEVTSTQRSNAKAVNFGIVYGIG-----DFSLARNL 729 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 N+ ++ E++ + + + + ++ + R + + + Sbjct: 730 NIPRKEAKSYIDAYFEKYPKVKLYMNDIVKQAEKNFYVTTILNR--RRFIPEIKSSNKII 787 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 L + T G A K V + KD N Sbjct: 788 KALG---ERFAMNTPIQGSAADIIKIAMVNVFNRLKDNNFKSK----------------- 827 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH-DEIVCET 636 I+ + +VL V+ DE+ Sbjct: 828 -------------------------------II----LQVHDE---LVLNVYKDEL---- 845 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + ++ M + +PL+ + + Sbjct: 846 ----KDVKDIVKEEMENVFK--LKVPLEVDISIGDNW 876 >gi|331703661|ref|YP_004400348.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802216|emb|CBW54370.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 911 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 96/682 (14%), Positives = 191/682 (28%), Gaps = 135/682 (19%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-------- 58 D+E S L + + +I + D + + Sbjct: 320 DYE-DSINYLYVESLEEDYHKDKIIGIGISNNKGN-FYLDFKNKAQQLSFFEDTTLSSTN 377 Query: 59 ----EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 E L N ++ ++ +LK + + +V S + Sbjct: 378 SLFEEFLNNPNLKKYTYDIKKTTYLLKNHKYNVLASNFDFDFMVACYSLNANVV-SDLSS 436 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 +KL + E + + F KG D + + + + + D + + Sbjct: 437 QIKL-VDNLVELETIDEIFGKGVKKNPDIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTN 495 Query: 175 LEP-LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV--- 230 + L + I +G +D Q + + ++ +++ L + Sbjct: 496 TYDLYLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEGQMKILVAEEIDNN 555 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++++ LF + L + TT + VL P + +R + ++ Sbjct: 556 FNFSSPKQIQELLFDKLKLPNLEKG-TTSKEVLEKLITYHPIINLLLEHR-KYTKLYTTY 613 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L + + D ++ + TGR S QN+ +E Sbjct: 614 LKGFEKFIFDDNKVHTIFN-HTLTNTGRLSSSYPNIQNISIRDNEQKE------------ 660 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 VR I + K + D + IE RVLA M+ E + AF D+++ Sbjct: 661 -------------VRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADIHL 707 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 FN++ Q+T +QR I KV GL Sbjct: 708 QAAKLIFNLSDDQITSEQRRIAKVFN--------------FGILYGLTDFGL-------- 745 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 A + +++ K + + + + E Sbjct: 746 ----------------------ASDLNISVNQAKQMIKDYYSAFPSLLDFK---EKQVEI 780 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 G S R ++ + + +++ Sbjct: 781 ATSQGYITTL-----------------------SNRRRYINELNSTNHNIRQFGKRI--- 814 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644 +Q + DIL M++ K IV +HDEI+ E D Sbjct: 815 ------AVNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVDDNQLEQT 868 Query: 645 SML-YHLMTSNPS-WAKGLPLK 664 + H + + L LK Sbjct: 869 KKIVVHELENALEKLFLDLNLK 890 >gi|184155793|ref|YP_001844133.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956] gi|183227137|dbj|BAG27653.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956] Length = 886 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 89/650 (13%), Positives = 173/650 (26%), Gaps = 119/650 (18%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 F D L D + LK+ LE+ V N+ + L +D+ Sbjct: 341 GFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVERDVFNAKAQLVGLHR-LGVDLAGVD- 398 Query: 94 ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 L+ + +G L + + + + D H Sbjct: 399 FDLLLASYLLNTSENANDLG-VLAAAHDYHQVQTDEEVYGKGAKRAIPADDEVFFTHLAK 457 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 K + ++L E+ L + + G VD A + + Sbjct: 458 KARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGIHVDAATLKEMGSKLVE 517 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT 270 +L+Q + + ++L LF + L + T+ +T VL Sbjct: 518 REAELEQAIYQEAG-EEFNINSPKQLGVILFEKMKLPVIKKTKTGYSTAVDVLEKLADRA 576 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 P + R S+ + L++ ++ D + T + TGR S QN+P Sbjct: 577 PIVQDILAYRQ-ISKLQSTYITGLLKVIHQDDQKIHTRYLQTLTATGRLSSVDPNLQNIP 635 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVL 389 +R S G K+ +D + +E RVL Sbjct: 636 VRLEEGR-------------------------QIRRAFTPSAPGWKIFSSDYSQVELRVL 670 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAF 448 A + G++ F G+D++ T R F++ + +VT + R K + + Y Sbjct: 671 AHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYGIS---- 726 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 ++++ S +E+ E + + E + + Sbjct: 727 -DYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR------- 778 Query: 509 AWRQKHSRV--SELWNE--LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 R+ + + T G A K + Sbjct: 779 --RRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAMIR----------------- 819 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 + R ++ Sbjct: 820 --------------MEKALKERGLRARM---------------------LLQIHDE---- 840 Query: 625 VLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E P + ++ +M S +PLK E + Sbjct: 841 -------LVFEAPEEEIAILEELVPSIMDSAVK--LDVPLKVESKSGATW 881 >gi|38233736|ref|NP_939503.1| DNA polymerase I [Corynebacterium diphtheriae NCTC 13129] gi|38199997|emb|CAE49666.1| DNA polymerase I [Corynebacterium diphtheriae] Length = 899 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 94/630 (14%), Positives = 180/630 (28%), Gaps = 127/630 (20%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113 Q + + + H + V ++ T + + Sbjct: 381 QAFAQWIASDS-PKYLHEAK---AVFHMLAGRGYTLNGIEHDTAIAGYLLRPGQRTYDL- 435 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIF 172 K + L + G + + P+ +E + ++T ++ Sbjct: 436 --------KDVYQRHLQRQLGGGSSESGQLSLLDAPDAQELVDSAVAILELSKSLTAQLQ 487 Query: 173 KR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E E L + + G CVDVA I + + + L Sbjct: 488 AIDAYELYREMELPLVGVLARMEATGICVDVATLREQRDIFVEQVKEEESAARELAGDET 547 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK--KLTPQAIQVFNNRMRASR 285 + ++L+ LF GL T+ +T + + S P + +R + Sbjct: 548 LNLSSPKQLQVVLFDTLGLPKTKKTKTGYSTAAKEIESLAVKNPHPFLDHLLAHR-EFQK 606 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 L+ L++A+ DGR+ T A TGR S QN+P + + + Sbjct: 607 MKTT-LDGLIKAVGDDGRIHTTFNQTVA-STGRLSSTEPNLQNIPVRTPAGRK------- 657 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFET 404 +RS + +G K L+ AD + IE RV+A ++ + ++A++T Sbjct: 658 ------------------IRSAFVVGQGYKSLLTADYSQIEMRVMAHLSEDPGLIEAYQT 699 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GEDL+ ++ F+V QVT + R K M L Y + LN+ Sbjct: 700 GEDLHNFVGSKVFDVPVDQVTPELRRRVKAMSYGLVYG-----LSAFGLSQQLNIPAGEA 754 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 V S E + + + + E + G R+ +S Sbjct: 755 KVIMESYFERFGGVKRYLDQVVEQARKDGFTSTLFGR---------RRYLPELSSDNRVA 805 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 + E+ + Sbjct: 806 RENAERAA----------------------------------------LNAPIQGTAADI 825 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644 ++ EN Q+ ++ +V E ++ Sbjct: 826 IKIAMLRVDARLTAEN-CQS-------RVLLQVHDE-----------LVLEVASGEQEKV 866 Query: 645 SMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 L M + S +PL+ + Sbjct: 867 QQLVEEEMDAAIS--LRVPLEVSAGVGTNW 894 >gi|323451403|gb|EGB07280.1| hypothetical protein AURANDRAFT_27651 [Aureococcus anophagefferens] Length = 831 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 113/807 (14%), Positives = 194/807 (24%), Gaps = 236/807 (29%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFA------FGFDD---HPVELWDCVHDPVMPQ 55 +D E IDL++ G + V F F +D DCV D + Sbjct: 101 AVDTE-VDDIDLSREGP---VGNGRVTCFTVYSGPDFSYDGEAAGKALFVDCV-DAAVLD 155 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP-------- 106 V + V HN F+R V++ + + T+ +AR + Sbjct: 156 VFAPWFADESRRKVWHNYGFDRHVVENH---GLACRGFAGDTMHMARLHDSSRLRTHGGD 212 Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGE----THECLYDRNKPNHREAW------- 154 +L+A+ L + + K L F + R+ Sbjct: 213 GYSLEALSRDLISAGEAKVSMKALFPEFFRKTAFADRANGSASRDAARRGLDILRMQTDD 272 Query: 155 ---RLFGEYCKGDVTVTREIF-------------------KRLEPLSSKEQELWY----- 187 F Y D T ++ R + + Sbjct: 273 ATRDAFVCYAAYDAKSTWQVHDALRRRLERQAWAPMTDDPPRSPETPKTMWDFYERYFVP 332 Query: 188 ---LDQTINDRGYCVD-----VALAHTLNQIVDVERTKLDQELESLTYGL--VSSSRCLE 237 + + G VD + + + + Sbjct: 333 FGKVLTDMEAAGIYVDAASHLTDVEKAATADKAAALKTFRDWAVERMGPDGALLNPASSK 392 Query: 238 KLKTWLF-------------------------------------------LETGLHLEDL 254 +++T LF GL Sbjct: 393 QIQTLLFGGAMNQKTGEYLETEREFDVDLPPELLPDGDDGASDRTRKLLVRSVGLTPTKY 452 Query: 255 T----ETTCQRVLSSNK----KLTPQAI-------------------QVFNNRMRASRSA 287 T + VL P N Sbjct: 453 TTSGAPSCTADVLRELAGRPTDDPPVYGAAHAGFGGGPAGEEACVALDALCNMGSIDTML 512 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 +N L + + R+ +L + TGR S QN P Sbjct: 513 NTFINPLRLLADDESRVHCSLNLN--TETGRLSSRRPNLQNQP----------------- 553 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 L+ +R A EG LVVAD +E R+LA +A + L AF G Sbjct: 554 --------ALEKDQYFIRKAFRAKEGCALVVADYGQLELRLLAHVARCESMLVAFREGGC 605 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + T F+ R + + L + + Sbjct: 606 FHSRTAVGMFD--------HVREAVESGAVLLEKGSSP------------EDSDKPLVKD 645 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 ++ NF + A + + + +AW V + Sbjct: 646 VYASERRRAKTLNFSIAYGKTAHGLAKDWGVKQEEAQDMLRAWYDDRPEVEAWQK---RT 702 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 G GR D+ L + Sbjct: 703 IADAKRTGYTTTL-----------------------MGRRRNLPDILEKNRALQG---RG 736 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDE 641 R +Q + D++ M+ + GY ++L +HDE++ E P+ + Sbjct: 737 ARAAINTP------IQGSAADVVMMAMLKIAESKTLKDLGYTLLLQIHDEVILEGPEQHK 790 Query: 642 FNA-SMLYHLMTSNPSWAKGL-PLKAE 666 A + + LM + GL PL + Sbjct: 791 EAALAEVTKLMEAPFD-GIGLDPLHVD 816 >gi|111018004|ref|YP_700976.1| DNA polymerase I [Rhodococcus jostii RHA1] gi|110817534|gb|ABG92818.1| DNA-directed DNA polymerase I [Rhodococcus jostii RHA1] Length = 914 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 110/659 (16%), Positives = 190/659 (28%), Gaps = 124/659 (18%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNL 86 V A D + L + L + D H + + L Sbjct: 362 GDVTAIAVAAADGEGAYIATASATPEDEKALGDWLADADQPKALHEAKWAMHAL-RGRGW 420 Query: 87 DIPIHRWICTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECL 142 + T + A L + L+ + E G+E ++ Sbjct: 421 VL-GGLTSDTALAAYLVRPGQRTFNLDDLSLRYLRRELRVEETGEEQLSLL----DDADQ 475 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 D + + + LS E L + I G VD Sbjct: 476 VDAEAAETEILSARAVLDLAAALDTELDNIESTALLSEMELPLLEVLADIEASGIAVDGT 535 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---C 259 H L E + + + + + ++L+ LF E + T+T Sbjct: 536 HLHDLQSRFAAEVSAAAEAAYGVIGKQI-NLGSPKQLQVVLFDELEMPKTKKTKTGYTTD 594 Query: 260 QRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 L + + P + +R A+R V ++ L++ + DGR+ T A+ TG Sbjct: 595 AEALQNLFEKTSHPFLEHLLAHR-DATRLKVT-VDGLLKTVAEDGRIHTTFNQTVAA-TG 651 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KL 376 R S QN+P + + +R + EG L Sbjct: 652 RLSSTEPNLQNIPVRTDAGR-------------------------QIRDGFVVGEGYDSL 686 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R++A ++G++ ++AF TGEDL+ AR+F V +VT + R K M Sbjct: 687 LTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGARAFGVPIEEVTPELRRRVKAMS 746 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 L Y L ++T + + + ++ + E + Sbjct: 747 YGLAYG-----LSAFGLAAQLKISTEEAKSQMEAYFARFGGVRDYLHEVVEQARKDGYTS 801 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 +RR +P + + Sbjct: 802 TLY-----------------------------------------GRRRYLPDLTSDNRQ- 819 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD-ILAEGMM 615 R V N T + VQ RD L M+ Sbjct: 820 ---------RREVAERAALNAPIQGTAADIIKVAMIN--------VQRSLRDAGLKSRML 862 Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 L VHDE+V E D++ L M+S +PL + + Sbjct: 863 ----------LQVHDELVLEVVDSEREQVEQLVRDKMSSAIE--LSVPLDVSVGTGRSW 909 >gi|302528122|ref|ZP_07280464.1| DNA polymerase I [Streptomyces sp. AA4] gi|302437017|gb|EFL08833.1| DNA polymerase I [Streptomyces sp. AA4] Length = 912 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 100/656 (15%), Positives = 189/656 (28%), Gaps = 118/656 (17%) Query: 29 CVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 + AF D D D + L L + ++ + H+ + Sbjct: 359 DLKAVAFATADGEGAYVDVTAMDEADDRALSAWLADPEIRKIGHDLKVPLHAV-RARGWT 417 Query: 88 IPIHRWICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 T + A L + + E G + L Sbjct: 418 FGGLNM-DTALAAYLARPGQRTFGLDDLALRYLHRELRSEAGDGDGQLSLLDGGADELEQ 476 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 + R E E + L+ E L + + G VD Sbjct: 477 KEISAELVKARAIFELAGALA-AELEELGGAKLLAELELPLLEVITELEAAGIAVDTDQL 535 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261 L T+ + + + + ++L+ LF E G+ T+T T Sbjct: 536 TELEAHYLSRVTQAAESAYEVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDAD 594 Query: 262 VLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 L S K P + +R A+R + L++++ DGR+ TLQ A+ TGR Sbjct: 595 ALQSLFEKTEHPFLQHLLEHR-DATRLRTT-VEGLIKSVADDGRIHTTLQQTIAA-TGRL 651 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVV 378 S QN+P + +R + +G +L+ Sbjct: 652 SSIEPNLQNIPVRTEEGRR-------------------------IRDAFVVGDGYAELMT 686 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++ ++ ++AF +GEDL+ +R+F+V A++T +QR K M Sbjct: 687 ADYSQIEMRIMAHLSKDEGLIEAFNSGEDLHTFVASRAFSVPAAEITPEQRYRVKAMSYG 746 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 L Y + L ++T + + + ++ + + + + Sbjct: 747 LAYG-----LSAYGLSQQLKISTEDAKEQMEAYFSRFGGVRDYLQSVVGEAAKCGYTETI 801 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 G +S + + G A K + + Sbjct: 802 FGRRRYLP-----DLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLNVH--------- 847 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+L + ++ Sbjct: 848 -------RALAEAGARSRV------------------------------------LLQVH 864 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 +VL E D + + L M S A +PL+ + + Sbjct: 865 DE---LVL--------EIADGERSDVEKLVREGMGSAAELA--VPLEVSVGYGRSW 907 >gi|308062734|gb|ADO04622.1| DNA polymerase I (polA) [Helicobacter pylori Cuz20] Length = 893 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 97/663 (14%), Positives = 199/663 (30%), Gaps = 140/663 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78 ++ V+ AF ++D + + L+ V I+ H+ + Sbjct: 351 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQ--HVQIIGHDLKPLLS 407 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGE 137 LKA + + + R T +LA V + E I F Sbjct: 408 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEL---IPHETIKDF--KT 462 Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197 ++ A + EY + + E L + + +G+ Sbjct: 463 KNKVEKLEQLDMELNALKRLCEYFEKGGLEEGLLALAR----GVETPLMKVLMGMEFQGF 518 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257 +D L Q E L++++ L + ++L L+ + L + + + Sbjct: 519 KIDAPYFKRLEQEFKNELHVLERQILDLIGVD-FNLNSPKQLSEILYEKLELPQ-NKSRS 576 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T ++ L P + R ++ L+ + D ++ T G + TG Sbjct: 577 TDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATG 634 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKL 376 R S QN+P S +R IAS + L Sbjct: 635 RLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSKEYCL 669 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + D + IE R+LA + ++ + AF G D+++ T F + K++R+I K + Sbjct: 670 LGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSIN 726 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G+ + + Sbjct: 727 --------------FGLVYGMG------------------------------SKKLSETL 742 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + +A+ ++ + + N + + +T + Sbjct: 743 NIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK----------------------- 779 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 GR V+ G N Y + I Q + D+L GM+ Sbjct: 780 ---AFTLLGRYRVFDFTGANDHIKGN----------YLREGVNAIFQGSASDLLKLGMLK 826 Query: 617 ATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYES 670 ++ ++L VHDE++ E + + + ++ + +PL+ + + Sbjct: 827 VSERFKNNPSVRLLLQVHDELIFEIEEKNALKLQQEIQRILNDEV-YPLKVPLETSAFVA 885 Query: 671 KRY 673 KR+ Sbjct: 886 KRW 888 >gi|206603236|gb|EDZ39716.1| DNA polymerase I [Leptospirillum sp. Group II '5-way CG'] Length = 872 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 89/649 (13%), Positives = 181/649 (27%), Gaps = 158/649 (24%) Query: 38 DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA----CFNLDIPIHRW 93 D + + + + + + F++T L F L IP Sbjct: 363 DGDQAIFHPFSDEEAVFKKMSAW-RDEGKAVWC----FDQTRLYRECPRFFALGIPF--V 415 Query: 94 ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 + A L+ + L+ + + R Sbjct: 416 FDATIAAYLLDPGHRDYLLENLAARYFLTEISD-----------RPRLVRNILSRLWD-- 462 Query: 151 REAWRLFGEYCKGDVTVT--REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 D E+ + +E + + G +D + Sbjct: 463 -------------DAVKEGLLELVQSIEIPLG------RILYQMEVLGVRIDRQALESAR 503 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 + ++ +L++E+ L + +++ L+ + GL + +T + L+ Sbjct: 504 ESIEALSRELEEEIYRLAGSR-FTILSPKQVGEILYGKLGLPTARKGKTGYSTDEETLTR 562 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 L P ++ R + ++ + +++ GRL G + TGR S Sbjct: 563 LSALHPLPEKILAYRQ-MKKLLSTYVDPIARGIDAQGRLHGQFNQ-TVTATGRLSSSNPN 620 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S + E +R C IA E + L+ AD + IE Sbjct: 621 LQNIPMRSPAGRE-------------------------IRKCFIAGENRVLLSADYSQIE 655 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA + + + FE ED++ T F T + R K + + Y A Sbjct: 656 LRLLAHFSEDPELMAVFERNEDIHARTARLLFGDPV---TPETRRKAKTINFGILYGMSA 712 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + + L + + + + + E + +G +R Sbjct: 713 FSLSQ-----DLGVESQEAQAFIDRYFGAFPKVGPLFDSILEEAKKTGEVRTILGR--KR 765 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 R E + T+ G A K+ V ++KD+ Sbjct: 766 RIPELFASDRRSREYG---ERMAVNTVLQGSAADLIKKSMVDFGQVRKDR---------- 812 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 ++G D+L + Sbjct: 813 -----PEIG---------------------------------DLL----VQVHDE----- 825 Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ E + + AS + LM +PL + + K + Sbjct: 826 ------LLFEVREDNLDEASGTIRSLMEGA--LRLKVPLVVQVGQGKNW 866 >gi|288575147|ref|ZP_06393504.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570888|gb|EFC92445.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002] Length = 854 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 97/637 (15%), Positives = 187/637 (29%), Gaps = 158/637 (24%) Query: 49 HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA--RSNGLP 106 MP L LE V + L + R + + Sbjct: 355 SGSEMPFELSSWLERGSV------ITSDYKRLLVAMGVPSDYSRVWD--LRSVDYLLHPD 406 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 A + + + E + + + + + + R Sbjct: 407 KASHDMPSVMGDDCPESTEERAMALWRLRDDLSQTIESRGLSEV---------------- 450 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 ++ + L + ++ G ++ + + + ++ +E+ S Sbjct: 451 ----LYGI-------DMPLVPVLVSMEKSGIKLEEPVLQDVISDLKERLERIVEEITSAA 499 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK---LTPQAIQVFNNR 280 + +++ LF + GL T+ +T VL + + Sbjct: 500 G-ESINLNSPKQVGCLLFEKLGLPPVKKTKTGYSTDVTVLEQLAELPEPHNAVPSMLLEH 558 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 S+ + L+ ++ DG +R T + + TGR S QNLP Sbjct: 559 RALSKMSSGFALPLMSSVCGDGIIRSTFESDT-TGTGRLSSRDPNLQNLP---------- 607 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399 SD ++S +I E G+ V AD + +E RVLA ++GE+ Sbjct: 608 ---------------AYGEWSDRIKSSLIPREKGRCFVAADYSQVELRVLAHISGEKRLA 652 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F +G D++ T + F V + VTK+ R K++ L Sbjct: 653 DIFRSGRDIHTETASMVFGVDSSMVTKELRRSAKMVTFGLL------------------- 693 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + A + +R+ + V Sbjct: 694 -------------------------YGMSAFGLAKRLGVGRSEADRIMSRYFAALPGVEA 728 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + ++ ++ I G GR +V + Sbjct: 729 Y---VTKSADEAIAKGYTETL-----------------------FGRIRPLEEVVTGNTR 762 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-----IVLTVHDEIVC 634 R R +Q + D+ + M+ +++ + +VL VHD IVC Sbjct: 763 DRGHIR---RVAINSP------IQGTAADLAKKAMIAVSRSFAEDPDVSMVLQVHDSIVC 813 Query: 635 ETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670 E P+ E + L +M + S A +PL+ EG Sbjct: 814 ECPEERSEEVLAELQEIMKNVASLA--VPLETEGKIG 848 >gi|331088918|ref|ZP_08337827.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium 3_1_46FAA] gi|330406516|gb|EGG86024.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium 3_1_46FAA] Length = 723 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 95/743 (12%), Positives = 204/743 (27%), Gaps = 193/743 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------------DPV 52 +D ET G+ Y + ++ D P H + Sbjct: 88 LDVETT--------GLDIY--NDILVGICLYNPDLPSAYVPFNHTDLQNRRVEGQMTEEE 137 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110 V+ L N D+ + HN F+ ++ + I + W T + + LK Sbjct: 138 CKAVMLPYLANKDLKCINHNIKFDDKMITFNWGQRIA-NVWWDTNIASWVLNENEKHGLK 196 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + L+ + +E P + +F Y D T Sbjct: 197 PLYNKYILNGEGSDE-------------DFGDLFEGIPCNYIPIEIFSIYGANDGFKTWA 243 Query: 171 IFKRLEPLSSKE-----------------QELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 +++ + + E L + + RG + A L+ + Sbjct: 244 LYQFQKQYLNPEAKRADYRKLYDVFMNVEMPLIDVCMDMELRGVEIREDYAKELSVKFNE 303 Query: 214 ERTK-----------LDQELESLT-------YGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 E + ++ ++ + +++ L+ L Sbjct: 304 EMQEKEALCDAYVREFEEYIKENATLMRLTKGTCKINYNSPQQMACLLYDIFQLKSVSRK 363 Query: 256 ET--TCQRVLSSNKKLTPQAIQVFNNR-----------MRASRSAVLKLNTLVEAMN-SD 301 E T +++ ++ +A R + ++ + Sbjct: 364 EPRGTGDKIIQMHRNKAKKAGTKKGERFIEFLDNYQRYKECGKLLGTYIDKIPAVKCEKT 423 Query: 302 GRLRGTLQFLGASRTGRWSGCV----FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 + T GA TGR+S QN+P +S Sbjct: 424 NAVHTTFNQYGA-VTGRFSSSDTVTKINLQNIPSHEKS---------------------- 460 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R A +G KLV D + IE RVLA+ +G++ A++ G+DLY ++ + Sbjct: 461 ------IRKIFKARDGYKLVGGDFSQIEPRVLAYFSGDEAMQNAYKEGKDLYAIMGSKVY 514 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 V ++ +N Sbjct: 515 GVPYEDC------------------------REFYPDGTVNPEGKHRRTTM--------K 542 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 + + + +++ + + +V +L ++ + E+ Sbjct: 543 SVLLGIMYERGAQAIGEQFDKSAQWAQKLIDDFYKSFPKVQQLRLKIEKTAEE------- 595 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 + GR D+ + + Sbjct: 596 -------------------YGYVTTIKGRKRRLPDMQLSNHDDYRYAEA-------HRQS 629 Query: 598 TENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFN-ASMLYHL 650 +++Q S DI+ M+ + +++TVHDE++ E P+ + A +L Sbjct: 630 LNSVIQGSSADIMKLAMIEIYRDPRYKELDCHMIITVHDELIMEVPEANVKVGAELLVST 689 Query: 651 MTSNPSWAKGLPLKAEGYESKRY 673 M LP+ + ++ + Sbjct: 690 MKRVGHSLIDLPMSVDAEVNEYW 712 >gi|210135637|ref|YP_002302076.1| DNA polymerase I [Helicobacter pylori P12] gi|210133605|gb|ACJ08596.1| DNA polymerase I [Helicobacter pylori P12] Length = 903 Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats. Identities = 92/615 (14%), Positives = 187/615 (30%), Gaps = 134/615 (21%) Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEG 126 IV H+ + LKA + + + R T +LA V Sbjct: 409 IVGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLREY--------LK 460 Query: 127 KELI-ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185 +ELI K + A + EY + + E Sbjct: 461 EELIPHEKIKDFKIKAEKLELLSVELNALKRLCEYFEKGGLEENLLALAR----EIETPF 516 Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 + + +G+ +D L Q E L+ ++ L + ++L L+ Sbjct: 517 VKVLMGMEFQGFKIDAPYFKRLEQEFKNELNILECQILDLIGVD-FNLNSPKQLGEILYE 575 Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 + GL ++ + +T ++ L P + R ++ L+ + D ++ Sbjct: 576 KLGLP-KNKSHSTDEKNLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIH 633 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 T G + TGR S QN+P S +R Sbjct: 634 TTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL-------------------------LIR 667 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 IAS + L+ D + IE R+LA + ++ ++AF G D+++ T F + Sbjct: 668 KGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---GDL 724 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 K++R+I K + G+ Sbjct: 725 AKEKRSIAKSIN--------------FGLVYGMG-------------------------- 744 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + + + +A+ ++ + + N + + +T + Sbjct: 745 ----SKKLSETLNIPLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK----------- 789 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 GR V+ D Y+ Y + I Q Sbjct: 790 ---------------AFTLLGRYRVF-DFNGVNDYIKGN---------YLREGVNAIFQG 824 Query: 605 VSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWA 658 + D+L GM+ ++ ++L VHDE++ E + + + ++ + Sbjct: 825 SASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YP 883 Query: 659 KGLPLKAEGYESKRY 673 +PL+ + + R+ Sbjct: 884 LRVPLETSAFVANRW 898 >gi|260889284|ref|ZP_05900547.1| DNA polymerase I [Leptotrichia hofstadii F0254] gi|260860695|gb|EEX75195.1| DNA polymerase I [Leptotrichia hofstadii F0254] Length = 370 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 64/468 (13%), Positives = 135/468 (28%), Gaps = 121/468 (25%) Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS------SNKKLTPQ 272 + L G + ++L LF + + T+ +T VL + Sbjct: 6 IYKLADG-EFNIDSPQQLGEVLFEKLQIPSGKKTKTGYSTNVEVLEMIANNRELTEDKRM 64 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + + + + + + + R+ T G + TGR S QN+P Sbjct: 65 IGKKLLEYRAYKKLLSTYIEPIPKLADKEERIHTTFNQNG-TSTGRLSSANPNLQNIPVR 123 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +R+ +A EG L+ D + IE RVLA + Sbjct: 124 TDDGIR-------------------------IRTGFVAKEGHSLISFDYSQIELRVLAEL 158 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ +KA++ +DL+ T + F Sbjct: 159 SKDRHLVKAYQDNQDLHDLTARKIFFKTEED----------------------------- 189 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + + NF + + E + + + Sbjct: 190 --------------EISRHERSIAKVINFSILYGKTPFGLSKELGITVQEASQYITTYFE 235 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ RV + + + + + + + G Sbjct: 236 EYPRVRKFLDIVTETAK--------------------------LHGFVETFYGTRRYISG 269 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLT 627 + Q R +VQ + +I+ + M+ + ++L Sbjct: 270 INATN---KNIQAQAVRMA------VNTVVQGTAANIIKKVMIELHEEFKNDENIKMLLQ 320 Query: 628 VHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 VHDE++ E D + + +M + + K +PLKA G +K + Sbjct: 321 VHDELIFEVRDEFAKEYMKKIEKIMENTVKF-KKVPLKANGSVAKNWG 367 >gi|261840144|gb|ACX99909.1| DNA polymerase I (polA) [Helicobacter pylori 52] Length = 889 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 90/618 (14%), Positives = 191/618 (30%), Gaps = 138/618 (22%) Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL----KLSSQK 122 I+ H+ + LKA + + + R T +LA V + + +K Sbjct: 393 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWIPHEK 452 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182 +++ K + A + EY + + E Sbjct: 453 IKDFK---------TKSKAGKLEQLDMELNALKRLCEYFEKGGLEEGLLALAR----EVE 499 Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 + + +G+ +D L Q E L++++ L + ++L Sbjct: 500 TPFMKVLMGMEFQGFKIDAPYFKRLEQEFKHELHVLERQILDLIGVD-FNLNSPKQLSEI 558 Query: 243 LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 L+ + L ++ + +T ++ L P + R ++ L+ + D Sbjct: 559 LYEKLELP-KNKSHSTDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDD 616 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 ++ T G + TGR S QN+P S Sbjct: 617 KIHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL------------------------- 650 Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IAS + L+ D + IE R+LA + ++ + AF G D+++ T F Sbjct: 651 LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG--- 707 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 + K++R+I K + G+ Sbjct: 708 EDLAKEKRSIAKSIN--------------FGLVYGMG----------------------- 730 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + + + + +A+ ++ + + L++ E+ ++ KA Sbjct: 731 -------SKKLSETLNIPLSEAKSYIEAYFKRFPSIKDY---LNRMKEEILKTSKAFTLL 780 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 R V D + N Y + I Sbjct: 781 GRYRVFDFTGVNDH-----------------IKGN----------------YLREGVNAI 807 Query: 602 VQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNP 655 Q + D+L GM+ ++ ++L VHDE++ E + + + ++ Sbjct: 808 FQGSASDLLKLGMLKVSERFKNNPLVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV 867 Query: 656 SWAKGLPLKAEGYESKRY 673 + +PL+ + +KR+ Sbjct: 868 -YPLRVPLETSAFMAKRW 884 >gi|154794286|gb|ABS86178.1| DNA polymerase [Glycaspis brimblecombei secondary endosymbiont phage 1] Length = 415 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 147/417 (35%), Positives = 225/417 (53%), Gaps = 16/417 (3%) Query: 164 DVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 D+ TREI++ L + E W LDQ IN RG C+DV LA + V+ E+ +L Sbjct: 3 DILATREIYQHLPRWNMNVDETTLWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTV 62 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 + LT V ++ + L + G+ L D+ +T QR ++ + P ++ + R+ Sbjct: 63 TQQLTDNAVQNATQRDALLQHITSAFGITLPDMQASTLQRRIND-PDIPPALRELLSIRL 121 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ R++ K L++++++DGRLRGT QF GASRTGRW+G +F P NLPRP+ +D Sbjct: 122 QSCRTSTSKYKALLKSISADGRLRGTKQFCGASRTGRWAGRIFQPDNLPRPTLDPNTIDN 181 Query: 342 IITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 I L D +Q+ S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+ Sbjct: 182 GIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKV 241 Query: 400 KAFETGEDL-----YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 AF ++ Y YAR+FN+ P VTK QR IGKVMEL LGY GG AF A Sbjct: 242 NAFSEFDNGKGDDLYKLAYARAFNLLPENVTKAQRQIGKVMELGLGYGGGVAAFLTFALA 301 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L+L A+ N +A ++ + E + + T C+ +K+ WR H Sbjct: 302 YSLDLAELANAALPNIPLNVKREAISWYQKSVETDKTYGLSKKVFVT-CDSIKRMWRNAH 360 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ W ++ A +Q I++ ++ + +++DK+ L + LPSGRSL Y Sbjct: 361 TQTVSFWYDIEDAVKQAIQSPGVAFKCRK-----LSVRRDKSWLRICLPSGRSLCYP 412 >gi|172040823|ref|YP_001800537.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109] gi|171852127|emb|CAQ05103.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109] Length = 879 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 102/686 (14%), Positives = 191/686 (27%), Gaps = 161/686 (23%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELW---------DCVHDPVMPQV-LKEALEN 63 L K + D A D + L D + L+ L + Sbjct: 324 NWLKKNAAYQEGRDAVAEALAVDIDGETLGLLSAENKGLKLDLAALDAKDEQVLRTWLAD 383 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALKLSS 120 H+S L + T V A +L V + Sbjct: 384 RGAPKWFHDSKQSFHAL-RQQGFALDGVE-HDTSVAAYLVRPDLRSWSLGDVLQRH---- 437 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHRE--AWRLFGEYCKGDVTVTREIFKRLEPL 178 G++L E + + + ++E Y +V +T Sbjct: 438 ----AGRDLPENSGSLERAQAVRELVGIMNQELTDAGQAELYFSMEVPLT---------- 483 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 ++ + RG VD A L + + L + ++ Sbjct: 484 --------HILAEMEARGIAVDKAALEELAADYEAQIADEVTAARELAEDDQLNLSSPKQ 535 Query: 239 LKTWLFLETGLHLEDLTE---TTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNT 293 L+ LF + GL T+ +T L ++ P + +R + ++ Sbjct: 536 LQKVLFEDFGLPKTKKTKTGYSTAAAELEKLQQQTEHPFLNHLMAHR-EYQKMKST-IDG 593 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L+ A++ DGR+R T GA+ TGR S QN+P + + + Sbjct: 594 LINAIDGDGRIRTTFNQKGAA-TGRLSSSEPNLQNIPVRTEAGRK--------------- 637 Query: 354 PDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +RS EG L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 638 ----------IRSAFRVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYRAGEDLHNYV 687 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 +R F+V +VT + R K + L Y + L ++ + Sbjct: 688 GSRVFDVPVDEVTPELRRRVKALSYGLVYG-----LSAFGLSQQLGISPGEAKGIMENYF 742 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE----LWNELHQAF 528 + + + + + E E + G R+ ++ +A Sbjct: 743 DRFGGVKRYLDKVVEAAKETGYTETLYGR---------RRYLPELASSNRVARENAERAA 793 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 G A K + + R+L ++ + Sbjct: 794 LNAPIQGTAADIIKLAMLRVD----------------RALRNANLKSRV----------- 826 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY 648 ++ +V E + L Sbjct: 827 -------------------------LLQVHDE-----------LVLEIAPGELEQIQQLL 850 Query: 649 HL-MTSNPSWAKGLPLKAEGYESKRY 673 M S S +PL + + Sbjct: 851 EENMDSAAS--LRVPLDVSAGHGENW 874 >gi|108563870|ref|YP_628186.1| DNA polymerase I [Helicobacter pylori HPAG1] gi|107837643|gb|ABF85512.1| DNA polymerase I [Helicobacter pylori HPAG1] Length = 899 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 95/663 (14%), Positives = 200/663 (30%), Gaps = 140/663 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78 ++ V+ AF ++D + + L++ + + H+ + Sbjct: 357 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHACI--IGHDLKPLLS 413 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGE 137 LKA + + + R T +LA AV + E + K E Sbjct: 414 FLKAKYQVPLENIRIQDTQILAFLKNPEKVGFDAVLKEYLKEDLIPHEKIKDFKTTSKAE 473 Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197 E A + EY + + E + + +G+ Sbjct: 474 KSE-----QLSLELNALKRLCEYFEKGGLEENLLSLAR----GVETPFVKVLMDMEFQGF 524 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257 +D L Q E L++++ L + ++L L+ + L + + + Sbjct: 525 KIDAPYFKRLEQEFKDELKVLERQILDLIGVD-FNLNSPKQLSEVLYEKLELPQ-NKSHS 582 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T ++ L P + R ++ L+ + D ++ T G + TG Sbjct: 583 TDEKNLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATG 640 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKL 376 R S QN+P S +R IAS + L Sbjct: 641 RLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSKEYCL 675 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + D + IE R+LA + ++ ++AF G D+++ T F + K++R+I K + Sbjct: 676 LGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---GDLAKEKRSIAKSIN 732 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G+ + + Sbjct: 733 --------------FGLVYGMG------------------------------SKKLSETL 748 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + +A+ ++ + + N + + +T + Sbjct: 749 NISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK----------------------- 785 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 GR V+ D Y+ Y + I Q + D+L GM+ Sbjct: 786 ---AFTLLGRYRVF-DFNGVNDYVKGN---------YLREGVNAIFQGSASDLLKLGMLK 832 Query: 617 ATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYES 670 ++ ++L VHDE++ E + + + ++ + +PL+ + + Sbjct: 833 VSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YPLRVPLETSAFVA 891 Query: 671 KRY 673 R+ Sbjct: 892 NRW 894 >gi|308172795|ref|YP_003919500.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus amyloliquefaciens DSM 7] gi|307605659|emb|CBI42030.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus amyloliquefaciens DSM 7] Length = 761 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 105/698 (15%), Positives = 197/698 (28%), Gaps = 140/698 (20%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-LWDCVHDP-------VMP 54 + +D ET G+ Y + ++ + + H + Sbjct: 139 IIAVDTETT--------GVDVYTDV--IVGLSLTLPNADWHVYIPVEHVDCEQLSRAYVL 188 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + L + + V HN+ F+ +L+ D+ W T+ + +A+G Sbjct: 189 EGLAPVFNDESIGKVLHNAIFDIAMLRRH-GFDLKGVAW-DTMTAMHLLNENESDRALGG 246 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF-- 172 A K K L + RN + Y D +T +++ Sbjct: 247 A-GSFKLKDLAPKYLKTPADTFDALFG---RNAQFKEVPLDIALVYAAKDTELTWKLYEF 302 Query: 173 -KRLEPLSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL- 222 + + + + + GY +D+ A + + +L +EL Sbjct: 303 QRYHMAKIPTILDYYQTVEIPLLYVIVDLEANGYILDLDFAKEYGEKLHKRAEELRKELV 362 Query: 223 ----ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + +++ L G L ++ ++ L K ++ Sbjct: 363 AELTPFHEGDEPINLNSTHQMRPALSKAIGKDLSNMDA---KKTLKPLKDDYEIIAKLLE 419 Query: 279 NRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + + ++TL N R +G + TGR+S Sbjct: 420 Y-KNIVKLSGTYIDTLPTKQNPTTERWHSRFNPMG-TVTGRFSS---------------- 461 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 T +Q R GK LV AD E R +A+++GE Sbjct: 462 ------GKDEEDKTQQGFNVQNQPPEARPMFGPPPGKLLVGADFKAQEIRCVAYLSGEPV 515 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKD-------QRAIGKVMELALGYQGGAKAFQK 450 + AF D Y T + + +V K+ +R KV LA Y + Sbjct: 516 LINAFLEERDPYATMASNFYKRPHEEVYKNADGSDTKERKKMKVAWLATLYGMSDYSLAD 575 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 M L + + + +E ++ Sbjct: 576 M-----LGVGKKEATEFKEELFGSMPKLSAWLKENEEFVRKNGYVW-------------- 616 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 A + R+++P K Y Sbjct: 617 ----------------ADLNARKRRLPDAKLPRKNIPYGKWNDPK--------------Y 646 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-----KAGYDIV 625 D + S +N + R+ T VQ S M+ A K G+ + Sbjct: 647 DDARKHNSRIN----RALRQATNAR------VQGSSSIQTKVTMIKAHEYCANKPGWALW 696 Query: 626 LTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLP 662 TVHDE++ E P+ A + +M ++ W +P Sbjct: 697 STVHDELIFEVPEDFTWEEAQEIRDIMLNSYRWGDVVP 734 >gi|317179646|dbj|BAJ57434.1| DNA polymerase I [Helicobacter pylori F30] Length = 893 Score = 230 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 93/613 (15%), Positives = 189/613 (30%), Gaps = 128/613 (20%) Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 I+ H+ + LKA + + + R T +LA E LK ++ Sbjct: 397 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKV--GFDEVLKEYLKEEWILH 454 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187 E I F + A + EY + +F E Sbjct: 455 EKIKDF--KTKSKAEKSEQLDRELNALKRLCEYF-EKGGLEEGLFALAR---EVETPFMK 508 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + +G+ +D L Q E L++++ L + ++L L+ + Sbjct: 509 VLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVD-FNLNSPKQLSEILYEKL 567 Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 L ++ + +T ++ L P + R ++ L+ + D ++ T Sbjct: 568 ELP-KNKSHSTDEKNLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTT 625 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 G + TGR S QN+P S +R Sbjct: 626 FIQTG-TATGRLSSHSPNLQNIPVRSPKGL-------------------------LIRKG 659 Query: 368 VIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 IAS + L+ D + IE R+LA + ++ + AF G D+++ T F + K Sbjct: 660 FIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAK 716 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 ++R+I K + G+ Sbjct: 717 EKRSIAKSIN--------------FGLVYGMG---------------------------- 734 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + + + +A+ ++ + + N + + +T + Sbjct: 735 --SKKLSETLNIPLNEAKSYTEAYFKRFPSIKDYLNRMKEEILKTSK------------- 779 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 GR V+ D Y+ Y + I Q + Sbjct: 780 -------------AFTLLGRYRVF-DFTGANDYIKGN---------YLREGVNAIFQGSA 816 Query: 607 RDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKG 660 D+L GM+ ++ ++L VHDE++ E + + + ++ + Sbjct: 817 SDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YPLR 875 Query: 661 LPLKAEGYESKRY 673 +PL+ + +KR+ Sbjct: 876 VPLETSAFIAKRW 888 >gi|317010156|gb|ADU80736.1| DNA polymerase I [Helicobacter pylori India7] Length = 885 Score = 230 bits (585), Expect = 9e-58, Method: Composition-based stats. Identities = 91/617 (14%), Positives = 189/617 (30%), Gaps = 136/617 (22%) Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEG 126 I+ H+ + LKA + + + R T +LA E + K Sbjct: 389 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNP--------EKVGFDEVLKEYLK 440 Query: 127 KELI-ARFCKGETHECLYDR--NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 +ELI K ++ A + Y + + E Sbjct: 441 EELIPHEKIKDFKTTSKAEKLERLDMELNALKRLCAYFEKGGLEEGLLALAR----EVET 496 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 + + +G+ +D L Q E L++++ L + ++L L Sbjct: 497 PFVKVLMGMEFQGFKIDAPYFKRLEQEFKDELKVLERQILELIGVD-FNLNSPKQLSEVL 555 Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 + + L ++ + +T ++ L P + R ++ L+ + D + Sbjct: 556 YEKLELP-KNKSHSTDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDK 613 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + T G + TGR S QN+P S Sbjct: 614 IHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL-------------------------L 647 Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R IAS + L+ D + IE R+LA + ++ ++AF G D+++ T F Sbjct: 648 IRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---G 704 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 ++ K++R+I K + G+ Sbjct: 705 ELAKEKRSIAKSINF--------------GLVYGMG------------------------ 726 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + + + +A+ ++ + + N + + +T + Sbjct: 727 ------SKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK--------- 771 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 GR V+ G N Y + I Sbjct: 772 -----------------AFTLLGRYRVFDFTGANDYVKGN----------YLREGVNAIF 804 Query: 603 QAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS 656 Q + D+L GM+ ++ ++L VHDE++ E + + + ++ Sbjct: 805 QGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV- 863 Query: 657 WAKGLPLKAEGYESKRY 673 + +PL+ + +KR+ Sbjct: 864 YPLRVPLETSAFMAKRW 880 >gi|308064229|gb|ADO06116.1| DNA polymerase I (polA) [Helicobacter pylori Sat464] Length = 893 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 94/663 (14%), Positives = 196/663 (29%), Gaps = 140/663 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78 ++ V+ AF ++D + + L++ + + H+ + Sbjct: 351 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLS 407 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGE 137 LKA + + + R T +LA V E I F Sbjct: 408 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVVREYLKEEL---IPHETIKDF--KT 462 Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197 + A + EY + + E L + + +G+ Sbjct: 463 KSKVEKLEQLDMELNALKRLCEYFEKGGLEEGLLALAR----GVETPLMKVLMGMEFQGF 518 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257 +D L Q E L++++ L + ++L L+ + L + + + Sbjct: 519 KIDAPYFKRLEQEFKNELHVLERQILDLIGVD-FNLNSPKQLSEILYEKLELPQ-NKSRS 576 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T ++ L P + R ++ L+ + D ++ T G + TG Sbjct: 577 TDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATG 634 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKL 376 R S QN+P S +R IAS + L Sbjct: 635 RLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSKEYCL 669 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + D + IE R+LA + ++ + AF G D+++ T F + K++R+I K + Sbjct: 670 LGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSIN 726 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 G+ + + Sbjct: 727 --------------FGLVYGMG------------------------------SKKLSETL 742 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + +A+ ++ + + + + +T + Sbjct: 743 NIPLNEAKSYIEAYFKRFPSIKDYLKRMKEEILKTSK----------------------- 779 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 GR V+ G N Y + I Q + D+L GM+ Sbjct: 780 ---AFTLLGRYRVFDFAGVNDHIKGN----------YLREGVNAIFQGSASDLLKLGMLK 826 Query: 617 ATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYES 670 ++ ++L VHDE++ E + + + ++ + +PL+ + + Sbjct: 827 VSERFKNNPSVRLLLQVHDELIFEIEEKNALKLQQEIQRILNDEV-YPLRVPLETSAFMA 885 Query: 671 KRY 673 KR+ Sbjct: 886 KRW 888 >gi|39545749|emb|CAE04166.3| OSJNBb0034I13.15 [Oryza sativa Japonica Group] Length = 1000 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 93/772 (12%), Positives = 199/772 (25%), Gaps = 163/772 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF---------GFDDHPVELWD--CVHDPVM 53 D E + VI F+ F + +W + Sbjct: 285 ACDTE----VANIDVKQETPVSHGEVICFSIYSGNSDAEADFGNGKTCIWVDVLDGGRDV 340 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------ 106 E+ + V HN F+ V++ I + + T+ LAR Sbjct: 341 LMEFAPFFEDPSIRKVWHNYSFDSHVIENY---GIKVAGFHADTMHLARLWDSSRRIDGG 397 Query: 107 SALKAVGEALKL----SSQKMEEGKELIARFC--KGETHECLYDRNKPNHRE------AW 154 +L+ + ++ + + GK + K + + Sbjct: 398 YSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDGSAGKIISMEPVEVLQRDDR 457 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSS--------------------KEQELWYLDQTIND 194 ++ Y D T +++ L+ + L + Sbjct: 458 EMWICYSSLDSMSTLRLYESLKSKLEKKHWTFDGCPRGSMYDFYEEYWRPFGALLVKMET 517 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF----- 244 G VD + ++ +R + + +++ F Sbjct: 518 AGMLVDRGYLSEIEKVAVAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIEN 577 Query: 245 -LETGLHLED--LTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 + G L + +++ KK + + ++ + + Sbjct: 578 RCKPGETLPKSRTIKVPNDGSLIAEGKKTPKYCTIELFSIVEDLKTDLFTASGWPSVSGD 637 Query: 301 D-----GRLRGTLQFLGASRTGRWSG-CVFPPQNLPRPSRSHEELD-------------- 340 G+L L + SG +L + + Sbjct: 638 ALRSLAGKLPTDLVYTTDDVEDDDSGDSEISEHDLNDTASYGTAYEAFGGGKKGKEACHA 697 Query: 341 ----------QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 + + L+ +R +A+ G L+VAD +E R+LA Sbjct: 698 IAALCEICSIDSLISNFILPLQNQPALEKDRYKIRQAFVAAPGNSLIVADYGQLELRILA 757 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 +A + L AF+ G D + T + V + K + Sbjct: 758 HLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEE------------------KKVLLE 799 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 G L A NF + A + + K W Sbjct: 800 WHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLW 859 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + V + + ++ E GRS + Sbjct: 860 YRDRKEVLAWQMKQKELAQEKCEVY--------------------------TLLGRSRRF 893 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDI 624 ++ + S + R VQ + D+ M+ + G+ + Sbjct: 894 PNMAHATSGQRGH---IERAAINAP------VQGSAADVAMCAMLEIDRNARLKELGWRL 944 Query: 625 VLTVHDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673 +L VHDE++ E P ++ + S++ M+ + + L + ++ + Sbjct: 945 LLQVHDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELAVDAKCAQNW 996 >gi|256384245|gb|ACU78815.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str. GM12] gi|256385078|gb|ACU79647.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str. GM12] gi|296455971|gb|ADH22206.1| DNA polymerase I superfamily [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 911 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 93/673 (13%), Positives = 188/673 (27%), Gaps = 134/673 (19%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-------- 58 D+E S L + + +I + D + + Sbjct: 320 DYE-DSINYLYVESLEEDYHKDKIIGIGISNNKGN-FYLDFKNKAQQLSFFEDTTLSSTD 377 Query: 59 ----EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 E L N+++ ++ +LK + + +V S + Sbjct: 378 SLFEEFLNNSNLKKYTYDIKKTTYLLKNHKYNVLASNFDFDFMVACYSLNANVV-SDLSN 436 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 +KL + E + + F KG D + + + + + D + + Sbjct: 437 QIKL-VDNLIELETIDQIFGKGVKKNPDIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTN 495 Query: 175 LEP-LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV--- 230 + L + I +G +D Q + + ++ +++ L + Sbjct: 496 TYDLYLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEGQMKILVAEEIDNN 555 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++++ LF + L + TT + VL P + +R + ++ Sbjct: 556 FNFSSPKQIQELLFDKLKLPNLEKG-TTSKEVLEKLITYHPIINLLLEHR-KYTKLYTTY 613 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L + + D ++ + TGR S QN+ +E Sbjct: 614 LKGFEKFIFDDSKVHTIFN-HTLTNTGRLSSSYPNIQNISIRDNEQKE------------ 660 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 VR I + K + D + IE RVLA M+ E + AF D+++ Sbjct: 661 -------------VRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADIHL 707 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 FN++ Q+T +QR I KV GL Sbjct: 708 QAAKLIFNLSDDQITSEQRRIAKVFN--------------FGILYGLTDFGL-------- 745 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 A + +++ K + + E + E Sbjct: 746 ----------------------ASDLNISVNQAKQMIKDYYSAFPSLLEFK---EKQVEI 780 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 G S R ++ + + +++ Sbjct: 781 ATSQGYITTL-----------------------SNRRRYINELNSTNHNIRQFGKRI--- 814 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644 +Q + DIL M++ K IV +HDEI+ E D Sbjct: 815 ------AVNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVDDNQLEQT 868 Query: 645 SML-YHLMTSNPS 656 + + + Sbjct: 869 KRIVVSELENALE 881 >gi|225016393|ref|ZP_03705585.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum DSM 5476] gi|224950835|gb|EEG32044.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum DSM 5476] Length = 890 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 79/498 (15%), Positives = 152/498 (30%), Gaps = 107/498 (21%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + + G+ VDVA T +++ VE ++ QE+ G + +L Sbjct: 491 DIELPLSEVLANMENEGFQVDVAGVRTFGEMLQVEIERITQEIYG-YAGEEFNINSTREL 549 Query: 240 KTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + GL T+ +T VL P A V R + ++ + + L++ Sbjct: 550 GAILFDKLGLPTGKKTKTGYSTNVDVLEKLIPKHPIAGLVLEYR-KLTKLSSTYVTGLLK 608 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 D R+ + +RTGR S QN+P + Sbjct: 609 VTGPDQRVHSVFRQ-TETRTGRISSTEPNMQNIPIRTE---------------------- 645 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 + +R +A G L+ AD + IE R+LA ++ + + AF G D++ T ++ Sbjct: 646 ---LGSQMRKFFVAKPGCVLLDADYSQIELRILAHISNDSRMITAFREGADIHTATASQV 702 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F V + + R K + + Y GA + + +N++ + + Sbjct: 703 FGVPAEVLPAELRRRAKAINFGIVYGIGAYSLSQ-----DINVSVAEAKEYIENYLHTYS 757 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 + + E+ + G + + + T G Sbjct: 758 GVRQYMNDIVESSAKSGYVKTMFGRVRHLPEIT--SSNHNTKAFG---ERVALNTPIQGT 812 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 A K V + YR + Sbjct: 813 AADIIKIAMVKV---------------------YRRLKEE-------------------- 831 Query: 597 LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNP 655 +S ++ + E++ E D A ++ M Sbjct: 832 -------GLSAQLI----LQVHD-----------ELLIEVSKADAPRAKVILKEEMEHAA 869 Query: 656 SWAKGLPLKAEGYESKRY 673 +PL + E + + Sbjct: 870 D--LSVPLSVDVSEGENW 885 >gi|269792689|ref|YP_003317593.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100324|gb|ACZ19311.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589] Length = 836 Score = 229 bits (583), Expect = 2e-57, Method: Composition-based stats. Identities = 98/589 (16%), Positives = 171/589 (29%), Gaps = 143/589 (24%) Query: 98 VLARSNGLPSA---LKAVGEALKLSSQKMEE-GKELIARFCKGETHECLYDRNKPNHREA 153 +++ LP + L + G++L++ G+ + + Sbjct: 369 LISALGDLPRGCSVMDLKLCYYGLHPDRTAVMGRDLVSGALSGQWNPWTLWDQIRSDPL- 427 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 W E VTR + L + + G +DV L + ++ Sbjct: 428 WEGVRE------LVTR-----------VDHPLSAVLVDMEREGIGLDVEGLRGLRERLER 470 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT 270 L++ + V + + +++ LF GL T+ +T VL +L Sbjct: 471 ALGALEEGIAREAGAQV-NLQSPKQVAWLLFERLGLPPVKRTKTGLSTDVGVLEELSRLP 529 Query: 271 P---QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + S+ +N +E S G +R T G + TGR S Q Sbjct: 530 EPLGRVPSMILEHREISKLITAFVNPFLEQ-GSSGVIRSTFDQTG-TGTGRLSSRDPNVQ 587 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEA 386 NLP+ + R C++ EG V AD + IE Sbjct: 588 NLPQ-------------------------FGHWAVEFRRCLVPVEEGNVFVSADYSQIEL 622 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA ++GE+ ++AFE G D++ T + + V P V+ +Q Sbjct: 623 RVLAHLSGEERLIRAFEEGADVHARTASWIYGVDPQAVSPEQ------------------ 664 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 + NF A + V Sbjct: 665 --------------------------RRFAKVVNFGLLYGMGAHGLAQRMGVSRSEAAEV 698 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + + V E + + + GR Sbjct: 699 MERYFSALPGVREFTRRMVEQAK--------------------------ARGYAATLMGR 732 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GY 622 +V + + R +Q + DI + M+ +A Sbjct: 733 VRPLSEVS---TVEGRGAGAIDRVAINTP------IQGSAADIARKAMVELHRALAGGDC 783 Query: 623 DIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYES 670 +VL VHD IVC P+ + L +M S +PL E Sbjct: 784 RMVLQVHDSIVCSVPEGMASRVAELMREVMEGAAS--LSVPLVVEVKTG 830 >gi|291526285|emb|CBK91872.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Eubacterium rectale DSM 17629] Length = 724 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 93/744 (12%), Positives = 201/744 (27%), Gaps = 187/744 (25%) Query: 9 ETR------SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49 ET +D+ G+ Y + ++ D P H Sbjct: 76 ETYLTGVSEYVLDVETTGLDVY--NDILVGICLYNPDLPSFYVPFNHTDLQNKRVEGQMT 133 Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109 + V+ L N + + HN F+ V+ + I + W T + Sbjct: 134 EEECKAVMLPYLANGSLKCINHNIKFDDKVVTFQWGQRIA-NVWWDTNIAGWVLNENEKH 192 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 LK K I + P + +F Y D T Sbjct: 193 -----RLKPMYNKY------ILNGEGSDEDFGDLFEGIPCNYIPIDIFAIYGANDGFKTW 241 Query: 170 EIFKRLEPLSSKEQEL-----------------WYLDQTINDRGYCVDVALAHTLNQIVD 212 +++ + ++ + + RG + A L+ + Sbjct: 242 ALYQFQKKYLREDHPRADYRKLYHVFRDIEMPLIDVCMDMELRGVEIREDYAKELSVKFN 301 Query: 213 VERTKLDQELESL------------------TYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 E + ++ + + +++ + L Sbjct: 302 AEMAEKEKLCDEYVAKFDKFIEENPTLMRLTKGTKKINYNSPQQVACLFYDIFKLKSVSR 361 Query: 255 TET--TCQRVLSSNKKL---------TPQAIQVFNN--RMRASRSAVLKLNTLVEA-MNS 300 E T +++ ++ + N + ++ + E Sbjct: 362 KEPRGTGDKIVQQHRNKAKKAGTKKGEEFIQFLDNYQRYKECGKLLGTYIDKIPEVKCAK 421 Query: 301 DGRLRGTLQFLGASRTGRWSGCV----FPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + T GA +TGR+S QN+P +S Sbjct: 422 TNAVHTTYNQYGA-KTGRFSSSDTVTKINLQNIPSHEKS--------------------- 459 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R A +G K V D + IE RVL++++G++ +A+ G+DLY ++ Sbjct: 460 -------IRKIFRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKV 512 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 + V ++ +N Sbjct: 513 YGVPYEDC------------------------REFYPDGTVNAEGKHRRTTM-------- 540 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 + + + +++ + + ++ +L ++ + E+ Sbjct: 541 KSVLLGIMYERGAKAIGEQFDKSAEWAQKLIDDFYKSFPKIQQLRLKVEKMAEEY--GYV 598 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 I ++R +P + LP Y++ + Sbjct: 599 TTIQGRKRRLPE-----------MQLPDHDDYRYQEAH--------------------RQ 627 Query: 597 LTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFN-ASMLYH 649 ++Q S DI+ M+ +V+TVHDE++ E P+ A +L + Sbjct: 628 SLNAVIQGSSADIMKLAMIAIYNDPQYKALDCHMVITVHDELIMEVPEDHIKEGADLLVN 687 Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673 M LP+ + + + Sbjct: 688 TMKRVGHSLIDLPMSVDAEVNDYW 711 >gi|315585859|gb|ADU40240.1| DNA-directed DNA polymerase I [Helicobacter pylori 35A] Length = 893 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 93/667 (13%), Positives = 204/667 (30%), Gaps = 148/667 (22%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78 ++ V+ AF ++D + + L++ + + H+ + Sbjct: 351 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLS 407 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL----KLSSQKMEEGKELIARF 133 LKA + + + R T +LA V + + +K+++ K Sbjct: 408 FLKAKYQVSVEDIRIQDTQILAFLKNPEKVGFDEVLKQYLKEEWIPHEKIKDFK------ 461 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193 ++ A + EY + + E + + Sbjct: 462 ---TKNKAEKLELLSVELNALKRLCEYFEKGGLEEGLLALAR----EVETPFVKVLMGME 514 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 +G+ +D L Q E L++++ L + ++L L+ + L ++ Sbjct: 515 FQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVD-FNLNSPKQLSEILYEKLELP-KN 572 Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 + +T ++ L P + R ++ L+ + D ++ T G Sbjct: 573 KSHSTDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG- 630 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 + TGR S QN+P S +R I+S + Sbjct: 631 TATGRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFISSSK 665 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 L+ D + IE R+LA + ++ + AF G D+++ T F + K++R+I Sbjct: 666 EYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIA 722 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G+ + Sbjct: 723 KSIN--------------FGLVYGMG------------------------------SKKL 738 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + +A+ ++ + + N + + +T + Sbjct: 739 SETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK------------------- 779 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 GR V+ VG N Y + I Q + D+L Sbjct: 780 -------AFTLLGRYRVFDFVGVNDHIKGN----------YLREGVNAIFQGSASDLLKL 822 Query: 613 GMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAE 666 GM+ ++ ++L VHDE++ E + + + ++ + +PL+ Sbjct: 823 GMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQREIQRILNDEV-YPLRVPLETS 881 Query: 667 GYESKRY 673 + +KR+ Sbjct: 882 AFIAKRW 888 >gi|211731855|gb|ACJ10154.1| DNA polymerase [Bacteriophage APSE-4] Length = 773 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 135/388 (34%), Positives = 206/388 (53%), Gaps = 19/388 (4%) Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + LT V ++ + L + G+ L D+ +T QR ++ + P ++ + R++ Sbjct: 9 QQLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRIND-PDIPPALRELLSVRLQ 67 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + ++ K L++++++DGRLRGT QF GASRTGRW+G VF P NLPRP+ +D Sbjct: 68 SCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNG 127 Query: 343 ITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 I L D +Q+ S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+ Sbjct: 128 IEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVN 187 Query: 401 AFETGEDL-----YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 AF ++ Y YAR+FN+ P VTK+QR IGKVMEL LGY GG AF A Sbjct: 188 AFSEFDNGKGDDLYKLAYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAY 247 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 GL+L+ A N +A + + E + + + T C+ +K+ WR H Sbjct: 248 GLDLDELAEAALPNIPLGVKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHP 306 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + W ++ A +Q I++ ++ + +++DK L + LPSGRSL Y Sbjct: 307 QTVSFWYDIEDAVKQAIQSPGIAFKCRK-----LSVRRDKGWLRICLPSGRSLCYPSARI 361 Query: 576 NR---SYLNT--TTRQLTREYTYGGKLT 598 +Y+ T +R+ R TYGGKL Sbjct: 362 ENGQITYMGTNPYSRKWERLKTYGGKLC 389 Score = 96.0 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 43/78 (55%), Positives = 54/78 (69%) Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657 ENI Q+ +RD+LA M KAGY+IVLTVHDEI+ E PDT +F+A L L++ N W Sbjct: 695 CENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 754 Query: 658 AKGLPLKAEGYESKRYRK 675 A LPL A G+E+ RYRK Sbjct: 755 AWDLPLSANGFETYRYRK 772 >gi|317182675|dbj|BAJ60459.1| DNA polymerase I [Helicobacter pylori F57] Length = 893 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 95/667 (14%), Positives = 204/667 (30%), Gaps = 148/667 (22%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78 ++ V+ AF +D + + L++ + + H+ + Sbjct: 351 KEKKVLALAFLLEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLS 407 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL----KLSSQKMEEGKELIARF 133 LKA + + + R T +LA V + + +K+++ K Sbjct: 408 FLKAKYQVSLEDIRIQDTQILAFLKNPEKVGFDEVLKQYLKEEWIPHEKIKDFK------ 461 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193 + A + EY + + E + + Sbjct: 462 ---TKSKAGKLELLSVELNALKRLCEYFEKGGLEEGLLALAR----EVETPFMKVLMGME 514 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 +G+ +D L Q E L++++ L + ++L L+ + GL ++ Sbjct: 515 FQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVD-FNLNSPKQLSEILYEKLGLP-KN 572 Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 + +T ++ L P + R ++ L+ + D ++ T G Sbjct: 573 KSHSTDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG- 630 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 + TGR S QN+P S +R IAS + Sbjct: 631 TATGRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSK 665 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 L+ D + IE R+LA + ++ + AF G D+++ T F + K++R+I Sbjct: 666 EYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIA 722 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + G+ + Sbjct: 723 KSIN--------------FGLVYGMG------------------------------SKKL 738 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + +A+ ++ S + + N + + +T + Sbjct: 739 SETLNIPLNEAKSYIEAYFKRFSSIKDYLNRMKEEILKTSK------------------- 779 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 GR V+ D Y+ Y + I Q + D+L Sbjct: 780 -------AFTLLGRYRVF-DFTGANDYIKGN---------YLREGVNAIFQGSASDLLKL 822 Query: 613 GMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 GM+ ++ ++L VHDE++ E + + + ++ + +PL+ Sbjct: 823 GMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETS 881 Query: 667 GYESKRY 673 + +KR+ Sbjct: 882 AFMAKRW 888 >gi|307249707|ref|ZP_07531687.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858273|gb|EFM90349.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 686 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 47/357 (13%), Positives = 102/357 (28%), Gaps = 79/357 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53 + +D ET + ++ ++ +FG + H + Sbjct: 356 KLVAVDTETDNLDSMS----------ANLVGISFGLANGEACYIPLTHKEQVTLEPQQSD 405 Query: 54 --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 LK LE+ DV + N ++ T+ Sbjct: 406 LFAEPAEVETTTSFELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANH---G 462 Query: 88 IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + + T++ + + + + + G + I E Sbjct: 463 VQVEGVAFDTMLESYTLNSTGRHNMDELADRY--------LGHKTIEF----EEIAGKGK 510 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTIN 193 + A + +Y D VT ++ + L P E L + I Sbjct: 511 NQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIE 570 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +D + ++ ++L+Q + S + + ++L+ LF + GL + Sbjct: 571 RNGVLIDPEKLLAQSVEIEQRLSELEQLVHSEAG-EIFNLASTKQLQEILFTKLGLPVLK 629 Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLR 305 T +T + VL ++ S+ + L +N GR+ Sbjct: 630 KTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVH 686 >gi|238019447|ref|ZP_04599873.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748] gi|237864146|gb|EEP65436.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748] Length = 873 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 91/593 (15%), Positives = 167/593 (28%), Gaps = 131/593 (22%) Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 R +LA L RF D Sbjct: 400 NTARIHDMSLLAYLLDPTRTN------YGYL--------YLTERFSVPSIASGSVDVECV 445 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + +A E E++ E + E L + + G +D Sbjct: 446 SMVKALLAMNEVACESARRE-ELWSLYE---TIELPLIHTLVVMEKNGIYIDTNKLAETT 501 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 E ++ QE+ L + ++L LF + L + T+ +T VL Sbjct: 502 ARFKDELAQVQQEIYDLAG-ETFNINSPKQLGVILFEKMNLPVIKKTKTGYSTDAEVLDM 560 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + +P ++ R ++ L L +N + T + TGR S Sbjct: 561 LRNESPIVEKILAYR-SVAKLVSTYLEGLAVLINDKTKRIHTTFNQMVTATGRLSSSDPN 619 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGI 384 QN+P + E +R+ G LV AD + I Sbjct: 620 LQNIPVRTEKGRE-------------------------IRALFYPGAGYDTLVSADYSQI 654 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA ++G++ +KAF G+D++ T A A VT ++R+ K + + Y Sbjct: 655 ELRILAHLSGDEALIKAFVDGKDIHRFTAAEVLGKAQEDVTSEERSHAKAINFGIIYGIS 714 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 + L + + + + + M + E Sbjct: 715 -----DFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMF----- 764 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 ++R++P + + Sbjct: 765 ------------------------------------GRQRELPDINSRNFNRRSF----- 783 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV-QAVSRDILAEGMMNATKAGYD 623 R+ +NT + KL N V Q + + Sbjct: 784 ----------AERTAMNTPIQG---TAADIIKLAMNQVEQ------------KLEEGNFK 818 Query: 624 --IVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + + L M S +PL + + ++ + Sbjct: 819 SRLLLQVHDELVLEVVNEELEAVEELLRSTMQSVVE--LHVPLIVDVHHAENW 869 >gi|211731846|gb|ACJ10149.1| DNA polymerase [Bacteriophage APSE-5] Length = 773 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 136/388 (35%), Positives = 208/388 (53%), Gaps = 19/388 (4%) Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + LT V ++ + L + G+ L D+ +T QR ++ + P ++ + R++ Sbjct: 9 QQLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRIND-PDIPPDLRELLSVRLQ 67 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + ++ K L++++++DGRLRGT QF GASRTGRW+G VF P NLPRP+ +D Sbjct: 68 SCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNG 127 Query: 343 ITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 I L D +Q+ S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+K Sbjct: 128 IEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVK 187 Query: 401 AFETGEDL-----YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 AF ++ Y YAR+FN+ P VTKDQR IGKVMEL LGY GG AF A Sbjct: 188 AFSEFDNGKGDDLYKLAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAY 247 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 GL+L+ A + P +A ++ + E + + + C+ +K+ WR H Sbjct: 248 GLDLDELAEAALPHIPPGVKREATSWYQKSVETDKTYGLSEKIFVN-CDSLKRMWRNAHP 306 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + W ++ A +Q I++ ++ + +++DK L + LPSGRSL Y Sbjct: 307 QTVSFWYDIEDAVKQAIQSPGIAFKCRK-----LSVRRDKGWLRICLPSGRSLCYPSARI 361 Query: 576 NR---SYLNT--TTRQLTREYTYGGKLT 598 +Y+ T +R+ R TYGGKL Sbjct: 362 ENGQITYMGTNPYSRKWERLKTYGGKLC 389 Score = 94.8 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 43/78 (55%), Positives = 54/78 (69%) Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657 ENI Q+ +RD+LA M KAGY+IVLTVHDEI+ E PDT +F+A L L++ N W Sbjct: 695 CENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSHW 754 Query: 658 AKGLPLKAEGYESKRYRK 675 A LPL A G+E+ RYRK Sbjct: 755 AWDLPLSANGFETYRYRK 772 >gi|312874207|ref|ZP_07734241.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d] gi|311090277|gb|EFQ48687.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d] Length = 883 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 85/665 (12%), Positives = 188/665 (28%), Gaps = 141/665 (21%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85 F+ + + D D + Q LK+ LE+ ++ + L+ Sbjct: 337 AQYAGFSVKI-KQKIYVCD---DVTLLQEAPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 391 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 + + + ++ + + L + + +E E + Sbjct: 392 ITL-FNVTDDIMLASYIADSENN----AGDLGVLANSYQEF-----YVQSDEIIYGKGKK 441 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDR 195 H + V V ++ ++ P + + + + + Sbjct: 442 Q---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIA 498 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G V + +DV T L ++ L + ++L LF + L T Sbjct: 499 GIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFEKLKLTPAKKT 557 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T VL + +P + + R S+ +N L++ + +DG++ Sbjct: 558 KTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRFLQ-T 615 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-S 371 + TGR S QN+P + +R + Sbjct: 616 LTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAFVPCK 650 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 + L D + +E RVLA ++ E+ L+AF+ G D++ T + F ++ +VT R Sbjct: 651 QDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRR 710 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + Y L ++ N+ E++ +++ + + Sbjct: 711 HAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAR 765 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 E + + R+ K+ + + + G A K Sbjct: 766 EKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI------- 813 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + +L R L Sbjct: 814 ----------------------------AMIKMQSELERRK------------------L 827 Query: 611 AEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 M+ ++ + P + +L +M +PL A+ Sbjct: 828 KTKMILQIHDE-----------LLFDVPSEELDLIKILVPKIMQQAAQ--LDVPLIADAN 874 Query: 669 ESKRY 673 + Sbjct: 875 WGHNW 879 >gi|308185239|ref|YP_003929372.1| DNA polymerase I [Helicobacter pylori SJM180] gi|308061159|gb|ADO03055.1| DNA polymerase I [Helicobacter pylori SJM180] Length = 897 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 94/664 (14%), Positives = 199/664 (29%), Gaps = 144/664 (21%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78 +D ++ AF D + + L++ + + H+ + Sbjct: 357 KDKKILALAFLLQDQ-GYFLPLEEALFSPFSLEFLQNAFSQMLQHAQI--IGHDLKPLLS 413 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEGKELI-ARFCKG 136 LKA + + + R T +LA E + K +ELI K Sbjct: 414 FLKAKYQVPLENIRIQDTQILAFLKNP--------EKVGFDEVLKEYLKEELIPHEKIKD 465 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + A + EY + + E + + +G Sbjct: 466 FKTKAEKLELLSVELNALKRLCEYFEKGGLEEGLLSLAR----GVETPFMKVLMGMEFQG 521 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 + +D L Q E L++++ L + ++L L+ + L ++ + Sbjct: 522 FKIDAPYFKRLEQEFKNELHVLERQILDLIGVD-FNLNSPKQLGEVLYEKLELP-KNKSH 579 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T ++ L P + R ++ L+ + D ++ T G + T Sbjct: 580 STDEKNLLKILDKHPSIPLILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TAT 637 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375 GR S QN+P S +R IAS + Sbjct: 638 GRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSKEYC 672 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ D + IE R+LA + ++ ++AF G D+++ T F + K +R+I K + Sbjct: 673 LLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKKKRSIAKSI 729 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G+ + + Sbjct: 730 N--------------FGLVYGMG------------------------------SKKLSET 745 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + + +A+ ++ + + N + + +T + Sbjct: 746 LNIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSK---------------------- 783 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 GR + D Y+ Y + I Q + D+L GM+ Sbjct: 784 ----AFTLLGRYRAF-DFTGANDYIKGN---------YLREGVNAIFQGSASDLLKLGML 829 Query: 616 NATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYE 669 ++ ++L VHDE++ E + + + ++ + +PL+ + Sbjct: 830 KVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFV 888 Query: 670 SKRY 673 + R+ Sbjct: 889 ANRW 892 >gi|309803215|ref|ZP_07697312.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d] gi|308164723|gb|EFO66973.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d] Length = 883 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 85/665 (12%), Positives = 187/665 (28%), Gaps = 141/665 (21%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85 F+ + + D D + Q LK+ LE+ ++ + L+ Sbjct: 337 AQYAGFSVKI-KQKIYVCD---DVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 391 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 + + + ++ + + L + + +E E + Sbjct: 392 ITL-FNVTDDIMLASYIADSENN----AGDLGVLANSYQEF-----YVQSDEIIYGKGKK 441 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDR 195 H + V V ++ ++ P + + + + + Sbjct: 442 Q---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIA 498 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G V + +DV T L ++ L + ++L LF + L T Sbjct: 499 GIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFEKLKLTPAKKT 557 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T VL + +P + + R S+ +N L++ + +DG++ Sbjct: 558 KTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRFLQ-T 615 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-S 371 + TGR S QN+P + +R + Sbjct: 616 LTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAFVPCK 650 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 + L D + +E RVLA ++ E+ L+AF+ G D++ T + F ++ +VT R Sbjct: 651 QDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRR 710 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + Y L ++ N+ E++ +++ + + Sbjct: 711 HAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAR 765 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 E + + R+ K+ + + + G A K Sbjct: 766 EKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI------- 813 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + +L R L Sbjct: 814 ----------------------------AMIKMQSELERRK------------------L 827 Query: 611 AEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 M+ ++ + P + L +M +PL A+ Sbjct: 828 KTKMILQIHDE-----------LLFDVPSEELDLIKTLVPKIMQQAAQ--LDVPLIADAN 874 Query: 669 ESKRY 673 + Sbjct: 875 WGHNW 879 >gi|83319510|ref|YP_424604.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283396|gb|ABC01328.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 911 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 92/673 (13%), Positives = 189/673 (28%), Gaps = 134/673 (19%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-------- 58 D+E S L + + +I + D + + Sbjct: 320 DYE-DSINYLYVESLEEDYHKDKIIGIGISNNKGN-FYLDFKNKAQQLSFFEDTTLSSTD 377 Query: 59 ----EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 E L N+++ ++ +LK + + +V S + Sbjct: 378 SLFEEFLNNSNLKKYTYDIKKTTYLLKNHKYNVLASNFDFDFMVACYSLNANVV-SDLSN 436 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 +KL + E + + F KG D + + + + + D + + Sbjct: 437 QIKL-VDNLIELETIDEIFGKGVKKNPDIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTN 495 Query: 175 LEP-LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV--- 230 + L + I +G +D Q + + ++ +++ L + Sbjct: 496 TYDLYLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEWQMKILVAEEIDNN 555 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++++ LF + L + TT + VL P + +R + ++ Sbjct: 556 FNFSSPKQIQELLFDKLKLPNLEKG-TTSKEVLEKLITYHPIINLLLEHR-KYTKLYTTY 613 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L + + D ++ + TGR S QN+ +E Sbjct: 614 LKGFEKFIFDDNKVHTIFN-HTLTNTGRLSSSYPNIQNISIRDNEQKE------------ 660 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 VR I + K + D + IE RVLA M+ E + AF D+++ Sbjct: 661 -------------VRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADIHL 707 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 FN++ Q+T +QR I KV GL A + N Sbjct: 708 QAAKLIFNLSDDQITSEQRRIAKVFN--------------FGILYGLTDFGLASDLNMN- 752 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 +++ K + + + + E Sbjct: 753 -----------------------------VNQAKQMIKDYYSAFPSLLDFK---EKQVEI 780 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 G S R ++ + + +++ Sbjct: 781 ATSKGYITTL-----------------------SNRRRYINELNSTNHNIRQFGKRI--- 814 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644 +Q + DIL M++ K I+ +HDEI+ E D Sbjct: 815 ------AVNTPIQGTASDILKVAMISIYKKLKEQNLDAKIICQIHDEIILEVDDNQLEQT 868 Query: 645 SML-YHLMTSNPS 656 + + + Sbjct: 869 KKIVVSELENALE 881 >gi|259500513|ref|ZP_05743415.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335] gi|259167897|gb|EEW52392.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335] Length = 890 Score = 228 bits (580), Expect = 4e-57, Method: Composition-based stats. Identities = 85/665 (12%), Positives = 187/665 (28%), Gaps = 141/665 (21%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85 F+ + + D D + Q LK+ LE+ ++ + L+ Sbjct: 344 AQYAGFSVKI-KQKIYVCD---DVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 398 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 + + + ++ + + L + + +E E + Sbjct: 399 ITL-FNVTDDIMLASYIADSENN----AGDLGVLANSYQEF-----YVQSDEIIYGKGKK 448 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDR 195 H + V V ++ ++ P + + + + + Sbjct: 449 Q---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIA 505 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G V + +DV T L ++ L + ++L LF + L T Sbjct: 506 GIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFEKLKLTPAKKT 564 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T VL + +P + + R S+ +N L++ + +DG++ Sbjct: 565 KTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRFLQ-T 622 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-S 371 + TGR S QN+P + +R + Sbjct: 623 LTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAFVPCK 657 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 + L D + +E RVLA ++ E+ L+AF+ G D++ T + F ++ +VT R Sbjct: 658 QDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRR 717 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + Y L ++ N+ E++ +++ + + Sbjct: 718 HAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAR 772 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 E + + R+ K+ + + + G A K Sbjct: 773 EKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI------- 820 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + +L R L Sbjct: 821 ----------------------------AMIKMQSELERRK------------------L 834 Query: 611 AEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 M+ ++ + P + L +M +PL A+ Sbjct: 835 KTKMILQIHDE-----------LLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIADAN 881 Query: 669 ESKRY 673 + Sbjct: 882 WGHNW 886 >gi|312875574|ref|ZP_07735575.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b] gi|311088828|gb|EFQ47271.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b] Length = 883 Score = 227 bits (579), Expect = 5e-57, Method: Composition-based stats. Identities = 85/665 (12%), Positives = 187/665 (28%), Gaps = 141/665 (21%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85 F+ + + D D + Q LK+ LE+ ++ + L+ Sbjct: 337 AQYAGFSVKI-KQKIYVCD---DVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 391 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 + + + ++ + + L + + +E E + Sbjct: 392 ITL-FNVTDDIMLASYIADSENN----AGDLGVLANSYQEF-----YVQSDEIIYGKGKK 441 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDR 195 H + V V ++ ++ P + + + + + Sbjct: 442 Q---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIA 498 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G V + +DV T L ++ L + ++L LF + L T Sbjct: 499 GIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFEKLKLTPAKKT 557 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T VL + +P + + R S+ +N L++ + +DG++ Sbjct: 558 KTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRFLQ-T 615 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-S 371 + TGR S QN+P + +R + Sbjct: 616 LTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAFVPCK 650 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 + L D + +E RVLA ++ E+ L+AF+ G D++ T + F ++ +VT R Sbjct: 651 QDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRR 710 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + Y L ++ N+ E++ +++ + + Sbjct: 711 HAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAR 765 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 E + + R+ K+ + + + G A K Sbjct: 766 EKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI------- 813 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + +L R L Sbjct: 814 ----------------------------AMIKMQSELERRK------------------L 827 Query: 611 AEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 M+ ++ + P + L +M +PL A+ Sbjct: 828 KTKMILQIHDE-----------LLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIADAN 874 Query: 669 ESKRY 673 + Sbjct: 875 WGHNW 879 >gi|302191203|ref|ZP_07267457.1| DNA polymerase I [Lactobacillus iners AB-1] Length = 883 Score = 227 bits (579), Expect = 5e-57, Method: Composition-based stats. Identities = 85/665 (12%), Positives = 187/665 (28%), Gaps = 141/665 (21%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85 F+ + + D D + Q LK+ LE+ ++ + L+ Sbjct: 337 AQYAGFSVKI-KQKIYVCD---DVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 391 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 + + + ++ + + L + + +E E + Sbjct: 392 ITL-FNVTDDIMLASYIADSENN----AGDLGVLANSYQEF-----YVQSDEIIYGKGKK 441 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDR 195 H + V V ++ ++ P + + + + + Sbjct: 442 Q---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIA 498 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G V + +DV T L ++ L + ++L LF + L T Sbjct: 499 GIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFEKLKLTPAKKT 557 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T VL + +P + + R S+ +N L++ + +DG++ Sbjct: 558 KTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRFLQ-T 615 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-S 371 + TGR S QN+P + +R + Sbjct: 616 LTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAFVPCK 650 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 + L D + +E RVLA ++ E+ L+AF+ G D++ T + F ++ +VT R Sbjct: 651 QDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRR 710 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + Y L ++ N+ E++ +++ + + Sbjct: 711 HAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAR 765 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 E + + R+ K+ + + + G A K Sbjct: 766 EKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI------- 813 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + +L R L Sbjct: 814 ----------------------------AMIKMQSELERRK------------------L 827 Query: 611 AEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 M+ ++ + P + L +M +PL A+ Sbjct: 828 KTKMILQIHDE-----------LLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIADAN 874 Query: 669 ESKRY 673 + Sbjct: 875 WGHNW 879 >gi|297565778|ref|YP_003684750.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946] gi|296850227|gb|ADH63242.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946] Length = 682 Score = 227 bits (579), Expect = 5e-57, Method: Composition-based stats. Identities = 104/690 (15%), Positives = 193/690 (27%), Gaps = 183/690 (26%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L +D ET G+ + + ++ + + L D P + L+ E Sbjct: 149 VLGLDLETT--------GLDPHQDRPRLLSLS---TERDTYLVDLFALPHALEALRPLFE 197 Query: 63 NTDVTI-VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 + V HN F+ L L R CT + + S + A+ Sbjct: 198 AKTGPVLVGHNLKFDLAFLLKA-GLWPEGRRLWCTGLAHQVIHARSRMPALA-------- 248 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----- 176 +L+ + Y D V ++ + + Sbjct: 249 ------DLV-------PGLDKRLQTSDWSGPISEAQLAYAARDTQVLLPLYHQQQEESRR 295 Query: 177 ----PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + E + G + + ++ + + L+ T + Sbjct: 296 LGIGKVLEIESRALPAVAWMGLMGVPFNPERWLATAKEAELSAQEALKRLDWRT-----N 350 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +++ L G+ L T + LS +++ P + R + Sbjct: 351 WDSPKQVLEAL-RRAGIEL----SDTREETLSRHRE-HPTVAALLAYR-EHRKRQSTYGA 403 Query: 293 TLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 +E ++ GR+ + Q +GA GR S Q +PR Sbjct: 404 AWLENLHPLTGRIHPSWQQIGAES-GRMSCSRPNLQQVPREPAY---------------- 446 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 R+C A G+ L+ AD + IE R+ A +AGE+ L+AFE GEDL+ Sbjct: 447 -------------RACFQAPGGRVLIKADYSQIELRLAAQIAGEKRMLEAFEQGEDLHTL 493 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A + +++ R + K + L Y G++ + A Sbjct: 494 TARLVTGKA--EPSREDRQLAKALNFGLLYGMGSEGLRTYARAN---------------- 535 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E +++A+ + + + Sbjct: 536 ----------------------YGLELSPQEAEALREAFFRAYPGLRAWHR--------- 564 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + + + + +GR T + Sbjct: 565 --------------------HQPEGEVEVRTLAGRRR----------VTGRYTEK----- 589 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-S 645 VQ D L + ++ G VL VHDEIV E P A + Sbjct: 590 ------LNTPVQGSGADGLKLTLALLYESRQKAPGCFPVLAVHDEIVIEAPADGVSAAYA 643 Query: 646 MLYHLMTSNPSWAK-GLPLKAEGYESKRYR 674 L M +P+ E + + Sbjct: 644 WLTRSMREGMEAILTKVPVLVEVGVCEDWG 673 >gi|325912689|ref|ZP_08175072.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B] gi|325478110|gb|EGC81239.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B] Length = 883 Score = 227 bits (579), Expect = 5e-57, Method: Composition-based stats. Identities = 85/665 (12%), Positives = 187/665 (28%), Gaps = 141/665 (21%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85 F+ + + D D + Q LK+ LE+ ++ + L+ Sbjct: 337 AQYAGFSVKI-KQKIYVCD---DVTLLQEAPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 391 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 + + + ++ + + L + + +E E + Sbjct: 392 ITL-FNVTDDIMLASYIADSENN----AGDLGVLANSYQEF-----YVQSDEIIYGKGKK 441 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDR 195 H + V V ++ ++ P + + + + + Sbjct: 442 Q---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIA 498 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G V + +DV T L ++ L + ++L LF + L T Sbjct: 499 GIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFDKLKLTPAKKT 557 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T VL + +P + + R S+ +N L++ + +DG++ Sbjct: 558 KTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRFLQ-T 615 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-S 371 + TGR S QN+P + +R + Sbjct: 616 LTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAFVPCK 650 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 + L D + +E RVLA ++ E+ L+AF+ G D++ T + F ++ +VT R Sbjct: 651 QDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRR 710 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + Y L ++ N+ E++ +++ + + Sbjct: 711 HAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAR 765 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 E + + R+ K+ + + + G A K Sbjct: 766 EKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI------- 813 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + +L R L Sbjct: 814 ----------------------------AMIKMQSELERRK------------------L 827 Query: 611 AEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 M+ ++ + P + L +M +PL A+ Sbjct: 828 KTKMILQIHDE-----------LLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIADAN 874 Query: 669 ESKRY 673 + Sbjct: 875 WGHNW 879 >gi|188996542|ref|YP_001930793.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931609|gb|ACD66239.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1] Length = 587 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 99/694 (14%), Positives = 206/694 (29%), Gaps = 152/694 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV--HDPVMPQVLKEA 60 L++D E + K + + L G D+ + D + + V+ ++ Sbjct: 24 YLYLDTE-----VMIKDFENIDFFNDKIRLIQIG-DEENTFVIDLLKINPEVVKNHIQNL 77 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEA 115 +EN + + HN F+ LK NL+I T++ ++ +L A + Sbjct: 78 IENKGI--IGHNLKFDLKFLK--TNLNILPKIVFDTMIASQILAKGDSNQRHSLSASAKR 133 Query: 116 L-KLSSQKMEE-----GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 L K + K+L + + + R+ + K T Sbjct: 134 FVSLDVDKTYQKSPWWAKDLSSEQIEYAAKDIDTLRHLFKEEKNQLNQDNLHKKASGETF 193 Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 ++F + P+++ E I G +D A L + + E + + T Sbjct: 194 KVFGVINPVAALEMAFLPALVEIELSGIPIDEEEAKKLLKQKESEFQSDYMKFKIKTGAD 253 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETT--CQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 +++ +L + + L + + Q V + + + + R + Sbjct: 254 PF---SPQQVVNYLTNKLKIKLPKTEKGSFSSQDVFLKDYEDIEEVRLLLKLR---ADKK 307 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 ++ + + R+ G + +GA+ TGR S QN+P+ + Sbjct: 308 IIDKIKEILQFTRNERVYGEFKQIGAA-TGRMSSLRPNLQNIPKNLKY------------ 354 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 EG K +VAD + IE R+ A ++ + AF G+D Sbjct: 355 -------------------LFKPKEGYKFIVADYSQIELRIAAQYTKDENMITAFNEGKD 395 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 L+ T + + ++TK++R + K + L Y K+ + A Sbjct: 396 LHKLTASIITGKSYDEITKEERQLAKAINFGLIYGMSPKSLVEYAKAN------------ 443 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 ++ + + + + + +++ + Sbjct: 444 --------------------------YGVSISLQEAKKFHENYFKFYKSFKDWHDKVKEH 477 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 ++ + GR L Sbjct: 478 LDKHRSIELETLL------------------------GRKL------------------- 494 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFN 643 +Q D+L ++ +V VHDEI+ E D Sbjct: 495 --IAYKFTDAVNYPIQGSGSDLLKMAVVFFFKERNDLDAKVVNLVHDEILVEVAAKDIEK 552 Query: 644 ASMLY-HLMTSNPSWAK-GLPLKAEGYESKRYRK 675 A + M +P+ E S + K Sbjct: 553 AKEVLSSSMEKAGKLILKDVPVAFEMVVSDSWNK 586 >gi|42561209|ref|NP_975660.1| DNA polymerase I [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492707|emb|CAE77302.1| DNA POLYMERASE I [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321190|gb|ADK69833.1| DNA-directed DNA polymerase [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 911 Score = 226 bits (577), Expect = 8e-57, Method: Composition-based stats. Identities = 95/673 (14%), Positives = 193/673 (28%), Gaps = 134/673 (19%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-------- 58 D+E S L + + +I + D + + Sbjct: 320 DYE-DSINYLYVESLEEDYHKDKIIGIGISNNKGN-FYLDFKNKAQQLSFFEDTTLSSTD 377 Query: 59 ----EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 E L N+++ ++ +LK + + +V S + + Sbjct: 378 SLFEEFLNNSNLKKYTYDIKKTTYLLKNHKYNVLASNFDFDFMVACYSLNANV-ISDLSN 436 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 +KL M E + + F KG D + + + + + D + + Sbjct: 437 QIKL-VDNMIELETIDEIFGKGVKKNPDIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTN 495 Query: 175 LEP-LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV--- 230 + L + I +G +D Q + + ++ +++ L + Sbjct: 496 TYDLYLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEGQMKILVAEEIDNN 555 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++++ LF + L + TT + VL P + +R + ++ + Sbjct: 556 FNFSSPKQIQELLFDKLKLPNLEKG-TTSKEVLEKLITFHPIINLLLEHR-KYTKLYITY 613 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L + + D ++ + TGR S QN+ +E Sbjct: 614 LKGFEKFIFDDNKVHTIFN-HTLTNTGRLSSSYPNIQNISIRDNEQKE------------ 660 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 VR I + K + D + IE RVLA M+ E +KAF D+++ Sbjct: 661 -------------VRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQDADIHL 707 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 FN++ Q+T +QR I KV GL A+ + N Sbjct: 708 QAAKLIFNLSDDQITSEQRRIAKVFN--------------FGILYGLTDFGLANDLNMN- 752 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 +++ K + + + + E Sbjct: 753 -----------------------------VNQAKQMIKDYYSAFPSLLDFK---EKQVEI 780 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 G S R ++ + + +++ Sbjct: 781 ATNQGYITTL-----------------------SNRRRYIDELNSTNHNIRQFGKRI--- 814 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644 +Q + DIL M++ K IV +HDEI+ E D Sbjct: 815 ------AVNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVNDNQLEQT 868 Query: 645 SML-YHLMTSNPS 656 + + + Sbjct: 869 KKIVVSELENALE 881 >gi|15606966|ref|NP_214348.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5] gi|6015000|sp|O67779|DPO1_AQUAE RecName: Full=DNA polymerase I; Short=POL I gi|2984205|gb|AAC07735.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5] Length = 574 Score = 226 bits (576), Expect = 8e-57, Method: Composition-based stats. Identities = 110/694 (15%), Positives = 205/694 (29%), Gaps = 165/694 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L++D ET + L G D+ + D + + L++ + Sbjct: 24 YLYLDTETTGD---------------RIRLVQIG-DEENTYVIDLYEIQDI-EPLRKLIN 66 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKA-VGEALKLSS 120 + V HN F+ L I T++ + G +L V L S Sbjct: 67 ERGI--VGHNLKFDLKYLYRY---GIFPSATFDTMIASYLLGYERHSLNHIVSNLLGYSM 121 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV--------TREIF 172 K + + A + + ++ + D T +IF Sbjct: 122 DKSYQTSDWGASVLSDAQLKYAANDVIVLRELFPKMRDMLNELDAERGEELLKTRTAKIF 181 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 P++ E + G+ VDV + V+ E K QE Sbjct: 182 DLKSPVAIVEMAFVREVAKLEINGFPVDVEELTNKLKAVERETQKRIQEFYIKYRVD--- 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L + L + L+L + +T + L+S + + P ++ + + A Sbjct: 239 PLSPKQLASLLTKKFKLNLPKTPKGNVSTDDKALTSYQDVEPV--KLVLEIRKLKKIA-D 295 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 KL L E + +GR+ + +GA TGR S QN+ R Sbjct: 296 KLKELKEHL-KNGRVYPEFKQIGA-VTGRMSSAHPNIQNIHRD----------------- 336 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R A EG V++D + IE R+ A + L AF+ G+D++ Sbjct: 337 --------------MRGIFKAEEGNTFVISDFSQIELRIAAEYVKDPLMLDAFKKGKDMH 382 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + ++TK++R + K + L Y AK + A Sbjct: 383 RYTASVVLGKKEEEITKEERQLAKAINFGLIYGISAKGLAEYAK---------------- 426 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + +++ + + E + + + + Sbjct: 427 ----------------------LGYGVEISLEEAQVLRERFFKNFKAFKEWHDRVKKELK 464 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + K + GR + Sbjct: 465 E------------------------KGEVKGHTLLGRRFSANTFND-------------- 486 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVHDEIVCETPDTDEFN 643 +Q D+L ++ N K G +V VHDEIV E Sbjct: 487 -------AVNYPIQGTGADLLKLAVLLFDANLQKKGIDAKLVNLVHDEIVVECEKEKAEE 539 Query: 644 ASMLYHL-MTSNPSWAK-GLPLKAEGYESKRYRK 675 + M + +P++ E ++R+ K Sbjct: 540 VKEILEKSMKTAGKIILKEVPVEVESVINERWTK 573 >gi|312871738|ref|ZP_07731826.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a] gi|311092680|gb|EFQ51036.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a] Length = 883 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 87/669 (13%), Positives = 188/669 (28%), Gaps = 149/669 (22%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85 F+ + + D D + Q LK+ LE+ ++ + + Sbjct: 337 AQYAGFSVKI-KQKIYVCD---DVTLLQEAPLKKILEDKNIAKQVFDLK------RNYVG 386 Query: 86 L---DIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 L DI + ++ + + + + + +E + E Sbjct: 387 LQRLDITLSNVTDDIMLASYIADSENN----ARDIGVLANSYQE-----SYVQSDEIIYG 437 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQT 191 + H + V V ++ ++ P + + + + Sbjct: 438 KGKKQ---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQVHLYKNIEIPIAVILAK 494 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G V + +DV T L ++ L + ++L LF + L Sbjct: 495 MEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFEKLKLTP 553 Query: 252 EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 T+ +T VL K +P + + R S+ +N L++ + +DG++ Sbjct: 554 AKKTKTGYSTSVDVLEKLKYQSPIVDDILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRF 612 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + TGR S QN+P + +R Sbjct: 613 LQ-TLTATGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAF 646 Query: 369 IA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTK 426 + + L D + +E RVLA ++ E+ L+AF+ G D++ T + F ++ +VT Sbjct: 647 VPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTP 706 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 R K + + Y L ++ N+ E++ +++ + Sbjct: 707 LMRRHAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAV 761 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + E + + R+ K+ + + + G A K Sbjct: 762 KLAREKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI--- 813 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 + +L R Sbjct: 814 --------------------------------AMIKMQSELERRK--------------- 826 Query: 607 RDILAEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664 L M+ ++ + P + L +M +PL Sbjct: 827 ---LKTKMILQIHDE-----------LLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLI 870 Query: 665 AEGYESKRY 673 A+ + Sbjct: 871 ADANWGHNW 879 >gi|325912106|ref|ZP_08174504.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D] gi|325476056|gb|EGC79224.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D] Length = 883 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 86/669 (12%), Positives = 189/669 (28%), Gaps = 149/669 (22%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85 F+ + + D D + Q LK+ LE+ ++ + + Sbjct: 337 AQYAGFSVKI-KQKIYVCD---DVTLLQEAPLKKILEDKNIAKQVFDLK------RNYVG 386 Query: 86 L---DIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 L DI + ++ + + + + + +E + E Sbjct: 387 LQRLDITLSNVTDDIMLASYIADSENN----ARDIGVLANSYQE-----SYVQSDEIIYG 437 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQT 191 + H + V V ++ ++ P + + + + Sbjct: 438 KGKKQ---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQVHLYKNIEIPIAVILAK 494 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G V + +DV T L ++ L + ++L LF + L Sbjct: 495 MEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFEKLKLTP 553 Query: 252 EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 T+ +T VL + +P + + R S+ +N L++ + +DG++ Sbjct: 554 AKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRF 612 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + TGR S QN+P + +R Sbjct: 613 LQ-TLTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAF 646 Query: 369 IA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTK 426 + + L D + +E RVLA ++ E+ L+AF+ G D++ T + F ++ +VT Sbjct: 647 VPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTP 706 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 R K + + Y L ++ N+ E++ +++ + Sbjct: 707 LMRRHAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAV 761 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + E + + R+ K+ + + + G A K Sbjct: 762 KLAREKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI--- 813 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 + +L R Sbjct: 814 --------------------------------AMIKMQSELERRK--------------- 826 Query: 607 RDILAEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664 L M+ ++ + P + +L +M +PL Sbjct: 827 ---LKTKMILQIHDE-----------LLFDVPSEELDLIKILVPKIMQQAAQ--LDVPLI 870 Query: 665 AEGYESKRY 673 A+ + Sbjct: 871 ADANWGHNW 879 >gi|269127065|ref|YP_003300435.1| DNA polymerase I [Thermomonospora curvata DSM 43183] gi|268312023|gb|ACY98397.1| DNA polymerase I [Thermomonospora curvata DSM 43183] Length = 906 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 95/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%) Query: 28 VCVILFAFGFDDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 V A + L E L + H++ +L Sbjct: 357 GEVDALAVATASGAAVYVEPAELGEADERALAEWLADPHRPKAIHDAK--GPMLALAARG 414 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDR 145 T + A +G L+ +++ E E + + R Sbjct: 415 MTLAGVTSDTALAAYLALPGQRTFDLGDLVLRYLHKELREHAEPGGQLTIDGIADDDAAR 474 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 A E D + R L E L + + G VDV Sbjct: 475 ELAVRARAVLELAE--ALDRDLERR--GAARLLHEVELPLTGVLAAMERAGIAVDVDHFI 530 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRV 262 L+ + + +Q+ + + ++++ LF E GL T+T T Sbjct: 531 QLSASLGGQAKDTEQQAHAAVGH-EFNLGSPKQVQQVLFEELGLPKTKRTKTGYTTDSEA 589 Query: 263 LSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 L+S K P + ++ + +++L+ DGR+ T + A+ TGR S Sbjct: 590 LNSLRAKSDHPVLEHILR-WREVAKLKSI-VDSLIPMAAEDGRIHTTFNQMVAA-TGRLS 646 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVA 379 QN+P + +R + EG + L+ A Sbjct: 647 STDPNLQNIPIRTAEGR-------------------------QIREGFVVGEGYECLLTA 681 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R++A ++G++ ++AF +G D + T +R F + P Q+ + RA K M L Sbjct: 682 DYSQIELRIMAHLSGDEALIEAFTSGADFHTITASRVFGLPPEQIDGELRARIKAMNYGL 741 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y + L + V +++ ++ + + + + Sbjct: 742 AYGLSP-----FGLASQLGITPDEARVLMEEYFQQFGGVRDYLQGVVRRARQDGYTETI- 795 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 +RR +P + + Sbjct: 796 ----------------------------------------LGRRRYLPDLTSDNRQRR-- 813 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + +L G+ + + ++ R G + ++Q Sbjct: 814 -EMAERMALNAPIQGSAADIIKVASLRVDRALRERGLASRMLLQ-------------VHD 859 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674 +V E + L MT PL+ + ++ Sbjct: 860 E-----------LVFEVAPGELEELKELVREQMTGAYE--LRAPLEVAMGTGRTWQ 902 >gi|119963436|ref|YP_947809.1| DNA polymerase I [Arthrobacter aurescens TC1] gi|119950295|gb|ABM09206.1| DNA polymerase I [Arthrobacter aurescens TC1] Length = 880 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 99/654 (15%), Positives = 183/654 (27%), Gaps = 133/654 (20%) Query: 37 FDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 ++ + + VL L++ + V H L L + Sbjct: 338 VRNNGAAYIELAGLDAAAESVLARWLQDPEEAKVLHEFKSALKALHNR-GLGLE-GVVDD 395 Query: 96 TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 T + + E + + I+ + Sbjct: 396 TSISGYLIQPDRRSYDLAE--------LAQVHLKISLAA---AAAQSGQLELDLSGDTDE 444 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAH 205 + V + K E ++ + + + + G V Sbjct: 445 VAATALVQHAAVVHALSKHFEKELAEIKADALLTTLELPVARVLAQMELTGIFVSTDRMD 504 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRV 262 + ++ + V + ++L+T LF E GL ++ T Sbjct: 505 EQLADLTKVIENAQEQAFAAIGHEV-NLGSPKQLQTVLFDELGLPKTKKIKSGYTTDAAS 563 Query: 263 LSSN-KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 L +K + + +S+ A + TL +++ D R+ T A+ TGR S Sbjct: 564 LKGLLEKTGHEFLVQLMAHRESSKLA-QMVETLKKSVADDARIHTTYAQNIAA-TGRISS 621 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVAD 380 QN+P S VRS + SEG + L+ AD Sbjct: 622 NNPNLQNIPVRSEEGRR-------------------------VRSIFMVSEGYECLLSAD 656 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R++A ++G+Q ++A++ GEDL+ AR FNV PA+VT R+ K M L Sbjct: 657 YSQIEMRIMAHLSGDQALIQAYKDGEDLHRFVGARIFNVEPAEVTSAMRSKVKAMSYGLA 716 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L ++ + + + +++ Sbjct: 717 YG-----LTSFGLSKQLEISVDEARTLMKDYYDRFGAVRAYLDGVRDQARVDGYT----- 766 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 A I +RR +P + + Sbjct: 767 ------------------------------------ATIEGRRRYLPDLTSTNRQA---- 786 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 + N + + R G E Q + Sbjct: 787 ------REAAERIALNSPIQGSAADIIKRAML--GVSAELASQGL--------------- 823 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + L M S +PL + + Sbjct: 824 KSRMLLQVHDELVLEVAPGEREAVEKLVIEQMGSAAE--LSVPLDVQIGVGSSW 875 >gi|238909183|ref|YP_002939650.1| DNA polymerase I [Eubacterium eligens ATCC 27750] gi|238873420|gb|ACR73129.1| DNA polymerase I [Eubacterium eligens ATCC 27750] Length = 724 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 92/744 (12%), Positives = 200/744 (26%), Gaps = 187/744 (25%) Query: 9 ETR------SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49 ET +D+ G+ Y + ++ D P H Sbjct: 76 ETYLTGVSEYVLDVETTGLDVY--NDILVGICLYNPDLPSFYVPFNHTDLQNKRVEGQMT 133 Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109 + V+ L N + + HN F+ V+ + I + W T + Sbjct: 134 EEECKAVMLPYLANGSLKCINHNIKFDDKVVTFQWGQRIA-NVWWDTNIAGWVLNEN--- 189 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 E L + I + P + +F Y D T Sbjct: 190 ----EKHGLKPMYNKY----ILNGEGSDEDFGDLFEGIPCNYIPIDIFAIYGANDGFKTW 241 Query: 170 EIFKRLEPLSSKEQEL-----------------WYLDQTINDRGYCVDVALAHTLNQIVD 212 +++ + ++ + + RG + A L+ + Sbjct: 242 ALYQFQKKYLREDHPRADYRKLYHVFRDIEMPLIDVCMDMELRGVEIREDYAKELSVKFN 301 Query: 213 VERTKLDQELESL------------------TYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 E + ++ + + +++ + L Sbjct: 302 AEMAEKEKLCDEYVAKFDKFIEENPTLMRLTKGTKKINYNSPQQVACLFYDIFKLKSVSR 361 Query: 255 TET--TCQRVLSSNKKL---------TPQAIQVFNN--RMRASRSAVLKLNTLVEA-MNS 300 E T +++ ++ + N ++ + E Sbjct: 362 KEPRGTGDKIVQQHRNKAKKAGTKKGEEFIQFLDNYQRYKECGNLLGTYIDKIPEVKCAK 421 Query: 301 DGRLRGTLQFLGASRTGRWSGCV----FPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + T GA +TGR+S QN+P +S Sbjct: 422 TNAVHTTYNQYGA-KTGRFSSSDTVTKINLQNIPSHEKS--------------------- 459 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R A +G K V D + IE RVL++++G++ +A+ G+DLY ++ Sbjct: 460 -------IRKIFRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKV 512 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 + V ++ +N Sbjct: 513 YGVPYEDC------------------------REFYPDGTVNAEGKHRRTTM-------- 540 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 + + + +++ + + ++ +L ++ + E+ Sbjct: 541 KSVLLGIMYERGAKAIGEQFDRSAEWAQKLIDDFYKSFPKIQQLRLKVEKMAEEY--GYV 598 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 I ++R +P + LP Y++ + Sbjct: 599 TTIQGRKRRLPE-----------MQLPDHDDYRYQEAH--------------------RQ 627 Query: 597 LTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFN-ASMLYH 649 ++Q S DI+ M+ +V+TVHDE++ E P+ A +L + Sbjct: 628 SLNAVIQGSSADIMKLAMIAIYNDPQYKALDCHMVITVHDELIMEVPEDHIKEGADLLVN 687 Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673 M LP+ + + + Sbjct: 688 TMKRVGHSLIDLPMSVDAEVNDYW 711 >gi|313665520|ref|YP_004047391.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50] gi|312949975|gb|ADR24571.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50] Length = 911 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 94/664 (14%), Positives = 191/664 (28%), Gaps = 133/664 (20%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------PVMP 54 D+E S L + + +I + D + Sbjct: 320 DYE-DSINYLYVESLEEDYHKDKIIGIGISNNKGN-FYLDFKNKVQQLSFFEDTTLSSTD 377 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + +E L N ++ ++ +LK +P + +V S + Sbjct: 378 NLFEEFLNNKNLKKYTYDIKKTTYLLKNHQYNVLPSNFDFDFMVACYSLNANVV-SDLSN 436 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 +KL +Q EE + F KG D + + + + + D + + Sbjct: 437 QIKLVNQ-QEEIETNEIIFGKGVKKNPDIDIDIKSKYISKKAYLLKKYSDKLIEQLKQTN 495 Query: 175 LEP-LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV--- 230 + L + I +G +D + + + ++ +++ + + Sbjct: 496 TYDLYLKIDYPLIEVLYDIEVQGILIDKEQLKLQTEQILKKINHIEWQMKIMVAEEIDNN 555 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++++ LF + L + TT + VL P + +R + ++ Sbjct: 556 FNFSSPKQIQELLFDKLKLPNLEKG-TTSKEVLEKLITFHPIINLLLEHR-KYTKLYTTY 613 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L + + D ++ + TGR S QN+ +E Sbjct: 614 LKGFEKFIFDDNKVHTIFN-HTLTNTGRLSSSYPNIQNISIRDNEQKE------------ 660 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 VR I + K + D + IE RVLA M+ E +KAF D+++ Sbjct: 661 -------------VRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQNADIHL 707 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 FN++ Q+T +QR I KV GL A+ + N Sbjct: 708 QAAKLIFNISDNQITSEQRRIAKVFN--------------FGILYGLTDFGLANDLNMN- 752 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 +++ K + + + + E Sbjct: 753 -----------------------------VNQAKQMIKDYYSAFPSLLDFK---EKQVEI 780 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 G S R ++ + + +++ Sbjct: 781 ATNQGYITTL-----------------------SNRRRYISELNSTNHNIRQFGKRI--- 814 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644 +Q + DIL M++ K IV +HDEI+ E + Sbjct: 815 ------AVNTPIQGTASDILKVAMISIYKKIKEQNLDAKIVCQIHDEIILEVDNNQLEQT 868 Query: 645 SMLY 648 + Sbjct: 869 KKIV 872 >gi|90101283|sp|Q7TQ07|DPOLN_MOUSE RecName: Full=DNA polymerase nu Length = 864 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 94/649 (14%), Positives = 187/649 (28%), Gaps = 151/649 (23%) Query: 67 TIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPS---ALKAVGEALK 117 +V N+ F RTVL + D V A + + + K Sbjct: 314 PVVCFNAKDFVRTVL-QLYGEDGSWKHVADFVGLDPRVAAWLIDPSDTAPSFEDL--VAK 370 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + + K + RN + L Y +T ++ +L+ Sbjct: 371 HLEKSIT---------VKPSSTFREASRNTLSQNVFMNLKILY-----DLTMDLCSKLKA 416 Query: 178 LSSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + L + + + VD + ++ +L+QE + Sbjct: 417 YGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAG-EQF 475 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE-----------TTCQRVLSSNKKLTPQAIQVFNNR 280 +L+ LF + LHL + +T + +L+S + L P + R Sbjct: 476 LIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYR 535 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L+ M G + T G + TGR S Q + + + Sbjct: 536 Q-VHKIKSTFIDGLLAYM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPW 592 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 ++T P R+ ++SEG + AD + IE R+LA ++G+ LK Sbjct: 593 NFKGKEEETVTISP----------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLK 642 Query: 401 AFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 F+ +D++ T ++ ++ +VT R K + ++ Y Sbjct: 643 LFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYG---------------- 686 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + QK+ ++ Sbjct: 687 ----------------------------AGKERLAACLGVTVLEATHFLERFLQKYKKIK 718 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + GR + Sbjct: 719 DFAQTVIGQCHSA--------------------------GYVTSILGRRRPLPRICAQDQ 752 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDE 631 Q R+ +VQ + D+ M+ + A +V +HDE Sbjct: 753 ---QLRAQAERQA------VNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDE 803 Query: 632 IVCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674 ++ E DT A+++ +M +PLK + + Sbjct: 804 LLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSWG 852 >gi|46309579|ref|NP_862905.1| DNA polymerase nu [Mus musculus] gi|32364063|gb|AAN39837.2| DNA polymerase N [Mus musculus] Length = 866 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 94/649 (14%), Positives = 187/649 (28%), Gaps = 151/649 (23%) Query: 67 TIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPS---ALKAVGEALK 117 +V N+ F RTVL + D V A + + + K Sbjct: 316 PVVCFNAKDFVRTVL-QLYGEDGSWKHVADFVGLDPRVAAWLIDPSDTAPSFEDL--VAK 372 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + + K + RN + L Y +T ++ +L+ Sbjct: 373 HLEKSIT---------VKPSSTFREASRNTLSQNVFMNLKILY-----DLTMDLCSKLKA 418 Query: 178 LSSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + L + + + VD + ++ +L+QE + Sbjct: 419 YGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAG-EQF 477 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE-----------TTCQRVLSSNKKLTPQAIQVFNNR 280 +L+ LF + LHL + +T + +L+S + L P + R Sbjct: 478 LIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYR 537 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L+ M G + T G + TGR S Q + + + Sbjct: 538 Q-VHKIKSTFIDGLLAYM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPW 594 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 ++T P R+ ++SEG + AD + IE R+LA ++G+ LK Sbjct: 595 NFKGKEEETVTISP----------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLK 644 Query: 401 AFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 F+ +D++ T ++ ++ +VT R K + ++ Y Sbjct: 645 LFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYG---------------- 688 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + QK+ ++ Sbjct: 689 ----------------------------AGKERLAACLGVTVLEATHFLERFLQKYKKIK 720 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + GR + Sbjct: 721 DFAQTVIGQCHSA--------------------------GYVTSILGRRRPLPRICAQDQ 754 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDE 631 Q R+ +VQ + D+ M+ + A +V +HDE Sbjct: 755 ---QLRAQAERQA------VNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDE 805 Query: 632 IVCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674 ++ E DT A+++ +M +PLK + + Sbjct: 806 LLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSWG 854 >gi|257056582|ref|YP_003134414.1| DNA polymerase I [Saccharomonospora viridis DSM 43017] gi|256586454|gb|ACU97587.1| DNA polymerase I [Saccharomonospora viridis DSM 43017] Length = 901 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 101/656 (15%), Positives = 196/656 (29%), Gaps = 129/656 (19%) Query: 33 FAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 A + D + L E L + ++ V H+ L + Sbjct: 355 VALAAPNGEGAYLDVTTLTEDDERALGEWLADENIHKVGHSLKKALHGL-RSRGWRLA-G 412 Query: 92 RWICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 + T + A L + GKEL + +G+ L D + Sbjct: 413 LVMDTELAAYLVRPGQRSFKLDDLVLRY--------LGKELRSEGVEGDGQLSLLDTDSD 464 Query: 149 NHREAWRLFGEYCKGDVTVTR--EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALA 204 N L +++ E+ E L + + G VD+ + Sbjct: 465 NEIVRRELVRARAVLELSSALSAELAAIGATTLLADIELPLLSMITDLEAAGIAVDIDVL 524 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261 L + ++ S+ + + ++L+ LF E G+ T+T T Sbjct: 525 TELEAHYANRVKQATEQAYSVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDAD 583 Query: 262 VLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 L + + P + +R A++ + L++A+ DGR+ TL + TGR Sbjct: 584 ALQTLYEKTEHPFLQYLLEHR-DATKLRST-VEGLIKAVADDGRIHTTLHQ-TITATGRL 640 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVV 378 S QN+P + +R + EG +L+ Sbjct: 641 SSVDPNLQNIPVRTDEGRR-------------------------IREAFVVGEGYAELMT 675 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++ ++ ++AF +G D + T AR F+V P +VT +QRA K M Sbjct: 676 ADYSQIEMRIMAHLSNDEALIEAFHSGFDFHAATAARVFDVDPTEVTGEQRAKIKAMNYG 735 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 L Y + L ++T + + ++ + E + + Sbjct: 736 LAYG-----LSAYGLSQQLRISTEEARALMDEYFLRFGGVRDYLHSVVERAAKEGYTETI 790 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 G R+ ++ + + E+ N + Sbjct: 791 FGR---------RRYLPDLTSTNRQRREMAERMALN------------APIQGSAADIIK 829 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 + ML R+L + + ++ Sbjct: 830 VAMLGVHRALAEAGLRSRV------------------------------------LLQVH 853 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ E D + L M S +PL+ + + Sbjct: 854 DE-----------LMLEVADGEHAQVEELVRREMGSAYE--LSVPLEVSVGYGRSW 896 >gi|329920128|ref|ZP_08276959.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G] gi|328936582|gb|EGG33026.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G] Length = 883 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 86/669 (12%), Positives = 186/669 (27%), Gaps = 149/669 (22%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85 F+ + + D D + Q L + LE+ ++ + + Sbjct: 337 AQYAGFSVKI-KQKIYVCD---DVTLLQEAPLNKILEDKNIAKQVFDLK------RNYVG 386 Query: 86 L---DIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 L DI + ++ + + L + + +E E Sbjct: 387 LQRLDITLSNVTDDIMLASYIADSENN----AGDLGVLANSYQEF-----YVQSDEIIYG 437 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQT 191 + H + V V ++ ++ P + + + + Sbjct: 438 KGKKQ---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAK 494 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G V + +DV T L ++ L + ++L LF + L Sbjct: 495 MEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFEKLKLTP 553 Query: 252 EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 T+ +T VL + +P + + R S+ +N L++ + +DG++ Sbjct: 554 AKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRF 612 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + TGR S QN+P + +R Sbjct: 613 LQ-TLTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAF 646 Query: 369 IA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTK 426 + + L D + +E RVLA ++ E+ L+AF+ G D++ T + F ++ +VT Sbjct: 647 VPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTP 706 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 R K + + Y L ++ N+ E++ +++ + Sbjct: 707 LMRRHAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAV 761 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + E + + R+ K+ + + + G A K Sbjct: 762 KLAREKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI--- 813 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 + +L R Sbjct: 814 --------------------------------AMIKMQSELERRK--------------- 826 Query: 607 RDILAEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664 L M+ ++ + P + L +M +PL Sbjct: 827 ---LKTKMILQIHDE-----------LLFDVPSEELDLIKTLVPKIMQQAAQ--LDVPLI 870 Query: 665 AEGYESKRY 673 A+ + Sbjct: 871 ADANWGHNW 879 >gi|76798043|ref|ZP_00780300.1| DNA polymerase I [Streptococcus agalactiae 18RS21] gi|76586602|gb|EAO63103.1| DNA polymerase I [Streptococcus agalactiae 18RS21] Length = 811 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 86/628 (13%), Positives = 169/628 (26%), Gaps = 153/628 (24%) Query: 8 FETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALE 62 E S D G + ED L + + + + Q K+AL Sbjct: 315 TEMFSDNDFYYFEMLGDNYHVED----LIGIAWGNSDTIY--ATSNVSLLQEALFKKALS 368 Query: 63 NTDVTIVAHNSYFERT---VLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGE 114 ++ VL FN+D+P T + L S + + Sbjct: 369 KP--IKT-----YDFKRSKVLLNRFNIDLP-EPAFDTRLAKYLLSTTEDNLVSTIARLYT 420 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L L + GK + + + + +++ Sbjct: 421 NLPLDTDDAVYGKGAKRAIPEKTR----------FLEHLAKKVKVLVDSEANIMQQLKAN 470 Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + EQ L + + RG V + + L QE+ L + Sbjct: 471 EQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQ-EFN 529 Query: 233 SRCLEKLKTWLFLETGLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 ++L LF GL + T+ +T VL ++P ++ R ++ Sbjct: 530 INSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQ-ITKLQ 588 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L + + DG++ ++TGR S QN+P Sbjct: 589 STYIIGLQDYILEDGKIHTRYVQD-LTQTGRLSSSDPNLQNIPVRLEQGR---------- 637 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 +R + SE L+ +D + IE RVLA ++ ++ + AF+ G Sbjct: 638 ---------------LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGA 682 Query: 407 DLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D++ +T R F + P VT + R K + G++ + Sbjct: 683 DIHTSTAMRVFGIEKPENVTPNDRRNAKAVNF--------------GIVYGISDFGLS-- 726 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 ++ + +++ + + Sbjct: 727 ----------------------------HNLGIPRKLAKQYIDTYFERYPGIKNYMETVV 758 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + + + R D+ + + Sbjct: 759 REAKD--------------------------KGYVETLFHRRRSLPDINSRNFNIRQF-- 790 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEG 613 R +Q + DIL Sbjct: 791 -AERTAINSP------IQGSAADILKMQ 811 >gi|91091764|ref|XP_969311.1| PREDICTED: similar to DNA polymerase theta [Tribolium castaneum] gi|270001085|gb|EEZ97532.1| hypothetical protein TcasGA2_TC011380 [Tribolium castaneum] Length = 1588 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 87/660 (13%), Positives = 192/660 (29%), Gaps = 150/660 (22%) Query: 17 TKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74 G+ + + FA + D +++ + TI+ +N Sbjct: 1054 RTIGLNHTIKSPEVPISGFALFWGHSTAYYLDVAKKRETIDLIRHIVNEQQKTIIMYNCK 1113 Query: 75 FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134 + L ++ R V + + +L+ +C Sbjct: 1114 QQIKTLHKWHGVEFR-SRVHDPKVADWLLQPEG--------------QDKTLHQLVETYC 1158 Query: 135 KGETHECLYD---RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191 + D R+ +W + + V L + E + + Sbjct: 1159 PELPLDQGQDAKLRSIFECYLSWHVLKN-----IEVELSKSNLLT-VFDTEMSIMRILAN 1212 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 I G +V+ L ++ E ++++ ++ S +L L + Sbjct: 1213 IELAGIGANVSTLSNLVDLLTRELKAIERQGHAIAGRH-FSFASSRQLAKILQSDNNSK- 1270 Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 + L + P A + + S + L L+ + +GR+ G Sbjct: 1271 KSLQK-----------NDNPLASLILK-WRKISATIGKTLQPLIRLV-ENGRIFGCYVTH 1317 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 A+ GR + QN+ + + + R + S Sbjct: 1318 TAT--GRITMHEPNLQNVAK----------------------DFDIDGVEVSCRKAFVPS 1353 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 +G +V AD +E RVLA ++ ++ D++ A+ N++ +VT++ R Sbjct: 1354 QGHVMVSADFCQLELRVLAHLSRDEVLGGILRRKGDIFRAIAAKWNNISENEVTEELRQR 1413 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y G+KA + LN + Sbjct: 1414 AKQIIYGIIYGMGSKALAEQ-----LNTDEAQ---------------------------- 1440 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 R + +R + V + +E+ + +T Sbjct: 1441 -----------ATRFMQTFRNAYPGVQKYISEIIETCRKT-------------------- 1469 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + +GR + + + + Q R+ +Q + D++ Sbjct: 1470 ------GFVETLAGRRRFLAHINHKNGAVKS---QAERQA------VNTTIQGSAADLVK 1514 Query: 612 EGMMNAT-----KAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKA 665 M+ + +VL +HDE++ E P+ + +L M + + P+K Sbjct: 1515 MAMVRLETVFLGEKEVKLVLHLHDELLYEVPEGSLGSFVRILKTEMEGSVKLSIPFPVKV 1574 >gi|312872962|ref|ZP_07733022.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1] gi|311091484|gb|EFQ49868.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1] Length = 883 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 86/669 (12%), Positives = 186/669 (27%), Gaps = 149/669 (22%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85 F+ + + D D + Q L + LE+ ++ + + Sbjct: 337 AQYAGFSVKI-KQKIYVCD---DVTLLQEAPLNKILEDKNIAKQVFDLK------RNYVG 386 Query: 86 L---DIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 L DI + ++ + + L + + +E E Sbjct: 387 LQRLDITLSNVTDDIMLASYIADSENN----AGDLGVLANSYQEF-----YVQSDEIIYG 437 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQT 191 + H + V V ++ ++ P + + + + Sbjct: 438 KGKKQ---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAK 494 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G V + +DV T L ++ L + ++L LF + L Sbjct: 495 MEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFDKLKLTP 553 Query: 252 EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 T+ +T VL + +P + + R S+ +N L++ + +DG++ Sbjct: 554 AKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRF 612 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + TGR S QN+P + +R Sbjct: 613 LQ-TLTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAF 646 Query: 369 IA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTK 426 + + L D + +E RVLA ++ E+ L+AF+ G D++ T + F ++ +VT Sbjct: 647 VPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTP 706 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 R K + + Y L ++ N+ E++ +++ + Sbjct: 707 LMRRHAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAV 761 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + E + + R+ K+ + + + G A K Sbjct: 762 KLAREKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI--- 813 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 + +L R Sbjct: 814 --------------------------------AMIKMQSELERRK--------------- 826 Query: 607 RDILAEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664 L M+ ++ + P + L +M +PL Sbjct: 827 ---LKTKMILQIHDE-----------LLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLI 870 Query: 665 AEGYESKRY 673 A+ + Sbjct: 871 ADANWGHNW 879 >gi|261878884|ref|ZP_06005311.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361] gi|270334524|gb|EFA45310.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361] Length = 661 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 52/339 (15%), Positives = 100/339 (29%), Gaps = 46/339 (13%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQ---VL 57 L +D ET S + + ++ +F + D Q + Sbjct: 348 KILSLDTETTSTSPM----------EAELVGLSFSVKEKEAFYVAIPKDREEALQYVNIF 397 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 K E+ ++ V N ++ VL+ +DI + T++ + + E Sbjct: 398 KPLYEDPEILKVGQNIKYDYVVLRNY-GVDIQ-GKMFDTMLAHYLIQPELRHNMDYMAET 455 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L + +ELI K + EY D +T + L Sbjct: 456 LLH--YQTMHIEELIG---------PKGKGQKNMRDLSPEEIYEYAAEDADITLRLKNVL 504 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 EP E L + + G +D + + + + ++ L Sbjct: 505 EPQLKEVGAKSLFWDIEMPLVKVLADMELNGVLLDTESLNEIERTFTERMQQYERHAFEL 564 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + +++ LF + + T+T T + VL K P + N R Sbjct: 565 AG-EEFNISSPKQVGEILFGKMKIVDKPKKTKTGQFVTSEEVLLQLKDKAPIVEDILNYR 623 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 + + L + +N T + TGR Sbjct: 624 -GMKKLLGTYVEALPKLINPRTGHIHTSFNQAVTATGRL 661 >gi|187954717|gb|AAI41102.1| DNA polymerase N [Mus musculus] Length = 866 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 94/648 (14%), Positives = 189/648 (29%), Gaps = 149/648 (22%) Query: 67 TIVAHNSY-FERTVLKACFNLD----IPIHRWICTLVLARSNGLPS---ALKAVGEALKL 118 +V N+ F RTVL+ D + + V A + + + K Sbjct: 316 PVVCFNAKDFVRTVLQLYGEDDSWKHVADFVGLDPRVAAWLIDPSDTAPSFEDL--VAKH 373 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 + + K + RN + L Y +T ++ +L+ Sbjct: 374 LEKSIT---------VKPSSTFREASRNTLSQNVCMNLKILY-----DLTMDLCSKLKAY 419 Query: 179 SSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + L + + + VD + ++ +L+QE + Sbjct: 420 GLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAG-EQFL 478 Query: 233 SRCLEKLKTWLFLETGLHLEDLTE-----------TTCQRVLSSNKKLTPQAIQVFNNRM 281 +L+ LF + LHL + +T + +L+S + L P + R Sbjct: 479 IMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQ 538 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ L+ M G + T G + TGR S Q + + + Sbjct: 539 -VHKIKSTFIDGLLAYM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPWN 595 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 ++T P R+ ++SEG + AD + IE R+LA ++G+ LK Sbjct: 596 FKGKEEETVTISP----------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKL 645 Query: 402 FET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F+ +D++ T ++ ++ +VT R K + ++ Y Sbjct: 646 FQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYG----------------- 688 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + QK+ ++ + Sbjct: 689 ---------------------------AGKERLAACLGVTVLEATHFLERFLQKYKKIKD 721 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + GR + Sbjct: 722 FAQTVIGQCHSA--------------------------GYVTSILGRRRPLPRICAQDQ- 754 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEI 632 Q R+ +VQ + D+ M+ + A +V +HDE+ Sbjct: 755 --QLRAQAERQA------VNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDEL 806 Query: 633 VCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674 + E DT A+++ +M +PLK + + Sbjct: 807 LFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSWG 854 >gi|253317126|ref|ZP_04840339.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 284 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 93/278 (33%), Positives = 131/278 (47%), Gaps = 15/278 (5%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L SQK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ E W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265 + + +L WL E GL + +L + T Q L Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKE 276 >gi|315653652|ref|ZP_07906572.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195] gi|315489014|gb|EFU78656.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195] Length = 890 Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats. Identities = 86/669 (12%), Positives = 186/669 (27%), Gaps = 149/669 (22%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85 F+ + + D D + Q L + LE+ ++ + + Sbjct: 344 AQYAGFSVKI-KQKIYVCD---DVTLLQEAPLNKILEDKNIAKQVFDLK------RNYVG 393 Query: 86 L---DIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 L DI + ++ + + L + + +E E Sbjct: 394 LQRLDITLSNVTDDIMLASYIADSENN----AGDLGVLANSYQEF-----YVQSDEIIYG 444 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQT 191 + H + V V ++ ++ P + + + + Sbjct: 445 KGKKQ---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAK 501 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G V + +DV T L ++ L + ++L LF + L Sbjct: 502 MEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFEKLKLAP 560 Query: 252 EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 T+ +T VL + +P + + R S+ +N L++ + +DG++ Sbjct: 561 AKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRF 619 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + TGR S QN+P + +R Sbjct: 620 LQ-TLTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAF 653 Query: 369 IA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTK 426 + + L D + +E RVLA ++ E+ L+AF+ G D++ T + F ++ +VT Sbjct: 654 VPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTP 713 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 R K + + Y L ++ N+ E++ +++ + Sbjct: 714 LMRRHAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAV 768 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + E + + R+ K+ + + + G A K Sbjct: 769 KLAREKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI--- 820 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 + +L R Sbjct: 821 --------------------------------AMIKMQSELERRK--------------- 833 Query: 607 RDILAEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664 L M+ ++ + P + L +M +PL Sbjct: 834 ---LKTKMILQIHDE-----------LLFDVPSEELDLIKTLVPKIMQQAAQ--LDVPLI 877 Query: 665 AEGYESKRY 673 A+ + Sbjct: 878 ADANWGHNW 886 >gi|328955794|ref|YP_004373127.1| DNA polymerase I [Coriobacterium glomerans PW2] gi|328456118|gb|AEB07312.1| DNA polymerase I [Coriobacterium glomerans PW2] Length = 942 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 93/597 (15%), Positives = 165/597 (27%), Gaps = 123/597 (20%) Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 L+I + R T + A + G + R Sbjct: 456 LEIDVSRTFDTTLAAYLLDSARSHFDDG--YIADTYLSVSLPPARGEAGAPTDAPVASAR 513 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 R A E+ E L + + G VD Sbjct: 514 AAAVARAAREPLAR--------ALELRGAKNVFWDIETPLVPVLVAMERTGMLVDPGCLK 565 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTC 259 L++ ++ + +L + +L + +L LF GL + L + +T Sbjct: 566 DLSEGLESQIDELAVRIRALAGDSDFNISSPMQLSHILFDVMGLPTKGLKKTHRGYYSTN 625 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 RVL + + R ++ L+TL DGR+ T + TGR Sbjct: 626 ARVLDELAQDNELVRLILEYR-EKTKIKSTYLDTLGPLRRQDGRVHTTYNQ-TITATGRL 683 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QN+P S + V++ A EG + Sbjct: 684 SSSNPNLQNIPTRSE-------------------------LGHTVKTAFSAGEGALFLAV 718 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R+LA ++G++ ++AF GED + T AR F V +VT R+ K + + Sbjct: 719 DYSQIELRLLAHLSGDEHLIRAFREGEDFHAETAARVFGVPVDEVTPRLRSRAKAVNFGI 778 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y Q + L++ + E + F E + Sbjct: 779 VYGQ-----QAFGLSQTLDIPVSEAQEMIDRYFEAYPGVRAFLDRTVAEAAERGYAETMF 833 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 +RR +P + MK Sbjct: 834 -----------------------------------------GRRRPIPELRMKNATQRSF 852 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R+ +N ++ E + D+ A+ ++ Sbjct: 853 ---------------GERTAMNHPMQGSAADIIKIAMRRVAERL---HGGDLHAKMILQV 894 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 E+ E P + + +M+ M +PL A+ + Sbjct: 895 HD-----------ELDFECPIAEVADVSAMVREEMEGVVK--LKVPLIADVSTGVTW 938 >gi|237755371|ref|ZP_04583999.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5] gi|237692455|gb|EEP61435.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5] Length = 586 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 99/694 (14%), Positives = 204/694 (29%), Gaps = 152/694 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV--HDPVMPQVLKEA 60 L++D E + K + + L G D+ + D + + V+ ++ Sbjct: 23 YLYLDTE-----VMIKDFENIDFFNDKIRLIQIG-DEENTFVIDLLKINPEVVKNHIQNL 76 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-----SALKAVGEA 115 +EN + + HN F+ LK NL+I T++ ++ +L A + Sbjct: 77 IENKGI--IGHNLKFDLKFLK--TNLNILPKIVFDTMIASQILAKGDNSQRHSLSASAKR 132 Query: 116 L-KLSSQKMEE-----GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 L K + K+L + + R+ + K T Sbjct: 133 FVSLDVDKTYQKSPWWAKDLSPEQIEYAAKDIDALRHLFKEEKNQLNQDNLHKKASGETF 192 Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 ++F + P+++ E I G +D A L + ++E + + T Sbjct: 193 KVFGVINPVAALEMAFLPALVEIELSGIPIDEEEAKKLLKQKELEFQADYMKFKIKTGAD 252 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETT--CQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 ++ +L + + L + + Q V + + + + R + Sbjct: 253 PF---SPLQVVNYLTNKLKIKLPKTEKGSFSSQDVFLKDYEDIEEVRLLLKLR---ADKK 306 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 ++ + + R+ G + +GA+ TGR S QN+P+ + Sbjct: 307 IIDKIKEILQFTRNKRVYGEFKQIGAA-TGRMSSLRPNLQNIPKNLKY------------ 353 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 EG K +VAD + IE R+ A ++ + AF G+D Sbjct: 354 -------------------LFKPKEGYKFIVADYSQIELRIAAQYTKDENMITAFNEGKD 394 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 L+ T + + ++TK++R + K + L Y K+ + A Sbjct: 395 LHKLTASIITGKSYDEITKEERQLAKAINFGLIYGMSPKSLIEYAKAN------------ 442 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 ++ + + + + + + Sbjct: 443 --------------------------YGVSINLQEAKKFHENYFKFYKSFKDWHDR---- 472 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 ++ ++ + GR L Sbjct: 473 VKEHLDKHRFTTL--------------------ETLLGRKL------------------- 493 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFN 643 +Q D+L ++ +V VHDEI+ E D Sbjct: 494 --IAYKFTDAVNYPIQGSGSDLLKMAVVFFFKERNDLDAKVVNLVHDEILVEVAANDIEK 551 Query: 644 ASMLY-HLMTSNPSWAK-GLPLKAEGYESKRYRK 675 A + M +P+ E S + K Sbjct: 552 AKEVLSSSMEKAGKLILKDVPVAFEMVVSDSWSK 585 >gi|288906293|ref|YP_003431515.1| DNA polymerase I [Streptococcus gallolyticus UCN34] gi|325979307|ref|YP_004289023.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733019|emb|CBI14600.1| DNA polymerase I [Streptococcus gallolyticus UCN34] gi|325179235|emb|CBZ49279.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 878 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 89/661 (13%), Positives = 181/661 (27%), Gaps = 139/661 (21%) Query: 28 VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ F + + D + + K AL ++ Sbjct: 324 FEILGDNYHVENIIGFAWGNDKAIYASTNLDLLKDDLFKAALAKP--IKT-----YDFKR 376 Query: 79 --VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136 VL + +D+P + + + +L + + + E + + KG Sbjct: 377 SKVLLSHLGVDLP-APAFDSRLAKYLL-STVDDNELSTIARLYTDYVLDSDEAV--YGKG 432 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-EIFKRLEPLS--SKEQELWYLDQTIN 193 +H + Y + V ++ + + EQ L + + Sbjct: 433 VKRAVPKKAVLLSHLARKIVVLNYSEK---VMLDKLTEHQQASLLFDMEQPLANVLAKME 489 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL-- 251 G V A + +L QE+ L + ++L LF + L Sbjct: 490 IAGISVKKATLQEMEASNQAVIDELTQEIYDLAGM-EFNINSPKQLGELLFDKMQLPTSY 548 Query: 252 EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 T+ +T VL ++P ++ R ++ + L + + DG++ Sbjct: 549 TKKTKTGYSTAVDVLERLAPISPIVSKILEYRQ-IAKLQSTYIVGLQDFILQDGKIHTRY 607 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 ++TGR S QN+P +R Sbjct: 608 LQD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAF 641 Query: 369 IAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTK 426 + E + L+ +D + IE RVLA ++ ++ + AF G D++ +T R F + VT Sbjct: 642 VPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTP 701 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R K + + Y L + + E + +N+ + Sbjct: 702 NDRRNAKAVNFGIVYGIS-----DYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVV 756 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + + + E R + + + + + G A K + Sbjct: 757 RDAKDKGYVETLFHRRRELPDINSR--NFNIRQF---AERTAINSPIQGSAADILKIAMI 811 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 L D ML Sbjct: 812 NLDKALVDGQFKTKML-------------------------------------------- 827 Query: 607 RDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKA 665 + I+L V P + ++ M S +PL A Sbjct: 828 --------LQVHDE---IILQV--------PKDELEAVKTLVKETMESAID--LSVPLIA 866 Query: 666 E 666 + Sbjct: 867 D 867 >gi|73951787|ref|XP_545922.2| PREDICTED: similar to polymerase (DNA directed) nu [Canis familiaris] Length = 947 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 90/639 (14%), Positives = 179/639 (28%), Gaps = 131/639 (20%) Query: 67 TIVAHNSY-FERTVLKACFNLDIPIHRWI----CTLVLARSNGLPSALKAVGEALKLSSQ 121 ++ N+ F RTVL+ N H + A A Sbjct: 315 PVICFNAKDFVRTVLQIFGNEGSWKHVVHFVGLDPRIAAWLIDPGE------AATSFEDL 368 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 + + I+ + N R ++ + +++ + + Sbjct: 369 VAKFLESSISVKVNSTYGNSSRNVVNQNVRVNLKILYR-LTMGLCSQLKVYGLWQLFCTL 427 Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E L + + V+ + ++ +L+QE + +L+ Sbjct: 428 ELPLIPILAVMESHSIRVNREEMERTSALLGSRLKELEQEAHFVAG-EQFLITSNNQLQE 486 Query: 242 WLFLETGL-------HLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 LF + L L +T + VL++ + L P + R ++ Sbjct: 487 ILFGKLKLHLMSPMETLPRTGLQRLPSTSEAVLNALQDLHPLPKIILEYRR-VHKTKSAF 545 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ L+ + G + G + TGR S Q + + + T + Sbjct: 546 VDGLLAFVRK-GSISSMWNQTG-TVTGRLSARHPNIQGISKHPIKITKPQNFKGTEGTML 603 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET--GEDL 408 T P RS +A E + AD + IE R+LA ++G+ LK F +D+ Sbjct: 604 TISP----------RSMFVAPESHTFLAADFSQIELRILAHLSGDPELLKLFRESGRDDV 653 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + T ++ ++ P VT R K + ++ Y Sbjct: 654 FSTLTSQWKDIPPECVTYADREQTKKVVYSVVYG-------------------------- 687 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 A + +++ QK+ ++ + + Sbjct: 688 ------------------AGKERLAACLGVTVQEAAQFLESFLQKYKKIKDF---VQTTI 726 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 Q + G GR V + Q Sbjct: 727 AQCHQTGYVASI-----------------------MGRRRPLPRVHDQDQ---QLRAQAE 760 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCETPDTDE 641 R+ +VQ + D+ M+ +A +V +HDE++ E D+ Sbjct: 761 RQA------VNFVVQGSAADLCKMAMIRIFRAVATSPTLTARLVAQIHDELLFEVEDSQI 814 Query: 642 FNASMLYH-LMT-----SNPSWAKGLPLKAEGYESKRYR 674 + L M +PLK + Sbjct: 815 PEFAALVRGTMESLQYVRALGLQLQVPLKVSLSAGPSWG 853 >gi|332259946|ref|XP_003279044.1| PREDICTED: DNA polymerase nu-like [Nomascus leucogenys] Length = 1502 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 91/648 (14%), Positives = 184/648 (28%), Gaps = 149/648 (22%) Query: 67 TIVAHNSYFERT-VLKACFNLDIPIHRWIC-----TLVLARSNGLPSALKAVGEALKLSS 120 ++ N+ + +L F D + A Sbjct: 917 PVICFNAK-DFVRILLQFFGNDGSWKHVADFVGLDPRIAAWLIDPS-------------- 961 Query: 121 QKMEEGKELIARFCKGETHE------CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 ++L+ ++C+ RN N L Y + + + ++ Sbjct: 962 DATPSFEDLVEKYCEKSITVKVNSTYGNSSRNIVNQNVRENLKILY-RLTMDLCSKLKDY 1020 Query: 175 LEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 EL + + V+ + ++ +L+QE + Sbjct: 1021 GLWQLFCTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAG-ERFL 1079 Query: 233 SRCLEKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNRM 281 +L+ LF + L L + +T + VL++ + L P + R Sbjct: 1080 IMSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQ 1139 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ L+ A G + T G + TGR S Q + + Sbjct: 1140 -VHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPKN 1196 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +T P R+ ++S+G + AD + IE R+LA ++G+ LK Sbjct: 1197 FKGKEDKILTISP----------RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKL 1246 Query: 402 FET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F+ +D++ T ++ +V QVT R K + A+ Y Sbjct: 1247 FQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVY------------------ 1288 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + +++ QK+ ++ + Sbjct: 1289 --------------------------GAGKERLAACLGIPVQEAAQFLESFLQKYKKIKD 1322 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 A Q + G + GR + ++ Sbjct: 1323 F---ARAAIAQCHQTGYVVSI-----------------------MGRRRPLPRIH---AH 1353 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG---YDIVLTVHDEI 632 Q R+ +VQ + D+ M+ +G +V +HDE+ Sbjct: 1354 DQQLRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASGTLTARLVAQIHDEL 1407 Query: 633 VCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674 + E D A+++ M +PLK + + Sbjct: 1408 LFEVEDPQIPECAALVRRTMESLEQVQALELRLQVPLKVSLSVGRSWG 1455 >gi|218886806|ref|YP_002436127.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757760|gb|ACL08659.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 872 Score = 221 bits (564), Expect = 3e-55, Method: Composition-based stats. Identities = 94/595 (15%), Positives = 160/595 (26%), Gaps = 132/595 (22%) Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 I RW + A G EL Sbjct: 400 GIDPARWFDLGLAAYLLNPEE------RDYGWPRLAARWGDELERSSGNPGL-------- 445 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 A + G + + E L + + G VD+ Sbjct: 446 -----LALEMAGALSGRLAGAQL-----SRLMRTLEMPLIPVLADMEAAGIAVDLDAFAA 495 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRV 262 + V E +L +++ G + R ++L LF GL T+ +T Q V Sbjct: 496 FLREVQGELDRLTRDVYKAAGG-EFNIRSSQQLAELLFGTLGLPTGGKTKGGQTSTAQDV 554 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L P + R + + L L ++ GR+ T L A+ TGR S Sbjct: 555 LEKLSGRHPVVDAILEFR-KLEKLRSTYLEPLPRLVDGAGRIHTTFNQL-ATATGRLSSS 612 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 QN+P +R+C A+ G +LV AD + Sbjct: 613 NPNLQNIPVRGDLGRR-------------------------MRTCFTAAPGLRLVSADYS 647 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 +E RVLA M+ + L AF G D++ T + ++VA QV+ DQR K + L Y Sbjct: 648 QVELRVLAHMSQDPTLLAAFREGADIHSRTASLLYDVAQDQVSTDQRRNAKTINFGLIYG 707 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 G + + L + + + F + E G Sbjct: 708 MGPQKLAQE-----LRIPLTEAKAFIERYFSKLQKLREFYDEAETTARELGYVTTMAGR- 761 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 R+ + +L + N + + I+ L Sbjct: 762 --------RRLLPEIHSENTQLKSQARRQAIN---------------TLIQGSAADIIKL 798 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 + + + Sbjct: 799 ----------------AMLAAHADPELRALNARLI-----------------LQVHDE-- 823 Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMT--SNPSWAKGLPLKAEGYESKRYR 674 ++L E P + A L +M+ A +PL + + + + Sbjct: 824 -LLL--------EVPADNAPAAGERLAAIMSGVRPGGVALDVPLAVDWGQGENWG 869 >gi|319945840|ref|ZP_08020090.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641] gi|319747905|gb|EFW00149.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641] Length = 881 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 94/661 (14%), Positives = 183/661 (27%), Gaps = 138/661 (20%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFNL 86 +I FA+G + + KE LE V ++ VL + + Sbjct: 338 IIGFAWGTKGQ--LYVSTDTGLLQTPIFKEFLE-KTPLKV-----YDFKRAKVLLSHLGI 389 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + + + + + I + + Sbjct: 390 TLQ-NPAFDSRLAKYLL---------STVEDNEISTIASLYSQITLPLDEVVYGKGAKKI 439 Query: 147 KPNHREAWRLFGEYCK--GDVT--VTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVD 200 P D +T ++ + EQ L + + G V+ Sbjct: 440 IPEKAVLLEHLARKVAVLLDTEEPMTEQLKAHDQLDLLYDMEQPLAAVLAKMEIAGIKVE 499 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256 + + +L QE+ L + ++L LF + L L T+ Sbjct: 500 RQTLQDMQVENEAVLERLTQEIYELAG-EEFNINSPKQLGVILFEKLELPLEYTKKTKTG 558 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + P ++ R ++ + L + + DG++ ++ Sbjct: 559 YSTAVDVLERLAPIAPIVSKILEYRQ-IAKIQSTYVIGLQDWILEDGKIHTRYVQD-LTQ 616 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GK 374 TGR S QN+P +R + E Sbjct: 617 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEEVNS 651 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGK 433 L+ +D + IE RVLA ++G++ + AF+ G D++ +T R FN+ P VT + R K Sbjct: 652 VLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEKPEDVTPNDRRNAK 711 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y + L ++ + E + +++ + + Sbjct: 712 AVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKG 766 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + E ++ V + + G A K + L Sbjct: 767 YVETLFKRRRE--IPDINSRNFNVRGF---AERTAINSPIQGSAADILKIAMIHLD---- 817 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 Q Y K+ Sbjct: 818 --------------------------------QALEAGAYKTKM---------------- 829 Query: 614 MMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKR 672 ++ IVL V P + ++ M S A +PL+A+ E K Sbjct: 830 LLQVHDE---IVLQV--------PTDELAAIKALVKETMESAIELA--VPLEADENEGKT 876 Query: 673 Y 673 + Sbjct: 877 W 877 >gi|283853836|ref|ZP_06371055.1| DNA polymerase I [Desulfovibrio sp. FW1012B] gi|283570771|gb|EFC18812.1| DNA polymerase I [Desulfovibrio sp. FW1012B] Length = 878 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 92/488 (18%), Positives = 147/488 (30%), Gaps = 108/488 (22%) Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G +D A V E +L+ + L + R +L L+ GL Sbjct: 491 MERIGIGIDTAALAAFGAEVATELARLEGAIRELAG-EGFNPRSSRQLGEVLYGRMGLKP 549 Query: 252 EDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 T +T Q L P ++ R + + L+ L ++ GR+ T Sbjct: 550 RGKTPGGAASTSQEALERLAGENPLVDRILEFR-KLEKLRSTYLDPLPRLADAAGRIHTT 608 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 A+ TGR S QN+P + +R C Sbjct: 609 FN-NLATATGRLSSSNPNLQNIPIRG-------------------------TLGRRMREC 642 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 +A+ GKKLV AD + IE RVLA ++GE L AFE G D++ T A F+ A A + D Sbjct: 643 FVAAAGKKLVAADYSQIELRVLAHLSGEPALLAAFEQGADIHARTAAILFDKAEADIRPD 702 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 +R K + L Y G + + L + A E F + + + Sbjct: 703 ERRQAKTINFGLLYGMGPQKLSR-----DLGIKLDAAKAFIEKYFERLSGLSTFYQGIVD 757 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 G R+ + ++L + N Sbjct: 758 TAKAQGFVTTLAGR---------RRLLPEIHSANSQLASQARRQAINTVV---------- 798 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + + +L + Sbjct: 799 -----------------------------QGGAADIIKMAMLAAHNDPELA-----GLGA 824 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 M VL VHDE++ ETP+ A L LM + A +PL + Sbjct: 825 -----AM----------VLQVHDELLLETPEAAAQAAGERLSALMCGVVALA--VPLAVD 867 Query: 667 GYESKRYR 674 + + Sbjct: 868 WGAGQTWG 875 >gi|296197013|ref|XP_002806721.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Callithrix jacchus] Length = 965 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 90/644 (13%), Positives = 182/644 (28%), Gaps = 141/644 (21%) Query: 67 TIVAHNSY-FERTVLKACFNLD----IPIHRWICTLVLARSNGLPS---ALKAVGEALKL 118 ++ N+ F R VL+ N + + + A + + + E Sbjct: 378 PVICFNAKDFVRIVLQFFGNNGSWKHVADFVGLDPRIAAWLIDPSDAAPSFEDLVEKY-- 435 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 K K RN N L Y + + + ++ Sbjct: 436 -CDKSITVKVSSTY--------GNSSRNIVNQNVRENLKILY-RLTMDLCSKLKDYGLWQ 485 Query: 179 SSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 EL + + V+ + ++ +L+QE + Sbjct: 486 LFCTLELPLIPILAVMESHTIQVNKEEMEKTSSLLGARLKELEQEAHFVAG-EQFLIMSN 544 Query: 237 EKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 +L+ LF + L L + +T + VL++ + + P + R + Sbjct: 545 NQLREILFGKLKLHLLSPRNCFPRTGLQKYPSTSEAVLNALRDVHPLPKIILEYRQ-VHK 603 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 ++ L+ A G + T G + TGR S Q + + + Sbjct: 604 IKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITKPKNFKGK 661 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET- 404 +T P R+ ++S+G + AD + IE R+LA ++G+ LK F+ Sbjct: 662 EDEILTICP----------RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQES 711 Query: 405 -GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 +D++ T ++ +V VT R K + ++ Y Sbjct: 712 ERDDVFSTLTSQWKDVPVEHVTHADREQTKKVVYSVVY---------------------- 749 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 A + +++ QK+ ++ + Sbjct: 750 ----------------------GAGKERLAACLGVPVQEAAQFLESFLQKYKKIKDF--- 784 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 A Q + G + GR + Sbjct: 785 AQAAIAQCHQTGYMVSI-----------------------MGRRRPLPRIHARDQ---QL 818 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIVCET 636 Q R+ +VQ + D+ M+ +V +HDE++ E Sbjct: 819 QAQAERQA------VNFVVQGSAADLCKLAMIRVFAAVAASHTLTARLVAQIHDELLFEV 872 Query: 637 PDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674 D+ A+++ M +PLK + + Sbjct: 873 EDSQIPECAALVRRTMESLEQVQVLELQLQVPLKVSLSAGRSWG 916 >gi|302561204|ref|ZP_07313546.1| DNA polymerase I [Streptomyces griseoflavus Tu4000] gi|302478822|gb|EFL41915.1| DNA polymerase I [Streptomyces griseoflavus Tu4000] Length = 888 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 90/639 (14%), Positives = 169/639 (26%), Gaps = 120/639 (18%) Query: 44 LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +D + L L + + V HN+ V I T + A Sbjct: 356 WFDPSELDEADERALTAWLADPERPKVFHNAKGAMRVFAEH-GWTIEGVTM-DTALAAYL 413 Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 + L + +E +A + + Sbjct: 414 VKPGR------RSFDLDALSLEYLHRELAPAAAPDGQLAFGADDGAEAEALMVQARAILD 467 Query: 163 GDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + + E L + G D + Q+ + + Sbjct: 468 LGEAFEGRLAEVGAADLLRDMELPTSALLARMERHGIAADREHLQAMEQMFAGAVQQAVK 527 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKLTP-QAIQV 276 E + + ++L+ LF E L T+T L+ T + + Sbjct: 528 EAHAAAGH-EFNLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLATQTDNELPVI 586 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 ++ V + L++ + +DGR+ T A+ TGR S QN+P + Sbjct: 587 MLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEG 644 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGE 395 +R + EG + L+ AD + IE RV+A ++ + Sbjct: 645 RA-------------------------IRRGFVVGEGFESLLTADYSQIELRVMAHLSED 679 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF +GEDL+ T A+ F+V + V + R K M L Y + Sbjct: 680 AGLTEAFTSGEDLHTTAAAQVFSVEQSAVDAEMRRKIKAMSYGLAYG-----LSAFGLSQ 734 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 LN+ ++ E + ++ R + + G +S Sbjct: 735 QLNIEAAEARALMDAYFERFGGVRDYLRRVVDEARATGYTATLFGRRRYLP-----DLNS 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + + G A K + + R+L D+ + Sbjct: 790 DNRQRREAAERMALNAPIQGTAADIVKIAMLNVD----------------RALREADLRS 833 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 ++ DEIV E Sbjct: 834 ------------------------------------RMLLQVH-----------DEIVLE 846 Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + L M++ +PL + Sbjct: 847 LAPGERAAVEELVRREMSTAVE--LRVPLGVSVGAGPDW 883 >gi|260654849|ref|ZP_05860337.1| DNA polymerase I [Jonquetella anthropi E3_33 E1] gi|260630564|gb|EEX48758.1| DNA polymerase I [Jonquetella anthropi E3_33 E1] Length = 848 Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 103/608 (16%), Positives = 166/608 (27%), Gaps = 159/608 (26%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKG 136 LK F L W L + + L ++ Sbjct: 379 LKRLFGLTGLSGSW-DLKTAHYLLHPDLTAHGLPDLADGLPFGPERT------------- 424 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 R P + Y D+ T ++ L + G Sbjct: 425 -------LRLFPLAEDLNEKIESYGMTDLMKTVDL------------PLLPALVRMEQAG 465 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--- 253 +D ++ ++ E+ + G + + +++ LF + GL + Sbjct: 466 VHLDGPAMVAFTAQLEASLDRVSGEILTYAGGPI-NLNSPKQVGELLFEKLGLPVIKRTA 524 Query: 254 -LTETTCQRVLSSNK----KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 +T VL + + P + +R S+ + A S + + Sbjct: 525 QKGYSTDVSVLETLCRSVGDICPVPALLLEHR-ELSKMLSGF--AVPLAAASRDGVVHST 581 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + TGR S QNLP + ++ R C+ Sbjct: 582 FEAQTTGTGRLSSRDPNLQNLP------------------------NYSELGGQLCR-CL 616 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 A G V AD + IE RVLA ++GE+ + FE G D++ T A + VTK+Q Sbjct: 617 TAGPGGVFVAADYSQIELRVLAHLSGERRLREIFEAGRDIHTETAAMILGIPADSVTKEQ 676 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R + K + L Y A L++ Sbjct: 677 RRMAKTVTFGLLYGMSA-----FGLADRLSVGQA-------------------------- 705 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + A+ V E + + G + A Sbjct: 706 -------------EARGIMDAYFAALPGVREY---VDATVAEARRRGYSQTAY------- 742 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR +V + T R VQ + D Sbjct: 743 ----------------GRIRPLDEVA---TGRQTDRGHARRVAINSP------VQGTAAD 777 Query: 609 ILAEGMMNATK----AGYDIVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPL 663 I M+ + AG +VL VHD IVC TP+ E L MT +PL Sbjct: 778 ITKMAMITVDRELAAAGVPMVLQVHDSIVCRTTPENAEPVGKKLAEFMTGAVK--LSVPL 835 Query: 664 KAEGYESK 671 E K Sbjct: 836 AVETKTGK 843 >gi|184200833|ref|YP_001855040.1| DNA polymerase I [Kocuria rhizophila DC2201] gi|183581063|dbj|BAG29534.1| DNA polymerase I [Kocuria rhizophila DC2201] Length = 960 Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 77/515 (14%), Positives = 151/515 (29%), Gaps = 130/515 (25%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G +D L + + + ++ ++ V + ++L Sbjct: 550 ELEMPLAVILARMEATGIAMDRPGIDVLFEDLQHPIDQAFEQAQAQIDHEV-NLGSTKQL 608 Query: 240 KTWLFLETGLHLEDL-------TETTCQRVLSSNKKLTPQAIQV--FNNRMRASRSAVLK 290 + +F E GL + ++ T + + N S+ + Sbjct: 609 QAVMFDELGLPKTKKTKTGYTTDASAVADLIGKVSPDTAGSRFLVALMNWREYSKLKQI- 667 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L +A+ DGR+ T Q A+ TGR S QN+P + Sbjct: 668 VAGLRDAIAEDGRIHTTYQQTVAA-TGRLSSTGPNLQNIPVRTEQG-------------- 712 Query: 351 TSDPDPLQIISDCVRSCVIASEGKK-----LVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +R + E + L+ AD + IE R++A ++G++ ++AF G Sbjct: 713 -----------QRIRDVFVVGEDTQGPFECLMTADYSQIEMRIMAHLSGDEGLIEAFRGG 761 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 EDL+ +R F+VAP VT R+ K M L Y + L+ Sbjct: 762 EDLHRFVGSRVFDVAPEDVTPQMRSKVKAMSYGLVYG-----LSSYGLSQQLH------- 809 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + ++ V + + Sbjct: 810 --------------------------------IGVDEARTMMSGYFERFGGVRDFLRGVV 837 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + GR D+ ++ + Sbjct: 838 EEARS--------------------------KGYTETIDGRRRYLPDLTSDN---RQARQ 868 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDT 639 R +Q + DI+ + M+ +A ++L VHDE++ E Sbjct: 869 AAERMALNAP------IQGSAADIIKKAMIGVDRALRDGQLRSRVLLQVHDELIVEVAPG 922 Query: 640 DEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + + M +PL + + Sbjct: 923 EREEVERILRTEMAGAAE--LTVPLDVNVGTGRTW 955 >gi|77413947|ref|ZP_00790121.1| DNA polymerase I [Streptococcus agalactiae 515] gi|77159983|gb|EAO71120.1| DNA polymerase I [Streptococcus agalactiae 515] Length = 880 Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 102/688 (14%), Positives = 191/688 (27%), Gaps = 150/688 (21%) Query: 9 ETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALEN 63 E S D G + ED L + + D + Q K+AL Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNSDTIY--ATSDVSLLQEALFKKALSK 369 Query: 64 TDVTIVAHNSYFERT---VLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEA 115 ++ VL FN+D+P T + L S + + Sbjct: 370 P--IKT-----YDFKRSKVLLNRFNIDLP-EPAFDTRLAKYLLSTTEDNLVSTIARLYTN 421 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L L + GK + + + + +++ Sbjct: 422 LPLDTDDAVYGKGAKRAIPEKTR----------FLEHLAKKVKVLVDSEANIMQQLKANE 471 Query: 176 EPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + EQ L + + RG V + + L QE+ L + Sbjct: 472 QEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQ-EFNI 530 Query: 234 RCLEKLKTWLFLETGLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 ++L LF GL + T+ +T VL ++P ++ R ++ Sbjct: 531 NSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQ-ITKLQS 589 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + L + + DG++ ++TGR S QN+P Sbjct: 590 TYIIGLQDYILEDGKIHTRYVQD-LTQTGRLSSSDPNLQNIPVRLEQGR----------- 637 Query: 349 SITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R + SE L+ +D + IE RVLA ++ ++ + AF+ G D Sbjct: 638 --------------LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGAD 683 Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 ++ +T R F + P VT + R K + + Y + L + Sbjct: 684 IHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGIS-----DFGLSHNLGIPRKLAKQ 738 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 ++ E + +N+ + + + R ++ + + + Sbjct: 739 YIDTYFERYPGIKNYMETVVREAKDKGYVETLFHR--RRSLPDINSRNFNIRQF---AER 793 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 + G A K + L + ML Sbjct: 794 TAINSPIQGSAADILKIAMINLDRVLYKGGYKSKML------------------------ 829 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646 + IVL V P+ + Sbjct: 830 ----------------------------LQVHDE---IVLEV--------PNEEIGAIKE 850 Query: 647 LY-HLMTSNPSWAKGLPLKAEGYESKRY 673 L M S S +PL A+ + + Sbjct: 851 LVTKTMESAIS--LSVPLIADENAGETW 876 >gi|77408763|ref|ZP_00785493.1| DNA polymerase I [Streptococcus agalactiae COH1] gi|77172608|gb|EAO75747.1| DNA polymerase I [Streptococcus agalactiae COH1] Length = 880 Score = 220 bits (561), Expect = 6e-55, Method: Composition-based stats. Identities = 105/684 (15%), Positives = 191/684 (27%), Gaps = 142/684 (20%) Query: 9 ETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALEN 63 E S D G + ED L + + D + Q K+AL Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNSDTIY--ATSDVSLLQEALFKKALSK 369 Query: 64 TDVTIVAHNSYFERT---VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL--K 117 ++ VL FN+D+P T + L + L Sbjct: 370 P--IKT-----YDFKRSKVLLNRFNIDLP-EPAFDTRLAKYLLSTTEDNLVSTIARLYTN 421 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L + + KG H + +V + ++ E Sbjct: 422 LPLDTDDAV------YGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANVMQQLKANEQEEL 475 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L EQ L + + RG V + + L QE+ L + + Sbjct: 476 LFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQ-EFNINSPK 534 Query: 238 KLKTWLFLETGLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L LF GL + T+ +T VL ++P ++ R ++ + Sbjct: 535 QLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQ-ITKLQSTYII 593 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L + + DG++ ++TGR S QN+P Sbjct: 594 GLQDYILEDGKIHTRYVQD-LTQTGRLSSSDPNLQNIPVRLEQGR--------------- 637 Query: 353 DPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R + SE L+ +D + IE RVLA ++ ++ + AF+ G D++ + Sbjct: 638 ----------LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTS 687 Query: 412 TYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T R F + P VT + R K + + Y + L + ++ Sbjct: 688 TAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGIS-----DFGLSHNLGIPRKLAKQYIDT 742 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 E + +N+ + + + R ++ + + + Sbjct: 743 YFERYPGIKNYMETVVREAKDKGYVETLFHR--RRSLPDINSRNFNIRQF---AERTAIN 797 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + G A K + L + ML Sbjct: 798 SPIQGSAADILKIAMINLDRVLDKGGYKSKML---------------------------- 829 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-H 649 + IVL V P+ + L Sbjct: 830 ------------------------LQVHDE---IVLEV--------PNEEIGAIKELVTK 854 Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673 M S S +PL A+ + + Sbjct: 855 TMESAIS--LSVPLIADENAGETW 876 >gi|319744359|gb|EFV96719.1| DNA-directed DNA polymerase I [Streptococcus agalactiae ATCC 13813] Length = 880 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 102/688 (14%), Positives = 191/688 (27%), Gaps = 150/688 (21%) Query: 9 ETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALEN 63 E S D G + ED L + + D + Q K+AL Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNSDTIY--ATSDVSLLQEALFKKALSK 369 Query: 64 TDVTIVAHNSYFERT---VLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEA 115 ++ VL FN+D+P T + L S + + Sbjct: 370 P--IKT-----YDFKRSKVLLNRFNIDLP-EPAFDTRLAKYLLSTTEDNLVSTIARLYTN 421 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L L + GK + + + + +++ Sbjct: 422 LPLDTDDAVYGKGAKRAIPEKTR----------FLDHLAKKVKVLVDSEANIMQQLKVNE 471 Query: 176 EPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + EQ L + + RG V + + L QE+ L + Sbjct: 472 QEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQ-EFNI 530 Query: 234 RCLEKLKTWLFLETGLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 ++L LF GL + T+ +T VL ++P ++ R ++ Sbjct: 531 NSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQ-ITKLQS 589 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + L + + DG++ ++TGR S QN+P Sbjct: 590 TYIIGLQDYILEDGKIHTRYVQD-LTQTGRLSSSDPNLQNIPVRLEQGR----------- 637 Query: 349 SITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R + SE L+ +D + IE RVLA ++ ++ + AF+ G D Sbjct: 638 --------------LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGAD 683 Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 ++ +T R F + P VT + R K + + Y + L + Sbjct: 684 IHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGIS-----DFGLSHNLGIPRKLAKQ 738 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 ++ E + +N+ + + + R ++ + + + Sbjct: 739 YIDTYFERYPGIKNYMETVVREAKDKGYVETLFHR--RRSLPDINSRNFNIRQF---AER 793 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 + G A K + L + ML Sbjct: 794 TAINSPIQGSAADILKIAMINLDRVLDKGGYKSKML------------------------ 829 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646 + IVL V P+ + Sbjct: 830 ----------------------------LQVHDE---IVLEV--------PNEEIGAIKE 850 Query: 647 LY-HLMTSNPSWAKGLPLKAEGYESKRY 673 L M S S +PL A+ + + Sbjct: 851 LVTKTMESAIS--LSVPLIADENAGETW 876 >gi|262037120|ref|ZP_06010613.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264] gi|261748851|gb|EEY36197.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264] Length = 842 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 82/523 (15%), Positives = 176/523 (33%), Gaps = 59/523 (11%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNLDIPIH 91 F F D + H+ + + E + +++ +N + Sbjct: 365 FGFVICDGERNIVLLNHENTDYGSINKVYEKLKEKSVIGYNIK-------EYLKKGMGYR 417 Query: 92 RWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 ++ ++ G S+ + L ++ +K EE + E + + + Sbjct: 418 QYFDIMLAWYVLGTESSQDLENIIFSELGVNLEKFEEQFKKRKPEEISEEEKTQFLWERA 477 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + + + E +T + E +L + ++ G ++ Sbjct: 478 FYVKELKEILENRLKSEDLT-------NVFENLENKLVPVLASMEMYGIKINKEYFENYK 530 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265 + + KL+ E+ SL + ++L LF + G+ T+ +T VL Sbjct: 531 KELQENIEKLEGEIYSLLG-EAFNIGSPKQLAEILFDKMGIEPVKKTKTGYSTDVEVLEE 589 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + + ++ + L + + R+ T G + TGR S Sbjct: 590 LALRGIEIAEKLLEYRGFTKLLSTYVEPLPKLADEKDRIHTTFNQNG-TSTGRLSSTNPN 648 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P + + +R I+ EG LV D + IE Sbjct: 649 IQNIPVRTDEGIK-------------------------IRKGFISEEGWSLVSFDYSQIE 683 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARS-FNVAPAQVTKDQRAIGKVMELALGYQGG 444 RVLA ++ ++ + A++ +DL+ T + F QVT+++R+I KV+ ++ Y Sbjct: 684 LRVLAELSKDENLVLAYKKDKDLHDLTARKIFFKADEEQVTREERSIAKVINFSILYGKT 743 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 + L + + + E++ + F + EN + + GT Sbjct: 744 P-----FGLSKELKIPVADASLYIKTYFEQYPKVKRFLENILENAKLNGFVETLYGT--R 796 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 R K + L + ++ T+ G A K+ + Sbjct: 797 RYIKGINSSN---KNLQAQANRMAVNTVVQGTAANIIKKVMIK 836 >gi|317124784|ref|YP_004098896.1| DNA polymerase I [Intrasporangium calvum DSM 43043] gi|315588872|gb|ADU48169.1| DNA polymerase I [Intrasporangium calvum DSM 43043] Length = 891 Score = 220 bits (560), Expect = 8e-55, Method: Composition-based stats. Identities = 101/644 (15%), Positives = 186/644 (28%), Gaps = 126/644 (19%) Query: 44 LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 D + + LE+ H++ L + T + A Sbjct: 355 WVDLTALDPAGEAAVGAWLEDASRPKAMHDAKGPIEALA-ARGWILRGLT-SDTQLAAYL 412 Query: 103 NGL---PSALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156 L + +LS+ G+ ++ + L + + Sbjct: 413 VKPDQRTYHLDDLVLRHLRRELSATTDTHGQGMLDFAGDADEKAALKEMVRATAVRDLAA 472 Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 + V T E LS E L ++ + G VDV TL + + T Sbjct: 473 VLD---EQVAAT----GGTELLSDIELPLIHVLAKMERTGIAVDVDGLSTLEETFAAKVT 525 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKK--LTP 271 + Q+ G + ++L+ LF G+ T+T L+ P Sbjct: 526 QAQQDCWDAIGGDQINLGSPKQLQVVLFETLGMPKTKKTKTGYTTDADALAELHAKTEHP 585 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + +R A++ V + L ++++ DGR+ T A+ TGR S QN+P Sbjct: 586 FLEALLRHR-DAAKLRVT-VEGLQKSVSDDGRIHTTYLQTIAA-TGRLSSTEPNLQNVPI 642 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLA 390 + +R + +G L+ AD + IE RV+A Sbjct: 643 RTEEGRR-------------------------IRELFVVGDGYDALMSADYSQIEMRVMA 677 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++G+ ++AF +GEDL+ ++ F VAP VT R+ K M L Y Sbjct: 678 HLSGDSGLIEAFRSGEDLHRFVGSQVFGVAPEDVTAAMRSKVKAMSYGLAYG-----LSA 732 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 + L ++T + + + Sbjct: 733 YGLSKQLAISTEEAKGLMEGYFARFGGVRAYLDEVVAEARGTGFTATMF----------- 781 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 +RR +P + + + +L Sbjct: 782 ------------------------------GRRRYLPDLTSDNRQRR---EMAERMALNA 808 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 G+ + + R T G T ++Q VHD Sbjct: 809 PIQGSAADIMKVAMIGVDRTLTEAGARTRILLQ------------------------VHD 844 Query: 631 EIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 E+V E ++ + + M +PL + + Sbjct: 845 ELVLEVAADEQADVERIVREQMGHAAE--MDVPLDVNIGVGRSW 886 >gi|207092962|ref|ZP_03240749.1| DNA polymerase I (polA) [Helicobacter pylori HPKX_438_AG0C1] Length = 474 Score = 219 bits (559), Expect = 8e-55, Method: Composition-based stats. Identities = 88/592 (14%), Positives = 179/592 (30%), Gaps = 134/592 (22%) Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEGKELI-ARFCKGETHECLYDRNKP 148 R T +LA E + K +ELI K + Sbjct: 3 IRIQDTQILAFLKNP--------EKVGFDEVLKEYLKEELIPHEKIKDFKAKAEKLELLS 54 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 A + EY + + E + + +G+ +D L Sbjct: 55 VELNALKRLCEYFEKGGLEENLLSLAR----EVETPFVKVLMGMEFQGFKIDAPYFKCLE 110 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268 Q E L++++ L + ++L L+ + GL ++ + +T ++ L Sbjct: 111 QEFKNELHVLERQILDLIGVD-FNLNSPKQLSEVLYEKLGLP-KNKSHSTDEKSLLKILD 168 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 P + R ++ L+ + D ++ T G + TGR S QN Sbjct: 169 KHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQN 226 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEAR 387 +P S +R IAS + L+ D + IE R Sbjct: 227 IPVRSPKGL-------------------------LIRKGFIASSKEYCLLGVDYSQIELR 261 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA + ++ ++AF G D+++ T F + K++R+I K + Sbjct: 262 LLAHFSQDKDLMEAFLKGRDIHLETSKALFG---GDLAKEKRSIAKSIN----------- 307 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G+ + + + Sbjct: 308 ---FGLVYGMG------------------------------SKKLSETLNISLNEAKSYI 334 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 +A+ ++ + + N + + +T + GR Sbjct: 335 EAYFKRFPSIKDYLNRMKEEILKTSK--------------------------AFTLLGRY 368 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GY 622 V+ D Y+ Y + I Q + D+L GM+ ++ Sbjct: 369 RVF-DFTGANDYIKGN---------YLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSV 418 Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E + + + ++ + +PL+ + +KR+ Sbjct: 419 RLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YPLRVPLETSAFVAKRW 469 >gi|306834469|ref|ZP_07467582.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338] gi|304423271|gb|EFM26424.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338] Length = 878 Score = 219 bits (559), Expect = 9e-55, Method: Composition-based stats. Identities = 88/667 (13%), Positives = 176/667 (26%), Gaps = 151/667 (22%) Query: 28 VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ F + + D + + K AL ++ Sbjct: 324 FEILGDNYHVENIIGFAWGNDKAIYASTNLDLLKDDLFKAALAKP--IKT-----YDFKR 376 Query: 79 --VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136 VL + F +D+P + + + ++ L + Sbjct: 377 SKVLLSHFGVDLP-APAFDSRLAKYLLS------------TVDDNELSTIARLYTDYVLD 423 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-------EIFKRLEPLS--SKEQELWY 187 K E L + V + ++ + + EQ L Sbjct: 424 SDEAVYGKGVKRAVPEKSVLLSYLARKIVVLNHSEKVMLDKLTEHQQASLLFDMEQPLAN 483 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + G V A + +L QE+ L + ++L LF + Sbjct: 484 VLAKMEIAGISVKKATLQEMEASNQAVIDELTQEIYDLAGM-EFNINSPKQLGELLFDKM 542 Query: 248 GLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 L T+ +T VL ++P ++ R ++ + L + + DG Sbjct: 543 QLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQ-IAKLQSTYIVGLQDFILQDG 601 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 ++ ++TGR S QN+P Sbjct: 602 KIHTRYLQD-LTQTGRLSSVDPNLQNIPVRLEQGR------------------------- 635 Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R + E + L+ +D + IE RVLA ++ ++ + AF G D++ +T R F + Sbjct: 636 LIRKAFVPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEK 695 Query: 422 -AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 VT + R K + + Y L + + E + +N Sbjct: 696 TEDVTPNDRRNAKAVNFGIVYGIS-----DYGLANNLGIPRKVAKQYIETYFERYPGIKN 750 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + + + + + E R + + + + + G A Sbjct: 751 YMERVVRDAKDKGYVETLFHRRRELPDINSR--NFNIRQF---AERTAINSPIQGSAADI 805 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 K + L D ML Sbjct: 806 LKIAMINLDKALVDGQFKTKML-------------------------------------- 827 Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAK 659 + I+L V P + ++ M S Sbjct: 828 --------------LQVHDE---IILQV--------PKDELEAVKTLVKETMESAID--L 860 Query: 660 GLPLKAE 666 +PL A+ Sbjct: 861 SVPLIAD 867 >gi|118197653|ref|YP_874046.1| DNA polymerase [Thermus phage phiYS40] gi|116266344|gb|ABJ91427.1| DNA polymerase [Thermus phage phiYS40] Length = 703 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 102/732 (13%), Positives = 211/732 (28%), Gaps = 147/732 (20%) Query: 2 ATLFIDFETRSPIDLTKCG-ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 + ID ET D K G + Y+ + L +D + + L+ + + Sbjct: 10 KIVGIDIETW---DGKKGGSLDPYS--GKIALVQIAYDRNNIVLY--RPWEKNFEEALKV 62 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS----NGLPSALKAVGEAL 116 L + DV V HN F+ + +I T++ ++ P + E L Sbjct: 63 LSDKDVLKVGHNLKFDLKFF---YMNNIYPEPIFDTMIASQMIYAGLDEP---DEISEVL 116 Query: 117 K-LSSQKMEEGKELIARFCKGETHE-------------------CLYDRNKPNHREAWRL 156 + L E + F K T +N E Sbjct: 117 EALKDDLTTEEVAIFDVFGKKRTKATKFSHSLQAVLKRELNIFLPKDVQNSNWGGELSEA 176 Query: 157 FGEYCKGDV----TVTREIFKRLEPLS-----SKEQELWYLDQTINDRGYCVDVALAHT- 206 EY DV ++ E++K+++ L+ E + + + G +D Sbjct: 177 QKEYAINDVKYLKDLSIELWKKIKALNIENVFMLEMKFLPVLVMLELTGVKIDKEGWKKK 236 Query: 207 -------------------LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + V + K+ L + ++ Sbjct: 237 MEKENQELLELEKELKKEIYEKFVSKQSEKMMVGLFEDAEYEKINLNSPLQMAKI----F 292 Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 GL + T +++ P + + + ++ +E + + RL Sbjct: 293 GLPNVS--KLTLEKI------EDPTIKKYVEYKKK-AKLVTTYSKEYLEKLTENNRLMSD 343 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 + TGR S QN+P + Sbjct: 344 YSQ-TKTATGRISSSNPNLQNVP-------------------------------SWFKRY 371 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV-TK 426 + A EG V AD + +E R+LA+++G++ + + + +D++ + + + P Q Sbjct: 372 ITAEEGYVPVFADYSQVELRILAYLSGDEAMIDSCNS-KDMHSENARKIYKIPPDQPVPP 430 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R K + A+ Y A G+ + + + F Sbjct: 431 ELRKKAKTVSFAIPYGSSAYGLV----VRGMFSSLAEAEEAIEGFFNSFPKVKEFLEKSA 486 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 ++ I + +++ + +E + + + K + Sbjct: 487 KSAQ------NGITRDALGRVRNYKKIY------ISEDEKGALKILMFRLPSGISKDEFI 534 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 V K + + D + ++ + + + +QA S Sbjct: 535 KEVLEKNSFKDAA-------KIFGMDEQMLQLAISAYEKTKKLAKI-AREGQNHPIQATS 586 Query: 607 RDILAEGMMNATKAGY-----DIVLTVHDEIVCETPDTDE-FNASMLYHLMTSN-PSWAK 659 I M++ + + LTVHD I E + +M P Sbjct: 587 ASITKTAMVDLLEYLSMTGYGYMTLTVHDSIFFEIKKEFIFDALPKIKEIMEQAGPKVVP 646 Query: 660 GL--PLKAEGYE 669 G+ P+ E E Sbjct: 647 GIITPVDVEVGE 658 >gi|116628454|ref|YP_821073.1| DNA polymerase I [Streptococcus thermophilus LMD-9] gi|116101731|gb|ABJ66877.1| DNA polymerase I [Streptococcus thermophilus LMD-9] gi|312279074|gb|ADQ63731.1| DNA polymerase I [Streptococcus thermophilus ND03] Length = 879 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 96/663 (14%), Positives = 186/663 (28%), Gaps = 143/663 (21%) Query: 28 VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ F + + D + + + AL + V N ++ Sbjct: 325 FEILGDNYHTEPIIGFAWGNEKQIYASTDTDLLKSEAFQAAL-SKAV-----NI-YDFKR 377 Query: 79 --VLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIA 131 VL + +D+P + S + + L L + ++ GK Sbjct: 378 SKVLLSHLGIDLPTAN-FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVVYGKGAKR 436 Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191 + E + + A + E + E L E L + Sbjct: 437 AIPEKEVLLSHLAKKVKVLQVAKPVMLEKLAE--------HGQSELLFDMELPLANVLAK 488 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G VD + + KL Q++ + + ++L LF + GL L Sbjct: 489 MEMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAG-EEFNINSPKQLGVILFEKMGLPL 547 Query: 252 --EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T+ +T VL + P ++ R ++ + L + + DG++ Sbjct: 548 EYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQ-ITKLQSTYVLGLQDYILEDGKIHT 606 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 ++TGR S QN+P +R Sbjct: 607 RYMQD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRK 640 Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424 + S + L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P V Sbjct: 641 AFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDV 700 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T + R K + + Y + L ++ ++ E + + + Sbjct: 701 TPNDRRNAKAVNFGIVYGIS-----DFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDN 755 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + E R + V + + G A K Sbjct: 756 VVREAKDKGYVSTLFHRRRELPDINSR--NFNVRNF---AERTAINSPIQGSAADILKIA 810 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 + L + ML Sbjct: 811 MINLDKALVEGGYKTKML------------------------------------------ 828 Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPL 663 + IVL V P + ++ M S A +PL Sbjct: 829 ----------LQVHDE---IVLEV--------PSDELLAMKALVKETMESAVELA--VPL 865 Query: 664 KAE 666 A+ Sbjct: 866 IAD 868 >gi|295111897|emb|CBL28647.1| DNA polymerase I [Synergistetes bacterium SGP1] Length = 850 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 81/524 (15%), Positives = 153/524 (29%), Gaps = 124/524 (23%) Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 LF D +T + + + L + + G +D + L + + Sbjct: 427 ALFRLRQGLDAAMT-RHQGLRDVMEGIDLPLIPVLLRMERWGVRLDPSRFAALQEELAAR 485 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKK- 268 ++ ++E + V + +++ LF++ G E T+ +T VL + Sbjct: 486 IRAIEAQVEDMAGTAV-NLNSPKQVADLLFVQLGFAPEGKTKGKTGFSTGAAVLEHLARL 544 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + + S+ + L +A + T + TGR S QN Sbjct: 545 PGGEVPALLLEHRELSKMQSGFVVPLQKAAEEGEGVIHTTFEPALTGTGRLSSRDPNLQN 604 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEAR 387 +P ++ ++ ++ EG V AD + IE R Sbjct: 605 IP-------------------------AFGQWAERIKQGLVPVREGNVFVAADYSQIELR 639 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA M+ E ++AF G D++ T + F++AP VT + R + Sbjct: 640 VLAHMSREPRLVEAFRNGRDIHRETASWVFSMAPEFVTPELRRVA--------------K 685 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G++ A + + Sbjct: 686 MINFGLLYGMSAFGLAERLDM------------------------------PRGEASMIV 715 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 K + + V ++ + +GR Sbjct: 716 KRYFEALPGVQSFLKDIVKEAHAA--------------------------GFARTLAGRI 749 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GY 622 +V L R L +Q + DI + M++ +A Sbjct: 750 RPVDEVTA------QGRGGLDRV------LVNTPIQGTAADIARKAMVDFDRAFRHDGEV 797 Query: 623 DIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKA 665 + L VHD +VCE P L +M + + LPL+ Sbjct: 798 RLFLQVHDSLVCECPAARAEEVGHSLREIMMNAAT--LSLPLEV 839 >gi|112420958|ref|NP_861524.2| DNA polymerase nu [Homo sapiens] gi|90101282|sp|Q7Z5Q5|DPOLN_HUMAN RecName: Full=DNA polymerase nu gi|66268799|gb|AAY43130.1| polymerase (DNA directed) nu [Homo sapiens] gi|119602945|gb|EAW82539.1| polymerase (DNA directed) nu, isoform CRA_b [Homo sapiens] gi|123241603|emb|CAM16854.1| polymerase (DNA directed) nu [Homo sapiens] gi|123257784|emb|CAM20461.1| polymerase (DNA directed) nu [Homo sapiens] gi|148922010|gb|AAI46298.1| Polymerase (DNA directed) nu [synthetic construct] gi|162319058|gb|AAI56717.1| Polymerase (DNA directed) nu [synthetic construct] gi|162319324|gb|AAI56872.1| Polymerase (DNA directed) nu [synthetic construct] gi|261858178|dbj|BAI45611.1| polymerase (DNA directed) nu [synthetic construct] Length = 900 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 94/649 (14%), Positives = 190/649 (29%), Gaps = 151/649 (23%) Query: 67 TIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPS---ALKAVGEALK 117 ++ N+ F R VL F D + A + + + E Sbjct: 315 PVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEKY- 372 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 +K K R E + +T ++ +L+ Sbjct: 373 --CEKSITVKVNSTYGNSSRNIVNQNVR------ENLKTLYR-------LTMDLCSKLKD 417 Query: 178 LSSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + L + + V+ + ++ +L+QE + Sbjct: 418 YGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAG-ERF 476 Query: 232 SSRCLEKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 +L+ LF + L L + +T + VL++ + L P + R Sbjct: 477 LITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYR 536 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L+ A G + T G + TGR S Q + + Sbjct: 537 Q-VHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPK 593 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +T P R+ ++S+G + AD + IE R+L ++G+ LK Sbjct: 594 NFKGKEDKILTISP----------RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLK 643 Query: 401 AFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 F+ +D++ T ++ +V QVT R K + A+ Y GA + +A+ G+ Sbjct: 644 LFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVY--GAGKER-LAACLGVP 700 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + +++ QK+ ++ Sbjct: 701 IQ-----------------------------------------EAAQFLESFLQKYKKIK 719 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + A Q + G + GR + + Sbjct: 720 DF---ARAAIAQCHQTGCVVSI-----------------------MGRRRPLPRIH---A 750 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDE 631 + Q R+ +VQ + D+ M++ +V +HDE Sbjct: 751 HDQQLRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDE 804 Query: 632 IVCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674 ++ E D A+++ M +PLK + + Sbjct: 805 LLFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSWG 853 >gi|32306441|gb|AAN52116.1| DNA polymerase N [Homo sapiens] Length = 900 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 94/649 (14%), Positives = 190/649 (29%), Gaps = 151/649 (23%) Query: 67 TIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPS---ALKAVGEALK 117 ++ N+ F R VL F D + A + + + E Sbjct: 315 PVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEKY- 372 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 +K K R E + +T ++ +L+ Sbjct: 373 --CEKSITVKVNSTYGNSSRNIVNQNVR------ENLKTLYR-------LTMDLCSKLKD 417 Query: 178 LSSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + L + + V+ + ++ +L+QE + Sbjct: 418 YGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAG-ERF 476 Query: 232 SSRCLEKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 +L+ LF + L L + +T + VL++ + L P + R Sbjct: 477 LITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYR 536 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L+ A G + T G + TGR S Q + + Sbjct: 537 Q-VHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPK 593 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +T P R+ ++S+G + AD + IE R+L ++G+ LK Sbjct: 594 NFKGKEDKILTISP----------RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLK 643 Query: 401 AFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 F+ +D++ T ++ +V QVT R K + A+ Y GA + +A+ G+ Sbjct: 644 LFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVY--GAGKER-LAACLGVP 700 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + +++ QK+ ++ Sbjct: 701 IQ-----------------------------------------EAAQFLESFLQKYKKIK 719 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + A Q + G + GR + + Sbjct: 720 DF---ARAAIAQCHQTGCVVSI-----------------------MGRRRPLPRIH---A 750 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDE 631 + Q R+ +VQ + D+ M++ +V +HDE Sbjct: 751 HDQQLRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDE 804 Query: 632 IVCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674 ++ E D A+++ M +PLK + + Sbjct: 805 LLFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSWG 853 >gi|306832348|ref|ZP_07465502.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425787|gb|EFM28905.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 878 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 89/665 (13%), Positives = 179/665 (26%), Gaps = 147/665 (22%) Query: 28 VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ F + + D + + K AL ++ Sbjct: 324 FEILGDNYHVENIIGFAWGNDKAIYASTNLDLLKDDLFKAALAKP--IKT-----YDFKR 376 Query: 79 --VLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIA 131 VL + +D+P + + S + + L S + GK + Sbjct: 377 SKVLLSHLGVDLP-APAFDSRLAKYLLSTVDDNELSTIARLYTDYVLDSDEAVYGKGVKR 435 Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLD 189 K R + ++ + ++ + + EQ L + Sbjct: 436 AVPKKAVLLSHLARKIVVLNHSEKVMLD----------KLTEHQQASLLFDMEQPLANVL 485 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G V A + +L QE+ L + ++L LF + L Sbjct: 486 AKMEIAGISVKKATLQEMEASNQAVIDELTQEIYDLAGM-EFNINSPKQLGELLFDKMQL 544 Query: 250 HL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 T+ +T VL ++P ++ R ++ + L + + DG++ Sbjct: 545 PTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQ-IAKLQSTYIVGLQDFILQDGKI 603 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 ++TGR S QN+P + Sbjct: 604 HTRYLQD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LI 637 Query: 365 RSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-A 422 R + E + L+ +D + IE RVLA ++ ++ + AF G D++ +T R F + Sbjct: 638 RKAFVPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTE 697 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 VT + R K + + Y L + + E + +N+ Sbjct: 698 DVTPNDRRNAKAVNFGIVYGIS-----DYGLANNLGIPRKVAKQYIETYFERYPGIKNYM 752 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + + + + E R + + + + + G A K Sbjct: 753 ERVVRDAKDKGYVETLFHRRRELPDINSR--NFNIRQF---AERTAINSPIQGSAADILK 807 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 + L D ML Sbjct: 808 IAMINLDKALVDGQFKTKML---------------------------------------- 827 Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGL 661 + I+L V P + ++ M S + Sbjct: 828 ------------LQVHDE---IILQV--------PKNELEAVKTLVKETMESAID--LSV 862 Query: 662 PLKAE 666 PL A+ Sbjct: 863 PLIAD 867 >gi|220912558|ref|YP_002487867.1| DNA polymerase I [Arthrobacter chlorophenolicus A6] gi|219859436|gb|ACL39778.1| DNA polymerase I [Arthrobacter chlorophenolicus A6] Length = 894 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 92/649 (14%), Positives = 182/649 (28%), Gaps = 134/649 (20%) Query: 42 VELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 D + L L + + V H L L++ T + Sbjct: 358 AVYLDLTALDADTENALATWLRDPESPKVLHGFKAALKALT-ARGLELE-GVVDDTSISG 415 Query: 101 RSNGL---PSALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 L + + + + + G+ ++ + Sbjct: 416 YLIQPDRRTYELAELAQHHLNVGMPAATAKAGQLELSFDGNDTAAAEALVQAAAVVSALS 475 Query: 155 RLF----GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 R F E ++ T E+ + + + G +D+ Sbjct: 476 RFFETELKERRAEELLSTLEL------------PVSRVLADMELAGIGIDLDRMDEQLAD 523 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN- 266 + + ++ + V + ++L+T LF E L ++ T L + Sbjct: 524 LARVIDQAQEQAFAAIGHEV-NLGSPKQLQTVLFEELQLPKTKKIKSGYTTDAASLKNLL 582 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 +K + + A++ + +L +++ DGR+ T A+ TGR S Sbjct: 583 EKTGHEFLVQLMAHREAAKLR-QMIESLKKSVAEDGRIHTTYAQNVAA-TGRISSNNPNL 640 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIE 385 QN+P S VR + S+G + L+ AD + IE Sbjct: 641 QNIPIRSEEGRR-------------------------VRGIFVVSDGYECLLSADYSQIE 675 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R++A ++G+ ++A++ GEDL+ + F+V QVT R+ K M L Y Sbjct: 676 MRIMAHLSGDAGLIQAYKDGEDLHRFVGSNIFHVPTDQVTSAMRSKVKAMSYGLAYG--- 732 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + L ++ + + ++ R + + Sbjct: 733 --LTSFGLSKQLEISVDEARTLMKDYFDRFGAVRDYLRGVVDQARVDGYTSTI------- 783 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 +RR +P + + Sbjct: 784 ----------------------------------EGRRRYLPDLTSTDRQ---------- 799 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 + N + + R G E Q L M+ Sbjct: 800 LRENAERIALNSPIQGSAADIIKRAML--GVHAELQAQG-----LKSRML---------- 842 Query: 626 LTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 L VHDE+V E + L M + +PL+ + + Sbjct: 843 LQVHDELVLEVAPGERAAVEALVTEQMAAAAD--LSVPLEVQIGVGPSW 889 >gi|297282109|ref|XP_002802209.1| PREDICTED: DNA polymerase nu-like [Macaca mulatta] Length = 1484 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 91/645 (14%), Positives = 182/645 (28%), Gaps = 143/645 (22%) Query: 67 TIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPS---ALKAVGEALK 117 ++ N+ F R VL F D + A + + + E Sbjct: 917 PVICFNAKDFVRIVL-QFFGNDGSWKHVADFVGLDPRIAAWLIDPSDAVPSFEDLVEKY- 974 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 +K K R+ L Y + + + ++ + Sbjct: 975 --CEKSITVKVNSTYENSSRNIVNQNVRD--------NLKILY-RLTMDLCSKLKEYGLW 1023 Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 E+ + + V+ ++ ++ KL+QE + Sbjct: 1024 QLFCTLEVPLIPILAVMESHAIQVNKEEMEKISALLGARLKKLEQEAHFVAG-ERFLIMS 1082 Query: 236 LEKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 +L+ LF + L L + +T + VL++ + L P + R Sbjct: 1083 SNQLREILFGKLKLHLLSRRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQ-VH 1141 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + ++ L+ A G + T G + TGR S Q + + + Sbjct: 1142 KIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITKPKNFKG 1199 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +T P R+ ++S+G + AD + IE R+LA ++G+ LK F+ Sbjct: 1200 KEDEILTISP----------RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQE 1249 Query: 405 --GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 +D++ T ++ +V VT R K + A+ Y Sbjct: 1250 SERDDVFSTLTSQWKDVPMEHVTHADREQTKRVVYAVVY--------------------- 1288 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + +++ QK+ ++ + Sbjct: 1289 -----------------------GAGKERLAACLGVPVQEAAQFLESFLQKYKKIKDF-- 1323 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 A Q G + GR + ++ Sbjct: 1324 -ARAAIAQCHRTGYVVSI-----------------------MGRRRPLPRIH---AHDQQ 1356 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIVCE 635 Q R+ +VQ + D+ M+ +V +HDE++ E Sbjct: 1357 LRAQAERQA------VNFVVQGSAADLCKLAMIRVFTAVATSRTLTARLVAQIHDELLFE 1410 Query: 636 TPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674 D A+++ M +PLK + + Sbjct: 1411 VEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSWG 1455 >gi|322388444|ref|ZP_08062047.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779] gi|321140757|gb|EFX36259.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779] Length = 889 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 100/666 (15%), Positives = 190/666 (28%), Gaps = 146/666 (21%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKAC 83 +I FA+ D + Q LKE LE V ++ VL Sbjct: 345 DLIGFAWSCGDK----LYATDKLELLQDPILKEFLE-KTPLKV-----YDFKKAKVLLNR 394 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALK--AVGEALKLSSQKMEEGKELIARFCKGETHEC 141 F LD+ + + + + + +E + KG Sbjct: 395 FGLDLQ-APAFDSRLAKYLLSTVENNEISTIANLYGQTYLVDDE-----TFYGKGVKKAI 448 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDR 195 H V + ++L EQ L + + Sbjct: 449 PERETFLEHLVRKVAVL------VETEPVLLEKLSENGQLDLLYDMEQPLALVLAKMEIA 502 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--ED 253 G V + ++ KL QE+ L + ++L LF + GL + Sbjct: 503 GIKVKKETLLEMQAENELVIEKLTQEIYELAG-EEFNINSPKQLGELLFEKLGLPIEYTK 561 Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+ +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 562 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQ 620 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 ++TGR S QN+P +R + Sbjct: 621 D-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVP 654 Query: 371 S-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQ 428 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + Sbjct: 655 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPND 714 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + + Y + L ++ ++ E + +N+ + Sbjct: 715 RRNAKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 769 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + + E R + + + + G A K + Sbjct: 770 ARDKGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMI-- 822 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 L L +GR ++ + Sbjct: 823 --------QLDKALVAGRY---------QTKM---------------------------- 837 Query: 609 ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEG 667 ++ IVL E P ++ + L M +PL A+ Sbjct: 838 -----LLQVHDE---IVL--------EVPKSELASIKKLVKQTMEEAIQ--LSVPLIADE 879 Query: 668 YESKRY 673 E + Sbjct: 880 NEGVTW 885 >gi|313895447|ref|ZP_07829004.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312976342|gb|EFR41800.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 893 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 99/686 (14%), Positives = 189/686 (27%), Gaps = 149/686 (21%) Query: 11 RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVA 70 RS + G+ + + L A V +VL L ++ +V Sbjct: 330 RSAERIAVAGVFEGTAPF-LNLVALALSYGDVRGVLHASSAHFAEVL-SIL--SERPVVL 385 Query: 71 HNSYFERTVLKACFNLDIPIH-RWICTLVLARSNGLP---SALKAVGEAL--KLSSQKME 124 ++ + + + +L A +LS+ + Sbjct: 386 WDAK-------RYAQAGVTLGTEVFDFALADYLLRPEERQRSLDRAASAYLDELSAPQTA 438 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC-----KGDVTVTREIFKRLEPLS 179 E + L A + L++ + Y D +T +++ Sbjct: 439 EDRTLSAAYAHLANGAPLHNEQTAFYEVILA-ARLYAPTSAALADAKLT-KLYG------ 490 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G V+ A + +++Q++ +L + ++L Sbjct: 491 EIELPLVPILAAMERTGVAVNRAALVRALAAANERIAEIEQDIYALAGT-EFNISSPKQL 549 Query: 240 KTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 LF GL + + +T VL + P +V R S+ L + Sbjct: 550 GEVLFDRLGLTSPKMKKTKTGYSTNAEVLEEMRAAHPVVDRVLTYR-MWSKIRSTYLEGI 608 Query: 295 VEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 + D GR+ + + TGR S QN+P + Sbjct: 609 GALIRPDTGRVHTSFNQ-TVTATGRLSSSDPNLQNIPVRTEEGRA--------------- 652 Query: 354 PDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 VR+ EG L+ AD + IE R+LA M+G++ + AF G+D++ T Sbjct: 653 ----------VRALFEPGEGYDALLSADYSQIELRILAHMSGDETLIDAFLQGQDIHART 702 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 + F V A+VT QR K + + Y + L + Sbjct: 703 ASEVFGVPLAEVTSAQRRSAKAVNFGIVYG-----LSDYGLSQDLGIPRKEAAGYIERYF 757 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV--SELWNE--LHQAF 528 E + F + + + G R+ + + Sbjct: 758 ERYHGVRAFLDRVVADAHTNGFVTTLYGR---------RRALPAINSRNFMQRSNAERMA 808 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 T G A K + + +L Sbjct: 809 MNTPIQGTAADLIKIAMIRADAALRAAGVKSRIL-------------------------- 842 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SML 647 + +VL E+V + + +L Sbjct: 843 --------------------------LQVHDE---LVL----EVV----NDEIAQVTELL 865 Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRY 673 M+ A +PL + + K + Sbjct: 866 TAAMSGAAQLA--VPLAVDVHTGKNW 889 >gi|291412349|ref|XP_002722448.1| PREDICTED: DNA-directed DNA polymerase nu [Oryctolagus cuniculus] Length = 858 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 100/641 (15%), Positives = 186/641 (29%), Gaps = 132/641 (20%) Query: 65 DVTIVAHNSY-FERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 + +V N+ F RTVL+ + D + + + A + ++ Sbjct: 302 KLPVVCFNAKDFVRTVLQFLGDADSWKHVADFVGLDPRIAAWLIDPRD--ATLSFEHLVA 359 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC-KGDVTVTREIFKRLEPL 178 + ++ + + N R RL C K ++F LE Sbjct: 360 KYLEKSTTVKVSSTYGNASRNIVNQNVHMNLRILHRLMMTLCSKLKAYSLWQLFWTLE-- 417 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 L + + V+ + ++ +L+QE + + Sbjct: 418 ----LPLIPILAVMERHSVQVNKEEMERTSALLGARLKELEQEAHFVAG-ERFLITSNNQ 472 Query: 239 LKTWLFLETGL------HLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 L+ LF + L L +T + VL++ + L P + R + Sbjct: 473 LREILFDKLKLHLLSQRRLPKTGLQKYPSTSEAVLNALQDLHPLPKIILEYRQ-VHKIKS 531 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 ++ L+ A +G + T G + TGR S Q + R + Sbjct: 532 TFVDGLL-ACMREGSISSTWNQTG-TVTGRLSAKHPNIQGISRHPIHITKPQNTKGKEDE 589 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET--GE 406 +T P R+ ++S G + AD + IE R+LA ++G+ LK F E Sbjct: 590 ILTISP----------RAMFVSSAGHTFLAADFSQIELRILAHLSGDAELLKLFHESERE 639 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T ++ N+ VT R K + ++ Y Sbjct: 640 DVFSTLTSQWKNMPVEHVTHVDREQTKKVVYSVVYG------------------------ 675 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 A R + + QK+ ++S+ Sbjct: 676 --------------------AGKERLAACLGVAVPEAARFLETFLQKYKKISDF---AQA 712 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 A Q + G +GR + +L Q Sbjct: 713 AIAQCHQRGYVTSV-----------------------TGRRRPLPRICAQEPHLR---AQ 746 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCETPDT 639 R+ +VQ + D+ M+ A +V +HDE++ E D Sbjct: 747 AERQA------VNFVVQGSAADLCKMAMIRIFAAVSSSPTLTARLVAQIHDELLFEVEDA 800 Query: 640 DEFNASMLYH-LMTS-----NPSWAKGLPLKAEGYESKRYR 674 + L M S +PLK + + Sbjct: 801 QIPEFAALVRGTMESLQQVPALELQLQVPLKVSLSVGRSWG 841 >gi|296875409|ref|ZP_06899483.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 15912] gi|296433602|gb|EFH19375.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 15912] Length = 881 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 98/661 (14%), Positives = 184/661 (27%), Gaps = 138/661 (20%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFNL 86 +I FA+G + + KE LE V ++ VL + + Sbjct: 338 IIGFAWGTKGQ--LYASTDTGLLQTPIFKEFLE-KTPLKV-----YDFKRAKVLLSHLGI 389 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + + + + + IA + R Sbjct: 390 TLQ-NPAFDSRLAKYLL---------STVEDNEISTIASLYSQIALPLDEVVYGKGVKRA 439 Query: 147 KPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 P + + +L+ L EQ L + + G V+ Sbjct: 440 IPERAVLLEHLALKVAVLLDTEEPMVEQLQAHDQLDLLYDMEQPLAAVLAKMEIAGIKVE 499 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256 + +V +L QE+ L + ++L LF + L L T+ Sbjct: 500 RQTLEDMQVENEVVLERLTQEIYELAG-EEFNINSPKQLGVILFEKLELPLEYTKKTKTG 558 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + P ++ R ++ + L + + DG++ ++ Sbjct: 559 YSTAVDVLERLAPIAPIVSKILEYRQ-IAKIQSTYVIGLQDWILEDGKIHTRYVQD-LTQ 616 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK- 374 TGR S QN+P +R + E Sbjct: 617 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEEENS 651 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGK 433 L+ +D + IE RVLA ++G++ + AF+ G D++ +T R FN+ P VT + R K Sbjct: 652 VLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPEDVTPNDRRNAK 711 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y + L ++ + E + +++ + + Sbjct: 712 AVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKG 766 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + E ++ V + + G A K + L Sbjct: 767 YVETLFKRRRE--IPDINSRNFNVRGF---AERTAINSPIQGSAADILKIAMIHLD---- 817 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 Q Y K+ Sbjct: 818 --------------------------------QALEAGAYKTKM---------------- 829 Query: 614 MMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672 ++ IVL V P + L M S A +PL+A+ E K Sbjct: 830 LLQVHDE---IVLQV--------PSDELAAIKELVKETMESAIELA--VPLEADENEGKT 876 Query: 673 Y 673 + Sbjct: 877 W 877 >gi|12001920|gb|AAG43103.1|AF038543_1 DNA polymerase I [Rhodococcus sp. ATCC 15963] Length = 915 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 101/664 (15%), Positives = 184/664 (27%), Gaps = 134/664 (20%) Query: 28 VCVILFAFGFDDHPVELWDC-VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 V A D P L + L + H + + L Sbjct: 363 GDVTALAIAASDGECAYIAASTATPEDEAALGDWLADASQPKALHEAKWAIHAL-RGRGW 421 Query: 87 DIPIHRWICTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECL 142 + T + A L + LK + G+E ++ E Sbjct: 422 TL-GGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELRAETSGQEQLSLLDDTE----- 475 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR--EIFKRLEPLSSKEQELWYL--DQTINDRGYC 198 + D+ E+ + EL I G Sbjct: 476 ---QLDAEAAETAMLSAQAVLDLAAALGTELESIESKSLLSDMELPLTIELAQIEATGIV 532 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256 VD A H L + + + + ++L+ LF E + T+ Sbjct: 533 VDSAHLHDLQSRFASQVADAANSAYEVIDKQI-NLGSPKQLQVVLFEELDMPKTKKTKTG 591 Query: 257 -TTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T L P + +R A+R V ++ L++A+ DGR+ T A Sbjct: 592 YSTDAEALQGLFDKTGHPFLEHLLAHR-DATRMKVT-VDGLLKAVAEDGRIHTTFNQTVA 649 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGR S QN+P + + E +R + +G Sbjct: 650 A-TGRLSSTDPNLQNIPVRNDAGRE-------------------------IRDGFVVGQG 683 Query: 374 K-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 L+ AD + IE R++A ++G++ ++AF TGEDL+ +R+F V +VT + R Sbjct: 684 FDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELRRRV 743 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K M L Y + L ++T + ++ + ++ + E + Sbjct: 744 KAMSYGLAYG-----LSAYGLASQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKD 798 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 +RR +P + Sbjct: 799 GYTSTLY-----------------------------------------GRRRYLPDLNSD 817 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD-ILA 611 + R V N T + K D L Sbjct: 818 NRQ----------RREVAERAALNAPIQGTAADIIKVAMINVQKAL--------ADAGLK 859 Query: 612 EGM-MNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYE 669 M + +VL E ++ +++ M + +PL Sbjct: 860 SRMLLQVHDE---LVL--------EVVASELEEVTALVKDKMATAIE--LSVPLDVSVGT 906 Query: 670 SKRY 673 + + Sbjct: 907 GRSW 910 >gi|195952917|ref|YP_002121207.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1] gi|195932529|gb|ACG57229.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1] Length = 585 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 109/717 (15%), Positives = 206/717 (28%), Gaps = 203/717 (28%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64 FID ET + LF G + P+ + D + P+++K+ + Sbjct: 26 FIDTETTPK---------------DIRLFQVGLESGPIYVIDFLFVKRAPELIKDIIAKK 70 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 V HN ++ L DI + T+V A+ GL ++ + + Sbjct: 71 GVA--GHNLKYDLKYLMKY---DIHPYTTFDTMVGAQLIGLNRV--SLASVYNHFTGESI 123 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 + KE + + E Y DV V R ++++L+ +KE Sbjct: 124 DKKEQFSNWSSKELT---------------ESQIFYAAKDVEVLRLLYEKLKNELNKEPT 168 Query: 185 LWYLDQT--------------------------INDRGYCVDVALAHTLNQIVDVERTKL 218 + + Q I G +D T+ + + + +L Sbjct: 169 IIEILQKSRVAKVFGLESTYAIIEMGFVQELAKIEHTGIGIDTKEIETMKKQLQKKTQEL 228 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVL-SSNKKLTPQAI 274 + +K+ +L + L + T VL +A Sbjct: 229 AMNFYIKYRIDI---SSPKKVGEFLENHLNISLPRTDKDNIITDDSVLIEHLDYENEKAK 285 Query: 275 QVFN---NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 V + + + KL+ ++E N + R+ +GA TGR S QN+PR Sbjct: 286 DVISSVLEFRKLHKLQ-EKLSEILEY-NENNRIHPEFWQIGA-VTGRMSSSRPNVQNIPR 342 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 +RS + A +G V+AD + IE R+ A Sbjct: 343 -------------------------------ELRSILKAKDGYVFVIADFSQIELRIAAE 371 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ + GEDL+ T + + +TK++R K L Y K+ Sbjct: 372 YVKDEVMIDIINKGEDLHKFTASLITGKSLEDITKEERQRAKAANFGLIYGISEKSLSLY 431 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A ++ +R ++ + Sbjct: 432 AR--------------------------------------NSYGIDMSIEEAKRFREVFF 453 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + + + + E + + Sbjct: 454 STFQGIKAWHERIKKELKAKGE----------------------------------IRLK 479 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-----------NATKA 620 +G T T +Q ++L ++ + Sbjct: 480 TIGGKPMIAYTFT-----------DAANYPIQGTGAELLKLSVLIFSQELKRAFPSIFHE 528 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAK-GLPLKAEGYESKRYRK 675 ++V VHDEIV E + + S L M S + ++ E + R+ K Sbjct: 529 VANVVNLVHDEIVVEAKEDYKEEVSKLLEKSMKKAGSILLNNVKIETEIVINHRWTK 585 >gi|29566063|ref|NP_817633.1| gp44 [Mycobacterium phage Bxz2] gi|29424788|gb|AAN01798.1| gp44 [Mycobacterium phage Bxz2] Length = 604 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 109/674 (16%), Positives = 211/674 (31%), Gaps = 157/674 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L +D ET G+ Y++D L FG + + P + ++AL N Sbjct: 38 LGLDTETT--------GLDIYSDDFRCRLVQFGTPN-EAWVIPVELGPRYEEEARQALRN 88 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKAVG 113 V HN+ ++ V++ + + + T +LA L+ + Sbjct: 89 VK-GFVLHNASYDLQVIERTLGIPMEDMWPKVTDTKILAHLVDPRPFKEGGIGHKLEELV 147 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + E K L+A + + K + + Y D + + + Sbjct: 148 KHY-IDANVAENVKTLMATLAREYKTTKAHIWTKVELTNPY--YQLYSGMDPILAARLLQ 204 Query: 174 RLEPLSS--------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +L PL E +L + + RG+ +DV + L++ + ++ + + L Sbjct: 205 KLIPLVPAVSQDLVPYEHKLAEICSYMERRGFLLDVEYSEKLSEDMLRKQDYWASKADIL 264 Query: 226 TYGLVSSSRCLEKLKTWLFL---ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + + ++ L + E + +L K + + Sbjct: 265 YG--LENVNSPIQVAEALMRRGVKIKERTETGQPKVDKVLLDRLIKEGDPLAEAITEAKK 322 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + + +++ +S R + L A RT R S P Q LP Sbjct: 323 WGKWEKTWVRKFLDSRDSKDRCHANINPLQA-RTARMSITGIPAQTLPSGD--------- 372 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 VR C +A EG+ + D E RVLA ++G++ ++AF Sbjct: 373 -------------------WLVRRCFLADEGQLMASVDYQAQELRVLAALSGDRTMIQAF 413 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + G DL++ A Sbjct: 414 KDGADLHL-----------------MTARAAWP--------------------------- 429 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + +S ++ NF R A + A ++V + + + V L Sbjct: 430 DREITKDSPERKYAKTVNFGRVYGGGAKTVAEQTGLDMEAAKQVVDGFDRAYPGVQRLSA 489 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 +L + N ++ P GR L V +R+Y Sbjct: 490 KLQREA--------------------------SQNGHIVTPKGRRLP---VDPSRAY--- 517 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETPDTD 640 ++Q+ SRD+ E ++ +AG+ + L +HDEI+ P+ Sbjct: 518 -------------SALNYLIQSTSRDVTGEALIRLHEAGFTKYLRLPIHDEILASVPEDK 564 Query: 641 EFN-ASMLYHLMTS 653 A + LM Sbjct: 565 AQWGAQEIARLMAE 578 >gi|301762338|ref|XP_002916602.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Ailuropoda melanoleuca] Length = 1040 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 97/618 (15%), Positives = 176/618 (28%), Gaps = 136/618 (22%) Query: 67 TIVAHNSY-FERTVLKACFNLDIPIHRWI-----CTLVLARSNGL----PSALKAVGEAL 116 ++ N+ F RTVL F D + + A PS V + L Sbjct: 308 PVICFNAKDFVRTVL-QFFGHDGSWKHVVHFVGLDPRIAAWLIDPGDAAPSFEDLVAKYL 366 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + I+ + N R ++ + +++ + Sbjct: 367 ----------ESSISVKVNSTYGNSSRNVVNQNVRVNLKILYR-LTMGLCSQLKVYGLWQ 415 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + E L + + VD + ++ +L+QE + Sbjct: 416 LFCTLELPLIPILAVMESHSIQVDREEMERTSALLGSRLKELEQEAHFVAG-EQFLITSN 474 Query: 237 EKLKTWLFLETGLHL-------EDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 +L+ LF + L L +T + VL + + L P + R + Sbjct: 475 NQLREVLFGKLKLPLLSPRETLPRTGLQRLPSTSEAVLRALQDLHPLPKIILEYRR-VHK 533 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + ++ L+ A G + T G + TGR S Q + + + Sbjct: 534 TKSAFVDGLL-ACMRKGSISSTWNQTG-TVTGRLSARHPNIQGISKHPIQITKPQNFKGV 591 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET- 404 +T P RS +A EG + AD + IE R+LA ++G+ LK F+ Sbjct: 592 EGAMLTISP----------RSMFVAPEGHTFLAADFSQIELRILAHLSGDPELLKLFQES 641 Query: 405 -GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 +D++ T ++ V P VT R K + + Y Sbjct: 642 ERDDVFSTLTSQWKGVPPEHVTHADREQTKKVVYSAVY---------------------- 679 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 A +++ QK+ +V + Sbjct: 680 ----------------------GAGKERLAACLGVTVQEAAWFLESFLQKYKKVKDF--- 714 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + Q + G GR V R+ Sbjct: 715 VQTTIAQCHQTGYVASI-----------------------MGRRRPLPRV---RAQDQQL 748 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCET 636 Q R+ +VQ + D+ M+ A +V +HDE++ E Sbjct: 749 RAQAERQA------VNFVVQGSAADLCKMAMIRVFAAVAASPTLTARLVAQIHDELLFEV 802 Query: 637 PDTDEFNASMLYH-LMTS 653 D+ + L M S Sbjct: 803 DDSQIPELAALVRGTMES 820 >gi|218282129|ref|ZP_03488428.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989] gi|218216922|gb|EEC90460.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989] Length = 858 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 102/691 (14%), Positives = 192/691 (27%), Gaps = 161/691 (23%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65 D E + L C Y + + F D + + ALE+T+ Sbjct: 302 FDIE--DLMVLPVCTQQPYLDQ-QLYGFMIP-KDKTIYYISVEN----------ALEDTN 347 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSALKAVGEALK 117 + L+ T + L G L Sbjct: 348 FKKI----------------LETKEISTWDTKEMMHLLDRYGFKWNTFNDDLHIAGFLLN 391 Query: 118 -LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 ++ + L + + +P + +T++++++ Sbjct: 392 STATDSDAVLEALHITLPESFHDVSKKTKEEPAFSLNREQALCHS-----LTQQLYEKKG 446 Query: 177 PLS-------------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + E L + ++ G + + +++ + L Q++ Sbjct: 447 EILQSLKEENVLSLYREIEMPLTRVLFSMEQEGISIQESFLDEYGALLNEKLETLAQQIY 506 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 S + + ++L LF E L +T VL + P + R + Sbjct: 507 SHAGM-IFNINSPKQLANVLFDELNLSSGGKKRSTSADVLEKLRGKHPIVDDILEYR-KI 564 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 S+ + ++ L + + SD ++ + ++TGR S QN+ +E Sbjct: 565 SKVSSTYIDGLKKHIRSDQKIHTSFNQTM-TQTGRLSSSEPNLQNISIRDELGKE----- 618 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +R +A EG L+ AD + IE R+LA MA E +KAF Sbjct: 619 --------------------IRKAFVAQEGYHLLSADYSQIELRMLAHMANEDHMIKAFN 658 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G D++ T FN +P +V + +R I K + + Y + ++ LN+ Sbjct: 659 EGLDIHTKTATLIFNCSPEEVDEHKRRIAKTVNFGIVYGQT-----EFGLSSQLNITRKE 713 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 E + + + + E+ + E K+ E Sbjct: 714 AGEFMKMYFESYPKIHEYMNQLIDFCKENGYVETLFHRRRE--IPEINDKNFMTREFGK- 770 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 +A G A K + + KD N ML Sbjct: 771 --RAAMNAPIQGSAADLIKIAMLKMDQALKDANVNSKML--------------------- 807 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 + +V PD + Sbjct: 808 -------------------------------LQIHDELIFLV-----------PDEELDL 825 Query: 644 ASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 L M S +PLKA K + Sbjct: 826 MQKLVKETMESAME--LKVPLKASISVGKSW 854 >gi|315222865|ref|ZP_07864749.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211] gi|315188059|gb|EFU21790.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211] Length = 881 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 99/658 (15%), Positives = 192/658 (29%), Gaps = 130/658 (19%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKAC 83 ++ FA+ + D + Q KE L NT V ++ VL + Sbjct: 337 EMVGFAW----GNAQQIYASQDINLLQQPAFKEFLGNTA-LKV-----YDFKRSKVLLSR 386 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 +++ + + + L K ++ + + Sbjct: 387 LGIELSQPS-FDSRLAKYLL-STVDNNEIATIANLYG-KTRLVEDEVVYGKGAKRALPEK 443 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 + + E K + R+ +L L EQ L ++ + G V+ Sbjct: 444 AILLSHLARKVTVLVETEKPMTDLLRQ-HDQLNLLYEMEQPLAFVLAKMEIAGIKVERET 502 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE---TT 258 T+ + +L QE+ L + ++L LF + GL T+ +T Sbjct: 503 LQTMQTENEEVLARLTQEIYDLAG-EEFNINSPKQLGGILFEKLGLPTSFTKKTKTGYST 561 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + P ++ + R ++ + L + + +DG++ ++TGR Sbjct: 562 AVDVLERLAPIAPIVEKILDYRQ-IAKIQSTYVMGLQDWILADGKIHTRYLQD-LTQTGR 619 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377 S QN+P +R + + L+ Sbjct: 620 LSSVDPNLQNIPIRLEQGR-------------------------LIRKAFVPEWKDSVLL 654 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVME 436 +D + IE RVLA ++G++ ++AF G D++ +T R F + P VT + R K + Sbjct: 655 SSDYSQIELRVLAHISGDEHLIEAFRHGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVN 714 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y L ++ ++ E + +N+ + + + Sbjct: 715 FGVVYGIS-----DFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDKGYVE 769 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 E ++ V + + G A K + L D N Sbjct: 770 TLFHRRRE--IPDINSRNFNVRGF---AERTAINSPIQGSAADILKIAMIRLDQALTDGN 824 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 ML + Sbjct: 825 FKTRML----------------------------------------------------LQ 832 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 IVL V P+ + L +M S +PLKA+ K + Sbjct: 833 VHDE---IVLEV--------PENELTAIKTLVKDIMESAIELV--VPLKADESAGKTW 877 >gi|312867003|ref|ZP_07727214.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405] gi|311097485|gb|EFQ55718.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405] Length = 881 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 96/661 (14%), Positives = 184/661 (27%), Gaps = 138/661 (20%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFNL 86 +I FA+G H + + KE LE V ++ VL + + Sbjct: 338 IIGFAWGTKGH--LYASTDTGLLQTPIFKEFLE-KTPLKV-----YDFKRAKVLLSHLGI 389 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + + + + + IA + + Sbjct: 390 TLQ-NPAFDSRLAKYLL---------STVEDNEISTIASLYSQIALPLDEVVYGKGAKKA 439 Query: 147 KPNHREAWRLFGEYCK--GDVT--VTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVD 200 P D +T ++ + EQ L + + G V+ Sbjct: 440 IPEKAVLLEHLARKVAVLLDTEEPMTEQLKAHDQLDLLYDMEQPLAAVLAKMEIAGIKVE 499 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256 + + +L QE+ L + ++L LF + L L T+ Sbjct: 500 RQTLQDMQVENEAVLERLTQEIYELAG-EEFNINSPKQLGVILFEKLELPLEYTKKTKTG 558 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + P ++ R ++ + L + + DG++ ++ Sbjct: 559 YSTAVDVLERLAPIAPIVSKILEYRQ-IAKIQSTYVIGLQDWILEDGKIHTRYVQD-LTQ 616 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK- 374 TGR S QN+P +R + E Sbjct: 617 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEEENS 651 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGK 433 L+ +D + IE RVLA ++G++ + AF+ G D++ +T R FN+ P VT + R K Sbjct: 652 VLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEKPEDVTPNDRRNAK 711 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y + L ++ + E + +++ + + Sbjct: 712 AVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKG 766 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + E ++ V + + G A K Sbjct: 767 YVETLFKRRRE--IPDINSRNFNVRGF---AERTAINSPIQGSAADILKI---------- 811 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + + L R Y K+ Sbjct: 812 -------------------------AMIHLDQALERGA-YKTKM---------------- 829 Query: 614 MMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672 ++ IVL V P + L M S +PL+A+ E K Sbjct: 830 LLQVHDE---IVLQV--------PSDELAAIKELVKETMESAIELV--VPLEADENEGKT 876 Query: 673 Y 673 + Sbjct: 877 W 877 >gi|114592892|ref|XP_001147229.1| PREDICTED: polymerase (DNA directed) nu isoform 1 [Pan troglodytes] Length = 900 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 93/648 (14%), Positives = 184/648 (28%), Gaps = 149/648 (22%) Query: 67 TIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPSALKAVGEALKLSS 120 ++ N+ F R VL F D + A Sbjct: 315 PVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPS-------------- 359 Query: 121 QKMEEGKELIARFCKGETHE------CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 ++L+ ++C+ RN N L Y + + + ++ Sbjct: 360 DATPSFEDLVEKYCEKSLTVKVNSTYGNSSRNIVNQNVCENLKTLY-RLTMDLCSKLKDY 418 Query: 175 LEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 EL + + V+ + ++ +L+QE + Sbjct: 419 GLWQLFCTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAG-ERFL 477 Query: 233 SRCLEKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNRM 281 +L+ LF + L L + +T + VL++ + L P + R Sbjct: 478 IMSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQ 537 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ L+ A G + T G + TGR S Q + + Sbjct: 538 -VHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPKN 594 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +T P R+ ++S+G + AD + IE R+LA ++G+ LK Sbjct: 595 FKGKEDKILTISP----------RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKL 644 Query: 402 FET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F+ +D++ T ++ +V QVT R K + A+ Y Sbjct: 645 FQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVY------------------ 686 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + +++ QK+ ++ + Sbjct: 687 --------------------------GAGKERLAACLGVPVQEAAQFLESFLQKYKKIKD 720 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 A Q + G + GR + ++ Sbjct: 721 F---ARAAIAQCHQTGCVVSI-----------------------MGRRRPLPRIH---AH 751 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632 Q R+ +VQ + D+ M++ +V +HDE+ Sbjct: 752 DQQLRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDEL 805 Query: 633 VCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674 + E D A+++ M +PLK + + Sbjct: 806 LFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSWG 853 >gi|306828647|ref|ZP_07461840.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249] gi|304429153|gb|EFM32240.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249] Length = 889 Score = 217 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 100/667 (14%), Positives = 190/667 (28%), Gaps = 148/667 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKAC 83 ++ FA+ D + Q LKE LE T V ++ VL Sbjct: 345 DLVGFAWSCGDK----LYATDKLELLQDPILKEFLEKTS-LKV-----YDFKKAKVLLNR 394 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALK--AVGEALK---LSSQKMEEGKELIARFCKGET 138 L++ + + + + L+ + GK + + E Sbjct: 395 LGLNLQ-APAFDSRLAKYLLSTVENNEISTIANLYGQTYLADDETFYGKGVKKAIPEREK 453 Query: 139 HECLYDRNKP----NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 R GE+ + D+ ++ EQ L ++ + Sbjct: 454 FLEHLARKVAVLVETEPVLLEKLGEHGQLDL-----LY-------DMEQPLAFVLAKMEI 501 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--E 252 G V + ++ KL QE+ L + ++L LF + GL L Sbjct: 502 AGIKVKKETLLEMQAENELVIEKLTQEIYELAG-EEFNINSPKQLGVLLFEKLGLPLEYT 560 Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T+ +T VL + P ++ + R ++ + L + + DG++ Sbjct: 561 KKTKTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVVGLQDWILDDGKIHTRYV 619 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 ++TGR S QN+P +R + Sbjct: 620 QD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFV 653 Query: 370 AS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKD 427 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + Sbjct: 654 PEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPN 713 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K + + Y + L ++ ++ E + +N+ + Sbjct: 714 DRRNAKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVR 768 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + + E R + + + + G A K + Sbjct: 769 EARDKGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQ 823 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 L + ML Sbjct: 824 LDKALVEGGYQTKML--------------------------------------------- 838 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 + IVL V P ++ +L M +PL A+ Sbjct: 839 -------LQVHDE---IVLEV--------PKSELAAVKVLVKQTMEEAIQ--LSVPLIAD 878 Query: 667 GYESKRY 673 E + Sbjct: 879 ENEGATW 885 >gi|225867770|ref|YP_002743718.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus] gi|225701046|emb|CAW97839.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus] Length = 886 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 95/662 (14%), Positives = 188/662 (28%), Gaps = 143/662 (21%) Query: 32 LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDI 88 L F + + + ++ K+ LE + ++ VL + LD+ Sbjct: 344 LIGFAWGNQGQIYASADISLLTTELFKKVLEQPI-------ATYDFKRSKVLLSHLGLDL 396 Query: 89 PIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 P + + + L + + L + ++ GK + Sbjct: 397 PAASY-DARLANYLLSTVEDNEMATLARLYTTIPLDTDEVVYGKGVKRAVPDKAVLLGHL 455 Query: 144 DRN----KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 R + E+ + D+ E L + + G V Sbjct: 456 ARKVQVLLDSRPVMLDKLAEHEQADLYT------------DIELPLANVLAKMEIEGIAV 503 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE- 256 + + + V +L QE+ + V + ++L LF + L L T+ Sbjct: 504 NQDSLQEMAEQNKVVIEELTQEIYEMAG-EVFNINSPKQLGVILFEKMQLPLHLTKKTKT 562 Query: 257 --TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 +T VL + P ++ + R ++ + L + + +DGR+ + Sbjct: 563 GYSTAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYIMADGRIHTRYLQD-LT 620 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EG 373 +TGR S QN+P +R S + Sbjct: 621 QTGRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHDD 655 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIG 432 L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P VT + R Sbjct: 656 AVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNA 715 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y + L + ++ E + +++ + + Sbjct: 716 KAVNFGIVYGIS-----DFGLSNNLGIPRKQAKAYIDTYFERYPGIKDYMERVVREAKDK 770 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + RQ V + + G A K + L Sbjct: 771 GYVETLFKRRRQLPDINSRQ--FNVRSF---AERTAINSPIQGSAADILKIAMINLDQAL 825 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 ML Sbjct: 826 VAGGFETKML-------------------------------------------------- 835 Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 + IVL V P+ + L M S + A +PL+ + K Sbjct: 836 --LQVHDE---IVLEV--------PNHELAAVKELVKETMESAVNLA--VPLRVDESAGK 880 Query: 672 RY 673 + Sbjct: 881 SW 882 >gi|300787986|ref|YP_003768277.1| DNA polymerase I [Amycolatopsis mediterranei U32] gi|299797500|gb|ADJ47875.1| DNA polymerase I [Amycolatopsis mediterranei U32] Length = 882 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 95/656 (14%), Positives = 188/656 (28%), Gaps = 118/656 (17%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD-VTIVAHNSYFERTVLKACFNLD 87 + AF D D A + H+ + Sbjct: 329 DLRAIAFATADGEGAYVDVTAMDQADDAALAAWLADPAIRKTGHDLKTPLHAI-RARGWV 387 Query: 88 IPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + T + A L + + E E L Sbjct: 388 LSGLAM-DTALAAYLVRPGQRTFELDDLALRYLHRELRSETDGGDGQLSLLDGGAEGLEQ 446 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 + + R E + E + L+ E L + + G VD+ Sbjct: 447 KEIQDELVKARAIFELAGA-LEKELEQIGGAKLLAELELPLLEVITELEIAGVAVDLEQL 505 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261 TL T+ +E ++ + + ++L+ LF E G+ T+T T Sbjct: 506 TTLEAHYLSRVTQAAEEAYAVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDAE 564 Query: 262 VLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 L K P + +R A++ + L++++ DGR+ TL A+ TGR Sbjct: 565 ALQGLFEKTEHPFLQHMLEHR-DATKLRTT-VEGLIKSVADDGRIHTTLLQTIAA-TGRL 621 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVV 378 S QN+P + +R + EG L+ Sbjct: 622 SSTEPNLQNIPVRTEEGRR-------------------------IRDAFVVGEGFTELMT 656 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++ ++ ++AF +GEDL+ +R+F++ P ++T + R K M Sbjct: 657 ADYSQIEMRIMAHLSQDEGLIEAFNSGEDLHTFVASRAFSMPPEEITPELRYRVKAMSYG 716 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 L Y + L ++T + + + + ++ + ++ + Sbjct: 717 LAYG-----LSAYGLSQQLRISTEDAKSQMEAYFDRFGGVRDYLHSVVGVAAKNGYTETV 771 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 G +S + + G A K + + Sbjct: 772 FGRRRYLP-----DLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLNVH--------- 817 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+LV + + ++ Sbjct: 818 -------RALVEAKLKSRI------------------------------------LLQVH 834 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 +V E + ++ L M S +A +PL+ + + Sbjct: 835 DE-----------LVLEVAEGEKEQLEQLVREGMGSA--YALAVPLEVSVGYGRSW 877 >gi|332818964|ref|XP_001147379.2| PREDICTED: DNA polymerase nu isoform 3 [Pan troglodytes] Length = 1502 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 93/648 (14%), Positives = 184/648 (28%), Gaps = 149/648 (22%) Query: 67 TIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPSALKAVGEALKLSS 120 ++ N+ F R VL F D + A Sbjct: 917 PVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPS-------------- 961 Query: 121 QKMEEGKELIARFCKGETHE------CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 ++L+ ++C+ RN N L Y + + + ++ Sbjct: 962 DATPSFEDLVEKYCEKSLTVKVNSTYGNSSRNIVNQNVCENLKTLY-RLTMDLCSKLKDY 1020 Query: 175 LEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 EL + + V+ + ++ +L+QE + Sbjct: 1021 GLWQLFCTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAG-ERFL 1079 Query: 233 SRCLEKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNRM 281 +L+ LF + L L + +T + VL++ + L P + R Sbjct: 1080 IMSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQ 1139 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ L+ A G + T G + TGR S Q + + Sbjct: 1140 -VHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPKN 1196 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +T P R+ ++S+G + AD + IE R+LA ++G+ LK Sbjct: 1197 FKGKEDKILTISP----------RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKL 1246 Query: 402 FET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F+ +D++ T ++ +V QVT R K + A+ Y Sbjct: 1247 FQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVY------------------ 1288 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + +++ QK+ ++ + Sbjct: 1289 --------------------------GAGKERLAACLGVPVQEAAQFLESFLQKYKKIKD 1322 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 A Q + G + GR + ++ Sbjct: 1323 F---ARAAIAQCHQTGCVVSI-----------------------MGRRRPLPRIH---AH 1353 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632 Q R+ +VQ + D+ M++ +V +HDE+ Sbjct: 1354 DQQLRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDEL 1407 Query: 633 VCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674 + E D A+++ M +PLK + + Sbjct: 1408 LFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSWG 1455 >gi|293364474|ref|ZP_06611200.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037] gi|291317320|gb|EFE57747.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037] Length = 889 Score = 216 bits (551), Expect = 7e-54, Method: Composition-based stats. Identities = 94/664 (14%), Positives = 178/664 (26%), Gaps = 142/664 (21%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKAC 83 ++ FA+ D + Q KE LE T V ++ VL Sbjct: 345 DLVGFAWSCGDK----LYATDKLELLQEPIFKEFLEKTS-LKV-----YDFKKAKVLLNR 394 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 L++ + + + + Sbjct: 395 LGLNLQ-APAFDSRLAKYLL---------STVENNEISTIASLYSQTYLVDDETFYGKGV 444 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGY 197 + P + V + ++L EQ L ++ + G Sbjct: 445 KKAIPEREKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGI 504 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLT 255 V + +V +L QE+ L + ++L LF + GL L T Sbjct: 505 KVKKETLLEMQAENEVVIEQLTQEIYELAG-EEFNINSPKQLGVLLFEKLGLPLEYTKKT 563 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T VL + P ++ + R ++ + L + + DG++ Sbjct: 564 KTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILDDGKIHTRYVQD- 621 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P +R + Sbjct: 622 LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEW 656 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 716 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + Y L ++ ++ E + +N+ + Sbjct: 717 NAKAVNFGVVYGIS-----DFGLANNLGISRKKAKAYIDTYFERFPGIKNYMEEVVREAR 771 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + + E R + + + + G A K + L Sbjct: 772 DKGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQLDK 826 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + ML Sbjct: 827 ALVEGGYQTKML------------------------------------------------ 838 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYE 669 + IVL V P ++ L M +PL A+ E Sbjct: 839 ----LQVHDE---IVLEV--------PKSELAAVKDLVKQTMEEAIQ--LSVPLIADENE 881 Query: 670 SKRY 673 + Sbjct: 882 GATW 885 >gi|322390655|ref|ZP_08064169.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 903] gi|321142628|gb|EFX38092.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 903] Length = 881 Score = 216 bits (551), Expect = 8e-54, Method: Composition-based stats. Identities = 101/666 (15%), Positives = 192/666 (28%), Gaps = 148/666 (22%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFE---RTVLKACF 84 +I FA+G D + Q + KE LE V ++ VL + Sbjct: 338 IIGFAWGTKGQ----LYASTDTALLQTPIFKEFLE-KTPLKV-----YDFKRAKVLLSHL 387 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 ++ + + + + ++ L ++ Sbjct: 388 DITLQ-KPAFDSRLAKYLLS------------TVEDNEISTIASLYSQIALPLDEVVYGK 434 Query: 145 RNKPNHREAWRLFGEYCKGDVTV---------TREIFKRLEPLSSKEQELWYLDQTINDR 195 K E L + + + +L+ L EQ L + + Sbjct: 435 GAKKAIPEKTALLEHLARKVAVLLDTEEPMVEQLQAHDQLDLLYDMEQPLAAVLAKMEIA 494 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--ED 253 G V+ + +V +L QE+ L + ++L LF + GL L Sbjct: 495 GIKVERQTLEDMQVENEVVLERLTQEIYELAG-EEFNINSPKQLGVILFEKLGLPLEYTK 553 Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+ +T VL + P ++ R ++ + L + + DG++ Sbjct: 554 KTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-IAKIQSTYVIGLQDWILEDGKIHTRYVQ 612 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 ++TGR S QN+P +R + Sbjct: 613 D-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVP 646 Query: 371 SEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQ 428 E L+ +D + IE RVLA ++G++ + AF+ G D++ +T R FN+ P VT + Sbjct: 647 EEENSVLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPEDVTPND 706 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + + Y + L ++ + E + +++ + Sbjct: 707 RRNAKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVRE 761 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + + E ++ V + + G A K Sbjct: 762 ARDKGYVETLFKRRRE--IPDINSRNFNVRGF---AERTAINSPIQGSAADILKI----- 811 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + + L R Y K+ Sbjct: 812 ------------------------------AMIHLDQALERGA-YKTKM----------- 829 Query: 609 ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667 ++ IVL V P + L M S A +PL+A+ Sbjct: 830 -----LLQVHDE---IVLQV--------PSDELAAIKELVKETMESAIELA--VPLEADE 871 Query: 668 YESKRY 673 E K + Sbjct: 872 NEGKTW 877 >gi|195977329|ref|YP_002122573.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974034|gb|ACG61560.1| DNA polymerase I PolA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 899 Score = 216 bits (551), Expect = 8e-54, Method: Composition-based stats. Identities = 95/662 (14%), Positives = 188/662 (28%), Gaps = 143/662 (21%) Query: 32 LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDI 88 L F + + + ++ K+ LE + ++ VL + LD+ Sbjct: 357 LIGFAWGNQGQIYASADISLLTTELFKKVLEQPI-------ATYDFKRSKVLLSHLGLDL 409 Query: 89 PIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 P + + + L + + L + ++ GK + Sbjct: 410 PAASY-DARLANYLLSTVEDNEMATLARLYTTIPLDTDEVVYGKGVKRAVPDKAVLLGHL 468 Query: 144 DRN----KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 R + E+ + D+ E L + + G V Sbjct: 469 ARKVQVLLDSRPVMLDKLAEHEQADLYT------------DIELPLANVLAKMEIEGIAV 516 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE- 256 + + + V +L QE+ + V + ++L LF + L L T+ Sbjct: 517 NQDSLQEMAEQNKVVIEELTQEIYEMAG-EVFNINSPKQLGVILFEKMQLPLHLTKKTKT 575 Query: 257 --TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 +T VL + P ++ + R ++ + L + + +DGR+ + Sbjct: 576 GYSTAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYIMADGRIHTRYLQD-LT 633 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EG 373 +TGR S QN+P +R S + Sbjct: 634 QTGRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHDD 668 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIG 432 L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P VT + R Sbjct: 669 AVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNA 728 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y + L + ++ E + + + + + Sbjct: 729 KAVNFGIVYGIS-----DFGLSNNLGIPRKQAKAYIDTYFERYPGIKAYMERVVREAKDK 783 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + RQ + L + + + G A K + L Sbjct: 784 GYVETLFKRRRQLPDINSRQFN-----LRSFAERTAINSPIQGSAADILKIAMINLDQAL 838 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 ML Sbjct: 839 VAGGFETKML-------------------------------------------------- 848 Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671 + IVL V P + L M S + A +PL+ + K Sbjct: 849 --LQVHDE---IVLEV--------PSHELAAVKELVKETMESAVNLA--VPLRVDESAGK 893 Query: 672 RY 673 + Sbjct: 894 SW 895 >gi|332701547|ref|ZP_08421635.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay] gi|332551696|gb|EGJ48740.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay] Length = 882 Score = 216 bits (550), Expect = 9e-54, Method: Composition-based stats. Identities = 94/604 (15%), Positives = 167/604 (27%), Gaps = 139/604 (23%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI-ARFC 134 + L P+ RW + A E Q++ + L Sbjct: 408 DWACL--------PLDRWFDLGLAAYLLNP--------EERSYDWQRLRDSLALDPDAEA 451 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 L + H + + R++ E L + + Sbjct: 452 VHPQANGLAAKAL--HDVLAKRLA--AANLTELLRDL----------EMPLVPVLVAMEQ 497 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 G +D A + V+ + +L + ++ + R ++L LF GL + Sbjct: 498 AGIAIDKAAFESFLSEVNAQIGELTSRIHAVAEMP-FNIRSNQQLAQLLFDRLGLKAKGK 556 Query: 255 TE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T +T VL + P + R + L L + + GR+ T Sbjct: 557 TPGGAQSTANPVLEKLRNEHPVVADILEFR-MLEKLRSTYLEPLPKLADEQGRIHTTFNQ 615 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 L A+ TGR S QN+P +R+C A Sbjct: 616 L-ATATGRLSSSAPNLQNIPIRGPQGTR-------------------------MRACFTA 649 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 G L AD + IE RVLA M+ + L+AF G+D++ T F+ QV D+R Sbjct: 650 GPGCLLAAADYSQIELRVLAHMSQDPTLLEAFRHGQDIHARTAGLIFDKDAGQVAPDERR 709 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + L Y G + L + + F + + Sbjct: 710 SAKTINFGLLYGMGPQKLAAE-----LGIALAQAKEFIERYFVGLSKLKEFYDSIVKEAE 764 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 ++ +G R+ ++ + QA Q I Sbjct: 765 QNGSVVTMLGR--RRLLPDIHSRNDNLKA------QAVRQAINTRI-------------- 802 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + I+ L R + GG+L Sbjct: 803 --QGSAADIIKLAMIR-----------------AHADEKIRALGGRLI------------ 831 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYE 669 + ++ ETP+ A + + +M +PL + Sbjct: 832 ----LQVHDE-----------LLLETPEATAQEAGARMKEIMAGIVE--LSVPLVVDMGV 874 Query: 670 SKRY 673 + + Sbjct: 875 GRNW 878 >gi|296140146|ref|YP_003647389.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162] gi|296028280|gb|ADG79050.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162] Length = 917 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 97/659 (14%), Positives = 187/659 (28%), Gaps = 136/659 (20%) Query: 35 FGFDDHPVELWDC----VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 D HD L L + H + + L++ ++ Sbjct: 370 IAAPDDEGGYIALETLTPHDE---AALGAWLADATRPKAVHEAKWAMHGLESR-GWEL-G 424 Query: 91 HRWICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 T + A L + + + +T L D Sbjct: 425 GLTSDTAIAAYLVRPGQRSFNLDDLSVRYLHRELR-------VESAAGDDTQLSLLDDPD 477 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLDQTINDRGYCVDV 201 + E + + V + + + LE + E L + + G VD Sbjct: 478 DSAAEKAQQQILRARAVVDLAAALDEELEKIESKPLLEEMELPLLRVLGVMEATGIAVDT 537 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT--- 258 +L+ + + + ++L+ LF + GL T+T Sbjct: 538 DHLESLHSDFSDRIRAAEAAAFEEIGEQI-NLGSPKQLQVILFEKLGLPKTKKTKTGYTT 596 Query: 259 CQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 L + K+ P + +R A+R V + L++A+ SDGR+ T A+ T Sbjct: 597 DAAALEALYEKEPHPFLQYLLEHR-DATRLKVT-VEGLLKAVASDGRIHSTFNQTVAA-T 653 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-K 375 GR S QN+P + + +R +A EG Sbjct: 654 GRLSSTDPNLQNIPVRTEAGR-------------------------QIRHAFVAGEGYET 688 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ AD + IE R++A ++ ++ ++AF TGEDL+ A++F V +VT D R K M Sbjct: 689 LMTADYSQIEMRIMAHLSSDEGLIEAFNTGEDLHNFVGAKAFGVPIDEVTPDMRRRVKAM 748 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 L Y L ++ + + + ++ + + + Sbjct: 749 SYGLAYG-----LSAFGLAAQLKISRDEAKDQMEAYFARFGGVRDYLQDVVTEATRNEYT 803 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + +RR +P + Sbjct: 804 ETIF-----------------------------------------GRRRYLPDLTSTNRM 822 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 R + N + + K + + + ++ Sbjct: 823 ----------RRESAERMALNAPIQGSAADIIKVAMINLDKQIR------AAGLTSRMLL 866 Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 HDE+V E + L M + +PL+ + + Sbjct: 867 QV-----------HDELVLEVAAGERDELEKLVRDTMGTAAE--LSVPLEVSVGYGRSW 912 >gi|312865585|ref|ZP_07725810.1| DNA-directed DNA polymerase [Streptococcus downei F0415] gi|311098853|gb|EFQ57072.1| DNA-directed DNA polymerase [Streptococcus downei F0415] Length = 886 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 94/666 (14%), Positives = 185/666 (27%), Gaps = 153/666 (22%) Query: 33 FAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85 AF + + D + D + + L + ++ VL + Sbjct: 345 LAFSWGNKEAIYVSKNLDLLKDRLFVEAL------SKPIKT-----YDFKRSKVLLSHLG 393 Query: 86 LDIPIHRWICTLVLARSNG--LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 +++P + + + L + + K Sbjct: 394 IELPTAD-FDSRLAKYLLSTVEDNELSTIASLYGQTP------------LAKDVEVYGKG 440 Query: 144 -DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRG 196 + P + ++ + V + ++L E L + + G Sbjct: 441 AKKAVPEDQVLFQHLATKLQVLVETEPVLKEKLAEHGQSDLLFDMELPLANVLAKMEITG 500 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDL 254 V+ + V L QE+ + + ++L T LF E GL Sbjct: 501 IKVNRQTLKDMEVENQVTLDALTQEIYDMAGQ-EFNINSPKQLGTILFEEMGLPTSMTKK 559 Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 T+ +T VL P ++ R ++ + L + + DG++ Sbjct: 560 TKTGYSTAVDVLERLAPHAPIVAKILEYRQ-IAKLQSTYVVGLQDFILDDGKIHTRYLQD 618 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 ++TGR S QN+P +R Sbjct: 619 -LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFTPE 652 Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQR 429 E L+ +D + IE RVLA ++G++ + AF+ GED++ T R FN+A P VT + R Sbjct: 653 WEDSVLLSSDYSQIELRVLAHISGDEHLIAAFKNGEDIHTATAMRVFNIARPEDVTPNDR 712 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y + L ++ A + E + +++ + Sbjct: 713 RNAKAVNFGVVYGIS-----DYGLSQNLGISRKAAKNYIATYFERFPGIKDYMERVVREA 767 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + + R+ ++ + Sbjct: 768 KDKGYVETLFKR---------RRTLPDINSRNFNIRNFA--------------------- 797 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 R+ +N+ + N+ QA+ Sbjct: 798 --------------------------ERTAINSPIQGS--AADILKIAMINLDQALEAGS 829 Query: 610 LAEGM-MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667 M + IVL E P+ + L M S A +PL A+ Sbjct: 830 FKTKMLLQVHDE---IVL--------EVPNAELSAIKKLVKKTMESAIVLA--VPLLADE 876 Query: 668 YESKRY 673 K + Sbjct: 877 NSGKTW 882 >gi|282598651|ref|YP_003358748.1| gp45 [Mycobacterium phage Peaches] gi|255928178|gb|ACU41796.1| gp45 [Mycobacterium phage Peaches] Length = 608 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 106/676 (15%), Positives = 194/676 (28%), Gaps = 157/676 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L +D ET G+ Y + L FG + +K ALE Sbjct: 38 LGLDSETT--------GLDIYNDGFRCRLVQFGT-PSEAWVVPVERGGPYAGDVKRALEM 88 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKAVG 113 V HN+ ++ V + + + + T +LA +L+ + Sbjct: 89 VQ-GFVLHNAAYDLQVFERTLGVPMETMWPKVKDTRILAHLIDPRGKDEGGSGHSLEDLT 147 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + S + K L+A K + K + Y D + + + Sbjct: 148 RRY-IDSAVADNVKTLMADLAKANKTTKVNVWKK--VPFEDPHYQLYSGMDPILAARLIQ 204 Query: 174 RLEPLSSKEQELWY-------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 +L PL EL + + G+ +DV L+ + V+ E+ Sbjct: 205 KLAPLVKVSDELVENEHKLAAICSYMERTGFLLDVEYTEELSLDLQVK-ESHYNEIALNY 263 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN--KKLTPQAIQVFNNR 280 +++ L G+ ++ T + VLS + + Sbjct: 264 GCE--KVNSTDQVADVL-ESMGVRIKGRTPSGKRKVDDAVLSELVEHEKAGEFATAVIEA 320 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 +A + ++ ++ +S R + L A RT R S P Q LP Sbjct: 321 KKAGKWRKTWVDGFLKQRDSQNRCHAAINPLRA-RTARMSITGIPAQTLPAGD------- 372 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R C +A EG ++ D E RVLA ++ +Q ++ Sbjct: 373 ---------------------STIRRCFLADEGHRIASVDYQAQELRVLAALSKDQRMIQ 411 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF DL++ T +F + + Sbjct: 412 AFLDDADLHLMTARAAFGEHIQKDDPE--------------------------------- 438 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 ++ NF R A + ++V + + + V +L Sbjct: 439 ------------RKYAKVVNFGRVYGGGAKTVAEQTGLDMATAQKVVAGFDRAYPEVQKL 486 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 L + + I NG + GR L Sbjct: 487 SQRLQR---EAIRNGYITTP------------------FIDGLGGRRLPVDPQR------ 519 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETPD 638 ++Q+ SRD+ ++ AG+ + L +HDEI+ P Sbjct: 520 -------------AYSALNYLIQSSSRDVTCRALLRLHDAGFTPYLRLPIHDEILASVPA 566 Query: 639 TDEFN-ASMLYHLMTS 653 A+ + LM Sbjct: 567 EQAEWGANRIGELMAE 582 >gi|294102246|ref|YP_003554104.1| DNA polymerase I [Aminobacterium colombiense DSM 12261] gi|293617226|gb|ADE57380.1| DNA polymerase I [Aminobacterium colombiense DSM 12261] Length = 854 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 91/638 (14%), Positives = 182/638 (28%), Gaps = 155/638 (24%) Query: 43 ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLAR 101 V+ P L E L+ +V + +++ F D P+ R + Sbjct: 348 YWHGVVNAHAAPASLLEWLKTGNV------ITSDYKMMQGFFKEDAPLSDRVWDAQIAHY 401 Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 ++ S E + + + + N ++ +L Sbjct: 402 LLHPD------AKSHGPESWAAESIADPVEIAGQLWRVKNDLSSNIAQYQGLDKLM---- 451 Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 DV + + + G ++ + L+ +++ +++ Sbjct: 452 -RDVEIPL----------------IPVLWRMETWGIGLNRESFNGLDSDLEIRIVEIEDT 494 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT---PQAIQ 275 + G + +++ LF + + T+ +T VL K+ + + Sbjct: 495 IAEK-GGERINLNSPKQVAWLLFEKLNMPPIKETKTGYSTDVTVLEELVKMGLPEKEVPE 553 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + S+ ++ LV A + + L ++ TGR S QNLP Sbjct: 554 LILEHRELSKMRSGFVHPLVSAADENTDLIHGTFESTSTGTGRLSSRDPNLQNLP----- 608 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAG 394 S ++ ++ +G V AD + +E RVLA + Sbjct: 609 --------------------AFGQWSTRLKEGLVPHKDGNIFVAADYSQVELRVLAHLCD 648 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 E+ +AFE D++ T + FNV P VT + R Sbjct: 649 EKRLKEAFEARRDIHTETASWIFNVNPQMVTPELRRFA--------------KVVNFGLL 694 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ A + + + Sbjct: 695 YGMSSFGLASR------------------------------LGIGQQEAGDIINRYFRAL 724 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +V + + ++++ + G A+ GR +V Sbjct: 725 PKVRDY---IEKSYQDARKRGYAVT-----------------------DFGRIRPLDEVS 758 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629 N R +Q + DI M+ K +VL +H Sbjct: 759 VNPRDRGALKR----------IAVNTPIQGTAADIARMAMIKFYKHFEKRQNVHLVLQIH 808 Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAE 666 D +VCE ++ L +M S + +PLK E Sbjct: 809 DSLVCECAAEEKEAVVKDLTDIMESAAT--LSVPLKVE 844 >gi|225869715|ref|YP_002745662.1| DNA polymerase I [Streptococcus equi subsp. equi 4047] gi|225699119|emb|CAW92303.1| DNA polymerase I [Streptococcus equi subsp. equi 4047] Length = 886 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 95/662 (14%), Positives = 188/662 (28%), Gaps = 143/662 (21%) Query: 32 LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDI 88 L F + + + ++ K+ LE + ++ VL + LD+ Sbjct: 344 LIGFAWGNQGQIYASADISLLTTKLFKKVLEQPI-------ATYDFKRSKVLLSHLGLDL 396 Query: 89 PIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 P + + + L + + L + ++ GK + Sbjct: 397 PAASY-DARLANYLLSTVEDNEMATLARLYTTISLDTDEVVYGKGVKRAVPDKAVLLGHL 455 Query: 144 DRN----KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 R + E+ + D+ E L + + G V Sbjct: 456 ARKVQVLLDSRPVMLDKLAEHEQADLYT------------DIELPLANVLAKMEIEGIAV 503 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE- 256 + + + V +L QE+ + V + ++L LF + L L T+ Sbjct: 504 NQDSLQEMAEQNKVVIEELTQEIYEMAG-EVFNINSPKQLGVILFEKMQLPLHLTKKTKT 562 Query: 257 --TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 +T VL + P ++ + R ++ + L + + +DGR+ + Sbjct: 563 GYSTAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYIMADGRIHTRYLQD-LT 620 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EG 373 +TGR S QN+P +R S + Sbjct: 621 QTGRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHDD 655 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIG 432 L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P VT + R Sbjct: 656 AVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNA 715 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y + L + ++ E + + + + + Sbjct: 716 KAVNFGIVYGIS-----DFGLSNNLGIPRKQAKAYIDTYFERYPGIKAYMERVVREAKDK 770 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + RQ V + + G A K + L Sbjct: 771 GYVETLFKRRRQLPDINSRQ--FNVRSF---AERTAINSPIQGSAADILKIAMINLDQAL 825 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 ML Sbjct: 826 VAGGFETKML-------------------------------------------------- 835 Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESK 671 + IVL V P+ + ++ M S S A +PL+ + K Sbjct: 836 --LQVHDE---IVLEV--------PNHELAAVKALVKETMESAVSLA--VPLRVDESAGK 880 Query: 672 RY 673 + Sbjct: 881 SW 882 >gi|309807121|ref|ZP_07701098.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b] gi|308166472|gb|EFO68674.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b] Length = 512 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 79/620 (12%), Positives = 171/620 (27%), Gaps = 139/620 (22%) Query: 75 FERTVLKACFNL---DIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 F+ + L I + ++ + + L + + +E Sbjct: 7 FDLK--RNYVGLQRLGITLFNVTDDIMLASYIADSENN----AGDLGVLANSYQEF---- 56 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ------- 183 E + H + V V ++ ++ P + + Sbjct: 57 -YVQSDEIIYGKGKKQ---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKN 112 Query: 184 ---ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 + + + G V + +DV T L ++ L + ++L Sbjct: 113 IEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLG 171 Query: 241 TWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + L T+ +T VL + +P + + R S+ +N L++ Sbjct: 172 VILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDY 230 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 + +DG++ + TGR S QN+P + Sbjct: 231 IQADGKIHTRFLQ-TLTTTGRLSSVEPNLQNIPVKLEEGK-------------------- 269 Query: 358 QIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R + + L D + +E RVLA ++ E+ L+AF+ G D++ T + Sbjct: 270 -----QIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKI 324 Query: 417 FNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F ++ +VT R K + + Y L ++ N+ E++ Sbjct: 325 FGLSNLDEVTPLMRRHAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQY 379 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 +++ + + E + + R+ K+ + + + G Sbjct: 380 PQIKDYMKAAVKLAREKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQG 434 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 A K + +L R Sbjct: 435 SAADIIKI-----------------------------------AMIKMQSELERRK---- 455 Query: 596 KLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTS 653 L M+ ++ + P + L +M Sbjct: 456 --------------LKTKMILQIHDE-----------LLFDVPSEELDLIRTLVPEIMQQ 490 Query: 654 NPSWAKGLPLKAEGYESKRY 673 +PL A+ + Sbjct: 491 AAQ--LDVPLIADANWGHNW 508 >gi|322391169|ref|ZP_08064641.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780] gi|321145922|gb|EFX41311.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780] Length = 889 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 93/662 (14%), Positives = 183/662 (27%), Gaps = 138/662 (20%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFN 85 ++ FA+ D +L+ ++ + + V ++ VL F Sbjct: 345 DLVGFAWSCGD---KLYATDKLELLQDPILKDFLEKTPLKV-----YDFKKAKVLLNRFG 396 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 LD+ + + + L Q L+ + Sbjct: 397 LDLQ-APAFDSRLAKYLL-STVENNEISTIANLYGQTY-----LVDDETFYGK---GVKK 446 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYCV 199 P V + ++L EQ L ++ + G V Sbjct: 447 AIPERETFLEHLARKVAVLVETEPVLLEKLCENGQLDLLYEMEQPLAFVLAKMEIAGIKV 506 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE- 256 + ++ KL QE+ L + ++L LF + GL + T+ Sbjct: 507 KKETLLEMQAENELVIEKLTQEIYELAG-EEFNINSPKQLGELLFEKLGLPIEYTKKTKT 565 Query: 257 --TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 +T VL + P ++ + R ++ + L + + +DG++ + Sbjct: 566 GYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYMQD-LT 623 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EG 373 +TGR S QN+P +R + E Sbjct: 624 QTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWED 658 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIG 432 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 659 SVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNA 718 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y + L ++ ++ E + +N+ + + Sbjct: 719 KAVNFGVVYGIS-----DFGLSNNLGISRKDAKAYIDTYFERFPGIKNYMDEVVREARDK 773 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + E R + + + + G A K + L Sbjct: 774 GYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQLDKAL 828 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 + ML Sbjct: 829 VEGGYQTKML-------------------------------------------------- 838 Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESK 671 + IVL V P ++ L M +PL A+ E Sbjct: 839 --LQVHDE---IVLEV--------PKSELAAIKKLVKQTMEEAIQ--LSVPLIADENEGV 883 Query: 672 RY 673 + Sbjct: 884 TW 885 >gi|254253593|ref|ZP_04946910.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia dolosa AUO158] gi|124898238|gb|EAY70081.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia dolosa AUO158] Length = 736 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 48/345 (13%), Positives = 97/345 (28%), Gaps = 49/345 (14%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + H + Sbjct: 346 AFDTETTALDPMV----------ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVL 395 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ D V + ++ VL +++ TL+ + Sbjct: 396 ARLKPWLESADRRKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 453 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K K E + A EY D +T ++ + Sbjct: 454 ALRHLGIKTI----------KYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITLQLHRA 503 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E + ++ + + G +D AL H + + +L+ + Sbjct: 504 LYPQIAREPGLERVYREIEMPVSHVLRKMERTGVLIDDALLHAQSTEIATRLIELEAQAY 563 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + T +T + VL + P + + Sbjct: 564 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 622 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 R S+ + + + T R+ S Sbjct: 623 R-GLSKLKSTYTDKMPRMVIPATGRVHTNYAQAVRRSRAASHRTI 666 >gi|270291866|ref|ZP_06198081.1| DNA polymerase I [Streptococcus sp. M143] gi|270279394|gb|EFA25236.1| DNA polymerase I [Streptococcus sp. M143] Length = 877 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 99/667 (14%), Positives = 188/667 (28%), Gaps = 148/667 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKAC 83 ++ FA+ D + Q LKE LE V ++ VL Sbjct: 333 DLVGFAWSCGDR----LYATDKLELLQEPILKEFLE-KTPLKV-----YDFKKAKVLLNR 382 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALK--AVGEALK---LSSQKMEEGKELIARFCKGET 138 F L++ + + + + L + GK + + E Sbjct: 383 FGLNLQ-APAFDSRLAKYLLSTVENNEISTIANLYGQTYLVDDETFYGKGVKKAIPEREK 441 Query: 139 HECLYDRNKP----NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 R E+ + D+ ++ EQ L ++ + Sbjct: 442 FLEHLARKVAVLVETEPVLLEKLSEHGQLDL-----LY-------DMEQPLAFVLAKMEI 489 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--E 252 G V + +V +L QE+ L + ++L LF + GL L Sbjct: 490 AGIKVKKETLLEMQAENEVVIEQLTQEIYELAG-EEFNINSPKQLGVLLFEKLGLPLEYT 548 Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T+ +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 549 KKTKTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYV 607 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 ++TGR S QN+P +R + Sbjct: 608 QD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFV 641 Query: 370 AS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKD 427 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + Sbjct: 642 PEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPN 701 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K + + Y + L ++ ++ E + +N+ + Sbjct: 702 DRRNAKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVR 756 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + + E R + + + + G A K + Sbjct: 757 EARDKGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQ 811 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 L + ML Sbjct: 812 LDKALVEGGYQTKML--------------------------------------------- 826 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 + IVL V P + +L M +PL A+ Sbjct: 827 -------LQVHDE---IVLEV--------PKAELAAVKVLVKQTMEEAIQ--LSVPLIAD 866 Query: 667 GYESKRY 673 E + Sbjct: 867 ENEGATW 873 >gi|302858559|gb|ADL71305.1| gp45 [Mycobacterium phage Eagle] Length = 608 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 106/676 (15%), Positives = 195/676 (28%), Gaps = 157/676 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L +D ET G+ Y + L FG + +K ALE Sbjct: 38 LGLDSETT--------GLDIYNDGFRCRLVQFGT-PSEAWVVPVERGGPYAGDVKRALEM 88 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKAVG 113 V HN+ ++ V + + + + T +LA +L+ + Sbjct: 89 VQ-GFVLHNAAYDLQVFERTLGVPMEAMWPKVKDTRILAHLIDPRGKDEGGSGHSLEDLT 147 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + S + K L+A K + K + Y D + + + Sbjct: 148 RRY-IDSAVADNVKTLMADLAKANKTTKVNVWKK--VPFEDPHYQLYSGMDPILAARLIQ 204 Query: 174 RLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 +L PL E +L + + G+ +DV L+ + V+ E+ Sbjct: 205 KLAPLVKVSDELVDNEHKLAAICSYMERTGFLLDVEYTEELSLDLQVK-ESHYNEIALNY 263 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN--KKLTPQAIQVFNNR 280 +++ L G+ ++ T + VLS + + Sbjct: 264 GCE--KVNSTDQVADVL-ESMGVRIKGRTPSGKRKVDDAVLSELVEHEKAGEFATAVIEA 320 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 +A + ++ ++ +S R + L A RT R S P Q LP Sbjct: 321 KKAGKWRKTWVDGFLKQRDSQNRCHAAINPLRA-RTARMSITGIPAQTLPAGD------- 372 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +R C +A EG ++ D E RVLA ++ +Q ++ Sbjct: 373 ---------------------STIRRCFLADEGHRIASVDYQAQELRVLAALSKDQRMIQ 411 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF DL++ T +F + + Sbjct: 412 AFLDDADLHLMTARAAFGEHIQKDDPE--------------------------------- 438 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 ++ NF R A + ++V + + + V +L Sbjct: 439 ------------RKYAKVVNFGRVYGGGAKTVAEQTGLDMATAQKVVAGFDRAYPEVQKL 486 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 L + + I NG + GR L Sbjct: 487 SQRLQR---EAIRNGYITTP------------------FIDGLGGRRLPVDPQR------ 519 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETPD 638 ++Q+ SRD+ ++ AG+ + L +HDEI+ P Sbjct: 520 -------------AYSALNYLIQSSSRDVTCRALLRLHDAGFTPYLRLPIHDEILASVPA 566 Query: 639 TDEFN-ASMLYHLMTS 653 A+ + LM Sbjct: 567 EQAEWGANRIGELMAE 582 >gi|242280423|ref|YP_002992552.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638] gi|242123317|gb|ACS81013.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638] Length = 904 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 103/648 (15%), Positives = 187/648 (28%), Gaps = 136/648 (20%) Query: 37 FDDHPVELWDCVHDPVM----PQVLKEALENTDVTIVAHNSYFERTVLKACFN--LDIPI 90 + + D +M L L++ +VA + + I + Sbjct: 378 VREGNIFFIGVDGDELMCKVTAAELAAGLQSAKTIVVA-----DVKSFLRADDAWGQIQL 432 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 RW + A A + G+EL + H Sbjct: 433 FRWFDLSLAAYLLNPEERNYAWDR----LRAMLFAGEELPDAVDEVHPDAQGMAALALMH 488 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 R + D +T + E L + + G +D+ Sbjct: 489 VLGPR--IKSAGLD-ELTANL----------EIPLIPVLADMEKAGITIDLDAFADFLTE 535 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266 V+ +L + + + R +++ T LF GL T +T VL Sbjct: 536 VNERINELTRVIHERAG-EPFNIRSSQQMATVLFDSLGLKPGGKTPKGALSTANSVLEKL 594 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + R + + L L + +N++GR+ L A+ TGR S Sbjct: 595 SGQHEIITDILEYR-KMEKLRSTYLEPLPKLVNANGRIHTNFNQL-ATATGRLSSSGPNL 652 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P + +R+C A EG +L AD + +E Sbjct: 653 QNIPIRGDQGKR-------------------------MRACFTAGEGLRLAAADYSQVEL 687 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA +G+ + AFE ED++ T A F+ PA VT D+R K + L Y G + Sbjct: 688 RVLAHFSGDPALVSAFEHDEDIHSRTAALLFDRDPADVTSDERRNAKTINFGLIYGMGPQ 747 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 + L + E+ + + F + E E G R+ Sbjct: 748 KLSRE-----LGIKINEAKEFIAKYFEKLDVLKEFYDSVVEQGREKGYVTTLSGR--RRL 800 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 ++ ++ + T+ G A K + + +N + GR Sbjct: 801 LPELHSTSPQI---LSQARRQAINTVIQGSAADIIKMAMIKV------ADNAEIKHLGGR 851 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 + + Sbjct: 852 LI----------------------------------------------LQIHDE------ 859 Query: 627 TVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ E P+ + +L M + + A +PLK + + + Sbjct: 860 -----LLVEGPEENIEEIGKLLQKDMQTVATLA--VPLKVDLGLGRNW 900 >gi|331267297|ref|YP_004326927.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5] gi|326683969|emb|CBZ01587.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5] Length = 877 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 98/667 (14%), Positives = 186/667 (27%), Gaps = 148/667 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKAC 83 ++ FA+ D + Q LKE LE V ++ VL Sbjct: 333 DLVGFAWSCGDK----LYTTDKLELLQEPILKEFLE-KTPLKV-----YDFKKAKVLLNR 382 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALK--AVGEALK---LSSQKMEEGKELIARFCKGET 138 L++ + + + + L + GK + + E Sbjct: 383 LGLNLQ-APAYDSRLAKYLLSTVENNEISTIANLYGQTYLVDDETFYGKGVKKAIPEREK 441 Query: 139 HECLYDRNKP----NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 R E+ + D+ ++ EQ L ++ + Sbjct: 442 FLEHLARKVAVLVETEPVLLEKLSEHGQLDL-----LY-------DMEQPLAFVLAKMEI 489 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--E 252 G V + +V +L QE+ L + ++L LF + GL L Sbjct: 490 AGIKVKKETLLEMQAENEVVIEQLTQEIYELAG-EEFNINSPKQLGVLLFEKLGLPLEYT 548 Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T+ +T VL + P ++ + R ++ + L + + DG++ Sbjct: 549 KKTKTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILDDGKIHTRYV 607 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 ++TGR S QN+P +R + Sbjct: 608 QD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFV 641 Query: 370 AS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKD 427 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + Sbjct: 642 PEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPN 701 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K + + Y + L ++ ++ E + +N+ + Sbjct: 702 DRRNAKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVR 756 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + + E R + + + + G A K + Sbjct: 757 EARDKGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQ 811 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 L + ML Sbjct: 812 LDKALVEGGYQTKML--------------------------------------------- 826 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 + IVL V P ++ L M +PL A+ Sbjct: 827 -------LQVHDE---IVLEV--------PKSELAAVKDLVKQTMEEAIQ--LSVPLIAD 866 Query: 667 GYESKRY 673 E + Sbjct: 867 ENEGATW 873 >gi|294628777|ref|ZP_06707337.1| DNA polymerase I [Streptomyces sp. e14] gi|292832110|gb|EFF90459.1| DNA polymerase I [Streptomyces sp. e14] Length = 889 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 94/645 (14%), Positives = 170/645 (26%), Gaps = 132/645 (20%) Query: 44 LWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +D + L + D V H++ VL + R T + A Sbjct: 357 WFDPAQLDETDETAFAAWLADADRPKVFHDAKGAMRVLAEH-GWSVDGVRM-DTALAAYL 414 Query: 103 NGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 AL A+ + EA L + Sbjct: 415 VKPGRRSFALDALSLEYLH------------RELAPAAAADGQLAFGADEAAEAEMLMIQ 462 Query: 160 -YCKGDV--TVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 D+ + + E L + G D A + Q+ Sbjct: 463 ARSILDLGEVFEGRLEEVGAADLLRDMELPTSALLARMERHGIAADRAHLEAMEQMFAGA 522 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK----KLT 270 + +E + + ++L+ LF E L T+T + + Sbjct: 523 VQQAVKEAHAAAGH-EFNLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLAAQTD 581 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 + + ++ V + L++ + +DGR+ T A+ TGR S QN+P Sbjct: 582 NELPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP 639 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVL 389 + +R + EG + L+ AD + IE RV+ Sbjct: 640 VRTDEGRA-------------------------IRRGFVVGEGFESLMTADYSQIELRVM 674 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++ + ++AF +GEDL+ T ++ F V + V + R K M L Y Sbjct: 675 AHLSEDAGLIEAFTSGEDLHTTAASQVFGVDRSAVDAEMRRKIKAMSYGLAYG-----LS 729 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 + LN+ ++ E + ++ R + G Sbjct: 730 AFGLSQQLNIEAAEARALMDAYFERFGGVRDYLRRAVDEARATGYTATLFGRRRYLP--- 786 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 +S + + G A K + + ++ Sbjct: 787 --DLNSDNRQRREAAERMALNAPIQGTAADIVKIAMLNVDRALRE--------------- 829 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 D L M+ L VH Sbjct: 830 -------------------------------------AD-LKSRML----------LQVH 841 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 DEIV E + + M+ PL + Sbjct: 842 DEIVLEIAPGERAATEEIVRREMSGAVQ--LRAPLDVSVGVGPDW 884 >gi|217031810|ref|ZP_03437313.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128] gi|216946462|gb|EEC25064.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128] Length = 383 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 75/491 (15%), Positives = 158/491 (32%), Gaps = 120/491 (24%) Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + +G+ +DV L Q E L++++ L + ++L L+ + GL Sbjct: 1 MGMEFQGFKIDVPYFKRLEQEFKDELKVLERQILDLIGVD-FNLNSPKQLGEVLYEKLGL 59 Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 ++ + +T ++ L P + R ++ L+ + D ++ T Sbjct: 60 P-KNKSHSTDEKNLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFI 117 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 G + TGR S QN+P S +R I Sbjct: 118 QTG-TATGRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFI 151 Query: 370 AS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 AS + L+ D + IE R+LA + ++ ++AF G D+++ T F + K++ Sbjct: 152 ASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEK 208 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R+I K + G+ Sbjct: 209 RSIAKSIN--------------FGLVYGMG------------------------------ 224 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + + + +A+ ++ + + N + + +T + Sbjct: 225 SKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNGMKEEILKTSK--------------- 269 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 GR V+ D Y+ Y + I Q + D Sbjct: 270 -----------AFTLLGRYRVF-DFNGVNDYVKGN---------YLREGVNAIFQGSASD 308 Query: 609 ILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLP 662 +L GM+ ++ ++L VHDE++ E + + + ++ + +P Sbjct: 309 LLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVP 367 Query: 663 LKAEGYESKRY 673 L+ + +KR+ Sbjct: 368 LETSAFIAKRW 378 >gi|302518444|ref|ZP_07270786.1| DNA polymerase I [Streptomyces sp. SPB78] gi|302427339|gb|EFK99154.1| DNA polymerase I [Streptomyces sp. SPB78] Length = 919 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 75/467 (16%), Positives = 141/467 (30%), Gaps = 60/467 (12%) Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWI-CTLVLARSNGLPS 107 D + + L + + V H + L F + + T + A Sbjct: 488 DEDDERAFADWLGDPERPKVMH----DAKGLMRVFGEHGMTVAGVAMDTALGAYLVKPGR 543 Query: 108 ---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 AL A+ G+EL+ ++ R Sbjct: 544 RTFALDALSLEY--------LGRELVPAQESDGQLA-FGADDETQARTLMVEARTILDLG 594 Query: 165 VTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + + E L + G D + + + +E Sbjct: 595 TALGARLPEVGAEGLLTDIELPTSALLARMERAGIAADREHLEEMERQFAGAVEQAVREA 654 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKK--LTPQAIQVF 277 + + ++L+ LF E L T+T T L+ + + Sbjct: 655 HAAVGH-EFNLGSPKQLQEVLFGELNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVLML 713 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R + ++ + L++++ DGR+ T A+ TGR S QN+P + Sbjct: 714 RHREQ-AKLRST-VEGLIKSIAPDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEGR 770 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQ 396 +R + EG + L+ AD + IE RV+A ++ ++ Sbjct: 771 A-------------------------IRRGFVVGEGYEALMTADYSQIELRVMAHLSEDE 805 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF +GEDL+ T FNV P V + R K M L Y + Sbjct: 806 GLIAAFTSGEDLHRTVAGYVFNVEPTAVDAEMRRKIKAMSYGLAYG-----LSAFGLSQQ 860 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 L + ++ E + ++ + E +G Sbjct: 861 LGIEAGEARALMDTYFERFGGVRDYLHRVVEEARATGYTATMLGRRR 907 >gi|119602944|gb|EAW82538.1| polymerase (DNA directed) nu, isoform CRA_a [Homo sapiens] Length = 891 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 93/643 (14%), Positives = 188/643 (29%), Gaps = 148/643 (23%) Query: 67 TIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPS---ALKAVGEALK 117 ++ N+ F R VL F D + A + + + E Sbjct: 315 PVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEKY- 372 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 +K K R E + +T ++ +L+ Sbjct: 373 --CEKSITVKVNSTYGNSSRNIVNQNVR------ENLKTLYR-------LTMDLCSKLKD 417 Query: 178 LSSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + L + + V+ + ++ +L+QE + Sbjct: 418 YGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAG-ERF 476 Query: 232 SSRCLEKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 +L+ LF + L L + +T + VL++ + L P + R Sbjct: 477 LITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYR 536 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L+ A G + T G + TGR S Q + + Sbjct: 537 Q-VHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPK 593 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +T P R+ ++S+G + AD + IE R+L ++G+ LK Sbjct: 594 NFKGKEDKILTISP----------RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLK 643 Query: 401 AFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 F+ +D++ T ++ +V QVT R K + A+ Y GA + +A+ G+ Sbjct: 644 LFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVY--GAGKER-LAACLGVP 700 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + +++ QK+ ++ Sbjct: 701 IQ-----------------------------------------EAAQFLESFLQKYKKIK 719 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + A Q + G + GR + + Sbjct: 720 DF---ARAAIAQCHQTGCVVSI-----------------------MGRRRPLPRIH---A 750 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDE 631 + Q R+ +VQ + D+ M++ +V +HDE Sbjct: 751 HDQQLRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDE 804 Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++ E D + L + +PLK + + Sbjct: 805 LLFEVEDPQIPECAALVR---RTMESLEQVPLKVSLSAGRSWG 844 >gi|312863577|ref|ZP_07723815.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396] gi|322516028|ref|ZP_08068965.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC 49124] gi|311101113|gb|EFQ59318.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396] gi|322125443|gb|EFX96789.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC 49124] Length = 879 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 97/663 (14%), Positives = 188/663 (28%), Gaps = 143/663 (21%) Query: 28 VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ F + + D + + + AL + V N ++ Sbjct: 325 FEILGDNYHTEPIIGFAWGNEKQIYASTDTDLLKSEAFQAAL-SKAV-----NI-YDFKR 377 Query: 79 --VLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIA 131 VL + +D+P + S + + L L + ++ GK Sbjct: 378 SKVLLSHLGIDLPTAN-FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVVYGKGAKR 436 Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191 + E + + A + E + E L E L + Sbjct: 437 AVPEKEVLLSHLAKKVKVLQVAKPVMLEKLAE--------HGQSELLFDMELPLANVLAK 488 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G V + + V KL QE+ + + ++L LF + GL L Sbjct: 489 MEIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMAG-EEFNINSPKQLGVILFEKMGLPL 547 Query: 252 --EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T+ +T VL + P ++ R ++ + L + + DG++ Sbjct: 548 EYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQ-ITKLQSTYVLGLQDYILEDGKIHT 606 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 ++TGR S QN+P +R Sbjct: 607 RYVQD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRK 640 Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424 + S E L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P V Sbjct: 641 AFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDV 700 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T + R K + + Y + L ++ ++ E + + + Sbjct: 701 TPNDRRNAKAVNFGIVYGIS-----DFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDN 755 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + + E R + V + + G A K Sbjct: 756 VVREAKDKGYVETLFHRRRELPDINSR--NFNVRNF---AERTAINSPIQGSAADILKIA 810 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 + L + ML Sbjct: 811 MINLDKALVEGGYKTKML------------------------------------------ 828 Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPL 663 + IVL V P+ + ++ M + A +PL Sbjct: 829 ----------LQVHDE---IVLEV--------PNDELVAMEALVKETMEAAVELA--VPL 865 Query: 664 KAE 666 A+ Sbjct: 866 IAD 868 >gi|303274755|ref|XP_003056693.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461045|gb|EEH58338.1| predicted protein [Micromonas pusilla CCMP1545] Length = 912 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 104/776 (13%), Positives = 193/776 (24%), Gaps = 202/776 (26%) Query: 44 LWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 D + K E+ D V HN F+R V++ + + T+ +AR Sbjct: 189 WVDTLKLGDEGWAIFKPYFESPDAKKVWHNYSFDRHVIENHGGIKLAGFA-ADTMHMARL 247 Query: 103 NGLPSALKAV--GEALKLSSQKMEE--------GKELIARFCKGETHECLYD-------- 144 L+ EAL + M E G+ELI + Sbjct: 248 WNSNRKLEGGYSLEALTSDPKVMSEAGEMFSEAGEELIRSKRGMKKIFGKPKIKKDGTPG 307 Query: 145 --------RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS---------------- 180 N E + EY D T + + LE Sbjct: 308 KTIELPPIDQIQNDPEQRETWIEYSALDAQATWFLRESLEAKLRGISCDACPRLSDKPTF 367 Query: 181 ------------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE-----LE 223 +E + + G VD + ++ + ++ Sbjct: 368 HECANLWEFYTTYLREFGEVLTDMESAGMFVDKKHLEGAEKQALADKKVAEDYFRRWAMK 427 Query: 224 SLTYGLVSSSRCLEKLKTWLFL--------------------------------ETGLHL 251 + +++ LF G Sbjct: 428 MCPAAEHMNVGSGIQVRQLLFAGARNKRPDKPGVEKEREFAMVSPEWTAWDEGGREGKAP 487 Query: 252 EDLTETTCQR----------------------VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + + T VL S A ++ + + + Sbjct: 488 KKGAKFTLHGVTKRDLAVPVYTATGLPAVSSVVLRSLAGRPGAAREIVDTWDALTDAEKT 547 Query: 290 KLNTLVEAMNSDGRLRGTLQ------------FLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + L ++ + G A+ S + P Q+ ++ Sbjct: 548 -NDALKKSCGAAYDAFGGGYDGAEACAAVDALNDVAAIDTLLSNFIIPLQSDNLRGKTGR 606 Query: 338 -------ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 + + L+ +R G LVVAD +E R+LA Sbjct: 607 VHTALNINTETGRLSARRPSLQNQPALEKDRYGIRKAFTCRPGNILVVADYGQLELRLLA 666 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 MAG +AFE G D + T + + + + L Y Sbjct: 667 HMAGCASMREAFEAGGDFHSRTAMGMYKEIREAMDEGKCL--------LEYG-------- 710 Query: 451 MASTTGLNLNTF---AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + G + + A + ++ NF + A + E Sbjct: 711 ---SEGYDEDEANRPALVKDMFASERRKAKVLNFSIAYGKTAHGLAKDFGVSTKEAEDTV 767 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 W V W E+ A + GK GR Sbjct: 768 NLWYSDRPEVRA-WQEVQHA--NATKLGKVSTLL-----------------------GRH 801 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 + + R +Q + DI MM + G Sbjct: 802 RNLPEASSRDEMRRQH---ALRASINTP------IQGGAADIAMLAMMQIHRCPRLKEIG 852 Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNP---SWAKGLPLKAEGYESKRY 673 Y++++ +HDE++ E P+ + +++ M + + L +G +K + Sbjct: 853 YELLMQIHDEVILEGPEEHKDEALALVKRHMENPFNDHENLCDVDLNVDGNYAKTW 908 >gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 901 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 99/637 (15%), Positives = 184/637 (28%), Gaps = 142/637 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 L+ L + H++ +L +++ T + A Sbjct: 382 LRAWLGDESRPKAVHDAK--GPMLALWAQGMELRGLTC-DTALAAY-------------- 424 Query: 116 LKLSSQKMEEGKELIARFCKGE--THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L + Q+ ++L+ + + E + E E RE+ Sbjct: 425 LAMPGQRTFLLEDLVRAYLQRELRGEAETGGQASLFDDEDDDTARELGLR-ALAVRELAD 483 Query: 174 RLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 LE L + + G D L + + Sbjct: 484 ALEAFLEPRGGTHLMREVELPLVTVLAELERAGIAADGDYFSGLEAEFGAAVKQAVEAAH 543 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK-----LTPQAIQVFN 278 + + ++L+ LF+ L T+T + + Sbjct: 544 AAVG-EQFNLGSPKQLQEILFVRLNLPKTKKTKTGYTTDADALAWLAAQTEHELPTIMLR 602 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R + ++ V + LV+ + DGR+ T + A+ TGR S QN+P + Sbjct: 603 HRDQ-AKLKVT-VEGLVKEIADDGRIHTTFNQIVAA-TGRLSSEKPNLQNIPIRTVEGRR 659 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQW 397 +R + G L+ AD + IE R++A ++G++ Sbjct: 660 -------------------------IRQGFVVGPGYETLLTADYSQIELRIMAHLSGDES 694 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + AFE+G D + TT AR F++ P QVT + RA K M L Y L Sbjct: 695 LIAAFESGHDFHKTTAARVFDIEPEQVTGEMRAKIKAMNYGLAYG-----LSDFGLAGQL 749 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 N+ EE+ +F + + + Sbjct: 750 NIPVQEAKALKEEYFEEFGGVRDFLNAIVAQARQDGYTETI------------------- 790 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +RR +P + + + R Sbjct: 791 ----------------------MGRRRYLPDLNSDNRQRREM---------------AER 813 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 LN + K+ VQ + + E G ++L VHDE+V E Sbjct: 814 MALNAPIQG---SAADIIKVAMLNVQ-SA---VKEA-----ALGSRMLLQVHDELVFEVA 861 Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + L M + ++ +PL+ + + Sbjct: 862 PGELETLRELVTDRMNAA--YSLRVPLEVSVGVGRTW 896 >gi|315612199|ref|ZP_07887114.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296] gi|315315760|gb|EFU63797.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296] Length = 889 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 92/665 (13%), Positives = 186/665 (27%), Gaps = 144/665 (21%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFN 85 ++ A+ D +L+ ++ + + + V ++ VL Sbjct: 345 DLVGLAWSCGD---KLYATDKLELLQEPIFKEFLEKTPLKV-----YDFKKAKVLLNRLG 396 Query: 86 LDIPIHRWICTLVLARSNGLPSALK--AVGEALK---LSSQKMEEGKELIARFCKGETHE 140 L++ + + + + L + GK + + E Sbjct: 397 LNLQ-APAFDSRLAKYLLSTVENNEISTIANLYGQTYLVDDETFYGKGVKKAIPEREKFL 455 Query: 141 CLYDRNKP----NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 R E+ + D+ ++ EQ L ++ + G Sbjct: 456 EHLARKVAVLVETEPVLLEKLSEHGQLDL-----LY-------DMEQPLAFVLAKMEIAG 503 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDL 254 V + +V +L QE+ L + ++L LF + GL L Sbjct: 504 IKVKKETLLEMQAENEVVIEQLTQEIYELAG-EEFNINSPKQLGVLLFEKLGLPLEYTKK 562 Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 T+ +T VL + P ++ + R ++ + L + + DG++ Sbjct: 563 TKTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILDDGKIHTRYVQD 621 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 ++TGR S QN+P +R + Sbjct: 622 -LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPE 655 Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQR 429 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 656 WEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDR 715 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y + L ++ ++ E + +N+ + Sbjct: 716 RNAKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREA 770 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + + E R + + + + G A K + L Sbjct: 771 RDKGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQLD 825 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + ML Sbjct: 826 KALVEGGYQTKML----------------------------------------------- 838 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGY 668 + IVL V P ++ L M +PL A+ Sbjct: 839 -----LQVHDE---IVLEV--------PKSELAAVKALVKQTMEEAIQ--LSVPLIADEN 880 Query: 669 ESKRY 673 E + Sbjct: 881 EGATW 885 >gi|320529716|ref|ZP_08030795.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] gi|320138077|gb|EFW29980.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] Length = 893 Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats. Identities = 90/606 (14%), Positives = 168/606 (27%), Gaps = 137/606 (22%) Query: 90 IHRWICTLVLARSNGLP---SALKAVGEAL--KLSSQKMEEGKELIARFCKGETHECLYD 144 + +L A +LS+ + E + L A + L++ Sbjct: 399 GAEVFDLALADYLLRPEERQRSLDRAASAYLDELSAPQTAEDRTLSAVYSHLANGAPLHN 458 Query: 145 RNKPNHREAWRLFGEY-----CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 + Y D +T E++ +E L + + G V Sbjct: 459 EQIAFYEVILA-AQLYGPMSAALADANLT-ELYGTVE------LPLVPILAAMERTGVAV 510 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256 + A + +++Q++ +L + ++L LF GL + + Sbjct: 511 NRAALGRALAAANARIAEIEQDIYALAGT-EFNISSPKQLGEVLFDRLGLTSPKMKKTKT 569 Query: 257 --TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGA 313 +T VL + P +V R S+ L + + D GR+ + Sbjct: 570 GYSTNAEVLEEMRAAHPVVDRVLTYR-MWSKIRSTYLEGIGALIRPDTGRVHTSFNQ-TV 627 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGR S QN+P + VR+ EG Sbjct: 628 TATGRLSSSDPNLQNIPVRTEEGRA-------------------------VRALFEPGEG 662 Query: 374 K-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 L+ AD + IE R+LA M+G++ + AF G+D++ T + F V A+VT QR Sbjct: 663 YDALLSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTASEVFGVPLAEVTSAQRRSA 722 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y + L + E + F + + + Sbjct: 723 KAVNFGIVYG-----LSDYGLSQDLGIPRKEAAGYIERYFERYHGVRAFLDRVVADAHTN 777 Query: 493 AIEDLFIGTACERVKKAWRQKHSRV--SELWNE--LHQAFEQTIENGKAIIARKRRDVPL 548 G R+ + + T G A K + Sbjct: 778 GFVTTLYGR---------RRALPAINSRNFMQRSNAERMAMNTPIQGTAADLIKIAMIRA 828 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + +L Sbjct: 829 DAALRAAGVKSRIL---------------------------------------------- 842 Query: 609 ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEG 667 + +VL E+V + + +L M+ A +PL + Sbjct: 843 ------LQVHDE---LVL----EVV----NDEIAQVTELLTAAMSGAAQLA--VPLAVDV 883 Query: 668 YESKRY 673 + K + Sbjct: 884 HTGKNW 889 >gi|297672987|ref|XP_002814560.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Pongo abelii] Length = 1585 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 77/541 (14%), Positives = 157/541 (29%), Gaps = 126/541 (23%) Query: 167 VTREIFKRLEPLSSKEQ-------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 +T +F ++ Q L + + V+ + ++ +L+ Sbjct: 1091 LTLILFLPIKQGYGLWQLFCTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELE 1150 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKK 268 QE + +L+ LF + L L + +T + VL++ + Sbjct: 1151 QEAHFVAG-EPFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRD 1209 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 P + R + ++ L+ A G + T G + TGR S Q Sbjct: 1210 FHPLPKIILEYRQ-VHKIKSTFVDGLL-ACTKKGSISSTWNQTG-TVTGRLSAKHPNIQG 1266 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 + + ++T P R+ ++S+G + AD + IE R+ Sbjct: 1267 ISKHPIQITTPKNFKGKEDKTLTISP----------RAMFVSSKGHTFLAADFSQIELRI 1316 Query: 389 LAWMAGEQWKL--KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 LA ++G+ L +D++ T ++ +V QVT R K + A+ Y Sbjct: 1317 LAHLSGDPELLKLFQEAERDDVFSTLTSQWKDVPMEQVTHADREQTKKVVYAVVY----- 1371 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 A + Sbjct: 1372 ---------------------------------------GAGKERLAACLGVPVQEAAQF 1392 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 +++ QK+ ++ + A Q + G + GR Sbjct: 1393 LESFLQKYKKIKDF---ARAAIAQCHQTGYVVSI-----------------------MGR 1426 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TK 619 + ++ Q R+ +VQ + D+ M++ Sbjct: 1427 RRPLPRIH---AHDQQLRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASRT 1477 Query: 620 AGYDIVLTVHDEIVCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRY 673 +V +HDE++ E D A+++ M +PLK + + Sbjct: 1478 LTARLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSW 1537 Query: 674 R 674 Sbjct: 1538 G 1538 >gi|168066269|ref|XP_001785063.1| predicted protein [Physcomitrella patens subsp. patens] gi|162663356|gb|EDQ50124.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1683 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 86/744 (11%), Positives = 183/744 (24%), Gaps = 198/744 (26%) Query: 28 VCVILFAFGFDDHPVELWDC---------------VHDPVMPQVLKEALENT-------- 64 V+ A + D PV + + V+ + + +L + Sbjct: 1033 FEVMGVAICWKDSPVYYVNLSIVHKSFQHATNPNCGNKEVIIREVNSSLIESQTRWRHVG 1092 Query: 65 ------DVTIVAHNSYFERTVLKACFNLDIPIHR-------------------------- 92 V ++ + + VL L +P R Sbjct: 1093 TMLSKTGVRKISWDLKIQLQVLNN-PGLHVPSARQTTEHERGVPDVKAREGEVVALPSIR 1151 Query: 93 ----WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 I T V A L Q+++ K L + Sbjct: 1152 VQMPCIDTRVAAWLLWP----DEESTRLLSLEQEVK--KRLPGEIAAAAGRAGRWANQMG 1205 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYC 198 C V + L E L + + Sbjct: 1206 CV------AHNGCCRRVAQIWVLHCAFWKLLVAEGLHEALLQLEMPLVRVLADMETWSLG 1259 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----D 253 +D+ + + + +L+ + E L S ++ L+ L + Sbjct: 1260 LDMRVCRKAQSHLHCKLRELEAQGEKLAGMS-FSLSAPAEVAHVLYRHLKLPVPPGCKGK 1318 Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK--LNTLVEAMNS----------- 300 +T ++ L + P A + +R + + ++ Sbjct: 1319 HHPSTDKQALEFLRNHHPIADIIKEHRSLSKLLQSTLGSIIAWAKSPEPLFSSQERSSRG 1378 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 + ++ TGR S Q + + I + ++ Sbjct: 1379 EIFSIAGHWLQTSTATGRLSMEDPNLQCVEH------AVSFTIEGGRSLDGDQEKANNVV 1432 Query: 361 SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA-FETGEDLYVTTYARSFN 418 R + S EG L+ AD + IE R++A +G+ + DL+ A+ Sbjct: 1433 EVNARQAFVPSQEGWILLSADYSQIELRLMAHFSGDPSLVSLLSHPTGDLFRVLAAQWTG 1492 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 + +V+ QR K + + Y G + Sbjct: 1493 LPMCEVSDKQRERTKRLVYGILYGMGVNTLAEHLE------------------------- 1527 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 + + + ++ V+ L A + + G Sbjct: 1528 -------------------CPVAEAQVMLERFKGTFPLVTTW---LSHAVDSCRQKGYIT 1565 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 SGR + T + + + Sbjct: 1566 TL-----------------------SGRKRYLDKIN---------TGKWGEQAKAERQAV 1593 Query: 599 ENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCETPDTDEFNASMLYH-L 650 +I Q + D++ M+ A ++L +HDE++ E + + + Sbjct: 1594 NSICQGSAADLIKLAMIKVHDAISSSHQGSCRLLLQIHDELLLEVDKRVLKHVAQILRSS 1653 Query: 651 MTSNPSWAKGLPLKAEGYESKRYR 674 M + +PL+ + + Sbjct: 1654 MEGAIT--LRVPLRTKLQVGTSWG 1675 >gi|323126201|gb|ADX30666.1| gp44 [Mycobacterium phage Wonder] Length = 604 Score = 214 bits (544), Expect = 6e-53, Method: Composition-based stats. Identities = 107/674 (15%), Positives = 210/674 (31%), Gaps = 157/674 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L +D ET G+ Y++ L FG + + P + ++AL N Sbjct: 38 LGLDTETT--------GLDIYSDGFRCRLVQFGTPN-EAWVIPVELGPRYEEEARQALRN 88 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKAVG 113 V HN+ ++ V++ + + + T +LA L+ + Sbjct: 89 VK-GFVLHNASYDLQVIERTLGIPMEDMWPKVTDTKILAHLVDPRPFKEGGIGHKLEELV 147 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + E K L+A + + K + + Y D + + + Sbjct: 148 KHY-IDAPVAENVKTLMATLAREYKTTKAHIWTKVEWTNPY--YQLYAGMDPILAARLLQ 204 Query: 174 RLEPLSS--------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +L PL E +L + + RG+ +DV + L++ + ++ + + L Sbjct: 205 KLIPLVPSVSQDLVPYEHKLAEICSYMERRGFLLDVEYSEKLSEDMLRKQDYWASKADIL 264 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDL---TETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + + ++ L E + +L K + + + Sbjct: 265 YG--LENVNSPIQVAEALMRRGVKITERTEGGQPKVDKVLLDRLIKEGDPLAEAISEAKK 322 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + + +++ +S R ++ L A RT R S P Q LP Sbjct: 323 WGKWEKTWVRKFLDSRDSKDRCHASINPLQA-RTARMSITGIPAQTLPSGD--------- 372 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 VR C +A EG+ + D E RVLA ++G++ ++AF Sbjct: 373 -------------------WLVRRCFLADEGELMASVDYQAQELRVLAALSGDRTMIQAF 413 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G DL++ A Sbjct: 414 RDGADLHL-----------------MTARAAWP--------------------------- 429 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + +S ++ NF R A + A ++V + + + V +L Sbjct: 430 DREITKDSPERKYAKTVNFGRVYGGGAKTVAEQTGLDMEAAKQVVDGFDRAYPGVQKLSR 489 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 +L ++ P GR L V +R+Y Sbjct: 490 KLQMEA--------------------------SQKGHIITPVGRRLP---VDPSRAY--- 517 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETP-DT 639 ++Q+ SRD+ ++ +AG+ + L +HDEI+ P D Sbjct: 518 -------------SALNYLIQSSSRDVTGRALIRLHEAGFTRYLRLPIHDEILASVPADK 564 Query: 640 DEFNASMLYHLMTS 653 ++ A + LM Sbjct: 565 AQWGAQEIARLMAE 578 >gi|99035970|ref|ZP_01315014.1| hypothetical protein Wendoof_01000150 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 354 Score = 213 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 63/417 (15%), Positives = 116/417 (27%), Gaps = 111/417 (26%) Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL + ++ + N S+ + L++ ++ T A+ TGR S Sbjct: 26 EVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATATGRLS 85 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380 QN+P S +R IA +G K++ AD Sbjct: 86 SSNPNLQNIPIRSEEGN-------------------------LIRQAFIAPKGHKIISAD 120 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA +A +AF G+D++ T + F V ++ + R K + Sbjct: 121 YSQIELRLLAHVANVAAFKEAFANGQDIHEITARQVFGV--QEIDEQLRRKAKSINF--- 175 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 G++ A Sbjct: 176 -----------GIIYGISPFGLAKR------------------------------LGITI 194 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + + +A +G Sbjct: 195 AEAAEYINYYFSCYPEIKAYM---EKAVSIARLHGYVETL-------------------- 231 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-TK 619 GR RD+ N Y+ R Q + DI+ + + Sbjct: 232 ---FGRRCFVRDINNTIPYIRQF---AERAAINAPL------QGTAADIIKRATIQLFDQ 279 Query: 620 AGY-DIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 I+L VHDE++ E + + A ++ +M + +PL+ E + Sbjct: 280 LKVGKIILQVHDELLVEVEDEKVQETAKLIKDIMENAIE--ISIPLEVEIKIGDNWG 334 >gi|295839501|ref|ZP_06826434.1| DNA polymerase I [Streptomyces sp. SPB74] gi|295827509|gb|EDY46324.2| DNA polymerase I [Streptomyces sp. SPB74] Length = 918 Score = 213 bits (542), Expect = 9e-53, Method: Composition-based stats. Identities = 86/627 (13%), Positives = 167/627 (26%), Gaps = 129/627 (20%) Query: 60 ALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRW-ICTLVLARSNGLPS---ALKAVGE 114 L + + + H + L F + + + T + A AL A+ Sbjct: 403 WLGDPERPKIMH----DAKGLMRVFGEHGMSVAGVSMDTALGAYLVKPGRRTFALGALSL 458 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 G+EL+ ++ R +T + + Sbjct: 459 EY--------LGRELVPAQESDGQLA-FGADDESQARTLMVEARTILDLGTALTARLPEV 509 Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L + G D A + + + +E + + Sbjct: 510 GAEGLLTDIELPTSALLARMERAGIKADRAHLEEMERQFAGAVEQAVREAHAAVGH-EFN 568 Query: 233 SRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKL-TPQAIQVFNNRMRASRSAV 288 ++L+ LF E L T+T T L+ + + ++ Sbjct: 569 LGSPKQLQEVLFGELNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVIMLRHREQAKLRS 628 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + L++++ DGR+ T A+ TGR S QN+P + Sbjct: 629 T-VEGLIKSIAPDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEGRA---------- 676 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R + EG + L+ AD + IE RV+A ++ ++ + AF +GED Sbjct: 677 ---------------IRRGFVVGEGFEALMTADYSQIELRVMAHLSEDEGLIAAFTSGED 721 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 L+ T F V PA V + R K M L Y + L + Sbjct: 722 LHRTVAGYVFGVEPAAVDAEMRRKIKAMSYGLAYG-----LSAFGLSQQLGIEAGEARAL 776 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 ++ E + ++ + E +G +S + + Sbjct: 777 MDTYFERFGGVRDYLHRVVEEARATGYTATMLGRRRYLP-----DLNSDNRQRREAAERM 831 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 G A K + + ++ Sbjct: 832 ALNAPIQGTAADIVKIAMLNVDRALRE--------------------------------- 858 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML 647 ++ + ++ DEIV E + + Sbjct: 859 -------------------AELTSRMLLQVH-----------DEIVLELAPGERAPVEEI 888 Query: 648 -YHLMTSNPSWAKGLPLKAEGYESKRY 673 M + PL + + Sbjct: 889 LRREMAAAAE--LRAPLTVSVGVGRDW 913 >gi|159146215|gb|ABW90571.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 134/367 (36%), Positives = 200/367 (54%), Gaps = 9/367 (2%) Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + L + Sbjct: 5 ELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQHI 64 Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 G+ L D+ +T QR ++ + P ++ + R+++ ++ K L++++++DGR Sbjct: 65 ASAFGITLPDMQASTLQRRIND-PDIPPALRELLSVRLQSCTTSTSKYKALLKSVSADGR 123 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIIS 361 LRGT QF GASRTGRW+G VF P NLPRP+ +D I L D +Q+ S Sbjct: 124 LRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTS 183 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YVTTYARS 416 +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+ AF ++ Y YAR+ Sbjct: 184 SALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARA 243 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 FN+ P VTKDQR IGKVMEL LGY GG AF A GL+L+ A N P Sbjct: 244 FNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPPGVKR 303 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 +A + + E + + + T C+ +K+ WR H + W ++ A +Q I++ Sbjct: 304 EAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSPG 362 Query: 537 AIIARKR 543 ++ Sbjct: 363 IAFKCRK 369 >gi|306826139|ref|ZP_07459474.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431615|gb|EFM34596.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 889 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 97/667 (14%), Positives = 187/667 (28%), Gaps = 148/667 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKAC 83 ++ FA+ D + Q LK LE V ++ VL Sbjct: 345 DLVGFAWSCGDK----LYATDKLDLLQEPILKNFLE-KTPLKV-----YDFKKAKVLLNR 394 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALK--AVGEALKLSSQKMEE------GKELIARFCK 135 +L++ + + + + + +E K+ I K Sbjct: 395 LDLNLQ-APAFDSRLAKYLLSTVENNEISTIASLYGQTYMVDDETFYGKGVKKAIPEREK 453 Query: 136 GETHEC-LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 H E+ + D+ ++ EQ L ++ + Sbjct: 454 FLEHLARKVAVLVETEPVLIEKLSEHGQLDL-----LY-------DMEQPLAFVLAKMEI 501 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--E 252 G V + +V +L QE+ L + ++L LF + GL L Sbjct: 502 AGIKVKKETLLEMQAENEVVIEQLTQEIYEL-ADEEFNINSPKQLGVLLFEKLGLPLEYT 560 Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T+ +T VL + P ++ + R ++ + +L + + DG++ Sbjct: 561 KKTKTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVVSLQDWILDDGKIHTRYV 619 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 ++TGR S QN+P +R + Sbjct: 620 QD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFV 653 Query: 370 AS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKD 427 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + Sbjct: 654 PEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPN 713 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K + + Y L ++ ++ E + +N+ + Sbjct: 714 DRRNAKAVNFGVVYGIS-----DFGLANNLGISRKKAKAYIDTYFERFPGIKNYMEEVVR 768 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + + E R + + + + G A K + Sbjct: 769 EARDKGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQ 823 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 L + ML Sbjct: 824 LDKALVEGGYQTKML--------------------------------------------- 838 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 + IVL V P ++ +L M +PL A+ Sbjct: 839 -------LQVHDE---IVLEV--------PKSELAAVKVLVKQTMEEAIQ--LSVPLIAD 878 Query: 667 GYESKRY 673 E + Sbjct: 879 ENEGATW 885 >gi|317508193|ref|ZP_07965875.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974] gi|316253522|gb|EFV12910.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974] Length = 602 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 100/675 (14%), Positives = 207/675 (30%), Gaps = 159/675 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L +D ET G+ Y++ FG + V + AL Sbjct: 37 ILGLDSETT--------GLDIYSKGFRCRTVQFG-SPEEGWVIPVERGAVFREAAIAALR 87 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKAV 112 D V HN+ ++ V C + + + + T +LA +L+ + Sbjct: 88 AADR-FVLHNASYDLQVFDKCLGVPMEELWPKVVDTKILAHLVDPRGRKEGGTGHSLEEL 146 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 L + + K L+ K E K + Y D + + Sbjct: 147 TRHY-LDADVADTVKTLMTDLAKEEKTTKANVWKK--VSLDNPRYQLYAGMDPILACRLR 203 Query: 173 KRLEPLSS--------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 ++L PL E++L + + G+ +DV L+ + ++ + E+ Sbjct: 204 QKLSPLVPVSARGLVGYERDLAEVCSVMERTGFLLDVDYTRKLSTRLRLD-ESVASEIAL 262 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL---HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ L + +L+ K + + + Sbjct: 263 SYGCE--NVNSTDQVADVLEQMGAWIPGRTPTGKKQVNDTLLAQLAKDGNEFARSVIDAK 320 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 +A + ++ ++ ++ DGR ++ L A RT R S P Q LP Sbjct: 321 KAGKWRKTWVDRFLQTVDPDGRCHASINPLQA-RTARMSITEIPAQTLPAGD-------- 371 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R C +A EG+ + D E RVLA ++G+ ++A Sbjct: 372 --------------------WMIRRCFLADEGELIASVDYQAQELRVLAALSGDPTMIRA 411 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G+DL++ T +F + + Sbjct: 412 FAEGQDLHLLTARAAFGDHITKDDPE---------------------------------- 437 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 ++ NF R + + A ++V + + + V L Sbjct: 438 -----------RKYAKVVNFGRVYGGGAKTVSEQTGLGFMAAKQVVDGFDKAYPGVRVLS 486 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 ++L + ++ + ++ P+GR L Sbjct: 487 HKLQEEAVKSGQ--------------------------IVTPTGRVLPVDQDR------- 513 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCETPDT 639 ++Q+ SRD+ + ++ +AG+ ++ L +HDE++ P Sbjct: 514 ------------AYAALNYLIQSTSRDVTGKALIRLHRAGFGPNLRLPIHDEVLASVPAA 561 Query: 640 DEFN-ASMLYHLMTS 653 A+ + +M Sbjct: 562 KARWGANRIAEIMRE 576 >gi|159146211|gb|ABW90569.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 212 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 132/367 (35%), Positives = 199/367 (54%), Gaps = 9/367 (2%) Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + L + Sbjct: 5 ELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQHI 64 Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 G+ L D+ +T QR ++ + P ++ + R+++ ++ K L++++++DGR Sbjct: 65 ASAFGITLPDMQASTLQRRIND-PDIPPALRELLSVRLQSCTTSTSKYKALLKSVSADGR 123 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIIS 361 LRGT QF GASRTGRW+G VF P NLPRP+ +D I L D +Q+ S Sbjct: 124 LRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTS 183 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YVTTYARS 416 +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+ AF ++ Y YAR+ Sbjct: 184 SALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARA 243 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 FN+ P VTK+QR IGKVMEL LGY GG AF A GL+L+ A N Sbjct: 244 FNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPLGVKR 303 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 +A + + E + + + T C+ +K+ WR H + W ++ A +Q I++ Sbjct: 304 EAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSPG 362 Query: 537 AIIARKR 543 ++ Sbjct: 363 IAFKCRK 369 >gi|295098757|emb|CBK87846.1| DNA polymerase I [Eubacterium cylindroides T2-87] Length = 687 Score = 212 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 79/497 (15%), Positives = 152/497 (30%), Gaps = 104/497 (20%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E+ L + + ++G +D + + D L Q++ + +V + + Sbjct: 290 YENIEKPLVRILFEMENQGIHIDENVLDEIGAKTDTILESLTQQIHEM-AHMVFNINSPK 348 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L L+ E L +T VL K P + + R + S+ + L + Sbjct: 349 QLAGVLYDELNLKGGGKKRSTSAEVLEKLKGSHPIIDVLLDYR-KYSKIKSTYIEGLKKH 407 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 + D ++ ++TGR S QN+ E Sbjct: 408 IQQDSKIHTCFNQAM-TQTGRLSSSDPNLQNISVRDEQGRE------------------- 447 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R +A +G KL+ AD + IE R+LA MA E ++AF+ G D++ T + F Sbjct: 448 ------IRKAFVAQKGYKLLSADYSQIELRMLAHMANETHMIEAFKEGADIHNRTASHIF 501 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 +V+ VT D R + K + + Y + + L ++ + + + Sbjct: 502 HVSQEDVTPDMRRVAKTVNFGIVYGQT-----EFGLSQQLKISRKEAGEFMETYFASYPN 556 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 F + + E+ + R+ K+ E +A G A Sbjct: 557 IHQFMNQLIDFCKENGYVETMFHR--RRMIPEINDKNFMTREFGK---RAAMNAPIQGSA 611 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 K + + K+KN ML Sbjct: 612 ADLIKIAMIRVDQAMKEKNVKSKML----------------------------------- 636 Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS 656 + +V PD + +++ M Sbjct: 637 -----------------LQIHDELIFLV-----------PDDELEVMQALVKEAMEQAME 668 Query: 657 WAKGLPLKAEGYESKRY 673 +PLKA + + Sbjct: 669 --LKVPLKASINFGQSW 683 >gi|333027886|ref|ZP_08455950.1| putative DNA polymerase I [Streptomyces sp. Tu6071] gi|332747738|gb|EGJ78179.1| putative DNA polymerase I [Streptomyces sp. Tu6071] Length = 914 Score = 212 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 89/638 (13%), Positives = 172/638 (26%), Gaps = 131/638 (20%) Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWI-CTLVLARSNGLPS 107 D + + L + + V H + L F + + T + A Sbjct: 389 DEDDERAFADWLGDPERPKVMH----DAKGLMRVFGEHGMTVAGVAMDTALSAYLVKPGR 444 Query: 108 ---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 AL A+ G+EL+ ++ R Sbjct: 445 RTFALDALSLEY--------LGRELVPAQESDGQLA-FGADDETQARTLMVEARTILDLG 495 Query: 165 VTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + + E L + G D A + + + +E Sbjct: 496 TALGARLPEVGAEGLLTDIELPTSALLARMERAGIAADRAHLEEMERQFAGAVEQAVREA 555 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKK--LTPQAIQVF 277 + + ++L+ LF E L T+T T L+ + + Sbjct: 556 HAAVGH-EFNLGSPKQLQEVLFGELNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVLML 614 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R + ++ + L++++ DGR+ T A+ TGR S QN+P + Sbjct: 615 RHREQ-AKLRST-VEGLIKSIAPDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEGR 671 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQ 396 +R + EG + L+ AD + IE RV+A ++ ++ Sbjct: 672 A-------------------------IRRGFVVGEGYEALMTADYSQIELRVMAHLSEDE 706 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF +GEDL+ T FNV PA V + R K M L Y + Sbjct: 707 GLIAAFTSGEDLHRTVAGYVFNVEPAAVDAEMRRKIKAMSYGLAYG-----LSAFGLSQQ 761 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L + ++ E + ++ + E +G +S Sbjct: 762 LGIEAGEARALMDTYFERFGGVRDYLHRVVEEARATGYTATMLGRRRYLP-----DLNSD 816 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + G A K + + ++ Sbjct: 817 NRQRREAAERMALNAPIQGTAADIVKIAMLGVDRALRE---------------------- 854 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 ++ + ++ DEIV E Sbjct: 855 ------------------------------AELTSRMLLQVH-----------DEIVLEL 873 Query: 637 PDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + PL + + Sbjct: 874 APGEREPVEEILRREMAAAAQ--LRAPLTVSVGVGRDW 909 >gi|159146203|gb|ABW90565.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 212 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 134/367 (36%), Positives = 202/367 (55%), Gaps = 9/367 (2%) Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + L + Sbjct: 5 ELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQHI 64 Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 G+ L D+ +T QR ++ + P ++ + R+++ ++ K L++++++DGR Sbjct: 65 ASAFGITLPDMQASTLQRRIND-PDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADGR 123 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIIS 361 LRGT QF GASRTGRW+G VF P NLPRP+ +D I L D +Q+ S Sbjct: 124 LRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTS 183 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YVTTYARS 416 +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+KAF ++ Y YAR+ Sbjct: 184 SALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARA 243 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 FN+ P VTKDQR IGKVMEL LGY GG AF A GL+L+ A + P Sbjct: 244 FNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPGVKR 303 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 +A ++ + E + + + T C+ +K+ WR H + W ++ A +Q I++ Sbjct: 304 EATSWYQKSVEKDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSPG 362 Query: 537 AIIARKR 543 ++ Sbjct: 363 IAFKCRK 369 >gi|322375177|ref|ZP_08049691.1| DNA polymerase I [Streptococcus sp. C300] gi|321280677|gb|EFX57716.1| DNA polymerase I [Streptococcus sp. C300] Length = 889 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 98/667 (14%), Positives = 190/667 (28%), Gaps = 148/667 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKAC 83 ++ FA+ D + Q LKE LE V ++ VL Sbjct: 345 DLVGFAWSCGDK----LYATDKLELLQEPILKEFLE-KTPLKV-----YDFKKAKVLLNR 394 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALK--AVGEALK---LSSQKMEEGKELIARFCKGET 138 +L++ + + + + L+ ++ GK + + E Sbjct: 395 LDLNLQ-APAFDSRLAKYLLSTVENNEISTIANLYGQTYLADDEIFYGKGVKKAIPEREK 453 Query: 139 HECLYDRNKP----NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 R E+ + D+ ++ EQ L ++ + Sbjct: 454 FLEHLARKVAVLVETEPVLLEKLSEHGQLDL-----LY-------DMEQPLAFVLAKMEI 501 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--E 252 G V + ++ KL QE+ L + ++L LF + GL L Sbjct: 502 AGIKVKKETLLEMQAENELIIEKLTQEIYELAG-EKFNINSPKQLGVLLFEKLGLPLEYT 560 Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T+ +T VL + P ++ + R ++ + L + + DG++ Sbjct: 561 KKTKTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILDDGKIHTRYV 619 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 ++TGR S QN+P +R + Sbjct: 620 QD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFV 653 Query: 370 AS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKD 427 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + Sbjct: 654 PEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPN 713 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K + + Y + L ++ ++ E + +N+ + Sbjct: 714 DRRNAKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVR 768 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + + E R + + + + G A K + Sbjct: 769 EARDKGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQ 823 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 L + ML Sbjct: 824 LDKALVEGGYQTKML--------------------------------------------- 838 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 + IVL V P ++ +L M +PL A+ Sbjct: 839 -------LQVHDE---IVLEV--------PKSELAAIKVLVKQTMEEAIQ--LSVPLIAD 878 Query: 667 GYESKRY 673 E + Sbjct: 879 ENEGATW 885 >gi|318056313|ref|ZP_07975036.1| DNA polymerase I [Streptomyces sp. SA3_actG] gi|318075964|ref|ZP_07983296.1| DNA polymerase I [Streptomyces sp. SA3_actF] Length = 914 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 86/638 (13%), Positives = 169/638 (26%), Gaps = 131/638 (20%) Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWI-CTLVLARSNGLPS 107 D + + L + + V H + L F + + T + A Sbjct: 389 DEDDERAFADWLGDPERPKVMH----DAKGLMRVFGEHGMTVAGVAMDTALGAYLVKPGR 444 Query: 108 ---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 AL A+ G+EL+ ++ R Sbjct: 445 RTFALDALSLEY--------LGRELVPAQESDGQLA-FGADDETQARTLMVEARTILDLG 495 Query: 165 VTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + + E L + G D + + + +E Sbjct: 496 TALGARLPEVGAEGLLTDIELPTSALLARMERAGIAADREHLEEMERQFAGAVEQAVREA 555 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKK--LTPQAIQVF 277 + + ++L+ LF L T+T T L+ + + Sbjct: 556 HAAVGH-EFNLGSPKQLQEVLFGGLNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVLML 614 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R + ++ + L++++ DGR+ T A+ TGR S QN+P + Sbjct: 615 RHREQ-AKLRST-VEGLIKSIAPDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEGR 671 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQ 396 +R + EG + L+ AD + IE RV+A ++ ++ Sbjct: 672 A-------------------------IRRGFVVGEGYEALMTADYSQIELRVMAHLSEDE 706 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF +GEDL+ T FNV P V + R K M L Y + Sbjct: 707 GLIAAFTSGEDLHRTVAGYVFNVEPTAVDAEMRRKIKAMSYGLAYG-----LSAFGLSQQ 761 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L + ++ E + ++ + E +G +S Sbjct: 762 LGIEAGEARALMDTYFERFGGVRDYLHRVVEEARATGYTATMLGRRRYLP-----DLNSD 816 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + G A K + + ++ Sbjct: 817 NRQRREAAERMALNAPIQGTAADIVKIAMLGVDRALRE---------------------- 854 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 ++ + ++ DEIV E Sbjct: 855 ------------------------------AELTSRMLLQVH-----------DEIVLEL 873 Query: 637 PDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 + + M + PL + + Sbjct: 874 APGEREPVEEILRREMAAAAQ--LRAPLTVSVGVGRDW 909 >gi|261337293|ref|ZP_05965177.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093] gi|270277662|gb|EFA23516.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093] Length = 960 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 83/617 (13%), Positives = 165/617 (26%), Gaps = 134/617 (21%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 + L++PI T + + + E I Sbjct: 452 MAQSAGLNVPI-PLFDTKLAGYLADPDYT--------GHTIDEYAEHFLRIDVPAVQTQA 502 Query: 140 ECLYDRNKPNHR---EAWRLFGEYCKGDVTVTREIFKRLEPLSSK------EQELWYLDQ 190 + D + + + + G + R + + L+ E + + Sbjct: 503 QGTLDFDNMDDETPTQDDKDLGLQAALVSAMARHLARELQQREQYALLRCIELPVSVVLY 562 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G VD +L E +++ + G + +K+ LF + GL Sbjct: 563 RMEQEGAAVDRMRLDSLLATFAEESGRME-RMAWDAAGSEFNLSSPKKIGKVLFEDMGLT 621 Query: 251 LEDLTET-----------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 T++ T + +R + + TL++A+N Sbjct: 622 PLRKTKSGHYTTNAATLTTLYANAEEGSAAYVFLGAILRHRGVNKLQQI--VQTLIDAIN 679 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 T + TGR S QN+P + + Sbjct: 680 RTDGHIHTTFEQTVAATGRLSSTDPNLQNIPNRNAEGRDT-------------------- 719 Query: 360 ISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 RS I +EG L+ AD + +E R++A +G++ + AF++G D + + + Sbjct: 720 -----RSAFIPAEGFDALLSADYSQVELRLMADFSGDEALIDAFKSGADFHRYVASLVYG 774 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 + ++ DQR+ K M L Y + L + + Sbjct: 775 IPVDDISGDQRSHVKAMSYGLAYG-----LSSYGLSQQLGITPKEADALKQQYFRTFGKV 829 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 + + E + G R+ + + +A E+ Sbjct: 830 HEYLESLVATARERGYTETMFGR---------RRYFPALRSPNRMVREAAERAA------ 874 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 L G+ + + R Sbjct: 875 -----------------------------LNAPIQGSAADIMKMAMIRAERALRS----- 900 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSW 657 Q IVL +HDE+V + P E +++ M Sbjct: 901 ----QG---------------MRSRIVLQIHDELVVQLAPGEHESATALVKDAMEHAVQL 941 Query: 658 AKGLPLKAEGYESKRYR 674 A +PL ++ Sbjct: 942 A--VPLDVSTGIGTDWQ 956 >gi|320449752|ref|YP_004201848.1| DNA polymerase I [Thermus scotoductus SA-01] gi|320149921|gb|ADW21299.1| DNA polymerase I [Thermus scotoductus SA-01] Length = 682 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 113/690 (16%), Positives = 194/690 (28%), Gaps = 185/690 (26%) Query: 1 MAT--LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L +D ET G+ + ++ A V ++D P +V Sbjct: 145 MRQPVLGVDLETT--------GLDPHTSRPRLLSLAM---PGAVVVFDLFGVP--LEVFY 191 Query: 59 EAL-ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 +V HN F+ L R T + + Sbjct: 192 PLFSREEGPLLVGHNLKFDLLFLLKAGVWRASGKRLWDTGLAHQVL-------------- 237 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK---- 173 + +M K+L + Y D V +++ Sbjct: 238 HAQARMPALKDL-------APGLDKTLQTSDWGGPLSSEQVAYAGLDAAVPLVLYREQRE 290 Query: 174 -----RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 RLE + E+ + +G L + + E L EL Sbjct: 291 RARTLRLEKVLEVERRALPAVAWMELKGVPFAPELWEEAAREAEREAEALRGELPFGV-- 348 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++ +L E GL L D E T + P ++ R A++ Sbjct: 349 ---NWNSPAQVLAYLKGE-GLDLPDTREDTLAG-----YREHPLVAKLLRYR-EAAKRVS 398 Query: 289 LKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + +N GR+ + Q +GA TGR + Q +PR Sbjct: 399 TYGKEWAKHLNPATGRIHPSWQQIGAE-TGRMACRKPNLQQVPRD--------------- 442 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R EG+ ++ AD + IE R+ A +A E L+AF G+D Sbjct: 443 --------------PALRRAFRPKEGRVMLKADFSQIELRIAAAIAKEGRMLRAFREGKD 488 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 L+ T + +V K+ R + K + L Y GA+ ++ A T Sbjct: 489 LHALTASLVLGKPLEEVGKEDRQLAKALNFGLLYGLGAEGLRRYALT------------- 535 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A ++++ A+ + + + Sbjct: 536 -------------------------AYGVKLTLEEAQKLRDAFFRAYPALKRWHR----- 565 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + + +++ GR TT R Sbjct: 566 ------------------------SQPEGEVVVRTLLGRRR-------------TTDRYT 588 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDT-DE 641 + VQ D L + + G VL VHDE+V E P+ + Sbjct: 589 EK--------LNTPVQGTGADGLKMALALLWENRGLLWGAFPVLAVHDEVVLEAPEEGAK 640 Query: 642 FNASMLYHLMTSNPSWAKG--LPLKAEGYE 669 L LM G +P++ EG Sbjct: 641 EYLETLTALMRRGMEEVLGGAVPVEVEGGI 670 >gi|159146205|gb|ABW90566.1| DNA polymerase [Bacteriophage APSE-2] gi|159146207|gb|ABW90567.1| DNA polymerase [Bacteriophage APSE-2] gi|159146209|gb|ABW90568.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 133/367 (36%), Positives = 200/367 (54%), Gaps = 9/367 (2%) Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + L + Sbjct: 5 ELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQHI 64 Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 G+ L D+ +T QR ++ + P ++ + R+++ ++ K L++++++DGR Sbjct: 65 ASAFGITLPDMQASTLQRRIND-PDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADGR 123 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIIS 361 LRGT QF GASRTGRW+G VF P NLPRP+ +D I L D +Q+ S Sbjct: 124 LRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTS 183 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YVTTYARS 416 +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+ AF ++ Y YAR+ Sbjct: 184 SALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARA 243 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 FN+ P VTK+QR IGKVMEL LGY GG AF A GL+L+ A N P Sbjct: 244 FNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPGVKR 303 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 +A + + E + + + T C+ +K+ WR H + W ++ A +Q I++ Sbjct: 304 EAMRWYQKSVETDKTYGLSEKIFVT-CDALKRMWRNAHPQTVSFWYDIEDAVKQAIQSPG 362 Query: 537 AIIARKR 543 ++ Sbjct: 363 IAFKCRK 369 >gi|159146201|gb|ABW90564.1| DNA polymerase [Bacteriophage APSE-2] gi|159146213|gb|ABW90570.1| DNA polymerase [Bacteriophage APSE-2] gi|159146218|gb|ABW90572.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 133/367 (36%), Positives = 201/367 (54%), Gaps = 9/367 (2%) Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + L + Sbjct: 5 ELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQHI 64 Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 G+ L D+ +T QR ++ + P ++ + R+++ ++ K L++++++DGR Sbjct: 65 ASAFGITLPDMQASTLQRRIND-PDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADGR 123 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIIS 361 LRGT QF GASRTGRW+G VF P NLPRP+ +D I L D +Q+ S Sbjct: 124 LRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTS 183 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YVTTYARS 416 +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+KAF ++ Y YAR+ Sbjct: 184 SALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARA 243 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 FN+ P VTKDQR IGKVMEL LGY GG AF A GL+L+ A + P Sbjct: 244 FNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPGVKR 303 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 +A ++ + E + + + C+ +K+ WR H + W ++ A +Q I++ Sbjct: 304 EATSWYQKSVETDKTYGLSEKIFVN-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSPG 362 Query: 537 AIIARKR 543 ++ Sbjct: 363 IAFKCRK 369 >gi|223932667|ref|ZP_03624666.1| DNA polymerase I [Streptococcus suis 89/1591] gi|302024099|ref|ZP_07249310.1| DNA polymerase I [Streptococcus suis 05HAS68] gi|223898637|gb|EEF64999.1| DNA polymerase I [Streptococcus suis 89/1591] Length = 878 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 96/674 (14%), Positives = 183/674 (27%), Gaps = 151/674 (22%) Query: 28 VCVIL--------FAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFER 77 ++ + D P + VL++ LEN + ++ Sbjct: 324 FEILGENYHREDLVGLAWGDKEKIYV---GGPELLDSPVLRDFLENQTIK------TYDF 374 Query: 78 T---VLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALK-----LSSQKMEEGK 127 VL + +P + + ++L + +G Sbjct: 375 KRGKVLLDRKEITLPPAT-FDSRLAKYLLSTVEDNSLTTIANLYGQISLVPDEAVYGKGA 433 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187 +L + E L + + E L Sbjct: 434 KLDLPEREIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLF----------DMELPLAN 483 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + G V+ + +V +L +E+ L + ++L T LF E Sbjct: 484 VLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQ-EFNINSPKQLGTILFEEM 542 Query: 248 GLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 GL L T+ +T VL + P ++ R ++ + L +A+ DG Sbjct: 543 GLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQ-ITKLQSTYVVGLQDAILEDG 601 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 ++ ++TGR S QN+P Sbjct: 602 KIHTRYVQD-LTQTGRLSSTDPNLQNIPVRLEQGR------------------------- 635 Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R + S E L+ +D + IE RVLA ++ ++ ++AF+ G D++ +T R F + Sbjct: 636 LIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEK 695 Query: 422 -AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 VT + R K + + Y + L + ++ E + +N Sbjct: 696 AEDVTPNDRRNAKAVNFGVVYGIS-----DFGLSNNLGITRKEAKAYIDTYFERFPGIKN 750 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + + + + E R + V + + G A Sbjct: 751 YMETIVREARDKGYVETIYKRRRELPDINSR--NFNVRNF---AERTAINSPIQGSAADI 805 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 K + L + ML Sbjct: 806 LKVAMINLDKALTEAGLATRML-------------------------------------- 827 Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAK 659 + IVL V P + M+ M S S Sbjct: 828 --------------LQVHDE---IVLEV--------PVAELETVKAMVKETMESAIS--L 860 Query: 660 GLPLKAEGYESKRY 673 +PL A+ E + Sbjct: 861 SVPLIADENEGSTW 874 >gi|312074456|ref|XP_003139979.1| hypothetical protein LOAG_04394 [Loa loa] gi|307764861|gb|EFO24095.1| hypothetical protein LOAG_04394 [Loa loa] Length = 1001 Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 89/678 (13%), Positives = 191/678 (28%), Gaps = 148/678 (21%) Query: 20 GICKYAEDVCVILFAFGFDDHPVELWDCVHDP-------VMPQVLKEALENTDVTIVAHN 72 G+ + +I A + D + + L L + + Sbjct: 438 GLGIAIYNRDIIGIALCALNEECVYIDFRPNRISEIEIYERIETLDNILRSEQQKYI--- 494 Query: 73 SYFERTVLKACF----NLDIPI---HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125 ++ P + IC L+ ++ Sbjct: 495 --YDLVSFSRSLRYLRGTTYPPSLFNHCICIQTLSYLAHYRAS----------DGNSAIS 542 Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185 ++L+++ E + + A F D ++ I E + Sbjct: 543 FQDLVSQLTSPER-AIILRNATSRLQAAISAFICLHMHDDLLSAAIRLSSMKSVELELQS 601 Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 L I G D A L+ + + T ++ + ++ + ++ LF+ Sbjct: 602 VVLFSEIETMGIAFDTNKAEILHSKLKQKLTDIEAKAYDISGIP-FNFGSAAEISQILFV 660 Query: 246 ETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + +L+ +T + VL P + R S + L +L+++ SD Sbjct: 661 RLQIPPPNLSTGRHYSTNKFVLQQLAPNYPIINLILEWRR-ISTALTTSLPSLLKSCCSD 719 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 GR+R + GR QN+ + Sbjct: 720 GRIRTNFITYSCT--GRVLTENPNVQNVQKDGIID------------------------G 753 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +RS IA +G+ L+ +D +E R+LA ++ + + F D + + +N Sbjct: 754 FSIRSLFIAPKGRILLSSDYRQLEMRMLAHLSADSQLISLFLAEGDFFEIITNK-WNTNE 812 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 K R K + + Y G+ + Sbjct: 813 TLPVKVDRNKVKQLCYGIIYGMGSLSLS-------------------------------- 840 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 E +++ ++ Q+ +V +++ Sbjct: 841 ------------KELGIQKQHAQQMIISFFQQFPKVRTWMDKILAVCR------------ 876 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 + + GR + + L T + Q R+ Sbjct: 877 --------------ADGFVSTLLGRRRFLPQINS---MLQTESAQAERQAI------NTC 913 Query: 602 VQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPS 656 +Q ++ ++N K IV+ +HDE++ ET ++ + ++ H MTS Sbjct: 914 IQGSVAELFKMALLNLQKNLLGTNSSIVMQMHDEVLVETDESSVASVVEIIKHSMTSVMP 973 Query: 657 WAKGLPLKAEGYESKRYR 674 +PL + K + Sbjct: 974 -NLRVPLAVKISSGKNWG 990 >gi|256379536|ref|YP_003103196.1| DNA polymerase I [Actinosynnema mirum DSM 43827] gi|255923839|gb|ACU39350.1| DNA polymerase I [Actinosynnema mirum DSM 43827] Length = 888 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 96/670 (14%), Positives = 200/670 (29%), Gaps = 130/670 (19%) Query: 19 CGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFER 77 G+ D V AF + L + L + H++ Sbjct: 329 VGVASRESDGEVEGLAFAV-GGEGGYVRLAALTPDDETALADWLASDA-PKAVHDAK--- 383 Query: 78 TVLKACFNLDIPIHRWI-CTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARF 133 +L + + T + A +L + L+ +++ + + Sbjct: 384 PLLHRLRARGLRLGGLTSDTALAAYLVRPGQRSFSLDDL--VLRHLQRELRAEEPGGGQL 441 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193 + E + E DV T E+ + + + EL L Sbjct: 442 SLLDEEEDESGKAATAAIVRASAVAELA--DVLDT-ELHRTGQEGLLADLELPLLALLAE 498 Query: 194 DRGY--CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 G VD L + Q+ ++ + + ++L+ LF E G+ Sbjct: 499 IEGIGIAVDDEHLTGLEAHFAAGVKQAAQDAYAVIGKEI-NLGSPKQLQVVLFDELGMPK 557 Query: 252 EDLTETT---CQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T+T L S P + +R +R ++ L++A+ DGR+ Sbjct: 558 TKKTKTGYTTDADALQSLFESTQHPFLQHLLAHR-DVTRLKTT-VDGLLKAVADDGRIHT 615 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 T A+ TGR S QN+P + +R Sbjct: 616 TFHQTIAA-TGRLSSTDPNLQNIPIRTDEGRR-------------------------IRE 649 Query: 367 CVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + G +L+ AD + IE R++A ++G++ ++AF +GEDL+ +++F+V +VT Sbjct: 650 GFVVGPGYAELMTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHTFVASKAFSVPTGEVT 709 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 +QR K M L Y + L + + + + ++ + + Sbjct: 710 AEQRRRVKAMSYGLAYG-----LSEYGLAQQLRIPAAEAREQMEAYFSRFGGVRDYLQSI 764 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 E + + +RR Sbjct: 765 VEEARKKGYTETI-----------------------------------------LGRRRY 783 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 +P + + + + + + + + G + QA+ Sbjct: 784 LPDLNSDNRQ-----------RREMAERMALNAPIQGSAADIIKVAMLG------VFQAL 826 Query: 606 -SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663 + ++ + ++ DE+V E D + L M + +PL Sbjct: 827 EASELTSRMLLQVH-----------DELVLEIADGERAAVESLVREHMGNAFQ--LSVPL 873 Query: 664 KAEGYESKRY 673 + + + Sbjct: 874 EVSVGVGRSW 883 >gi|309799219|ref|ZP_07693468.1| DNA polymerase I [Streptococcus infantis SK1302] gi|308117153|gb|EFO54580.1| DNA polymerase I [Streptococcus infantis SK1302] Length = 680 Score = 211 bits (537), Expect = 4e-52, Method: Composition-based stats. Identities = 92/664 (13%), Positives = 177/664 (26%), Gaps = 142/664 (21%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKAC 83 ++ FA+ D + Q LK+ LE V ++ VL Sbjct: 136 DLVGFAWSCGDK----LYATDKLELLQNPILKDFLE-KTPLKV-----YDFKKAKVLLNR 185 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 F LD+ + + + + Sbjct: 186 FGLDLQ-APAFDSRLAKYLL---------STVENNEISTIASLYGQTYLVDDETFYGKGV 235 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGY 197 + P V + ++L EQ L ++ + G Sbjct: 236 KKAIPERETFLEHLARKVAVLVETEPVLLEKLSENGQLNLLYDMEQPLAFVLAKMEIAGI 295 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLT 255 V + ++ KL QE+ L + ++L LF G + T Sbjct: 296 KVKKETLLEMQAGNELVIEKLTQEIYELAG-EEFNINSPKQLGELLFENLGFPIEYTKKT 354 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 355 KTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD- 412 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P +R + Sbjct: 413 LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEW 447 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 448 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 507 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + Y + L ++ ++ E + +N+ + Sbjct: 508 NAKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREAR 562 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + + E R + + + + G A K + L Sbjct: 563 DKGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQLDK 617 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 ML Sbjct: 618 ALVAGGYQTKML------------------------------------------------ 629 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYE 669 + IVL V P ++ + M +PL A+ E Sbjct: 630 ----LQVHDE---IVLEV--------PKSELAAIKKIVKQTMEEAIQ--LSVPLIADENE 672 Query: 670 SKRY 673 + Sbjct: 673 GVTW 676 >gi|319758476|gb|ADV70418.1| DNA polymerase I [Streptococcus suis JS14] Length = 878 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 94/674 (13%), Positives = 181/674 (26%), Gaps = 151/674 (22%) Query: 28 VCVIL--------FAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFER 77 ++ + D P + VL++ LEN + ++ Sbjct: 324 FEILGENYHREDLVGLAWGDKEKIYV---GGPELLDSPVLRDFLENQTIK------TYDF 374 Query: 78 T---VLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALK-----LSSQKMEEGK 127 VL + +P + + ++L + +G Sbjct: 375 KRGKVLLDRKEITLPPAT-FDSRLAKYLLSTVEDNSLTTIANLYGQISLVPDEAVYGKGA 433 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187 +L + E L + + E L Sbjct: 434 KLDLPEREIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLF----------DMELPLAN 483 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + G V+ + +V +L +E+ L + ++L LF E Sbjct: 484 VLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQ-EFNINSPKQLGIILFEEM 542 Query: 248 GLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 GL L T+ +T VL + P ++ R ++ + L +A+ DG Sbjct: 543 GLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQ-ITKLQSTYVVGLQDAILEDG 601 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 ++ ++TGR S QN+P Sbjct: 602 KIHTRYVQD-LTQTGRLSSTDPNLQNIPVRLEQGR------------------------- 635 Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R + S E L+ +D + IE RVLA ++ ++ ++AF+ G D++ +T R F + Sbjct: 636 LIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEK 695 Query: 422 -AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 VT + R K + + Y + L + ++ E + +N Sbjct: 696 AEDVTPNDRRNAKAVNFGVVYGIS-----DFGLSNNLGITRKEAKAYIDTYFERFPGIKN 750 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + + + + E R + V + + G A Sbjct: 751 YMETIVREARDKGYVETIYKRRRELPDINSR--NFNVRNF---AERTAINSPIQGSAADI 805 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 K + L + ML Sbjct: 806 LKVAMINLDKALTEAGLATRML-------------------------------------- 827 Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAK 659 + IVL V P + M+ M S S Sbjct: 828 --------------LQVHDE---IVLEV--------PVAELETVKAMVKETMESAIS--L 860 Query: 660 GLPLKAEGYESKRY 673 +PL + E + Sbjct: 861 SVPLIVDENEGPTW 874 >gi|330832426|ref|YP_004401251.1| DNA polymerase I [Streptococcus suis ST3] gi|329306649|gb|AEB81065.1| DNA polymerase I [Streptococcus suis ST3] Length = 878 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 101/669 (15%), Positives = 192/669 (28%), Gaps = 141/669 (21%) Query: 28 VCVIL--------FAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFER 77 ++ + D P + VL++ LEN + ++ Sbjct: 324 FEILGENYHREDLVGLAWGDKEKIYV---GGPELLDSPVLRDFLENQTIK------TYDF 374 Query: 78 T---VLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALKLSSQKMEEGKELIAR 132 VL + +P + + ++L + +S +E A Sbjct: 375 KRGKVLLDRKEITLPPAT-FDSRLAKYLLSTVEDNSLTTIANLYGQTSLVPDE-----AI 428 Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192 + KG + H + + E ++L+ L E L + + Sbjct: 429 YGKGAKLDLPEREIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDMELPLANVLAKM 488 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL- 251 G V+ + +V +L +E+ L + ++L T LF E GL L Sbjct: 489 EIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQ-EFNINSPKQLGTILFEEMGLPLE 547 Query: 252 -EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 T+ +T VL + P ++ R ++ + L +A+ DG++ Sbjct: 548 YTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQ-ITKLQSTYVVGLQDAILEDGKIHTR 606 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 ++TGR S QN+P +R Sbjct: 607 YVQD-LTQTGRLSSTDPNLQNIPVRLEQGR-------------------------LIRKA 640 Query: 368 VIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVT 425 + S E L+ +D + IE RVLA ++ ++ ++AF+ G D++ +T R F + VT Sbjct: 641 FVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEKAEDVT 700 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 + R K + + Y + L + ++ E + +N+ + Sbjct: 701 PNDRRNAKAVNFGVVYGIS-----DFGLSNNLGITRKEAKAYIDTYFERFPGIKNYMETI 755 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + E R + V + + G A K Sbjct: 756 VREARDKGYVETIYKRRRELPDINSR--NFNVRNF---AERTAINSPIQGSAADILKVAM 810 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 + L + ML Sbjct: 811 INLDKALTEAGLATRML------------------------------------------- 827 Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLK 664 + IVL V P + M+ M S S +PL Sbjct: 828 ---------LQVHDE---IVLEV--------PVAELETVKAMVKETMESAIS--LSVPLI 865 Query: 665 AEGYESKRY 673 A+ E + Sbjct: 866 ADENEGSTW 874 >gi|322373711|ref|ZP_08048247.1| DNA polymerase I [Streptococcus sp. C150] gi|321278753|gb|EFX55822.1| DNA polymerase I [Streptococcus sp. C150] Length = 879 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 96/663 (14%), Positives = 184/663 (27%), Gaps = 143/663 (21%) Query: 28 VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ F + + D + + AL + V N ++ Sbjct: 325 FEILGDNYHTEPIIGFAWGNDKQIYASTDTDLLKSDAFQTAL-SKAV-----NI-YDFKR 377 Query: 79 --VLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIA 131 VL + +D+P + S + + L L + ++ GK Sbjct: 378 SKVLLSHLGIDLPTAN-FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVVYGKGAKR 436 Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191 + E + + A + E L E L + Sbjct: 437 AVPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHSQSEL--------LFDMELPLANVLAK 488 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G V + + V KL QE+ + + ++L LF + L L Sbjct: 489 MEIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMAG-EEFNINSPKQLGVILFEKMELPL 547 Query: 252 --EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T+ +T VL + P ++ R ++ + L + + DG++ Sbjct: 548 EYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQ-ITKLQSTYVLGLQDYILEDGKIHT 606 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 ++TGR S QN+P +R Sbjct: 607 RYVQD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRK 640 Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424 + S E L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P V Sbjct: 641 AFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDV 700 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T + R K + + Y + L ++ N+ E + + + Sbjct: 701 TPNDRRNAKAVNFGIVYGIS-----DFGLSNNLGISRKKAKEYINTYFERYPGIKAYMEN 755 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + + + E R + V + + G A K Sbjct: 756 VVREAKDKGYVETLFHRRRELPDINSR--NFNVRNF---AERTAINSPIQGSAADILKIA 810 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 + L + ML Sbjct: 811 MINLDKALVEGGYKTKML------------------------------------------ 828 Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPL 663 + IVL V P+ + ++ M + A +PL Sbjct: 829 ----------LQVHDE---IVLEV--------PNDELVAMKALVKETMEAAVELA--VPL 865 Query: 664 KAE 666 A+ Sbjct: 866 IAD 868 >gi|307702767|ref|ZP_07639718.1| putative DNA polymerase [Streptococcus oralis ATCC 35037] gi|307623680|gb|EFO02666.1| putative DNA polymerase [Streptococcus oralis ATCC 35037] Length = 524 Score = 210 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 90/634 (14%), Positives = 170/634 (26%), Gaps = 136/634 (21%) Query: 57 LKEALENTDVTIVAHNSYFE---RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 KE LE T V ++ VL L++ + + Sbjct: 6 FKEFLEKTS-LKV-----YDFKKAKVLLNRLGLNLQ-APAFDSRLAKYLL---------S 49 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + P + V + + Sbjct: 50 TVENNEISTIASLYSQTYLVDDETFYGKGVKKAIPEREKFLEHLARKVAVLVETEPVLLE 109 Query: 174 RLEPL------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 +L EQ L ++ + G V + +V +L QE+ L Sbjct: 110 KLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENEVVIEQLTQEIYELAG 169 Query: 228 GLVSSSRCLEKLKTWLFLETGLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L LF + GL L T+ +T VL + P ++ + R Sbjct: 170 -EEFNINSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQ- 227 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ + L + + DG++ ++TGR S QN+P Sbjct: 228 IAKIQSTYVIGLQDWILDDGKIHTRYVQD-LTQTGRLSSVDPNLQNIPVRLEQGR----- 281 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R + E L+ +D + IE RVLA ++ ++ +KA Sbjct: 282 --------------------LIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKA 321 Query: 402 FETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F+ G D++ +T R F + P VT + R K + + Y L ++ Sbjct: 322 FQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYGIS-----DFGLANNLGIS 376 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 ++ E + +N+ + + + E R + + Sbjct: 377 RKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFKRRRELPDINSR--NFNIRGF 434 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + G A K + L + ML Sbjct: 435 ---AERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKML------------------ 473 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 + IVL V P ++ Sbjct: 474 ----------------------------------LQVHDE---IVLEV--------PKSE 488 Query: 641 EFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 L M +PL A+ E + Sbjct: 489 LAAVKDLVKQTMEEAIQ--LSVPLIADENEGATW 520 >gi|311742282|ref|ZP_07716091.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272] gi|311313910|gb|EFQ83818.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272] Length = 891 Score = 210 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 90/658 (13%), Positives = 166/658 (25%), Gaps = 125/658 (18%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFN 85 D A D + L + + +V H++ + L Sbjct: 343 DARARALAIATADGHAAWVGVDTLDADDEAAIAGWLADAERPVVLHDAKGQLHALA-AQG 401 Query: 86 LDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 + T + L + G + + Sbjct: 402 WTVR-GLVADTAIATYLVRPDQRAYDLADLSVRYLHRELV-TTGADTGQLAFEEVDTGAD 459 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 + + E L + T+ G VD Sbjct: 460 VAVQRARAALDLWAVIGAELEASDSMSLLADL-------ELPLVDVLMTMESTGIAVDTD 512 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TC 259 TL+ QE ++ V + ++L+ LF E G+ T+T T Sbjct: 513 HLDTLHAEFTERMLGAAQEAYAVIGREV-NLGSPKQLQVVLFDELGMPRTKRTKTGYTTD 571 Query: 260 QRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 L K P + +R +R + L + + DGR+ T A+ TG Sbjct: 572 ADALQGLFAKTQHPFLEHLLAHR-DVTRLRQT-VEGLQKTVAPDGRIHTTYAQTIAA-TG 628 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KL 376 R S QN+P + S +R G L Sbjct: 629 RLSSADPNLQNIPIRTESGRR-------------------------IREAFCVGPGFETL 663 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R++A ++ + ++AF TGED + A+ F+ P + RA K M Sbjct: 664 LTADYSQIEMRIMAHLSEDAGLIEAFRTGEDFHTVMAAKVFDRDPGDIDGGLRARIKAMN 723 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 L Y L ++ V + + + ++ + + + Sbjct: 724 YGLAYG-----LSSYGLGQQLGISPGDAQVLMDDYFQTFGGVRDYLHGVVDEARQTGFTA 778 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 +G R+ + + + E R ++ Sbjct: 779 TILGR---------RRYLPDLQSDNRQRREMAE--------------RMALNAPIQGSAA 815 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 +LI + G D G ++ Sbjct: 816 DLIKVAMLGVDRALADAGL----------------------------GS------RMLLQ 841 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 +VL E + L M + +PL + + Sbjct: 842 VHDE---LVL--------EVAPGERDALEALVREQMAAAAD--LSVPLDVSVGVGRTW 886 >gi|146319032|ref|YP_001198744.1| DNA polymerase I [Streptococcus suis 05ZYH33] gi|146321240|ref|YP_001200951.1| DNA polymerase I [Streptococcus suis 98HAH33] gi|253752097|ref|YP_003025238.1| DNA polymerase I [Streptococcus suis SC84] gi|253753922|ref|YP_003027063.1| DNA polymerase I [Streptococcus suis P1/7] gi|253755203|ref|YP_003028343.1| DNA polymerase I [Streptococcus suis BM407] gi|145689838|gb|ABP90344.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain [Streptococcus suis 05ZYH33] gi|145692046|gb|ABP92551.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain [Streptococcus suis 98HAH33] gi|251816386|emb|CAZ52017.1| DNA polymerase I [Streptococcus suis SC84] gi|251817667|emb|CAZ55415.1| DNA polymerase I [Streptococcus suis BM407] gi|251820168|emb|CAR46523.1| DNA polymerase I [Streptococcus suis P1/7] gi|292558680|gb|ADE31681.1| DNA polymerase I [Streptococcus suis GZ1] Length = 878 Score = 209 bits (533), Expect = 8e-52, Method: Composition-based stats. Identities = 95/674 (14%), Positives = 184/674 (27%), Gaps = 151/674 (22%) Query: 28 VCVIL--------FAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFER 77 ++ + D P + VL++ LE+ + ++ Sbjct: 324 FEILGENYHREDLVGLAWGDKEKIYV---GGPELLDSPVLRDFLESQTIK------TYDF 374 Query: 78 T---VLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALK-----LSSQKMEEGK 127 VL + +P + + ++L + +G Sbjct: 375 KRGKVLLDRKEIKLPPAT-FDSRLAKYLLSTVEDNSLTTIANLYGQTSLVPDEAVYGKGA 433 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187 +L + E L + + E L Sbjct: 434 KLDLPEREIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLF----------DMELPLAN 483 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + G V+ + +V +L +E+ L + ++L T LF + Sbjct: 484 VLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQ-EFNINSPKQLGTILFEDM 542 Query: 248 GLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 GL L T+ +T VL + P ++ R ++ + L +A+ DG Sbjct: 543 GLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQ-ITKLQSTYVVGLQDAILEDG 601 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 ++ ++TGR S QN+P Sbjct: 602 KIHTRYVQD-LTQTGRLSSTDPNLQNIPVRLEQGR------------------------- 635 Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R + S E L+ +D + IE RVLA ++ +Q ++AF+ G D++ +T R F + Sbjct: 636 LIRKAFVPSLENSVLLASDYSQIELRVLAHISQDQHLIEAFQQGADIHTSTAMRVFGIEK 695 Query: 422 AQV-TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 A+ T + R K + + Y + L + ++ E + +N Sbjct: 696 AEYVTPNDRRNAKAVNFGVVYGIS-----DFGLSNNLGITRKEAKAYIDTYFERFPGIKN 750 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + + + + E R + V + + G A Sbjct: 751 YMETIVREARDKGYVETIYKRRRELPDINSR--NFNVRNF---AERTAINSPIQGSAADI 805 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 K + L + ML Sbjct: 806 LKVAMINLDKALTEAGLATRML-------------------------------------- 827 Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAK 659 + IVL V P + M+ M S S Sbjct: 828 --------------LQVHDE---IVLEV--------PVAELETVKAMVKETMESAIS--L 860 Query: 660 GLPLKAEGYESKRY 673 +PL A+ E + Sbjct: 861 SVPLIADENEGSTW 874 >gi|194668164|ref|XP_601658.4| PREDICTED: polymerase (DNA directed) nu [Bos taurus] Length = 975 Score = 209 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 93/655 (14%), Positives = 192/655 (29%), Gaps = 145/655 (22%) Query: 57 LKEALENTDVTIVAHNSY-FERTVLKACFNLD----IPIHRWICTLVLARSNGLPS---A 108 L+E L ++ N+ F RT L+ + + + + A + Sbjct: 301 LREVLRRK-RPVICFNAKDFVRTALQLFGDDGSWKCVAGFVGLDPRIAAWLIDPSDAAPS 359 Query: 109 LKAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 + + + L + L G + ++ + + V Sbjct: 360 FEDLVAKYLGNPT-------TLTVNSMHGNSSRKTVNQTVRAKLRVLHRLTMHLCSQLQV 412 Query: 168 T--REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 ++F LE L + + V+ ++ ++ +L+QE + Sbjct: 413 CGLWQLFWTLE------LPLIPILAVMESHRIRVNKEEMERMSALLGSRLKELEQEAHFV 466 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL-------EDLT----ETTCQRVLSSNKKLTPQAI 274 +L+ LF + LHL +T L++ + L P Sbjct: 467 AG-EQFLITSNHQLREILFGKLRLHLLRPQDASPATGLRRLPSTSGAELNALQDLHPLPR 525 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + R + ++ L+ A G + T G + +GR S Q + + Sbjct: 526 IILEYRQ-VHKIKSTFVDGLL-ACMKKGSVSSTWNQTG-TVSGRLSAKHPNIQGISKHPI 582 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 + S +S R+ ++SEG + AD + IE R+LA ++G Sbjct: 583 QITK-----------PQSFKGEEDELSISPRTAFVSSEGYTFLAADFSQIELRILAHLSG 631 Query: 395 EQWKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + LK F+ +D++ T ++ +V+P +VT R K + A+ Y Sbjct: 632 DPELLKLFQESERDDVFSTLTSQWKDVSPERVTHADREQTKKVVYAVVYG---------- 681 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 A R +++ Q Sbjct: 682 ----------------------------------AGKERLAACLGVPVREAARFLESFLQ 707 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 K+ ++ + + + G + GR Sbjct: 708 KYKKIKDF---TQATVARCQQTGY-----------------------VESIMGRRRPLPR 741 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-------YDIV 625 + R++ Q R+ +VQ + D+ M+ A ++ Sbjct: 742 I---RAHDPQLRAQAERQAA------NFVVQGSAADLCKMAMIRIFTAMATSPTLTARLL 792 Query: 626 LTVHDEIVCETPDTDEFNASMLYH-LMTS-----NPSWAKGLPLKAEGYESKRYR 674 +HDE++ E D+ + L M + +PLK + + Sbjct: 793 AQIHDELLFEVEDSQVPEFTALVQGTMEALQHVPALELQLQVPLKVSLSAGRSWG 847 >gi|37626129|gb|AAQ96505.1| putative DNA polymerase [Vibrio phage VP16T] Length = 714 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 147/671 (21%), Positives = 219/671 (32%), Gaps = 149/671 (22%) Query: 5 FIDFETRSP---------------------IDLTKCGICKYAEDV--CVILFAFGFDDHP 41 DFET S + G YAE ++ + D Sbjct: 36 SFDFETYSEAGFVINPETGKVHTAAKTGNKNGIALVGTPVYAEHPSTEILCLYYDLKDGK 95 Query: 42 V--ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT----VLKACFNLD-IPIHRWI 94 P L E + N I A N FE VL + + + Sbjct: 96 GRRAYIP---GGPKPTDLIEHIANGG-PIAAWNITFEFWIWNMVLAKREGWPWLQLEQCY 151 Query: 95 CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY---DRNKPNHR 151 C + AR LP +L A +ALK S K ++GK+LI + C+ + Sbjct: 152 CDMAKARRFSLPGSLDAAAQALKTSP-KDKKGKQLINKLCRPVSATKARPLPRWTLYTAP 210 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 + + YC DV + ++ E+E W DQ IN RG VDV IV Sbjct: 211 QDYSDLYAYCDQDVKSEDHVSALTPDMTPSERETWLADQRINARGVQVDVESLDNALDIV 270 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 D + EL ++T G V S + K+ +L G + +LT + L L P Sbjct: 271 DQTTRRFTMELAAITNGAVGSVSEVAKMTDFL-AGLGCRMHNLTADSVSEALER-DDLNP 328 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 A +V R + + V KL +L ++SDGRLR F GA TGRWS QNL Sbjct: 329 TARRVLEIREALAGANVKKLFSLKAQISSDGRLRNQYNFFGAG-TGRWSAGGVQLQNLTS 387 Query: 332 PSRSHEEL----------------------------------------------DQIITH 345 + D + Sbjct: 388 KGPKSKTCNGCGRIVGKACTIEVMGATGLCPECGGNEWTDNKDWTVDAVRWALKDLTHRN 447 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 L I DP+ ++S C+R IA+ GKK V D + IEA VLA +A +W+L+ F T Sbjct: 448 LDLIIAIWGDPITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRLEVFRTH 507 Query: 406 EDLYVTTYARSFNVAPAQV----------TKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +Y + ++ V ++ ++++GKV ELA GY G A++ + Sbjct: 508 GKIYEMSASKISGVPFEEMMAYKEQNKHDHPLRKSLGKVAELASGYGGWLGAWKAFGAEA 567 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + ++ WR Sbjct: 568 HFADD----------------------------------------DEMKKAILGWRDASP 587 Query: 516 RVSELW---NELHQAFEQTIENGK---------AIIARKRRDVPLVYMKKDKNNLILMLP 563 + E W + + + K V + + L LP Sbjct: 588 EIVEFWGGQYRRDPFTRKWTKEYFGLEGAAIMAILNPGKCYAVHDITYAVHDDVLYCRLP 647 Query: 564 SGRSLVYRDVG 574 SGR L Y Sbjct: 648 SGRFLQYHQPR 658 >gi|4105277|gb|AAD02338.1| putative DNA polymerase [Homo sapiens] Length = 579 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 79/534 (14%), Positives = 164/534 (30%), Gaps = 122/534 (22%) Query: 167 VTREIFKRLEPLSSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +T ++ +L+ + L + + V+ + ++ +L+Q Sbjct: 40 LTMDLCSKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQ 99 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKKL 269 E + +L+ LF + L L + +T L++ + L Sbjct: 100 EAHFVAG-ERFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTVSEALNALRDL 158 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P + R + ++ L+ A G + T G + TGR S Q + Sbjct: 159 HPLPKIILEYRQ-VHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGI 215 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 + +T P R+ ++S+G + AD + IE R+L Sbjct: 216 SKHPIQITTPKNFKGKEDKILTISP----------RAMFVSSKGHTFLAADFSQIELRIL 265 Query: 390 AWMAGEQWKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++G+ LK F+ +D++ T ++ +V QVT R K + A+ Y GA Sbjct: 266 THLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVY--GAGK 323 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + +A+ G+ + + Sbjct: 324 ER-LAACLGVPIQ-----------------------------------------EAAQFL 341 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 +++ QK+ ++ + A Q + G + GR Sbjct: 342 ESFLQKYKKIKDF---ARAAIAQCHQTGCVVSI-----------------------MGRR 375 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKA 620 + ++ Q R+ +VQ + D+ M++ Sbjct: 376 RPLPRIH---AHDQQLRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTL 426 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 +V +HDE++ E D + L + +PLK + + Sbjct: 427 TARLVAQIHDELLFEVEDPQIPECAALVR---RTMESLEQVPLKVSLSAGRSWG 477 >gi|24378800|ref|NP_720755.1| DNA polymerase I [Streptococcus mutans UA159] gi|24376673|gb|AAN58061.1|AE014878_7 DNA polymerase I (POL I) [Streptococcus mutans UA159] Length = 878 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 93/652 (14%), Positives = 177/652 (27%), Gaps = 139/652 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89 + D + + KEAL ++ VL + +D+P Sbjct: 337 IGLAWGDDQAIYATTDTSLLTHDLFKEALSKP--IKT-----YDFKRGKVLLSHLGIDLP 389 Query: 90 IHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + + S + + L L + GK + Sbjct: 390 TAS-FDSRLAKYLLSTVENNNISTIARLYTDLPLETDDDVYGKGAKRAIPEKNVLLSHLA 448 Query: 145 RNKP--NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 + E + + E L + + G V Sbjct: 449 KKISVLLASEEPMRQKLSANDQLDLLF----------EMELPLANVLAKMEIAGISVRKE 498 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE---T 257 + + ++E L QE+ L + ++L LF + GL L T+ + Sbjct: 499 TLQDMERANEIELQALTQEIYDLAG-EAFNINSPKQLGVILFEKLGLPLSATKKTKTGYS 557 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL +P ++ R ++ + L ++++ DG++ ++TG Sbjct: 558 TAVDVLERLAHRSPIVAKILEYRQ-IAKLQSTYIIGLQDSISFDGKIHTRYLQD-LTQTG 615 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKL 376 R S QN+P +R + + L Sbjct: 616 RLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWKESVL 650 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVM 435 + +D + IE RVLA ++G++ + AF+ G D++ +T R F + P VT + R K + Sbjct: 651 LSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 710 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + Y L ++ A + E + +N+ + + Sbjct: 711 NFGVVYGIS-----DFGLANNLGISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYV 765 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + E R + + + + G A K + L K Sbjct: 766 ETLFHRRRELPDINSR--NFNIRSF---AERTAINSPIQGSAADILKVAMIHLDQALKKG 820 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + ML + Sbjct: 821 DYQSRML----------------------------------------------------L 828 Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 IVL V P+ + L M S +PL A+ Sbjct: 829 QVHDE---IVLEV--------PNAELEAIQKLVKETMESAIE--LSVPLVAD 867 >gi|297571466|ref|YP_003697240.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595] gi|296931813|gb|ADH92621.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595] Length = 898 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 90/660 (13%), Positives = 177/660 (26%), Gaps = 138/660 (20%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 + F P + L + +V + H+ + + Sbjct: 354 GYVFGGEPALI-----SEEDSAAFSALLSDPNVGKIGHSMKVQIHAW---LGEGYTLAGI 405 Query: 94 I-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 + T + A + + I + + + Sbjct: 406 VGDTEIDAYLLHPDQR--------TYDFTDLVQRYLAIDLGGGAQDTLGIGLDGEIVDDL 457 Query: 153 AWRLFGEYCKGDVTV-TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 A R + D E ++ + L E + + + RG VD L+ Sbjct: 458 AARAVATHDLRDAFARALETEEQSDALREMELRVCDVLARMEQRGIAVDADQLARLHADF 517 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN-- 266 D + + + ++L+ LF + GL T++ T L Sbjct: 518 DARVNQAATQAWEAIGDSSVNLSSPKQLQAVLFDQLGLPKTKKTKSGYTTNADALEQLLV 577 Query: 267 -----KKLTPQAIQ-----VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 + A Q + +R + L ++ D R+R T Q A+ T Sbjct: 578 KISMREDDQALAGQNFLTGLLAHRDAIKLRQS--VEGLQRSLGDDQRIRTTYQQTVAA-T 634 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-K 375 GR S QN+ + +R + +G Sbjct: 635 GRLSSTDPNLQNIHARTEEG-------------------------QKIREVFVPGDGYDY 669 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ AD + IE R++A ++G+ + AF G DL+ +R F VA ++VT QR+ K M Sbjct: 670 LMTADYSQIEMRLMAHLSGDAELIVAFNAGADLHNYVASRVFGVAESEVTPAQRSKIKAM 729 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 L Y + L + + + + + + + Sbjct: 730 SYGLVYG-----LSAFGLSAQLKIPVPEAQNLMDGYFSRFGRVKEYLDGLVAQARKDGFT 784 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 +G R+ +S ++ ++ E+ N + Sbjct: 785 QTLLGR---------RRYLPELSSTNRQVRESAERMALN------------APIQGSAAD 823 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 I ML R L + + ++ Sbjct: 824 IIKIAMLNVERELAAAQLSSRV------------------------------------LL 847 Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674 +VL E ++ + M + W +PL + +R Sbjct: 848 QVHDE---LVL--------EVAASEAEQVEAIVREQMGNA--WELSVPLSVGVGIGRNWR 894 >gi|330508158|ref|YP_004384586.1| DNA polymerase I [Methanosaeta concilii GP-6] gi|328928966|gb|AEB68768.1| DNA polymerase I, putative [Methanosaeta concilii GP-6] Length = 628 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 104/693 (15%), Positives = 195/693 (28%), Gaps = 140/693 (20%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHP----VELWDCVH----DPVMPQVLKEALENTDV 66 +LT G + + + P V D + L LEN + Sbjct: 38 NLTATGPDPLCH--EIQRISLALPNAPSSSTVYTVDIADRPELKESIIGDLAGLLENGRI 95 Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA-------RSNGLPSALKA-VGEAL-K 117 H+S F + ++A + ++ + K + L Sbjct: 96 KKTLHDSKFVLSFIRARAGRKLNFCSIFDVMLASQICWSGYYYLTPSGNPKNPWTKRLVD 155 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 S + E I +G + + A L + + Sbjct: 156 HSLASLAERHLGIILDEEGCPAQGAAALLPLHDILADLLAKNDLQRVADLEFR------- 208 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + G +D + A L + E ++ + + Sbjct: 209 -------AAIALVEMEISGIGLDSSGARDLIDQEEDEIIDQIWRMQDEAERKGFVTVSFD 261 Query: 238 KLKTWLFLETGLHLEDLT---------ETTCQRVLSSNKKLT-PQAIQVFNNRMRASRSA 287 + +L + + T VL S A + R + Sbjct: 262 GKRLCCYLNPDRQEDVMAFLAKRGYRPANTKAEVLKSLAAAGCSFAEALMRYRHLSYNLL 321 Query: 288 VLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 LN +E ++ DGR+ + + TGR S Q +PR Sbjct: 322 --FLNKWLEKVHPLDGRVHPQYFQIPS-STGRISSRHPNAQQIPRRGDD----------- 367 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 + +R + GK+ V ADL+ IE R++A ++G++ +AF G Sbjct: 368 --------------APAIRRLFRPAAGKRYVKADLSNIELRIMARISGDEAMQEAFIKGI 413 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ-KMASTTGLNLNTFAHL 465 DL+ T +R +VT QR K M L Y G AK+ Q ++ S G + Sbjct: 414 DLHRLTASRISGTPFEEVTDSQRQAAKAMNFLLIYGGSAKSLQWRILSDYGEFICLDETE 473 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + + + +S++ + Sbjct: 474 ERLERFFCSYPGVREWQKMQ-------------------------------LSQMSYTMQ 502 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 F + ++ R + GR ++ G + Sbjct: 503 HHFHNCVRGFFSLPLTATRTI-----------------LGRRRIWPRFGAGITASK---- 541 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDT-D 640 ++ Q D++ M + I+ ++HDEI+ E P+ Sbjct: 542 ---------FQMYNTPCQGTGADLIKLVMAEVYEKLSDEEARIIGSIHDEIILEVPEDRA 592 Query: 641 EFNASMLYHLMTSN-PSWAKGLPLKAEGYESKR 672 E A+ L +M +P+KAE + Sbjct: 593 EEYAARLKEIMERIGSEMLYPVPVKAEAKVMRN 625 >gi|194015681|ref|ZP_03054297.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bacillus pumilus ATCC 7061] gi|194013085|gb|EDW22651.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bacillus pumilus ATCC 7061] Length = 744 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 102/710 (14%), Positives = 197/710 (27%), Gaps = 180/710 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVIL-FAFGFDDHPVELWDCVHDPVMP------- 54 + D ET G+ + + ++ H ++P Sbjct: 136 EIVFDVETT--------GVDVW--NDYIVGHVITAIKADVHAYIPTRHKTILPQLSRDLV 185 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALK 110 + L+ E+ V +AHN+ F+ +L + + W T R ALK Sbjct: 186 NETLRPFYEDPTVGKLAHNAKFDIHMLDR-EGIKLRGLTW-DTQEAMRLLNENEPSFALK 243 Query: 111 AV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + L++ S + I + + + Y D VT Sbjct: 244 NLVTKYLRIESSTYGDLFGKIGF----------------DEVDDLEIALAYAAKDGDVTL 287 Query: 170 EIFKRLEPLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ +K E+ + Q + G+ +D+ A + + +L Sbjct: 288 KLRNFQREHLAKMPEVLRYYETVEVPLISVVQQMETTGFDIDLDYAEEYGRELKSGLDRL 347 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278 EL + + +LK L TG E L T ++VL K P ++ Sbjct: 348 YDELIEELGDV--NINSPAQLKPALERVTG---ESLASTDAKKVLKPLAKKYPVVKKLLE 402 Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWS--GCVFPPQNLPRPSRS 335 + + +N L E ++ G+L GA +TGR+S G QN P+ + Sbjct: 403 Y-KDSFKLYSTYINALPELIDQKTGKLYTNFNPNGA-KTGRFSSGGTGVNLQNQPKKA-- 458 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 R +A EG ++ D + E R LA+ + Sbjct: 459 -----------------------------RKLFVAPEGYAILGGDWSQQEYRCLAYFTQD 489 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + G+DLY + A F + Y Sbjct: 490 PKLVDNYFRGDDLYASIAAEVFGKPIEECGD-----------GSVY-------------- 524 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + ++ ++ ++ Sbjct: 525 -----------------RKQAKVIMLAVAYGGGANMLKDAIGVEKHEAQKFLDSFFERFP 567 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V E + ++ + + R D Sbjct: 568 VVKEWVESNQKFVKK------------------------HGFVWMDHLQ-RKRRLPDAK- 601 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----------GYDIV 625 +RS + T + T VQ + M+ + + + Sbjct: 602 DRSAKGHYSAVFT-------QSTNARVQGSAAIQTKATMIALQELCDRKTAEGRGEWRLW 654 Query: 626 LTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 VHDE + PDT + + +M + + +P K + S+R+ Sbjct: 655 CVVHDEALLLVPDTLTQQDVKDFEDVMVNTYVFG-NIPNKTDIEISRRWG 703 >gi|153792006|ref|NP_001093496.1| DNA polymerase nu [Danio rerio] gi|108735435|gb|ABG00195.1| DNA polymerase nu [Danio rerio] Length = 1146 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 78/617 (12%), Positives = 174/617 (28%), Gaps = 133/617 (21%) Query: 77 RTVLKACFNL---DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133 RTVL+ +L + + + + A + + LS + Sbjct: 610 RTVLRHFRDLSWTQVLGCQVMDPQIAAWLLDPADS--SSCFQTLLSKHYT---HQFTPTT 664 Query: 134 CKGETHECLYDRNKPNHREAWRLFGE--YCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191 + + + N +L E Y T+ +++ EQ++ + Sbjct: 665 LQPVLEQAKVTQVISNLSLLHKLMEELHYKLR----TQGLWQLYS---GIEQKMIPVLAA 717 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET---- 247 + VD ++++ + +L+QE +L+ LF + Sbjct: 718 MESYKMHVDKEALKKTSEMLGSKLKQLEQEAHQAAGQK-FLVSSSAQLRLILFEKLRLHE 776 Query: 248 ---GLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 L + +T + L +KL P + R + ++ ++ + Sbjct: 777 LCENKKLPKTVKQQQSTSETALLQLQKLHPLPKIILEYRQ-IHKIKTTFVDGILS--CTR 833 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 + ++ +GR S Q LP+ + + I++ Sbjct: 834 KTFISSTWNQTSTVSGRLSAKHPNFQALPK----------LPLQISKKQYIHGKASDIVT 883 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE-DLYVTTYARSFNVA 420 R+ I EG + AD +E R+LA ++ + L+ F++ E D + A+ V+ Sbjct: 884 VHPRAMFIPREGWTFLSADFCQVELRLLAHLSADPQLLRIFQSPEADAFTMLAAQWKGVS 943 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 +V+ + R K + Sbjct: 944 EDRVSLEDREQAKRIV-------------------------------------------- 959 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + + R + ++ + + V Q + Sbjct: 960 YSVVYGAGRERLSGILGVSAEEASRFQDSFLKTYREVPAFIQHTIQHCQS---------- 1009 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 + + GR + + L Q R+ Sbjct: 1010 ----------------HGFVRSIMGRRRFLPHIHSADWSLRN---QAERQA------VNF 1044 Query: 601 IVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTS 653 ++Q + D+ M+ +V +HDE++ E + A+++ M S Sbjct: 1045 VLQGSAADLAKLAMIRICSQVSSDSQTARLVAQIHDELLFEVEISQLDQFAALVKKTMES 1104 Query: 654 N--PSWA---KGLPLKA 665 + +PLK Sbjct: 1105 LQHIEYLNVNLSVPLKV 1121 >gi|212695718|ref|ZP_03303846.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM 7454] gi|212677391|gb|EEB36998.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM 7454] Length = 681 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 65/378 (17%), Positives = 127/378 (33%), Gaps = 54/378 (14%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A +++ D + K+ E+ ++ V+ + + VL ++I Sbjct: 338 IAIKSPSSKTFIYN--PDQKFVENFKKYFEDENINKVSFDIKEDI-VLFNKLGIEINF-P 393 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 + T+++ + + K L E K Sbjct: 394 YDDTMLMHYLIDPSRSSYDL---------KTFSQAFLKYEVLNEEDLLGKGRNKKSYKDL 444 Query: 153 AWRLFGEY------CKGDVT--VTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVA 202 + + G+Y D +T ++ + E E +L + + G+ D Sbjct: 445 SEKELGKYLSSIINAIEDSLDILTDKLKELSMYELYKDCEIKLSKVLAEMEITGFICDKN 504 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259 + V +E L++ + L + ++L LF + L + T+ +T Sbjct: 505 ELEKIKDEVSLELEDLEKVIYELAGS-EFNINSPKQLSIILFEDLELPIIKKTKTGYSTD 563 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 +VL + P ++ R + L +L E ++ DGR+R T + + TGR Sbjct: 564 AKVLEKLRDKHPIIGKIERYR-EMYKLKSTYLESLEECIDEDGRIRSTFKQNV-TATGRL 621 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S QNLP + + +R A + K L+ A Sbjct: 622 SSTEPNLQNLPIRTEEGRK-------------------------IRKAFKADKDKVLIDA 656 Query: 380 DLAGIEARVLAWMAGEQW 397 D + IE RVLA +A ++ Sbjct: 657 DYSQIELRVLAHLANDKK 674 >gi|325001391|ref|ZP_08122503.1| DNA polymerase I [Pseudonocardia sp. P1] Length = 537 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 98/630 (15%), Positives = 188/630 (29%), Gaps = 120/630 (19%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEA 115 L + L + DV AH+ L + T + A A Sbjct: 10 LGDWLADADVPKAAHDVKAVLHAL-RSRGWSLAGLT-SDTALAAYLARPGQRTFDLADLA 67 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L+ +++ + + + + A E + Sbjct: 68 LRYLRRELRTEEPADGQLSLLGGADEADAQAAQQEMLAASAIAELADA-LDTELAERGGT 126 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 E L+ E L ++ G VD L + + Q + + + Sbjct: 127 ELLADLELPLAFVLADCEAAGIAVDSETLSDLESDFGGQVREAAQNAYRVIGKEI-NLGS 185 Query: 236 LEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLK 290 ++L+ LF E + T+T T L S + + +R A+R V Sbjct: 186 PKQLQVVLFDELEMPKTKRTKTGYTTDADALQSLYEQTGHEFLQFLLQHR-DATRLKVT- 243 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ L++++ DGR+ T A+ TGR S QN+P + + Sbjct: 244 VDGLIKSVADDGRIHTTYSQTIAA-TGRLSSTDPNLQNVPIRTAAGRR------------ 290 Query: 351 TSDPDPLQIISDCVRSCVIASEG------KKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +R + G +L+ AD + IE R++A ++ ++ ++AF + Sbjct: 291 -------------IRDAFVVGTGPEGGAYAELMTADYSQIEMRIMAHLSEDEALIEAFRS 337 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 D + T AR F V A V+ +QRA K M L Y + L ++T Sbjct: 338 QHDFHAETAARVFGVEAAGVSVEQRAKIKAMNYGLAYG-----LSAYGLSGQLRISTDEA 392 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + + ++ + + + Sbjct: 393 KGLMDDYFAGFGGVRDYLAGVVDQARKDGYT----------------------------- 423 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 A I +RR +P + + + + + + Sbjct: 424 ------------ATILGRRRYLPDLTSDNRQ-----------RREMAERMALNAPIQGSA 460 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644 + + G + A+S + L M+ L VHDE+V E D + Sbjct: 461 ADIIKVAMLGVRR------ALSAEGLRSRML----------LQVHDELVLEVADGERETC 504 Query: 645 SMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 L M + +PL+ + + Sbjct: 505 EALVRREMAAAAD--LSVPLEVSVGYGRSW 532 >gi|145346862|ref|XP_001417901.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578129|gb|ABO96194.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 671 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 64/501 (12%), Positives = 140/501 (27%), Gaps = 138/501 (27%) Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE- 252 G D A + + +L++E + + + +++ L+ + L Sbjct: 253 HHGVGFDRTRADEQRRAANRRVEELEREAQKCIGVDI-NLASAQQVADVLYNKLKLPTPS 311 Query: 253 ----DLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS-RSAVLKLNTLVEAMNSDGR 303 +++ T VL S K A V N+R R+ + + +DGR Sbjct: 312 AHAMKGSKSSHLSTSVEVLQSLVKHHHFAQIVLNHRGALKERAMCDNYDK-SAVIAADGR 370 Query: 304 LRGTLQFLGA-SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 R Q+ + TGR S Q + R + Sbjct: 371 ARIHTQWNNTKTATGRLSSSHPNIQQVGRGTM---------------------------- 402 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 R+C +A G+ + AD + IE RVLA ++G+ + Sbjct: 403 --RNCFVAPTGRTFIAADYSQIELRVLAHLSGDDRLISLLR------------------- 441 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 K + G + + + Sbjct: 442 --------QAKGDVFVAIWNAGKG---------------LPLDAPAEKSTRDIAKRTAYG 478 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 ++ A + + + A+ + +V++ + + ++ + G + Sbjct: 479 IVYGQHATGLAEKLGVPKSEAQGYIAAFHRAFPKVNQW---ITRVLQRAEQTGAVTLPM- 534 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 SGR + + + ++ + I+ Sbjct: 535 ---------------------SGRHRALPKIHSKVFSERSEAQR---------QAVNTII 564 Query: 603 QAVSRDILAEGMMN------------------ATKAGYDIVLTVHDEIVCETPDTDEFNA 644 Q + D++ M+ K +V +HDE++ E + Sbjct: 565 QGTAADMMKTAMLRWTSAVGAGRFANDVAPGSVNKKRVTLVAQIHDELLFEVDEDYVPEC 624 Query: 645 SM-LYHLMTSNPSWAKGLPLK 664 + + ++M + A P+K Sbjct: 625 ARAVKNVMENAIKLAVPTPIK 645 >gi|194209373|ref|XP_001489138.2| PREDICTED: polymerase (DNA directed) nu [Equus caballus] Length = 900 Score = 207 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 97/660 (14%), Positives = 184/660 (27%), Gaps = 137/660 (20%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLAR 101 H VL + L+ ++ N+ F RTVL F D + A Sbjct: 298 AHSQFARDVLFQILKCK-CPVICFNAKDFVRTVL-QFFGDDGSWKHVADFVGLDPRIAAW 355 Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY- 160 + + K E + RN N L Y Sbjct: 356 LIDPS----DAAPSFEDLVAKYLENSITVKVSSTY----GNSSRNIVNQNVCANLRILYR 407 Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + +I+ + + E L + + V+ + ++ +L+Q Sbjct: 408 LTMGLCSQLKIYGLWQLFCTLELPLIPILAVMESHNIQVNKDEMERTSAVLGSRLKELEQ 467 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGL-------HLEDLTE----TTCQRVLSSNKKL 269 E + +L+ LF + L L +T + +L+ + Sbjct: 468 EAHFVAG-EQFLITSNNQLREILFGKLKLHLLRPRETLPKTGLQGHLSTSEAMLNVLQNF 526 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P + R + ++ L+ A G + T G + TGR S Q + Sbjct: 527 HPLPKIILEYRQ-VHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKRPNIQGI 583 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 + + +T P R+ ++SEG + AD + IE R+L Sbjct: 584 SKHPIQITKPQNFKGKEDDILTISP----------RTMFVSSEGHTFLAADFSQIELRIL 633 Query: 390 AWMAGEQWKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 A ++G+ LK F+ +D++ T ++ ++ VT +R K + ++ Y Sbjct: 634 AHLSGDPELLKLFQESERDDVFSTLTSQWKDIPSECVTHVEREQTKKVVYSVVY------ 687 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 A R Sbjct: 688 --------------------------------------GAGKERLAACLGVTVQEAARFL 709 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + QK+ ++ + + + G GR Sbjct: 710 E-FLQKYKKIKDF---AQATIARCHQTGYVASI-----------------------MGRR 742 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------- 620 + R+ Q R+ +VQ + D+ M++ A Sbjct: 743 RPLPRI---RAQDQQLRAQAERQA------VNFVVQGSAADLCKMAMIHIFAAVATSPTL 793 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMT-----SNPSWAKGLPLKAEGYESKRYR 674 +V +HDE++ E D+ S L M +PLK + + Sbjct: 794 TARLVAQIHDELLFEVEDSQVPEFSALVRGTMESLQHVQALELQLQVPLKVSLSAGRSWG 853 >gi|269977373|ref|ZP_06184346.1| DNA polymerase I [Mobiluncus mulieris 28-1] gi|269934676|gb|EEZ91237.1| DNA polymerase I [Mobiluncus mulieris 28-1] Length = 1040 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 105/674 (15%), Positives = 194/674 (28%), Gaps = 142/674 (21%) Query: 37 FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 F + V + P VL++ + T+V +N+ R L + ++ Sbjct: 469 FREEAVLVTPSTLRPESENVLRDFFAAENRTVVVYNAKALRHAL-RAYGWELS-GTVRDV 526 Query: 97 LVLARSNGLPSAL---KAVGEALK---LSSQKMEEGK------------------ELIAR 132 +L ++ AV E L + + + GK A Sbjct: 527 NLLDYLADPDASRLKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAAGAAAV 586 Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-----FKRLEPLSSKEQELWY 187 + + P+ E +Y + + + ++R+ L E L Sbjct: 587 AASTGSKDISGGIPLPSLPETLVNQAKYALSLLDMLPILTEQVEYRRVGSLLDMELPLSR 646 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 L + + D G VD L +Q + E + + V + ++L+ LF + Sbjct: 647 LLERMEDTGIAVDEGLLQRFDQELSSEVKRTEAAAFEAIGREV-NLSSPKQLQDVLFNQL 705 Query: 248 GLHLEDLTET---TCQRVLSSNK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 GL T+T T + L P + R R+ V + L + + SDG Sbjct: 706 GLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYFRDRSKLLQV--VRNLGDRIASDG 763 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 R+ T A+ TGR S QN+P + Sbjct: 764 RIHTTFGQTVAA-TGRLSSLDPNLQNIPARTDDG-------------------------A 797 Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA L+ AD + IE R++A ++G++ + AF++GEDL+ + A F VAP Sbjct: 798 RIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGLIAAFKSGEDLHRSVAALVFGVAP 857 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 VT QR K L Y L ++ + + ++ Sbjct: 858 EAVTATQRTHVKATSYGLAYG-----LSAFGLAGQLRISQGEAKHLMETYFSRFGAVRDY 912 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + + G R+ + + + + Sbjct: 913 LEHIVSEARRVGYTETMWGR---------RRYLPGLRATNRVVAENARRAA--------- 954 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 L G+ + ++ G + + Sbjct: 955 --------------------------LNAPIQGSAADLMKQAMLRVDAAMAAAGLGSRIL 988 Query: 602 VQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKG 660 +Q +V E + + MTS Sbjct: 989 LQ-------------IHDE-----------LVFEVAPGEVDALRRVVTEAMTSVVE--LR 1022 Query: 661 LPLKAEGYESKRYR 674 +PL+ +R Sbjct: 1023 VPLEVSVGVGANWR 1036 >gi|219815946|gb|ACL37072.1| DNA polymerase I [uncultured bacterium] Length = 283 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 57/383 (14%), Positives = 110/383 (28%), Gaps = 113/383 (29%) Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 GR+ + A TGR S QN+P + E Sbjct: 2 RKTGRVHTSYNQAVA-VTGRLSSNNPNLQNIPVRTERGRE-------------------- 40 Query: 359 IISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R + E L+ AD + IE R++A ++G+ +AF+ G+D++ T A+ + Sbjct: 41 -----IRKAFVPRDENHLLISADYSQIELRIVAAISGDPNMCEAFKQGKDIHTATAAKVY 95 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 N+ A VTK+ R K + G Sbjct: 96 NIEEADVTKEMRYKAKSVN--------------FGIIYG--------------------- 120 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 + A + + + ++++ + + + +NG Sbjct: 121 ---------QGAFGLAENLKITRSEAKEIIDNYKKQFPNIQQYM---DAQMKFAQQNGYV 168 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 GR +D+ + T R Sbjct: 169 ETLW-----------------------GRKRWLKDINSGNF---TVRGYAERNAINMP-- 200 Query: 598 TENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHL 650 +Q + D++ M+ + ++L VHDE+V + + ++ Sbjct: 201 ----IQGTAADMIKLAMIKIHREFKDRGFKSKMILQVHDELVFDAWKDEVDIIKPIIIEC 256 Query: 651 MTSNPSWAKGLPLKAEGYESKRY 673 M S +P AE + Sbjct: 257 MQSALPLPNDVPANAEIGVGVNW 279 >gi|192823947|ref|YP_001994593.1| gp46 [Mycobacterium phage Jasper] gi|190610542|gb|ACE80061.1| gp46 [Mycobacterium phage Jasper] Length = 609 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 114/679 (16%), Positives = 200/679 (29%), Gaps = 168/679 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L +D ET G+ Y +D + L FG + + V AL Sbjct: 36 RILGLDTETT--------GLNIYQDDFGIRLIQFG-NPWESWVLPVERGGVFVGAAATAL 86 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKA 111 + V HN+ F+ V++ + + + T + + L+ Sbjct: 87 Q-KVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEE 145 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + + EE K +AR K D+ + Y D + + Sbjct: 146 LTKFY-IDPVTAEEVKASMARLAKKHKTT--KDKIWALVDLDDPDYELYAGMDTILVSRL 202 Query: 172 FKRLEP--------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 ++ P L E +L + + G+ +DV + L++ + + Sbjct: 203 LGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSEDMLRKAEHYTAVAR 262 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNN 279 V S EKL L TG+ ++ T T ++V L + + + Sbjct: 263 --YAYGVDSVNSTEKLADGL-ERTGVKIKGRTATNKRQVNAELLEALAEEGNALAKAAIE 319 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + + +E +++ R+ + L A RTGR S QNLP Sbjct: 320 AKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTGRMSTSNPSAQNLPSGD------ 372 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 VR C +A G+ + D E RVLA ++G+Q L Sbjct: 373 ----------------------WMVRRCFLADPGQIIASVDYRAQELRVLAALSGDQTML 410 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AFE DL+ T A R IGK+ + Y GGA A Sbjct: 411 RAFEEESDLHQVT---------ADAAGVDRKIGKMANFLVCYGGGAGKLATNA------- 454 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 ++V + + + V Sbjct: 455 -------------------------------------GITFPEAKKVLEVFATTYPGVDT 477 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 L + Q + P+GR L Sbjct: 478 LNKRMQQEAGSA--------------------------GFITTPTGRRLPVDPDR----- 506 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCETP 637 ++Q+ SRD+ ++ +AG+ ++ L VHDE++ P Sbjct: 507 --------------AYSALNYLIQSSSRDVTGAAVLRLHEAGFTPNMRLVVHDEVLLSLP 552 Query: 638 D-TDEFNASMLYHLMTSNP 655 + E + +M Sbjct: 553 EADAEAAVKEVGQIMEQRI 571 >gi|290581196|ref|YP_003485588.1| DNA polymerase I [Streptococcus mutans NN2025] gi|254998095|dbj|BAH88696.1| DNA polymerase I [Streptococcus mutans NN2025] Length = 878 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 92/652 (14%), Positives = 176/652 (26%), Gaps = 139/652 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89 + D + + KEAL ++ VL + +D+ Sbjct: 337 IGLAWGDDQAIYATTDTSLLTHDLFKEALSKP--IKT-----YDFKRGKVLLSHLGIDLL 389 Query: 90 IHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + + S + + L L + GK + Sbjct: 390 TAS-FDSRLAKYLLSTVENNNISTIARLYTDLPLETDDDVYGKGAKRAIPEKNVLLSHLA 448 Query: 145 RNKP--NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 + E + + E L + + G V Sbjct: 449 KKISVLLASEEPMRQKLSANDQLDLLF----------EMELPLANVLAKMEIAGISVRKE 498 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE---T 257 + + ++E L QE+ L + ++L LF + GL L T+ + Sbjct: 499 TLQDMERANEIELQALTQEIYDLAG-EAFNINSPKQLGVILFEKLGLPLSATKKTKTGYS 557 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL +P ++ R ++ + L ++++ DG++ ++TG Sbjct: 558 TAVDVLERLAHRSPIVAKILEYRQ-IAKLQSTYIIGLQDSISFDGKIHTRYLQD-LTQTG 615 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKL 376 R S QN+P +R + + L Sbjct: 616 RLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWKESVL 650 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVM 435 + +D + IE RVLA ++G++ + AF+ G D++ +T R F + P VT + R K + Sbjct: 651 LSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 710 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + Y L ++ A + E + +N+ + + Sbjct: 711 NFGVVYGIS-----DFGLANNLGISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYV 765 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + E R + + + + G A K + L K Sbjct: 766 ETLFHRRRELPDINSR--NFNIRSF---AERTAINSPIQGSAADILKVAMIHLDQALKKG 820 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + ML + Sbjct: 821 DYQSRML----------------------------------------------------L 828 Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 IVL V P+ + L M S +PL A+ Sbjct: 829 QVHDE---IVLEV--------PNAELEAIQKLVKETMESAIE--LSVPLVAD 867 >gi|227875370|ref|ZP_03993512.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|227844275|gb|EEJ54442.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] Length = 1040 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 103/674 (15%), Positives = 193/674 (28%), Gaps = 142/674 (21%) Query: 37 FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 F + V + P VL++ + T+V +N+ R L + ++ Sbjct: 469 FREEAVLVTPSTLRPESENVLRDFFAAENRTVVVYNAKALRHAL-RAYGWELS-GTVQDV 526 Query: 97 LVLARSNGLPSAL---KAVGEALK---LSSQKMEEGK------------------ELIAR 132 +L ++ AV E L + + + GK A Sbjct: 527 NLLDYLADPDASRLKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAAGAAAV 586 Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-----FKRLEPLSSKEQELWY 187 + + P+ E +Y + + + ++R+ L E L Sbjct: 587 TASTGSKDISGGIPLPSLPETLVNQAKYALSLLDMLPILTEQVKYRRVGSLLDMELPLSR 646 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 L + + D G VD L +Q + E + + V + ++L+ LF + Sbjct: 647 LLERMEDTGIAVDEGLLQRFDQELSSEVKRTETAAFEAIGREV-NLSSPKQLQDVLFNQL 705 Query: 248 GLHLEDLTET---TCQRVLSSNK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 GL T+T T + L P + R R+ + + L + + DG Sbjct: 706 GLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYFRDRSKLLQI--VRNLGDRIAPDG 763 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 R+ T A+ TGR S QN+P + Sbjct: 764 RIHTTFGQTVAA-TGRLSSLDPNLQNIPARTDDG-------------------------A 797 Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA L+ AD + IE R++A ++G++ + AF++GEDL+ + A F VAP Sbjct: 798 RIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGLIAAFKSGEDLHRSVAALVFGVAP 857 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 VT QR K L Y L ++ + + ++ Sbjct: 858 EAVTATQRTHVKATSYGLAYG-----LSAFGLAGQLRISQGEAKHLMETYFSRFGAVRDY 912 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + + G R+ + + + + Sbjct: 913 LEHIVSEARRVGYTETMWGR---------RRYLPGLRATNRVVAENARRAA--------- 954 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 L G+ + ++ G + + Sbjct: 955 --------------------------LNAPIQGSAADLMKQAMLRVDAAMAAAGLGSRIL 988 Query: 602 VQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKG 660 +Q +V E + + MTS Sbjct: 989 LQ-------------IHDE-----------LVFEVAPGEVDALRRVVTEAMTSVVE--LR 1022 Query: 661 LPLKAEGYESKRYR 674 +PL+ +R Sbjct: 1023 VPLEVSVGVGANWR 1036 >gi|315604244|ref|ZP_07879310.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str. F0310] gi|315313950|gb|EFU62001.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str. F0310] Length = 896 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 104/664 (15%), Positives = 182/664 (27%), Gaps = 130/664 (19%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 V F D + L P + + EAL +V H++ R L + Sbjct: 342 GEVTRLVFATDKQALVLDPTELTPAQDRAVAEALA--STRLVVHDAKGVRHALASR-GWT 398 Query: 88 IPIHRWICTLVLARSNGL---PSAL-KAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 + T++ A L V L + + + L E Sbjct: 399 L-GEVAFDTMLAAYLAHPDQRSHKLTDVVARILGIEVSEAADEGALFDMDESEEGPTGAE 457 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 R + L + T E K L LS E L L + G VD + Sbjct: 458 MRAGRIAAQLIPL-----AERLRRTLEESKELGLLSDMEMPLARLLGDMEATGIGVDTGV 512 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263 L+ + + K + V + ++L+ LF L T+T Sbjct: 513 LSDLSAELGADVEKARRGAWEAAGREV-NLSSPKQLQELLFDHFALPKTKKTKTGYTTNA 571 Query: 264 SSNKKL-----------TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + L + +R R +++L+ + +D R+ T Sbjct: 572 EALADLWAKTEASGGAGHRFLGYLLAHRDRIKLKQ--MVDSLIATVGADERIHTTFSQ-V 628 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 A+ TGR + QN+P S +R Sbjct: 629 AAATGRLASSDPNLQNIPARSPDGMR-------------------------IRGAFTPGP 663 Query: 373 GK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 G L+ AD + IE R++A ++G++ ++AF +GEDL+ T + F QV+ ++R+ Sbjct: 664 GYASLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVEQVSGEERSR 723 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K L Y L + + E + ++ + Sbjct: 724 IKATSYGLAYG-----LSSYGLAAQLGIAVPEAAALRDRYFERFGKVRDYLEGLVAQARA 778 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + G R R + + +A G A Sbjct: 779 DGYTETMFGR--RRYLPDLRSSN---RQRREMAERAALNAPIQGSAADIV---------- 823 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + +N + G T +VQ Sbjct: 824 ------------------------KIAMMNVAS-----ALANEGLATRLLVQ-------- 846 Query: 612 EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYES 670 +HDE++ E + A L M A +PL Sbjct: 847 ----------------IHDELLLEIAPGEADVAEKLVRERMEGAV--ALSVPLDVAVGVG 888 Query: 671 KRYR 674 ++ Sbjct: 889 ASWQ 892 >gi|311113501|ref|YP_003984723.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931] gi|310944995|gb|ADP41289.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931] Length = 955 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 103/690 (14%), Positives = 200/690 (28%), Gaps = 143/690 (20%) Query: 17 TKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYF 75 TK I E+ + + + + E + + + + + Sbjct: 371 TKTKIRAAEENPVLRGI-ILTSKESSLWINLTNISEDLASAFAEWVSDPQMRKIVMDLKN 429 Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGL----PSAL-----KAVGE-ALKLSSQKMEE 125 +R L + + + + G L + + E L + Q E Sbjct: 430 QRK-LLREYGYKLD-GAIEDPSLSSYMCGYIAAANRRLFAERIEDLAEKYLWIPQQ---E 484 Query: 126 GKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 EL+ E + N + + + + +L+ E Sbjct: 485 FSELVFPEEAPSLFEMPGEENLRYFTQVS--RVIHELARILHFEMQEQGQLKIYEDIELP 542 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS----SSRCLEKLK 240 L Y+ + G V AL + LN + +++ + L G V+ + +++L+ Sbjct: 543 LLYVLADMEQAGIAVSDALLNELNDTFSSRASMAEEQAKVLIGGDVNGEPLNLASVKQLQ 602 Query: 241 TWLFLETGLHLEDLTET-------TCQRVLSSNKKLTPQAIQV--FNNRMRASRSAVLKL 291 T LF GL ++ + +L+ + A + + + Sbjct: 603 TVLFERLGLPKTRKIKSGYSTDSESVADLLTKVSPESDGAQFLIALQAYRDNIKLKQT-V 661 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L +A +DGR+ T Q A+ TGR S QN+P + Sbjct: 662 EGLQKAAVADGRVHTTFQQN-AASTGRLSSTAPNLQNIPIRTDEGRR------------- 707 Query: 352 SDPDPLQIISDCVRSCVIASEG-------KKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +R I + + L+ AD + IE R++ +A ++ ++A+ Sbjct: 708 ------------IRGAFIVAPKILDGVEYEGLLTADYSQIEMRIMVHLAADEKLIQAYAD 755 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GEDL+ + F VAP +VT RA K M L Y + LN+++ Sbjct: 756 GEDLHRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLAYG-----LSRFGLAKQLNISSDEA 810 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + + + F R + + + G R+ + Sbjct: 811 GELRTNYFKRFGRVGRFLRGVVKQAHNDGYTETIYGR---------RRSLPDLDSPNRTR 861 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 +A E+ + Sbjct: 862 REAAERAA----------------------------------------LNAPIQGTAADI 881 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644 ++ + EN L M +L VHDEI+ E + A Sbjct: 882 IKIAMINIHRRLQEEN---------LKTRM----------LLQVHDEIILEVAAGEREAA 922 Query: 645 SML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 + M+ +PL + K + Sbjct: 923 QRILVEEMSEAIE--LKVPLDVQVGWGKSW 950 >gi|219520265|gb|AAI45379.1| Poln protein [Mus musculus] Length = 848 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 92/648 (14%), Positives = 183/648 (28%), Gaps = 167/648 (25%) Query: 67 TIVAHNSY-FERTVLKACFNLD----IPIHRWICTLVLARSNGLPS---ALKAVGEALKL 118 +V N+ F RTVL+ D + + V A + + + K Sbjct: 316 PVVCFNAKDFVRTVLQLYGEDDSWKHVADFVGLDPRVAAWLIDPSDTAPSFEDL--VAKH 373 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 + + K + RN + L Y +T ++ +L+ Sbjct: 374 LEKSIT---------VKPSSTFREASRNTLSQNVCMNLKILY-----DLTMDLCSKLKAY 419 Query: 179 SSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + L + + + VD + ++ +L+QE + Sbjct: 420 GLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAG-EQFL 478 Query: 233 SRCLEKLKTWLFLETGLHLEDLTE-----------TTCQRVLSSNKKLTPQAIQVFNNRM 281 +L+ LF + LHL + +T + +L+S + L P + R Sbjct: 479 IMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQ 538 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G + T G + TGR S Q + + + Sbjct: 539 --------------------GSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPWN 577 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 ++T P R+ ++SEG + AD + IE R+LA ++G+ LK Sbjct: 578 FKGKEEETVTISP----------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKL 627 Query: 402 FET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F+ +D++ T ++ ++ +VT R K + ++ Y Sbjct: 628 FQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYG----------------- 670 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + QK+ ++ + Sbjct: 671 ---------------------------AGKERLAACLGVTVLEATHFLERFLQKYKKIKD 703 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + GR + Sbjct: 704 FAQTVIGQCHSA--------------------------GYVTSILGRRRPLPRICAQDQ- 736 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEI 632 Q R+ +VQ + D+ M+ + A +V +HDE+ Sbjct: 737 --QLRAQAERQA------VNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDEL 788 Query: 633 VCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674 + E DT A+++ +M +PLK + + Sbjct: 789 LFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSWG 836 >gi|284794813|gb|ADB93739.1| gp46 [Mycobacterium phage RedRock] Length = 595 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 113/675 (16%), Positives = 201/675 (29%), Gaps = 168/675 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L +D ET G+ Y++ L FG D + V + ++ A+ Sbjct: 38 LAVDTETT--------GLDIYSDTFECRLVQFGTQD-EAWVVPVELGDVFIEDVRIAIG- 87 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKAVG 113 +V N+ ++ VL CF +++ R + T +LA+ +L+ + Sbjct: 88 ALRKVVLQNASYDLQVLDQCFGIEMEDLWPRVLDTQILAKLVDPRPFEAGGFGHSLEELI 147 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 +S ++ E K+L+A+ + + + +Y D T + K Sbjct: 148 AEF-ISKEQAETVKKLMAKLAQEHKTT--KAKIWATIDLFHPEYLKYAGMDTIFTARVCK 204 Query: 174 RLEPLSS--------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L PL E E+ + I+ +G+ +DV A L+ ++ + + Sbjct: 205 ALTPLVPDVSRGLVAYEHEISEICSYIDRQGFLLDVEYAQELSDKWLADQQVWEAIAFTE 264 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 V E L L E G+ + TET + +L + + Sbjct: 265 YG--VEKVNSTEDLAEGL-EEMGVKITGRTETGKRQVDKTLLEKLVAEGNELATIAQEAK 321 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + + ++ +++ R + L A RT R S P Q LP Sbjct: 322 KLGKWRKTWVQKFLDTRDAEDRCHTFVNPLQA-RTSRMSITGIPAQTLP----------- 369 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 VR C +A EG + D E RVLA ++ + Sbjct: 370 -----------------ASDSTVRRCFLAEEGDVMASIDYQTQELRVLAALSND------ 406 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 Q M + Sbjct: 407 -----------------------------------------------QTMIEAFKTGADL 419 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + NF A + +R A+ + + V+ L Sbjct: 420 HQMTADAAQVTRKVGKMANFLTVYGGGAKTLAEQAKVDFPTAKRTLDAFARTYPGVARLS 479 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 +L ++ P GR L V ++RSY Sbjct: 480 KKLGTEA--------------------------GRKGYIVTPVGRRLP---VDSSRSY-- 508 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETPDT 639 +VQ+ SRD+ ++ KAGY + L +HDEIV P + Sbjct: 509 --------------SALNYMVQSSSRDVTCRALIRLHKAGYTPYLRLPIHDEIVASLPAS 554 Query: 640 DEF-NASMLYHLMTS 653 + A+ + LM Sbjct: 555 EAERAAAHIGQLMAE 569 >gi|332523957|ref|ZP_08400209.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova 176] gi|332315221|gb|EGJ28206.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova 176] Length = 887 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 87/654 (13%), Positives = 181/654 (27%), Gaps = 131/654 (20%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI-VAHNSYFE---RTVLKACFNLDIP 89 AF + + P++L++ L + + ++ VL ++IP Sbjct: 347 AFAWGNQEAIYVS-----QNPELLRQPLFTKVLEKPIF---TYDFKRAKVLLNHLGIEIP 398 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + + +L + E E I ++ Sbjct: 399 EAA-FDARLANYLL-SNVDDNELATIARLHTSISLESDEAI---YGKGVKRAFPAKDLLF 453 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTL 207 A ++ V + ++ + + EL + + G V+ + Sbjct: 454 SHLARKVAVLAASKPVMLE-KLADNGQSDLYYKIELPLANVLAKMEIAGIKVNKQTLMEM 512 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE---TTCQRV 262 + L QE+ L + ++L + LF + L + T+ +T V Sbjct: 513 AEQNRNVIDALTQEIYDLAG-EEFNINSPKQLGSILFEKMQLPLTMTKKTKTGYSTAVDV 571 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L + P ++ + R ++ L L + + DG++ ++TGR S Sbjct: 572 LERLAPIAPIVAKILDYRQ-ITKLQSTYLIGLQDYIMEDGKIHTRYVQD-LTQTGRLSST 629 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD-L 381 QN+P +R S ++++ Sbjct: 630 DPNLQNIPIRMEQGR-------------------------LIRKAFTPSSDDSVLLSSDY 664 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALG 440 + IE RVLA ++G++ + AF D++ T R F + VT + R K + + Sbjct: 665 SQIELRVLAHISGDEHLIAAFNNNADIHTATAMRVFGIEKETDVTPNDRRNAKAVNFGIV 724 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + L ++ ++ E + + + + + + Sbjct: 725 YGIS-----DFGLSNNLGISRKKARDYIDTYFERYPGIKAYMDSVVREAKDKGYVETLFK 779 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 E R + V + + G A K + L D+ Sbjct: 780 RRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALADRAFKAK 834 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 ML + Sbjct: 835 ML----------------------------------------------------LQVHDE 842 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 IVL V P+ + L +M A +PL+A+ + + Sbjct: 843 ---IVLEV--------PNQELVTVRQLVKEIMEDAVDLA--VPLRADENSGQSW 883 >gi|306818684|ref|ZP_07452406.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239] gi|307701025|ref|ZP_07638050.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16] gi|304648370|gb|EFM45673.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239] gi|307614020|gb|EFN93264.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16] Length = 1040 Score = 205 bits (521), Expect = 3e-50, Method: Composition-based stats. Identities = 105/674 (15%), Positives = 194/674 (28%), Gaps = 142/674 (21%) Query: 37 FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 F + V + P VL++ + T+V +N+ R L + ++ Sbjct: 469 FREEAVLVTPSTLRPESENVLRDFFAAENRTVVVYNAKALRHAL-RAYGWELS-GTVQDV 526 Query: 97 LVLARSNGLPSAL---KAVGEALK---LSSQKMEEGK------------------ELIAR 132 +L ++ AV E L + + + GK A Sbjct: 527 NLLDYLADPDASRLKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAAGAAAV 586 Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-----FKRLEPLSSKEQELWY 187 + + P+ E +Y + + + ++R+ L E L Sbjct: 587 TASTGSKDISGGIPLPSLPETLVNQAKYALSLLDMLPILTEQVKYRRVGSLLDMELPLSR 646 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 L + + D G VD L +Q + E + + V + ++L+ LF + Sbjct: 647 LLERMEDTGIAVDEGLLQRFDQELSSEVKRTEAAAFEAIGREV-NLSSPKQLQDVLFNQL 705 Query: 248 GLHLEDLTET---TCQRVLSSNK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 GL T+T T + L P + R R+ V + L + + SDG Sbjct: 706 GLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYFRDRSKLLQV--VRNLGDRIASDG 763 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 R+ T A+ TGR S QN+P + Sbjct: 764 RIHTTFGQTVAA-TGRLSSLDPNLQNIPARTDDG-------------------------A 797 Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA L+ AD + IE R++A ++G++ + AF++GEDL+ + A F VAP Sbjct: 798 RIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGLIAAFKSGEDLHRSVAALVFGVAP 857 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 VT QR K L Y L ++ + + ++ Sbjct: 858 EAVTATQRTHVKATSYGLAYG-----LSAFGLAGQLRISQGEAKHLMETYFSRFGAVRDY 912 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + + G R+ + + + + Sbjct: 913 LEHIVSEARRVGYTETMWGR---------RRYLPGLRATNRVVAENARRAA--------- 954 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 L G+ + ++ G + + Sbjct: 955 --------------------------LNAPIQGSAADLMKQAMLRVDAAMAAAGLGSRIL 988 Query: 602 VQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKG 660 +Q +V E + + MTS Sbjct: 989 LQ-------------IHDE-----------LVFEVAPGEVDALRRVVTEAMTSVVE--LR 1022 Query: 661 LPLKAEGYESKRYR 674 +PL+ +R Sbjct: 1023 VPLEVSVGVGANWR 1036 >gi|303260832|ref|ZP_07346781.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292] gi|302637669|gb|EFL68155.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292] Length = 887 Score = 205 bits (521), Expect = 3e-50, Method: Composition-based stats. Identities = 93/663 (14%), Positives = 180/663 (27%), Gaps = 142/663 (21%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 705 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + L ++ ++ E + +N+ + + Sbjct: 706 AKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD 760 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + E R + + + + G A K + L Sbjct: 761 KGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQLDKA 815 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 ML Sbjct: 816 LVAGGYQTKML------------------------------------------------- 826 Query: 612 EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYES 670 + IVL V P ++ L M +PL A+ E Sbjct: 827 ---LQVHDE---IVLEV--------PKSELVEMKKLVKQTMEEAIQ--LSVPLIADENEG 870 Query: 671 KRY 673 + Sbjct: 871 ATW 873 >gi|322412776|gb|EFY03684.1| DNA polymerase I [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 880 Score = 204 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 88/661 (13%), Positives = 176/661 (26%), Gaps = 143/661 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89 F + + + K+ E + ++ VL + LD+ Sbjct: 339 IGFAWGHGEQIYASTDLSLLSTDLFKKVFEKPI-------ATYDFKRSKVLLSHLGLDL- 390 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + + + ++ L K Sbjct: 391 VAPSYDARLANYLLS------------NVEDNELTTIARLFTDISLEADDSIYGKGVKRA 438 Query: 150 HREAWRLFGEYCKG-----DVTVTR--EIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200 E L G + D ++ + E EL + + G V+ Sbjct: 439 VPEKELLLGHLARKVKVLLDSRAPMVEKLADHDQIALYHEIELPLANILAKMEIEGIKVN 498 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE-- 256 A + + L QE+ + + ++L + LF + L + T+ Sbjct: 499 RATLQDMAEQNKAIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTG 557 Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + P ++ + R ++ + L + + +DG++ ++ Sbjct: 558 YSTAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQ 615 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374 TGR S QN+P +R S E Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFTPSQEDA 650 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433 L+ +D + IE R+LA ++G++ + AF G D++ +T R F + VT + R K Sbjct: 651 VLLSSDYSQIELRLLAHISGDEHLIAAFNEGADIHTSTAMRVFGIEKAEDVTANDRRNAK 710 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y + L + ++ E + + + + + Sbjct: 711 AVNFGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKG 765 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + E R + V + + G A K + L + Sbjct: 766 YVETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDNALQ 820 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 ML Sbjct: 821 AGGFKAKML--------------------------------------------------- 829 Query: 614 MMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672 + IVL V P+T+ L M A +PL+A+ + Sbjct: 830 -LQVHDE---IVLEV--------PNTELAAVKKLVKETMEVAVDLA--VPLRADENAGQS 875 Query: 673 Y 673 + Sbjct: 876 W 876 >gi|203463403|ref|YP_002223985.1| gp44 [Mycobacterium phage Solon] gi|197312590|gb|ACH62944.1| gp44 [Mycobacterium phage Solon] Length = 609 Score = 204 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 113/680 (16%), Positives = 198/680 (29%), Gaps = 170/680 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L +D ET + Y D + L FG + + V AL Sbjct: 36 RILGLDTETTD--------LGIYKPDFGIRLIQFG-NPWESWVLPVERGGVFVGAAVTAL 86 Query: 62 ENTDVTI-VAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALK 110 + V V HN+ F+ V++ + + + T + + L+ Sbjct: 87 Q--KVEKFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLE 144 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + + + EE K +AR K D+ + Y D + Sbjct: 145 ELTKFY-IDPVTAEEVKASMARLAKKHKTT--KDKIWALVDLDDPDYELYAGMDTILVSR 201 Query: 171 IFKRLEP--------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + ++ P L E +L + + G+ +DV + L+ + + Sbjct: 202 LLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVA 261 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFN 278 V S EKL L TG+ ++ T T ++V L + + + Sbjct: 262 R--YAYGVDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAI 318 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + + +E +++ R+ + L A RTGR S QNLP Sbjct: 319 EAKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTGRMSTSNPSAQNLPSGD----- 372 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 VR C +A G+ + D E RVLA ++G+Q Sbjct: 373 -----------------------WMVRRCFLADPGQIIASVDYRAQELRVLAALSGDQTM 409 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF+ DL+ T A R IGK+ + Y GGA A Sbjct: 410 LRAFKEESDLHQVT---------ADAAGVDRKIGKMANFLVCYGGGAGKLATNA------ 454 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++V + + + V Sbjct: 455 --------------------------------------GITFPEAKKVLEVFATTYPGVD 476 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 L + Q + P+GR L Sbjct: 477 TLNKRMQQEAGSA--------------------------GFITTPTGRRLPVDPDR---- 506 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCET 636 ++Q+ SRD+ ++ +AG+ ++ L VHDE++ Sbjct: 507 ---------------AYSALNYLIQSSSRDVTGAAVLRLHEAGFTPNMRLVVHDEVLLSL 551 Query: 637 PD-TDEFNASMLYHLMTSNP 655 P+ E + +M Sbjct: 552 PEADAEAAVKEVGQIMEQRI 571 >gi|303267612|ref|ZP_07353453.1| DNA polymerase I [Streptococcus pneumoniae BS457] gi|302642862|gb|EFL73168.1| DNA polymerase I [Streptococcus pneumoniae BS457] Length = 575 Score = 204 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 93/663 (14%), Positives = 180/663 (27%), Gaps = 142/663 (21%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 32 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 81 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 82 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 131 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 132 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 191 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 192 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 250 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 251 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 308 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 309 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 343 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 344 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 403 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + L ++ ++ E + +N+ + + Sbjct: 404 AKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD 458 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + E R + + + + G A K + L Sbjct: 459 KGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQLDKA 513 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 ML Sbjct: 514 LVAGGYQTKML------------------------------------------------- 524 Query: 612 EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYES 670 + IVL V P ++ L M +PL A+ E Sbjct: 525 ---LQVHDE---IVLEV--------PKSELVEMKKLVKQTMEEAIQ--LSVPLIADENEG 568 Query: 671 KRY 673 + Sbjct: 569 ATW 571 >gi|182683002|ref|YP_001834749.1| DNA polymerase I [Streptococcus pneumoniae CGSP14] gi|182628336|gb|ACB89284.1| DNA polymerase I [Streptococcus pneumoniae CGSP14] Length = 889 Score = 204 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 93/663 (14%), Positives = 180/663 (27%), Gaps = 142/663 (21%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 346 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 395 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 396 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 445 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 446 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 505 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 506 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 564 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 565 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 622 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 623 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 657 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 658 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 717 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + L ++ ++ E + +N+ + + Sbjct: 718 AKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD 772 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + E R + + + + G A K + L Sbjct: 773 KGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQLDKA 827 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 ML Sbjct: 828 LVAGGYQTKML------------------------------------------------- 838 Query: 612 EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYES 670 + IVL V P ++ L M +PL A+ E Sbjct: 839 ---LQVHDE---IVLEV--------PKSELVEMKKLVKQTMEEAIQ--LSVPLIADENEG 882 Query: 671 KRY 673 + Sbjct: 883 ATW 885 >gi|283131335|dbj|BAI63340.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis] Length = 924 Score = 204 bits (518), Expect = 5e-50, Method: Composition-based stats. Identities = 85/660 (12%), Positives = 172/660 (26%), Gaps = 141/660 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87 F + L V + ++ VL + ++ Sbjct: 383 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 433 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + + + + ++ + I+ + R Sbjct: 434 L-VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAV 483 Query: 148 PNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDV 201 P+ K D Q L + + G V+ Sbjct: 484 PDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNR 543 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256 A + + V L QE+ + + ++L + LF + L + T+ Sbjct: 544 ATLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 602 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL + P ++ + R ++ + L + + +DG++ ++T Sbjct: 603 STAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQT 660 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375 GR S QN+P +R S E Sbjct: 661 GRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSQEDAV 695 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKV 434 L+ +D + IE RVLA ++G++ + AF G D++ +T R F + VT + R K Sbjct: 696 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAEDVTANDRRNAKA 755 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + Y + L + ++ E + + + + + Sbjct: 756 VNFGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGY 810 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + E R + V + + G A K + L + Sbjct: 811 VETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDNALQA 865 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 ML Sbjct: 866 GGFKAKML---------------------------------------------------- 873 Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + IVL V P+ + L M + A +PL+A+ + + Sbjct: 874 LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLRADENAGQSW 920 >gi|209558735|ref|YP_002285207.1| DNA polymerase I [Streptococcus pyogenes NZ131] gi|209539936|gb|ACI60512.1| DNA polymerase I [Streptococcus pyogenes NZ131] Length = 880 Score = 204 bits (518), Expect = 6e-50, Method: Composition-based stats. Identities = 84/658 (12%), Positives = 170/658 (25%), Gaps = 137/658 (20%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87 F + L V + ++ VL + ++ Sbjct: 339 IGFAWGHGEQIYVSTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + + + + ++ + E + + + KG Sbjct: 390 V-VAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTV--YGKGTKRAVPDKDVL 445 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDVAL 203 H D Q L + + G V+ A Sbjct: 446 LEHLARKVKVLL----DSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE---TT 258 + + V L QE+ + + ++L + LF + L + T+ +T Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + P ++ + R ++ + L + + +DG++ ++TGR Sbjct: 561 AVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQTGR 618 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377 S QN+P +R S E L+ Sbjct: 619 LSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAVLL 653 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVME 436 +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R K + Sbjct: 654 SSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVN 713 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y + L + ++ E + + + + + + Sbjct: 714 FGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVE 768 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 E R + V + + G A K + L + Sbjct: 769 TLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQAGG 823 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 L + Sbjct: 824 FRAKCL----------------------------------------------------LQ 831 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 IVL V P+ + L M + A +PL + + + Sbjct: 832 VHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|168697886|ref|ZP_02730163.1| hypothetical protein GobsU_00080 [Gemmata obscuriglobus UQM 2246] Length = 1454 Score = 203 bits (517), Expect = 6e-50, Method: Composition-based stats. Identities = 106/697 (15%), Positives = 182/697 (26%), Gaps = 188/697 (26%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65 +D ET +A D V L + L D P L LE Sbjct: 917 LDLETTGL---------SHARD-RVRLLSLATPSGT-FLVDLFALPDPAAALAPLLEALT 965 Query: 66 -VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-----SALKAVG-EALKL 118 V +V N F+ L L R T++ ++ +LK + L L Sbjct: 966 AVEVVGQNLGFDLPFLMR---LGFVPGRVRDTMLASQVLHAGNRTTGHSLKDLAHRHLGL 1022 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 K + Y D + +++RL P Sbjct: 1023 ELDK--------------------GLQTADWSGPLTDAHLGYAARDAELPLALWERLAPE 1062 Query: 179 SSKEQELWYLDQTIN---------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + + + G D + + + + L+ L Sbjct: 1063 LAAAHLTGTAEAEMAALPAVAWAARHGVGFDRPAWDAVAADTEACAARAREHLDELLPNA 1122 Query: 230 -----VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 V++ ++++ +T + + A + AS Sbjct: 1123 GNLFGVTNWNSVDEVTAAFAAAGVALT-----STGDD---ALAAVAHPAAALLREHRAAS 1174 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + + + + DGR+ + +GA +GR S Q LPR Sbjct: 1175 KLSGTYGRGWLRHVADDGRVYAAWKQVGAGASGRMSCKDPNLQQLPRD------------ 1222 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 R C + G+ LV AD + IE R+ A + G++ L A++ Sbjct: 1223 -----------------PRFRRCFVTPPGRVLVKADYSQIELRIAAKITGDKRMLDAYQK 1265 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GEDL+ TT VTK R + K + L Y GAKA A++ Sbjct: 1266 GEDLHTTTARAVLGKT--DVTKADRQLSKSLNFGLLYGMGAKALAAYAASN--------- 1314 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + A+ + + + ++ Sbjct: 1315 -----------------------------FGVALTEGEAADHRDAFFRTYPGLRAWHRKV 1345 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 QT +GR + T Sbjct: 1346 PDGIIQT-----------------------------RTLAGRRR---------VGVGAFT 1367 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDT 639 + VQ D L + VL VHDEIV E + Sbjct: 1368 EK-----------LNTPVQGTGADGLKRALALLWARRNSCPDAFPVLLVHDEIVVECSEE 1416 Query: 640 -DEFNASMLYHLMTSNP-SWAKGLPLKAEGYESKRYR 674 + + + M +P++ E + + Sbjct: 1417 RRDEAIAWVRDAMRDGMAPLIDPVPVEVEVSAGRTWG 1453 >gi|322380583|ref|ZP_08054735.1| DNA polymerase I [Helicobacter suis HS5] gi|321146905|gb|EFX41653.1| DNA polymerase I [Helicobacter suis HS5] Length = 856 Score = 203 bits (517), Expect = 7e-50, Method: Composition-based stats. Identities = 89/631 (14%), Positives = 180/631 (28%), Gaps = 158/631 (25%) Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALKLSSQKME 124 ++A+N E L +N P + +LA L +L A+G+ L + Sbjct: 355 KLIAYNLK-EVCSLLRGYNFPFPTC-YEDIGILAWLENCYLEPSLHALGQYLGEQGYDLA 412 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 ++ A F + R + + Y + +++E++ L E Sbjct: 413 GLEDTEALF-----KASINARLI------LKAYKHYKE---VLSQELWGIAHKLEYPLLE 458 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L Y Q G+ +D+A L Q L+Q ++++ + + + L+ Sbjct: 459 LLYTMQG---HGFLLDIAYFKVLQQEFKENLENLEQSMQNMLSMPL-NVNSSRQWAQVLY 514 Query: 245 LETGLHLE--DLTE---TTCQRVLSSNKKLTP-----------QAIQVFNNRMRASRSAV 288 GL + + +T + L + + ++ N R + Sbjct: 515 EHLGLESKGIKKGKIGLSTNEASLKALQATYAQSEVRGVCVGVLLTKLLNYR-EIFKLQS 573 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + ++ ++ G++ T + + R S QN+P ++ + Sbjct: 574 TYVEPFLKR-HTQGKIHTTFYQNK-TASSRLSSANPNLQNIPIRHDLGRKIARG------ 625 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 IAS G L+ D + IE R+LA + +Q LKAFE ED+ Sbjct: 626 -------------------FIASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFEQKEDI 666 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 ++ T F Sbjct: 667 HLNTATALFG------------------------------------------------NQ 678 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 A A NF + A + + + K + EL Sbjct: 679 AQAKRPIAKAINFGLIYGMGARKLAQTLQISQEEAKAYMERYFNKFPTIKNFLEELK--A 736 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 E + R + Sbjct: 737 RILQEGQVTTLLGHVRRFSFKQAS------------------PKLH-------------- 764 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNAT-----KAGYDIVLTVHDEIVCETPDTDEFN 643 Y + + Q + D++ M+ +A +++ VHDE++ E + + Sbjct: 765 --ADYLREGVNTLFQGSASDLVKLAMLAIYQKYESRADIKMLVQVHDELILEVSEIEARE 822 Query: 644 A-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + LM + + +PL+ + + Sbjct: 823 LQQEIKTLMENI--YPLRVPLECHASIASNW 851 >gi|282721324|gb|ADA83773.1| gp47 [Mycobacterium phage SkiPole] Length = 609 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 113/680 (16%), Positives = 198/680 (29%), Gaps = 170/680 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L +D ET + Y D + L FG + + V AL Sbjct: 36 RILGLDTETTD--------LGIYKPDFGIRLIQFG-NPWESWVLPVERGGVFVGAAVTAL 86 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKA 111 + V HN+ F+ V++ + + + T + + L+ Sbjct: 87 Q-KVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEE 145 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + + EE K +AR K D+ + Y D + + Sbjct: 146 LTKFY-IDPVTAEEVKASMARLAKKHKTT--KDKIWALVDLDDPDYELYAGMDTILVSRL 202 Query: 172 FKRLEP--------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 ++ P L E +L + + G+ +DV + L+ + + Sbjct: 203 LGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVAR 262 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS-----SNKKLTPQAIQVFN 278 V S EKL L TG+ ++ T TT +R ++ + + + Sbjct: 263 --YAYGVDSVNSTEKLADGL-ERTGVKIKGRT-TTGKRQVNAELLEALAEEGNALAKAAI 318 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + + +E +++ R+ + L A RTGR S QNLP Sbjct: 319 EAKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTGRMSTSNPSAQNLPSGD----- 372 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 VR C +A G+ + D E RVLA ++G+Q Sbjct: 373 -----------------------WMVRRCFLADPGQIIASVDYRAQELRVLAALSGDQTM 409 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AFE DL+ T A R IGK+ + Y GGA A Sbjct: 410 LRAFEEESDLHQVT---------ADAAGVDRKIGKMANFLVCYGGGAGKLATNA------ 454 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++V + + + V Sbjct: 455 --------------------------------------GITFPEAKKVLEVFATTYPGVD 476 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 L + Q + P+GR L Sbjct: 477 TLNKRMQQEAGSA--------------------------GFITTPTGRRLPVDPDR---- 506 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCET 636 ++Q+ SRD+ ++ +AG+ ++ L VHDE++ Sbjct: 507 ---------------AYSALNYLIQSSSRDVTGAAVLRLHEAGFTPNMRLVVHDEVLLSL 551 Query: 637 PD-TDEFNASMLYHLMTSNP 655 P+ E + +M Sbjct: 552 PEADAEAAVKEVGQIMEQRI 571 >gi|322378735|ref|ZP_08053164.1| DNA polymerase I (PolA) [Helicobacter suis HS1] gi|321148765|gb|EFX43236.1| DNA polymerase I (PolA) [Helicobacter suis HS1] Length = 856 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 89/631 (14%), Positives = 180/631 (28%), Gaps = 158/631 (25%) Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALKLSSQKME 124 ++A+N E L +N P + +LA L +L A+G+ L + Sbjct: 355 KLIAYNLK-EVCSLLRGYNFPFPTC-YEDIGILAWLENCYLEPSLHALGQYLGEQGYDLA 412 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 ++ A F + R + + Y + +++E++ L E Sbjct: 413 GLEDTEALF-----KASINARLI------LKAYKHYKE---VLSQELWGIAHKLEYPLLE 458 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L Y Q G+ +D+A L Q L+Q ++++ + + + L+ Sbjct: 459 LLYTMQG---HGFLLDIAYFKVLQQEFKENLENLEQSMQNMLSMPL-NVNSSRQWAQVLY 514 Query: 245 LETGLHLE--DLTE---TTCQRVLSSNKKLTP-----------QAIQVFNNRMRASRSAV 288 GL + + +T + L + + ++ N R + Sbjct: 515 EHLGLESKGIKKGKIGLSTNEASLKALQATYAQSEVRGVCVGVLLTKLLNYR-EIFKLQS 573 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + ++ ++ G++ T + + R S QN+P ++ + Sbjct: 574 TYVEPFLKR-HTQGKIHTTFYQNK-TASSRLSSANPNLQNIPIRHDLGRKIARG------ 625 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 IAS G L+ D + IE R+LA + +Q LKAFE ED+ Sbjct: 626 -------------------FIASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFEQKEDI 666 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 ++ T F Sbjct: 667 HLNTATALFG------------------------------------------------NQ 678 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 A A NF + A + + + K + EL Sbjct: 679 AQAKRPIAKAINFGLIYGMGARKLAQTLQISQEEAKAYMERYFNKFPTIKNFLEELK--A 736 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 E + R + Sbjct: 737 RILQEGQVTTLLGHVRRFSFKQAS------------------PKLH-------------- 764 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNAT-----KAGYDIVLTVHDEIVCETPDTDEFN 643 Y + + Q + D++ M+ +A +++ VHDE++ E + + Sbjct: 765 --ADYLREGVNTLFQGSASDLVKLAMLAIYQKYESRADIKMLVQVHDELILEVSEIEARE 822 Query: 644 A-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + LM + + +PL+ + + Sbjct: 823 LQQEIKTLMENI--YPLRVPLECHASIASNW 851 >gi|229817845|ref|ZP_04448127.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM 20098] gi|229784745|gb|EEP20859.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM 20098] Length = 982 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 84/615 (13%), Positives = 168/615 (27%), Gaps = 136/615 (22%) Query: 84 FNLDIPIHRWICTLVLARSNGLPSALKAV----GEALKLSSQKMEEGKELIARFCKGETH 139 +D+P T + + L + ++ E Sbjct: 476 LGVDLP-KPLFDTKLAGYLVQPDFHADTLEQAAARFLDIHVEEKTEEATQGLLDLDDGAD 534 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS------KEQELWYLDQTIN 193 ++ + R + +++ E + ++ + Sbjct: 535 ADADGNQTS-------TLLQHAAIIAELARALAPQIDQREQFGLLQRMELPVSHVLYGME 587 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 +G VD+ ++ + + QE+ G + + ++L LF + GL Sbjct: 588 SQGAKVDMQRLTSMRDTFAAD-ARQAQEIAWDYAGTTVNLQSPKQLGKVLFEDMGLKPTK 646 Query: 254 LTET----TCQRVLSSNKKLTPQAIQ-------VFNNRMRASRSAVLKLNTLVEAMNS-D 301 T+T T L + + +R + + TL++A N D Sbjct: 647 RTKTGGYTTNADALQKLYFTYADDERASGFLGALLRHRETNKLKQI--VATLIDATNPAD 704 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 R+ T + A+ TGR S QN+P + + E Sbjct: 705 ERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE----------------------- 740 Query: 362 DCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +RS + EG + L+ D + +E R++A ++G++ ++AF++G D + + V Sbjct: 741 --IRSAFVPGEGFESLMSCDYSQVELRIMAHLSGDESLIEAFKSGADFHKYVASLVHGVP 798 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 Q+T DQR+ K M L Y L + + + Sbjct: 799 VDQITPDQRSHVKAMSYGLAYG-----LSSYGLAQQLKIRPSEAEALKAKYFATFGKVHD 853 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 F + + G R+ + Sbjct: 854 FLESCVSEARKRGYTETMFGR---------RRYFPALKS--------------------- 883 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 N +L G+ + + R G + Sbjct: 884 --------------TNRAARDAAERAALNAPIQGSAADIMKIAMIRARRALAEAGMKSRI 929 Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAK 659 I+Q +HDE+V E + S L M + Sbjct: 930 ILQ------------------------IHDELVVEIAPGEREQVSALVRDAMENAVH--L 963 Query: 660 GLPLKAEGYESKRYR 674 +PL ++ Sbjct: 964 DVPLDVSTGVGADWQ 978 >gi|149004186|ref|ZP_01828983.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69] gi|147757848|gb|EDK64859.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69] Length = 870 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 93/663 (14%), Positives = 180/663 (27%), Gaps = 142/663 (21%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 327 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 376 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 377 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 426 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 427 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLSFVLAKMEIAGIV 486 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 487 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 545 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 546 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 603 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 604 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 638 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 639 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 698 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + L ++ ++ E + +N+ + + Sbjct: 699 AKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD 753 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + E R + + + + G A K + L Sbjct: 754 KGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQLDKA 808 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 ML Sbjct: 809 LVAGGYQTKML------------------------------------------------- 819 Query: 612 EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYES 670 + IVL V P ++ L M +PL A+ E Sbjct: 820 ---LQVHDE---IVLEV--------PKSELVEMKKLVKQTMEEAIQ--LSVPLIADENEG 863 Query: 671 KRY 673 + Sbjct: 864 ATW 866 >gi|94989670|ref|YP_597770.1| DNA polymerase I [Streptococcus pyogenes MGAS10270] gi|94543178|gb|ABF33226.1| DNA polymerase I [Streptococcus pyogenes MGAS10270] Length = 880 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 84/658 (12%), Positives = 173/658 (26%), Gaps = 137/658 (20%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89 F + + K+ + + ++ VL + +++ Sbjct: 339 IGFAWGHGEQIYASTDLGLLATDSFKQVFQKPI-------ATYDFKRSKVLLSHLGIEL- 390 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + + + ++ + I+ + R P+ Sbjct: 391 VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAVPD 441 Query: 150 HREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDVAL 203 K D Q L + + G V+ A Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE---TT 258 + + V L QE+ + + ++L + LF + L + T+ +T Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + P ++ + R ++ + L + + +DG++ ++TGR Sbjct: 561 AVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQTGR 618 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377 S QN+P +R S E L+ Sbjct: 619 LSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAVLL 653 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVME 436 +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R K + Sbjct: 654 SSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVN 713 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y + L + ++ E + + + + + + Sbjct: 714 FGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVE 768 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 E R + V + + G A K + L + Sbjct: 769 TLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQAGG 823 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 ML + Sbjct: 824 FRAKML----------------------------------------------------LQ 831 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 IVL V P+ + L M + A +PL + + + Sbjct: 832 VHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|148995016|ref|ZP_01823976.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68] gi|147926898|gb|EDK77946.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68] Length = 870 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 93/663 (14%), Positives = 180/663 (27%), Gaps = 142/663 (21%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84 ++ FA+ D + Q K+ LE T + + ++ VL F Sbjct: 327 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 376 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 +D+ + + + Sbjct: 377 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 426 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198 + P + V + ++L EQ L ++ + G Sbjct: 427 KAIPEREKFLEHLACKLAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIV 486 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256 V + ++ KL QE+ L + ++L LF + GL L T+ Sbjct: 487 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 545 Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T VL + P ++ + R ++ + L + + +DG++ Sbjct: 546 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 603 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P +R + E Sbjct: 604 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 638 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 639 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 698 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + L ++ ++ E + +N+ + + Sbjct: 699 AKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD 753 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + E R + + + + G A K + L Sbjct: 754 KGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQLDKA 808 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 ML Sbjct: 809 LVAGGYQTKML------------------------------------------------- 819 Query: 612 EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYES 670 + IVL V P ++ L M +PL A+ E Sbjct: 820 ---LQVHDE---IVLEV--------PKSELVEMKKLVKQTMEEAIQ--LSVPLIADENEG 863 Query: 671 KRY 673 + Sbjct: 864 ATW 866 >gi|9630428|ref|NP_046860.1| DNA polymerase [Mycobacterium phage D29] gi|6015018|sp|O64235|DPOL_BPMD2 RecName: Full=DNA polymerase gi|3172292|gb|AAC18485.1| DNA polymerase [Mycobacterium phage D29] Length = 607 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 109/678 (16%), Positives = 207/678 (30%), Gaps = 158/678 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-PQVLKEALE 62 L +D ET G+ Y+ D L FG + ++ + + EAL Sbjct: 38 LAVDTETT--------GLDIYSADFRCRLVQFGTQTES-WVLPIEDLEMLGREEVHEAL- 87 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKAV 112 + IV N+ ++ VL CF + + + + T +LA+ +L+ + Sbjct: 88 DVLNKIVMQNASYDLQVLDRCFGIKMESLWPKILDTQILAKLVDPRPFGAGGFGHSLEEL 147 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 +S ++ E K L+A+ K + + Y D T I Sbjct: 148 IAEF-ISKEQAENVKGLMAKLAKEHKTT--KAKIWSTIDLYHPEYLTYAGMDTVFTARIC 204 Query: 173 --------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 PL E ++ + I+ RG+ +DV + L E+ + L + Sbjct: 205 SALAPLVPDVSRPLVPYEHKISEICSYIDRRGFLLDVEYSQQLADKWLGEQQVWEAVLLN 264 Query: 225 LTYGLVSSSRC-LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ---AIQVFNNR 280 ++ + + L + + + + + ++ Sbjct: 265 EYGIEKVNATEDVAEAFEELGHKFTAFTDSGKRKVDKGFYADMIAAGGEKAHLAEMVQEA 324 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + + + T ++ +S+ R + L A RT R S P Q LP Sbjct: 325 KKLGKWRTSWVQTFLDTRDSEDRCHTFVNPLQA-RTSRMSITGIPAQTLP---------- 373 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 VR C +A G + D E RVLA ++G++ ++ Sbjct: 374 ------------------ASDWTVRRCFLADPGHVMASIDYQAQELRVLAALSGDRTMIQ 415 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ G DL++ T +F + + Sbjct: 416 AFKDGADLHLMTARAAFGDHITKDDPE--------------------------------- 442 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 ++ NF R A + ++V + + + V+ Sbjct: 443 ------------RKYAKTVNFGRVYGGGANTVAEQTGISIETAKQVVDGFDKAYPGVTRY 490 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 +L ++ N ++ P GR L Sbjct: 491 SRKLANEAKR--------------------------NGYIINPMGRRLPVD--------- 515 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETP- 637 R TY +Q+ SRD+ + ++ +AG+ + L +HDEIV P Sbjct: 516 --------RSRTY--SALNYQIQSTSRDVTCKALIRLHEAGFTPYLRLPIHDEIVASLPA 565 Query: 638 DTDEFNASMLYHLMTSNP 655 + + A + LM Sbjct: 566 EKANWGAREIARLMAEEM 583 >gi|226360133|ref|YP_002777911.1| DNA polymerase I [Rhodococcus opacus B4] gi|226238618|dbj|BAH48966.1| DNA polymerase I [Rhodococcus opacus B4] Length = 914 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 101/663 (15%), Positives = 186/663 (28%), Gaps = 132/663 (19%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNL 86 V A D + L + L + + H + + L Sbjct: 362 GDVTAIAVAAADGEGAYIATASATPEDEKALGDWLADAEQPKALHEAKWAMHAL-RGRGW 420 Query: 87 DIPIHRWICTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECL 142 + T + A L + L+ + E G+E ++ Sbjct: 421 VL-GGLTSDTALAAYLVRPGQRTFNLDDLSLRYLRRELRVEETGQEQLSLL----DDADQ 475 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 D + + + LS E L + I G VD Sbjct: 476 VDAEAAETEILSARAVLDLAAALDTELDNIESTALLSEMELPLLEVLAVIEASGIAVDGT 535 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---C 259 H L E ++ + + + + ++L+ LF E + T+T Sbjct: 536 HLHDLQSRFAAEVSEAAEAAYGVIGKQI-NLGSPKQLQVVLFDELEMPKTKKTKTGYTTD 594 Query: 260 QRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 L + + P + +R A+R V ++ L++ + DGR+ T A+ TG Sbjct: 595 AEALQNLFEKTSHPFLEHLLAHR-DATRLKVT-VDGLLKTVAEDGRIHTTFNQTVAA-TG 651 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KL 376 R S QN+P + + +R + EG L Sbjct: 652 RLSSTEPNLQNIPVRTDAGR-------------------------QIRDGFVVGEGYDSL 686 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R++A ++G+ ++AF TGEDL+ AR+F V +VT + R K M Sbjct: 687 LTADYSQIEMRIMAHVSGDAGLIEAFNTGEDLHSFVGARAFGVPIEEVTPELRRRVKAMS 746 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 L Y L ++T + + + ++ + E + Sbjct: 747 YGLAYG-----LSAFGLAAQLKISTEEAKSQMEAYFARFGGVRDYLHEVVEQARKDGYTS 801 Query: 497 LFIGTACERVKKAWRQKHSRV----SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 G R+ + + +A G A K + + Sbjct: 802 TLYGR---------RRYLPDLTSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQRSL 852 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 ++ L Sbjct: 853 REAG-----------------------------------------------------LKS 859 Query: 613 GM-MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYES 670 M + +VL E+V D++ L M+S +PL Sbjct: 860 RMLLQVHDE---LVL----EVV----DSEREQVEQLVRDKMSSAIE--LSVPLDVSVGTG 906 Query: 671 KRY 673 + + Sbjct: 907 RSW 909 >gi|254550633|ref|ZP_05141080.1| DNA polymerase I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 814 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 72/446 (16%), Positives = 151/446 (33%), Gaps = 62/446 (13%) Query: 95 CTLVLARSNGLPS---ALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 T + A L + +L ++ ++ + + + + Sbjct: 402 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAETIQTTILRA 461 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + + T + E + + + G VD+ + L Sbjct: 462 RAVIDLADALDAELARIDSTALLG-------EMELPVQRVLAKMESAGIAVDLPMLTELQ 514 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSS 265 + + + + + ++L+ LF E G+ T+T T L S Sbjct: 515 SQFGDQIRDAAEAAYGVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQS 573 Query: 266 NKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 P + +R +R V ++ L++A+ +DGR+ T A+ TGR S Sbjct: 574 LFDKTGHPFLQHLLAHR-DVTRLKVT-VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTE 630 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLA 382 QN+P + + +R + +G +L+ AD + Sbjct: 631 PNLQNIPIRTDAGRR-------------------------IRDAFVVGDGYAELMTADYS 665 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++G++ ++AF TGEDL+ +R+F V +VT + R K M L Y Sbjct: 666 QIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYG 725 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + L ++T + ++ + ++ R + E + +G Sbjct: 726 -----LSAYGLSQQLKISTEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVLGR- 779 Query: 503 CERVKKAWRQKHSRVSELWNELHQAF 528 R+ + ++ +A Sbjct: 780 --------RRYLPELDSSNRQVREAA 797 >gi|323128140|gb|ADX25437.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 880 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 84/660 (12%), Positives = 170/660 (25%), Gaps = 141/660 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87 F + L V + ++ VL + ++ Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + + + + ++ + I+ + R Sbjct: 390 L-VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAV 439 Query: 148 PNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDV 201 P+ K D Q L + + G V+ Sbjct: 440 PDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNR 499 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256 A + + L QE+ + + ++L + LF + L + T+ Sbjct: 500 ATLQDMAEQNKAIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 558 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL + P ++ + R ++ + L + + +DG++ ++T Sbjct: 559 STAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILTDGKIHTRYVQD-LTQT 616 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375 GR S QN+P +R S E Sbjct: 617 GRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAV 651 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKV 434 L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R K Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKA 711 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + Y + L + ++ E + + + + + Sbjct: 712 VNFGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGY 766 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + E R + V + + G A K + L + Sbjct: 767 VETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQA 821 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 ML Sbjct: 822 GGFRAKML---------------------------------------------------- 829 Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + IVL V P+ + L M + A +PL + + + Sbjct: 830 LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|170729635|ref|YP_001775068.1| phage-related DNA polymerase [Xylella fastidiosa M12] gi|167964428|gb|ACA11438.1| phage-related DNA polymerase [Xylella fastidiosa M12] Length = 422 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 157/408 (38%), Positives = 200/408 (49%), Gaps = 55/408 (13%) Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEG 373 TGRW+G +F P NLPRP+ S + I + D + + S +RSC+IA Sbjct: 21 TGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLIAPTH 80 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAF------------------------------- 402 KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 81 KKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPITL 140 Query: 403 ---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G+D+Y YA SF +AP VTK+QR IGKV ELALGY GG AF A+ Sbjct: 141 QRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAA 200 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 ++L A P ++A +W + N AC+ K+AWR Sbjct: 201 MYHIDLEAMAEQAAL--PPLLLQEAVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNA 258 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-- 571 H ++ W L A I + + + ++ + L L LPSGR L Y Sbjct: 259 HPAIAAFWQALQFAATDAIGHPETA-----HTCCGITVQYSRAWLRLRLPSGRVLYYAAP 313 Query: 572 --DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 D SY+ T TR+ TR TYGGKL ENI QAVSRD+LA M AGY IVLT Sbjct: 314 RVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLT 373 Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDE++ E D FNA+ L LM + P WA+GLPL AEG+++ RYRK Sbjct: 374 VHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 421 >gi|306828146|ref|ZP_07461409.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782] gi|304429683|gb|EFM32729.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782] Length = 880 Score = 201 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 84/658 (12%), Positives = 173/658 (26%), Gaps = 137/658 (20%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89 F + + K+ + + ++ VL + +++ Sbjct: 339 IGFAWGHGEQIYASTDLGLLATDSFKQVFQKPI-------ATYDFKRSKVLLSHLGIEL- 390 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + + + ++ + I+ + R P+ Sbjct: 391 VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDIVYGKGAKRAVPD 441 Query: 150 HREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDVAL 203 K D Q L + + G V+ A Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE---TT 258 + + V L QE+ + + ++L + LF + L + T+ +T Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + P ++ + R ++ + L + + +DG++ ++TGR Sbjct: 561 AVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQTGR 618 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377 S QN+P +R S E L+ Sbjct: 619 LSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAVLL 653 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVME 436 +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R K + Sbjct: 654 SSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVN 713 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y + L + ++ E + + + + + + Sbjct: 714 FGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVE 768 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 E R + V + + G A K + L + Sbjct: 769 TLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQAGG 823 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 ML + Sbjct: 824 FRAKML----------------------------------------------------LQ 831 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 IVL V P+ + L M + A +PL + + + Sbjct: 832 VHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|15674390|ref|NP_268564.1| DNA polymerase I [Streptococcus pyogenes M1 GAS] gi|13621480|gb|AAK33285.1| DNA-directed DNA polymerase I [Streptococcus pyogenes M1 GAS] Length = 880 Score = 201 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 83/658 (12%), Positives = 172/658 (26%), Gaps = 137/658 (20%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89 F + + K+ + + ++ VL + +++ Sbjct: 339 IGFAWGHGEQIYASTDLGLLATDSFKQVFQKPI-------ATYDFKRSKVLLSHLGIEL- 390 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + + + ++ + I+ + R P+ Sbjct: 391 VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAVPD 441 Query: 150 HREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDVAL 203 K D Q L + + G V+ A Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE---TT 258 + + V L QE+ + + ++L + LF + L + T+ +T Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + P ++ + R ++ + L + + +DG++ ++TGR Sbjct: 561 AVNVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQTGR 618 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377 S QN+P +R S E L+ Sbjct: 619 LSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAVLL 653 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVME 436 +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R K + Sbjct: 654 SSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDRAADVTANDRRNAKAVN 713 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y + L + ++ E + + + + + + Sbjct: 714 FGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVE 768 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 E R + V + + G A K + L + Sbjct: 769 TLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQAGG 823 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R ++ Sbjct: 824 F-------------------------------RAKM---------------------LLQ 831 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 IVL V P+ + L M + A +PL + + Sbjct: 832 VHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGHSW 876 >gi|71275469|ref|ZP_00651755.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71900967|ref|ZP_00683080.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71163769|gb|EAO13485.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71729272|gb|EAO31390.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 422 Score = 201 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 155/408 (37%), Positives = 196/408 (48%), Gaps = 55/408 (13%) Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEG 373 TGRW+G +F P NLPRP+ S + I + D + + S +RSC+IA Sbjct: 21 TGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTH 80 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL------------------------- 408 KKLVVADL+ IE RVLAW+AGE KL AF + Sbjct: 81 KKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITL 140 Query: 409 ---------------YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 Y YA SF +AP VTK QR IGKV ELALGY GG AF A+ Sbjct: 141 QRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAA 200 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 ++L A P ++A +W + N AC+ K+AWR Sbjct: 201 MYHIDLEAMAEQAAL--PPLLLQEAVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNA 258 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-- 571 H ++ W L A I + + + M+ + L + LPSGR L Y Sbjct: 259 HPAIAAFWKALQFAATDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYAAP 313 Query: 572 --DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 D SY+ T TR+ TR TYGGKL ENI QAVSRD+LA M AGY IVLT Sbjct: 314 RVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLT 373 Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDE++ E D FNA+ L LM + P WA+GLPL AEG+++ RYRK Sbjct: 374 VHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 421 >gi|62327214|ref|YP_223952.1| DNA polymerase [Phage phiJL001] gi|50059532|gb|AAT69504.1| DNA polymerase [Phage phiJL001] Length = 631 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 99/705 (14%), Positives = 188/705 (26%), Gaps = 135/705 (19%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-------VMP 54 + D ET L G + + F D P H+ + Sbjct: 27 RRVAFDLETY-DPHLKDTGPSVRTG-GHIAGYGFAIDGGPKHYLPVRHENGDNLDAAQVL 84 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP-IHRWICTLVLARSNGLP---SALK 110 + +K+ + D +V N ++ +D+P + + L+ +L Sbjct: 85 RYIKDQFKTFDGELVGANLGYDLD-WAWAEGIDMPLVKAYRDVLIAEPCINENKFFYSLD 143 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 +V L QK K L+ + + H R G Y + D + Sbjct: 144 SVAGD-WLGEQK---SKTLMIEAARAYGMRKDSELGSYIHLLPARYVGVYGEDDCALPLR 199 Query: 171 IFKRLEPLSSKE---------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 I + E ++ ++ + + RG VD + ER Sbjct: 200 ILELQEKEIEQQGIQAVWDLESKVLPVLVRMRQRGVKVDEDRLMEVEIRATKERRDASDL 259 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV--FNN 279 + +T V ++K L H + + + ++ ++ + Sbjct: 260 ITRVTGVAVGPEDAMKKGILVDALRAAGHQLNADDAVDKHFIARHEGHCEVTAALGRLRK 319 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA----------SRTGRWSGCVFPPQNL 329 + A ++ + M +GR+ + + A +R GR S Q Sbjct: 320 WDTLRKLA---IDPVKNHM-VNGRIHCSFNQMAADKDNGKGTKGARYGRLSCEHVNMQQQ 375 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P I+ R +G D + E R+L Sbjct: 376 PSRDED------------------------IAPIWRRIYRPDDGGLWAALDYSQQEPRML 411 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A A E Y + A + R K++ L L Y G + Sbjct: 412 VHFAEICGMPGASEA-AQKYRDDPDTDNHQMMADMAGISRKEAKIIFLGLCYGMGQEKLC 470 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 + + P + + G R+ + Sbjct: 471 HDLQLPTKIIE-------------------------LKKGPRKGQKMVVAGDEGARLFET 505 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + K V ++ N + + GR Sbjct: 506 FHAKVPFVKQMENLCKDRATE--------------------------RGFITTLLGRRCR 539 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ + +Y T K ++Q S D M+ A +AGY++ L VH Sbjct: 540 FKMGDDGLNYWGTH------------KALNRLIQGSSADQTKAAMVAADEAGYELQLQVH 587 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 DEI A + +M + +P K + + Sbjct: 588 DEIDLTV--ESREQAEKIAEIMRTCVE--INVPSKVDVEVGVSWG 628 >gi|71902823|ref|YP_279626.1| DNA polymerase I [Streptococcus pyogenes MGAS6180] gi|71801918|gb|AAX71271.1| DNA polymerase I [Streptococcus pyogenes MGAS6180] Length = 880 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 85/660 (12%), Positives = 171/660 (25%), Gaps = 141/660 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87 F + L V + ++ VL + ++ Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + + + + ++ + I+ + R Sbjct: 390 L-VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAV 439 Query: 148 PNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDV 201 P+ K D Q L + + G V+ Sbjct: 440 PDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNR 499 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256 A + + V L QE+ + + ++L + LF + L + T+ Sbjct: 500 ATLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 558 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL + P ++ + R ++ + L + + +DG++ ++T Sbjct: 559 STAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQT 616 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375 GR S QN+P +R S E Sbjct: 617 GRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAV 651 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKV 434 L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R K Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKA 711 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + Y + L + ++ E + + + + + Sbjct: 712 VNFGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGY 766 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + E R + V + + G A K + L + Sbjct: 767 VETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQA 821 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 ML Sbjct: 822 GGFRAKML---------------------------------------------------- 829 Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + IVL V P+ + L M + A +PL + + + Sbjct: 830 LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|21909681|ref|NP_663949.1| DNA polymerase I [Streptococcus pyogenes MGAS315] gi|28895061|ref|NP_801411.1| DNA polymerase I [Streptococcus pyogenes SSI-1] gi|21903864|gb|AAM78752.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS315] gi|28810306|dbj|BAC63244.1| putative putative DNA-directed DNA polymerase I [Streptococcus pyogenes SSI-1] Length = 880 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 85/660 (12%), Positives = 171/660 (25%), Gaps = 141/660 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87 F + L V + ++ VL + ++ Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + + + + ++ + I+ + R Sbjct: 390 L-VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAV 439 Query: 148 PNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDV 201 P+ K D Q L + + G V+ Sbjct: 440 PDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNR 499 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256 A + + V L QE+ + + ++L + LF + L + T+ Sbjct: 500 ATLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 558 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL + P ++ + R ++ + L + + +DG++ ++T Sbjct: 559 STAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQT 616 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375 GR S QN+P +R S E Sbjct: 617 GRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAV 651 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKV 434 L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R K Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKA 711 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + Y + L + ++ E + + + + + Sbjct: 712 VNFGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGY 766 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + E R + V + + G A K + L + Sbjct: 767 VETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQA 821 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 ML Sbjct: 822 GGFRAKML---------------------------------------------------- 829 Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + IVL V P+ + L M + A +PL + + + Sbjct: 830 LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|293571802|ref|ZP_06682818.1| DNA polymerase I [Enterococcus faecium E980] gi|291608056|gb|EFF37362.1| DNA polymerase I [Enterococcus faecium E980] Length = 280 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 58/386 (15%), Positives = 108/386 (27%), Gaps = 116/386 (30%) Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + SDG++ ++TGR S QN+P + Sbjct: 1 MIQSDGKVHTRYVQ-TLTQTGRLSSVDPNLQNIPIRLDEGRK------------------ 41 Query: 357 LQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R + E + +D + IE RVLA ++ ++ AF G+D++ +T R Sbjct: 42 -------IRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMR 94 Query: 416 SFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 F + VT + R K + G++ + Sbjct: 95 VFGIEKAEDVTPNMRRQAKAVN--------------FGIVYGISDYGLSQ---------- 130 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 A ++ + +K+ V E + + + Sbjct: 131 --------------------NLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKD---- 166 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 + R D+ + R Sbjct: 167 ----------------------QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINT 201 Query: 595 GKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY 648 +Q + DIL M+ K ++L VHDE+V E P+ + + L Sbjct: 202 P------IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLV 255 Query: 649 -HLMTSNPSWAKGLPLKAEGYESKRY 673 +M S +PL + K + Sbjct: 256 KEVMEQAVS--LHVPLITDSSWGKTW 279 >gi|139473034|ref|YP_001127749.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo] gi|134271280|emb|CAM29496.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo] Length = 880 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 85/660 (12%), Positives = 171/660 (25%), Gaps = 141/660 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87 F + L V + ++ VL + ++ Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + + + + ++ + I+ + R Sbjct: 390 L-VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAV 439 Query: 148 PNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDV 201 P+ K D Q L + + G V+ Sbjct: 440 PDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNR 499 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256 A + + V L QE+ + + ++L + LF + L + T+ Sbjct: 500 ATLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 558 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL + P ++ + R ++ + L + + +DG++ ++T Sbjct: 559 STAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQT 616 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375 GR S QN+P +R S E Sbjct: 617 GRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAV 651 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKV 434 L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R K Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKA 711 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + Y + L + ++ E + + + + + Sbjct: 712 VNFGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGY 766 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + E R + V + + G A K + L + Sbjct: 767 VETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQA 821 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 ML Sbjct: 822 GGFRAKML---------------------------------------------------- 829 Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + IVL V P+ + L M + A +PL + + + Sbjct: 830 LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|94993561|ref|YP_601659.1| DNA polymerase I [Streptococcus pyogenes MGAS10750] gi|94547069|gb|ABF37115.1| DNA polymerase I [Streptococcus pyogenes MGAS10750] Length = 880 Score = 201 bits (510), Expect = 5e-49, Method: Composition-based stats. Identities = 84/660 (12%), Positives = 170/660 (25%), Gaps = 141/660 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87 F + L V + ++ VL + ++ Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + + + + ++ + I+ + R Sbjct: 390 L-VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAV 439 Query: 148 PNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDV 201 P+ K D Q L + + G V+ Sbjct: 440 PDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNR 499 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256 + + V L QE+ + + ++L + LF + L + T+ Sbjct: 500 TTLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 558 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL + P ++ + R ++ + L + + +DG++ ++T Sbjct: 559 STAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQT 616 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375 GR S QN+P +R S E Sbjct: 617 GRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAV 651 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKV 434 L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R K Sbjct: 652 LLSSDYSQIELRVLAHISGDKHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKA 711 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + Y + L + ++ E + + + + + Sbjct: 712 VNFGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGY 766 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + E R + V + + G A K + L + Sbjct: 767 VETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQA 821 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 ML Sbjct: 822 GGFRAKML---------------------------------------------------- 829 Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + IVL V P+ + L M + A +PL + + + Sbjct: 830 LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|9625474|ref|NP_039708.1| predicted 66.2Kd protein [Mycobacterium phage L5] gi|461959|sp|Q05254|DPOL_BPML5 RecName: Full=DNA polymerase gi|579133|emb|CAA79420.1| gene 44 [Mycobacterium phage L5] Length = 595 Score = 200 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 114/677 (16%), Positives = 202/677 (29%), Gaps = 172/677 (25%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L +D ET G+ Y++ L FG D + V + ++ A+ Sbjct: 38 LAVDTETT--------GLDIYSDTFECRLVQFGTQD-EAWVVPVELGDVFIEDVRIAI-- 86 Query: 64 TDVTI--VAHNSYFERTVLKACFNLDIPI--HRWICTLVLARSNGL--------PSALKA 111 V N+ F+ VL CF +++ R + T +LA+ +L+ Sbjct: 87 -GALKRMVLQNASFDLQVLDQCFGIEMEGLWPRVLDTQILAKLVDPRPFEAGGFGHSLEE 145 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + +S + E K+L+A+ + + Y D T + Sbjct: 146 LIAKF-ISEDQAENVKKLMAKLAAEHKTT--KAKIWSTIDLFHPEYLLYAGMDTIFTARV 202 Query: 172 FKRLEPLSS--------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 K L PL E ++ + I+ +G+ +DV + +L + ++ + Sbjct: 203 CKSLTPLVPDVSRSLVPYEHKISEICSYIDRQGFLLDVEYSRSLAEKWLADQEVWEAIAF 262 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 + V E L L E G+ + TET +L + + + Sbjct: 263 TEYG--VEKVNSTEDLAEGL-EEMGVKITGRTETGKRQVNAALLDKLVEDGNELAAIAQE 319 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + + + ++ +S+ R + L A RT R S P Q LP Sbjct: 320 AKKLGKWRKTWVQKFIDTRDSEDRCHTFINPLQA-RTSRMSITGIPAQTLPS-------- 370 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 VR C IA G + D E RVLA ++G+ Sbjct: 371 --------------------SDWIVRRCFIAEPGDVMASVDYQAQELRVLAALSGD---- 406 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 + M Sbjct: 407 -------------------------------------------------RNMIEAFENGA 417 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + P + NF + A +RV +A+ + V Sbjct: 418 DLHQMTADAAQVPRKVGKTANFQKVYGGGAKALAEAVGISIPVAKRVHEAFSATYPGVER 477 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 L +L + NG ++ GR L V ++R+Y Sbjct: 478 LSKKL---AMEAGRNGY-----------------------IVNAMGRRLP---VDSSRTY 508 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETP 637 ++Q+ SRD+ ++ +AGY + L +HDEIV P Sbjct: 509 ----------------SALNYMIQSSSRDVTCRALIRLHEAGYTPYLRLPIHDEIVASLP 552 Query: 638 DTDEF-NASMLYHLMTS 653 ++ A+ + HLM Sbjct: 553 ASEAERAAAHIGHLMQE 569 >gi|229492694|ref|ZP_04386495.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121] gi|229320353|gb|EEN86173.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121] Length = 887 Score = 200 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 101/664 (15%), Positives = 183/664 (27%), Gaps = 134/664 (20%) Query: 28 VCVILFAFGFDDHPVELWDC-VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 V A D P L + L + H + + L Sbjct: 335 GDVTALAIAASDGECAYIAASTATPEDEAALGDWLADASQPKALHEAKWAIHAL-RGRGW 393 Query: 87 DIPIHRWICTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECL 142 + T + A L + LK + G+E ++ E Sbjct: 394 TL-GGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELRAETSGQEQLSLLDDTE----- 447 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR--EIFKRLEPLSSKEQELWYL--DQTINDRGYC 198 + D+ E+ + EL I G Sbjct: 448 ---QLDAEAAETAMLSAQAVLDLAAALDTELESIESKSLLSDMELPLTIELAQIEATGIA 504 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 VD A H L + + + + ++L+ LF E + T+T Sbjct: 505 VDSAHLHDLQSRFASQVADAANSAYEVIDKQI-NLGSPKQLQVVLFEELDMPKTKKTKTG 563 Query: 259 ---CQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 L P + +R A+R V ++ L++A+ DGR+ T A Sbjct: 564 YTTDAEALQGLFDKTGHPFLEHLLAHR-DATRMKVT-VDGLLKAVAEDGRIHTTFNQTVA 621 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGR S QN+P + + E +R + +G Sbjct: 622 A-TGRLSSTDPNLQNIPVRNDAGRE-------------------------IRDGFVVGQG 655 Query: 374 K-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 L+ AD + IE R++A ++G++ ++AF TGEDL+ +R+F V +VT + R Sbjct: 656 FDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELRRRV 715 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K M L Y + L ++T + ++ + ++ + E + Sbjct: 716 KAMSYGLAYG-----LSAYGLASQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKD 770 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 +RR +P + Sbjct: 771 GYTSTLY-----------------------------------------GRRRYLPDLNSD 789 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD-ILA 611 + R V N T + K D L Sbjct: 790 NRQ----------RREVAERAALNAPIQGTAADIIKVAMINVQKAL--------ADAGLK 831 Query: 612 EGM-MNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYE 669 M + +VL E ++ +++ M + +PL Sbjct: 832 SRMLLQVHDE---LVL--------EVVASELEEVTALVKDKMATAIE--LSVPLDVSVGT 878 Query: 670 SKRY 673 + + Sbjct: 879 GRSW 882 >gi|19745349|ref|NP_606485.1| DNA polymerase I [Streptococcus pyogenes MGAS8232] gi|19747453|gb|AAL96984.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS8232] Length = 880 Score = 200 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 85/660 (12%), Positives = 171/660 (25%), Gaps = 141/660 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87 F + L V + ++ VL + ++ Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + + + + ++ + I+ + R Sbjct: 390 L-VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAV 439 Query: 148 PNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDV 201 P+ K D Q L + + G V+ Sbjct: 440 PDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNR 499 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256 A + + V L QE+ + + ++L + LF + L + T+ Sbjct: 500 ATLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 558 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL + P ++ + R ++ + L + + +DG++ ++T Sbjct: 559 STAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQT 616 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375 GR S QN+P +R S E Sbjct: 617 GRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAV 651 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKV 434 L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R K Sbjct: 652 LLGSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKA 711 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + Y + L + ++ E + + + + + Sbjct: 712 VNFGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGY 766 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + E R + V + + G A K + L + Sbjct: 767 VETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQA 821 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 ML Sbjct: 822 GGFRAKML---------------------------------------------------- 829 Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + IVL V P+ + L M + A +PL + + + Sbjct: 830 LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|50913551|ref|YP_059523.1| DNA polymerase I [Streptococcus pyogenes MGAS10394] gi|50902625|gb|AAT86340.1| DNA polymerase I [Streptococcus pyogenes MGAS10394] Length = 880 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 85/660 (12%), Positives = 170/660 (25%), Gaps = 141/660 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87 F + L V + ++ VL + ++ Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + + + + ++ + I+ + R Sbjct: 390 L-VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAV 439 Query: 148 PNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDV 201 P+ K D Q L + + G V+ Sbjct: 440 PDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNR 499 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256 A + + V L QE+ + + ++L + LF + L + T+ Sbjct: 500 ATLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 558 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL + P ++ R ++ + L + + +DG++ ++T Sbjct: 559 STAVDVLERLAPIAPIVAKILAYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQT 616 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375 GR S QN+P +R S E Sbjct: 617 GRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAV 651 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKV 434 L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R K Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKA 711 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + Y + L + ++ E + + + + + Sbjct: 712 VNFGIVYGIS-----DFGLSNNLGITRKQAKTYIDTYFERYPRIKAYMENVVREAKDKGY 766 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + E R + V + + G A K + L + Sbjct: 767 VETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQA 821 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 ML Sbjct: 822 GGFRAKML---------------------------------------------------- 829 Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + IVL V P+ + L M + A +PL + + + Sbjct: 830 LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|71909973|ref|YP_281523.1| DNA polymerase I [Streptococcus pyogenes MGAS5005] gi|94987792|ref|YP_595893.1| DNA polymerase I [Streptococcus pyogenes MGAS9429] gi|71852755|gb|AAZ50778.1| DNA polymerase I [Streptococcus pyogenes MGAS5005] gi|94541300|gb|ABF31349.1| DNA polymerase I [Streptococcus pyogenes MGAS9429] Length = 880 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 84/660 (12%), Positives = 171/660 (25%), Gaps = 141/660 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87 F + L V + ++ VL + ++ Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + + + + ++ + I+ + R Sbjct: 390 L-VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAV 439 Query: 148 PNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDV 201 P+ K D Q L + + G V+ Sbjct: 440 PDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNR 499 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256 A + + V L QE+ + + ++L + LF + L + T+ Sbjct: 500 ATLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 558 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL + P ++ + R ++ + L + + +DG++ ++T Sbjct: 559 STAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQT 616 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375 GR S QN+P +R S E Sbjct: 617 GRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAV 651 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKV 434 L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R K Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKA 711 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + Y + L + ++ E + + + + + Sbjct: 712 VNFGIVYGIS-----DFGLSNNLGITRKQSKSYIDTYFERYPGIKAYMENVVREAKDKGY 766 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + E R + V + + G A K + L + Sbjct: 767 VETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQA 821 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 R + Sbjct: 822 GGF-------------------------------RAKM---------------------L 829 Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + IVL V P+ + L M + A +PL + + + Sbjct: 830 LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|145490164|ref|XP_001431083.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124398185|emb|CAK63685.1| unnamed protein product [Paramecium tetraurelia] Length = 858 Score = 199 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 72/506 (14%), Positives = 131/506 (25%), Gaps = 127/506 (25%) Query: 214 ERTKLDQELESLTYGLVSSSRCLEKL-----------KTWLFLETGLHLEDLTET----T 258 + + +E+E L + ++ L G+ T + Sbjct: 430 RKKSVRKEVEDLPEVKGFQIDNINQIVKENQRTPLKYTEMLIKGLGIEPLSYTPSGMPQA 489 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASR------------------------SAVLKLNTL 294 L + A + + L Sbjct: 490 DYNALKQLAGDVEKQQYGLIYHHFAGKGEPQKGIDACVAINDLLELKSIEVLLHTFIIPL 549 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 +E + GR+ ++ + TGR S N P Sbjct: 550 IELTDPSGRIHTSININ--TETGRLSSRNPNLLNQP------------------------ 583 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 L+ +R IA +G KL+VAD +E RVLA M + + AF G D + T Sbjct: 584 -ALEKDRYKIRKSFIAKKGNKLIVADYGQLELRVLAHMTKCKAMIDAFLKGGDFHSRTVI 642 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 F ++ K EL + + + +A Sbjct: 643 TMFPHIQEEIDK--------GELLIEWDKSKGK------------APAPLVKDKYAAERR 682 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 NF + A + ++ AW + V + + + Sbjct: 683 KAKVLNFSIAYGKTATGFAKDWQCEVKEAQKTIDAWFAQRKEVEQWQYNVRMIAKN---- 738 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 GR ++ + R Sbjct: 739 ----------------------QFFTQTLLGRYRYLEKYFQQQT--RSYINHGLRAAINT 774 Query: 595 GKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDT-DEFNASML 647 +Q + DI+ M+ K GY ++L VHDE++ E P+ + ++ Sbjct: 775 P------IQGGAADIVIAAMVKIYKNQSLKDLGYKLLLQVHDELILEGPEENAQEALKIV 828 Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRY 673 LM + LPL+ + + Sbjct: 829 KELMENPFEIQLELPLEVDAKIGNNW 854 >gi|94991667|ref|YP_599766.1| DNA polymerase I [Streptococcus pyogenes MGAS2096] gi|94545175|gb|ABF35222.1| DNA polymerase I [Streptococcus pyogenes MGAS2096] Length = 806 Score = 199 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 85/660 (12%), Positives = 171/660 (25%), Gaps = 141/660 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87 F + L V + ++ VL + ++ Sbjct: 265 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 315 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + + + + ++ + I+ + R Sbjct: 316 L-VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAV 365 Query: 148 PNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDV 201 P+ K D Q L + + G V+ Sbjct: 366 PDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNR 425 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256 A + + V L QE+ + + ++L + LF + L + T+ Sbjct: 426 ATLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 484 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL + P ++ + R ++ + L + + +DG++ ++T Sbjct: 485 STAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQT 542 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375 GR S QN+P +R S E Sbjct: 543 GRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAV 577 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKV 434 L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R K Sbjct: 578 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKA 637 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + Y + L + ++ E + + + + + Sbjct: 638 VNFGIVYGIS-----DFGLSNNLGITRKQSKSYIDTYFERYPGIKAYMENVVREAKDKGY 692 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + E R + V + + G A K + L + Sbjct: 693 VETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQA 747 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 ML Sbjct: 748 GGFRAKML---------------------------------------------------- 755 Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673 + IVL V P+ + L M + A +PL + + + Sbjct: 756 LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 802 >gi|145510849|ref|XP_001441352.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124408602|emb|CAK73955.1| unnamed protein product [Paramecium tetraurelia] Length = 858 Score = 199 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 85/660 (12%), Positives = 177/660 (26%), Gaps = 141/660 (21%) Query: 57 LKEALENTDVTIVAHNSY---FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 LK+ L + T + +N + + F ++ + ++ +L + Sbjct: 293 LKDLL---NKTKIFYNLKPTDSDYQTKQNEFGIN----SLGD--IYSKYWN---SLGEIL 340 Query: 114 EALK-----LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 L+ + ++ K K + + ++ Sbjct: 341 TELEREGMQVDMDHVKNIKVKAEEDMKQYEQNFIKWVQTTQEGD----VSQFNCSSTQQL 396 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 +++F ++ + + + Y D ++ + V+ +++++ Sbjct: 397 QQLFFAPCKKQQVKKTPQTMKEEEEEDEYLSDGRK-KSVRKEVEDLPEVKGFQIDNIHQI 455 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + + R K L G+ T + L + A Sbjct: 456 VKENQRTPLKYTEMLIKGLGIEPLSYTPSGMPQADYNALKQLAGDVEKQQYGLIYHHFAG 515 Query: 285 R------------------------SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 + + L+E + GR+ ++ + TGR S Sbjct: 516 KGEPQKGIDACIAINDLLELKSIEVLLHTFIIPLIELTDPSGRIHTSININ--TETGRLS 573 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380 N P L+ +R IA +G KL+VAD Sbjct: 574 SRNPNLLNQP-------------------------ALEKDRYKIRKSFIAKKGNKLIVAD 608 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 +E RVLA M + + AF G D + T F ++ K EL + Sbjct: 609 YGQLELRVLAHMTKCKAMIDAFLKGGDFHSRTVITMFPHIQEEIDK--------GELLIE 660 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 + + +A NF + A + Sbjct: 661 WDKSKGK------------APAPLVKDKYAAERRKAKVLNFSIAYGKTATGFAKDWQCEV 708 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 ++ AW + V + + + Sbjct: 709 KEAQKTIDAWFAQRKEVEQWQYNVRMIAKN--------------------------QFFT 742 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK- 619 GR ++ + R +Q + DI+ M+ K Sbjct: 743 QTLLGRYRYLEKYFQQQT--RSYINHGLRAAINTP------IQGGAADIVIAAMVKIYKN 794 Query: 620 -----AGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 GY ++L VHDE++ E P+ + ++ LM + LPL+ + + Sbjct: 795 QSLKDLGYKLLLQVHDELILEGPEENAQEALKIVKELMENPFEIQLELPLEVDAKIGNNW 854 >gi|331090255|ref|ZP_08339142.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401874|gb|EGG81449.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium 3_1_46FAA] Length = 225 Score = 199 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 78/271 (28%), Positives = 106/271 (39%), Gaps = 58/271 (21%) Query: 416 SFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 F V ++TK R GK+ ELALGY G A M Sbjct: 1 MFGVPIEEITKGSPLRQKGKIAELALGYGGAVGALTSMG--------------------- 39 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 A+ + WR + +++ W ++ +A + + Sbjct: 40 -------------------ALAMGLSEDELPGLVSTWRNANPHITQFWWDVDEAAVRAVR 80 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN---------TTT 584 K R + L MLPSGR L Y + Sbjct: 81 ERKETQVGLIR------FQYASGILFAMLPSGRKLAYVKPRMGVNKYGRDGLTYEGVGEN 134 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644 ++ R TYG KL ENIVQ SRDILAE MM KAG+ IV VHDE V E P+ + + Sbjct: 135 KKWERMDTYGPKLVENIVQGTSRDILAEAMMRLNKAGFSIVFHVHDEAVLEVPEG-KSSV 193 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + +M PSW GLPL+A+GYE + Y+K Sbjct: 194 EEVCRIMAEPPSWVHGLPLRADGYECQFYKK 224 >gi|326382644|ref|ZP_08204335.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395] gi|326198763|gb|EGD55946.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395] Length = 897 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 90/637 (14%), Positives = 170/637 (26%), Gaps = 128/637 (20%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVG 113 L + L + H + L + T + A L + Sbjct: 364 LADWLADESRPKAVHEVKWALHAL-RGRGWTL-TGVTSDTALAAYLVRPGQRTFNLDDLA 421 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 K E+G + + A + D + R Sbjct: 422 LRYLRRELKAEDGAGDDGQLSLLDDDADAQRAADQLMLSAQAVAELADTLDTELERIDSS 481 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L E L ++ + G VDV +L + + V + Sbjct: 482 ALLQ--EMELPLSFVLADLEAAGIAVDVDHLDSLEGQFAQRVRDAAESAYEVIGEQV-NL 538 Query: 234 RCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKK--LTPQAIQVFNNRMRASRSAV 288 ++L+ LF + + T+T L+S + P + +R A+R V Sbjct: 539 GSPKQLQAILFDKLDMPKTKKTKTGYTTDADALTSLYEKTEHPFLKHLLEHR-DATRLRV 597 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + L + + D R+ T A+ TGR S QN+P + + Sbjct: 598 T-VEGLQKTVADDQRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTEAGR----------- 644 Query: 349 SITSDPDPLQIISDCVRSCVIASEG-----------KKLVVADLAGIEARVLAWMAGEQW 397 +R + + G + L+ AD + IE R++A ++ ++ Sbjct: 645 --------------QIRHAFVVAPGPVAVGSGNIEFESLMTADYSQIEMRIMAHLSEDEG 690 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF TGEDL+ +R+F V QV R+ K M L Y L Sbjct: 691 LIEAFNTGEDLHNFVGSRAFGVPVDQVDPQMRSRVKAMSYGLAYG-----LSAYGLAAQL 745 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 ++ + + + + ++ + E + Sbjct: 746 GISREEAKQQMEAYFDRFGGVRDYLHRVVEEARRNEYTATLF------------------ 787 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +RR +P + + R + N Sbjct: 788 -----------------------GRRRYLPDLNSDNFQ----------RRQSAERMALNA 814 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 T + K Q SR ++ +V E Sbjct: 815 PIQGTAADIIKVAMINVQKRLRTE-QLSSR-----MLLQVHDE-----------LVIEVA 857 Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++ L M +PL+ + + Sbjct: 858 TGEQAAVEALVREEMGGAID--LSVPLEVSVGYGRSW 892 >gi|224043967|ref|XP_002187783.1| PREDICTED: similar to polymerase (DNA directed), theta [Taeniopygia guttata] Length = 2588 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 85/778 (10%), Positives = 189/778 (24%), Gaps = 215/778 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---------------------LKEALEN 63 ED+ V+ A + ++ L++ L+ Sbjct: 1891 CEDILVVGLAVCWGGKDAYYISLQQTQDQTEISLSLAPPPLDQSLPVTERLNHLQQYLQK 1950 Query: 64 TDVT---IVAHNSYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-GEA 115 ++ ++ L + + + V S + Sbjct: 1951 KTKKERSLI----MYDFIQHYKTLLMACGISLE-GSFEDPKVACWLLDSGSKEHTLHSMV 2005 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD-VTVTREIFKR 174 ++ + + +R A + D + + Sbjct: 2006 TNFLPSELPLLEGVGTGQGVQSLGLSASRDQSGRYRAAIESVLVFNVMDQLHKELQKENL 2065 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + S E Y + G T Q++ + ++++ + L S Sbjct: 2066 TDVFSKVEMPTHYCLSLLELNGIGFSTTAYETQKQVMQAKLSQIETKAYQLAGHS-FSLT 2124 Query: 235 CLEKLKTWLFLETGLH---------------------------LEDLTETTCQRVLSSNK 267 + + LFLE L +T + VL K Sbjct: 2125 SPDDIAEVLFLELKLPQNGDVKVQGNKKTLGYTRRATAKGNRVRLSKQFSTTKDVLEKLK 2184 Query: 268 KLTPQAIQVFNNRMRA-SRSAVLK-LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 L P + R + + V+ L ++ G R + TGR S Sbjct: 2185 TLHPLPGLILEWRRINNAITKVVYPLQREKRLNSALGMERIYPISQTHTATGRVSFTEPN 2244 Query: 326 PQNLPRP-----------------SRSHEELDQIITHLPTSITSDPDPLQIISDCV---- 364 QN+PR + + + P+ L++ + + Sbjct: 2245 IQNVPRDFEIEMPTVVEESPPSQAHGNVNSHAALGGRCRKRSSILPNGLKVQAANISEER 2304 Query: 365 --------RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 R + G ++ AD + +E R+LA ++ + ++A G D++ + A Sbjct: 2305 GIQFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSCDCRLIQALNGGTDVFKSIAAEW 2364 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 + P V + R K + + Y G Sbjct: 2365 KMIDPEAVGERTRQQAKQICYGIIYGIG-------------------------------- 2392 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 + ++++ +++ V + E ++ + Sbjct: 2393 ------------AKSLGEQMGIDENEAANYIESFKSRYTGVQKFLRETVRSCRR------ 2434 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 + + GR + + Y + R+ Sbjct: 2435 --------------------DGFVQTILGRRRYLPAIKDPNPY---SKAHAERQA----- 2466 Query: 597 LTENIVQAVSRDILAEGMMNATKA------------------------------------ 620 VQ + DI+ +N K Sbjct: 2467 -VNTTVQGSAADIVKTATVNIQKRLEAFPSVFKSHGHLESSFQRDKTGRLSRKRNTGMLH 2525 Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M + + L + + Sbjct: 2526 PIRGGFFILQLHDELLYEVAEDDVIQVAQIVKREMENAIK--LSVKLDVKVKIGPSWG 2581 >gi|226306809|ref|YP_002766769.1| DNA polymerase I [Rhodococcus erythropolis PR4] gi|226185926|dbj|BAH34030.1| DNA polymerase I [Rhodococcus erythropolis PR4] Length = 915 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 99/662 (14%), Positives = 180/662 (27%), Gaps = 130/662 (19%) Query: 28 VCVILFAFGFDDHPVELWDC-VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 V A D P L + L + H + + L Sbjct: 363 GDVTALAIAASDGECAYIAASTATPEDEAALGDWLADASQPKALHEAKWAIHAL-RGRGW 421 Query: 87 DIPIHRWICTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECL 142 + T + A L + LK + G+E ++ E Sbjct: 422 TL-GGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELRAETSGQEQLSLLDDTE----- 475 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR--EIFKRLEPLSSKEQELWYL--DQTINDRGYC 198 + D+ E+ + EL I G Sbjct: 476 ---QLDAEAAETAMLSAQAVLDLAAALDTELESIESKSLLSDMELPLTIELAQIEATGIA 532 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 VD A H L + + + + ++L+ LF E + T+T Sbjct: 533 VDSAHLHDLQSRFASQVADAANSAYEVIDKQI-NLGSPKQLQVVLFEELDMPKTKKTKTG 591 Query: 259 ---CQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 L P + +R A+R V ++ L++A+ DGR+ T A Sbjct: 592 YTTDAEALQGLFDKTGHPFLEHLLAHR-DATRMKVT-VDGLLKAVAEDGRIHTTFNQTVA 649 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGR S QN+P + + E +R + +G Sbjct: 650 A-TGRLSSTDPNLQNIPVRNDAGRE-------------------------IRDGFVVGQG 683 Query: 374 K-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 L+ AD + IE R++A ++G++ ++AF TGEDL+ +R+F V +VT + R Sbjct: 684 FDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELRRRV 743 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K M L Y + L ++T + ++ + ++ + E + Sbjct: 744 KAMSYGLAYG-----LSAYGLASQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKD 798 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 G +S + +A G A K + + Sbjct: 799 GYTSTLYGRRRYLP-----DLNSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQKAL 853 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 + L Sbjct: 854 AEAG-----------------------------------------------------LKS 860 Query: 613 GM-MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESK 671 M + +VL V E +++ M + +PL + Sbjct: 861 RMLLQVHDE---LVLEV-------VASELEEVTALVKDKMATAIE--LSVPLDVSVGTGR 908 Query: 672 RY 673 + Sbjct: 909 SW 910 >gi|170782359|ref|YP_001710692.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus] gi|169156928|emb|CAQ02096.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus] Length = 894 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 95/677 (14%), Positives = 185/677 (27%), Gaps = 134/677 (19%) Query: 8 FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVT 67 ET+S G+ +D + F + L + Sbjct: 336 IETQSAASPHGLGLTVETQDGKPVGFGLA-SATEAVTLPWQEGRADYAPFERWLASDA-P 393 Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKME 124 V ++ + ++ L + LV +L A+ + Sbjct: 394 KVMSDAKVQVKAMRRA-GLRVQGLA-FDVLVAGWLLRPGFTDKSLAALVSRYLMEDLPEP 451 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFG-EYCKGDVTVTREIFKRLEPLSSKEQ 183 + +L+ EAW E+ +V R + + E Sbjct: 452 DANQLVPETEALTAPV-----------EAWYTLRVEHALREVLDERTLGV----MVDIEM 496 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 + + RG D A L+ + T L + + + + ++L+ L Sbjct: 497 PTLLVLVEMELRGVATDRAGLAELSAQLQERITGLAERAFAEIGKEI-NLGSPKQLQEVL 555 Query: 244 FLETGLHLEDLTE---TTCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 F + G+ + +T L+ P + +R + + + TL + Sbjct: 556 FDQLGMPKTRANKTGFSTDAGALADLQASNPHPFLDLLLEHRDASKLRQI--IQTLERGI 613 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 D R+ T + TGR S QN+P + Sbjct: 614 GDDERIHTT-YVQTGTTTGRISSNDPNLQNIPVRTEEGRR-------------------- 652 Query: 359 IISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +RS + EG L+ AD + IE R++A ++G+ ++AFE GEDL+ + F Sbjct: 653 -----IRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFEVGEDLHRFVGSSIF 707 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 V PA V+ R K M L Y + L + + + Sbjct: 708 GVEPADVSPAMRTKVKAMSYGLAYG-----LSAFGLSKQLRIPSSEAKQLMTDYFARFGA 762 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 ++ R + E + G + +S L + +A G A Sbjct: 763 VRDYLRQVVEEARAAGYTETIFGRRRP-----FPDLNSPNRVLRDNAERAALNAPIQGSA 817 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 K + + ++ Sbjct: 818 ADIMKIAMIRIEADMRE------------------------------------------- 834 Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPS 656 RD+ + ++ DE++ E + + M Sbjct: 835 ---------RDMASRMLLQVH-----------DELILEVAPGEWDALQAIVTDRMAHAAD 874 Query: 657 WAKGLPLKAEGYESKRY 673 +PL+ + + Sbjct: 875 --LRVPLEVQVGRGDSW 889 >gi|325117229|emb|CBZ52781.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool] Length = 2215 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 93/642 (14%), Positives = 176/642 (27%), Gaps = 193/642 (30%) Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN- 149 TL+ A+ M G +L+ + + Sbjct: 1704 GPIFDTLIAAKVVEAG---------------VMGTGFKLLQVVERFLGVLMDKRMQASDW 1748 Query: 150 -HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI---------NDRGYCV 199 + Y D V + +RL+ +D + G + Sbjct: 1749 SSPHLSQEQLLYAARDAAVMLPLQQRLQRKLEAYDLQEVMDVEMRCLRPVVAMELNGMQI 1808 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR--CLEKLKTWLFLETGLHLE----- 252 + A L + E K + L + + ++ +++ L G+ Sbjct: 1809 EHARWKELEAHLRKEEVKARKRLAAELHVDETTVNFNSQKQMLDAL-RAIGIPSPPPDRP 1867 Query: 253 ----------------------------DLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 L + T L+ P + + R +A+ Sbjct: 1868 ASRSRGARPSAFSEQRGLGFDQPAELEDTLLKDTSDGTLARL-TQYPAVQALRDYR-KAA 1925 Query: 285 RSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++ ++ L + +NS G++ +L GA GR+S Q +PR Sbjct: 1926 KAITTFVDKLPQHINSVTGKIHCSLHQCGAGS-GRFSCDSPNLQQIPR------------ 1972 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIA------SEGKKLVVADLAGIEARVLAWMAGEQW 397 R+C + G K ++AD + IE R+ A +A ++ Sbjct: 1973 -----------------ERRFRACFVPSAKVAGRPG-KFIIADFSQIELRIAADLACDER 2014 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++A++ GEDL+ T + N + ++K R + K + L Y A F+ AS+ Sbjct: 2015 MIEAYQKGEDLHKLTASLILNKPASTLSKADRQLAKAVNFGLIYGMSADRFRGYASS--- 2071 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 A + ++ + Sbjct: 2072 -----------------------------------AYGVQMTPQEARAFHAKYFSSYAGI 2096 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + Q E + R R Y Sbjct: 2097 TRWHQ------RQKAEQPRETRTRAGRRALFDYFAFT----------------------- 2127 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIV 633 K +Q S DI E ++ G +V+ VHDEI+ Sbjct: 2128 ------------------KSLNYPIQGTSADITKESLVRLQDKLAPLGGRLVMCVHDEII 2169 Query: 634 CETPDTDEFN-ASMLYHLMTSNP-SWAKGLPLKAEGYESKRY 673 E P+ +L M + + + +P AEG + + Sbjct: 2170 AEVPEDKAEEGLRILIETMEAAGNKFLRFVPCVAEGAIADSW 2211 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 5/71 (7%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---VMPQVLKEALENTDVTIVA 70 +D+ G+ Y+ V L D P L+D P + ++ L + + V Sbjct: 1530 VDVETTGLDPYS--ARVRLLQLALPDFPTLLFDLFALPVSSPSLRAVRLLLASPRIRKVF 1587 Query: 71 HNSYFERTVLK 81 HN F+ L Sbjct: 1588 HNGKFDLCFLA 1598 >gi|309808033|ref|ZP_07701952.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 01V1-a] gi|308168716|gb|EFO70815.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 01V1-a] Length = 302 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 57/405 (14%), Positives = 115/405 (28%), Gaps = 116/405 (28%) Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + + S+ +N L++ + +DG++ + TGR S QN+P + Sbjct: 1 MDYRQISKIQSTYINGLLDYIQADGKIHTRFLQ-TLTTTGRLSSVEPNLQNIPVKLEEGK 59 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQ 396 +R + + L D + +E RVLA ++ E+ Sbjct: 60 -------------------------QIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEK 94 Query: 397 WKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L+AF+ G D++ T + F ++ +VT R K + Sbjct: 95 NMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVN--------------FGIVY 140 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + + +++ Sbjct: 141 GISD------------------------------YGLAKNLGISRQEAQNFINNYFEQYP 170 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ + A + E G A R + D+ N Sbjct: 171 QIKDYMK---AAVKLAREKGYAETIMH-----------------------RRRLLPDIHN 204 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629 R +Q + DI+ M+ K ++L +H Sbjct: 205 KNF---NIRSFAERTAINSP------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIH 255 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 DE++ + P + L +M +PL A+ + Sbjct: 256 DELLFDVPSEELDLIRTLVPKIMQQAAQ--LDVPLIADANWGHNW 298 >gi|225351885|ref|ZP_03742908.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157132|gb|EEG70471.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 932 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 82/601 (13%), Positives = 171/601 (28%), Gaps = 121/601 (20%) Query: 90 IHRWICTLVLARSNGLPSALKAV--GEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 T + + A L E+ + + + RN Sbjct: 433 PKPLFDTKLAGYLVHPDFHADTLEQAAAHFLDLHIEEQSEGATQGTLDFDEPDDSAQRND 492 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 + G + + ++ L S E + + + G VD+ ++ Sbjct: 493 NQLPRHTAIVGLLARKLADSLDQ-REQFSLLESVEIPVSRVLYGMEHAGAQVDMNRLMSM 551 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVL 263 + + + QE G + + ++L+ LF + GL T+T T L Sbjct: 552 REQLAAD-ANYAQETAWQYAGERVNLQSPKQLQKILFEDMGLKPTKKTKTGSYTTNAAAL 610 Query: 264 SSNKKLT-------PQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASR 315 + + + +R + + + TL++A N SDGR+ T + A+ Sbjct: 611 QVLRDRSCGNDRACQFLDALLLHREKNKLKQI--VQTLIDATNRSDGRIHTTFEQTVAA- 667 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P + E +RS + EG + Sbjct: 668 TGRLSSVDPNLQNIPNRDPAGRE-------------------------IRSAFVPGEGFE 702 Query: 376 -LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 L+ +D + +E R++A ++G++ ++AF +G D + + + V ++T DQR+ K Sbjct: 703 SLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEITPDQRSHVKA 762 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 M L Y + L + + + + + E Sbjct: 763 MSYGLAYG-----LSTYGLSQQLGIKPGEAESLKRQYFATFGKVHEYLESLVSSAREKGY 817 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + G R+ + + A E+ Sbjct: 818 TETIYGR---------RRYFPGLKSPNRAVRDAAERAA---------------------- 846 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 L G+ + + ++ I+ Sbjct: 847 -------------LNAPIQGSAADIMKIAMIRADDALREA---------GLASRII---- 880 Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + +V E + +++ M A +PL + Sbjct: 881 LQIHDE-----------LVVEVAPGEAERVTALVKDAMEHAVDMA--VPLDVSTGIGSDW 927 Query: 674 R 674 + Sbjct: 928 Q 928 >gi|296081899|emb|CBI20904.3| unnamed protein product [Vitis vinifera] Length = 2091 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 92/723 (12%), Positives = 179/723 (24%), Gaps = 191/723 (26%) Query: 29 CVILFAFGFDDHPVELWDCVHD--------------------PVMPQ------------- 55 + A +++ PV + D P + Sbjct: 1422 EIHGIAICWENSPVYYINLPKDLLCSDERKNIYLTMNVSDDKPNILDANHRLEAAKWRWS 1481 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKA-------CFNLDIPIHRWICTLVL-----ARSN 103 + + + DV N + VLK +L++ + T+ L + Sbjct: 1482 KVGKIMGKKDVRKFTWNLKVQIQVLKNPAVSIQKFGSLNLAMR----TMGLELIDNSYLM 1537 Query: 104 GLP----SALKAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP--NHREAWRL 156 P L + ++ L K + E N+ + R Sbjct: 1538 LSPVYIVDGLDMCIVTWILWPDEERSSNPNLEKEVRKRLSSEAAAAANRSGRWKNQTRRA 1597 Query: 157 FGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHT 206 C V TR + L L E L + + G VD+ Sbjct: 1598 AHNGCCRRVAQTRALCSVLWKLLVSEELVEVLLRIEIPLVTILADMEVWGIGVDMEGCIQ 1657 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE---DLTE---TTCQ 260 ++ + L++E L S + L+ L + + + +T + Sbjct: 1658 ARNVLGKKLRHLEKEAYELAGMT-FSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDK 1716 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN----TLVEAMNSDGRLRGTLQFLGASRT 316 L + P + +R A + + L G ++ T Sbjct: 1717 HCLDLLRHEHPIIPVIKEHRTLAKLLNCTLGSICSLARLSLQTQRYTLHGHWLQ-TSTAT 1775 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375 GR S Q + E + + R + S E Sbjct: 1776 GRLSMEEPNLQCV--------EHVVEFKMIKGNKDVCNSEADHYKINARDFFVPSQENWL 1827 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKA-FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 L+ AD + IE R++A + + + + D++ A+ + V +R K Sbjct: 1828 LLTADYSQIELRLMAHFSRDSSLTELLSKPHGDVFTMIAAKWTGKPESVVGYQEREQTKR 1887 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + A Sbjct: 1888 LVYGIL--------------------------------------------YGMGANTLAK 1903 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + E +++R V+ + + + ++R + + Sbjct: 1904 QLECSLGEAEEKIRSFRSSFPGVASWLH--EAVACCCKKGYVKTLKGRKRFLSKIKFGTS 1961 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 K L + R+ +I Q + DI+ M Sbjct: 1962 KEKL---------------------------KARRQA------VNSICQGSAADIIKIAM 1988 Query: 615 MNAT-----------------------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-L 650 +N K I+L VHDE+V E + A +L Sbjct: 1989 INIHSVIAEGVDEPNSSTELPAKFHMLKGRCRIILQVHDELVLEVDPSVMKEAGLLLKMT 2048 Query: 651 MTS 653 M + Sbjct: 2049 MEN 2051 >gi|157786519|ref|YP_001491695.1| Putative DNA polymerase I [Mycobacterium phage Bethlehem] gi|40769458|gb|AAR89764.1| gp43 [Mycobacterium phage Bethlehem] Length = 608 Score = 197 bits (501), Expect = 4e-48, Method: Composition-based stats. Identities = 105/696 (15%), Positives = 191/696 (27%), Gaps = 171/696 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L +D ET + Y D + L FG + + AL Sbjct: 36 RILGLDTETTD--------LGIYKPDFGIRLIQFG-NPWESWVLPVERGGAFVGAAVTAL 86 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKA 111 + V HN+ F+ V++ + + + T + + L+ Sbjct: 87 Q-KVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEE 145 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + + EE K +AR K D+ + Y D + + Sbjct: 146 LTKFY-IDPVTAEEVKASMARLAKKHKTT--KDKIWALVDLDDPDYELYAGMDTILVSRL 202 Query: 172 FKRLEPL--------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 ++ PL E +L + + G+ +DV + L+ + + Sbjct: 203 LGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKAEHYTAVAR 262 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNN 279 V S EKL L TG+ ++ T T ++V L + + + Sbjct: 263 --YAYGVDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAIE 319 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + + +E ++D R+ + L A RTGR S QNLP Sbjct: 320 AKKWGSWEKTWVRNFIERRDADDRVHPGINPLQA-RTGRMSTSNPSAQNLPSGD------ 372 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 VR C +A G+ +V D E RVLA +A + Sbjct: 373 ----------------------WMVRRCFLADPGQLMVSVDYQAQELRVLAALAND---- 406 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 + M Sbjct: 407 -------------------------------------------------RTMIRAFEEEA 417 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + NF + A ++V + + V++ Sbjct: 418 DLHQVTADAAGMDRKVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPGVTD 477 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 L L + N ++ P+GR L Sbjct: 478 LSKSLQREA--------------------------ANLGYVVTPTGRRLPVDPDR----- 506 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV--LTVHDEIVCETP 637 G +VQ+ SRD+ A ++ AG + L +HDE++ P Sbjct: 507 --------------GYAALNYMVQSTSRDVTASAVLRLHDAGLTPMIRLVIHDEVLASVP 552 Query: 638 DTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKR 672 + + A + +M +G+ + + R Sbjct: 553 EAEAEVTAKEIGRIMEQTF---RGVLINTDPEVGGR 585 >gi|192824042|ref|YP_001994504.1| gp46 [Mycobacterium phage KBG] gi|190610272|gb|ACE79794.1| gp46 [Mycobacterium phage KBG] Length = 608 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 113/696 (16%), Positives = 206/696 (29%), Gaps = 171/696 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L +D ET G+ Y + + L FG + + V AL Sbjct: 36 RILGLDTETT--------GLNIYQDAFGIRLIQFG-NPWESWVLPVERGGVFVGAAVTAL 86 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKA 111 + V HN+ F+ V++ + + + T + + L+ Sbjct: 87 Q-KVQRFVIHNAAFDLQVIERMLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEE 145 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + + EE K +AR K D+ + Y D + + Sbjct: 146 LTKFY-IDPVTAEEVKASMARLAKKHKTT--KDKIWALVDLDDPDYELYAGMDTILVSRL 202 Query: 172 FKRLEPL--------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 ++ PL E +L + + G+ +DV + L+ + + Sbjct: 203 LGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVAR 262 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNN 279 V S EKL L TG+ ++ T T ++V L + + + Sbjct: 263 --YAYGVDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAIE 319 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + + +E +++ R+ + L A RT R S QNLP Sbjct: 320 AKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTNNPSAQNLPAGD------ 372 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 VR C +A G+ +V D E RVLA +A ++ + Sbjct: 373 ----------------------WMVRRCFLADSGQLMVSVDYQAQELRVLAALANDRTMI 410 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ DL+ T + R +GK++ A + G A Sbjct: 411 QAFKDNADLHQITA---------DASGVDRKVGKMVNFAYVFGSGPSTIAAQA------- 454 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 +RV + Q + V+ Sbjct: 455 -------------------------------------GITFPEAKRVIAGFEQSYPEVTA 477 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 L L + N ++ P+GR L Sbjct: 478 LSKSLQREA--------------------------ANLGYVITPTGRRLPVDPDR----- 506 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV--LTVHDEIVCETP 637 G +VQ+ SRD+ A ++ +AG + L +HDE++ P Sbjct: 507 --------------GYAALNYMVQSTSRDVTASAVLRLHEAGMTPMIRLVIHDEVLASVP 552 Query: 638 DTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKR 672 + + A + +M +G+ + + R Sbjct: 553 EAEAEVTAKEIGRIMEQTF---RGVLINTDPEVGGR 585 >gi|192824130|ref|YP_001994685.1| gp44 [Mycobacterium phage Lockley] gi|190610360|gb|ACE79881.1| gp44 [Mycobacterium phage Lockley] Length = 608 Score = 197 bits (500), Expect = 7e-48, Method: Composition-based stats. Identities = 104/696 (14%), Positives = 193/696 (27%), Gaps = 171/696 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L +D ET G+ Y +D + L FG + + AL Sbjct: 36 RILGLDTETT--------GLNIYQDDFGIRLIQFG-NPWESWVLPVERGGAFVGAAVTAL 86 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKA 111 + V HN+ F+ V++ + + + T + + L+ Sbjct: 87 Q-KVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEE 145 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + + EE K +AR K D+ + Y D + + Sbjct: 146 LTKFY-IDPVTAEEVKASMARLAKKHKTT--KDKIWALVDLDDPDYELYAGMDTILVSRL 202 Query: 172 FKRLEPL--------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 ++ PL E +L + + G+ +DV + L+ + + Sbjct: 203 LGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVAR 262 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNN 279 V S EKL L TG+ ++ T T ++V L + + + Sbjct: 263 --YAYGVDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAIE 319 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + + +E +++ R+ + L A RT R S QNLP Sbjct: 320 AKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTTSPSAQNLPAND------ 372 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 VR C +A G+ +V D E RVLA +A + Sbjct: 373 ----------------------WMVRRCFLADPGQLMVSVDYQAQELRVLAALAND---- 406 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 + M Sbjct: 407 -------------------------------------------------RTMIRAFEEEA 417 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + NF + A ++V + + V++ Sbjct: 418 DLHQVTADAAGMDRKVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPGVTD 477 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 L L + N ++ P+GR L Sbjct: 478 LSKSLQREA--------------------------ANLGYVVTPTGRRLPVDPDR----- 506 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-YDIV-LTVHDEIVCETP 637 G +VQ+ SRD+ A ++ AG ++ L +HDE++ P Sbjct: 507 --------------GYAALNYMVQSTSRDVTASAVLRLHDAGLAPMIRLVIHDEVLASVP 552 Query: 638 DTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKR 672 + + A + +M +G+ + + R Sbjct: 553 EAEAEVTAKEIGRIMEQTF---RGVLINTDPEVGGR 585 >gi|109392497|ref|YP_655626.1| gp47 [Mycobacterium phage Che12] gi|91980647|gb|ABE67366.1| gp47 [Mycobacterium phage Che12] Length = 595 Score = 197 bits (500), Expect = 7e-48, Method: Composition-based stats. Identities = 106/677 (15%), Positives = 196/677 (28%), Gaps = 168/677 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L +D ET G+ Y++ L FG + +P+ + EAL Sbjct: 38 LAVDTETT--------GLDIYSDTFRCRLVQFGTQS-EAWVLPVELGGGIPENVIEALYE 88 Query: 64 TDVTIVAHNSYFERTVLKA--CFNLDIPIHRWICTLVLARSNGL--------PSALKAVG 113 D V N+ ++ VL ++ + + T +LA+ +L+ + Sbjct: 89 VDKL-VMQNASYDLQVLDQIGYAAMEDLWPKVLDTQILAKLVDPRPFEAGGFGHSLEELI 147 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + ++ E K L+ + K + + Y D T I Sbjct: 148 AEF-IDKEQAENVKGLMTKLAKEHKTT--KAKIWSTIDLFHPEYLTYAGMDTIFTARICS 204 Query: 174 RLEPLSS--------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +L PL E +L + I+ +G+ +DV A L+ E++ D + Sbjct: 205 KLAPLVPDVSRSLVPYEHKLSEICSYIDRKGFLLDVEYAQALSDKWLYEKSVWDAIAFTE 264 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + + ++ L E G+ ++ TE+ +L S + + Sbjct: 265 YG--LENVNSTDQCADAL-EEMGVKIKGRTESGKRQVNDDLLQSLSDDGNELAAIIQEAK 321 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + + + +S+ R + L A RT R S P Q LP Sbjct: 322 KLGKWNKTWVAKFLSVRDSEDRCHTFVNPLQA-RTSRMSITGIPAQTLP----------- 369 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 VR C +A G+ + D E RVLA ++G+ Sbjct: 370 -----------------ASDWIVRRCFVADPGQVMASVDYQTQELRVLAALSGD------ 406 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 Q M + Sbjct: 407 -----------------------------------------------QTMIEAFKTGADL 419 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + NF A + +RV + + + V+ Sbjct: 420 HQMTADASQVVRKVGKMANFLTVYGGGAKTLAEQAHIDFPTAKRVLDGFAKTYPGVARYS 479 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 +L + NG ++ GR L V ++R+Y Sbjct: 480 KKL---AMEAGRNGY-----------------------IVNAMGRRLP---VDSSRTY-- 508 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETPDT 639 ++Q+ SRD+ ++ +AG+ + L +HDE+V P Sbjct: 509 --------------SALNYMIQSSSRDVTCRALIRLHEAGFTPYLRLPIHDEVVASLPAG 554 Query: 640 DEFN-ASMLYHLMTSNP 655 A + LM Sbjct: 555 QAEWGAKEIARLMQEEM 571 >gi|192823857|ref|YP_001994775.1| gp44 [Mycobacterium phage DD5] gi|190610635|gb|ACE80153.1| gp44 [Mycobacterium phage DD5] Length = 608 Score = 196 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 104/696 (14%), Positives = 192/696 (27%), Gaps = 171/696 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L +D ET G+ Y +D + L FG + + AL Sbjct: 36 RILGLDTETT--------GLNIYQDDFGIRLIQFG-NPWESWVLPVERGGAFVGAAVTAL 86 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKA 111 + V HN+ F+ V++ + + + T + + L+ Sbjct: 87 Q-KVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEE 145 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + + EE K +AR K D+ + Y D + + Sbjct: 146 LTKFY-IDPVTAEEVKASMARLAKKHKTT--KDKIWALVDLDDPDYELYAGMDTILVSRL 202 Query: 172 FKRLEPL--------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 ++ PL E +L + + G+ +DV + L+ + + Sbjct: 203 LGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVAR 262 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNN 279 V S EKL L TG+ ++ T T ++V L + + + Sbjct: 263 --YAYGVDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAIE 319 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + + +E +++ R+ + L A RT R S QNLP Sbjct: 320 AKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTTSPSAQNLPAND------ 372 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 VR C +A G+ +V D E RVLA +A + Sbjct: 373 ----------------------WMVRRCFLADPGQLMVSVDYQAQELRVLAALAND---- 406 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 + M Sbjct: 407 -------------------------------------------------RTMIRAFEEEA 417 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + NF + A ++V + + V++ Sbjct: 418 DLHQVTADAAGMDRKVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPGVTD 477 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 L L + N ++ P+GR L Sbjct: 478 LSKSLQREA--------------------------ANLGYVVTPTGRRLPVDPDR----- 506 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV--LTVHDEIVCETP 637 G +VQ+ SRD+ A ++ AG + L +HDE++ P Sbjct: 507 --------------GYAALNYMVQSTSRDVTASAVLRLHDAGLTPMIRLVIHDEVLASVP 552 Query: 638 DTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKR 672 + + A + +M +G+ + + R Sbjct: 553 EAEAEVTAKEIGRIMEQTF---RGVLINTDPEVGGR 585 >gi|297517722|ref|ZP_06936108.1| DNA polymerase I [Escherichia coli OP50] Length = 263 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 55/365 (15%), Positives = 103/365 (28%), Gaps = 113/365 (30%) Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P + +R IA E Sbjct: 1 TGRLSSTDPNLQNIPVRNEEGRR-------------------------IRQAFIAPEDYV 35 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 +V AD + IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + Sbjct: 36 IVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAI 95 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 G++ A + Sbjct: 96 NF--------------GLIYGMS------------------------------AFGLARQ 111 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 ++ + +++ V E ++ Sbjct: 112 LNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKE------------------------- 146 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + GR L D+ ++ + +Q + DI+ M+ Sbjct: 147 -QGYVETLDGRRLYLPDIKSSNGARRAAAER---------AAINAPMQGTAADIIKRAMI 196 Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGY 668 +++ VHDE+V E D + ++ LM + +PL E Sbjct: 197 AVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVG 254 Query: 669 ESKRY 673 + + Sbjct: 255 SGENW 259 >gi|221506528|gb|EEE32145.1| DNA polymerase I, putative [Toxoplasma gondii VEG] Length = 704 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 99/640 (15%), Positives = 177/640 (27%), Gaps = 190/640 (29%) Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN- 149 TL+ A+ M G +L+ + + Sbjct: 194 GPLFDTLIAAKVVEAG---------------VMRTGFKLLQVVERFLGVLMDKRMQASDW 238 Query: 150 -HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI---------NDRGYCV 199 + Y D V + +RL+ +D + G + Sbjct: 239 SSPHLSQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNGMQI 298 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR--CLEKLKTWL-------------- 243 D A L + E K Q L + + ++ +++ L Sbjct: 299 DHARWKELEAHLRREEEKARQRLAAELHVDENTVNFNSQKQMLDALRAIGIPAPPPDRPE 358 Query: 244 ---------FLETGLHLED--------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 F E L + L + T L+ P + + R +A+++ Sbjct: 359 SRTRGSRFSFSELPLGFDKNAAEVEDQLLKDTSDGTLARLS-QFPAVQALRDYR-KAAKA 416 Query: 287 AVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 ++ L E +NS G++ +L GA GR+S Q +PR Sbjct: 417 ITTFVDKLPEHINSVTGKIHCSLHQCGAGS-GRFSCDSPNLQQIPR-------------- 461 Query: 346 LPTSITSDPDPLQIISDCVRSCVIA------SEGKKLVVADLAGIEARVLAWMAGEQWKL 399 R+C + G K ++AD + IE R+ A +A ++ + Sbjct: 462 ---------------ERRFRACFVPSKTVAGRPG-KFIIADFSQIELRIAADLACDERMI 505 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +A+ GEDL+ T + N P+ ++K R + K + L Y A F+ AS+ Sbjct: 506 EAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFRGYASS----- 560 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + ++ Sbjct: 561 ---------------------------------AYGVEMSLQEARDFHAKYFSSYPGITR 587 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 Q E + R R Y Sbjct: 588 WHR------RQKAEQPRETRTRAGRRALFEYFAFT------------------------- 616 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCE 635 K +Q S DI E ++ G +V+ VHDEI+ E Sbjct: 617 ----------------KSLNYPIQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEIIAE 660 Query: 636 TPDTDEFN-ASMLYHLMTSNP-SWAKGLPLKAEGYESKRY 673 P+ +L M + + + +P AEG + + Sbjct: 661 VPEEKAEEGLRVLIDTMEAAGNKYLRFVPCVAEGAIADSW 700 Score = 51.7 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 13/79 (16%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE---ALE 62 +D ET + + L D P L+D PV L+ L Sbjct: 3 VDVETTGLDPFS----------ARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLA 52 Query: 63 NTDVTIVAHNSYFERTVLK 81 + + V HN F+ L Sbjct: 53 SPRIRKVFHNGQFDLCFLA 71 >gi|221486831|gb|EEE25077.1| DNA polymerase I, putative [Toxoplasma gondii GT1] Length = 704 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 99/640 (15%), Positives = 177/640 (27%), Gaps = 190/640 (29%) Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN- 149 TL+ A+ M G +L+ + + Sbjct: 194 GPLFDTLIAAKVVEAG---------------VMRTGFKLLQVVERFLGVLMDKRMQASDW 238 Query: 150 -HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI---------NDRGYCV 199 + Y D V + +RL+ +D + G + Sbjct: 239 SSPHLSQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNGMQI 298 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR--CLEKLKTWL-------------- 243 D A L + E K Q L + + ++ +++ L Sbjct: 299 DHARWKELEAHLRREEEKARQRLAAELHVDENTVNFNSQKQMLDALRAIGIPAPPPDRPE 358 Query: 244 ---------FLETGLHLED--------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 F E L + L + T L+ P + + R +A+++ Sbjct: 359 SRTRGSRFSFSELPLGFDKNAAEVEDQLLKDTSDGTLARLS-QFPAVQALRDYR-KAAKA 416 Query: 287 AVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 ++ L E +NS G++ +L GA GR+S Q +PR Sbjct: 417 ITTFVDKLPEHINSVTGKIHCSLHQCGAGS-GRFSCDSPNLQQIPR-------------- 461 Query: 346 LPTSITSDPDPLQIISDCVRSCVIA------SEGKKLVVADLAGIEARVLAWMAGEQWKL 399 R+C + G K ++AD + IE R+ A +A ++ + Sbjct: 462 ---------------ERRFRACFVPSKTVAGRPG-KFIIADFSQIELRIAADLACDERMI 505 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +A+ GEDL+ T + N P+ ++K R + K + L Y A F+ AS+ Sbjct: 506 EAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFRGYASS----- 560 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + ++ Sbjct: 561 ---------------------------------AYGVEMSLQEARDFHAKYFSSYPGITR 587 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 Q E + R R Y Sbjct: 588 WHR------RQKAEQPRETRTRAGRRALFEYFAFT------------------------- 616 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCE 635 K +Q S DI E ++ G +V+ VHDEI+ E Sbjct: 617 ----------------KSLNYPIQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEIIAE 660 Query: 636 TPDTDEFN-ASMLYHLMTSNP-SWAKGLPLKAEGYESKRY 673 P+ +L M + + + +P AEG + + Sbjct: 661 VPEEKAEEGLRVLIDTMEAAGNKYLRFVPCVAEGAIADSW 700 Score = 51.7 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 13/79 (16%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE---ALE 62 +D ET + + L D P L+D PV L+ L Sbjct: 3 VDVETTGLDPFS----------ARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLA 52 Query: 63 NTDVTIVAHNSYFERTVLK 81 + + V HN F+ L Sbjct: 53 SPRIRKVFHNGQFDLCFLA 71 >gi|237832033|ref|XP_002365314.1| DNA polymerase I, putative [Toxoplasma gondii ME49] gi|211962978|gb|EEA98173.1| DNA polymerase I, putative [Toxoplasma gondii ME49] Length = 704 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 99/640 (15%), Positives = 177/640 (27%), Gaps = 190/640 (29%) Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN- 149 TL+ A+ M G +L+ + + Sbjct: 194 GPLFDTLIAAKVVEAG---------------VMRTGFKLLQVVERFLGVLMDKRMQASDW 238 Query: 150 -HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI---------NDRGYCV 199 + Y D V + +RL+ +D + G + Sbjct: 239 SSPHLSQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNGMQI 298 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR--CLEKLKTWL-------------- 243 D A L + E K Q L + + ++ +++ L Sbjct: 299 DHARWKELEAHLRREEEKARQRLAAELHVDENTVNFNSQKQMLDALRAIGIPAPPPDRPE 358 Query: 244 ---------FLETGLHLED--------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 F E L + L + T L+ P + + R +A+++ Sbjct: 359 SRTRGSRFSFSELPLGFDKNAAEVEDQLLKDTSDGTLARLS-QFPAVQALRDYR-KAAKA 416 Query: 287 AVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 ++ L E +NS G++ +L GA GR+S Q +PR Sbjct: 417 ITTFVDKLPEHINSVTGKIHCSLHQCGAGS-GRFSCDSPNLQQIPR-------------- 461 Query: 346 LPTSITSDPDPLQIISDCVRSCVIA------SEGKKLVVADLAGIEARVLAWMAGEQWKL 399 R+C + G K ++AD + IE R+ A +A ++ + Sbjct: 462 ---------------ERRFRACFVPSKTVAGRPG-KFIIADFSQIELRIAADLACDERMI 505 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +A+ GEDL+ T + N P+ ++K R + K + L Y A F+ AS+ Sbjct: 506 EAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFRGYASS----- 560 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + ++ Sbjct: 561 ---------------------------------AYGVEMSLQEARDFHAKYFSSYPGITR 587 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 Q E + R R Y Sbjct: 588 WHR------RQKAEQPRETRTRAGRRALFEYFAFT------------------------- 616 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCE 635 K +Q S DI E ++ G +V+ VHDEI+ E Sbjct: 617 ----------------KSLNYPIQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEIIAE 660 Query: 636 TPDTDEFN-ASMLYHLMTSNP-SWAKGLPLKAEGYESKRY 673 P+ +L M + + + +P AEG + + Sbjct: 661 VPEEKAEEGLRVLIDTMEAAGNKYLRFVPCVAEGAIADSW 700 Score = 51.7 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 13/79 (16%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE---ALE 62 +D ET + + L D P L+D PV L+ L Sbjct: 3 VDVETTGLDPFS----------ARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLA 52 Query: 63 NTDVTIVAHNSYFERTVLK 81 + + V HN F+ L Sbjct: 53 SPRIRKVFHNGQFDLCFLA 71 >gi|298706211|emb|CBJ29252.1| DNA polymerase [Ectocarpus siliculosus] Length = 1219 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 83/547 (15%), Positives = 142/547 (25%), Gaps = 137/547 (25%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E + + G + + L + G + + Sbjct: 744 CEQVEMPAIPVLAGMEVSGVVFLPERVTRFSDALGNHLEGLKRTAVKAVGGRDFNLASPD 803 Query: 238 KLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++ LF L + +T VL + + R ++ ++ Sbjct: 804 QVADVLFKHLKLPSPPVKAGSVHASTSAEVLEGLQGKHAVVAPILEFR-GVNKYKTTYVD 862 Query: 293 TLVEAMNSDG---------------RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 L E R+ T ++RTGR S Q +P+ S Sbjct: 863 KLAERALGAAAAESAVPASQGAGAARIHATWNQ-TSARTGRLSCSRPNLQQMPKGSDP-- 919 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + VR A+ L+ AD + IE RVLA + Sbjct: 920 ------------------LAGVEGVNVRDAFSATRSFTLMAADYSQIEMRVLADACRDPG 961 Query: 398 KLK------------AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 A G D+Y A+ F V+ ++R KV+ L + Y G Sbjct: 962 LRNLFATLGGTNDAGASTGGGDVYRKLAAQVFAKEEHGVSDEERNRAKVVCLGITYGMGT 1021 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 L + S + + E F + GT C Sbjct: 1022 PQV-----AKKLEITESQAQGLVRSFLKAFPGIEPFMAATRR-----------YGTPCRH 1065 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 R ENG +G Sbjct: 1066 QISQRR------------------FARENGYVCTL-----------------------TG 1084 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620 R ++ N+R+ Q R+ ++VQ + DI+ M+ + Sbjct: 1085 RRRHLPEINNSRNA--AAKAQAERQA------VNSVVQGTAADIMKTAMVLVARRLDAWR 1136 Query: 621 -----GY---DIVLTVHDEIVCETP--DTDEFNAS-MLYHLMTSNPSWAKGL--PLKAEG 667 G +++ +HDE+V E P + D +L M G+ PL Sbjct: 1137 SSLDEGLDCPRLIMQIHDELVLECPACEEDLERLKGLLADCMEVEAPAVLGIKCPLTVNM 1196 Query: 668 YESKRYR 674 + Sbjct: 1197 LVGMSWG 1203 >gi|224590780|gb|ACN59873.1| plastid replication-repair enzyme [Toxoplasma gondii] Length = 2579 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 99/640 (15%), Positives = 177/640 (27%), Gaps = 190/640 (29%) Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN- 149 TL+ A+ M G +L+ + + Sbjct: 2069 GPLFDTLIAAKVVEAG---------------VMRTGFKLLQVVERFLGVLMDKRMQASDW 2113 Query: 150 -HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI---------NDRGYCV 199 + Y D V + +RL+ +D + G + Sbjct: 2114 SSPHLSQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNGMQI 2173 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR--CLEKLKTWL-------------- 243 D A L + E K Q L + + ++ +++ L Sbjct: 2174 DHARWKELEAHLRREEEKARQRLAAELHVDENTVNFNSQKQMLDALRAIGIPAPPPDRPE 2233 Query: 244 ---------FLETGLHLED--------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 F E L + L + T L+ P + + R +A+++ Sbjct: 2234 SRTRGSRFSFSELPLGFDKNAAEVEDQLLKDTSDGTLARLS-QFPAVQALRDYR-KAAKA 2291 Query: 287 AVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 ++ L E +NS G++ +L GA GR+S Q +PR Sbjct: 2292 ITTFVDKLPEHINSVTGKIHCSLHQCGAGS-GRFSCDSPNLQQIPR-------------- 2336 Query: 346 LPTSITSDPDPLQIISDCVRSCVIA------SEGKKLVVADLAGIEARVLAWMAGEQWKL 399 R+C + G K ++AD + IE R+ A +A ++ + Sbjct: 2337 ---------------ERRFRACFVPSKTVAGRPG-KFIIADFSQIELRIAADLACDERMI 2380 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +A+ GEDL+ T + N P+ ++K R + K + L Y A F+ AS+ Sbjct: 2381 EAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFRGYASS----- 2435 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + ++ Sbjct: 2436 ---------------------------------AYGVEMSLQEARDFHAKYFSSYPGITR 2462 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 Q E + R R Y Sbjct: 2463 WHR------RQKAEQPRETRTRAGRRALFEYFAFT------------------------- 2491 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCE 635 K +Q S DI E ++ G +V+ VHDEI+ E Sbjct: 2492 ----------------KSLNYPIQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEIIAE 2535 Query: 636 TPDTDEFN-ASMLYHLMTSNP-SWAKGLPLKAEGYESKRY 673 P+ +L M + + + +P AEG + + Sbjct: 2536 VPEEKAEEGLRVLIDTMEAAGNKYLRFVPCVAEGAIADSW 2575 Score = 51.7 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 13/79 (16%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE---ALE 62 +D ET + + L D P L+D PV L+ L Sbjct: 1878 VDVETTGLDPFS----------ARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLA 1927 Query: 63 NTDVTIVAHNSYFERTVLK 81 + + V HN F+ L Sbjct: 1928 SPRIRKVFHNGQFDLCFLA 1946 >gi|224282847|ref|ZP_03646169.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171] gi|313140006|ref|ZP_07802199.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171] gi|313132516|gb|EFR50133.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171] Length = 943 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 81/634 (12%), Positives = 169/634 (26%), Gaps = 126/634 (19%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV---- 112 L+ L+ IV H + +L + LD+ W T + ++ Sbjct: 416 LQRFLDGHADRIVVHGYKEQSHILAS-LGLDLA-EPWFDTKLAGYLVQPDYHADSLEQAA 473 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 L+L ++ + K D + Sbjct: 474 SHFLQLQLDNADDVAQGQLDLSGDVDPADQRKDLLHMAMVRALADMLAAKIDEREQFRLL 533 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + +E + ++ + G VD + ++ + V + Sbjct: 534 QSIE------LPVSHVLFGMEQVGASVDFMRLTEMRDRFAIDARDAQETAWQFAGSRV-N 586 Query: 233 SRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK-------KLTPQAIQVFNNRM 281 + ++L+ LF + GL T++ T L + + +R Sbjct: 587 LQSPKQLQAVLFDDMGLKPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRE 646 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + +L++A+N D T + TGR S QN+P + E Sbjct: 647 TNKLKQI--VQSLIDAVNPDDGRIHTTFEQTVAATGRLSSVDPNLQNIPNRNAEGRE--- 701 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLK 400 +RS + EG + L+ +D + +E R++A ++G+ ++ Sbjct: 702 ----------------------IRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIE 739 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +G D + + + + +T DQR K M L Y L ++ Sbjct: 740 AFRSGADFHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAYG-----LSTYGLAQQLKIS 794 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + E + G R+ + Sbjct: 795 PGEADRLKSQYFATFGKVHEYLESLVAGAREKGYTETMFGR---------RRYFPGLQSP 845 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + A E R + + + + + Sbjct: 846 NRNIRDAAE-------------RGALNAPIQGSAADIMKIAMIH--------------AS 878 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 + + R ++ L V EI P Sbjct: 879 DALAKAKVRSRI---------------------ILQIHDE-----LVV--EI---APGEA 907 Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E ++ M A +PL ++ Sbjct: 908 EQVTGLVRDAMEHAVDLA--VPLDVSTGIGSDWQ 939 >gi|291450771|ref|ZP_06590161.1| DNA polymerase I [Streptomyces albus J1074] gi|291353720|gb|EFE80622.1| DNA polymerase I [Streptomyces albus J1074] Length = 908 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 90/640 (14%), Positives = 167/640 (26%), Gaps = 123/640 (19%) Query: 44 LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +D + + L D + HN+ V + T + A Sbjct: 377 WFDPARLDEADEKAFAQWLAAADRPKILHNAKGVMRVFAEH-GWRVEGVTM-DTALAAYL 434 Query: 103 NGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 AL A+ + E + FGE Sbjct: 435 VKPGRRSFALDALSLEYLGRELAPATADGQLTLGADDEAEAHALMVQARTVLDLGAAFGE 494 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 V T + E L ++ G D + + + Sbjct: 495 R-LEQVGATGLLA-------DVELPTSILLASLERAGIAADRDHLEAMERQFAAAVQQAV 546 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK----KLTPQAIQ 275 +E + ++L+ LF E L T+T + + + Sbjct: 547 KEAHDAVG-REFNLGSPKQLQEVLFGELNLPKTKKTKTGYTTDADALAWLAAQTDHELPV 605 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + ++ V + L++++ +DGR+ T A+ TGR S QN+P + Sbjct: 606 IMLRHREQAKLRVT-VEGLIKSIATDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRTDE 663 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAG 394 +R + EG + L+ AD + IE RV+A ++ Sbjct: 664 GRA-------------------------IRRGFVVGEGYESLMTADYSQIELRVMAHLSQ 698 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ ++AF +GEDL+ T ++ F V V + R K M L Y + Sbjct: 699 DEGLIEAFTSGEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAYG-----LSAFGLS 753 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 LN++ ++ E + ++ R + + +G + Sbjct: 754 QQLNIDAGEARALMDTYFERFGGVRDYLRHAVDEARATGYTETMLGRRRYLP-----DLN 808 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 S + + G A D+ + M + L S R L Sbjct: 809 SDNRQRRETAERMALNAPIQGTAA------DIVKIAMLRVHRALTEARLSSRML------ 856 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + IVL Sbjct: 857 ----------------------------------------LQVHDE---IVL-------- 865 Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 E + + M PL + + Sbjct: 866 EIAPGERERVEEIVRREMADAVQ--LRAPLDVSVGVGQNW 903 >gi|239978887|ref|ZP_04701411.1| DNA polymerase I [Streptomyces albus J1074] Length = 897 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 90/640 (14%), Positives = 167/640 (26%), Gaps = 123/640 (19%) Query: 44 LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +D + + L D + HN+ V + T + A Sbjct: 366 WFDPARLDEADEKAFAQWLAAADRPKILHNAKGVMRVFAEH-GWRVEGVTM-DTALAAYL 423 Query: 103 NGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 AL A+ + E + FGE Sbjct: 424 VKPGRRSFALDALSLEYLGRELAPATADGQLTLGADDEAEAHALMVQARTVLDLGAAFGE 483 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 V T + E L ++ G D + + + Sbjct: 484 R-LEQVGATGLLA-------DVELPTSILLASLERAGIAADRDHLEAMERQFAAAVQQAV 535 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK----KLTPQAIQ 275 +E + ++L+ LF E L T+T + + + Sbjct: 536 KEAHDAVG-REFNLGSPKQLQEVLFGELNLPKTKKTKTGYTTDADALAWLAAQTDHELPV 594 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + ++ V + L++++ +DGR+ T A+ TGR S QN+P + Sbjct: 595 IMLRHREQAKLRVT-VEGLIKSIATDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRTDE 652 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAG 394 +R + EG + L+ AD + IE RV+A ++ Sbjct: 653 GRA-------------------------IRRGFVVGEGYESLMTADYSQIELRVMAHLSQ 687 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ ++AF +GEDL+ T ++ F V V + R K M L Y + Sbjct: 688 DEGLIEAFTSGEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAYG-----LSAFGLS 742 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 LN++ ++ E + ++ R + + +G + Sbjct: 743 QQLNIDAGEARALMDTYFERFGGVRDYLRHAVDEARATGYTETMLGRRRYLP-----DLN 797 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 S + + G A D+ + M + L S R L Sbjct: 798 SDNRQRRETAERMALNAPIQGTAA------DIVKIAMLRVHRALTEARLSSRML------ 845 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + IVL Sbjct: 846 ----------------------------------------LQVHDE---IVL-------- 854 Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 E + + M PL + + Sbjct: 855 EIAPGERERVEEIVRREMADAVQ--LRAPLDVSVGVGQNW 892 >gi|255588755|ref|XP_002534708.1| DNA polymerase I, putative [Ricinus communis] gi|223524716|gb|EEF27672.1| DNA polymerase I, putative [Ricinus communis] Length = 267 Score = 194 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 59/367 (16%), Positives = 103/367 (28%), Gaps = 113/367 (30%) Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGR + QN+P + +R +A G Sbjct: 3 AITGRLASSDPNLQNIPVRTAEGRR-------------------------IREAFVAPPG 37 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 +V AD + IE R++A ++ + L AF ED++ T A F V A V +QR Sbjct: 38 SHIVSADYSQIELRIMAHLSQDAGMLSAFANNEDIHRATAAEIFGVERAAVDSEQRRYA- 96 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 G++ A Sbjct: 97 -------------KVINFGLIYGMS------------------------------AFGLA 113 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 +A + + ++ V + N+ + +Q Sbjct: 114 QNLNIERSAAANYIERYFARYPGVRQYMNDTRELAKQ----------------------- 150 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + GR L ++ + R +Q + D++ Sbjct: 151 ---QGYVETIFGRRLWVPEINSANV---QRRNGAERAAINAP------MQGTAADLIKLA 198 Query: 614 MMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 M+ K +++ VHDE+V E PD + L LM S + +PL AE Sbjct: 199 MIAVDQWLTAEKLQTKLIMQVHDELVLEVPDAELALIQEHLPRLMQSVAT--LDVPLLAE 256 Query: 667 GYESKRY 673 + Sbjct: 257 VGSGNNW 263 >gi|308803633|ref|XP_003079129.1| DNA polymerase I (ISS) [Ostreococcus tauri] gi|116057584|emb|CAL53787.1| DNA polymerase I (ISS) [Ostreococcus tauri] Length = 538 Score = 194 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 73/554 (13%), Positives = 157/554 (28%), Gaps = 139/554 (25%) Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT---------INDRGYCVDV 201 +W + D+ + ++R + + + + RG C D Sbjct: 86 DASWDSPTARLRADLALALRYYQRGSEIPRMQGISFARIVEAKIAVALGAMQHRGMCFDR 145 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTE 256 A+T + +L + G+ + +++ L+ + L + Sbjct: 146 HEANTQRAAANARVEELQNRARDVIGGVEINLSSAQQVGDVLYNQLKLPPPSAHAMKGAK 205 Query: 257 T----TCQRVLSSNKKLTPQAIQVFNNRMRAS-RSAVLKLNTLVEAMNSDGRLRGTLQFL 311 + T VL K P A V ++R R+ + +N++G R ++ Sbjct: 206 SSHLSTSVDVLQQMK--HPFAQIVLDHRGALKERAMCDGYDK-ATVVNAEGHARIHTRWN 262 Query: 312 -GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 ++ TGR S Q + R S R+C IA Sbjct: 263 NTSTATGRLSSSAPNVQQVGRGSM------------------------------RNCFIA 292 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 G+ LV AD + IE RVLA + ++ + F Sbjct: 293 PPGRVLVAADYSQIELRVLAHLTEDERLISLFNEHSRT---------------------- 330 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 V + G + + G + + ++ Sbjct: 331 ---VDVFCAIWNAGRNLPIETPTEPGT---------------RDIAKRTAYGIVYGQHAT 372 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 A + + A+ + RV + + + Q E+ Sbjct: 373 GLAEKLNCSKFEAQGYIAAFHRAFPRVQQWISRVIQTAER-------------------- 412 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + +++ SGR + +N + ++ + ++Q + D++ Sbjct: 413 -----DGAVIIPFSGRHRPLPKIHSNVFSERSEAQR---------QAVNTVIQGSASDLI 458 Query: 611 AEGMMN---------ATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKG 660 M+ A ++V +HDE++ E + ++ M Sbjct: 459 KTAMLRWCEATKAGEARAELVELVAQIHDELLFECEKDYVQEAVRVIRSCMEGA--LCLS 516 Query: 661 LPLKAEGYESKRYR 674 +P + K + Sbjct: 517 VPTPVKISTGKSWG 530 >gi|320531283|ref|ZP_08032259.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str. F0337] gi|320136486|gb|EFW28458.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str. F0337] Length = 912 Score = 194 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 97/676 (14%), Positives = 179/676 (26%), Gaps = 146/676 (21%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKEALENTDVTIVAHNSYFERTVLKAC 83 D ++ + D D ++P+ L L +TD + ++ L Sbjct: 351 DAALVSLS---DGSRAVAIDLT--EILPEDEAVLARFLSDTDRPKLVADAKGSWHALS-A 404 Query: 84 FNLDIPIHRWICTLVLARSNGL---PSALKAVGEA-LKLSSQKMEEGKELIARFCKGETH 139 L + + ++ + + L + ++E GE+ Sbjct: 405 RGLTLD-GVIADPSLAGYLCRPEQRSYDVETLTQRWLGIDLAAVDESGAQAN-DGPGESQ 462 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLD 189 + V + L+ E + Sbjct: 463 SAFDLEALTSDAVPATHMA--SARRAAVLLPLQVVLDEQMAARDAVGLFTDLEMPVAATL 520 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + D G VD A+ +D E G + ++L+ LF E + Sbjct: 521 TVMEDAGIAVDDAVLAARETELDARV-THAAEGAYAAAGRELNLSSPKQLQAVLFDELKM 579 Query: 250 HLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 T+T T L+ P + +R + L +A+ +DGR+ Sbjct: 580 PKTRKTKTGYTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQT--VEGLRKAIQADGRI 637 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 T Q A+ TGR S QN+P + Sbjct: 638 HTTFQQTIAA-TGRLSSTDPNLQNIPARHEEGMR-------------------------I 671 Query: 365 RSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 R EG L+ AD + IE R++A ++G+Q ++AF +GEDL+ A + Sbjct: 672 REAFTVGEGYDCLMTADYSQIEMRIMAHLSGDQALIEAFRSGEDLHRYVAALVHGIEVGD 731 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT QR+ K M L Y L ++ N+ + ++ Sbjct: 732 VTAQQRSHVKAMSYGLAYG-----LSTFGLARQLGIDNAEAADLRNAYFARFGKVHDYLE 786 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV----SELWNELHQAFEQTIENGKAII 539 + E + G R+ + + +A G A Sbjct: 787 SVVEQARRDGYTETMFGR---------RRYLPDLTSDNRQRREMAERAALNAPIQGSAAD 837 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 K+ + + + Sbjct: 838 IVKKAMIDVDGALTE--------------------------------------------- 852 Query: 600 NIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWA 658 Q +S IL + E++ E + +L M Sbjct: 853 ---QGLSSRIL----LQIHD-----------ELLIEVAPGEAAAVESLLKEQMGGAAE-- 892 Query: 659 KGLPLKAEGYESKRYR 674 +PL + +R Sbjct: 893 LSVPLDVAVGRGQTWR 908 >gi|311261782|ref|XP_003128859.1| PREDICTED: DNA polymerase nu-like [Sus scrofa] Length = 1413 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 73/487 (14%), Positives = 140/487 (28%), Gaps = 119/487 (24%) Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-------HLEDLT----ETTCQRV 262 +L+QE + +L+ LF + L L + +T V Sbjct: 959 RLKELEQEAHFVAG-EQFLITSNSQLREMLFGKLKLHLLHPRATLPRMGLQRPPSTSDTV 1017 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 LS+ + L P + R + ++ L A G + G + TGR S Sbjct: 1018 LSALQDLHPLPRIILEYRQ-VHKIKSTFVDGL-RAHMKKGSVSSVWNQTG-TVTGRLSAK 1074 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 Q + + + + + + ++ RS ++ EG+ + AD + Sbjct: 1075 RPNMQGISK----------LPIQIGAPRNAKGEAGDALTVSARSLFVSPEGRSFLAADFS 1124 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDL--YVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 IE R+LA ++G+ LK F+ E + ++ ++P VT+ R K + A+ Sbjct: 1125 QIELRILAHLSGDPELLKLFQEPERDDVFSALTSQWKGISPEHVTQADREQTKKVVYAVV 1184 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y A Sbjct: 1185 YG--------------------------------------------AGRERLAACLGVTL 1200 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R +++ QK+ ++ + + + G Sbjct: 1201 REAARFGESFLQKYKKIKDF---TQATIARCHQTGYVESV-------------------- 1237 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 GR + L Q R+ +VQ + D+ M+ A Sbjct: 1238 ---MGRRRPLPRIRARDQKLR---AQAERQA------VNFVVQGSAADLCKMAMIRIFAA 1285 Query: 621 -------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTS-----NPSWAKGLPLKAEG 667 +V +HDE++ E D+ + L M + +PLK Sbjct: 1286 VATSPTLTARLVAQIHDELLFEVEDSQIPEFAALVRGAMEALQEVPALGLQLQVPLKVSL 1345 Query: 668 YESKRYR 674 + + Sbjct: 1346 STGRSWG 1352 >gi|294786803|ref|ZP_06752057.1| DNA polymerase I [Parascardovia denticolens F0305] gi|315226433|ref|ZP_07868221.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105] gi|294485636|gb|EFG33270.1| DNA polymerase I [Parascardovia denticolens F0305] gi|315120565|gb|EFT83697.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105] Length = 1042 Score = 194 bits (492), Expect = 6e-47, Method: Composition-based stats. Identities = 88/664 (13%), Positives = 184/664 (27%), Gaps = 146/664 (21%) Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLK-----ACFNLDI---PIHRWICTLVLARSNG 104 + + L + L IV H+ L + T + A Sbjct: 479 LIEALDQLLRQESDHIVLHDFK---RWLHLTSNLRNQGQPLGGPDFLPVADTKLEAYLAQ 535 Query: 105 LPSALKAVGEA------LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR--- 155 + K G L L + +E F G + N E Sbjct: 536 PDATAKVDGLRHYAQKFLHLDVGETKEKTSEQGAFDLGLESDEETGENSAPSPEPADPRQ 595 Query: 156 ----LFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDV 201 C D R + P+ + E + + + G VD Sbjct: 596 EEREREETDCALDCAYLRALHDLFHPVLASRGQINLLKTIELPVSRVLSAMEMTGAGVDQ 655 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---- 257 + + + + + Q + + + ++L+ LF + GL T++ Sbjct: 656 SRLEQMRESFSAQAEQAQQIAWQEAGKEI-NLQSPKQLQAVLFDDMGLTPTKKTKSGGRT 714 Query: 258 TCQRVLSSN--KKLTPQAIQV----FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 T L + + + ++ + + TL++A++ T Sbjct: 715 TNAAALQELYMRSIHNERANAFLGALLRHREVNKLKQI-VQTLIDAIDVRDSRIHTTFEQ 773 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 + TGR S QN+P + E +R +AS Sbjct: 774 TVAATGRLSSTDPNLQNIPNRNVEGRE-------------------------IRGAFVAS 808 Query: 372 EGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 +G + L+ +D + +E R++A ++G++ ++AF +G D + + + + Q++ DQR+ Sbjct: 809 DGFESLLSSDYSQVELRLMAHLSGDEALIEAFRSGADFHKYVASLVYGIPIDQISSDQRS 868 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K M L Y L ++ + + ++ + Sbjct: 869 HIKAMSYGLAYG-----LSTYGLAQQLGISPAEADILRAKYFSTFGKVHDYLESLVAQAK 923 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + + G R+ + +L A E+ N Sbjct: 924 KRGYTETMFGR---------RRYFPDLRSSRRQLRDAAERAALN---------------- 958 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + + ++ Y+D+ + I+ Sbjct: 959 -APIQGSAADIMKIAMKKAYQDLKDAGVKSR---------------------------II 990 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670 + L V E+ P E +M+ M A +PL Sbjct: 991 ----LQIHDE-----LVV--EL---APGEQEQVTAMVKEAMEHAVKLA--VPLDVSTGVG 1034 Query: 671 KRYR 674 ++ Sbjct: 1035 SDWQ 1038 >gi|196005441|ref|XP_002112587.1| hypothetical protein TRIADDRAFT_25163 [Trichoplax adhaerens] gi|190584628|gb|EDV24697.1| hypothetical protein TRIADDRAFT_25163 [Trichoplax adhaerens] Length = 1492 Score = 193 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 76/658 (11%), Positives = 173/658 (26%), Gaps = 119/658 (18%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 V+ A + + + + +EN+ +A+N + +L ++I Sbjct: 932 VVGIAICWGGFDSYFVNLGDCNTLQDDVANNIENSSAIKIAYNLKEQYKILTRHLQVEIK 991 Query: 90 IHRWICTLVLARSNGLPSALKA--------VGEALKLSSQKMEEGKELIARFCKGETHEC 141 + + + K + + L + + + Sbjct: 992 GTSY-DPKIGIWLLDQDAHEKTFHAIISNYLADEAALLDCVIGTCTDGNGIGLHYNSQTS 1050 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 R +L V + + + S E + G + Sbjct: 1051 GRRRACIESVLVHKLHSV-----VEAMLKERELYKLYSEIEMPTIRTLCWLELDGIGFCM 1105 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261 + + +++ + + L+ E TC+ Sbjct: 1106 DECQQQIERLQYRLHYIEEMAYRIAG-RSFQLTSPTDIAHVLYTELN---------TCKD 1155 Query: 262 VLSSNKKLTPQAIQVFNNRMR-ASRSAVLK-LNTLVEAMN--SDGRLRGTLQFLGASRTG 317 VL ++ P V R ++ + L L + + R+ T Q A+ G Sbjct: 1156 VLQKLSQIHPLPALVLEWRRINSALTKTLYPLKRYSKYCHKSKTYRVYPTCQMHTAT--G 1213 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P+ D +R+ + + L+ Sbjct: 1214 RISISDPNLQNIPK-----------------------DFDIAKMVRMRNIIGCTNDTILL 1250 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + +E R++A ++ ++ + G D++ + + V+ +QR K M Sbjct: 1251 SADYSQLELRLIAHLSEDKQLSRVLNDGGDVFKAIASEWLCIPTDHVSDEQRQRAKQMCY 1310 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y MA + + ++ + F + Sbjct: 1311 GIIYGMTP-----MALGEQMKVPEEQAATFMHTFKSRYNGIAKFIEKTLVSCRREGYVST 1365 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + +R+ R + + L + + T G A K + + Sbjct: 1366 IMNR--KRLLPNIRSTN---ARLRSHAERQAINTTVQGSAADLVKIAMINI--------- 1411 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 + R R + K Sbjct: 1412 -----------------HKRIDEMCANRANRDNAEWKPKF-------------------- 1434 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 VL +HDE++ E + + S++ M + + L+ + K + Sbjct: 1435 -------VLQMHDELLFEIKANELESVSLIVKQEMENALK--LRVKLEVKIKTGKYWG 1483 >gi|310287301|ref|YP_003938559.1| DNA polymerase I [Bifidobacterium bifidum S17] gi|309251237|gb|ADO52985.1| DNA polymerase I [Bifidobacterium bifidum S17] Length = 943 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 77/613 (12%), Positives = 162/613 (26%), Gaps = 126/613 (20%) Query: 78 TVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV----GEALKLSSQKMEEGKELIARF 133 +L + LD+ W T + ++ L+L ++ + Sbjct: 437 HILAS-LGLDLA-EPWFDTKLAGYLVQPDYHADSLEQAASHFLQLQLDNADDVAQGQLDL 494 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193 K D + + +E + ++ + Sbjct: 495 SGDVDPADQRKDLLHMAMVRALADMLAAKIDEREQFRLLQSIE------LPVSHVLFGME 548 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G VD + V+ + V + + ++L+ LF + GL Sbjct: 549 QVGASVDFMRLTEMRDRFAVDARDAQETAWQFAGSRV-NLQSPKQLQAVLFDDMGLKPTK 607 Query: 254 LTET----TCQRVLSSNK-------KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 T++ T L + + +R + + +L++A+N D Sbjct: 608 KTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETNKLKQI--VQSLIDAVNPDD 665 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 T + TGR S QN+P + E Sbjct: 666 GRIHTTFEQTVAATGRLSSVDPNLQNIPNRNAEGRE------------------------ 701 Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +RS + EG + L+ +D + +E R++A ++G+ ++AF +G D + + + + Sbjct: 702 -IRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFRSGADFHKYVASLVYGIPV 760 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 +T DQR K M L Y L ++ + + + Sbjct: 761 DDITPDQRTHVKAMSYGLAYG-----LSTYGLAQQLKISPGEADRLKSQYFATFGKVHEY 815 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + + E + G R+ + + A E Sbjct: 816 LESLVADAREKGYTETMFGR---------RRYFPGLQSPNRNIRDAAE------------ 854 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 R + + + + + + + R Sbjct: 855 -RGALNAPIQGSAADIMKIAMIH--------------ASDALAKAKVRSRI--------- 890 Query: 602 VQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGL 661 ++ L V EI P E ++ M A + Sbjct: 891 ------------ILQIHDE-----LVV--EI---APGEAEQVTGLVRDAMEHAVDLA--V 926 Query: 662 PLKAEGYESKRYR 674 PL ++ Sbjct: 927 PLDVSTGIGSDWQ 939 >gi|157786436|ref|YP_001491613.1| Putative DNA polymerase I [Mycobacterium phage U2] gi|40769356|gb|AAR89682.1| gp42 [Mycobacterium phage U2] Length = 608 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 105/696 (15%), Positives = 192/696 (27%), Gaps = 171/696 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L +D ET + Y D + L FG + + V AL Sbjct: 36 RILGLDTETTD--------LGIYKPDFGIRLIQFG-NPWESWVLPVERGGVFVGAAVTAL 86 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKA 111 + V HN+ F+ V++ + + + T + + L+ Sbjct: 87 Q-KVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEE 145 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + + EE K +AR K D+ + Y D + + Sbjct: 146 LTKFY-IDPATAEEVKASMARLAKKHKTT--KDKIWALVDLDDPDYELYAGMDTILVSRL 202 Query: 172 FKRLEPL--------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 ++ PL E +L + + G+ +DV + L+ + + Sbjct: 203 LGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKAEHYTAVAR 262 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNN 279 V S EKL L TG+ ++ T T ++V L + + + Sbjct: 263 --YAYGVDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAIE 319 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + + +E ++D R+ + L A RT R S QNLP Sbjct: 320 AKKWGSWEKTWVRNFIERRDADDRVHPGINPLQA-RTARMSTTSPSAQNLPAND------ 372 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 VR C +A G+ +V D E RVLA +A + Sbjct: 373 ----------------------WMVRRCFLADPGQLMVSVDYQAQELRVLAALAND---- 406 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 + M Sbjct: 407 -------------------------------------------------RTMIRAFEEEA 417 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + NF + A ++V + + V++ Sbjct: 418 DLHQVTADAAGMDRKVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPGVTD 477 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 L L + N ++ P+GR L Sbjct: 478 LSKSLQREA--------------------------ANLGYVITPTGRRLPVDPDR----- 506 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV--LTVHDEIVCETP 637 G +VQ+ SRD+ A ++ +AG + L +HDE++ P Sbjct: 507 --------------GYAALNYMVQSTSRDVTASAVLRLHEAGMTPMIRLVIHDEVLASVP 552 Query: 638 DTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKR 672 + + A + +M +G+ + + R Sbjct: 553 EAEAEVTAKEIGRIMEQTF---RGVLINTDPEVGGR 585 >gi|327282241|ref|XP_003225852.1| PREDICTED: DNA polymerase theta-like [Anolis carolinensis] Length = 2435 Score = 193 bits (490), Expect = 1e-46, Method: Composition-based stats. Identities = 97/742 (13%), Positives = 198/742 (26%), Gaps = 150/742 (20%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD--PVM--------------------PQVLKEALE 62 ED+ V+ A + + + L+ L+ Sbjct: 1745 CEDILVVGLAVCWGGKDAFYISLQQKLKEQIEMSASLAPPSLDQNLTVAERLEHLQSCLQ 1804 Query: 63 NTDVTIVAHNSYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSA----LKAVGE 114 ++ + +E L + + + V S V Sbjct: 1805 DSKRDFSL--AMYEFIQHYKTLLKACGISLA-GSFEDPKVACWLLDPGSNERSLHNMVAS 1861 Query: 115 AL---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 L K+ G+ + R + L + + Sbjct: 1862 FLPEELFLLDKIGTGQGNQSIGLNASADHSGRYRAAVESVLVFHLMDKLSAL-----LQK 1916 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + E Y + G A T +++ + ++ + ++ L Sbjct: 1917 DNLQDIFHKMEMPNQYCLALLELNGIGFSTAECETQKHVMEAKLSETENQIYQLAGHS-F 1975 Query: 232 SSRCLEKLKTWLFLETGLHLE---------------------------DLTETTCQRVLS 264 S C + + LFLE L + +T + VL Sbjct: 1976 SLTCPDDIAEVLFLELKLPSDGESKMQRGKKTLGYTGRAVVNGNRVRLSKQFSTTKGVLE 2035 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGR 318 K L P + R + A+ K+ L+ + R+ Q A+ GR Sbjct: 2036 KLKALHPLPGLILEWRKITN--AITKVIFPLQREKLLNPILGMERIYPVSQTNTAT--GR 2091 Query: 319 WSGCVFPPQNLPR-------------------------PSRSHEELDQIITHLPTSITSD 353 S QN+P+ P + + + Sbjct: 2092 ISFREPNIQNVPKDFEIEMPILVEESPPTQRQHKMFNAPRNRNRKSSVLPCEPKNLTERL 2151 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 + +R + G ++ AD + +E R+LA + ++ L+A G D++ + Sbjct: 2152 TSKKIPFAVSMRHAFVPFPGGLILAADYSQLELRILAHLCCDRRLLQALNDGADVFRSIA 2211 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 A +AP V D R K + + Y GAK+ + + ++ +S Sbjct: 2212 AEWKMMAPEAVGNDLRQQAKQICYGMIYGIGAKSLGE-----QMGVDEKDASYYIDSFKS 2266 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + F R + + +G R R+ + + + T+ Sbjct: 2267 RYPGIQKFLRETVKKCNQDGFVQTIMGR--RRYLPTIRESNPYKKA---QAERQAVNTVV 2321 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 G A K V + + LPS + ++ + + R+ Y Sbjct: 2322 QGSAADIVKTATVNIQKQLE-------ALPSAVKSFEHLCSSTQNKWSGMAEK--RQIMY 2372 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMT 652 K G +L +HDE++ E + + + M Sbjct: 2373 P------------------------KHGGFFILQLHDELLYEVAEDSMIQVAQIVKHEME 2408 Query: 653 SNPSWAKGLPLKAEGYESKRYR 674 + L + + Sbjct: 2409 HAVK--LSVKLSVKVKVGSSWG 2428 >gi|329946786|ref|ZP_08294198.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str. F0386] gi|328526597|gb|EGF53610.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str. F0386] Length = 913 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 94/687 (13%), Positives = 177/687 (25%), Gaps = 156/687 (22%) Query: 21 ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKEALENTDVTIVAHNSYFER 77 + D ++ + D D ++P+ L E L + + + ++ Sbjct: 346 LKPVEGDAALVSLS---DGVRAVAIDLT--KILPEDEAALAELLADVERPKLVADAKGSW 400 Query: 78 TVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEA-LKLSSQKMEEGKELIARF 133 L L + + + + + L + + EG Sbjct: 401 HAL-RARGLTMD-GVVADPSLAGYLCRPEQRSYDVDTLTQRWLGIDLAVVGEG------- 451 Query: 134 CKGETHECLYDRNKPNHREAWR-----LFGEYCKGDVTVTREIFKRLEPLS--------- 179 + + +A V + L+ Sbjct: 452 -QNQADAGSSQSQSAFDLDALASDAVPAAHLASARRAAVLLPLQVVLDEQMADRDALGLF 510 Query: 180 -SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 E + + D G VD A+ +D E G + ++ Sbjct: 511 ADLEMPVAATLTVMEDVGIAVDDAVLAVRETELDARV-THAAEGAYAAAGRELNLSSPKQ 569 Query: 239 LKTWLFLETGLHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNT 293 L+ LF E + T+T T L+ P + +R + Sbjct: 570 LQAVLFDELKMPKTRKTKTGYTTDAEALAGLYAKTSHPFLENLLEHRDAIKLRQT--VEG 627 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L +A+ SDGR+ T Q A+ TGR S QN+P + Sbjct: 628 LRKAIQSDGRIHTTFQQTIAA-TGRLSSTDPNLQNIPARNEEGMR--------------- 671 Query: 354 PDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R EG + L+ AD + IE R++A ++G+Q ++AF +GEDL+ Sbjct: 672 ----------IRQAFTVGEGYECLMTADYSQIEMRIMAHLSGDQALIEAFRSGEDLHRYV 721 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 A + VT QR+ K M L Y L + N+ Sbjct: 722 AALVHGIDVDDVTAQQRSHVKAMSYGLAYG-----LSTFGLARQLGIGNAEAADLRNAYF 776 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV----SELWNELHQAF 528 + ++ + E G R+ + + +A Sbjct: 777 ARFGRVHDYLESVVEQARRDGYTQTMFGR---------RRYLPDLTSDNRQRREMAERAA 827 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 G A K+ + + + Sbjct: 828 LNAPIQGSAADIVKKAMIDVDRALSE---------------------------------- 853 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-ML 647 Q +S ++ ++ E + +L Sbjct: 854 --------------QGLSS----RVLLQIHDE-----------LLVEVASAEVEAVETLL 884 Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRYR 674 M +PL + +R Sbjct: 885 KEQMGGAAE--LSVPLDVAVGRGRTWR 909 >gi|304389498|ref|ZP_07371461.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656744|ref|ZP_07909631.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304327308|gb|EFL94543.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492699|gb|EFU82303.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 317 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 66/421 (15%), Positives = 117/421 (27%), Gaps = 119/421 (28%) Query: 264 SSNK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 P + +R R + + L E + DGR+ T A+ TGR S Sbjct: 2 EELARYNPHPFLEALLYHRDRIKLLQI--VRNLRERVADDGRIHTTFGQTVAA-TGRLSS 58 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVAD 380 QN+P + +R + + L+ AD Sbjct: 59 IDPNLQNIPARTVDG-------------------------QKIREAFVPQKPYAALMTAD 93 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R++A ++G++ L AF +GEDL+ + A + V P +VT QR+ K L Sbjct: 94 YSQIEMRIMAHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKATSYGLA 153 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y L Sbjct: 154 YG-----LSAYGLAAQL---------------------------------------NISQ 169 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +++ + ++ +V E N++ Sbjct: 170 RDAKQLMDTYFERFGKVREYLNQIVATA--------------------------TRVGYT 203 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-- 618 GR ++ + R +Q + D++ M+ Sbjct: 204 ETMRGRRRYLPELRSTN---RNVADNARRAALNAP------IQGSAADLMKAAMLQVDAD 254 Query: 619 ----KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 + ++L VHDE+V E + L MT +PL+ + Sbjct: 255 LRQEQLQSRVLLQVHDELVLEVAPGETERLETLVRQAMTGVAK--LRVPLEVSVGIGPNW 312 Query: 674 R 674 R Sbjct: 313 R 313 >gi|192824219|ref|YP_001994860.1| gp43 [Mycobacterium phage Pukovnik] gi|190610449|gb|ACE79969.1| gp43 [Mycobacterium phage Pukovnik] Length = 600 Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats. Identities = 113/682 (16%), Positives = 207/682 (30%), Gaps = 173/682 (25%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-VMPQVLKEALE 62 L +D ET G+ Y+ L FG D + P + Q +EAL Sbjct: 38 LAVDTETT--------GLDIYSSTFRCRLVQFGTQD-EAWVLPVDESPTQLQQETREAL- 87 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKAV 112 + IV N+ ++ VL CF + + + + T +LA+ +L+ + Sbjct: 88 DKLGKIVMQNASYDLQVLDHCFGIKMEDLWPKVLDTQILAKLVDPRPYGAGGFGHSLEEL 147 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 +S + ++ K L+A+ K + + Y D T I Sbjct: 148 IAEF-ISKDQAKDVKGLMAKLAKEHKTT--KAKIWSTIDLFHPEYLTYAGMDTIFTARIC 204 Query: 173 KR--------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 ++ L E ++ + I+ +G+ +DV A L+ E++ + L + Sbjct: 205 RKLTRLVPDVSRGLVPYEHKISEICSYIDRKGFQLDVEYAQELSDRWLYEKSVWEAILFT 264 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL-----TPQ---AIQV 276 + + E+ + E G ++ T+T ++V + TP+ + Sbjct: 265 EYG--LDNPNSNEQ-CADVIEEAGWKIKGRTDTGKRQVNADLYDEMIKKGTPEQAALAAM 321 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + + + +E +SD R + L A RT R S P Q LP Sbjct: 322 IQEAQKLGKWRNTWVQKFLEVKDSDDRCHTFVNPLQA-RTSRMSITGIPAQTLPAGD--- 377 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 VR C +A G + D E RVLA ++G+ Sbjct: 378 -------------------------WTVRRCFLAEPGHVMSSIDYQTQELRVLAALSGD- 411 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + M Sbjct: 412 ----------------------------------------------------KTMIEAFK 419 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + P + NF A + +RV +A+ + + Sbjct: 420 TGADLHQMTADAAQVPRKIGKMANFLTVYGGGAKTLAEQANIDFPTAKRVLEAFAKTYPG 479 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V+ +L + G ++ GR L V ++ Sbjct: 480 VARYSKKL---AAEAGRQGY-----------------------IVNGMGRRLP---VDSS 510 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVC 634 R+Y ++Q+ SRD+ ++ +AG+ + L +HDEIV Sbjct: 511 RTY----------------SALNYMIQSSSRDVTCRALIRLHEAGFTPYLRLPIHDEIVA 554 Query: 635 ETP-DTDEFNASMLYHLMTSNP 655 P + E+ A + LM Sbjct: 555 SLPAEKAEWGAKKIGQLMAEEM 576 >gi|56808533|ref|ZP_00366268.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Streptococcus pyogenes M49 591] Length = 418 Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats. Identities = 72/494 (14%), Positives = 141/494 (28%), Gaps = 111/494 (22%) Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE- 246 + + G V+ A + + V L QE+ + + ++L + LF + Sbjct: 24 VLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKM 82 Query: 247 -TGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 L + T+ +T VL + P ++ + R ++ + L + + +DG Sbjct: 83 QLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADG 141 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 ++ ++TGR S QN+P Sbjct: 142 KIHTRYVQD-LTQTGRLSSVDPNLQNIPIRLEQGR------------------------- 175 Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R S E L+ +D + IE RVLA ++G++ + AF G D++ +T R F + Sbjct: 176 LIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDK 235 Query: 422 A-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 A VT + R K + + Y + L + ++ E + + Sbjct: 236 AADVTANDRRNAKAVNFGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKA 290 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + + + + E R + V + + G A Sbjct: 291 YMENVVREAKDKGYVETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADI 345 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 K + L + L Sbjct: 346 LKISMINLDKALQAGGFRAKCL-------------------------------------- 367 Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAK 659 + IVL V P+ + L M + A Sbjct: 368 --------------LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA- 401 Query: 660 GLPLKAEGYESKRY 673 +PL + + + Sbjct: 402 -VPLCVDESTGQSW 414 >gi|212716113|ref|ZP_03324241.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM 16992] gi|212661480|gb|EEB22055.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM 16992] Length = 950 Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats. Identities = 90/610 (14%), Positives = 176/610 (28%), Gaps = 130/610 (21%) Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAV--GEALKLSSQKMEEGKELIA---RFCKGETH 139 + +P T + + A L E+ + F + E Sbjct: 447 GVKLP-EPLFDTKLAGYLVHPDFHADTLEQAAAHFLDLHVEEQSESATQGTLDFDEPEES 505 Query: 140 ECLYDRNKPNHREAWRLFGE--YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197 D P H L D + L S E + + + G Sbjct: 506 VQQKDDQLPRHTAIVGLLARNLSNSLDQREQFAL------LESVEIPVSRVLYGMEHAGA 559 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257 VD+ + + + + QE G + + ++L+ LF + GL T+T Sbjct: 560 QVDMNRLMNMREQLASD-ANHAQETAWQYAGKRVNLQSPKQLQKILFEDMGLKPTKKTKT 618 Query: 258 ----TCQRVLSSNKKLTPQ-------AIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLR 305 T L + + + + +R + + + TL++A N SDGR+ Sbjct: 619 GSYTTNAAALQTLRDRSYDNDSACQFLDALLLHREKNKLKQI--VQTLIDATNGSDGRIH 676 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 T + A+ TGR S QN+P + E +R Sbjct: 677 TTFEQTVAA-TGRLSSVDPNLQNIPNRDPAGRE-------------------------IR 710 Query: 366 SCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 S + EG + L+ +D + +E R++A ++G++ ++AF +G D + + + V ++ Sbjct: 711 SAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEI 770 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T DQR+ K M L Y + L + + + Sbjct: 771 TSDQRSHVKAMSYGLAYG-----LSTYGLSQQLGIKPGEAESLKQQYFATFGKVHEYLES 825 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + E + G R+ + + A E+ N Sbjct: 826 LVSTAREKGYTETIYGR---------RRYFPGLKSPNRAVRDAAERAALN---------- 866 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 + + ++ + + Sbjct: 867 -------APIQGSAADIMKIAMIRADDALHES---------------------------G 892 Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLK 664 ++ I+ + L V EI P E +++ M A +PL Sbjct: 893 LASRII----LQIHDE-----LVV--EI---APGEAEQATALVKDAMEHAVDMA--VPLD 936 Query: 665 AEGYESKRYR 674 ++ Sbjct: 937 VSTGIGSDWQ 946 >gi|291296659|ref|YP_003508057.1| DNA polymerase I [Meiothermus ruber DSM 1279] gi|290471618|gb|ADD29037.1| DNA polymerase I [Meiothermus ruber DSM 1279] Length = 1273 Score = 191 bits (485), Expect = 3e-46, Method: Composition-based stats. Identities = 73/415 (17%), Positives = 140/415 (33%), Gaps = 72/415 (17%) Query: 31 ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 + A + V Q LK+ E + + + +VL + +P Sbjct: 332 LGLA-AYAGGKVY-----RGQPSLQELKKFPEIRSMV-----AK-DLSVLALKEGVWVPP 379 Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 ++LA ++ + + R+ G+ +R + H Sbjct: 380 G--DDPMLLAYLYDPSNS----------------DPASTVRRYGAGDWGSDPGERAQAAH 421 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 W + + +++++E S + I RG ++ L++ Sbjct: 422 -TLWETLQSRIGENPKIEW-LYQQIEKPLSA------VLARIEARGISLNAEYLLQLSEE 473 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSS 265 + E + L+ E+ L + ++L+ L+ E L +T L Sbjct: 474 LAKEISYLEAEIHRLAG-RSFNVNSRDQLEVVLYDELKLSAPGRKTQTGKRSTAASALEE 532 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVF 324 P ++ R ++ L+ L + ++ GRL G + TGR S Sbjct: 533 LLGQHPIIERILTYR-ELTKLKSTYLDPLPKLIHPKTGRLHTRFNQTG-TATGRLSSVDP 590 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P + +R A+ G +LVVAD + I Sbjct: 591 NLQNIPVRTEIGRR-------------------------IRKAFRAAPGMRLVVADYSQI 625 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 E RVLA ++G++ + F G D++ T A F + P +V +QR K + Sbjct: 626 ELRVLAHLSGDENLINVFREGRDIHTQTAAWMFGLEPDKVGAEQRRAAKCLVEGT 680 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 61/227 (26%), Gaps = 45/227 (19%) Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A L++ + NF + + E E + + Sbjct: 1083 ARVYDLSVEGKPAYLAEGFVSHN---TINFGVLYGMSAHRLSNELSISYAEAEGFIERYF 1139 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + +V E + QT + GR Sbjct: 1140 ASYPKVREWIERVLADARQT--------------------------GYVETMFGRRRFVA 1173 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLT 627 D+G+ + + R VQ + D++ M+ +VL Sbjct: 1174 DLGSR---VRSVREAAERMAFNMP------VQGTAADLMKLAMVKLQPELEPLEAHLVLQ 1224 Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE++ E P + + +M WA +PL+ + + Sbjct: 1225 VHDELLVEAPADKAEAVAGVVREVMQQA--WALAVPLEVGTGIGENW 1269 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 4/71 (5%), Positives = 15/71 (21%), Gaps = 5/71 (7%) Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 + + Y A L+++ + + + + + Sbjct: 1105 NTINFGVLYGMSAHRLSNE-----LSISYAEAEGFIERYFASYPKVREWIERVLADARQT 1159 Query: 493 AIEDLFIGTAC 503 + G Sbjct: 1160 GYVETMFGRRR 1170 >gi|148272937|ref|YP_001222498.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830867|emb|CAN01811.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 894 Score = 191 bits (485), Expect = 3e-46, Method: Composition-based stats. Identities = 92/666 (13%), Positives = 182/666 (27%), Gaps = 134/666 (20%) Query: 19 CGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT 78 G+ +D + F + L + + ++ + Sbjct: 347 LGLTVETQDGRPVGFGLA-SATEAVTLPWQEGRADYAPFERWLASDA-PKIMSDAKLQVK 404 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCK 135 ++ L++ LV L A+ + + +L+ Sbjct: 405 AMRRA-GLEVQGLA-FDVLVAGWLLRPGFTDKTLAALVSRYLMEDLPEPDANQLVPETEA 462 Query: 136 GETHECLYDRNKPNHREAWRLFG-EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 EAW E+ +V R + + E + + Sbjct: 463 LTAPV-----------EAWYTLRVEHALREVLDERTLGV----MVDIEMPTLLVLVEMEL 507 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 RG D A L+ + T L Q + + + ++L+ LF + G+ Sbjct: 508 RGVATDRAGLAELSAQLQERITDLAQRAFAEIGKEI-NLGSPKQLQEVLFDQLGMPKTRA 566 Query: 255 TE---TTCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 + +T L+ P + +R + + + TL + D R+ T Sbjct: 567 NKTGFSTDAGALADLQASNPHPFLDLLLEHRDASKLRQI--IQTLERGIGDDERIHTT-Y 623 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 + TGR S QN+P + +RS + Sbjct: 624 VQTGTTTGRISSNDPNLQNIPVRTEEGRR-------------------------IRSAIR 658 Query: 370 ASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 EG L+ AD + IE R++A ++G+ ++AF GEDL+ +R F V PA V+ + Sbjct: 659 VGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFAAGEDLHRFVGSRIFGVEPADVSAEM 718 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K M L Y + L + + + ++ R + E Sbjct: 719 RTKVKAMSYGLAYG-----LSAFGLSKQLRIPSSEAKQLMTDYFARFGAVRDYLRQVVEE 773 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + G + +S L + +A G A K + + Sbjct: 774 ARAAGYTETIFGRRRP-----FPDLNSPNRVLRDNAERAALNAPIQGSAADIMKIAMIRI 828 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 ++ RD Sbjct: 829 EADMRE----------------------------------------------------RD 836 Query: 609 ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667 + + ++ DE++ E + + M +PL+ + Sbjct: 837 MASRMLLQVH-----------DELILEVAAGEWDALEAIVTDRMAHAAD--LRVPLEVQV 883 Query: 668 YESKRY 673 + Sbjct: 884 GRGDSW 889 >gi|300122531|emb|CBK23101.2| unnamed protein product [Blastocystis hominis] Length = 437 Score = 191 bits (484), Expect = 4e-46, Method: Composition-based stats. Identities = 78/481 (16%), Positives = 146/481 (30%), Gaps = 117/481 (24%) Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 L ++ G VD A ++D L+Q+ E+L + +++ L+ E Sbjct: 19 PLLAHMDATGVNVDSAALQRNKMVIDPLLKDLEQKAEALVGHPILMWSS-KQVCEVLYDE 77 Query: 247 TGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE------AMNS 300 L + + VL + P V R S+ ++ L + ++ Sbjct: 78 LKLEAPKGNRVSTESVLQTMADKHPFPGLVIEYRR-LSKQMSTYIDGLEKEFVSVPFRST 136 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 + +L + A+ TGR S Q LP+ S L + Sbjct: 137 ETKLIYSTWNQMATGTGRLSTAAPNMQTLPKRSLE--------------------RLSNL 176 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE--TGEDLYVTTYARSFN 418 +R +A ++L+ D IE RV A + + + F D+Y + Sbjct: 177 DVDIRGAFVALPNRRLISVDYRQIEMRVFAHCSHDIALINLFSSGQNSDIYTMIASMIHK 236 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 V VT+ R KV+ L L Y G+ + + A +K Sbjct: 237 VEVKDVTQKFRDEAKVITLGLCY--------------GMGVESMASKLKI---------- 272 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 ++K + + V + + +T Sbjct: 273 --------------------PILTATQLKNSILNRFKGVLQFMKNTISSARKTH------ 306 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 + SGR + + Sbjct: 307 --------------------FVETLSGRRRYF----------KAKDSGGEGLAHIDRQAV 336 Query: 599 ENIVQAVSRDILAEGMMNATK----AGYDIVLTVHDEIVCETPDTD---EFNASMLYHLM 651 +++Q + D+L M+ K +I+L +HDE+V + PD+D E ++L +M Sbjct: 337 NSVIQGSAADLLKCAMILLWKPLSELDSEIILQIHDELVIDCPDSDEVCEKVIALLNQVM 396 Query: 652 T 652 Sbjct: 397 C 397 >gi|94269757|ref|ZP_01291549.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] gi|93451091|gb|EAT02034.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] Length = 352 Score = 190 bits (483), Expect = 5e-46, Method: Composition-based stats. Identities = 66/434 (15%), Positives = 118/434 (27%), Gaps = 109/434 (25%) Query: 239 LKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 + L+ L T+ +T R L V ++R S+ ++ Sbjct: 8 MGEVLYERLKLPHARKTKGKTGYSTDYRELERLAAYHDLPAAVISHRN-LSKLKSTYVDK 66 Query: 294 LVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L ++ DGR+ T + TGR S QN+P + L Sbjct: 67 LATLIDPADGRVHTTFNQ-TVTATGRLSSSNPNLQNIPIRTPEGRRL------------- 112 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 R+ +A+ + AD + I+ RVLA +G+ +AF +D++ T Sbjct: 113 ------------RAAFVAAAEHLFLAADYSQIDLRVLAHYSGDPVLQEAFAHDQDIHART 160 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 A F V V+ D R + K + + Y A L + + Sbjct: 161 AAEIFRVNQGLVSADMRRVAKTINFGIVYGMSA-----FGLAEQLRCSRKEAQTFIDRYF 215 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 E ++ F + + E Sbjct: 216 ELYQGVHRFMQEIVEQARRDGWVGTL---------------------------------- 241 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 ++RR +P + R N T + Sbjct: 242 -------LQRRRPLPEINSGNKM----------RREFAERTAINTPIQGTAADIIKLAAI 284 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLM 651 + D +E ++ HDE++ E P + ++ M Sbjct: 285 ACDRALRE------ADCRSEALLQI-----------HDELIFEVPQDELAQVGPLIRQAM 327 Query: 652 TSNPSWAKGLPLKA 665 A +PL Sbjct: 328 EEVMELA--VPLTV 339 >gi|328724320|ref|XP_003248104.1| PREDICTED: DNA polymerase theta-like isoform 2 [Acyrthosiphon pisum] Length = 1583 Score = 190 bits (483), Expect = 6e-46, Method: Composition-based stats. Identities = 86/651 (13%), Positives = 185/651 (28%), Gaps = 166/651 (25%) Query: 30 VILFAFGFDDHPV-ELWDCVH-DPVMPQVLKEALENTDVTIVAHN---SYFERTVLKACF 84 + FA + V D P +LK+ L N ++ + N + ++ C Sbjct: 1072 LKGFAITWYKQSVVHYVDFNKTGPSGVSLLKKLLSNKNLIV---NITDAKLNYKIISQCC 1128 Query: 85 NLDIPIHRWICTLVLARSNG--LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 N+ P+ ++ V ++L + + K++ + F Sbjct: 1129 NIK-PVCKFRDPFVADWLINGQPKNSLNNLVQWNLNFQGKIQTNDAVFNAFIT------- 1180 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 + R + Y + E + + + G+ ++ Sbjct: 1181 -LKLMSTLRHQLKQIYIY---------------KTFKDIEMPIQIILAKMELYGFGLNKK 1224 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262 LN V+ + ++ + + LE ++ + T Sbjct: 1225 HLVELNDTVNKLMANISEQGFEQSGIRFNMQSTLE----------WAKVKKKLKLTDSS- 1273 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 + +++ N + S +N + N R S TGR S Sbjct: 1274 -------SHLLVELVKNWRKLSCLRNTHINMYLTIQND----RVHCDSNTYSNTGRISMH 1322 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 QN+P+ E+ +RS + + LV D Sbjct: 1323 EPNLQNIPKDYVIENEIL----------------------SLRSAFVPKSDQTLVSVDFC 1360 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RVLA ++ + L A + D+++ ++ N+ +V + R K + + Y Sbjct: 1361 QIELRVLAHLSKDSILLSALTSPGDVFINLSSKWHNIPEIEVCDELRQKTKQVCYGMLYG 1420 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 G + Sbjct: 1421 MGTVTLSE--------------------------------------------TLNITQDE 1436 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 ++ +++ V++ +NE ++ Sbjct: 1437 AHKLISEFKRTFPGVNKYFNECVLQCRS--------------------------MGLVKT 1470 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 SGR + D+ + + + Q+ R+ I+Q + D+ M+ K Sbjct: 1471 LSGRIRHFPDINSEVPKIKS---QVERQAI------NTIIQGSAADVTKMAMIKVDKIIN 1521 Query: 621 ------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLK 664 +V+ +HDE++ + +T A S + M + + LP+K Sbjct: 1522 QGVLNTRVHLVMHLHDELIFDVENTVLDEACSTIIKTMEAAVNLCVPLPVK 1572 >gi|328724318|ref|XP_003248103.1| PREDICTED: DNA polymerase theta-like isoform 1 [Acyrthosiphon pisum] Length = 1691 Score = 190 bits (483), Expect = 6e-46, Method: Composition-based stats. Identities = 86/651 (13%), Positives = 185/651 (28%), Gaps = 166/651 (25%) Query: 30 VILFAFGFDDHPV-ELWDCVH-DPVMPQVLKEALENTDVTIVAHN---SYFERTVLKACF 84 + FA + V D P +LK+ L N ++ + N + ++ C Sbjct: 1180 LKGFAITWYKQSVVHYVDFNKTGPSGVSLLKKLLSNKNLIV---NITDAKLNYKIISQCC 1236 Query: 85 NLDIPIHRWICTLVLARSNG--LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 N+ P+ ++ V ++L + + K++ + F Sbjct: 1237 NIK-PVCKFRDPFVADWLINGQPKNSLNNLVQWNLNFQGKIQTNDAVFNAFIT------- 1288 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 + R + Y + E + + + G+ ++ Sbjct: 1289 -LKLMSTLRHQLKQIYIY---------------KTFKDIEMPIQIILAKMELYGFGLNKK 1332 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262 LN V+ + ++ + + LE ++ + T Sbjct: 1333 HLVELNDTVNKLMANISEQGFEQSGIRFNMQSTLE----------WAKVKKKLKLTDSS- 1381 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 + +++ N + S +N + N R S TGR S Sbjct: 1382 -------SHLLVELVKNWRKLSCLRNTHINMYLTIQND----RVHCDSNTYSNTGRISMH 1430 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 QN+P+ E+ +RS + + LV D Sbjct: 1431 EPNLQNIPKDYVIENEIL----------------------SLRSAFVPKSDQTLVSVDFC 1468 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RVLA ++ + L A + D+++ ++ N+ +V + R K + + Y Sbjct: 1469 QIELRVLAHLSKDSILLSALTSPGDVFINLSSKWHNIPEIEVCDELRQKTKQVCYGMLYG 1528 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 G + Sbjct: 1529 MGTVTLSE--------------------------------------------TLNITQDE 1544 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 ++ +++ V++ +NE ++ Sbjct: 1545 AHKLISEFKRTFPGVNKYFNECVLQCRS--------------------------MGLVKT 1578 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 SGR + D+ + + + Q+ R+ I+Q + D+ M+ K Sbjct: 1579 LSGRIRHFPDINSEVPKIKS---QVERQAI------NTIIQGSAADVTKMAMIKVDKIIN 1629 Query: 621 ------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLK 664 +V+ +HDE++ + +T A S + M + + LP+K Sbjct: 1630 QGVLNTRVHLVMHLHDELIFDVENTVLDEACSTIIKTMEAAVNLCVPLPVK 1680 >gi|194432044|ref|ZP_03064333.1| Bbp42 [Shigella dysenteriae 1012] gi|194419573|gb|EDX35653.1| Bbp42 [Shigella dysenteriae 1012] gi|332089212|gb|EGI94319.1| DNA polymerase [Shigella dysenteriae 155-74] Length = 449 Score = 190 bits (483), Expect = 6e-46, Method: Composition-based stats. Identities = 97/266 (36%), Positives = 146/266 (54%), Gaps = 6/266 (2%) Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQK--MEEGKELIARFCKGETHECLYDR- 145 P+ RW T+V A ++GLP +L + E L + K +EGK LI FCK R Sbjct: 7 PVERWRDTMVQALAHGLPGSLGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRA 66 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVAL 203 H E WR F Y D+ RE++ RL + + EL W+ DQ INDRG C+D+ L Sbjct: 67 TSKTHPEEWRRFVAYAGLDIEAMREVYNRLPKWNYQGTELALWHRDQQINDRGVCMDMQL 126 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263 A + VD E+ +L + + +T G V ++ + L + G+ L D+ +T +R + Sbjct: 127 ARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLERRI 186 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 ++ L ++ R++AS ++ K L++ ++ DGRLRGTLQF GASRTGRW+G + Sbjct: 187 AN-PDLPSAVKELLAIRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRL 245 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTS 349 F PQNLPRPS E++D+ I + Sbjct: 246 FQPQNLPRPSLKQEQIDEGIEAPNAA 271 >gi|224003183|ref|XP_002291263.1| DNA polymerase [Thalassiosira pseudonana CCMP1335] gi|220973039|gb|EED91370.1| DNA polymerase [Thalassiosira pseudonana CCMP1335] Length = 500 Score = 190 bits (482), Expect = 8e-46, Method: Composition-based stats. Identities = 63/483 (13%), Positives = 132/483 (27%), Gaps = 140/483 (28%) Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 + + + RG + L+ + ++T +++ +L Sbjct: 78 PVQSILAAMECRGVAFYPNHLKRNEAQANERIEALEAQARTITNDSSFLLSSPQQISNYL 137 Query: 244 FLETGLHLED----LTET---TCQRVLSSNK-----KLTPQAIQVFNNRMRASRSAVLKL 291 + + + T++ T + L + K P + R ++ + Sbjct: 138 YDILKMKVPSGLVQKTKSQRSTSEETLQALKAASNGSPHPIIDVILEFR-TLNKLLTTYI 196 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L R+ A RTGR S Q +P+ Sbjct: 197 KPLPTFCLP-QRIHPQWSEC-AVRTGRLSCRQPNLQQVPKDD------------------ 236 Query: 352 SDPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFET--GED 407 VR + S+ + L D + E R+LA M+G++ + F+ D Sbjct: 237 ---------GASVRRSFVPSKKETMCLFACDYSQKEVRILAHMSGDKALISLFQMDANVD 287 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +Y + N +T +RA K + LAL Y Sbjct: 288 IYKQMSSLIRNKPVESITAQERAQFKQVTLALLYGMSPN--------------------- 326 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + A + + ++ + ++ V + + Sbjct: 327 -----------------------QVAKKLNITKSQAIQMMNDFFRRFQGVKNWMEDTKEF 363 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + N ++ +GR + ++ N Q Sbjct: 364 ARR--------------------------NHYVVTIAGRRRYLDGIDSDD---NGAKAQA 394 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA---------------GYDIVLTVHDEI 632 R+ ++Q + D++ M+N + I+L +HDE+ Sbjct: 395 ERQAI------NTVIQGSAADLMKCSMINIAENLQRWQEDNSSNGTSSRPRILLQIHDEL 448 Query: 633 VCE 635 V E Sbjct: 449 VLE 451 >gi|315452575|ref|YP_004072845.1| DNA polymerase I [Helicobacter felis ATCC 49179] gi|315131627|emb|CBY82255.1| DNA polymerase I [Helicobacter felis ATCC 49179] Length = 861 Score = 190 bits (482), Expect = 8e-46, Method: Composition-based stats. Identities = 76/619 (12%), Positives = 163/619 (26%), Gaps = 159/619 (25%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGE 137 K + LD+P H + +LA + + A+G L S + L A + Sbjct: 373 FKQRYQLDLPTH-YEDVALLAWLHNSSLEPQMSALGRLFSLESFSSKPHAPLNAAQMESN 431 Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197 T + L ++ + E L + + +G+ Sbjct: 432 TRLIARAYTHYKDTLSPDL------------LQLAR------ELEYPLLAILLEMQAQGF 473 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLE 252 +D+A TL Q L ++ +L + ++ +L+ + GL Sbjct: 474 SLDLAYFQTLKQEFAQSLNTLQNQIHAL-AHTDINVNSTKQWAHFLYQDLGLQAKGVKKI 532 Query: 253 DLTETTCQRVLSSNKKLTP-------QAIQVFNN---RMRASRSAVLKLNTLVEAMNSDG 302 +T + L + ++ + + + + + L+ N G Sbjct: 533 KTGFSTDEASLKALQETYQGARVQGVEVATLLDALLGYRELFKLQSTYVEPLLTQ-NQHG 591 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 ++ + + R S QN+P + +++ Sbjct: 592 KIHTIFYQHT-TASSRLSSAHPNLQNIPIRTPLGKKIA---------------------- 628 Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 I S L+ AD + IE R+LA + + ++AF +D+++ T FN Sbjct: 629 ---HGFIPSAPDLLLLGADYSQIELRLLAHFSNDTHLIQAFLQNQDIHLNTALALFNDPH 685 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 + A A G+ Sbjct: 686 KRH--------------------AAKSINFALIYGMGP---------------------- 703 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 A + + + + ++L E + Sbjct: 704 --------RRLADTLKISQQEAKDYIDRYFNAFPTIKDFLDQLK--ARILQEGKITTLLG 753 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 +R + Y + + Sbjct: 754 HQRHFDFTNATPKL----------------------------------QAEYLREGINTL 779 Query: 602 VQAVSRDILAEGMMNATKAGY-----DIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNP 655 Q + D++ M+ +++ VHDEI+ E P T + + +M Sbjct: 780 FQGSASDLVKLAMLKIHAHIAKYPRVKMLVQVHDEIILEVPKTQVSQIALEIKTIMEGI- 838 Query: 656 SWAKGLPLKAEGYESKRYR 674 + +PL+ + Sbjct: 839 -YPLKVPLECHTSYGANWG 856 >gi|170592393|ref|XP_001900953.1| DNA polymerase I family protein [Brugia malayi] gi|158591648|gb|EDP30253.1| DNA polymerase I family protein [Brugia malayi] Length = 475 Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats. Identities = 74/507 (14%), Positives = 151/507 (29%), Gaps = 117/507 (23%) Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E + L I G D A TLN + + T+++ + ++ + Sbjct: 69 KSVELELKSVVLFSEIEITGIAFDRNKALTLNSKLQQKLTEIEAKAYGISGIP-FNFGSA 127 Query: 237 EKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++ LF+ + + + +T + VL P + R + + L Sbjct: 128 AEISQILFVRLQIPPPNASTGRHYSTNKIVLQQLAPKYPIISLILEWRR-INTALTTSLP 186 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L++ SDGR+R + GR QN+ + + Sbjct: 187 ILLKLCCSDGRIRANFITHCCT--GRVLTVHPNVQNVQKDAIID---------------- 228 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +RS I +G+ L+ +D +E R+LA ++ + + F T +D + Sbjct: 229 --------GFSIRSLFIVPKGRILLSSDYRQLEMRMLAHLSADPNLISLFLTKDDFFEII 280 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 + +N K R K + + Y G Sbjct: 281 TNK-WNKNETLHIKVDRNKVKQLCYGIIYGMG---------------------------- 311 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 + E +++ ++ Q +V +++ Sbjct: 312 ----------------AISLSKELGISKQHAQQMIISFFQLFPKVRTWMDKILAMCRT-- 353 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 N + GR + + + L T Q R+ Sbjct: 354 ------------------------NGFVSTLLGRRRFLPQITS--AVLQTELAQAERQAI 387 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFN-ASML 647 +Q ++ ++N K IV+ +HDE++ ET ++ + ++ Sbjct: 388 ------NTCIQGSVAELFKMALLNLRKNLLGTNSSIVMQLHDEVLIETDESSIASIVEII 441 Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRYR 674 H MTS +PL + K + Sbjct: 442 KHSMTSVTP-NLRVPLAVKISFGKSWG 467 >gi|144453|gb|AAA23103.1| putative DNA polymerase [Citrus greening disease-associated bacterium] Length = 206 Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats. Identities = 107/206 (51%), Positives = 129/206 (62%), Gaps = 2/206 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +D PV+LWD +P L + Sbjct: 1 MSKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL+ Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 K EEGK LIARFCKG YD + NH +AW LF EYCK DV TRE+FK L PL Sbjct: 121 HLTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALA 204 + +E+ LW LDQ INDRGY +D+ L Sbjct: 181 NPEERTLWLLDQEINDRGYRIDLDLV 206 >gi|284009391|emb|CBA76577.1| phage DNA polymerase [Arsenophonus nasoniae] Length = 223 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 79/215 (36%), Positives = 113/215 (52%), Gaps = 7/215 (3%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 LF D ET S I + CG +YAE+ ++LFA+ ++ PV++WD D MP+ LK L++ Sbjct: 10 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHEPVKVWDVTQDKTMPKDLKAYLDD 68 Query: 64 TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL--SS 120 ++ V HN F+ +LK N+D+P+ R TLV A ++GLP AL ++ + + Sbjct: 69 PEILTVWHNGGMFDTVILKHALNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 128 Query: 121 QKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K +EGK LI FCK R H E W F Y D+ REI++ L + Sbjct: 129 TKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHLPRWN 188 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVD 212 E W LDQ IN RG C+DV LA + V+ Sbjct: 189 MNFNETTLWQLDQRINLRGMCMDVELAKSALTAVE 223 >gi|307106974|gb|EFN55218.1| hypothetical protein CHLNCDRAFT_52598 [Chlorella variabilis] Length = 2117 Score = 188 bits (476), Expect = 4e-45, Method: Composition-based stats. Identities = 95/725 (13%), Positives = 176/725 (24%), Gaps = 180/725 (24%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN--- 85 + A + + L+ + V + + L Sbjct: 1485 RLEGVAVSWRSGQAFYVPLHRRDDLLAELRPLFWSAAVEKATWDLRGQLAALAKVLGPGA 1544 Query: 86 LDIPIHRWICTLVLARSNGLPSALKA------VGEALKLSSQ---KMEEGKELIARFCKG 136 L +P + + G P AL+ V L K E + + + Sbjct: 1545 LGVPGDQ---------AAGCPLALRDPLVDVRVAAWLGTPDDGRLKDESSHSVGSGRKEP 1595 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 T + W + + + +++ +++W L RG Sbjct: 1596 YTLSDMLKIRGGQAV--WAEATQGMQASTAASGARRADAGRRAAQARKMWQLL-RSRLRG 1652 Query: 197 YCVDVALAHT---LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE- 252 + L T L ++ +L+ + S +++ LF L Sbjct: 1653 DELLPPLWRTEMPLEPMLQRRIEELEGMAHAEAGQ-EFSLSSPQEVSRILFEVLKLAPPP 1711 Query: 253 ------DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM-------- 298 +T Q VL P A +F +R + L+ + Sbjct: 1712 CAKDLKSGGYSTGQEVLLEL-HEHPIARLIFEHRKLRTLLNRQGGPGLLPFVQGFKMHLA 1770 Query: 299 ------NSDG----RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 G R+RG++ R + Q +P+P L Sbjct: 1771 YAEAVSYPGGLVLKRIRGSINQTC-----RLAMDEPNLQCVPKPRAYKVLLTPG---ELG 1822 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-ETGED 407 S S + +R+ +A G L+ AD IE R++A +G+ + F E G D Sbjct: 1823 SAASGASAHADRTANLRAAFVAPPGCVLLSADYRQIEFRLMAHFSGDPGLARVFSEDGAD 1882 Query: 408 LYVTTYARSFNVAPAQ-------------VTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + A+ Q VT+ QR K + L Y GA Sbjct: 1883 PFRLLAAQWLGAPQEQARPRGWLGRGRRGVTQQQRDHAKQLTYGLLYGMGAAKLADE--- 1939 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L + E + + + Sbjct: 1940 --LGCSVAEARTAQEKFRASMPGIEAWQARVVAECRRLGYVETL---------------- 1981 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 A +RR +P + + GR + Sbjct: 1982 -------------------------AGRRRYLPNINCR-----------DGRKRAAAERQ 2005 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------------- 620 + + Q + D+ M+ Sbjct: 2006 AKNT----------------------VCQGSAADLAKAAMVAIHTRLAAWLALGSGGNCG 2043 Query: 621 ---------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTS-NPSWAKGLPLKAEGYE 669 +VL +HDE + E + + L M +PL+ Sbjct: 2044 CGGGPGGGPAARLVLQIHDEFLLEVAEPLLEPVARLVRDCMEGLASGVRLRVPLRVRLAA 2103 Query: 670 SKRYR 674 + Sbjct: 2104 GPSWG 2108 >gi|260816346|ref|XP_002602932.1| hypothetical protein BRAFLDRAFT_251779 [Branchiostoma floridae] gi|229288246|gb|EEN58944.1| hypothetical protein BRAFLDRAFT_251779 [Branchiostoma floridae] Length = 2215 Score = 188 bits (476), Expect = 4e-45, Method: Composition-based stats. Identities = 93/690 (13%), Positives = 198/690 (28%), Gaps = 109/690 (15%) Query: 33 FAFGFDDHPVELWDCVHD---PVMPQVLKEALENTDV--TIVAHNSYFERTVLKACFNLD 87 A + + +K LE DV + V + + L + Sbjct: 1564 IAVAYTTDEMIPPPLDDRLPVEERLHNIKSVLEKGDVCSSQVLFDLKPQYKALALGCGIT 1623 Query: 88 IPIHRWICTLVLARSNGLPSALKA-VGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + + V + +K+ G + + Q+ + L F G + + Sbjct: 1624 MN-GDFEDPKVADWLLDPGAKVKSFHGTVQRFTPQESYLLQGLGGCFGVGSLAMTVQNSG 1682 Query: 147 KPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 R A + + ++ E E + G Sbjct: 1683 SGRMRAALECVLTFHMMEELDKLLEAQGLSTAFRDVEMPSLVTLARMELNGAGFSPVECE 1742 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL-----------EDL 254 T QI+ + L+++ L + + + LFLE L Sbjct: 1743 TQCQIMQAKLRMLEEQAYQLAGHT-FALTSPDDIAQVLFLELKLPANGDPSSTTNPQPRK 1801 Query: 255 T-------------E--TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 T + +T + VL KK + R ++ + L + Sbjct: 1802 TLGTARPARGRKPLKHLSTSKDVLEKLKKFHALPGVILEWRRISNSL-TKVVFPLQKEKV 1860 Query: 300 SDGRLRGTLQFLGA---SRTGRWSGCVFPPQNLPRP-------------------SRSHE 337 + RL + + TGR + QN+P+ + S Sbjct: 1861 YNPRLNMDRIYGNCDLHTATGRVTFHDPNLQNIPKDFEIEMPTIIGDSPPPGCGETVSKR 1920 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + +++ Q S +R I +G L+ AD + +E R++A ++ + Sbjct: 1921 KGRKVVRRTDGRRVESDGAGQAFSVSLRHAFIPFQGGVLLAADYSQLELRIIAHLSQDSK 1980 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + +G+D++ ++ VA V+ R K + + Y GAKA + L Sbjct: 1981 LTQVLNSGQDVFKAIASQWKGVAMEDVSDKLRQQAKQLCYGMIYGIGAKALGE-----QL 2035 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 ++ + ++ + + + G R+ + Sbjct: 2036 GVDEEEGACFIETFKSKYTGMRRYLHTTVDQCKKDGFVQTMAGR---------RRYLPGI 2086 Query: 518 SELWNELH-QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 +E + + A Q + A +V + + L P+ R +D Sbjct: 2087 TEGNHHVRCHAERQAVNTTVQGSAADLVKKAMVSIDQKLQKLF---PATRRSHRQD---- 2139 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 + +++ + G ++L +HDE++ E Sbjct: 2140 ----TQKRSRRSQQPSSPP------------------------RGAYLILQLHDELIYEV 2171 Query: 637 PDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665 D + + M + + LP+K Sbjct: 2172 RREDVQQVAQIVKHEMENAVKLSVVLPVKV 2201 >gi|148705497|gb|EDL37444.1| DNA polymerase N [Mus musculus] Length = 467 Score = 188 bits (476), Expect = 4e-45, Method: Composition-based stats. Identities = 74/541 (13%), Positives = 155/541 (28%), Gaps = 129/541 (23%) Query: 166 TVTREIFKRLEPLSSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 +T ++ +L+ + L + + + VD + ++ +L+ Sbjct: 12 DLTMDLCSKLKAYGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELE 71 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----------TTCQRVLSSNKK 268 QE + +L+ LF + LHL + +T + + Sbjct: 72 QEAHFVAG-EQFLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMTQWRTS 130 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 P + + L L+ +++S T G + TGR S Q Sbjct: 131 GVPAGPHCCATTADSCLLSWLYPIGLLGSISS------TWNQTG-TVTGRLSAKHPNIQG 183 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 + + + ++T P R+ ++SEG + AD + IE R+ Sbjct: 184 ISKHPIKISKPWNFKGKEEETVTISP----------RTLFVSSEGHTFLAADFSQIELRI 233 Query: 389 LAWMAGEQWKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 LA ++G+ LK F+ +D++ T ++ ++ +VT R K + ++ Y Sbjct: 234 LAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYG---- 289 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 A Sbjct: 290 ----------------------------------------AGKERLAACLGVTVLEATHF 309 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + + QK+ ++ + + + GR Sbjct: 310 LERFLQKYKKIKDFAQTVIGQCHSA--------------------------GYVTSILGR 343 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620 + Q R+ +VQ + D+ M+ + A Sbjct: 344 RRPLPRICAQDQ---QLRAQAERQA------VNFVVQGSAADLCKLAMIRISTAVATSPT 394 Query: 621 -GYDIVLTVHDEIVCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRY 673 +V +HDE++ E DT A+++ +M +PLK + + Sbjct: 395 LTARLVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 454 Query: 674 R 674 Sbjct: 455 G 455 >gi|12657895|ref|NP_075308.1| gp41 [Mycobacterium phage Bxb1] gi|12584036|gb|AAG59746.1| gp41 [Mycobacterium phage Bxb1] Length = 608 Score = 188 bits (476), Expect = 4e-45, Method: Composition-based stats. Identities = 114/696 (16%), Positives = 204/696 (29%), Gaps = 171/696 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L +D ET + Y D + L FG + + V AL Sbjct: 36 RILGLDTETTD--------LGIYKPDFGIRLIQFG-NPWESWVLPVERGGVFVGAAVTAL 86 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKA 111 + V HN+ F+ V++ + + + T + + L+ Sbjct: 87 Q-KVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEE 145 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + + EE K +AR K D+ + Y D + + Sbjct: 146 LTKFY-IDPVTAEEVKASMARLAKKHKTT--KDKIWALVDLDDPDYELYAGMDTILVSRL 202 Query: 172 FKRLEPL--------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 ++ PL E +L + + G+ +DV + L+ + + Sbjct: 203 LGKVAPLVPEPSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVAR 262 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNN 279 V S EKL L TG+ ++ T T ++V L + + + Sbjct: 263 --YAYGVDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAIE 319 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + + +E +++ R+ + L A RT R S QNLP Sbjct: 320 AKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTNNPSAQNLPAGD------ 372 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 VR C +A G+ +V D E RVLA +A ++ + Sbjct: 373 ----------------------WMVRRCFLADPGQLMVSVDYQAQELRVLAALANDRTMI 410 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ DL+ T + R +GK++ A + G A Sbjct: 411 QAFKDNADLHQITA---------DASGVDRKVGKMVNFAYVFGSGPSTIAAQA------- 454 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 +RV + Q + V+ Sbjct: 455 -------------------------------------GITFPEAKRVIAGFEQSYPEVTA 477 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 L L + N ++ P+GR L Sbjct: 478 LSKSLQREA--------------------------ANLGYVITPTGRRLPVDPDR----- 506 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV--LTVHDEIVCETP 637 G +VQ+ SRD+ A ++ +AG + L +HDE++ P Sbjct: 507 --------------GYAALNYMVQSTSRDVTASAVLRLHEAGMTPMIRLVIHDEVLASVP 552 Query: 638 -DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672 E A + +M +G+ + + R Sbjct: 553 EAEAEATAKEIGRIMEQTF---RGVLINTDPEVGGR 585 >gi|301786873|ref|XP_002928855.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Ailuropoda melanoleuca] Length = 2634 Score = 187 bits (475), Expect = 5e-45, Method: Composition-based stats. Identities = 100/798 (12%), Positives = 197/798 (24%), Gaps = 229/798 (28%) Query: 9 ETRSPIDLTKCGIC-KYAEDVCVILFAFGFDDHPVELWDC----VHDP------------ 51 ET + G+ K +D+ ++ A + + H Sbjct: 1927 ET----PIRDYGVPVKGCDDILLVGLAVCWGGRDAYYFSLQKEQTHPEISSSLVAPSLDP 1982 Query: 52 --VMPQVLKEALE------NTDVTIVAHNSYFE----RTVLKACFNLDIPIHRWICTLVL 99 + + + L + + +++ ++ +L + + + V Sbjct: 1983 GLTVKERIWYLLSCFQEESDKERSVII----YDFIQSYKILLLSCGISLE-QSYEDPKVA 2037 Query: 100 ARSNGLPSA----LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 S V L ++ + G + E+ Sbjct: 2038 CWLLDPDSKEPTLHSIVSSFLPHELPLLDGIETGQGIQSLGLNVNSEHSGRYRASVESIL 2097 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 F + + + E Y + G A + I+ + Sbjct: 2098 TFN--AMNQLNSLLKKENLKDVFCKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKL 2155 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE----------------------- 252 ++ + L S + + LFLE L Sbjct: 2156 DAIETQAYQLAGHS-FSFTSSDDIAEVLFLELKLPPNGEIKNQNSKKTLGSTRRGNDNGR 2214 Query: 253 --DLTE--TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDG 302 L + +T + VL+ K L P + R + A+ K+ + Sbjct: 2215 KLKLGKQFSTSKDVLNKLKALHPLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGME 2272 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPR--------------------------PSRSH 336 R+ Q A+ GR + QN+PR Sbjct: 2273 RIYPVSQSHTAT--GRVTFTEPNIQNVPRDFEIKMPTVVGESPPSQALGKGLLPMNRGKE 2330 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + H D S +R + G ++ AD + +E R+LA ++ ++ Sbjct: 2331 KSCGINSGHQAQMEERASDRGMPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSHDR 2390 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++ TG D++ + A + P V D R K + + Y GAK+ + Sbjct: 2391 RLIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----Q 2445 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + +S + +F R +N Sbjct: 2446 MGIKENDAACYIDSFKSRYTGINHFMRETVKNCKRDGFVQTI------------------ 2487 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 +RR +P + Y Sbjct: 2488 -----------------------LGRRRYLPGINDNN---------------PYHKAHAE 2509 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----------------- 619 R +NTT VQ + DI+ +N K Sbjct: 2510 RQAINTT------------------VQGSAADIVKVATVNIQKQLETFHSTFKSHGHREG 2551 Query: 620 ----------------------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPS 656 G +L +HDE++ E + D + + M S Sbjct: 2552 MLQSERTGLLPKRKLQGVFCPIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAME 2611 Query: 657 WAKGLPLKAEGYESKRYR 674 + LK + + Sbjct: 2612 --LSVKLKVKVKIGASWG 2627 >gi|158079357|ref|YP_001504170.1| putative DNA polymerase [Enterococcus phage phiEF24C] gi|157890201|dbj|BAF81329.1| putative DNA polymerase [Enterococcus phage phiEF24C] Length = 1023 Score = 187 bits (475), Expect = 5e-45, Method: Composition-based stats. Identities = 109/842 (12%), Positives = 186/842 (22%), Gaps = 283/842 (33%) Query: 7 DFETRSPI-DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------VMPQV 56 D ET S DL ++ + + + H + + Sbjct: 227 DLETNSLRGDLLGAKP---------LVMSMSWLEGQGVTIPLEHHEAKWSPEELNEIYDL 277 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL----------------- 99 ++ L + V N F+ L T + Sbjct: 278 FEKFLADRQQPKVGQNIQFDIRFLMNTKGFT-EFEDNRDTKIAYYLIVSQKVDTSKRLSD 336 Query: 100 -ARSNGLPSALKAVGEALK--LSSQKMEEGKELIARFCKGET------------------ 138 A E K + K I F + E Sbjct: 337 IAYELTDMGGYDEPLEQYKKQYKEDYIARKKAEIDAFKEAEKERVECEFKIAMDRYKQEV 396 Query: 139 -------------------------------HECLYDRNKPNHREAWRLFGEYCKGDVTV 167 + N + Y GDV Sbjct: 397 KEAKLIGKPTKSIIKPVKEKVVVPKKSDIKLINEIDGGNFNYDWIPLEIMHPYASGDVDC 456 Query: 168 TREIFKRLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERT 216 I+ L + ++ L I G +D A + I E Sbjct: 457 CLRIYNVLYKRIEEHPKMLELWLGFYPRLTATLAHIEASGVLLDSEYAELVENIYTEEEH 516 Query: 217 KLDQELESLTYGLV--------------------------------------------SS 232 +L E+ L Sbjct: 517 RLLNEIRKLPEVKEVEDEHMMFYKEGLKEMTKPVKDRDASVARLRDKYKITDSENKVHFK 576 Query: 233 SRCLEKLKTWLFLETGLHLE------DL---------------TETTCQRVLSSNKKLTP 271 E LF GL L T + L+ + P Sbjct: 577 PSSSEHKGRLLFKVMGLTLPYDKESIKKETFDNGVPEHQLTWRDYKTDKHALAYIAENYP 636 Query: 272 QAIQ---VFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 +A + + + L + N DG + G+ G T R S Q Sbjct: 637 EAKHVAELLLEYSKVNTLKNNFAQKLPKLASNKDGMIHGSYNSTGTEST-RLSANNPNMQ 695 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 L D I R+ EG ++ D + +E R Sbjct: 696 QL---------------SSKVGDPRRFDYKYPIKRLFRTRF---EGGGMLQLDYSALEMR 737 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +L +A ++ +AF GED++ T + + + V KD R K + + Sbjct: 738 ILGLIAKDKAMTQAFINGEDMHEATASLVWKLPKDNVPKDMRQRAKSVNFGI-------- 789 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 E+ A + ER+ Sbjct: 790 ------------------------------------AYGESPFSIAPKLGVTVEEAERIF 813 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + + + E HQ ++ G + R + KDK Sbjct: 814 EEYFASKPSIKQFIEETHQFAQRY---GYVETLQGHRRLLRDSFSKDKKVF--------- 861 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAG 621 + K I+Q + M + Sbjct: 862 ---------NGAMR--------------KSVNTIIQGTGAYLTNLSMVYIDEYIRKHNKR 898 Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNP------SW---AKGLPLKAEGYESK 671 IV+TVHD +V + P + + + +M + P W P+ A+ + Sbjct: 899 SRIVITVHDSLVIDCPRDEVDEMAKVAKYIMENLPIDFLMIEWEGKEMRYPIVADVEIGE 958 Query: 672 RY 673 Y Sbjct: 959 NY 960 >gi|139394648|ref|NP_955452.3| DNA polymerase theta [Homo sapiens] gi|325511332|sp|O75417|DPOLQ_HUMAN RecName: Full=DNA polymerase theta; AltName: Full=DNA polymerase eta gi|225000062|gb|AAI72289.1| Polymerase (DNA directed), theta [synthetic construct] Length = 2590 Score = 187 bits (474), Expect = 6e-45, Method: Composition-based stats. Identities = 95/776 (12%), Positives = 189/776 (24%), Gaps = 213/776 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74 +D V+ A + + + +P L +L D + Sbjct: 1895 CDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1954 Query: 75 ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117 ++ +L + + + V S L ++ + Sbjct: 1955 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 2013 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + EG E + + L + + + Sbjct: 2014 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 2072 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E Y + G A + I+ + ++ + L S + Sbjct: 2073 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 2131 Query: 238 KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270 + LFLE L ++ + +T + VL+ K L Sbjct: 2132 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 2191 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325 P + R + + + L + R+ Q A+ GR + Sbjct: 2192 PLPGLILEWRRITN-AITKVVFPLQREKCLNPFLGMERIYPVSQSHTAT--GRITFTEPN 2248 Query: 326 PQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358 QN+PR + + D Sbjct: 2249 IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGM 2308 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 S +R + G ++ AD + +E R+LA ++ ++ ++ TG D++ + A Sbjct: 2309 PFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKM 2368 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 + P V D R K + + Y GAK+ + + + +S + Sbjct: 2369 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 2423 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 F +N +G R+ + + Sbjct: 2424 NQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------- 2455 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 + YR R +NT Sbjct: 2456 ----------------------------NNPYRKAHAERQAINT---------------- 2471 Query: 599 ENIVQAVSRDILAEGMMNATK--------------------------------------- 619 IVQ + DI+ +N K Sbjct: 2472 --IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLSRKRKLQGMFCPI 2529 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M S + LK + + Sbjct: 2530 RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2583 >gi|119599917|gb|EAW79511.1| polymerase (DNA directed), theta, isoform CRA_b [Homo sapiens] Length = 1762 Score = 187 bits (474), Expect = 6e-45, Method: Composition-based stats. Identities = 95/776 (12%), Positives = 189/776 (24%), Gaps = 213/776 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74 +D V+ A + + + +P L +L D + Sbjct: 1067 CDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1126 Query: 75 ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117 ++ +L + + + V S L ++ + Sbjct: 1127 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 1185 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + EG E + + L + + + Sbjct: 1186 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 1244 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E Y + G A + I+ + ++ + L S + Sbjct: 1245 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 1303 Query: 238 KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270 + LFLE L ++ + +T + VL+ K L Sbjct: 1304 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 1363 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325 P + R + + + L + R+ Q A+ GR + Sbjct: 1364 PLPGLILEWRRITN-AITKVVFPLQREKCLNPFLGMERIYPVSQSHTAT--GRITFTEPN 1420 Query: 326 PQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358 QN+PR + + D Sbjct: 1421 IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGM 1480 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 S +R + G ++ AD + +E R+LA ++ ++ ++ TG D++ + A Sbjct: 1481 PFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKM 1540 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 + P V D R K + + Y GAK+ + + + +S + Sbjct: 1541 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 1595 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 F +N +G R+ + + Sbjct: 1596 NQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------- 1627 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 + YR R +NT Sbjct: 1628 ----------------------------NNPYRKAHAERQAINT---------------- 1643 Query: 599 ENIVQAVSRDILAEGMMNATK--------------------------------------- 619 IVQ + DI+ +N K Sbjct: 1644 --IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPI 1701 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M S + LK + + Sbjct: 1702 RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 1755 >gi|119599919|gb|EAW79513.1| polymerase (DNA directed), theta, isoform CRA_d [Homo sapiens] gi|119599920|gb|EAW79514.1| polymerase (DNA directed), theta, isoform CRA_d [Homo sapiens] Length = 2270 Score = 187 bits (474), Expect = 6e-45, Method: Composition-based stats. Identities = 95/776 (12%), Positives = 189/776 (24%), Gaps = 213/776 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74 +D V+ A + + + +P L +L D + Sbjct: 1575 CDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1634 Query: 75 ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117 ++ +L + + + V S L ++ + Sbjct: 1635 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 1693 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + EG E + + L + + + Sbjct: 1694 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 1752 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E Y + G A + I+ + ++ + L S + Sbjct: 1753 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 1811 Query: 238 KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270 + LFLE L ++ + +T + VL+ K L Sbjct: 1812 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 1871 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325 P + R + + + L + R+ Q A+ GR + Sbjct: 1872 PLPGLILEWRRITN-AITKVVFPLQREKCLNPFLGMERIYPVSQSHTAT--GRITFTEPN 1928 Query: 326 PQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358 QN+PR + + D Sbjct: 1929 IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGM 1988 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 S +R + G ++ AD + +E R+LA ++ ++ ++ TG D++ + A Sbjct: 1989 PFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKM 2048 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 + P V D R K + + Y GAK+ + + + +S + Sbjct: 2049 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 2103 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 F +N +G R+ + + Sbjct: 2104 NQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------- 2135 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 + YR R +NT Sbjct: 2136 ----------------------------NNPYRKAHAERQAINT---------------- 2151 Query: 599 ENIVQAVSRDILAEGMMNATK--------------------------------------- 619 IVQ + DI+ +N K Sbjct: 2152 --IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPI 2209 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M S + LK + + Sbjct: 2210 RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2263 >gi|119599916|gb|EAW79510.1| polymerase (DNA directed), theta, isoform CRA_a [Homo sapiens] Length = 2725 Score = 187 bits (474), Expect = 6e-45, Method: Composition-based stats. Identities = 95/776 (12%), Positives = 189/776 (24%), Gaps = 213/776 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74 +D V+ A + + + +P L +L D + Sbjct: 2030 CDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 2089 Query: 75 ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117 ++ +L + + + V S L ++ + Sbjct: 2090 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 2148 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + EG E + + L + + + Sbjct: 2149 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 2207 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E Y + G A + I+ + ++ + L S + Sbjct: 2208 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 2266 Query: 238 KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270 + LFLE L ++ + +T + VL+ K L Sbjct: 2267 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 2326 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325 P + R + + + L + R+ Q A+ GR + Sbjct: 2327 PLPGLILEWRRITN-AITKVVFPLQREKCLNPFLGMERIYPVSQSHTAT--GRITFTEPN 2383 Query: 326 PQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358 QN+PR + + D Sbjct: 2384 IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGM 2443 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 S +R + G ++ AD + +E R+LA ++ ++ ++ TG D++ + A Sbjct: 2444 PFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKM 2503 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 + P V D R K + + Y GAK+ + + + +S + Sbjct: 2504 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 2558 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 F +N +G R+ + + Sbjct: 2559 NQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------- 2590 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 + YR R +NT Sbjct: 2591 ----------------------------NNPYRKAHAERQAINT---------------- 2606 Query: 599 ENIVQAVSRDILAEGMMNATK--------------------------------------- 619 IVQ + DI+ +N K Sbjct: 2607 --IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPI 2664 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M S + LK + + Sbjct: 2665 RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2718 >gi|62089320|dbj|BAD93104.1| DNA polymerase theta variant [Homo sapiens] Length = 2214 Score = 187 bits (474), Expect = 6e-45, Method: Composition-based stats. Identities = 95/776 (12%), Positives = 189/776 (24%), Gaps = 213/776 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74 +D V+ A + + + +P L +L D + Sbjct: 1519 CDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1578 Query: 75 ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117 ++ +L + + + V S L ++ + Sbjct: 1579 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 1637 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + EG E + + L + + + Sbjct: 1638 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 1696 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E Y + G A + I+ + ++ + L S + Sbjct: 1697 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 1755 Query: 238 KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270 + LFLE L ++ + +T + VL+ K L Sbjct: 1756 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 1815 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325 P + R + + + L + R+ Q A+ GR + Sbjct: 1816 PLPGLILEWRRITN-AITKVVFPLQREKCLNPFLGMERIYPVSQSHTAT--GRITFTEPN 1872 Query: 326 PQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358 QN+PR + + D Sbjct: 1873 IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGM 1932 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 S +R + G ++ AD + +E R+LA ++ ++ ++ TG D++ + A Sbjct: 1933 PFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKM 1992 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 + P V D R K + + Y GAK+ + + + +S + Sbjct: 1993 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 2047 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 F +N +G R+ + + Sbjct: 2048 NQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------- 2079 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 + YR R +NT Sbjct: 2080 ----------------------------NNPYRKAHAERQAINT---------------- 2095 Query: 599 ENIVQAVSRDILAEGMMNATK--------------------------------------- 619 IVQ + DI+ +N K Sbjct: 2096 --IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPI 2153 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M S + LK + + Sbjct: 2154 RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2207 >gi|76364226|gb|AAR08421.2| DNA polymerase theta [Homo sapiens] Length = 2590 Score = 187 bits (474), Expect = 6e-45, Method: Composition-based stats. Identities = 95/776 (12%), Positives = 189/776 (24%), Gaps = 213/776 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74 +D V+ A + + + +P L +L D + Sbjct: 1895 CDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1954 Query: 75 ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117 ++ +L + + + V S L ++ + Sbjct: 1955 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 2013 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + EG E + + L + + + Sbjct: 2014 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 2072 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E Y + G A + I+ + ++ + L S + Sbjct: 2073 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 2131 Query: 238 KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270 + LFLE L ++ + +T + VL+ K L Sbjct: 2132 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 2191 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325 P + R + + + L + R+ Q A+ GR + Sbjct: 2192 PLPGLILEWRRITN-AITKVVFPLQREKCLNPFLGMERIYPVSQSHTAT--GRITFTEPN 2248 Query: 326 PQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358 QN+PR + + D Sbjct: 2249 IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGM 2308 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 S +R + G ++ AD + +E R+LA ++ ++ ++ TG D++ + A Sbjct: 2309 PFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKM 2368 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 + P V D R K + + Y GAK+ + + + +S + Sbjct: 2369 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 2423 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 F +N +G R+ + + Sbjct: 2424 NQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------- 2455 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 + YR R +NT Sbjct: 2456 ----------------------------NNPYRKAHAERQAINT---------------- 2471 Query: 599 ENIVQAVSRDILAEGMMNATK--------------------------------------- 619 IVQ + DI+ +N K Sbjct: 2472 --IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPI 2529 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M S + LK + + Sbjct: 2530 RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2583 >gi|297285105|ref|XP_001111254.2| PREDICTED: DNA polymerase theta isoform 2 [Macaca mulatta] Length = 2672 Score = 187 bits (474), Expect = 7e-45, Method: Composition-based stats. Identities = 96/778 (12%), Positives = 192/778 (24%), Gaps = 217/778 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDP---VMPQVLKEALENTDVTI---VAHNSY---- 74 +D+ V+ A + + + + L + +T+ + H Sbjct: 1977 CDDILVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRIWH-LQSCLR 2035 Query: 75 -----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEAL 116 ++ +L + + + V S L ++ + Sbjct: 2036 KESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSF 2094 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + EG E + + L + + + Sbjct: 2095 LPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQD 2153 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E Y + G A I+ + ++ + L S Sbjct: 2154 VFRKVEMPSQYCLALLELNGIGFSTAECEGQKHIMQAKLDAIETQAYQLAGHS-FSFTSS 2212 Query: 237 EKLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKL 269 + + LFLE L ++ + +T + VL+ K L Sbjct: 2213 DDIAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLKAL 2272 Query: 270 TPQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 P + R + A+ K+ + R+ Q A+ GR + Sbjct: 2273 HPLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRITFTE 2328 Query: 324 FPPQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDP 356 QN+PR +S + D Sbjct: 2329 PNIQNVPRDFEIKMPTLVGESPPSQAIGKGLLPMGRGKSKKGCSLNPGRQAQMEERAADR 2388 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 S +R + G ++ AD + +E R+LA ++ ++ ++ TG D++ + A Sbjct: 2389 GMPFSISMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEW 2448 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 + P V D R K + + Y GAK+ + + + +S + Sbjct: 2449 KMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYT 2503 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 F R +N +G R+ + + Sbjct: 2504 GINQFMRETVKNCKRDGFVQTILGR---------RRYLPGIKD----------------- 2537 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 + Y R +NTT Sbjct: 2538 ------------------------------NNPYHKAHAERQAINTT------------- 2554 Query: 597 LTENIVQAVSRDILAEGMMNATK------------------------------------- 619 VQ + DI+ +N K Sbjct: 2555 -----VQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLLRKRKLQGMFC 2609 Query: 620 --AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M S + LK + + Sbjct: 2610 PVRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2665 >gi|4163931|gb|AAD05272.1| DNA polymerase eta [Homo sapiens] Length = 1154 Score = 186 bits (473), Expect = 7e-45, Method: Composition-based stats. Identities = 95/776 (12%), Positives = 189/776 (24%), Gaps = 213/776 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74 +D V+ A + + + +P L +L D + Sbjct: 461 CDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 520 Query: 75 ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117 ++ +L + + + V S L ++ + Sbjct: 521 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFF 579 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + EG E + + L + + + Sbjct: 580 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 638 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E Y + G A + I+ + ++ + L S + Sbjct: 639 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 697 Query: 238 KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270 + LFLE L ++ + +T + VL+ K L Sbjct: 698 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 757 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325 P + R + + + L + R+ Q A+ GR + Sbjct: 758 PLPGLILEWRRITN-AITKVVFPLQREKCLNPFLGMERIYPVSQSHTAT--GRITFTEPN 814 Query: 326 PQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358 QN+PR + + D Sbjct: 815 IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGM 874 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 S +R + G ++ AD + +E R+LA ++ ++ ++ TG D++ + A Sbjct: 875 PFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKM 934 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 + P V D R K + + Y GAK+ + + + +S + Sbjct: 935 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 989 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 F +N +G R+ + + Sbjct: 990 NQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------- 1021 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 + YR R +NT Sbjct: 1022 ----------------------------NNPYRKAHAERQAINT---------------- 1037 Query: 599 ENIVQAVSRDILAEGMMNATK--------------------------------------- 619 IVQ + DI+ +N K Sbjct: 1038 --IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLSRKRKLQGMFCPI 1095 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M S + LK + + Sbjct: 1096 RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 1149 >gi|298240|gb|AAB25243.1| DNA polymerase homolog [bacterium-like organism, citrus greening disease-associated, Peptide, 207 aa] Length = 207 Score = 186 bits (473), Expect = 9e-45, Method: Composition-based stats. Identities = 106/204 (51%), Positives = 127/204 (62%), Gaps = 2/204 (0%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 LFID ETRSP L K G+ YAE + L A+ +D PV+LWD +P L + L Sbjct: 4 KLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQYLR 63 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121 + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL+ Sbjct: 64 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPEHL 123 Query: 122 -KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 K EEGK LIARFCKG YD + NH +AW LF EYCK DV TRE+FK L PL+ Sbjct: 124 TKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPLNP 183 Query: 181 KEQELWYLDQTINDRGYCVDVALA 204 +E+ LW LDQ INDRGY +D+ L Sbjct: 184 EERTLWLLDQEINDRGYRIDLDLV 207 >gi|242083352|ref|XP_002442101.1| hypothetical protein SORBIDRAFT_08g011950 [Sorghum bicolor] gi|241942794|gb|EES15939.1| hypothetical protein SORBIDRAFT_08g011950 [Sorghum bicolor] Length = 917 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 92/705 (13%), Positives = 202/705 (28%), Gaps = 130/705 (18%) Query: 28 VCVILFAFGFDDHPVELWDCVHD----------------PVMPQVLKEALENTDVTIVAH 71 V A +++ P+ + D + + + ++ V + Sbjct: 275 FEVFGLAVCWENSPIYYCNFPKDLVTTSNNDFREMWGNFQRRWEKITDIMQQKSVQKMTW 334 Query: 72 NSYFERTVLKA-----------CFNLDI-PIHRWICTLVLARSNGLPSA----LK--AVG 113 N + LK+ + + + + P + L + Sbjct: 335 NLKIQIQALKSPYISCQRLERFHLDHKMLDKVEVLDN---SYVLLSPVSVYNGLDICLLA 391 Query: 114 EALKLSSQKME--EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 L + ++ + R E R+ + + C TR + Sbjct: 392 WVLWPDEESRTVPNLEKFVKRRLHSEAAAAAN-RDGRWRNQMHKAAHNGCCRRSAQTRAL 450 Query: 172 FKRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L+ L ++ L + + G D+ I+ + +L++E Sbjct: 451 YTVLKKLLTQNLSDLVETIEAPLVNVLADMELWGIGADMDACLHARHIITKKLKELEKEA 510 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLED---LTE---TTCQRVLSSNKKLTPQAIQV 276 L S + L++ L + + +T ++ L + P + Sbjct: 511 YRLAG-KNFSLNATADIADILYVHLKLPVPKGCEKGKLHPSTDKQSLDHLRDQHPIIPVI 569 Query: 277 FNNRMRASRSAVLKLNTL---VEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRP 332 +R ++ L ++ + R + ++ TGR S Q + Sbjct: 570 KEHR-TLAKLLNGTLWSICSRAQLCTQSQRYIIHGNWLQTSTATGRLSMEEPNLQCV--- 625 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAW 391 E ++ VR I E V AD + IE R++A Sbjct: 626 -----EHLVEFDTGKSNKDYCMSVDDHHKINVRDFFIPTKENWLFVTADYSQIELRLMAH 680 Query: 392 MAGEQWKLK-AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 + + ++ + D++ +R + A ++ +R K + + Y GA + + Sbjct: 681 FSKDPTLVELLSKPDGDVFTMIASRWADKEEALISSKERENTKRLIYGILYGMGANSLAE 740 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 L +T K S + ++ + + + + +G R Sbjct: 741 -----QLECSTEDAAQKIQSFRRLFPGVSSWLHEVVLSCRQKGYVETLLGR--RRFLTKI 793 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 +S+ + + +I G A K + Sbjct: 794 TAGNSKEKA---KAQRQAVNSICQGSAADIIKVAMI----------------------RL 828 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 V NR+ +T ++TR+++ G ++L VHD Sbjct: 829 HSVITNRTRATDSTDEVTRKFSEFGGQC------------------------HLILQVHD 864 Query: 631 EIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRYR 674 E+V E A L + M S +PL+ + K + Sbjct: 865 ELVLEVVPCMVAQAGRLLQICMEEAASLL--VPLRTKIKVGKTWG 907 >gi|194742333|ref|XP_001953657.1| GF17871 [Drosophila ananassae] gi|190626694|gb|EDV42218.1| GF17871 [Drosophila ananassae] Length = 2135 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 82/672 (12%), Positives = 185/672 (27%), Gaps = 149/672 (22%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVM---------PQVLKEALENTDVTIVAHNSYFE 76 + + +F D H + Q + + TD+T+V H + + Sbjct: 1565 DSTYIDCLSFCVDSH--YVVHFKMQEEKGRGVSTSLKLQEISKIFARTDLTLVMHKTKDQ 1622 Query: 77 RTVLKACFNLDIPIH--RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134 V+ ++ ++ V + + Q E L+ Sbjct: 1623 LKVILQAIP-ELKTIAVKFEDPNVASWLMQPDRN----CSFQNMCQQYAPECLNLLNLCG 1677 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYL 188 G + R E V + E + ++ E L + Sbjct: 1678 SGLGYTSYGLDASSEVSAQVRAQVE-ACVSVHILNGQMKSLEEHQFIKVFRDNEMPLCLI 1736 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G+ V L + KL+ ++ L + + + L + Sbjct: 1737 LAQMEVIGFPVKEHRLGNLISQIAGSMKKLEAKIFELNGSR-FNINSSQAVAKVLGIHRK 1795 Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 +T + VL + + + + V + L++ + R+ G Sbjct: 1796 ---PTGRVSTSREVLERLEAP---IANLICQYRKLNALLVKNVQPLMK-CCLNNRIHGHS 1848 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ GR S QN+ + + I RS Sbjct: 1849 ITNTAT--GRISMAEPNLQNVAKNFVVDVQDRGAIVS------------------CRSAF 1888 Query: 369 IASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + + + L+ AD +E R+LA ++ ++ + A + D++ + A + ++V+ Sbjct: 1889 MPMDSTRCLLSADFCQLEMRILAHLSQDKALVAAMNSPRDIFTSISAHWHRMNESEVSDQ 1948 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K + + Y Sbjct: 1949 LREGTKKICYGIIYGMS------------------------------------------- 1965 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + A E E + + + + + N L + Sbjct: 1966 -MRKLADELNVTEQEAEVLSEQFHSNYPGIRSYTNRLIKYAR------------------ 2006 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + + +GR ++ + + T ++ R+ + +Q + Sbjct: 2007 --------HKGYVETITGRRRYLENIRSEDAG---TRKKAERQA------VNSTIQGSAA 2049 Query: 608 DILAEGMMN-------------ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTS 653 DI ++ + ++VL +HDE++ E P + L +M + Sbjct: 2050 DIAKVAIIKSVKYMRRHCQKLFIDENSVNLVLHIHDELMFEVPADKAKKIAKLLKVVMEA 2109 Query: 654 NPSWAKGLPLKA 665 + +PLK Sbjct: 2110 SAR--LTVPLKV 2119 >gi|332225568|ref|XP_003261953.1| PREDICTED: DNA polymerase theta, partial [Nomascus leucogenys] Length = 2473 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 97/777 (12%), Positives = 191/777 (24%), Gaps = 215/777 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDP---VMPQVLKEALENTDVTI--VAHNSY----- 74 +D+ V+ A + + + + L + +T+ N Sbjct: 1778 CDDILVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWNLQSCLRK 1837 Query: 75 ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117 ++ +L + + + V S L ++ + Sbjct: 1838 ESDKERSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 1896 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + EG E + + L + + + Sbjct: 1897 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 1955 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E Y + G A + I+ + ++ + L S + Sbjct: 1956 FRKVEMPSQYCLALLELNGIGFSAAECESQKHIMQAKLDAIETQAYQLAGHS-FSLTSSD 2014 Query: 238 KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270 + LFLE L ++ + +T + VL+ K L Sbjct: 2015 DIAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLKALH 2074 Query: 271 PQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 P + R + A+ K+ + R+ Q A+ GR + Sbjct: 2075 PLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRITFIEP 2130 Query: 325 PPQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPL 357 QN+PR + + D Sbjct: 2131 NIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYTKGCSLNPRCQAQMEERAADRG 2190 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 S +R + G ++ AD + +E R+LA ++ ++ ++A TG D++ + A Sbjct: 2191 MPFSISMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQALNTGADVFRSIAAEWK 2250 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 + P V D R K + + Y GAK+ + + + +S + Sbjct: 2251 MIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTG 2305 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 F R +N Sbjct: 2306 INQFMRETVKNCKRDGFVQTI--------------------------------------- 2326 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 +RR +P + Y R +NTT Sbjct: 2327 --LGRRRYLPGIEDNN---------------PYHKAHAERQAINTT-------------- 2355 Query: 598 TENIVQAVSRDILAEGMMNATK-------------------------------------- 619 VQ + DI+ +N K Sbjct: 2356 ----VQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCP 2411 Query: 620 -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M S + LK + + Sbjct: 2412 IRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2466 >gi|261878885|ref|ZP_06005312.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361] gi|270334465|gb|EFA45251.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361] Length = 261 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 51/363 (14%), Positives = 93/363 (25%), Gaps = 113/363 (31%) Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P +E +R C I K Sbjct: 1 RLSSSDPNLQNIPVRDDDGKE-------------------------IRKCFIPEPSCKFF 35 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++ ++ ++AF G D++ T ++ + A +VT QR K Sbjct: 36 SADYSQIELRIMAHLSCDENMMEAFREGFDIHRATASKIWKEAMDEVTDSQRKQAKQAN- 94 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 G+ A + ++ Sbjct: 95 -------------FGIIYGITTYGLAQRMGIDNG-------------------------- 115 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 ++ + +V E + + + Sbjct: 116 ----EARQLIDDYFTTFPKVKEYMEKAKEIARE--------------------------R 145 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 GR D+ + T R +Q DI+ M+ Sbjct: 146 GYAETLFGRRRYLPDINSKN---GTVRGFAERNAINAP------IQGSEADIIKLAMIRI 196 Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYES 670 K ++L VHDE+ + + M + +PL AE Sbjct: 197 WKRFKKEGIRSRMILQVHDELNFSVYPDEAEKVEKIVLEEMQGA--YPLHVPLIAEAGWG 254 Query: 671 KRY 673 + Sbjct: 255 DNW 257 >gi|296226149|ref|XP_002807658.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Callithrix jacchus] Length = 2550 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 94/778 (12%), Positives = 192/778 (24%), Gaps = 217/778 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDP---VMPQVLKEALENTDVTI---VAHNSY---- 74 +D+ V+ A + + + + L + +T+ + H Sbjct: 1855 CDDILVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRIWH-LQSCLQ 1913 Query: 75 -----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEAL 116 ++ +L + + + V S L ++ + Sbjct: 1914 KESDEERSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSF 1972 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + EG E + + L + + + Sbjct: 1973 LPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQD 2031 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E Y + G A + I+ + ++ + L S Sbjct: 2032 VFRKVEMPSQYCLALLELNGIGFSTAECESQKHILQAKLDAIETQAYQLAGHS-FSFTSS 2090 Query: 237 EKLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKL 269 + + LFLE L ++ + +T + VL+ K L Sbjct: 2091 DDIAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLKAL 2150 Query: 270 TPQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 P + R + A+ K+ + R+ Q A+ GR + Sbjct: 2151 HPLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRITFTE 2206 Query: 324 FPPQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDP 356 QN+PR + + + Sbjct: 2207 PNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKIKKGWSLNPGCQAQMEERAAER 2266 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 S +R + G ++ AD + +E R+LA ++ ++ ++ +G D++ + A Sbjct: 2267 GMPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNSGADVFRSIAAEW 2326 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 + P V D R K + + Y GAK+ + + + +S + Sbjct: 2327 KMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYT 2381 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 F R +N +G R+ + E Sbjct: 2382 GINQFMRETVKNCKRDGFVQTILGR---------RRYLPGIKE----------------- 2415 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 + Y R +NTT Sbjct: 2416 ------------------------------NNPYHKAHAERQAINTT------------- 2432 Query: 597 LTENIVQAVSRDILAEGMMNATK------------------------------------- 619 VQ + DI+ +N K Sbjct: 2433 -----VQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLLPKRKLQGMFC 2487 Query: 620 --AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M S + LK + + Sbjct: 2488 PIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2543 >gi|302761166|ref|XP_002964005.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii] gi|300167734|gb|EFJ34338.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii] Length = 788 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 70/399 (17%), Positives = 118/399 (29%), Gaps = 83/399 (20%) Query: 286 SAVLKLNTLVE--AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + L + DGR+ +L + TGR S Q + S Sbjct: 458 LISNFIQPLQNGQILGPDGRVHCSLNIN--TETGRLSARRPNLQASLQRS---------- 505 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + + + L+ +R IA GK L+VAD +E R+LA M+G + L+AFE Sbjct: 506 ----SFLNINQPALEKDRYKIRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFE 561 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G D + T R + E+ L + G + Sbjct: 562 AGGDFHSRTALNM--------YPHVRKAVETGEVLLEWS-------------GEGKSPVP 600 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 L + NF + + + ++ W S V E + Sbjct: 601 LLKDKFGSERRKAKMLNFSIAYGKTAMGLSKDWKVSLYEAQQTLDLWYNDRSEVKEWQTD 660 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T + GRS D+ + S L Sbjct: 661 TIERARITK--------------------------RVHTLLGRSRHLPDINTSISVLRGH 694 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETP 637 L R VQ + D+ M+ + G+ ++L VHDE++ E P Sbjct: 695 ---LERAAINTP------VQGSAADVAMCAMLEIDRNSRLRELGWKLILQVHDEVILEGP 745 Query: 638 DTDEFNASML-YHLMTSNPSWA--KGLPLKAEGYESKRY 673 A + M+ + L + +K + Sbjct: 746 SESVEEAQEIVVKCMSFPFEGENFLKVNLDVDADHAKSW 784 Score = 96.3 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 83/302 (27%), Gaps = 58/302 (19%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFA------FGFDDHPVELW-DCVHDPV-MPQV 56 D E + ID+ K + F+ F +W D ++ + V Sbjct: 29 ACDTE-VADIDVKKESP---VGHGKLTCFSIYCGVNVDFGGGKSRVWVDLLNGGPGILDV 84 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-----LPSALKA 111 + EN ++ + HN F++ +L + + T+ LAR L +L+A Sbjct: 85 FRPYFENAEIKKIWHNYSFDKHILGNY-GIK-AAGFYADTMHLARLWDSARGGLGYSLEA 142 Query: 112 VGEALKLSSQ-----KMEEGKELIARFCKGETHECLYDRNKPNHREA------WRLFGEY 160 + K+ K+L A + + P E + Y Sbjct: 143 LTADPKVMDDRPLQNGKTSMKDLFAITNVKKDGSEGKLKVIPPVEELQTSKDTRDKWIYY 202 Query: 161 CKGDVTVTREIFKRLEPLSS--------------------KEQELWYLDQTINDRGYCVD 200 D T ++ L+ + + + G VD Sbjct: 203 SAHDSVCTWHLWSSLKKKLQKASWYMEGDKRGNMYQFYELYWRHFGDVLVQMEAEGMRVD 262 Query: 201 VALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 + ++ ++ + + + +++ LF G Sbjct: 263 TVHLAEVEKVALNQKQLSVSRFQKWASQYCPDAMYMNVCSDVQIRQILF---GGTSNKKD 319 Query: 256 ET 257 + Sbjct: 320 PS 321 >gi|302769001|ref|XP_002967920.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii] gi|300164658|gb|EFJ31267.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii] Length = 788 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 70/399 (17%), Positives = 118/399 (29%), Gaps = 83/399 (20%) Query: 286 SAVLKLNTLVE--AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + L + DGR+ +L + TGR S Q + S Sbjct: 458 LISNFIQPLQNGQILGPDGRVHCSLNIN--TETGRLSARRPNLQASLQRS---------- 505 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + + + L+ +R IA GK L+VAD +E R+LA M+G + L+AFE Sbjct: 506 ----SFLNINQPALEKDRYKIRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFE 561 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G D + T R + E+ L + G + Sbjct: 562 AGGDFHSRTALNM--------YPHVRKAVETGEVLLEWS-------------GEGKSPVP 600 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 L + NF + + + ++ W S V E + Sbjct: 601 LLKDKFGSERRKAKMLNFSIAYGKTAMGLSKDWKVSLYEAQQTLDLWYNDRSEVKEWQTD 660 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T + GRS D+ + S L Sbjct: 661 TIERARITK--------------------------RVHTLLGRSRHLPDINTSISVLRGH 694 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETP 637 L R VQ + D+ M+ + G+ ++L VHDE++ E P Sbjct: 695 ---LERAAINTP------VQGSAADVAMCAMLEIDRNSRLRELGWKLILQVHDEVILEGP 745 Query: 638 DTDEFNASML-YHLMTSNPSWA--KGLPLKAEGYESKRY 673 A + M+ + L + +K + Sbjct: 746 SESVEEAQEIVVKCMSFPFEGENFLKVNLDVDADHAKSW 784 Score = 95.6 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 83/302 (27%), Gaps = 58/302 (19%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFA------FGFDDHPVELW-DCVHDPV-MPQV 56 D E + ID+ K + F+ F +W D ++ + V Sbjct: 29 ACDTE-VADIDVKKESP---VGHGKLTCFSIYCGVNVDFGGGKSRVWVDLLNGGPGILDV 84 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-----LPSALKA 111 + EN ++ + HN F++ +L + + T+ LAR L +L+A Sbjct: 85 FRPYFENAEIKKIWHNYSFDKHILGNY-GIK-AAGFYADTMHLARLWDSARGGLGYSLEA 142 Query: 112 VGEALKLSSQ-----KMEEGKELIARFCKGETHECLYDRNKPNHREA------WRLFGEY 160 + K+ K+L A + + P E + Y Sbjct: 143 LTADPKVMDDRPLQNGKTSMKDLFAITNVKKDGSEGKLKVIPPVEELQTSKDTRDKWIYY 202 Query: 161 CKGDVTVTREIFKRLEPLS-------------------SKEQELW-YLDQTINDRGYCVD 200 D T ++ L+ + + + G VD Sbjct: 203 SAHDSVCTWHLWSSLKKKLLKASWYMEGDKRGNMYQFYELYWRHFGDVLVRMEAEGMRVD 262 Query: 201 VALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 + ++ ++ + + + +++ LF G Sbjct: 263 TVHLAEVEKVALNQKQLSVSRFQKWASQYCPDAMYMNVCSDVQIRQILF---GGTSNKKD 319 Query: 256 ET 257 + Sbjct: 320 PS 321 >gi|300741418|ref|ZP_07071439.1| DNA polymerase I [Rothia dentocariosa M567] gi|300380603|gb|EFJ77165.1| DNA polymerase I [Rothia dentocariosa M567] Length = 955 Score = 184 bits (468), Expect = 3e-44, Method: Composition-based stats. Identities = 96/707 (13%), Positives = 193/707 (27%), Gaps = 177/707 (25%) Query: 17 TKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYF 75 TK I E+ + + + + E + + + + + Sbjct: 371 TKTKIRAAEENPVLRGI-ILTSKESSLWINLTNISEDLASAFAEWVSDPQMRKIVMDLKN 429 Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGL----PSAL-----KAVGE-ALKLSSQKMEE 125 +R L + + + + G L + + E L + Q+ E Sbjct: 430 QRK-LLREYGYKLD-GAIEDPSLSSYMCGYIAAANRRLFAERIEDLAEKYLWIPQQEFSE 487 Query: 126 --------------GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 G+E + F + R + Y D+ + + Sbjct: 488 LVFPEEALSLFEMPGEENLRYFTQVSRVIHELARILHFEMQEQGQLKIY--EDIELPL-L 544 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + + + G V AL + LN + +++ + L G V+ Sbjct: 545 Y---------------VLADMEQAGIAVSDALLNELNDTFSSRASMAEEQAKVLIGGDVN 589 Query: 232 ----SSRCLEKLKTWLFLETGLHLEDLTET-------TCQRVLSSNKKLTPQAIQV--FN 278 + +++L+T LF GL ++ + +L+ + A + Sbjct: 590 GEPLNLASVKQLQTVLFERLGLPKTRKIKSGYSTDSESVADLLTKVSPESDGAQFLIALQ 649 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + + L +A +DGR+ T Q A+ TGR S QN+P + Sbjct: 650 AYRDNIKLKQT-VEGLQKAAVTDGRVHTTFQQN-AASTGRLSSTAPNLQNIPIRTDEGRR 707 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-------KKLVVADLAGIEARVLAW 391 +R I + + L+ AD + IE R++ Sbjct: 708 -------------------------IRGAFIVAPKVLDGVEYEGLLTADYSQIEMRIMVH 742 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +A ++ ++A+ GEDL+ + F VAP +VT RA K M L Y + Sbjct: 743 LAADEKLIQAYADGEDLHRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLAYG-----LSRF 797 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 LN+++ + + + F R + + + G R Sbjct: 798 GLAKQLNISSDEAGELRTNYFKRFGRVGRFLRGVVKQAHNDGYTETIYGR---------R 848 Query: 512 QKHSRV----SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + +A G A K + + R Sbjct: 849 RSLPDLDSPNRTRREAAERAALNAPIQGTAADIIKIAMINIH----------------RR 892 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 L + ++ Sbjct: 893 LQEEKLKT------------------------------------RMLLQVHDE------- 909 Query: 628 VHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673 I+ E + A + M+ +PL + K + Sbjct: 910 ----IILEVAVGEREAAQRILVEEMSEAIE--LKVPLDVQVGWGKSW 950 >gi|222616936|gb|EEE53068.1| hypothetical protein OsJ_35810 [Oryza sativa Japonica Group] Length = 2044 Score = 184 bits (468), Expect = 4e-44, Method: Composition-based stats. Identities = 86/734 (11%), Positives = 173/734 (23%), Gaps = 217/734 (29%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ------- 55 D + ++ A +++ PV + D +M Sbjct: 1407 EFSFDLH-YVKKSIKSSSTY-----FDILGLAVCWENSPVYYCNFPKDLMMAGSNDSIEM 1460 Query: 56 ---------VLKEALENTDVTIVAHNSYFERTVLKA-----------CFNLDI-PIHRWI 94 + E + V + N F+ LK + + + Sbjct: 1461 WDELTRRWNRVIEIMRQNSVKKMTWNLKFQIQALKYPCVSCQRLSRLHLDYKMLKNVEVL 1520 Query: 95 CTLVLARS----NGLPSALK--AVGEALKLSSQKME--EGKELIARFCKGETHECLYDRN 146 L + S L V L + ++L+ R E R+ Sbjct: 1521 DNL---YVFLQPVSVHSGLDICLVAWVLWPDEESKTVPNLEKLVKRRLHNEAAAAAN-RD 1576 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRG 196 + + C TR + L L + L + + G Sbjct: 1577 GRWRNQMHKAAHNGCCRRAAQTRALCSVLRKLLVSQNLNDLLETIEGPLVNVLADMELWG 1636 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--- 253 D+ I+ + +L++E L S + L+ L + Sbjct: 1637 IGADMDACLRARHIIIRKLKELEKEAYKLAG-KSFSLNATADIADVLYTHLKLPVPKGCG 1695 Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK--LNTLVEAMNSDGRLRGTL 308 + +T ++ L + P + +R A + + + + R Sbjct: 1696 KGKLHPSTDKQSLDHLRDQHPIISVIKEHRTLAKLLNGTLGSICSRAQLCSKSQRYIIQG 1755 Query: 309 QF-LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 + ++ TGR S Q Sbjct: 1756 NWLQTSTATGRLSMEEPNLQ---------------------------------------- 1775 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA-FETGEDLYVTTYARSFNVAPAQVTK 426 E LV AD + IE R++A + + ++ + D++ +R A + + Sbjct: 1776 ----ENWLLVTADYSQIELRLMAHFSKDTALIELLSKPDGDVFTMIASRWTGKAESLICS 1831 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 +R K + Sbjct: 1832 KERETTKRFIYGIL--------------------------------------------YG 1847 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 A + + +++++ VS LH+A G Sbjct: 1848 MGANSLAEQLECSPEDAAQKIQSFKRFFPGVSSW---LHEAVASCRHKGYVETL------ 1898 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 GR + S + R+ +I Q + Sbjct: 1899 -----------------MGRRRFLSKITAGNSKEK---AKAQRQA------VNSICQGSA 1932 Query: 607 RDILAEGMMNAT--------------------------KAGYDIVLTVHDEIVCETPDTD 640 DI+ M+ + ++L VHDE+V E Sbjct: 1933 ADIIKVAMIKVHSAITNGSTVGATVDSIDVAMQNFSEIRGRCHLILQVHDELVLEVDPCM 1992 Query: 641 E-FNASMLYHLMTS 653 +L +M + Sbjct: 1993 VAEAVRLLQTVMEN 2006 >gi|108862506|gb|ABA97168.2| DNA polymerase I family protein, expressed [Oryza sativa Japonica Group] Length = 2065 Score = 184 bits (468), Expect = 4e-44, Method: Composition-based stats. Identities = 86/734 (11%), Positives = 173/734 (23%), Gaps = 217/734 (29%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ------- 55 D + ++ A +++ PV + D +M Sbjct: 1428 EFSFDLH-YVKKSIKSSSTY-----FDILGLAVCWENSPVYYCNFPKDLMMAGSNDSIEM 1481 Query: 56 ---------VLKEALENTDVTIVAHNSYFERTVLKA-----------CFNLDI-PIHRWI 94 + E + V + N F+ LK + + + Sbjct: 1482 WDELTRRWNRVIEIMRQNSVKKMTWNLKFQIQALKYPCVSCQRLSRLHLDYKMLKNVEVL 1541 Query: 95 CTLVLARS----NGLPSALK--AVGEALKLSSQKME--EGKELIARFCKGETHECLYDRN 146 L + S L V L + ++L+ R E R+ Sbjct: 1542 DNL---YVFLQPVSVHSGLDICLVAWVLWPDEESKTVPNLEKLVKRRLHNEAAAAAN-RD 1597 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRG 196 + + C TR + L L + L + + G Sbjct: 1598 GRWRNQMHKAAHNGCCRRAAQTRALCSVLRKLLVSQNLNDLLETIEGPLVNVLADMELWG 1657 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--- 253 D+ I+ + +L++E L S + L+ L + Sbjct: 1658 IGADMDACLRARHIIIRKLKELEKEAYKLAG-KSFSLNATADIADVLYTHLKLPVPKGCG 1716 Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK--LNTLVEAMNSDGRLRGTL 308 + +T ++ L + P + +R A + + + + R Sbjct: 1717 KGKLHPSTDKQSLDHLRDQHPIISVIKEHRTLAKLLNGTLGSICSRAQLCSKSQRYIIQG 1776 Query: 309 QF-LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 + ++ TGR S Q Sbjct: 1777 NWLQTSTATGRLSMEEPNLQ---------------------------------------- 1796 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA-FETGEDLYVTTYARSFNVAPAQVTK 426 E LV AD + IE R++A + + ++ + D++ +R A + + Sbjct: 1797 ----ENWLLVTADYSQIELRLMAHFSKDTALIELLSKPDGDVFTMIASRWTGKAESLICS 1852 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 +R K + Sbjct: 1853 KERETTKRFIYGIL--------------------------------------------YG 1868 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 A + + +++++ VS LH+A G Sbjct: 1869 MGANSLAEQLECSPEDAAQKIQSFKRFFPGVSSW---LHEAVASCRHKGYVETL------ 1919 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 GR + S + R+ +I Q + Sbjct: 1920 -----------------MGRRRFLSKITAGNSKEK---AKAQRQA------VNSICQGSA 1953 Query: 607 RDILAEGMMNAT--------------------------KAGYDIVLTVHDEIVCETPDTD 640 DI+ M+ + ++L VHDE+V E Sbjct: 1954 ADIIKVAMIKVHSAITNGSTVGATVDSIDVAMQNFSEIRGRCHLILQVHDELVLEVDPCM 2013 Query: 641 E-FNASMLYHLMTS 653 +L +M + Sbjct: 2014 VAEAVRLLQTVMEN 2027 >gi|118083459|ref|XP_416549.2| PREDICTED: similar to DNA polymerase theta [Gallus gallus] Length = 2620 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 103/745 (13%), Positives = 202/745 (27%), Gaps = 142/745 (19%) Query: 23 KYAEDVCVILFAFGFDDHPVELW------------------DCVHDPVMPQVLKEA---L 61 ++ ED V+ A + + + + L+ L Sbjct: 1918 QHCEDTLVVGLAVCWGGKDAYYISLQQMQDQTEICPSLAPPPLDKNLSVTERLRHLQLYL 1977 Query: 62 -ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 E + ++V +N L + + + V S + + Sbjct: 1978 QEKQERSLVMYNFIQHYKTLVMACGISLE-GSFEDPKVACWLLDSGSK---ECTLHNMVT 2033 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS- 179 + L+ G+ + L + +H +R E + ++ L + Sbjct: 2034 NFLPNELPLLEGVGTGQGVQSLGLSSSEDHSGRYRAAIE-SVLIFNIMNQLHSELRKENL 2092 Query: 180 -----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E Y + G A T Q++ + T+++ + L S Sbjct: 2093 TDVFSKVEMPNHYCLALLELNGIGFSTAAYETQKQVMQAKLTEIETKAYQLAGHS-FSLT 2151 Query: 235 CLEKLKTWLFLETGLH---------------------------LEDLTETTCQRVLSSNK 267 + + LFLE L +T + VL K Sbjct: 2152 SPDDVAEVLFLELKLPQNGDVKVQGNKKTLGYTRRTSIKGNRVRLSKQFSTTKDVLEKLK 2211 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD---GRLRGTLQFLGASRTGRWSGCVF 324 L P + R + + + L + G R + TGR S Sbjct: 2212 PLHPLPGLILEWRR-INSAISKVVFPLQREKRFNSALGMERIYPVSQTHTATGRVSFAEP 2270 Query: 325 PPQNLPR--------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358 QN+PR S + E H + Sbjct: 2271 NIQNVPRDFEIEMPIVVEESPPFRTHVYSCAVSRSLLNFERGLGRKHSSVLPSGVNTWTA 2330 Query: 359 IISDC--------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 ++ +R + G ++ AD +E R+LA + + ++AF G D++ Sbjct: 2331 DRTERRGIPFFVSMRHAFVPFPGGFILAADYCQLELRILAHFSRDCRLIEAFNKGADVFK 2390 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 + A + V R K + + Y GAK+ + + ++ S Sbjct: 2391 SIAAEWKMIDSEAVGDSTRQQAKQICYGIIYGIGAKSLGE-----QMGIDDNKAANYIES 2445 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + + F + N +G R A R + + A Q Sbjct: 2446 FKSRYTGIQKFLKETVSNCRRDGFVQTILGR--RRYLPAIRDSNPYIKA------HAERQ 2497 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + A V +++ L + S L + R +R+ RE Sbjct: 2498 AVNTTVQGSAADIVKTATVNIQRRLEALSSVNKSHGHL---ENSFQRDKTGRLSRKRNRE 2554 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH- 649 M++ G+ I L +HDE++ E + D + + Sbjct: 2555 -----------------------MLHPISGGFFI-LQLHDELLYEVAEDDVIQVAQIVKH 2590 Query: 650 LMTSNPSWAKGLPLKAEGYESKRYR 674 M + + L + + Sbjct: 2591 EMENAVK--LSVKLNVKVKIGPSWG 2613 >gi|114588750|ref|XP_001165287.1| PREDICTED: DNA polymerase theta isoform 4 [Pan troglodytes] Length = 2499 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 96/777 (12%), Positives = 191/777 (24%), Gaps = 215/777 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74 +D+ V+ A + + + +P L +L D + Sbjct: 1804 CDDILVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1863 Query: 75 ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117 ++ +L + + + V S L ++ + Sbjct: 1864 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 1922 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + EG E + + L + + + Sbjct: 1923 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 1981 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E Y + G A + I+ + ++ + L S + Sbjct: 1982 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 2040 Query: 238 KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270 + LFLE L ++ + +T + VL+ K L Sbjct: 2041 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 2100 Query: 271 PQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 P + R + A+ K+ + R+ Q A+ GR + Sbjct: 2101 PLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRITFIEP 2156 Query: 325 PPQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPL 357 QN+PR + + D Sbjct: 2157 NIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRG 2216 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 S +R + G ++ AD + +E R+LA ++ ++ ++ TG D++ + A Sbjct: 2217 MPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWK 2276 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 + P V D R K + + Y GAK+ + + + +S + Sbjct: 2277 MIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTG 2331 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 F +N +G R+ + + Sbjct: 2332 INQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------ 2364 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 + YR R +NT Sbjct: 2365 -----------------------------NNPYRKAHAERQAINT--------------- 2380 Query: 598 TENIVQAVSRDILAEGMMNATK-------------------------------------- 619 IVQ + DI+ +N K Sbjct: 2381 ---IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCP 2437 Query: 620 -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M S + LK + + Sbjct: 2438 IRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2492 >gi|114588754|ref|XP_001165216.1| PREDICTED: DNA polymerase theta isoform 3 [Pan troglodytes] Length = 2500 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 96/777 (12%), Positives = 191/777 (24%), Gaps = 215/777 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74 +D+ V+ A + + + +P L +L D + Sbjct: 1805 CDDILVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1864 Query: 75 ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117 ++ +L + + + V S L ++ + Sbjct: 1865 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 1923 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + EG E + + L + + + Sbjct: 1924 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 1982 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E Y + G A + I+ + ++ + L S + Sbjct: 1983 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 2041 Query: 238 KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270 + LFLE L ++ + +T + VL+ K L Sbjct: 2042 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 2101 Query: 271 PQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 P + R + A+ K+ + R+ Q A+ GR + Sbjct: 2102 PLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRITFIEP 2157 Query: 325 PPQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPL 357 QN+PR + + D Sbjct: 2158 NIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRG 2217 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 S +R + G ++ AD + +E R+LA ++ ++ ++ TG D++ + A Sbjct: 2218 MPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWK 2277 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 + P V D R K + + Y GAK+ + + + +S + Sbjct: 2278 MIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTG 2332 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 F +N +G R+ + + Sbjct: 2333 INQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------ 2365 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 + YR R +NT Sbjct: 2366 -----------------------------NNPYRKAHAERQAINT--------------- 2381 Query: 598 TENIVQAVSRDILAEGMMNATK-------------------------------------- 619 IVQ + DI+ +N K Sbjct: 2382 ---IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCP 2438 Query: 620 -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M S + LK + + Sbjct: 2439 IRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2493 >gi|114588756|ref|XP_001165181.1| PREDICTED: DNA polymerase theta isoform 2 [Pan troglodytes] Length = 1762 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 96/777 (12%), Positives = 191/777 (24%), Gaps = 215/777 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74 +D+ V+ A + + + +P L +L D + Sbjct: 1067 CDDILVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1126 Query: 75 ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117 ++ +L + + + V S L ++ + Sbjct: 1127 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 1185 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + EG E + + L + + + Sbjct: 1186 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 1244 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E Y + G A + I+ + ++ + L S + Sbjct: 1245 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 1303 Query: 238 KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270 + LFLE L ++ + +T + VL+ K L Sbjct: 1304 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 1363 Query: 271 PQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 P + R + A+ K+ + R+ Q A+ GR + Sbjct: 1364 PLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRITFIEP 1419 Query: 325 PPQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPL 357 QN+PR + + D Sbjct: 1420 NIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRG 1479 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 S +R + G ++ AD + +E R+LA ++ ++ ++ TG D++ + A Sbjct: 1480 MPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWK 1539 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 + P V D R K + + Y GAK+ + + + +S + Sbjct: 1540 MIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTG 1594 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 F +N +G R+ + + Sbjct: 1595 INQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------ 1627 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 + YR R +NT Sbjct: 1628 -----------------------------NNPYRKAHAERQAINT--------------- 1643 Query: 598 TENIVQAVSRDILAEGMMNATK-------------------------------------- 619 IVQ + DI+ +N K Sbjct: 1644 ---IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCP 1700 Query: 620 -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M S + LK + + Sbjct: 1701 IRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 1755 >gi|114588748|ref|XP_516680.2| PREDICTED: DNA polymerase theta isoform 5 [Pan troglodytes] gi|332817593|ref|XP_001165150.2| PREDICTED: DNA polymerase theta isoform 1 [Pan troglodytes] Length = 2596 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 96/777 (12%), Positives = 191/777 (24%), Gaps = 215/777 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74 +D+ V+ A + + + +P L +L D + Sbjct: 1901 CDDILVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1960 Query: 75 ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117 ++ +L + + + V S L ++ + Sbjct: 1961 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 2019 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + EG E + + L + + + Sbjct: 2020 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 2078 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E Y + G A + I+ + ++ + L S + Sbjct: 2079 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 2137 Query: 238 KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270 + LFLE L ++ + +T + VL+ K L Sbjct: 2138 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 2197 Query: 271 PQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 P + R + A+ K+ + R+ Q A+ GR + Sbjct: 2198 PLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRITFIEP 2253 Query: 325 PPQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPL 357 QN+PR + + D Sbjct: 2254 NIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRG 2313 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 S +R + G ++ AD + +E R+LA ++ ++ ++ TG D++ + A Sbjct: 2314 MPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWK 2373 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 + P V D R K + + Y GAK+ + + + +S + Sbjct: 2374 MIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTG 2428 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 F +N +G R+ + + Sbjct: 2429 INQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------ 2461 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 + YR R +NT Sbjct: 2462 -----------------------------NNPYRKAHAERQAINT--------------- 2477 Query: 598 TENIVQAVSRDILAEGMMNATK-------------------------------------- 619 IVQ + DI+ +N K Sbjct: 2478 ---IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCP 2534 Query: 620 -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M S + LK + + Sbjct: 2535 IRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2589 >gi|126015344|gb|ABN70703.1| DNA polymerase 4 [Salmonella phage SETP7] gi|126015346|gb|ABN70704.1| DNA polymerase 4 [Salmonella phage SETP11] Length = 237 Score = 184 bits (466), Expect = 5e-44, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 123/237 (51%), Gaps = 13/237 (5%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L++D ET S DL K G YAE +++ + FD+ PV++WD MP+ L+ Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 A+ ++++ +V N F+R V+K C+ ++ + I T+++A + LP +L A+ Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120 Query: 113 GEALKLS--SQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169 E L + K + GK LI RF K R H + W F Y K D+T R Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180 Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E++K++ S E + +LDQ INDRG+ VDVALA + + V + +L +E + Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAESAIEAVTRHKEELQEEAQR 237 >gi|126015348|gb|ABN70705.1| DNA polymerase 4 [Salmonella phage SETP13] Length = 237 Score = 184 bits (466), Expect = 6e-44, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 13/237 (5%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L++D ET S DL K G YAE +++ + FD+ PV++WD MP+ L+ Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 A+ ++++ +V N F+R V+K C+ ++ + I T+++A + LP +L A+ Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120 Query: 113 GEALKLS--SQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169 E L + K + GK LI RF K R H + W F Y K D+T R Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180 Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E++K++ S E + +LDQ INDRG+ VDVALA + V + +L +E + Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQR 237 >gi|291400573|ref|XP_002716687.1| PREDICTED: DNA polymerase theta isoform 2 [Oryctolagus cuniculus] Length = 2306 Score = 183 bits (465), Expect = 7e-44, Method: Composition-based stats. Identities = 99/782 (12%), Positives = 195/782 (24%), Gaps = 225/782 (28%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHN---- 72 +D+ V+ A + + +P L L D + Sbjct: 1611 CDDILVVGLAVCWGGRDAYYCSLQKEQQHSEISASLVPPSLDPRLTMKDRMWHLQSCLQK 1670 Query: 73 --------SYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGE--- 114 ++ +L + + + V S L ++ Sbjct: 1671 ASDKERSVIIYDFIRSYKILLLSCGVSLE-QSFEDPKVACWLLDPDSKEPTLHSIVTSFL 1729 Query: 115 --ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 L L + ME G+ + + R + + + Sbjct: 1730 PCELPLLEE-METGQGIQSLGLNVSMEHSGRYRASVESILIFNSMNQLNAL-----LQKE 1783 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 K + E Y + G A + + I+ + ++ + L S Sbjct: 1784 KLQDIFHKVEMPSQYCLALLELNGIGFSTAESESQKHIMQAKLDAIETQAYQLAGHS-FS 1842 Query: 233 SRCLEKLKTWLFLETGLHLE--------DLT--------------E-----TTCQRVLSS 265 + + LFLE L T + +T + VL+ Sbjct: 1843 FTSSDDIAEVLFLELKLPPNGEMKSQGCKKTLGSTRRGNDKGCKLKLGRQLSTSKDVLNK 1902 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRW 319 K L P + R + A+ K+ + R+ Q A+ GR Sbjct: 1903 LKALHPLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRI 1958 Query: 320 SGCVFPPQNLPR---------------------------PSRSHEELDQIITHLPTSITS 352 + QN+PR ++ Sbjct: 1959 TFIEPNIQNVPRDFEIKMPTLVGESPPPLVQGKGLLPKSRGPDEKDCTLNPKPWAQMEER 2018 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 D S +R + G ++ AD + +E R+LA ++ ++ ++ TGED++ + Sbjct: 2019 ASDRGIPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGEDVFRSI 2078 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 A + P V D R K + + Y GAK+ + + + +S Sbjct: 2079 AAEWRMMEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFK 2133 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 + +F + +N +G R+ + + Sbjct: 2134 SRYTGINHFMKETVKNCRRDGFVQTILGR---------RRYLPGIKD------------- 2171 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 + Y R +NTT Sbjct: 2172 ----------------------------------NNPYHKAHAERQAINTT--------- 2188 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATK--------------------------------- 619 VQ + DI+ +N K Sbjct: 2189 ---------VQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGVLQSDKTGLFPKRRLP 2239 Query: 620 ------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKR 672 G +L +HDE++ E + D + + M + + LK + Sbjct: 2240 GVFCPVRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMENAIK--LSVKLKVKVKIGAS 2297 Query: 673 YR 674 + Sbjct: 2298 WG 2299 >gi|291400571|ref|XP_002716686.1| PREDICTED: DNA polymerase theta isoform 1 [Oryctolagus cuniculus] Length = 2585 Score = 183 bits (465), Expect = 7e-44, Method: Composition-based stats. Identities = 99/782 (12%), Positives = 195/782 (24%), Gaps = 225/782 (28%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHN---- 72 +D+ V+ A + + +P L L D + Sbjct: 1890 CDDILVVGLAVCWGGRDAYYCSLQKEQQHSEISASLVPPSLDPRLTMKDRMWHLQSCLQK 1949 Query: 73 --------SYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGE--- 114 ++ +L + + + V S L ++ Sbjct: 1950 ASDKERSVIIYDFIRSYKILLLSCGVSLE-QSFEDPKVACWLLDPDSKEPTLHSIVTSFL 2008 Query: 115 --ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 L L + ME G+ + + R + + + Sbjct: 2009 PCELPLLEE-METGQGIQSLGLNVSMEHSGRYRASVESILIFNSMNQLNAL-----LQKE 2062 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 K + E Y + G A + + I+ + ++ + L S Sbjct: 2063 KLQDIFHKVEMPSQYCLALLELNGIGFSTAESESQKHIMQAKLDAIETQAYQLAGHS-FS 2121 Query: 233 SRCLEKLKTWLFLETGLHLE--------DLT--------------E-----TTCQRVLSS 265 + + LFLE L T + +T + VL+ Sbjct: 2122 FTSSDDIAEVLFLELKLPPNGEMKSQGCKKTLGSTRRGNDKGCKLKLGRQLSTSKDVLNK 2181 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRW 319 K L P + R + A+ K+ + R+ Q A+ GR Sbjct: 2182 LKALHPLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRI 2237 Query: 320 SGCVFPPQNLPR---------------------------PSRSHEELDQIITHLPTSITS 352 + QN+PR ++ Sbjct: 2238 TFIEPNIQNVPRDFEIKMPTLVGESPPPLVQGKGLLPKSRGPDEKDCTLNPKPWAQMEER 2297 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 D S +R + G ++ AD + +E R+LA ++ ++ ++ TGED++ + Sbjct: 2298 ASDRGIPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGEDVFRSI 2357 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 A + P V D R K + + Y GAK+ + + + +S Sbjct: 2358 AAEWRMMEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFK 2412 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 + +F + +N +G R+ + + Sbjct: 2413 SRYTGINHFMKETVKNCRRDGFVQTILGR---------RRYLPGIKD------------- 2450 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 + Y R +NTT Sbjct: 2451 ----------------------------------NNPYHKAHAERQAINTT--------- 2467 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATK--------------------------------- 619 VQ + DI+ +N K Sbjct: 2468 ---------VQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGVLQSDKTGLFPKRRLP 2518 Query: 620 ------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKR 672 G +L +HDE++ E + D + + M + + LK + Sbjct: 2519 GVFCPVRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMENAIK--LSVKLKVKVKIGAS 2576 Query: 673 YR 674 + Sbjct: 2577 WG 2578 >gi|326677806|ref|XP_694437.5| PREDICTED: DNA polymerase theta [Danio rerio] Length = 2593 Score = 183 bits (465), Expect = 8e-44, Method: Composition-based stats. Identities = 95/743 (12%), Positives = 201/743 (27%), Gaps = 163/743 (21%) Query: 26 EDVCVILFAFGFDDHPVELW------------------DCVHDPVMPQVLKEA---LE-N 63 ED+ VI + + + + LK+ L+ + Sbjct: 1913 EDLVVIGISVSWGAKDAYFVSLQQELVDTDISASLAPPPLDDTLTVEERLKQIQSCLQKD 1972 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPI---HRWICTLVLARSNGLPSALKAVGEALKLSS 120 + VT+ ++ L L + + + S + + Sbjct: 1973 SSVTVT-----YDFIHLYKILLLACELAVRGTFEDPKIACWLLDSSSKERTL-------- 2019 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 M ++ + EA + + + + +L L Sbjct: 2020 HNMVTSFATEDLPMLEGISAGQGVQSLGIYGEASQPGRYRAAIESVLVFRVMTQLNCLLE 2079 Query: 181 KE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 K+ Y + G +A ++ + + L+ + L Sbjct: 2080 KDGFLDVFKKVEMPTQYCLALLELNGIGFSIAECEAQKHVMQAKLSALESQAYQLAGHS- 2138 Query: 231 SSSRCLEKLKTWLFLETGLHLE------------------------DLTETTCQRVLSSN 266 S E + LFLE L +T + VL Sbjct: 2139 FSLTSPEDVAEVLFLELKLPPNGDLNGLKNKKTLGYTRRAGARIKLSKQFSTTKDVLEKL 2198 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKL-------NTLVEAMNSDGRLRGTLQFLGASRTGRW 319 K L P + R + K+ + D R+ Q A+ GR Sbjct: 2199 KPLHPLPGVILEWRRITNAL--TKVVFPLQREKKWHSHLKMD-RIHPISQSHTAT--GRV 2253 Query: 320 SGCVFPPQNLPRP---------------------------SRSHEELDQIITHLPTSITS 352 S QN+P+ S ++++++ L Sbjct: 2254 SFTEPNIQNVPKDFEIQMPTLIEESQTSQNGGSKMWYISASCKRTKINRLLAPLLKVSDK 2313 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 PD S +R + G ++ D + +E R+LA ++ ++ L +G D++ + Sbjct: 2314 SPDKGMQFSVSMRHAFVPFSGGLILAVDYSQLELRILAHLSRDRRLLHVLNSGADVFKSI 2373 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 A V PA V + R K + + Y GAK+ + + + + Sbjct: 2374 AAEWKMVDPASVDDNMRQQAKQICYGIIYGMGAKSLGE-----QMGIEENDAACYIETFK 2428 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 + +NF R + ++ +G +R + + + A Q + Sbjct: 2429 SRYNGIQNFLRETVQKCGKNGYVKTLLGR--KRFLPGIKDSNVYIKS------HAERQAV 2480 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 A + + +++ +P+ S + + + N Sbjct: 2481 NTTVQGSAADIVKLATINIQRRIEEAFPGVPT--SHQHPSIRLGGRHRNQFRPL------ 2532 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLM 651 G +L +HDE++ E + D + + M Sbjct: 2533 ---------------------------RGGYFILQLHDELIYEVAEEDVIQVAQIVKREM 2565 Query: 652 TSNPSWAKGLPLKAEGYESKRYR 674 S + L+ + + Sbjct: 2566 ESVVKLY--VKLRVKVKVGPSWG 2586 >gi|157786800|ref|NP_001099348.1| DNA polymerase theta [Rattus norvegicus] gi|149060535|gb|EDM11249.1| polymerase (DNA directed), theta (predicted), isoform CRA_a [Rattus norvegicus] Length = 2547 Score = 183 bits (464), Expect = 9e-44, Method: Composition-based stats. Identities = 96/774 (12%), Positives = 198/774 (25%), Gaps = 221/774 (28%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQ--------------VLKEALE----------NTD 65 V+ A + + + +KE +E + + Sbjct: 1859 VVGLAVCWGGKDAYYLSLQKEQKQSEMSPSLAPPPLDATLTVKERMEYLQSCLQKKSDQE 1918 Query: 66 VTIVAHNSYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKL 118 ++V ++ VL + + + V S L ++ + Sbjct: 1919 RSVVT----YDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSIVTSFLP 1973 Query: 119 SSQKMEEGKEL---IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + EG E I + + + Sbjct: 1974 HELALLEGIETGPGIQSLGLNVNTDHSGRYRASVESVLIFNSMNQ----LNSMLQKENLH 2029 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + E Y + G A T I+ + ++ + L S Sbjct: 2030 DIFCKVEMPSQYCLALLELNGIGFSTAECETQKHIMQAKLDAIETQAYQLAGHS-FSFTS 2088 Query: 236 LEKLKTWLFLETGLHL--------EDLT------------E-------TTCQRVLSSNKK 268 + + LFLE L T + +T + +L+ K Sbjct: 2089 ADDIAQVLFLELKLPPNGEMKTQGGRKTLGSTRRGTESDRKLRLGRRFSTSKDILNKLKD 2148 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCVFP 325 L P + R S + + L + + LR + + + TGR + Sbjct: 2149 LHPLPGLILEWRR-ISNAITKVVFPLQREKHLNPFLRMERIYPVSQSHTATGRITFTEPN 2207 Query: 326 PQNLPRP-------------------------SRSHEELDQIITHLPTSITSDPDPLQII 360 QN+PR +R ++++ + T + D Sbjct: 2208 IQNVPRDFEIKMPTLVRESPPSQASGKGQLAMARQNQKVYGLHPGQRTVLEKTSDRGVPF 2267 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 S +R + G ++ AD + +E R+LA ++ + ++ +G D++ + A + Sbjct: 2268 SVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNSGADVFRSIAAEWKMIE 2327 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 P V + R K + + Y GAK+ + + + +S ++ + Sbjct: 2328 PDAVGDNLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYKGINH 2382 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 F R +N + +G R+ + + Sbjct: 2383 FMRDTVKNCRRDGFVETILGR---------RRYLPGIKD--------------------- 2412 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 + Y R +NTT Sbjct: 2413 --------------------------NNPYHKAHAERQAINTT----------------- 2429 Query: 601 IVQAVSRDILAEGMMNATK---------------------------------------AG 621 VQ + DI+ +N K G Sbjct: 2430 -VQGSAADIVKVATVNIQKQLETFHPTFKSHGHRESMLQSDRAGLLPKRKVKGMFCPMRG 2488 Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 +L +HDE++ E + D + + M + LK + + Sbjct: 2489 GFFILQLHDELLYEVAEEDVVQVAQIVKNEMECAIK--LSVKLKVKVKIGASWG 2540 >gi|194222793|ref|XP_001502374.2| PREDICTED: similar to polymerase (DNA directed), theta [Equus caballus] Length = 2701 Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats. Identities = 100/793 (12%), Positives = 196/793 (24%), Gaps = 223/793 (28%) Query: 13 PIDLTKCG-ICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALEN 63 + + G K +D+ V+ A + + + +P L L Sbjct: 1994 DPPIREDGFPVKGCDDILVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPRLTM 2053 Query: 64 TDVTIV----AHNSY----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGL 105 D ++ +L + + + V Sbjct: 2054 KDRMWHLRSCFQ--KESDKERSVIVYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDP 2110 Query: 106 PSA---LKAVGEALKLSSQKMEEGKEL---IARFCKGETHECLYDRNKPNHREAWRLFGE 159 S L ++ + + EG E I E Sbjct: 2111 DSKEPTLHSIVTSFLPHELPLLEGIETGQGIQSLGLNVDTEHSGRYRASVESILIFNSMN 2170 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + + E Y + G A + I+ + ++ Sbjct: 2171 Q----LNSLLKKENLQDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIE 2226 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHL--------EDLT---------------- 255 + L S + + LFLE L T Sbjct: 2227 TQAYQLAGHS-FSFTSSDDIAEVLFLELKLPPNGEMKNQGGKKTLGSTRRGNDNGRKLRL 2285 Query: 256 -E--TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGT 307 + +T + +L+ K L P + R + + + L A + R+ Sbjct: 2286 GKQFSTSKDILNKLKALHPLPGLILEWRRITN-AITKVVFPLQRAKRLNPFLGMERIYPV 2344 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSR--------------------------SHEELDQ 341 Q A+ GR + QN+PR + + Sbjct: 2345 SQSHTAT--GRITFTEPNIQNVPRDFEIKMPTLVGESPPSQALGKGLLPMGRGNEKSHGL 2402 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + H + D S +R + G ++ AD + +E R+LA ++ ++ ++ Sbjct: 2403 NLGHQAQTEERASDRGMPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQV 2462 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 TG D++ + A + P V D R K + + Y GAK+ + + + Sbjct: 2463 LNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGILYGMGAKSLGE-----QMGIKE 2517 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 +S ++ +F R +N +G R+ + + Sbjct: 2518 NDAACYIDSFKSKYTGINHFMRETVKNCKRDGFVQTILGR---------RRYLPGIKD-- 2566 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + Y R +N Sbjct: 2567 ---------------------------------------------NNPYHKAHAERQAIN 2581 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---------------------- 619 TT VQ + DI+ +N K Sbjct: 2582 TT------------------VQGSAADIVKIATVNIQKQLETFHSSFKSHGHREGMLQSD 2623 Query: 620 -----------------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGL 661 G +L +HDE++ E + D + + M S + Sbjct: 2624 RTGLLPKRKLQGMFSPIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAIK--LSV 2681 Query: 662 PLKAEGYESKRYR 674 LK + + Sbjct: 2682 KLKVKVKIGASWG 2694 >gi|283458187|ref|YP_003362804.1| DNA polymerase I [Rothia mucilaginosa DY-18] gi|283134219|dbj|BAI64984.1| DNA polymerase I [Rothia mucilaginosa DY-18] Length = 1003 Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats. Identities = 105/709 (14%), Positives = 194/709 (27%), Gaps = 167/709 (23%) Query: 17 TKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQVLKEALENTDVTIVAHNSYF 75 TK I E+ ++ D DP + L L + + Sbjct: 407 TKTKIRAAEENPELLGVLL-TSKSTSLWIDTRTIDPELDAALAAWLSDEAARKIV----M 461 Query: 76 ERTV---LKACFNLDIPIHRWICTLVLARSNGL---------PSALKAVGEALK------ 117 + V L + ++ + + G ++ + E Sbjct: 462 DLKVQRKLLRAYGYELA-GAVEDPALSSYMCGFIPTATRKLFSERMEDLAERYLWIPKEP 520 Query: 118 -----LSSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREI 171 ++ E L + + E + L Y E Sbjct: 521 YAQLVFQPEEDEAEPSLFSLPGEAEPVDNLRYFTQISRIIHELARLLHY-------EMEE 573 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV- 230 +L+ E L Y+ + G V AL L+ + + ++ G V Sbjct: 574 HGQLKVYEEIELPLLYVLADMEQAGIAVSDALLTELHDTFSARANQAQESARAIIGGEVA 633 Query: 231 -------SSSRCLEKLKTWLFLETGLHLEDLTET---TCQR-VLSSNKKLTPQ------A 273 + +++L+T LF GL ++ T V K++P+ Sbjct: 634 TEDGEEPLNLASVKQLQTVLFETLGLPHTRKIKSGYSTDAESVTELLSKISPESDGAAFL 693 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + R + + L +A DGR+ T Q GA+ TGR S QN+P + Sbjct: 694 GALAAYRDNIKLAQT--VEGLQKAATEDGRVHTTFQQ-GAASTGRLSSTAPNLQNIPIRT 750 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-------KKLVVADLAGIEA 386 +R I + + L+ AD + IE Sbjct: 751 EEGRR-------------------------IRGAFIVAPEPIDGVEYEGLLTADYSQIEM 785 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++ +A ++ + A+E GEDL+ + F VAP VT +QR+ K M L Y Sbjct: 786 RIMVHLAADEKLIAAYEAGEDLHRYVGSEVFGVAPEDVTPEQRSKVKAMSYGLAYG---- 841 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 + LN+++ + + + F R + + + + G Sbjct: 842 -LSRFGLAKQLNISSDEAGELRTNYFKRFGRVGRFLRGVLKQAHQDGYTETIFGRRRVLP 900 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + R +A G A K + + R Sbjct: 901 DLDSPNRVRR-----EAAERAALNAPIQGTAADIIKIAMINIH----------------R 939 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 L + ++ I+L Sbjct: 940 RLREEGLKT------------------------------------RMLLQVHDE---IIL 960 Query: 627 TVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674 E + A + M+ S +PL + K ++ Sbjct: 961 --------EVATGEREAAERVLVEEMSGAAS--LRVPLDVQVGWGKSWQ 999 >gi|307199388|gb|EFN80013.1| DNA polymerase theta [Harpegnathos saltator] Length = 1937 Score = 183 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 86/676 (12%), Positives = 186/676 (27%), Gaps = 111/676 (16%) Query: 10 TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------PQVLKEALE 62 T L K + + A ++ + + +LKE L Sbjct: 1339 TEKKRKLKKSVNYIHGRK-EIRGAAISWESNIAYYISFSNTQDAKISTKEQITLLKELLS 1397 Query: 63 NTDVTIVAHNSYFE-RTVLKACFNLDIPIHRWICTLVLA--RSNGLPSALKAVGEAL--- 116 + + + + +L C + R++ ++ +N + Sbjct: 1398 DAALYVKCFAIK-DTYKLLYRCCAISAK-CRFLDPVIAHWLYTNDFEGNFSELVTQYFPQ 1455 Query: 117 -KLSSQKMEE----GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV-TRE 170 ++ G + + + H V + T Sbjct: 1456 GNFIMKRTNSCCNVGPGMDVQNSLPGEFRSAAEAVLTWHMTDSITSKLEELNPVLLHTFR 1515 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E + + + G V++ ++ E L+ L Sbjct: 1516 ---------DIEMRIATILACMELSGIGVNLKALQETLSVILSEMQSLETRAYDLAGRK- 1565 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +++ L L + +T + VL ++ + + + + Sbjct: 1566 FNLSSSKEVGQVLGLYKDKKV-----STSKAVLEKCDNP---ISRLVISWRKLNATKTKI 1617 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L+ D R+ G + TGR S QN+P+ Sbjct: 1618 VYPLLNLSQEDSRIHGNCI--TCTVTGRVSMHEPNLQNVPK------------------- 1656 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 + VR + + G ++ AD +E R+L + + + + D++ Sbjct: 1657 -DFHFEDNNLLVSVRRSFVPALGNVMLSADYCQLELRLLTHFSQDSVLCEIMKQQGDIFK 1715 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 + A+ NV +VT + R K + + Y G K+ + L ++ S Sbjct: 1716 SIAAKWNNVIEEEVTNEMRQRTKQLCYGMIYGMGVKSLAE-----NLCISETEAQHFLES 1770 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + + E + +G R++ + + E+ Sbjct: 1771 FMNAYPGIYKWLDDTLEKAHHNGYVTTLLGR---------RRQLPDLRSTKSSTRAQAER 1821 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 N K ++++ + D TR+L R Sbjct: 1822 QAVNTKV----------QGSAADIVKKAMIIIEEKMRHSFPD-SVIVFPETQGTRKLRRN 1870 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYH 649 SRD+L + G +VL +HDE++ E D + ++ Sbjct: 1871 ---------------SRDML--------QRGGYLVLQLHDELLYEVNSADLKEVAIIIKE 1907 Query: 650 LMTSNPSWAKGLPLKA 665 M LP+K Sbjct: 1908 SMEDVCQLTVPLPVKV 1923 >gi|71902066|ref|ZP_00684106.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71728177|gb|EAO30368.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 384 Score = 182 bits (462), Expect = 2e-43, Method: Composition-based stats. Identities = 142/384 (36%), Positives = 179/384 (46%), Gaps = 53/384 (13%) Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + D + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE Sbjct: 7 AVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETP 66 Query: 398 KLKAFETGEDL----------------------------------------YVTTYARSF 417 KL AF + Y YA SF Sbjct: 67 KLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSF 126 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 +AP VTK+QR IGKV ELALGY GG AF A+ ++L A P ++ Sbjct: 127 GIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL--PPLLLQE 184 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 A +W + N AC+ K+AWR H ++ W L A I + + Sbjct: 185 AVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPET 244 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREY 591 + M+ + L + LPSGR L Y D SY+ T TR+ TR Sbjct: 245 A-----HTCCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRIT 299 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM 651 TYGGKL ENI QAVSRD+LA M AGY IVLTVHDEI+ E D FNA+ L LM Sbjct: 300 TYGGKLVENITQAVSRDVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALM 359 Query: 652 TSNPSWAKGLPLKAEGYESKRYRK 675 + P WA+GLPL AEG+++ RYRK Sbjct: 360 ATPPPWAQGLPLAAEGFQTHRYRK 383 >gi|291456503|ref|ZP_06595893.1| DNA polymerase I [Bifidobacterium breve DSM 20213] gi|291381780|gb|EFE89298.1| DNA polymerase I [Bifidobacterium breve DSM 20213] Length = 951 Score = 182 bits (462), Expect = 2e-43, Method: Composition-based stats. Identities = 91/630 (14%), Positives = 184/630 (29%), Gaps = 141/630 (22%) Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 + H E L + L + + T + + +A + Sbjct: 435 IVHGYK-ELLHLLSAAGLGMAL-PMFDTKLGGYLAQPDFHADNLNQAAEHFLD------- 485 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY- 187 I + + + D + + E E D+ V RE+ L P+ + ++ W Sbjct: 486 -IHVVDAEQPAQGVLDFDDEHTEEDLN---ERRVHDLAVIRELAVTLGPVIDERRQYWLM 541 Query: 188 ---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + + G +D + + + + QE+ G + + ++ Sbjct: 542 RAIELPVSRVLHGMEQSGAKIDRSRLTDMRDRFAAD-ARQAQEMAWQYAGGEINLQSPKQ 600 Query: 239 LKTWLFLETGLHLEDLTE----TTCQRVLSSN-------KKLTPQAIQVFNNRMRASRSA 287 L+ LF++ GL T+ TT L + ++ + +R Sbjct: 601 LQKVLFVDMGLKPTKRTKNGSYTTNAAALQNLYIHSVDNEQANGFLGALLRHRETNKLKQ 660 Query: 288 VLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + + TL++A N D R+ T + A+ TGR S QN+P + E Sbjct: 661 I--VQTLIDATNKADERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAVGRE-------- 709 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +RS + EG + L+ D + +E R++A ++G++ ++AF +G Sbjct: 710 -----------------IRSVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSG 752 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D + + + V Q+T DQR+ K M L Y LN+ Sbjct: 753 ADFHKYVASMVYGVPVDQITGDQRSHVKAMSYGLAYG-----LSTYGLAQQLNIAQREAE 807 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 N + + ++ + E + G R+ + Sbjct: 808 ALKNRYFDTFGKVHDYLESLVATAREKGYTETIFGR---------RRYFPALRSTNRMAR 858 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 A E+ L G+ + Sbjct: 859 DAAERAA-----------------------------------LNAPIQGSAADIMKIAMI 883 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA- 644 + + G + I+Q +V E + Sbjct: 884 RAGQALDEAGVKSRIILQ-------------IHDE-----------LVVEIAPGESEQVT 919 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++ + M A +PL ++ Sbjct: 920 ELIRNAMEHAVDLA--VPLDVSCGIGSDWQ 947 >gi|168060384|ref|XP_001782176.1| predicted protein [Physcomitrella patens subsp. patens] gi|162666342|gb|EDQ52999.1| predicted protein [Physcomitrella patens subsp. patens] Length = 808 Score = 182 bits (462), Expect = 2e-43, Method: Composition-based stats. Identities = 69/410 (16%), Positives = 120/410 (29%), Gaps = 96/410 (23%) Query: 277 FNNRMRASRSAVLKLNTL----VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + + L ++++ SDGR+ +L + TGR S QN P Sbjct: 478 LCEVASINTLLSNFIEPLQGNDIKSV-SDGRVHCSLNIN--TETGRLSARRPSLQNQP-- 532 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 L+ +R +A+ GK LVVAD +E R+LA + Sbjct: 533 -----------------------ALEKDRYKIRQAFVAAPGKALVVADYGQLELRLLAHL 569 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 A + AF G D + T + V KD + + Sbjct: 570 ADCKSMKAAFIAGGDFHSRTAMNMYPHVREAVEKD---------------------RVLL 608 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 GL L + NF + A + + W Sbjct: 609 EWEGLEKPPVPLLKDMFGSERRKAKMLNFSIAYGKTAMGLAKDWNVKLDEAKATVDLWYS 668 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 V E Q +T L + GR+ D Sbjct: 669 DRPEVLAWQKERKQEAHET--------------------------LRVHTLLGRARHLPD 702 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVL 626 + ++ S L + + R Q + D+ M+ + G+ ++L Sbjct: 703 INSSNSLLRSH---MERAAINTPVQ-----QGSAADVAMCAMLEINQNARLRELGWKLLL 754 Query: 627 TVHDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673 VHDE++ E P ++ E ++ M + L +G ++ + Sbjct: 755 QVHDEVILEGPLESAEEAKELVIKSMMYPFNGENILDVELVVDGDYAENW 804 Score = 98.6 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 83/301 (27%), Gaps = 67/301 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFA--------FGFDDHPVELWDCVHDPVMPQV 56 D E + ID+ K + F+ FG+ + + + + +V Sbjct: 41 ACDTE-VAGIDVKKESP---VGHGQITCFSIYCGPGADFGYGKNRLWVDVLDGGDDVLRV 96 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-------PSAL 109 K E+ + V HN F++ +L + P + T+ LAR N AL Sbjct: 97 FKRYFEDPSIQKVWHNYSFDKHILSRH-GIH-PQGFYADTMHLARLNDSARRGSKGGYAL 154 Query: 110 KAVGEALKLSSQ-------------------KMEEGKELIARFCKGETHECLYDRNKPNH 150 + + K+ K GK + + + + ++ Sbjct: 155 EVLSADRKVMDYCSKNFTEEDGSVFVGKKSMKELFGKAKLKKDGTPGKIKVVPPVDELQR 214 Query: 151 REAW-RLFGEYCKGDVTVTREIFKRLEPLS---------------------SKEQELWYL 188 E + Y D T +F L+ + + Sbjct: 215 DEELRDAWIHYSTLDAVCTWRLFVSLQHKLSNTPWSVAELRHKGSMYDFYEKYWRPFGEV 274 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV-----SSSRCLEKLKTWL 243 + G VD T+ ++ ++ + +++ +L Sbjct: 275 LVQMEAYGMLVDYDHLATVEKLARAQQKISVSRFRKWAARYCPNAARMNVGSDAQIRQFL 334 Query: 244 F 244 F Sbjct: 335 F 335 >gi|126332210|ref|XP_001374207.1| PREDICTED: similar to polymerase (DNA directed) nu, [Monodelphis domestica] Length = 816 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 84/576 (14%), Positives = 167/576 (28%), Gaps = 128/576 (22%) Query: 65 DVTIVAHNSY-FERTVLKACFNL----DIPIHRWICTLVLARSNGLP---SALKAVGEAL 116 T++ N+ F +TVL+ + + + + A S+ + + Sbjct: 316 KHTVICFNAKEFVKTVLQVYGSYCHWKHVVDFVVLDPRIAAWLLDPSDTISSFEDLVRKY 375 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 S M K N + L Y V + ++ Sbjct: 376 FEESVTM-----------KVNNTNGGSSHNMMFSNQRKNLRILYRIT-VDLCSKLKVCGL 423 Query: 177 PLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 EL + + + VD ++++ +L+QE + G Sbjct: 424 WQLFYTLELPLIPILAVMETHKFQVDKEEMKRTSKLLGCRLKELEQEAH-VAAGEQFLVT 482 Query: 235 CLEKLKTWLFLETGLHL--EDLT---------ETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +L+ LF + LHL + T +T + VL++ + L P + R Sbjct: 483 SNNQLREVLFDKLKLHLLCKSKTLPKTELQKHPSTSEAVLNALQDLHPLPKIILEYRQ-I 541 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + ++ L+ M G + T G + +GR S Q + + + Sbjct: 542 HKVKSTFVDGLLSCMRK-GFIAPTWNQTG-TVSGRLSAKKPNIQGISKHPIQITKHQYEQ 599 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 T P R+ I+S+G + AD + IE R+LA ++ + LK F+ Sbjct: 600 GKEDEKTTVSP----------RTMFISSKGYTFLAADFSQIELRILAHLSCDPELLKLFQ 649 Query: 404 TGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 E D++++ ++ + QVT +R K + ++ G Sbjct: 650 EPESLDVFMSLTSQWKGIPLEQVTHVEREQTKRIVYSVV--------------YGAGKER 695 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 A + +++ QK+ ++ + Sbjct: 696 LAAC------------------------------LGVTSLQSSQFIESFLQKYKKIHDF- 724 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + Q G GR ++ L Sbjct: 725 --TQETIMQCHHKGYVTSI-----------------------MGRRRPLPNINAKDYRLR 759 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 T Q R+ +VQ + D+ M+ Sbjct: 760 T---QAERQA------VNFVVQGSAADLCKIAMIRI 786 >gi|145640969|ref|ZP_01796551.1| DNA polymerase I [Haemophilus influenzae R3021] gi|145274483|gb|EDK14347.1| DNA polymerase I [Haemophilus influenzae 22.4-21] Length = 635 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 85/273 (31%), Gaps = 48/273 (17%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51 + +D ET S ++ ++ +F ++ + Sbjct: 354 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 +K LEN ++ + N F+ ++ +++ T++L+ + + Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 461 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + G E IA E+ ++ EY D VT Sbjct: 462 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLEQATEYAAEDADVTM 509 Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L E L ++ + G +D + + T L Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTAL 569 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 +++ +L + ++L+ LF + GL + Sbjct: 570 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPV 601 >gi|118362992|ref|XP_001014571.1| DNA polymerase I family protein [Tetrahymena thermophila] gi|89296488|gb|EAR94476.1| DNA polymerase I family protein [Tetrahymena thermophila SB210] Length = 988 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 62/459 (13%), Positives = 133/459 (28%), Gaps = 102/459 (22%) Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 + L +++ ++ + + + + ++ Sbjct: 621 IGKLLKNNQLAAKVYNQIGEYYKQKGDEEMGKRASHAIESLIQL---------------K 665 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L E + DGR+ +L + TGR S N P + + Sbjct: 666 QVETLLTTFIIPLRELADKDGRIHCSLNMN--TETGRISARKPNLMNQPSHDKDVYK--- 720 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +RS A +G KL+VAD +E R+LA M + ++A Sbjct: 721 ----------------------IRSAFQAGKGNKLIVADYGQLELRILAHMTNCKAMIEA 758 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F+ G D + T + ++ + EL L + Sbjct: 759 FKMGGDFHSRTAMGMYPKLKEEI--------EKGELLLEWDKSQG------------EPP 798 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 L S+ + NF ++ + + + AW V E Sbjct: 799 APLLKDKYSSERKKAKMMNFSIAYGKSAHGFSKDWNCSMKEAQEALDAWFADRKEVKEWQ 858 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + +E+G GR + +++S Sbjct: 859 ---ENTKKIALEHGYTQTM-----------------------MGRYRNLERLTHSKSA-R 891 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635 + R +Q + D++ M+ + GY ++L +HDE++ E Sbjct: 892 HLVQHGLRASINTP------IQGGAADLVIAAMVKVSQDPKLNELGYKLLLQIHDELILE 945 Query: 636 TPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 P+ + + + +M + L ++ + + Sbjct: 946 GPEEHAQEALARVIEIMENPLDTPLLLKMEVDAKVGNNW 984 Score = 76.3 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 35/298 (11%), Positives = 80/298 (26%), Gaps = 28/298 (9%) Query: 7 DFET-RSPIDLTK-CGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALEN 63 D ET L G K F + P D + + Q+ KE LE+ Sbjct: 97 DTETIDVDAKLESPIGKGKIICASAFCGIDVDFGNGPRLFIDNFAQNTDLIQIFKEYLED 156 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 + + HN F+R + +++ T+ LAR K A ++ Sbjct: 157 SRYKKIWHNYGFDRHIFYNH-GINVQGFG-GDTMHLARLADPSRGPKEYSLA-NVTKHYE 213 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 EE K L + ++ + + + + + EI ++ + + Sbjct: 214 EEIKYLKRQLIND------LRKSIQINTQELQSVLAALQKGADLPHEIIQKFKLHRFNTR 267 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQ-IVDVERTKLDQELE---------SLTYGLVSSS 233 + + + + A + ++ ++L + + Sbjct: 268 DEQIFFINDQIQKWLIKKQPADQYEKYYLNTNLKTNMKQLFGKKKYLKDGKEGKTIEFPN 327 Query: 234 RCLEKLKTWLFLE------TGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 L + + + L S + + + + Sbjct: 328 TIRMHTDPELLEKWVHYSCLDAEITFFVFQVLKDELKSLSTNFEDMKNMLDLYNKYWK 385 >gi|62327352|ref|YP_224065.1| hypothetical protein BPKS7gp43 [Salmonella phage SS3e] gi|57472386|gb|AAW51248.1| hypothetical protein [Salmonella phage SS3e] Length = 306 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 93/292 (31%), Positives = 124/292 (42%), Gaps = 45/292 (15%) Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ-- 486 + EL LGY+GG AF A GL+L A + W W + Sbjct: 15 FLVAHNCELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQ 74 Query: 487 ----------ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG- 535 ++ I D + C+ +K+ WR+ H W +L + N Sbjct: 75 EAKRPPHPGEKDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPG 134 Query: 536 --------------KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS--- 578 +AI + + K L + LPSGR L Y +G + + Sbjct: 135 REFWAGAHLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKET 194 Query: 579 ---------------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623 N TRQ T YT+GGK ENIVQA+ RD+LA M+N GY Sbjct: 195 DEDGRINTNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYP 254 Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IVL+VHDE+VCETPDT ++ + L LM + P WA G PL AEG E KRY K Sbjct: 255 IVLSVHDELVCETPDTSDYTVAELEKLMCALPEWADGFPLVAEGAELKRYAK 306 >gi|188496446|ref|ZP_03003716.1| DNA polymerase [Escherichia coli 53638] gi|188491645|gb|EDU66748.1| DNA polymerase [Escherichia coli 53638] gi|323173133|gb|EFZ58764.1| DNA polymerase 1 [Escherichia coli LT-68] Length = 231 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 11/234 (4%) Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 AF A L+L+ A+ N + +A+++ + + + + AC+ + Sbjct: 3 AFITFALVYSLDLDELANAALPNIPRDVIREAKSWYYESVKRKSTYGLSERVFI-ACDSL 61 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 K+ WR+ H + W EL + I + + + +++D L + LPSGR Sbjct: 62 KRLWRRAHPATCDFWYELERTVRTAIATPQKTL-----YCGYLKIRRDGAWLRIQLPSGR 116 Query: 567 SLVYRDV---GNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 ++ Y N +Y+ N+ +R+ R TYGGKL EN+ QA +RD+LA M AG Sbjct: 117 AVCYPSPVIEKGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAG 176 Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 Y IVLTVHDEI+ E PD+ +++A + L+ + P WA +PL A G+ES RYRK Sbjct: 177 YSIVLTVHDEIISEAPDSPDYSAEHVSQLLATVPDWATSIPLNAGGFESYRYRK 230 >gi|145640968|ref|ZP_01796550.1| DNA polymerase I [Haemophilus influenzae R3021] gi|145274482|gb|EDK14346.1| DNA polymerase I [Haemophilus influenzae 22.4-21] Length = 314 Score = 181 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 62/411 (15%), Positives = 110/411 (26%), Gaps = 103/411 (25%) Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 ++ S+ + L + +NS T + TGR S Sbjct: 2 EELSYSHELP-KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSD 60 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+P + +R IA EG +V AD + Sbjct: 61 PNLQNIPIRNEEGRR-------------------------IRQAFIAREGYSIVAADYSQ 95 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q + AF G+D++ +T A F V+ +VT +QR K + L Y Sbjct: 96 IELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGM 155 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 A + L ++ + + + + F ++ + G Sbjct: 156 SA-----FGLSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRL 210 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 R + G A KR + + + Sbjct: 211 YLPDINSSNAMRR-----KGAERVAINAPMQGTAADIIKRAMIKIDEVI----------- 254 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623 D+ E I+Q Sbjct: 255 ----RHDPDI-------------------------EMIMQ-------------VHDE--- 269 Query: 624 IVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 +V E + F + M + +PL E K + Sbjct: 270 --------LVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGKNW 310 >gi|260794541|ref|XP_002592267.1| hypothetical protein BRAFLDRAFT_70998 [Branchiostoma floridae] gi|229277483|gb|EEN48278.1| hypothetical protein BRAFLDRAFT_70998 [Branchiostoma floridae] Length = 595 Score = 181 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 77/626 (12%), Positives = 175/626 (27%), Gaps = 85/626 (13%) Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 V + + L A ++ + + V + + + Sbjct: 13 KVF-DLKAQYKALAAGCDITMN-GNFQDPKVADWLLDPD------AKVKRFDEMVKGQFT 64 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----- 182 + +G + + + + T + +L L ++ Sbjct: 65 PQESDLLQGLREC-FGEGSLSMTVQNAGSGQTRAALECVFTFHLMVKLSKLLEEQGLSTA 123 Query: 183 -----QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + G + T Q++ L++ L + + Sbjct: 124 FRNVEMPSLVALARLELNGAGFNPEECETQCQVMKDRLRMLEERAHKLAGHT-FALNSTK 182 Query: 238 KLKTWLFLETGLHL---EDLTE------TTC-QRVLSSNKKLTPQAIQ--VFNNRMRASR 285 + L+ E L + +T + VL K P V S Sbjct: 183 AVDKVLYEEKKLEINEDPSTNSQPQERLSTSRKGVLEKLKTSHPLHPLPGVILKWKHISN 242 Query: 286 SAVLKLNTLVE--AMNSD---GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 K+ L + N R+ T A+ GR + Q +P+ E+ Sbjct: 243 LLN-KVTPLQKKNVYNPRLNMDRIYSTCNLHTAT--GRVAFHDPNLQFIPK--EFEIEMP 297 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + + + + C+R I +G ++ AD + +E R++A ++ + + Sbjct: 298 TDTNNEDGPPAAGEETMSKRKVCMRHAFIPFKGGVILAADYSQLEVRIMAHLSKDSKLTQ 357 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 A +G+D++ ++ VA V+ R K + + Y G K G++ Sbjct: 358 ALNSGQDVFKAIASQWKGVAVEHVSDKLRQQAKQLYYGIIYGMGPKTL---GEKLGVSKE 414 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + + + + + Sbjct: 415 EGKRR--IETFKSSYTGIQRYRQTTVDQCKRNGYVQTMAERRRYLPDINGEDYYK----- 467 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 ++ + T G A K+ V + L P R G + + Sbjct: 468 LSQAERQAFNTTIQGSAADLVKKAMVLIDQ------RLQQEFPDTRRSHRH--GESTAAA 519 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 T ++ +++ + G ++L +HDE++ E + D Sbjct: 520 ADTDKRRSQQPSSPP------------------------RGAYLILQLHDELIYEVHEED 555 Query: 641 EFNASMLYHL-MTSNPSWAKGLPLKA 665 E + + M + LP+K Sbjct: 556 EQKVAQIVKHKMEKAMELSVELPVKV 581 >gi|255327557|ref|ZP_05368624.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296] gi|255295451|gb|EET74801.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296] Length = 1003 Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats. Identities = 101/708 (14%), Positives = 191/708 (26%), Gaps = 165/708 (23%) Query: 17 TKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYF 75 TK I E+ ++ + D DP + L L + + Sbjct: 407 TKTKIRAAEENPELLGVLL-TSKNTSLWIDTRSIDPELDAALAAWLSDEAARKIV----M 461 Query: 76 ERTV---LKACFNLDIPIHRWICTLVLARSNGL---------PSALKAVGEALK------ 117 + V L + ++ + + G ++ + E Sbjct: 462 DLKVQRKLLRAYGYELA-GAVEDPALSSYMCGFIPTATRKLFSERMEDLAERYLWIPKDP 520 Query: 118 -----LSSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREI 171 ++ E L + + E + L Y E Sbjct: 521 YAQLVFQPEEDEAEPSLFSLPGEAEPVDNLRYFTQISRIIHELARLLHY-------EMEE 573 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG--- 228 +L+ E L Y+ + G V AL L+ + ++ Sbjct: 574 HGQLKVYEEIELPLLYVLADMEQAGIAVSDALLTELHDTFSARANQAQDAARTIIGDTVQ 633 Query: 229 -----LVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR-VLSSNKKLTPQ-----AI 274 + +++L+T LF + L ++ T V K++P+ + Sbjct: 634 TDDGEEPLNLASVKQLQTVLFDKLALPHTRKIKSGYSTDAESVTELLAKISPESDGAAFL 693 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + L +A DGR+ T Q GA+ TGR S QN+P + Sbjct: 694 GALAAYRDNIKLVQT-VEGLQKAAADDGRVHTTFQQ-GAASTGRLSSTAPNLQNIPIRTE 751 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-------LVVADLAGIEAR 387 +R I + L+ AD + IE R Sbjct: 752 EGRR-------------------------IRGAFIVAPAPVDGVEYEGLLTADYSQIEMR 786 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++ +A ++ + A+E GEDL+ + F VAP +VT +QR+ K M L Y Sbjct: 787 IMVHLAADEKLIAAYEAGEDLHRYVGSEVFGVAPEEVTPEQRSKVKAMSYGLAYG----- 841 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + LN+++ + + + F R + + + + G Sbjct: 842 LSRFGLAKQLNISSDEAGELRTNYFKRFGRVGRFLRGVLKQAHQDGYTETIFGRRRVLPD 901 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + R +A G A K + + R Sbjct: 902 LDSPNRVRR-----EAAERAALNAPIQGTAADIIKIAMINIH----------------RR 940 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 L + ++ I+L Sbjct: 941 LREEGLKT------------------------------------RMLLQVHDE---IIL- 960 Query: 628 VHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674 E + A + M+ S +PL + K ++ Sbjct: 961 -------EVATGEREAAERVLVEEMSGAAS--LRVPLDVQVGWGKSWQ 999 >gi|76880150|dbj|BAE45850.1| DNA polymerase [Nicotiana tabacum] Length = 1152 Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats. Identities = 60/408 (14%), Positives = 112/408 (27%), Gaps = 91/408 (22%) Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + L + +GR+ +L + TGR S QN P Sbjct: 821 LCEMCSIGSLISNFILPLQGQDVSGENGRIHCSLNIN--TETGRLSARRPNLQNQP---- 874 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 L+ +R +A++G L+VAD +E R+LA +A Sbjct: 875 ---------------------ALEKDRYKIRQAFVAAQGNSLIVADYGQLELRILAHLAN 913 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L AF+ G D + T + V + + Sbjct: 914 CKSMLDAFKAGGDFHSRTAMNMYTHIREAVEN------------------GRVLLEWHPQ 955 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G L + NF + A + + W + Sbjct: 956 PGEEKPPVPLLKDAFGSERRKAKMLNFSIAYGKTTIGLARDWKVSVKEAKETVDRWYRDR 1015 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 VS+ + + + GR+ + V Sbjct: 1016 KEVSDWQEQRKFEARE--------------------------FRRVHTLLGRARWFPSVK 1049 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTV 628 N + + R VQ + D+ M+ + G+ ++L V Sbjct: 1050 N---ATGSVKGHIERAAINTP------VQGSAADVAMCAMLEISKNARLEELGWKLLLQV 1100 Query: 629 HDEIVCETPDTDE-FNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673 HDE++ E P+ E +++ M+ + L + +K + Sbjct: 1101 HDEVILEGPEESENEAMAIVVDCMSKPFGGKNILRVDLSVDSKCAKNW 1148 Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats. Identities = 43/347 (12%), Positives = 93/347 (26%), Gaps = 79/347 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DCVHDP--VMPQ 55 D E + ID+ + + +I F+ F D +W D + + Sbjct: 388 ACDTE-VAKIDVKQQTP---VDHGEIICFSIYSGPEADFGDGKSCIWVDVLDGDGKNLLV 443 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------SA 108 ++ + V HN F+ V++ + + T+ +AR + Sbjct: 444 EFAPFFQDPSIRKVWHNYSFDNHVIENY---GFKVSGFHADTMHMARLWDSSRRTSGGYS 500 Query: 109 LKAV--------------GEALKLSS-------QKMEEGKELIARFCKGETHECLYDRNK 147 L+A+ E L K G++ + + + + Sbjct: 501 LEALTGDSTVMRDARPVHAERLFHGEGLFGKISMKTIFGRKKLKKDGTEGKVTVIPSVEE 560 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWY 187 L+ Y D T +++ L+ + Sbjct: 561 LQK-TERELWICYSALDSISTLMLYESLKNKLAKRIWTFDGVRKGSMYEFYEKYWRPFGE 619 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG-----LVSSSRCLEKLKTW 242 L + G VD A + ++ E+ + + +L+ Sbjct: 620 LLVQMETEGVLVDRAYLAEIEKVAKAEQQVAANRFRNWAAKYCHDAKYMNVGSDTQLRQL 679 Query: 243 LF--------LETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNR 280 F + L E + +V KK + ++ +R Sbjct: 680 FFGGIQNRKNSDESLPYEKEFKVPNIDKVTEEGKKAPTKFRKIRLHR 726 >gi|332019330|gb|EGI59836.1| Helicase POLQ-like protein [Acromyrmex echinatior] Length = 2176 Score = 181 bits (458), Expect = 4e-43, Method: Composition-based stats. Identities = 92/672 (13%), Positives = 195/672 (29%), Gaps = 122/672 (18%) Query: 17 TKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMPQVLKEALENTD-VTI 68 K G + + + A ++ + + +LK+ L +T Sbjct: 1588 RKSGNYSH-GNKEIRGVAISWESNIAYYISFSNSQESKVSGKEQMALLKDLLYDTTLYMK 1646 Query: 69 VAHNSYFER-TVLKACFNLDIPIHRWICTLVLA--RSNGLPSALKAVGEALKLSSQKMEE 125 + + +L C + R++ ++ +N + L+ Q Sbjct: 1647 CF--ATKDIYKLLYQCCGITAK-CRFLDPIIGHWLYTNDFERNFNEM--VLEYFQQG--- 1698 Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK---- 181 +I + K + + + +R E +T + + + Sbjct: 1699 --NVIMKRIKSCYYAGPGMDARNSLPGEFRSAAE-----AVLTWHMMDNIMNKLEELNPA 1751 Query: 182 --------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 E + + G V++ L+ +V E L+ + L + Sbjct: 1752 LLYTFREVEMRIMTTLACMELSGIGVNLKSLQELSSVVSNEMQSLETKAYDLAGRK-FNF 1810 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 +++ L L + +T + VL + + + + + + Sbjct: 1811 SSSKEVGQVLGLYKDKKV-----STSKTVLEKCDNP---ISTLVISWRKLNATKTKMIYP 1862 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L+ D R+RG + TGR S QN+P+ Sbjct: 1863 LLNLAQGDSRVRGNCI--TCTVTGRVSMHEPNLQNVPK--------------------DF 1900 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 + VR + G ++ AD +E R+L + + K + D++ Sbjct: 1901 SFADNNLVVSVRMAFVPVLGNIMLSADYCQLELRLLTHFSQDSILCKIMKQSGDIFKNIA 1960 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 A+ NVA QVT + R K + + Y G K+ + L ++ S Sbjct: 1961 AKWNNVAEEQVTNEMRQRTKQLCYGMIYGMGVKSLAE-----NLCISEPEAQEFLESFMS 2015 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + E +G R++ +S + + E+ Sbjct: 2016 AYPGIYKWLNDILEEAHHDGYVTTLLGR---------RREFPDLSSTKSSVRAQAERQSV 2066 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 N K + + +DK + D + + + R Sbjct: 2067 NTKVQGSAADIVKKAMISIEDKI----------RCYFPD--SAIIFPEVHASRKLRS--- 2111 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMT 652 N + G +VL +HDE++ E D A+++ M Sbjct: 2112 ----------------------NLQQRGGYLVLQLHDELLYEVNLADLKKFAAIIRESME 2149 Query: 653 SNPSWAKGLPLK 664 + LP+K Sbjct: 2150 NVCQLTVPLPVK 2161 >gi|302142870|emb|CBI20165.3| unnamed protein product [Vitis vinifera] Length = 1118 Score = 181 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 60/408 (14%), Positives = 113/408 (27%), Gaps = 91/408 (22%) Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + L E +GR+ +L + TGR S QN P Sbjct: 787 LCEVCSINSLISNFILPLQDGEISGKNGRIHCSLNIN--TETGRLSARRPNLQNQP---- 840 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 L+ +R IA+ G L+VAD +E R+LA +A Sbjct: 841 ---------------------ALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLAN 879 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L AF+ G D + T + V K + + Sbjct: 880 CKSMLNAFKAGGDFHSRTAMNMYPHIREAVEKREV------------------LLEWHPQ 921 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G + L + NF + A + + W ++ Sbjct: 922 PGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARDWKVSVREARETVERWYKER 981 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + + + GR+ + V Sbjct: 982 KEVLAWQEKRKKEATTLK--------------------------YVCTLLGRARSFPSVH 1015 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTV 628 + + + R VQ + D+ M+ + G+ ++L V Sbjct: 1016 H---ATASQRGHIERAAINTP------VQGSAADVAMCAMLEISRNARLKELGWKLLLQV 1066 Query: 629 HDEIVCETP-DTDEFNASMLYHLMTSNPSW--AKGLPLKAEGYESKRY 673 HDE++ E P ++ E +++ M + L + ++ + Sbjct: 1067 HDEVILEGPTESAEVAKAIVVECMEKPFDGKNILSVDLAVDAKCAQNW 1114 Score = 110 bits (276), Expect = 5e-22, Method: Composition-based stats. Identities = 46/341 (13%), Positives = 95/341 (27%), Gaps = 73/341 (21%) Query: 2 ATL--FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DCVHDP- 51 L D E + + +I F+ F + +W D + Sbjct: 355 KHLIHACDTE----VANIDVKRETPVDHGEIICFSIYSGPEADFGNGKSCIWVDVLDGGG 410 Query: 52 -VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP--- 106 + E+ + V HN F+ V++ D+ + + T+ +AR Sbjct: 411 RDLLVEFAPFFEDPSIQKVWHNYSFDNHVIENY---DLKVSGFHADTMHMARLWDSSRRA 467 Query: 107 ---SALKAVGEALK-LSSQKMEEGKELIARFC-------KGETHECLYDRNKPNHR---- 151 +L+A+ K +S M G+ELI + K + + Sbjct: 468 VGGYSLEALTRDSKVMSGAHMSNGEELIGKVSMKTIFGKKKLKKDGTEGKIITIAPVEVL 527 Query: 152 --EAWRLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWYLD 189 E + + Y D T ++++ ++ + L Sbjct: 528 QREDRKPWISYSALDSMSTLKLYESMKNKLLDKEWLLDGARKGCMFDFYQKYWRPFGELL 587 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQEL-----ESLTYGLVSSSRCLEKLKTWLF 244 + G VD A + ++ E + + +L+ LF Sbjct: 588 VQMETEGMLVDRAYLSKVEKVAKAEEQVAANRFRNWASKHCPDAKYMNVGSDTQLRQLLF 647 Query: 245 LETG--------LHLEDLTE-TTCQRVLSSNKKLTPQAIQV 276 L +E + +V+ KK + + Sbjct: 648 GGVANRKDPNECLPMEKTFKIPNVDKVIEEGKKAPTKFRNI 688 >gi|148665537|gb|EDK97953.1| polymerase (DNA directed), theta, isoform CRA_c [Mus musculus] Length = 2273 Score = 181 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 89/777 (11%), Positives = 190/777 (24%), Gaps = 216/777 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE---------------------- 62 + V+ A + + +L Sbjct: 1579 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1637 Query: 63 ---NTDVTIVAHNSYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-GE 114 + + ++V ++ VL + + + V S + Sbjct: 1638 KKSDRERSVVT----YDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 1692 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFK 173 ++ + + + + +R + + + + Sbjct: 1693 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 1752 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + E Y + G A + ++ + ++ + L S Sbjct: 1753 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHS-FSF 1811 Query: 234 RCLEKLKTWLFLETGLHL--------EDLTE-------------------TTCQRVLSSN 266 + + LFLE L T +T + +L+ Sbjct: 1812 TSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKL 1871 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCV 323 K L P + R S + + L + + LR + + + TGR + Sbjct: 1872 KGLHPLPGLILEWRR-ISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRITFTE 1930 Query: 324 FPPQNLPRP--------------------------SRSHEELDQIITHLPTSITSDPDPL 357 QN+PR + + H D Sbjct: 1931 PNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRG 1990 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 S +R + G ++ AD + +E R+LA ++ + ++ TG D++ + A Sbjct: 1991 VPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWK 2050 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 + P V D R K + + Y GAK+ + + + +S ++ Sbjct: 2051 MIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKSRYKG 2105 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 +F R +N ++ + +G R+ + + Sbjct: 2106 INHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDN---------------- 2140 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 Y R +NTT Sbjct: 2141 -------------------------------PYHKAHAERQAINTT-------------- 2155 Query: 598 TENIVQAVSRDILAEGMMNATK-------------------------------------- 619 VQ + DI+ +N K Sbjct: 2156 ----VQGSAADIVKIATVNIQKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCP 2211 Query: 620 -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M + LK + + Sbjct: 2212 MRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMECAIK--LSVKLKVKVKIGASWG 2266 >gi|148665538|gb|EDK97954.1| polymerase (DNA directed), theta, isoform CRA_d [Mus musculus] Length = 2398 Score = 181 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 89/777 (11%), Positives = 190/777 (24%), Gaps = 216/777 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE---------------------- 62 + V+ A + + +L Sbjct: 1704 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1762 Query: 63 ---NTDVTIVAHNSYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-GE 114 + + ++V ++ VL + + + V S + Sbjct: 1763 KKSDRERSVVT----YDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 1817 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFK 173 ++ + + + + +R + + + + Sbjct: 1818 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 1877 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + E Y + G A + ++ + ++ + L S Sbjct: 1878 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHS-FSF 1936 Query: 234 RCLEKLKTWLFLETGLHL--------EDLTE-------------------TTCQRVLSSN 266 + + LFLE L T +T + +L+ Sbjct: 1937 TSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKL 1996 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCV 323 K L P + R S + + L + + LR + + + TGR + Sbjct: 1997 KGLHPLPGLILEWRR-ISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRITFTE 2055 Query: 324 FPPQNLPRP--------------------------SRSHEELDQIITHLPTSITSDPDPL 357 QN+PR + + H D Sbjct: 2056 PNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRG 2115 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 S +R + G ++ AD + +E R+LA ++ + ++ TG D++ + A Sbjct: 2116 VPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWK 2175 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 + P V D R K + + Y GAK+ + + + +S ++ Sbjct: 2176 MIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKSRYKG 2230 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 +F R +N ++ + +G R+ + + Sbjct: 2231 INHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDN---------------- 2265 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 Y R +NTT Sbjct: 2266 -------------------------------PYHKAHAERQAINTT-------------- 2280 Query: 598 TENIVQAVSRDILAEGMMNATK-------------------------------------- 619 VQ + DI+ +N K Sbjct: 2281 ----VQGSAADIVKIATVNIQKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCP 2336 Query: 620 -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M + LK + + Sbjct: 2337 MRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMECAIK--LSVKLKVKVKIGASWG 2391 >gi|148665536|gb|EDK97952.1| polymerase (DNA directed), theta, isoform CRA_b [Mus musculus] Length = 2119 Score = 181 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 89/777 (11%), Positives = 190/777 (24%), Gaps = 216/777 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE---------------------- 62 + V+ A + + +L Sbjct: 1425 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1483 Query: 63 ---NTDVTIVAHNSYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-GE 114 + + ++V ++ VL + + + V S + Sbjct: 1484 KKSDRERSVVT----YDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 1538 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFK 173 ++ + + + + +R + + + + Sbjct: 1539 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 1598 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + E Y + G A + ++ + ++ + L S Sbjct: 1599 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHS-FSF 1657 Query: 234 RCLEKLKTWLFLETGLHL--------EDLTE-------------------TTCQRVLSSN 266 + + LFLE L T +T + +L+ Sbjct: 1658 TSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKL 1717 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCV 323 K L P + R S + + L + + LR + + + TGR + Sbjct: 1718 KGLHPLPGLILEWRR-ISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRITFTE 1776 Query: 324 FPPQNLPRP--------------------------SRSHEELDQIITHLPTSITSDPDPL 357 QN+PR + + H D Sbjct: 1777 PNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRG 1836 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 S +R + G ++ AD + +E R+LA ++ + ++ TG D++ + A Sbjct: 1837 VPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWK 1896 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 + P V D R K + + Y GAK+ + + + +S ++ Sbjct: 1897 MIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKSRYKG 1951 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 +F R +N ++ + +G R+ + + Sbjct: 1952 INHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDN---------------- 1986 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 Y R +NTT Sbjct: 1987 -------------------------------PYHKAHAERQAINTT-------------- 2001 Query: 598 TENIVQAVSRDILAEGMMNATK-------------------------------------- 619 VQ + DI+ +N K Sbjct: 2002 ----VQGSAADIVKIATVNIQKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCP 2057 Query: 620 -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M + LK + + Sbjct: 2058 MRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMECAIK--LSVKLKVKVKIGASWG 2112 >gi|32306445|gb|AAN39838.1| DNA polymerase Q [Mus musculus] Length = 2587 Score = 181 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 89/777 (11%), Positives = 190/777 (24%), Gaps = 216/777 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE---------------------- 62 + V+ A + + +L Sbjct: 1893 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1951 Query: 63 ---NTDVTIVAHNSYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-GE 114 + + ++V ++ VL + + + V S + Sbjct: 1952 KKSDRERSVVT----YDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 2006 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFK 173 ++ + + + + +R + + + + Sbjct: 2007 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 2066 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + E Y + G A + ++ + ++ + L S Sbjct: 2067 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHS-FSF 2125 Query: 234 RCLEKLKTWLFLETGLHL--------EDLTE-------------------TTCQRVLSSN 266 + + LFLE L T +T + +L+ Sbjct: 2126 TSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKL 2185 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCV 323 K L P + R S + + L + + LR + + + TGR + Sbjct: 2186 KGLHPLPGLILEWRR-ISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRITFTE 2244 Query: 324 FPPQNLPRP--------------------------SRSHEELDQIITHLPTSITSDPDPL 357 QN+PR + + H D Sbjct: 2245 PNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRG 2304 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 S +R + G ++ AD + +E R+LA ++ + ++ TG D++ + A Sbjct: 2305 VPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWK 2364 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 + P V D R K + + Y GAK+ + + + +S ++ Sbjct: 2365 MIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKSRYKG 2419 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 +F R +N ++ + +G R+ + + Sbjct: 2420 INHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDN---------------- 2454 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 Y R +NTT Sbjct: 2455 -------------------------------PYHKAHAERQAINTT-------------- 2469 Query: 598 TENIVQAVSRDILAEGMMNATK-------------------------------------- 619 VQ + DI+ +N K Sbjct: 2470 ----VQGSAADIVKIATVNIQKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCP 2525 Query: 620 -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M + LK + + Sbjct: 2526 MRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMECAIK--LSVKLKVKVKIGASWG 2580 >gi|226823286|ref|NP_001152841.1| DNA polymerase theta isoform 2 [Mus musculus] gi|27464957|gb|AAN64234.1| DNA polymerase theta short isoform [Mus musculus] Length = 2265 Score = 181 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 89/777 (11%), Positives = 190/777 (24%), Gaps = 216/777 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE---------------------- 62 + V+ A + + +L Sbjct: 1571 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1629 Query: 63 ---NTDVTIVAHNSYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-GE 114 + + ++V ++ VL + + + V S + Sbjct: 1630 KKSDRERSVVT----YDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 1684 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFK 173 ++ + + + + +R + + + + Sbjct: 1685 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 1744 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + E Y + G A + ++ + ++ + L S Sbjct: 1745 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHS-FSF 1803 Query: 234 RCLEKLKTWLFLETGLHL--------EDLTE-------------------TTCQRVLSSN 266 + + LFLE L T +T + +L+ Sbjct: 1804 TSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKL 1863 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCV 323 K L P + R S + + L + + LR + + + TGR + Sbjct: 1864 KGLHPLPGLILEWRR-ISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRITFTE 1922 Query: 324 FPPQNLPRP--------------------------SRSHEELDQIITHLPTSITSDPDPL 357 QN+PR + + H D Sbjct: 1923 PNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRG 1982 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 S +R + G ++ AD + +E R+LA ++ + ++ TG D++ + A Sbjct: 1983 VPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWK 2042 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 + P V D R K + + Y GAK+ + + + +S ++ Sbjct: 2043 MIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKSRYKG 2097 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 +F R +N ++ + +G R+ + + Sbjct: 2098 INHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDN---------------- 2132 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 Y R +NTT Sbjct: 2133 -------------------------------PYHKAHAERQAINTT-------------- 2147 Query: 598 TENIVQAVSRDILAEGMMNATK-------------------------------------- 619 VQ + DI+ +N K Sbjct: 2148 ----VQGSAADIVKIATVNIQKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCP 2203 Query: 620 -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M + LK + + Sbjct: 2204 MRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMECAIK--LSVKLKVKVKIGASWG 2258 >gi|30387615|ref|NP_084253.1| DNA polymerase theta isoform 1 [Mus musculus] gi|29825886|gb|AAL77225.1| DNA polymerase theta [Mus musculus] gi|148665535|gb|EDK97951.1| polymerase (DNA directed), theta, isoform CRA_a [Mus musculus] gi|187953885|gb|AAI38361.1| Polymerase (DNA directed), theta [Mus musculus] gi|187956948|gb|AAI57901.1| Polymerase (DNA directed), theta [Mus musculus] Length = 2544 Score = 181 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 89/777 (11%), Positives = 190/777 (24%), Gaps = 216/777 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE---------------------- 62 + V+ A + + +L Sbjct: 1850 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1908 Query: 63 ---NTDVTIVAHNSYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-GE 114 + + ++V ++ VL + + + V S + Sbjct: 1909 KKSDRERSVVT----YDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 1963 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFK 173 ++ + + + + +R + + + + Sbjct: 1964 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 2023 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + E Y + G A + ++ + ++ + L S Sbjct: 2024 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHS-FSF 2082 Query: 234 RCLEKLKTWLFLETGLHL--------EDLTE-------------------TTCQRVLSSN 266 + + LFLE L T +T + +L+ Sbjct: 2083 TSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKL 2142 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCV 323 K L P + R S + + L + + LR + + + TGR + Sbjct: 2143 KGLHPLPGLILEWRR-ISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRITFTE 2201 Query: 324 FPPQNLPRP--------------------------SRSHEELDQIITHLPTSITSDPDPL 357 QN+PR + + H D Sbjct: 2202 PNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRG 2261 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 S +R + G ++ AD + +E R+LA ++ + ++ TG D++ + A Sbjct: 2262 VPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWK 2321 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 + P V D R K + + Y GAK+ + + + +S ++ Sbjct: 2322 MIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKSRYKG 2376 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 +F R +N ++ + +G R+ + + Sbjct: 2377 INHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDN---------------- 2411 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 Y R +NTT Sbjct: 2412 -------------------------------PYHKAHAERQAINTT-------------- 2426 Query: 598 TENIVQAVSRDILAEGMMNATK-------------------------------------- 619 VQ + DI+ +N K Sbjct: 2427 ----VQGSAADIVKIATVNIQKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCP 2482 Query: 620 -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M + LK + + Sbjct: 2483 MRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMECAIK--LSVKLKVKVKIGASWG 2537 >gi|259502604|ref|ZP_05745506.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] gi|259169419|gb|EEW53914.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] Length = 169 Score = 180 bits (457), Expect = 5e-43, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 6/169 (3%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S +L + G+ +YA+ D ++LF + D PV++ D +P + Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYSTDFGPVKVVDLTQGEKIPPQII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL+N ++ A N+ FER L + W C+ V + + GLP +L+ VG L L Sbjct: 61 EALDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDVGSVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKG 163 QK+ GKEL+ F CK RN P H + W+ F +Y + Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQA 169 >gi|324502441|gb|ADY41075.1| DNA polymerase I [Ascaris suum] Length = 1076 Score = 180 bits (456), Expect = 7e-43, Method: Composition-based stats. Identities = 72/506 (14%), Positives = 133/506 (26%), Gaps = 123/506 (24%) Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 E L + G D H L Q E + L+ E L + ++ Sbjct: 673 LESTELLARLEATGIAFDRQAGHDLLQRTKSEMSSLEAEGRRLASMP-FNFDSPSEIANV 731 Query: 243 LFLETGLHL---------EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 LF+ G+ +T + VL A + + + + L Sbjct: 732 LFVRMGIQPVSGCGGSGAPRRHYSTNKEVLQRLAPKHRIAAIILK-WRKLNTALSSSLQN 790 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L+ A S+GR+ + + TGR QN+ + + Sbjct: 791 LLRACRSNGRIHASF--TTFTGTGRVQSVHPNVQNVQKDALID----------------- 831 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 S VRS +A G LV AD + +E RVLA ++ ++ K F G D + T Sbjct: 832 -------SLSVRSLFVAPPGFVLVSADYSQLELRVLAGLSKDEGLCKLFRNGGDFFQTVT 884 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 R V D Sbjct: 885 DRWNANTSIDVPLD---------------------------------------------R 899 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + +++ ++ +V E Sbjct: 900 QKVKQLCYAIIYGMGAITLGERIGTTKQNAQHLIESFFKEFPKVRSWM---DATLESCRR 956 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 + A+ GR S + + + R+ Sbjct: 957 DACAVTIL-----------------------GRRRPL---KCGESVVQSDRARAERQAI- 989 Query: 594 GGKLTENIVQAVSRDILAEGMMNATK----AGYDIVLTVHDEIVCETPDT-DEFNASMLY 648 + +Q + +I ++ K IV+ VHDE++ E + + Sbjct: 990 -----NSTIQGSASEIFKSALLKLEKNLKDLDARIVMQVHDEVIVELNEACFSTAVERIE 1044 Query: 649 HLMTSNPSWAKGLPLKAEGYESKRYR 674 M + +PL + + Sbjct: 1045 SAMLNALPEFP-VPLSVKISSGTNWG 1069 >gi|330801495|ref|XP_003288762.1| hypothetical protein DICPUDRAFT_34531 [Dictyostelium purpureum] gi|325081196|gb|EGC34721.1| hypothetical protein DICPUDRAFT_34531 [Dictyostelium purpureum] Length = 489 Score = 180 bits (456), Expect = 7e-43, Method: Composition-based stats. Identities = 69/561 (12%), Positives = 163/561 (29%), Gaps = 125/561 (22%) Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 Y + + RE K + E ++ + + G + ++ + ++ + L Sbjct: 2 RYYIQSLHIQREDNKFFNIFLNIEMKILPIFAMMEYVGIGFNEKVSESGKHLIQRKIEYL 61 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-------------VLSS 265 D + L G S + + LF + + ++ ++T ++ VL Sbjct: 62 DYKAHVLLPGKTFSLSSGDNVSEILFTDLKIPPPEIAKSTSRKNRLKKQYYLTNSVVLEQ 121 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM----NSDGRLRGTLQFLGASRTGRWSG 321 P + + + ++ L + + + + TGR + Sbjct: 122 INHYHPLPS-IISEYRVLTHHISHYIDVLGKYLFRSDHYQMDRIYSTIQQTIVPTGRIAM 180 Query: 322 CVFPPQNL--PRPSRSHEELDQIITHLPTSITSDPDPL-----------------QIISD 362 QN+ P + E+D + + S +I+ Sbjct: 181 ENPNLQNISHPIDFKRAPEIDFSQESIKSFNESLDRFEYLSDEHYLSLLQMDKSCDVITV 240 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA--FETGEDLYVTTYARSFNVA 420 +R+ I + G KL+ D +E R+L ++ + ++ D++ + N+ Sbjct: 241 SIRNAFIPANGCKLLSVDYGQLELRILTHLSQDPKLMEMFNCNINIDIFKYVAHQVGNIP 300 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 VT R K + + Y Sbjct: 301 YDSVTDSDRQQAKHLVYGILY--------------------------------------- 321 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 A E + +++ ++++ E + + Q Sbjct: 322 -----GMGIKSIASELHIPIEQARGKLENFKKTYNKLIEYLEMVEENVIQ---------- 366 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 N + GR + ++ + + N ++ R + Sbjct: 367 ----------------NGYIATLFGRVRNFSNIHSCK-IDNNEISKVKRAA------RNS 403 Query: 601 IVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTS 653 I Q + DI M+ ++L +HDEI+ E P+ + + ++ + M + Sbjct: 404 IPQGTAADIAKMAMIKIQDELDKNHFKAQMILQLHDEILFEVPENELYQSAQIIKYSMEN 463 Query: 654 NPSWAKGLPLKAEGYESKRYR 674 + LP+K + Sbjct: 464 VVKLSVSLPIKM--SIGPNWG 482 >gi|297670244|ref|XP_002813286.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Pongo abelii] Length = 2728 Score = 180 bits (456), Expect = 8e-43, Method: Composition-based stats. Identities = 96/778 (12%), Positives = 191/778 (24%), Gaps = 216/778 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74 +D+ V+ A + + + +P L +L D + Sbjct: 2032 CDDILVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 2091 Query: 75 ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117 ++ +L + + + V S L ++ + Sbjct: 2092 ESDQECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 2150 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + EG E + + L + + + Sbjct: 2151 PHELPLLEGMETSQGIQSLGLNVGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 2209 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALA-HTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E Y + G A + I+ + ++ + L S Sbjct: 2210 FRKVEMPSQYCLSLLELNGIGFSTAECYESQKHIMQAKLEAIETQAYQLAGHS-FSFTSS 2268 Query: 237 EKLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKL 269 + + LFLE L ++ + +T + VL+ K L Sbjct: 2269 DDIAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKAL 2328 Query: 270 TPQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 P + R + A+ K+ + R+ Q A+ GR + Sbjct: 2329 HPLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRITFTE 2384 Query: 324 FPPQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDP 356 QN+PR + + D Sbjct: 2385 PNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGCSLNPRCQAQMEERAADR 2444 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 S +R + G ++ AD + +E R+LA ++ ++ ++ TG D++ + A Sbjct: 2445 GMPFSISMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEW 2504 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 + P V D R K + + Y GAK+ + + + +S + Sbjct: 2505 KMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYT 2559 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 F +N +G R+ + + Sbjct: 2560 GINQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD----------------- 2593 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 + YR R +NTT Sbjct: 2594 ------------------------------NNPYRKAHAERQAINTT------------- 2610 Query: 597 LTENIVQAVSRDILAEGMMNATK------------------------------------- 619 VQ + DI+ +N K Sbjct: 2611 -----VQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSQKRKLQGMFC 2665 Query: 620 --AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M S + LK + + Sbjct: 2666 PIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2721 >gi|254253595|ref|ZP_04946912.1| DNA polymerase A [Burkholderia dolosa AUO158] gi|124898240|gb|EAY70083.1| DNA polymerase A [Burkholderia dolosa AUO158] Length = 248 Score = 179 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 56/320 (17%), Positives = 98/320 (30%), Gaps = 88/320 (27%) Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R IA+ G ++V AD + IE R++A ++G+ L+AF GED++ T A F V Sbjct: 6 GRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVT 65 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 P +V DQR I KV+ G++ Sbjct: 66 PLEVNADQRRIAKVIN--------------FGLIYGMS---------------------- 89 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 A A + + ++ V++ + ++ Sbjct: 90 --------AFGLASNLGITRDAAKLYIDRYFTRYPGVAQYMENTRASAKE---------- 131 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 + GR L ++ R Sbjct: 132 ----------------KGYVETVFGRRLWLPEINGGNGPRRQA---AERAAINAP----- 167 Query: 601 IVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTS 653 +Q + D++ M+ K +++ VHDE+V E PD + L +M Sbjct: 168 -MQGTAADLIKLSMIAVDQWLTRDKLASRMIMQVHDELVLEVPDDELPLVREKLPEMMCG 226 Query: 654 NPSWAKGLPLKAEGYESKRY 673 +PL AE + Sbjct: 227 VAK--LKVPLVAEVGAGANW 244 >gi|76880152|dbj|BAE45851.1| DNA polymerase [Nicotiana tabacum] Length = 1152 Score = 179 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 60/408 (14%), Positives = 111/408 (27%), Gaps = 91/408 (22%) Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + L + +GR+ +L + TGR S QN P Sbjct: 821 LCEMCSIDSLISNFILPLQGQDVSGENGRIHCSLNIN--TETGRLSARRPNLQNQP---- 874 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 L+ +R +A++G L+VAD +E R+LA +A Sbjct: 875 ---------------------ALEKDRYKIRQAFVAAQGNSLIVADYGQLELRILAHLAN 913 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L AF+ G D + T + V + + Sbjct: 914 RKSMLDAFKAGGDFHSRTAMNMYTHIREAVENGEV------------------LLEWHPQ 955 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G L + NF + A + + W Sbjct: 956 PGEEKPPVPLLKDAFGSERRKAKMLNFSIAYGKTTIGLARDWKVSVKEAKETVDRWYSDR 1015 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 VS+ + + + GR+ + V Sbjct: 1016 KEVSDWQEQRKFEARE--------------------------FRRVHTLLGRARWFPSVK 1049 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTV 628 N + + R VQ + D+ M+ + G+ ++L V Sbjct: 1050 N---ATGSVKGHIERAAINTP------VQGSAADVAMCAMLEISKNARLEELGWKLLLQV 1100 Query: 629 HDEIVCETPDTDE-FNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673 HDE++ E P+ E +++ M+ + L + +K + Sbjct: 1101 HDEVILEGPEESENEAMAIVVDCMSKPFGGKNILRVDLSVDSKCAKNW 1148 Score = 96.7 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 78/302 (25%), Gaps = 70/302 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVE-LWDCVHD--PVMPQ 55 D E + ID+ + + +I F+ F D D + + Sbjct: 388 ACDTE-VAKIDVKQQTP---VDHGDIICFSIYSGPEADFGDGKSCIWVDVLDGGGKNLLV 443 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------SA 108 ++ + V HN F+ V++ + + T+ +AR + Sbjct: 444 EFAPFFQDPSIRKVWHNYSFDNHVIENY---GFKVSGFHADTMHMARLWDSSRRTSGGYS 500 Query: 109 LKAV--------------GEALKLSS-------QKMEEGKELIARFCKGETHECLYDRNK 147 L+A+ E L K G++ + + + + Sbjct: 501 LEALTGDSTVMRDARPVHAERLFHGEGLFGKISMKTIFGRKKLKKDGTEGKVTVIPSVEE 560 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWY 187 L+ Y D T +++ L+ + Sbjct: 561 LQK-TERELWICYSALDSISTLMLYESLKNKLSKRIWTFDGVRKGSMYEFYERYWRPFGE 619 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG-----LVSSSRCLEKLKTW 242 L + G VD A + ++ E+ + + +L+ Sbjct: 620 LLVQMETEGVLVDRAYLAEIEKVAKAEQQVAANRFRNWAAKYCPDAKYMNVGSDTQLRQL 679 Query: 243 LF 244 F Sbjct: 680 FF 681 >gi|225461738|ref|XP_002283388.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1034 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 60/408 (14%), Positives = 113/408 (27%), Gaps = 91/408 (22%) Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + L E +GR+ +L + TGR S QN P Sbjct: 703 LCEVCSINSLISNFILPLQDGEISGKNGRIHCSLNIN--TETGRLSARRPNLQNQP---- 756 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 L+ +R IA+ G L+VAD +E R+LA +A Sbjct: 757 ---------------------ALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLAN 795 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L AF+ G D + T + V K + + Sbjct: 796 CKSMLNAFKAGGDFHSRTAMNMYPHIREAVEKREV------------------LLEWHPQ 837 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G + L + NF + A + + W ++ Sbjct: 838 PGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARDWKVSVREARETVERWYKER 897 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + + + GR+ + V Sbjct: 898 KEVLAWQEKRKKEATTLK--------------------------YVCTLLGRARSFPSVH 931 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTV 628 + + + R VQ + D+ M+ + G+ ++L V Sbjct: 932 H---ATASQRGHIERAAINTP------VQGSAADVAMCAMLEISRNARLKELGWKLLLQV 982 Query: 629 HDEIVCETP-DTDEFNASMLYHLMTSNPSW--AKGLPLKAEGYESKRY 673 HDE++ E P ++ E +++ M + L + ++ + Sbjct: 983 HDEVILEGPTESAEVAKAIVVECMEKPFDGKNILSVDLAVDAKCAQNW 1030 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 46/341 (13%), Positives = 95/341 (27%), Gaps = 73/341 (21%) Query: 2 ATL--FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DCVHDP- 51 L D E + + +I F+ F + +W D + Sbjct: 271 KHLIHACDTE----VANIDVKRETPVDHGEIICFSIYSGPEADFGNGKSCIWVDVLDGGG 326 Query: 52 -VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP--- 106 + E+ + V HN F+ V++ D+ + + T+ +AR Sbjct: 327 RDLLVEFAPFFEDPSIQKVWHNYSFDNHVIENY---DLKVSGFHADTMHMARLWDSSRRA 383 Query: 107 ---SALKAVGEALK-LSSQKMEEGKELIARFC-------KGETHECLYDRNKPNHR---- 151 +L+A+ K +S M G+ELI + K + + Sbjct: 384 VGGYSLEALTRDSKVMSGAHMSNGEELIGKVSMKTIFGKKKLKKDGTEGKIITIAPVEVL 443 Query: 152 --EAWRLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWYLD 189 E + + Y D T ++++ ++ + L Sbjct: 444 QREDRKPWISYSALDSMSTLKLYESMKNKLLDKEWLLDGARKGCMFDFYQKYWRPFGELL 503 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQEL-----ESLTYGLVSSSRCLEKLKTWLF 244 + G VD A + ++ E + + +L+ LF Sbjct: 504 VQMETEGMLVDRAYLSKVEKVAKAEEQVAANRFRNWASKHCPDAKYMNVGSDTQLRQLLF 563 Query: 245 LETG--------LHLEDLTE-TTCQRVLSSNKKLTPQAIQV 276 L +E + +V+ KK + + Sbjct: 564 GGVANRKDPNECLPMEKTFKIPNVDKVIEEGKKAPTKFRNI 604 >gi|260439053|ref|ZP_05792869.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM 2876] gi|292808509|gb|EFF67714.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM 2876] Length = 239 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 72/288 (25%), Positives = 113/288 (39%), Gaps = 61/288 (21%) Query: 399 LKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +K F+ D+Y + + F+V + R GK+ ELALGY G A + Sbjct: 1 MKVFKENGDIYCASASAMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAIG---- 56 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 A++ + + +WR + Sbjct: 57 ------------------------------------ALDTGLSEDELQPLVDSWRASNPN 80 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVG 574 + + W ++ + + I+ A R L ++LPSGR L Y +G Sbjct: 81 IVQFWWDVDRCVKTAIKQRTATETHGIR------FVYQNGILFIVLPSGRRLCYVKPKIG 134 Query: 575 NNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 N+ + T ++ R +YG K ENIVQA+SRDIL M + IV Sbjct: 135 ENKFGGESVTYEGVGTNKKWGRIESYGPKFVENIVQAISRDILCHSMRTLSH--CFIVGH 192 Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDE++ ETP + A + + P W GL L+A+GYE+ Y+K Sbjct: 193 VHDELIIETPMDADLTA--ICEQIGRTPKWIYGLLLRADGYETAFYKK 238 >gi|255024133|ref|ZP_05296119.1| DNA polymerase I [Listeria monocytogenes FSL J1-208] Length = 240 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 41/317 (12%), Positives = 88/317 (27%), Gaps = 89/317 (28%) Query: 365 RSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 R + G K+ AD + +E RVLA ++ ++ + AF+ D++ T F+V + Sbjct: 1 RQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDE 60 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 V R K + G++ + Sbjct: 61 VDSLMRRQAKAVN--------------FGIVYGISDYGLSQ------------------- 87 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 + + + V E ++ + ++ + I Sbjct: 88 -----------NLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH-- 132 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 R ++ + R +Q Sbjct: 133 ----------------------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQ 161 Query: 604 AVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPS 656 + DI+ + M+ K ++L VHDE++ E P+ + + +M + Sbjct: 162 GSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE 221 Query: 657 WAKGLPLKAEGYESKRY 673 +PLK + + Sbjct: 222 --LSVPLKVDSAFGDTW 236 >gi|255071395|ref|XP_002507779.1| hypothetical protein MICPUN_113588 [Micromonas sp. RCC299] gi|226523054|gb|ACO69037.1| hypothetical protein MICPUN_113588 [Micromonas sp. RCC299] Length = 1974 Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats. Identities = 77/552 (13%), Positives = 148/552 (26%), Gaps = 125/552 (22%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------YGLVSSS 233 E L + G D ++ + + ++++E ++L S Sbjct: 1482 DAEMRLVPALAQMEATGVAFDPSVLCRQMRQANRRLREIEREADALVSKQVPGAEPAFSL 1541 Query: 234 RCLEKLKTWLFLETGLHLE----------DLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + LF L VL++ K + V +R Sbjct: 1542 ASSADVARVLFENLKLPPPPCAVVQCGNGRRRLRANAEVLAALKDQSDLPALVLEHR--- 1598 Query: 284 SRSA--VLKLNTLVEAM-------------NSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + V + +VE RLRG + + TGR + Q Sbjct: 1599 -TLSRCVAMADEMVELALGGARRDEGNSSRGKITRLRGAIHQTN-TETGRLAMEEPNLQT 1656 Query: 329 LPRP--------SRSHEELDQIITHLPTSITSDPDPLQIISDC----VRSCVIASEGKKL 376 +P+P + T +P P + VR+ +A G L Sbjct: 1657 VPKPRTFRMADAYDGRPGIIAPEGSAKAHKTREPSPGTEVGSEETLSVRNAFVAPPGAVL 1716 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY--------ARSFNVAPAQVTKDQ 428 + AD +E RV+A M+G++ ++AF +R V +V+ Sbjct: 1717 LSADYRQLELRVMAHMSGDEGLVRAFNHEGAPPHHPDADPFRFLASRWRGVEVGKVSDAD 1776 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 RA+ K + + Y G Sbjct: 1777 RAVAKQLAYGVLYGSGPA------------------------------------------ 1794 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 A E + +A++ V +L + + I +RR + Sbjct: 1795 --RFAQEMGVTESEARVQIEAFKASVPGVERWRKKLIETASRASPPSVETICGRRRILSS 1852 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + + R + R + Q + D Sbjct: 1853 LAPDAALTATGCED-AKRRFRLDRSADER------------------RAVNTACQGSAAD 1893 Query: 609 ILAEGMMNA----TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNP-SWAKGLP 662 ++ M+ + VL +HDE++ E + A+ +M + +P Sbjct: 1894 VVKRAMIAVFDELDPSLATPVLQIHDELLFEVDASRVVEAARAVRAIMERAGDEFGFTVP 1953 Query: 663 LKAEGYESKRYR 674 L + + Sbjct: 1954 LPVKVSAGANWG 1965 >gi|119879523|ref|XP_615375.3| PREDICTED: DNA polymerase theta [Bos taurus] gi|297470916|ref|XP_002684835.1| PREDICTED: polymerase (DNA directed), theta-like [Bos taurus] gi|296491393|gb|DAA33456.1| polymerase (DNA directed), theta-like [Bos taurus] Length = 2593 Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats. Identities = 94/778 (12%), Positives = 192/778 (24%), Gaps = 217/778 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHN---- 72 +D+ ++ A + + + +P L +L D + Sbjct: 1898 CDDILLVGLAVCWGGKDAYYFSLQKEQKHSEISASLIPPSLDPSLTVKDRLRHLQSCFHK 1957 Query: 73 --------SYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSA----LKAVGEAL 116 ++ +L + + + V S V L Sbjct: 1958 ESDKERSVIIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSKEPTLHSIVSHFL 2016 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 +EE + G + E+ +F + + + + Sbjct: 2017 PHELPLLEEIETGQGIQSLGLNVSTTHSGRYRASVESILIFNSMNQLNSL--LKKENLQD 2074 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E Y + G A + I+ + ++ + L S Sbjct: 2075 VFYKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIEMQAYQLAGHS-FSFTSS 2133 Query: 237 EKLKTWLFLETGLHL--------EDLT-----------------E--TTCQRVLSSNKKL 269 + + LFLE L T + +T + VL+ + L Sbjct: 2134 DDIAEVLFLELKLPPNGEGKNQGIKKTLGSTRRGNDNGRKLRLGKQFSTSKGVLNKLRAL 2193 Query: 270 TPQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 P + R + A+ K+ + R+ Q A+ GR + Sbjct: 2194 HPLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRITFIE 2249 Query: 324 FPPQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDP 356 QN+PR ++ D Sbjct: 2250 PNIQNVPRDFEIKMPAVVEESPPSQALGKGLLPMGRGGRKKDCAMNAGRQTKVEERASDR 2309 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 S +R + G ++ AD + +E R+LA ++ ++ ++ TG D++ + A Sbjct: 2310 GMPFSVSMRHAFVPFTGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEW 2369 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 + P V + R K + + Y GAK+ + + + +S + Sbjct: 2370 KMIEPESVGDNLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYT 2424 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 +F R +N +G R+ + + Sbjct: 2425 GISHFMRETVKNCKRDGFVQTILGR---------RRYLPGIKD----------------- 2458 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 + Y R +NT Sbjct: 2459 ------------------------------NNPYHKAHAERQAINTR------------- 2475 Query: 597 LTENIVQAVSRDILAEGMMNATK------------------------------------- 619 VQ + DI+ +N K Sbjct: 2476 -----VQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGLLQSERTGLLPKKKLQGMFC 2530 Query: 620 --AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M S + L+ + + Sbjct: 2531 PIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAIK--LSVKLRVKVRIGASWG 2586 >gi|300176838|emb|CBK25407.2| unnamed protein product [Blastocystis hominis] Length = 627 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 59/393 (15%), Positives = 110/393 (27%), Gaps = 89/393 (22%) Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L +++ R+ +L + TGR S QN P Sbjct: 313 NTFILPLQSVADAEQRVHCSLNLN--TETGRLSSRNPNLQNQP----------------- 353 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 L+ +R +A G L+V+D +E RVLA M + ++AF G D Sbjct: 354 --------ALEKDVYFIRKAFMAKPGNILLVSDYGQLELRVLAHMTKCKAMIEAFRLGGD 405 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + T ++ + K + S+ G L Sbjct: 406 FHSRTALSMYDYIKEDIAKGTC------------------LLEWDSSKG--EPPAPLLKH 445 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 ++ NF + + + V W ++ V Q Sbjct: 446 KYASERRQAKILNFSLAYGKTAHGLQKDFGVSLEEAKEVLAKWYKERPEVKRWQELTIQT 505 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 ++T GR D+ + + Sbjct: 506 AKET--------------------------GFTRTLMGRYRPLPDINSKNKWKEGH---A 536 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDE 641 R +Q + DI+ M+ K G++++L +HDE++ E P + Sbjct: 537 CRAAINTP------IQGGAADIVMMAMLKIEKDERLRRLGFEMLLQIHDEVILEGPIENV 590 Query: 642 FNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 A L M + + L + + + Sbjct: 591 AEAKKCLVEDMMHPFARPLLVDLVVDCNAAPSW 623 >gi|116515191|ref|YP_802820.1| 5'-3' exonuclease domain-containing protein [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257045|gb|ABJ90727.1| 5'-3' exonuclease domain of DNA polymerase I [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 886 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 78/630 (12%), Positives = 184/630 (29%), Gaps = 139/630 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 L+ LEN + N + + N+ T ++ Sbjct: 379 LRPILENNKYYKIGKNLKNVFHIFQEY-NILFRGIH-FDTTII-------------NYYY 423 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 KL+ +K ++ + LI ++ K + + + +E+ Y K+ E Sbjct: 424 KLNYKKNKKYQNLIYKYKKNKKEKSFKRKFIIM-QESLISLKIYFLF---KKNIKKKKRE 479 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + L + I + G + + + K ++ + Sbjct: 480 NFQLIDMSLLPILAEIENNGVLI-KKKILKKQKKNHEKTLKKLKKKIFKITKEKFNINSS 538 Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L+ LF + L T+ +T + VL K+ + R+ + L Sbjct: 539 KQLQNILFKKFNLPKIYKTKLGNISTNEIVLKKLSKIHILPKIILQFRL-IKKIINTYLR 597 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L++++N+ T + TGR S QN+P ++ +L Sbjct: 598 NLIKSINNKTNRIHTTYNQINTSTGRLSSKNPNLQNIPIKTKIGRKL------------- 644 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 R I + L+ AD + IE R++A + ++ +K +D++++T Sbjct: 645 ------------RIAFITKKKWLLLTADYSHIELRIIAHYSKDKNLIKDLLKNKDIHIST 692 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 + FN + Sbjct: 693 ASHIFNKPLEK--------------------------------------------IKKYH 708 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 NF + + + + + + K++++ ++ ++ Sbjct: 709 RNIAKTINFSILYGISPFGLSKKLNISIKKSKNLIYRYFLKYNKIKRFIKNTYKTAKK-- 766 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 + R L ++ + YL + ++ Sbjct: 767 ------------------------RGYIKTLFKRKLYIPNINSKNIYLKNSAKRF----- 797 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCETPDTDEFNAS 645 ++Q + DI+ + M+ I++ +HDE++ E + + Sbjct: 798 ----CINLMIQNTASDIIKKSMITLHHLFKKKFPKDIKIIMQIHDELIFEIKEKKKDKII 853 Query: 646 M-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674 + +M +N +PL K ++ Sbjct: 854 DVIKKIMENNTKLI--IPLYITTKIGKNWK 881 >gi|228941086|ref|ZP_04103643.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974018|ref|ZP_04134592.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980606|ref|ZP_04140915.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407] gi|228779167|gb|EEM27425.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407] gi|228785744|gb|EEM33749.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818629|gb|EEM64697.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939596|gb|AEA15492.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43] Length = 808 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 91/761 (11%), Positives = 188/761 (24%), Gaps = 211/761 (27%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---MPQVLKEAL-ENTDVTIVAH 71 + + + V+ + V D + +L E L +N V +A Sbjct: 143 ICTVSLSAAVHESRVVPISHKV--GQVFEPSMDRDEARKLVLDLLDEYLFKNEKVLKIAV 200 Query: 72 NSYFERTVLKACFNLDIPIHRWICTLVLARS----------NGLPSALKAVGEALKLSSQ 121 N FE + + L++ P K + Sbjct: 201 NLSFETKYAAKYGKYIL--GKVADPLIM-WVRCLQIAAPQKINNPK--KPTSGWGLKPAT 255 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR------- 174 K G + + ++ + + Y D + ++ Sbjct: 256 KEIFGVTMNDFSALLKKYKVDF---FDEIDASKGEGLLYSAEDADYALQHYEYWSQIASQ 312 Query: 175 ---LEPLSS-KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E E + + G D LA Q ++ + + + ++ + Sbjct: 313 IPQYEEWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQVAKETF 372 Query: 231 S------SSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNK-------------- 267 + S ++K+ +F + + + Q L Sbjct: 373 NVDINTGKSGKTNEVKSLMFDYLKIPVAKYGKTGASLDQEALIDMAFMLENKLNDIDEEK 432 Query: 268 ----------------------------------KLTPQAIQVFNNRMRASRSAVLKLNT 293 + P Q + + Sbjct: 433 YLSIPLPENWEIIDPDKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQ-KYTTL 491 Query: 294 LVEAMNSDGRL------RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 L + + R + + TGR + QN+PRP + Sbjct: 492 LSSHIVGREKYLNFMSGRIHAGYSPFTETGRLNSFNPNGQNVPRPDNDEFK--------- 542 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R+ + GK L D +G E R++AW +G++ + F TG D Sbjct: 543 ----------------IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGD 586 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T + ++ K +R K + Y G A Q Sbjct: 587 MHRRTASVMTGKPEDEIVKKERTDAKAGNFGISYGGTEHALQ------------------ 628 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + C ++ A + + R+ E ++ Sbjct: 629 --------------------FTFKTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLE 668 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + + G + + + Sbjct: 669 ARE--------------------------QGYVQTIYGYMRLLPGINSAN---RRDRGSA 699 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----------GYDIVLTVHDEIVCET 636 R+ VQ + DI+ + ++ D++ +HDEI+ E Sbjct: 700 ERQAANTP------VQGSAADIMKKVQNEIYESIGKQEGVLAHGSADMIAQIHDEIIFEI 753 Query: 637 PDTDEFNA---SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 D E + +M P +P++AEG R+ Sbjct: 754 DDDPEIVVAAEKQIKQVMEQPPVPGFPVPIEAEGSVGYRWG 794 >gi|15838882|ref|NP_299570.1| hypothetical protein XF2291 [Xylella fastidiosa 9a5c] gi|9107455|gb|AAF85090.1|AE004041_2 phage-related protein [Xylella fastidiosa 9a5c] Length = 252 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 106/258 (41%), Positives = 134/258 (51%), Gaps = 13/258 (5%) Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 +TK+QR IGKV ELALGY GG AF A+ ++L A P ++A Sbjct: 1 MTKEQRQIGKVQELALGYGGGVGAFAAFAALYHIDLEAMAAQ--AVFPPLLLQEATELLE 58 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 W + NH AC+ K+AWR H ++ W L A I + + Sbjct: 59 WTKANHRPTFDLSDRAWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETT----- 113 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKL 597 + ++ + L L LPSGR L Y D SY+ T TR+ TR TYGGKL Sbjct: 114 HTCCGITVQYRRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKL 173 Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657 ENI QAVSRD+LA M AGY IVLTVHDEI+ E D FNA+ L LM + P W Sbjct: 174 VENITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPW 233 Query: 658 AKGLPLKAEGYESKRYRK 675 A+GLPL AEG+++ RYRK Sbjct: 234 AEGLPLAAEGFDTYRYRK 251 >gi|332642872|gb|AEE76393.1| polymerase gamma 1 [Arabidopsis thaliana] Length = 1049 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 60/408 (14%), Positives = 109/408 (26%), Gaps = 93/408 (22%) Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + L DGR+ +L + TGR S QN P Sbjct: 720 LCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQP---- 773 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 L+ +R IAS G L+VAD +E R+LA +A Sbjct: 774 ---------------------ALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLAS 812 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + +AF G D + T + V + + Sbjct: 813 CESMKEAFIAGGDFHSRTAMNMYPHIREAVENGEV------------------LLEWHPQ 854 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G L ++ NF + + + + W Sbjct: 855 PGQEKPPVPLLKDAFASERRKAKMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDR 914 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + ++ I+ G + GR+ + + Sbjct: 915 QEVRKWQ---ELRKKEAIQKGYVLTLL-----------------------GRARKFPEYR 948 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTV 628 + + R VQ + D+ M+ + G+ ++L V Sbjct: 949 S-----RAQKNHIERAAINTP------VQGSAADVAMCAMLEISNNQRLKELGWKLLLQV 997 Query: 629 HDEIVCETPDTDEFNASML-YHLMTSNP--SWAKGLPLKAEGYESKRY 673 HDE++ E P NA + + M+ + L + ++ + Sbjct: 998 HDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCAQNW 1045 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 49/343 (14%), Positives = 96/343 (27%), Gaps = 76/343 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DC--VHDPVMPQ 55 D E S ID+ + +I F+ F D +W D + + Sbjct: 285 ACDTE-VSRIDVKTETP---VDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILA 340 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------SA 108 K E++ + V HN F+ +++ I + + T+ +AR + Sbjct: 341 EFKPFFEDSSIKKVWHNYSFDNHIIRNY---GIKLSGFHGDTMHMARLWDSSRRISGGYS 397 Query: 109 LKAV---------------GEALKLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHRE 152 L+A+ E S K GK +L +G+ + E Sbjct: 398 LEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQM--E 455 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLS----------------------SKEQELWYLDQ 190 + Y D T ++++ ++ Q L Sbjct: 456 DREAWISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLA 515 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQEL-----ESLTYGLVSSSRCLEKLKTWLF- 244 + G VD + + E+ + + +L+ F Sbjct: 516 KMESEGMLVDRDYLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFG 575 Query: 245 ------LETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNR 280 + L E L + +V+ KK + + +R Sbjct: 576 GISNSCNDEDLPYEKLFKVPNVDKVIEEGKKRATKFRNIKLHR 618 >gi|42565057|ref|NP_188690.3| POLGAMMA1 (polymerase gamma 1); 3'-5' exonuclease/ DNA binding / DNA-directed DNA polymerase/ nucleic acid binding [Arabidopsis thaliana] gi|30313818|gb|AAO34128.1| PolI-like DNA polymerase [Arabidopsis thaliana] gi|71013474|dbj|BAE10874.1| PolI-like B DNA polymerase [Arabidopsis thaliana] gi|110741933|dbj|BAE98907.1| putative DNA polymerase [Arabidopsis thaliana] gi|332642871|gb|AEE76392.1| polymerase gamma 1 [Arabidopsis thaliana] Length = 1034 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 60/408 (14%), Positives = 109/408 (26%), Gaps = 93/408 (22%) Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + L DGR+ +L + TGR S QN P Sbjct: 705 LCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQP---- 758 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 L+ +R IAS G L+VAD +E R+LA +A Sbjct: 759 ---------------------ALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLAS 797 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + +AF G D + T + V + + Sbjct: 798 CESMKEAFIAGGDFHSRTAMNMYPHIREAVENGEV------------------LLEWHPQ 839 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G L ++ NF + + + + W Sbjct: 840 PGQEKPPVPLLKDAFASERRKAKMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDR 899 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + ++ I+ G + GR+ + + Sbjct: 900 QEVRKWQ---ELRKKEAIQKGYVLTLL-----------------------GRARKFPEYR 933 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTV 628 + + R VQ + D+ M+ + G+ ++L V Sbjct: 934 S-----RAQKNHIERAAINTP------VQGSAADVAMCAMLEISNNQRLKELGWKLLLQV 982 Query: 629 HDEIVCETPDTDEFNASML-YHLMTSNP--SWAKGLPLKAEGYESKRY 673 HDE++ E P NA + + M+ + L + ++ + Sbjct: 983 HDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCAQNW 1030 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 49/343 (14%), Positives = 96/343 (27%), Gaps = 76/343 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DC--VHDPVMPQ 55 D E S ID+ + +I F+ F D +W D + + Sbjct: 270 ACDTE-VSRIDVKTETP---VDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILA 325 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------SA 108 K E++ + V HN F+ +++ I + + T+ +AR + Sbjct: 326 EFKPFFEDSSIKKVWHNYSFDNHIIRNY---GIKLSGFHGDTMHMARLWDSSRRISGGYS 382 Query: 109 LKAV---------------GEALKLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHRE 152 L+A+ E S K GK +L +G+ + E Sbjct: 383 LEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQM--E 440 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLS----------------------SKEQELWYLDQ 190 + Y D T ++++ ++ Q L Sbjct: 441 DREAWISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLA 500 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQEL-----ESLTYGLVSSSRCLEKLKTWLF- 244 + G VD + + E+ + + +L+ F Sbjct: 501 KMESEGMLVDRDYLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFG 560 Query: 245 ------LETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNR 280 + L E L + +V+ KK + + +R Sbjct: 561 GISNSCNDEDLPYEKLFKVPNVDKVIEEGKKRATKFRNIKLHR 603 >gi|218200555|gb|EEC82982.1| hypothetical protein OsI_28013 [Oryza sativa Indica Group] Length = 1028 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 91/773 (11%), Positives = 202/773 (26%), Gaps = 126/773 (16%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFG---------FDDHPVELWD--CVHDPVM 53 D E + ID+ + VI F+ F + +W + Sbjct: 274 ACDTE-VANIDVKEETP---VGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGGRDV 329 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------ 106 E+ + V HN F+ V++ C I + + T+ LAR Sbjct: 330 LMEFAPFFEDPSIKKVWHNYSFDNHVIENC---GIKVAGFHADTMHLARLWDSSRRADGG 386 Query: 107 SALKAVGEALKLSSQKMEEGKELIA------RFCKGETHECLYDRNKPNHR------EAW 154 +L+ + ++ + +++ + K + E Sbjct: 387 YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKKVRKNGSEGKTISIEPVEKLQREDR 446 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWYLDQTIND 194 L+ Y D T ++++ L+ + L + Sbjct: 447 ELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKMET 506 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF----- 244 G VD A + + VER + + +++ F Sbjct: 507 EGMLVDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIKN 566 Query: 245 -LETGLHLE-DLT-------------ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + G T + T + + + +++ L Sbjct: 567 RNKPGETWPQSKTFKVPNDESIATEGKKTSKSRTIKLFTIVEDLKLFTTEGKKTTKTGWL 626 Query: 290 KL--NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 K+ + L G S P Q++ S + Sbjct: 627 KVRGDVLWSLAGKIPTDHIYKIDDGQEFDEDGSSVELPEQDIENTSPYGTAYEAFGGGKK 686 Query: 348 TSITSDP----DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 I + +I +G + + I + + + Sbjct: 687 GREACHAIAALCEAFSIDKLISGFIIPLQGDR-ISCKEGRIHCSLNINTETGRLSARTPN 745 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN--- 460 + A + + +L L + M + Sbjct: 746 LQNQPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHS 805 Query: 461 --TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER-----VKKAWRQK 513 A EE + + ++ P + G + A+ + Sbjct: 806 RTAMNMYQHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDTFGAERRKAKMLNFSIAYGKT 865 Query: 514 HSRVSELWNELHQAFEQTIE----NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 +S+ WN + T++ + K + A +++ L K + + GRS Sbjct: 866 AVGLSQDWNVEVREARDTLKLWYRDRKEVSAWQKKQKALALEKCE-----VYTLLGRSRQ 920 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYD 623 + ++ + R Q + D+ M+ + G+ Sbjct: 921 FPNMTHAGPGQKGHV---ERAAINAPG------QGSAADVAMCAMLEIERNARLKELGWR 971 Query: 624 IVLTVHDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P ++ E S++ M+ + + L + +K + Sbjct: 972 LLLQVHDEVILEGPTESAEEAKSIVVECMSKPFYGTNILKVDLAVDAKYAKSW 1024 >gi|297847428|ref|XP_002891595.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp. lyrata] gi|297337437|gb|EFH67854.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp. lyrata] Length = 1047 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 63/399 (15%), Positives = 111/399 (27%), Gaps = 93/399 (23%) Query: 286 SAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + L DGR+ +L + TGR S QN P Sbjct: 727 LISNFILPLQGSNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQP------------- 771 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 L+ +R +AS G LVVAD +E R+LA + G + ++AF+ Sbjct: 772 ------------ALEKDRYKIRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFK 819 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G D + T + V Q + G + Sbjct: 820 AGGDFHSRTAMNMYPHIREAVENGQV------------------ILEWHPQPGEDKPPVP 861 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 L + NF + + + + K W V + Sbjct: 862 LLKDAFGSERRKAKMLNFSIAYGKTAIGLSRDWKVSVEEAQDTVKLWYNDRQEVRKWQ-- 919 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + ++ IE+G GRS + + Sbjct: 920 -ERRKKEAIEDGYVRTLL-----------------------GRSRRFPRYKS-----RAQ 950 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETP 637 + R VQ + D+ M+ + K G+ ++L +HDE++ E P Sbjct: 951 KNHIQRAAINTP------VQGSAADVAMCAMLEISTNQQLKKLGWRLLLQIHDEVILEGP 1004 Query: 638 DTDEFNASML-YHLMTSNP--SWAKGLPLKAEGYESKRY 673 A + M+ + L + ++ + Sbjct: 1005 IESAEIAKDIVVDCMSKPFNGRNILSVDLSVDAKCAQNW 1043 Score = 109 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 44/354 (12%), Positives = 96/354 (27%), Gaps = 72/354 (20%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DC--VHDPVMPQ 55 D E + + + +I F+ F +W D + + Sbjct: 287 SCDTE----VSGIEVKEETPVDHGELICFSIYCGPEADFGYGKSCIWVDVLGENGREVLA 342 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL------PSAL 109 K E++ + V HN F+ +++ ++I T+ +AR +L Sbjct: 343 EFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFH-ADTMHMARLWDSARRIEGGYSL 400 Query: 110 KAV---------------GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 +A+ + L S K GK + + + + E Sbjct: 401 EALTSDPKVLGGTQTKEEADFLGKISMKTIFGKRKLKKDGSEGKMVVIPPVEELQR-EDR 459 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSK----------------------EQELWYLDQTI 192 + Y D T ++++ + + L + Sbjct: 460 EAWISYSALDAISTLKLYESMTKKLQMMDWRLDGKPVLERTMLDFYHEFWRPFGELLVKM 519 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF--- 244 G VD + ++ E+ + + +L+ F Sbjct: 520 EAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFFGGI 579 Query: 245 ----LETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 L +E L + +V+ KK + + +R+ S + L Sbjct: 580 SNSVNGEVLPVEKLFKIPNIDKVIEVGKKTATKFRNIKLHRISDSPLSTENLTA 633 >gi|168066821|ref|XP_001785330.1| predicted protein [Physcomitrella patens subsp. patens] gi|162663085|gb|EDQ49871.1| predicted protein [Physcomitrella patens subsp. patens] Length = 792 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 64/409 (15%), Positives = 115/409 (28%), Gaps = 95/409 (23%) Query: 277 FNNRMRASRSAVLKLNTLVE---AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + + L SDGR+ +L + TGR S QN P Sbjct: 463 LCEVASINTLLSNFIEPLQGNDIKSASDGRVHCSLNIN--TETGRLSARRPSLQNQP--- 517 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 L+ +R +A+ GK LVVAD +E R+LA +A Sbjct: 518 ----------------------ALEKDRYKIRQAFVAAPGKSLVVADYGQLELRLLAHLA 555 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + AF+ G D + T + V K+ + + Sbjct: 556 DCKSMKAAFKAGGDFHSRTAMNMYPHVREAVEKE---------------------RVLLE 594 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L + NF + A + + W Sbjct: 595 WESHGKPPAPLLKDIFGSERRKAKMLNFSIAYGKTAMGLAKDWKVKVDEAKATVDLWYSD 654 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 V E Q +L + GR+ D+ Sbjct: 655 RPEVLAWQKERKQEAHT--------------------------SLRVHTLLGRARHLPDI 688 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627 ++ + L + + R VQ + D+ M+ + G+ ++L Sbjct: 689 NSSNALLRSH---MERAAINTP------VQGSAADVAMCAMLEINRNSKLRELGWKLLLQ 739 Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673 VHDE++ E P ++ + ++ M + L +G ++ + Sbjct: 740 VHDEVILEGPSESAQEAKELVIKSMMYPFNGENFLDVELVVDGDYAESW 788 Score = 98.6 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 83/301 (27%), Gaps = 67/301 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELWD--CVHDPVMPQV 56 D E + ID+ K + F+ F + LW + +V Sbjct: 26 ACDTE-VAEIDVKKESP---VGHGRMTCFSIYCGPSANFGNGKNRLWVDVLDGGDGILEV 81 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-------PSAL 109 + E+ + V HN F++ +L + P + T+ LAR + +L Sbjct: 82 FRRYFEDPSIKKVWHNYSFDKHILSRH-GIH-PQGFYADTMHLARLHDSARRGAKGGYSL 139 Query: 110 KAVGE-------ALKLSSQKM-------EEGKELIARFCKGETHECLYDRNKPNHR---- 151 + + L +++ + KEL + + + P Sbjct: 140 EVLSADEKVMDGYLGHLTEEDDITLVGKKSMKELFGKANLKKDGSPGKIKTIPPVDELQR 199 Query: 152 --EAWRLFGEYCKGDVTVTREIFKRLEPLS---------------------SKEQELWYL 188 E + Y D T +F L+ + + Sbjct: 200 DGELRDAWIHYSTFDTVCTWRLFVSLQHKLSNTPWNVVDLKEKGSMYDFYEKYWRPFGEV 259 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL-----VSSSRCLEKLKTWL 243 + G VD T+ ++ ++ + + +++ +L Sbjct: 260 LVQMEADGMLVDCDHLATVEKVARAQQEISVSRFRKWAAKYCPDAAMMNVGSDAQIRQFL 319 Query: 244 F 244 F Sbjct: 320 F 320 >gi|11994141|dbj|BAB01162.1| unnamed protein product [Arabidopsis thaliana] Length = 1088 Score = 177 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 60/408 (14%), Positives = 109/408 (26%), Gaps = 93/408 (22%) Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + L DGR+ +L + TGR S QN P Sbjct: 670 LCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQP---- 723 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 L+ +R IAS G L+VAD +E R+LA +A Sbjct: 724 ---------------------ALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLAS 762 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + +AF G D + T + V + + Sbjct: 763 CESMKEAFIAGGDFHSRTAMNMYPHIREAVENGEV------------------LLEWHPQ 804 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G L ++ NF + + + + W Sbjct: 805 PGQEKPPVPLLKDAFASERRKAKMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDR 864 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + ++ I+ G + GR+ + + Sbjct: 865 QEVRKWQ---ELRKKEAIQKGYVLTLL-----------------------GRARKFPEYR 898 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTV 628 + + R VQ + D+ M+ + G+ ++L V Sbjct: 899 S-----RAQKNHIERAAINTP------VQGSAADVAMCAMLEISNNQRLKELGWKLLLQV 947 Query: 629 HDEIVCETPDTDEFNASML-YHLMTSNP--SWAKGLPLKAEGYESKRY 673 HDE++ E P NA + + M+ + L + ++ + Sbjct: 948 HDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCAQNW 995 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 49/343 (14%), Positives = 96/343 (27%), Gaps = 76/343 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DC--VHDPVMPQ 55 D E S ID+ + +I F+ F D +W D + + Sbjct: 235 ACDTE-VSRIDVKTETP---VDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILA 290 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------SA 108 K E++ + V HN F+ +++ I + + T+ +AR + Sbjct: 291 EFKPFFEDSSIKKVWHNYSFDNHIIRNY---GIKLSGFHGDTMHMARLWDSSRRISGGYS 347 Query: 109 LKAV---------------GEALKLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHRE 152 L+A+ E S K GK +L +G+ + E Sbjct: 348 LEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQM--E 405 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLS----------------------SKEQELWYLDQ 190 + Y D T ++++ ++ Q L Sbjct: 406 DREAWISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLA 465 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQEL-----ESLTYGLVSSSRCLEKLKTWLF- 244 + G VD + + E+ + + +L+ F Sbjct: 466 KMESEGMLVDRDYLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFG 525 Query: 245 ------LETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNR 280 + L E L + +V+ KK + + +R Sbjct: 526 GISNSCNDEDLPYEKLFKVPNVDKVIEEGKKRATKFRNIKLHR 568 >gi|18087568|gb|AAL58915.1|AF462826_1 At1g50840/F8A12_8 [Arabidopsis thaliana] gi|20259545|gb|AAM13892.1| putative DNA polymerase A family protein [Arabidopsis thaliana] gi|71013470|dbj|BAE10873.1| PolI-like A DNA polymerase [Arabidopsis thaliana] Length = 1049 Score = 177 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 62/408 (15%), Positives = 110/408 (26%), Gaps = 93/408 (22%) Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + L DGR+ +L + TGR S QN P Sbjct: 720 LCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQP---- 773 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 L+ +R +AS G LVVAD +E R+LA + G Sbjct: 774 ---------------------ALEKDRYKIRKAFVASPGNTLVVADYGQLELRILAHLTG 812 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + ++AF+ G D + T + V Q + Sbjct: 813 CKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQV------------------ILEWHPE 854 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G + L + NF + + + + W Sbjct: 855 PGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDR 914 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + ++ IE+G + GRS + Sbjct: 915 QEVRKWQ---EMRKKEAIEDGYVLTLL-----------------------GRSRRFPASK 948 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628 + + R VQ + D+ M+ + K G+ ++L + Sbjct: 949 S-----RAQRNHIQRAAINTP------VQGSAADVAMCAMLEISINQQLKKLGWRLLLQI 997 Query: 629 HDEIVCETPDTDEFNASML-YHLMTSNP--SWAKGLPLKAEGYESKRY 673 HDE++ E P A + M+ + L + ++ + Sbjct: 998 HDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDLSVDAKCAQNW 1045 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 44/353 (12%), Positives = 97/353 (27%), Gaps = 71/353 (20%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DC--VHDPVMPQ 55 D E + + + +I F+ F + +W D + + Sbjct: 291 SCDTE----VSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWVDVLGENGREVLA 346 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL------PSAL 109 K E++ + V HN F+ +++ ++I T+ +AR +L Sbjct: 347 EFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFH-ADTMHMARLWDSARRIKGGYSL 404 Query: 110 KAV---------------GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 +A+ E L S K GK + + + + E Sbjct: 405 EALTSDPKVLGGTQTKEEAEFLGKISMKTIFGKRKLKKDGSEGKIVVIPPVEELQR-EDR 463 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLS----------------------SKEQELWYLDQTI 192 + Y D T ++++ + + L + Sbjct: 464 EAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTMLDFYHEFWRPFGELLVKM 523 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF--- 244 G VD + ++ E+ + + +L+ F Sbjct: 524 EAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFFGGI 583 Query: 245 ---LETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 + L +E L + +V+ KK + + +R+ S + Sbjct: 584 SNSHDEVLPVEKLFKVPNIDKVIEEGKKTPTKFRNIKLHRISDSPLSTENFTA 636 >gi|22330154|ref|NP_175498.2| POLGAMMA2 (polymerase gamma 2); DNA binding / DNA-directed DNA polymerase [Arabidopsis thaliana] gi|332194474|gb|AEE32595.1| polymerase gamma 2 [Arabidopsis thaliana] Length = 1050 Score = 177 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 62/408 (15%), Positives = 110/408 (26%), Gaps = 93/408 (22%) Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + L DGR+ +L + TGR S QN P Sbjct: 721 LCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQP---- 774 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 L+ +R +AS G LVVAD +E R+LA + G Sbjct: 775 ---------------------ALEKDRYKIRKAFVASPGNTLVVADYGQLELRILAHLTG 813 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + ++AF+ G D + T + V Q + Sbjct: 814 CKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQV------------------ILEWHPE 855 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G + L + NF + + + + W Sbjct: 856 PGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDR 915 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + ++ IE+G + GRS + Sbjct: 916 QEVRKWQ---EMRKKEAIEDGYVLTLL-----------------------GRSRRFPASK 949 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628 + + R VQ + D+ M+ + K G+ ++L + Sbjct: 950 S-----RAQRNHIQRAAINTP------VQGSAADVAMCAMLEISINQQLKKLGWRLLLQI 998 Query: 629 HDEIVCETPDTDEFNASML-YHLMTSNP--SWAKGLPLKAEGYESKRY 673 HDE++ E P A + M+ + L + ++ + Sbjct: 999 HDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDLSVDAKCAQNW 1046 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 44/353 (12%), Positives = 97/353 (27%), Gaps = 71/353 (20%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DC--VHDPVMPQ 55 D E + + + +I F+ F + +W D + + Sbjct: 292 SCDTE----VSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWVDVLGENGREVLA 347 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL------PSAL 109 K E++ + V HN F+ +++ ++I T+ +AR +L Sbjct: 348 EFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFH-ADTMHMARLWDSARRIKGGYSL 405 Query: 110 KAV---------------GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 +A+ E L S K GK + + + + E Sbjct: 406 EALTSDPKVLGGTQTKEEAEFLGKISMKTIFGKRKLKKDGSEGKIVVIPPVEELQR-EDR 464 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLS----------------------SKEQELWYLDQTI 192 + Y D T ++++ + + L + Sbjct: 465 EAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTMLDFYHEFWRPFGELLVKM 524 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF--- 244 G VD + ++ E+ + + +L+ F Sbjct: 525 EAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFFGGI 584 Query: 245 ---LETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 + L +E L + +V+ KK + + +R+ S + Sbjct: 585 SNSHDEVLPVEKLFKVPNIDKVIEEGKKTPTKFRNIKLHRISDSPLSTENFTA 637 >gi|330802475|ref|XP_003289242.1| hypothetical protein DICPUDRAFT_153597 [Dictyostelium purpureum] gi|325080687|gb|EGC34232.1| hypothetical protein DICPUDRAFT_153597 [Dictyostelium purpureum] Length = 1200 Score = 177 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 83/694 (11%), Positives = 189/694 (27%), Gaps = 167/694 (24%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFE-RTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109 + + E LEN + +++N + + + + A Sbjct: 556 EEKLKFMVEILENGLIKKISYNCS-DGYKPFIKQYPY-MKPINSFDIKIAAWLLNSDGGN 613 Query: 110 KAVGEALKLSSQKMEEGKEL--IARFCKGETHECLYDRNKPNHREAWRLFGEYCK--GDV 165 K E K + I+ + + E + Y D+ Sbjct: 614 NGYSFEKVQEYGKDESIKTIQNISNRNIMQNQSEKIKKLINEENEFSKENTNYGSFSQDI 673 Query: 166 TVTREIFKRLEPLSSKEQELW---------YLDQTINDRGYCVDVALAHTLNQIVDVERT 216 + +I+ L+ L + + L + G ++ + + +++D + Sbjct: 674 VYSLKIYLVLKNLLYDKDLSYNFIEEMSVVSLISKMELYGILLETKILNQYKKLLDEKSA 733 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTP 271 L E + + R + ++ ++ + L + + + + + N Sbjct: 734 NL---CEYFRDNNLLNPRSIPQVTKVIYQDLKLKLPHPPPTKVDKKSLNEIKALNPNQEE 790 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ-------------FLGASRTGR 318 + R + ++ +E +S Q + TGR Sbjct: 791 FINNLLIYRN-LEKINKTYISAYLELADSYYDKFHQNQNESNKKAFIKCDWLQCGTSTGR 849 Query: 319 WSGCVFPPQNLPRPSRSH-------------------EELDQIITHLPTSITSDPDPLQI 359 S C QN+ R + ++ + Sbjct: 850 LSSCNPNMQNVCRNTSIISFDDEEDQASSQIDDLFLMTHIEDDQNQNQNHNQNQNQNQNQ 909 Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 + +R I+ +G ++ D IE RV++ + ++ + F +D+ ++ N Sbjct: 910 ETINIRDAFISRDGYTMLAYDYNQIELRVMSHFSNDKHLINYFNNNQDVIRRMASKLLNK 969 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 VT D+R K + + G+ + Sbjct: 970 EINDVTTDEREKTKRVVYGIM--------------YGIGPQSL----------------- 998 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 +A E + + ++ ++S + +Q Sbjct: 999 -------------GKLLKISTSAAELLINNFYKEFPQISSFITTTKNSLKQ--------- 1036 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 N+ + SGR ++ N+ + Sbjct: 1037 ----------------NDPEVRTISGRIRKLGEIKNSFD-----------ISIAKRRSVN 1069 Query: 600 NIVQAVSRDILAEGMMNATKAGYDI------------------------VLTVHDEIVCE 635 I+Q S DI+ + M+ DI +L +HDE++ E Sbjct: 1070 TIIQGSSADIIKKSMVKINNFFGDICSIFNNNNNNNNSNNNNNQISPRFLLQIHDELIFE 1129 Query: 636 TPD--TDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 P +E + + +LM S +K LK + Sbjct: 1130 VPTFLIEEHRVDLYIKYLMESV---SKDFNLKVD 1160 >gi|3063700|emb|CAA18591.1| putative protein [Arabidopsis thaliana] gi|7270174|emb|CAB79987.1| putative protein [Arabidopsis thaliana] Length = 1548 Score = 177 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 88/707 (12%), Positives = 180/707 (25%), Gaps = 176/707 (24%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVL--KEALENTDVTI--VA--HN----SYFERT 78 + A ++ PV + D + + ++ +E+ + V HN Sbjct: 933 EIHGIAICWNCSPVYYVNLNKDLPNLECVEKQKLIEDAVIGKSEVLASHNMLDVIKSRWN 992 Query: 79 VLKACFNLDIPIHRW---ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE------- 128 + + CT R N + + L + Sbjct: 993 KISKIMGNVLKSPAISIQRCT----RLNLPEGIRDELVDGSWLMMPPLHTSHTIDMSIVI 1048 Query: 129 LIARFCK-----GETHECLYDRNKPNHREAWRL-----------FGEYCKGDVTVTREIF 172 I + + + R P EA C V TR + Sbjct: 1049 WILWPDEERHSNPNIDKEVKKRLSPEAAEAANRSGRWRNQIRRVAHNGCCRRVAQTRALC 1108 Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L + + E L + + G +D+ I+ + L+++ Sbjct: 1109 SALWKILVSEELLQALTTIEMPLVNVLADMELWGIGIDIEGCLRARNILRDKLRSLEKKA 1168 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLE---DLTE---TTCQRVLSSNKKLTPQAIQV 276 L S + LF + L + + +T + L Sbjct: 1169 FELAGMT-FSLHNPADIANVLFGQLKLPIPENQSKGKLHPSTDKHCLDLL---------- 1217 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + + D RL L Sbjct: 1218 ----RYSEWLIAFPYIAFCFFIIKDNRLFELLSASV-----------------------E 1250 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGE 395 E++ + ++SD D +I + R + E L+ AD + IE R++A + + Sbjct: 1251 HEVEFKLDKNGRDVSSDADRYKINA---RDFFVPTQENWLLLTADYSQIELRLMAHFSRD 1307 Query: 396 QWKLKA-FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + D++ A+ A V+ R K + + Y G Sbjct: 1308 SSLISKLSQPEGDVFTMIAAKWTGKAEDSVSPHDRDQTKRLIYGILYGMG---------- 1357 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 A + + ++++ Sbjct: 1358 ----------------------------------ANRLAEQLECTSDEAKEKIRSFKSSF 1383 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V+ NE ++ + ++ + + + + GR + Sbjct: 1384 PAVTSWLNETISFCQEKGWGCYRLFPLLFVLNAVLCVPLNHIFIYIQTLKGRRRFLSKIK 1443 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT---------------- 618 + + + R+ ++ Q + DI+ M+N Sbjct: 1444 FGNAKEKS---KAQRQA------VNSMCQGSAADIIKIAMINIYSAIAEDVDTAASSSSS 1494 Query: 619 -------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSW 657 K I+L VHDE+V E + A+ML M + S Sbjct: 1495 ETRFHMLKGRCRILLQVHDELVLEVDPSYVKLAAMLLQTSMENAVSL 1541 >gi|229020744|ref|ZP_04177467.1| DNA-directed DNA polymerase [Bacillus cereus AH1273] gi|229026983|ref|ZP_04183301.1| DNA-directed DNA polymerase [Bacillus cereus AH1272] gi|228734300|gb|EEL84976.1| DNA-directed DNA polymerase [Bacillus cereus AH1272] gi|228740545|gb|EEL90820.1| DNA-directed DNA polymerase [Bacillus cereus AH1273] Length = 808 Score = 177 bits (449), Expect = 5e-42, Method: Composition-based stats. Identities = 93/761 (12%), Positives = 191/761 (25%), Gaps = 211/761 (27%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---MPQVLKEAL-ENTDVTIVAH 71 + + A + V+ + V + +L E L +N V +A Sbjct: 143 ICTVSLSAAAHESRVVPISHKV--GQVFEPSMDRGEARKLVLDLLDEYLFKNEKVLKIAV 200 Query: 72 NSYFERTVLKACFNLDIPIHRWICTLVLARS----------NGLPSALKAVGEALKLSSQ 121 N FE + + L++ P K + Sbjct: 201 NLSFETKYAAKYGKYIL--GKVADPLIM-WVRCLQIAAPQKINNPK--KPTSGWGLKPAT 255 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF--------- 172 K G + + ++ + + Y D + + Sbjct: 256 KHIFGVTMNDFAALLKKYKVDF---FDEIDASKGEGLLYSAEDADYALQHYEYWSQIAAQ 312 Query: 173 -KRLEPLSS-KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 R E E + + G D LA Q ++ + + + ++ + Sbjct: 313 IPRYEDWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETF 372 Query: 231 S------SSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNK-------------- 267 + S ++K+ +F + + + Q L Sbjct: 373 NIDINTGKSGKTNEVKSLMFDYLKIPVAKYGKTGASLDQEALIDMAFMLENKLNDIDEEK 432 Query: 268 ----------------------------------KLTPQAIQVFNNRMRASRSAVLKLNT 293 + P Q + + Sbjct: 433 YLSISLPENWESIDPDKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQ-KYTTL 491 Query: 294 LVEAMNSDGRL------RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 L + + R + + TGR + QN+PRP + Sbjct: 492 LSSHIIGREKYLNFMSGRIHAGYSPFTETGRLNSFNPNGQNVPRPDNDEFK--------- 542 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R+ + GK L D +G E R++AW +G++ ++ F TG D Sbjct: 543 ----------------IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGD 586 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T + + A++ K +R K + Y G A Q Sbjct: 587 MHRRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQ------------------ 628 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + C ++ A + + R+ E ++ Sbjct: 629 --------------------FTFKTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLE 668 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + + G + + + Sbjct: 669 ARE--------------------------QGYVQTIYGYMRLLPGINSAN---RRDRGSA 699 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----------GYDIVLTVHDEIVCET 636 R+ VQ + DI+ + ++ D++ +HDEI+ E Sbjct: 700 ERQAANTP------VQGSAADIMKKVQNEIYESIGKQEGVLAHGSADMIAQIHDEIIFEI 753 Query: 637 PDTDEFNA---SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 D E + +M P +P++AEG R+ Sbjct: 754 DDDPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEGSVGYRWG 794 >gi|169837915|ref|ZP_02871103.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a] Length = 552 Score = 177 bits (449), Expect = 5e-42, Method: Composition-based stats. Identities = 66/440 (15%), Positives = 140/440 (31%), Gaps = 68/440 (15%) Query: 11 RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVA 70 S I L+ + +D + + + D + + L + ++ Sbjct: 176 TSKIKLSAETVVHIIDDKII----IAPNRSKAFICDVTNASDLVFDLI-----STTKMIC 226 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 ++ + N++I + + + + LSS + E E Sbjct: 227 YDVK-DTLHKLNALNINIVVDKVFDIKQASFLIDP------LIRDRSLSSIVVGEIDESN 279 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190 + + + + + + L L Sbjct: 280 PAVVITAIWNAYDTQMEKFKNDKI-------------------LYKIATDFDFPLAPLLF 320 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET--- 247 + RG ++ + ++ + + +L Q++ + + +L LF++ Sbjct: 321 KMEKRGVKINTSYLADMSHEIGKKYEELQQKIFDIAGY-NFNIASPAQLSDMLFIKLQLP 379 Query: 248 --GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 G+ +T Q+ L+ + L P + R ++ ++ L + ++ + RL Sbjct: 380 TTGIKKGKTGYSTGQKELNKLRGLHPVIELIEQTR-ELAKLKNTYVDALPKLVDKNYRLH 438 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 T TGR S QN+P S + +R Sbjct: 439 TTFNQDVV-STGRLSSTHPNLQNIPIRS-------------------------TLGKKIR 472 Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + IA E LV AD + E R+ A MAG++ + F D++ T + + + QVT Sbjct: 473 NAFIADEDNILVSADYSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASDVYKIPMDQVT 532 Query: 426 KDQRAIGKVMELALGYQGGA 445 +QR KV+ + Y Sbjct: 533 SNQRRNAKVINFGVLYGMSP 552 >gi|218186696|gb|EEC69123.1| hypothetical protein OsI_38041 [Oryza sativa Indica Group] Length = 1986 Score = 176 bits (447), Expect = 9e-42, Method: Composition-based stats. Identities = 85/714 (11%), Positives = 170/714 (23%), Gaps = 215/714 (30%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ------- 55 D + ++ A +++ PV + D +M Sbjct: 1387 EFSFDLH-YVKKSIKSSSTY-----FDILGLAVCWENSPVYYCNFPKDLMMAGSNDSIEM 1440 Query: 56 ---------VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106 + E + V + N F+ LK + R L+R + Sbjct: 1441 WDELTRRWNRVIEIMRQNSVKKMTWNLKFQIQALKYPC---VSCQR------LSRLH--- 1488 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 L K E + + F + + D W ++ Sbjct: 1489 ---------LDYKMLKNVEVLDNLYVFLQPVSVHSGLDICL-VAWVLWPDEESKTVPNLE 1538 Query: 167 VTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 TR + L L + L + + G D+ I+ + Sbjct: 1539 KTRALCSVLRKLLVSQNLNDLLETIEGPLVNVLADMELWGIGADMDACLRARHIIIRKLK 1598 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED---LTE---TTCQRVLSSNKKLT 270 +L++E L S + L+ L + + +T ++ L + Sbjct: 1599 ELEKEAYKLAG-KSFSLNATADIADVLYTHLKLPVPKGCGKGKLHPSTDKQSLDHLRDQH 1657 Query: 271 PQAIQVFNNRMRASRSAVLK--LNTLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQ 327 P + +R A + + + + R + ++ TGR S Q Sbjct: 1658 PIISVIKEHRTLAKLLNGTLGSICSRAQLCSKSQRYIIQGNWLQTSTATGRLSMEEPNLQ 1717 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 E LV AD + IE R Sbjct: 1718 --------------------------------------------ENWLLVTADYSQIELR 1733 Query: 388 VLAWMAGEQWKLKA-FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 ++A + + ++ + D++ +R A + + +R K + Sbjct: 1734 LMAHFSKDTALIELLSKPDGDVFTMIASRWTGKAESLICSKERETTKRFIYGIL------ 1787 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 A + + Sbjct: 1788 --------------------------------------YGMGANSLAEQLECSPEDAAQK 1809 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 +++++ VS LH+A G GR Sbjct: 1810 IQSFKRFFPGVSSW---LHEAVASCRHKGYVETL-----------------------MGR 1843 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------- 618 + S + R+ +I Q + DI+ M+ Sbjct: 1844 RRFLSKITAGNSKEK---AKAQRQA------VNSICQGSAADIIKVAMIKVHSAITNGST 1894 Query: 619 ------------------KAGYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTS 653 + ++L VHDE+V E +L +M + Sbjct: 1895 VGATVDSIDVAMQNFSEIRGRCHLILQVHDELVLEVDPCMVAEAVRLLQTVMEN 1948 >gi|225430047|ref|XP_002281624.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 2100 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 89/722 (12%), Positives = 172/722 (23%), Gaps = 226/722 (31%) Query: 29 CVILFAFGFDDHPVELWDCVHD--------------------PVMPQ------------- 55 + A +++ PV + D P + Sbjct: 1470 EIHGIAICWENSPVYYINLPKDLLCSDERKNIYLTMNVSDDKPNILDANHRLEAAKWRWS 1529 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKA-------CFNLDIPIHRWICTLVL-----ARSN 103 + + + DV N + VLK +L++ + T+ L + Sbjct: 1530 KVGKIMGKKDVRKFTWNLKVQIQVLKNPAVSIQKFGSLNLAMR----TMGLELIDNSYLM 1585 Query: 104 GLP----SALKAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP--NHREAWRL 156 P L + ++ L K + E N+ + R Sbjct: 1586 LSPVYIVDGLDMCIVTWILWPDEERSSNPNLEKEVRKRLSSEAAAAANRSGRWKNQTRRA 1645 Query: 157 FGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHT 206 C V TR + L L E L + + G VD+ Sbjct: 1646 AHNGCCRRVAQTRALCSVLWKLLVSEELVEVLLRIEIPLVTILADMEVWGIGVDMEGCIQ 1705 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE---DLTE---TTCQ 260 ++ + L++E L S + L+ L + + + +T + Sbjct: 1706 ARNVLGKKLRHLEKEAYELAGMT-FSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDK 1764 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN----TLVEAMNSDGRLRGTLQFLGASRT 316 L + P + +R A + + L G ++ T Sbjct: 1765 HCLDLLRHEHPIIPVIKEHRTLAKLLNCTLGSICSLARLSLQTQRYTLHGHWLQ-TSTAT 1823 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S Q E L Sbjct: 1824 GRLSMEEPNLQ--------------------------------------------ENWLL 1839 Query: 377 VVADLAGIEARVLAWMAGEQWKLKA-FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 + AD + IE R++A + + + + D++ A+ + V +R K + Sbjct: 1840 LTADYSQIELRLMAHFSRDSSLTELLSKPHGDVFTMIAAKWTGKPESVVGYQEREQTKRL 1899 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + A + Sbjct: 1900 VYGIL--------------------------------------------YGMGANTLAKQ 1915 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 E +++R V+ + + + ++R + + K Sbjct: 1916 LECSLGEAEEKIRSFRSSFPGVASWLH--EAVACCCKKGYVKTLKGRKRFLSKIKFGTSK 1973 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 L + R+ +I Q + DI+ M+ Sbjct: 1974 EKL---------------------------KARRQA------VNSICQGSAADIIKIAMI 2000 Query: 616 NAT-----------------------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LM 651 N K I+L VHDE+V E + A +L M Sbjct: 2001 NIHSVIAEGVDEPNSSTELPAKFHMLKGRCRIILQVHDELVLEVDPSVMKEAGLLLKMTM 2060 Query: 652 TS 653 + Sbjct: 2061 EN 2062 >gi|157888638|emb|CAE47762.2| novel protein similar to humna DNA-directed polymerase theta (POLQ) [Danio rerio] Length = 2239 Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 90/700 (12%), Positives = 191/700 (27%), Gaps = 140/700 (20%) Query: 46 DCVHDPVMPQVLKEA---LE-NTDVTIVAHNSYFERTVLKACFNLDIPI---HRWICTLV 98 + + LK+ L+ ++ VT+ ++ L L + + + Sbjct: 1602 PLDDTLTVEERLKQIQSCLQKDSSVTVT-----YDFIHLYKILLLACELAVRGTFEDPKI 1656 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 S + + M ++ EA + Sbjct: 1657 ACWLLDSSSKERTL--------HNMVTSFATEDLPLLEGISAGQGVQSLGIFGEASQPGR 1708 Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLN 208 + + + +L L K+ Y + G +A Sbjct: 1709 YRAAIESVLVFRVMTQLNCLLEKDGFLDVFKKVEMPTQYCLALLELNGIGFSIAECEAQK 1768 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE---------------- 252 ++ + + L+ + L S E + LFLE L Sbjct: 1769 HVMQAKLSALESQAYQLAGHS-FSLTSPEDVAEVLFLELKLPPNGDLNGLKNKKTLGYTR 1827 Query: 253 --------DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL-------NTLVEA 297 +T + VL K L P + R + K+ Sbjct: 1828 RAGARIKLSKQFSTTKDVLEKLKPLHPLPGVILEWRRITNAL--TKVVFPLQREKKWHSH 1885 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR----------------------S 335 + D R+ Q A+ GR S QN+P+ Sbjct: 1886 LKMD-RIHPISQSHTAT--GRVSFTEPNIQNVPKDFEIQMPTLIEESQTSQNGGSKMWCK 1942 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 ++++ + L PD S +R + G ++ D + +E R+LA ++ + Sbjct: 1943 RTKINRQLAPLLKVSDKSPDKGMQFSVSMRHAFVPFSGGLILAVDYSQLELRILAHLSRD 2002 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L +G D++ + A V PA V + R K + + Y GAK+ + Sbjct: 2003 RRLLHVLNSGADVFKSIAAEWKMVDPASVDDNMRQQAKQICYGIIYGMGAKSLGE----- 2057 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + + + + +NF R + ++ +G +R + + Sbjct: 2058 QMGIEENDAACYIETFKSRYNGIQNFLRETVQKCGKNGYVKTLLGR--KRFLPGIKDSNV 2115 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + A Q + A + + +++ +P+ S + + Sbjct: 2116 YIKS------HAERQAVNTTVQGSAADIVKLATINIQRRIEEAFPGVPT--SHQHPSIRL 2167 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 + N G +L +HDE++ E Sbjct: 2168 GGRHRNQFRPL---------------------------------RGGYFILQLHDELIYE 2194 Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674 + D + + M S + L+ + + Sbjct: 2195 VAEEDVIQVAQIVKREMESVVKLY--VKLRVKVKVGPSWG 2232 >gi|118090791|ref|XP_420834.2| PREDICTED: similar to DNA polymerase N [Gallus gallus] Length = 530 Score = 176 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 87/583 (14%), Positives = 167/583 (28%), Gaps = 124/583 (21%) Query: 54 PQVLKEALENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 QVL + L V ++ N+ F +TVL + I + + + Sbjct: 31 LQVLFQILRCK-VPVICFNAKDFLKTVL-QVYGSGISWKQVAD----SIVLDPR-----I 79 Query: 113 GEALKLSSQKMEEGKELIARFCKGETH-----ECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L SS + + L+ F K + + RN + L Y + + Sbjct: 80 AAWLINSSDTVPSFECLLQYFEKSYSVETVNTDTGGLRNSRHQNLVVNLQKLYTIM-MGL 138 Query: 168 TREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 ++ + EL + + VD ++I+ + +L++E + Sbjct: 139 AHDLQVQGLWKLFCTLELPLIKVLAVMETHKIHVDKQELKKTSEILGLRLKELEEEAHQI 198 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-----HLEDLT----ETTCQRVLSSNKKLTPQAIQV 276 +L+ LF + L + +T + VLS + L P + Sbjct: 199 AG-ERFLLTSSSQLREVLFEKLKLHTLCEKIPRTERQQVASTSEVVLSKLQDLHPLPKLM 257 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R + ++ L G + T G + TGR S Q + + Sbjct: 258 LEYRQ-VRKMKSTYVDGL-RTCMRKGFICPTWNQTG-TVTGRLSSKHPNIQGISKHPVRI 314 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + I +T P R+ ++ +G + AD + IE R+LA ++ E Sbjct: 315 TKKQYIKGKEEEILTISP----------RALFVSKKGYTFLAADFSQIELRILADLSAEP 364 Query: 397 WKLKAFETGEDLYVTTY--ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 LK F+ E + T ++ + QV + R K + Sbjct: 365 ELLKLFQEPETTDIFTSLASQWKGIPSEQVKQTDREQAKRIV------------------ 406 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + A +++ QK+ Sbjct: 407 --------------------------YSVVYGAGKERLAECLGITPHEAGHFIESFMQKY 440 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +V E + Q G + GR + ++ Sbjct: 441 KKVHEF---TKKTIGQCQNKGYVVSI-----------------------MGRKRLLANIN 474 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 + L T Q R+ +VQ + D+ M+ Sbjct: 475 SQDYKLRT---QAERQA------VNFVVQGSAADLCKMAMVEI 508 >gi|297830744|ref|XP_002883254.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata] gi|297329094|gb|EFH59513.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata] Length = 1044 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 61/408 (14%), Positives = 110/408 (26%), Gaps = 93/408 (22%) Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + L DGR+ +L + TGR S QN P Sbjct: 715 LCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQP---- 768 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 L+ +R IAS G L+VAD +E R+LA +A Sbjct: 769 ---------------------ALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLAS 807 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + +AF G D + T + V + + Sbjct: 808 CKSMKEAFIAGGDFHSRTAMNMYPHIREAVENGEV------------------LLEWHPQ 849 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G L ++ NF + + + + W Sbjct: 850 PGQEKPPVPLLKDAFASERRKAKMLNFSIAYGKTAIGLSRDWKVSIEEAQDTVNLWYNDR 909 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + ++ I+NG + GR+ + Sbjct: 910 QEVRKWQ---ELRKKEAIQNGYVLTLL-----------------------GRARKFPVYR 943 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628 + + R VQ + D+ M+ +K G+ ++L + Sbjct: 944 S-----RAQKNHIERAAINTP------VQGSAADVAMCAMLEISKNQRLKELGWKLLLQI 992 Query: 629 HDEIVCETPDTDEFNASML-YHLMTSNP--SWAKGLPLKAEGYESKRY 673 HDE++ E P NA + + M+ + L + ++ + Sbjct: 993 HDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCAQNW 1040 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 49/343 (14%), Positives = 96/343 (27%), Gaps = 76/343 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DC--VHDPVMPQ 55 D E S ID+ + +I F+ F D +W D + + Sbjct: 280 ACDTE-VSRIDVKTETP---VDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILA 335 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------SA 108 K E++ + V HN F+ +++ I + + T+ +AR + Sbjct: 336 EFKPFFEDSSIKKVWHNYSFDNHIIRNY---GIKLSGFHGDTMHMARLWDSSRRISGGYS 392 Query: 109 LKAV---------------GEALKLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHRE 152 L+A+ E S K GK +L +G+ + E Sbjct: 393 LEALTSDPRVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQM--E 450 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLS----------------------SKEQELWYLDQ 190 + Y D T ++++ ++ Q L Sbjct: 451 DREAWISYSALDSISTLKLYESMKKQLQAKKWFLDGNLISKQNMFDFYQEYWQPFGELLA 510 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQEL-----ESLTYGLVSSSRCLEKLKTWLF- 244 + G VD + + E+ + + +L+ F Sbjct: 511 KMESEGMLVDRDYLAQIEIVAKAEQEIAVSRFRSWASKHCPDAKHMNVGSDTQLRQLFFG 570 Query: 245 ------LETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNR 280 + L E L + +V+ KK + + +R Sbjct: 571 GISNSCNDEDLPYEKLFKVPNVDKVIEKGKKRATKFRNIKLHR 613 >gi|115475031|ref|NP_001061112.1| Os08g0175300 [Oryza sativa Japonica Group] gi|40253292|dbj|BAD05227.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group] gi|40253609|dbj|BAD05554.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group] gi|113623081|dbj|BAF23026.1| Os08g0175300 [Oryza sativa Japonica Group] gi|215737038|dbj|BAG95967.1| unnamed protein product [Oryza sativa Japonica Group] gi|222640001|gb|EEE68133.1| hypothetical protein OsJ_26226 [Oryza sativa Japonica Group] Length = 1033 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 61/408 (14%), Positives = 109/408 (26%), Gaps = 91/408 (22%) Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + L +GR+ +L + TGR S QN P Sbjct: 702 LCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNIN--TETGRLSARTPNLQNQP---- 755 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 L+ +R +A+ G L+VAD +E R+LA + Sbjct: 756 ---------------------ALEKDRYKIRHAFVAAPGNTLIVADYGQLELRILAHLTN 794 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L+AF+ G D + T + V + K + Sbjct: 795 CKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEE------------------KKVLLEWHPQ 836 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G + L A NF + + + K W + Sbjct: 837 PGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWKVSVREARDTLKLWYRDR 896 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 VS + + E GRS + ++ Sbjct: 897 KEVSAWQKKQKAFALEKCEVY--------------------------TLLGRSRQFPNMT 930 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628 + R VQ + D+ M+ + G+ ++L V Sbjct: 931 HAGPGQKGHV---ERAAINAP------VQGSAADVAMCAMLEIERNARLKELGWRLLLQV 981 Query: 629 HDEIVCETPDTDEFNASML-YHLMTSNP--SWAKGLPLKAEGYESKRY 673 HDE++ E P A + M+ + + L + +K + Sbjct: 982 HDEVILEGPTESAEEAKTIVVECMSKPFYGTNILKVDLAVDAKYAKSW 1029 >gi|326426432|gb|EGD72002.1| hypothetical protein PTSG_00018 [Salpingoeca sp. ATCC 50818] Length = 830 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 70/572 (12%), Positives = 160/572 (27%), Gaps = 115/572 (20%) Query: 91 HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 T V A A + + +L + + + Sbjct: 322 IAVRDTQVAAWLADPERAWDDMDDVFRL------------CQLRPVTRGAGDLGDSSASA 369 Query: 151 REAW--RLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHT 206 W +L + + + + E +L + G +D Sbjct: 370 SSQWLHKLASRHAAAFDHLFARLRACDQAELYSRLEAPAIWLLAEMQVHGIHIDTETLKQ 429 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET----GLH----LEDLTETT 258 + +L+ E+L + +L+ +L+ + G+ +T Sbjct: 430 QRVQIQQCLAELEARAEALVGFKL-LLTSPLQLREYLYDQLQLHVGIPNFPRTPKGKLST 488 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 + L+ K + +R A+R ++ ++ + G L ++ +GR Sbjct: 489 GEDALTLIKDRHELPNLLLLHRR-AARLLCTYIDGVLPHVTH-GMLHPEWLQ-TSAASGR 545 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378 S Q++P + L ++ R+ +A G V Sbjct: 546 VSCQQPNIQSVPLRETALR-------------------LDLLVVSPRAAYVAPGGCVYVS 586 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 D +E R+LA + ++ + F+ E N P+ R Sbjct: 587 LDWRQMELRLLAHFSEDEGLIALFQNQEAKAKA------NTPPSTANATSREE------- 633 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G + F+ +A + + + + + + Sbjct: 634 ---GGTSDPFKALA-----SKWFCVPVEQVTGRQRDQVKRCLYAFIYGSGALHLSKVLEV 685 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +++ +A+R++H R+ L +++ + + K Sbjct: 686 SVHEAKKLLQAFRRRHPRIQHLRDQV--------------------------LIRLKETG 719 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 + S R ++D + R ++Q + DI M+N Sbjct: 720 FVSCLSRRRRYFKD---------SANDHSQRAA------FNFLLQGSAADICKAAMINLR 764 Query: 619 K------AGYDIVLTVHDEIVCETPDTDEFNA 644 + +V +HDEI+ E P+ + Sbjct: 765 EFLRAKQMRSFMVAQLHDEIILECPEKEAKEV 796 >gi|19912795|dbj|BAB40805.2| PolI-like DNA polymerase [Oryza sativa] Length = 976 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 61/408 (14%), Positives = 109/408 (26%), Gaps = 91/408 (22%) Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + L +GR+ +L + TGR S QN P Sbjct: 645 LCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNIN--TETGRLSARTPNLQNQP---- 698 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 L+ +R +A+ G L+VAD +E R+LA + Sbjct: 699 ---------------------VLEKDRYKIRHAFVAAPGNTLIVADYGQLELRILAHLTN 737 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L+AF+ G D + T + V + K + Sbjct: 738 CKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEE------------------KKVLLEWHPQ 779 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G + L A NF + + + K W + Sbjct: 780 PGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWKVSVREARDTLKLWYRDR 839 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 VS + + E GRS + ++ Sbjct: 840 KEVSAWQKKQKAFALEKCEVY--------------------------TLLGRSRQFPNMT 873 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628 + R VQ + D+ M+ + G+ ++L V Sbjct: 874 HAGPGQKGHV---ERAAINAP------VQGSAADVAMCAMLEIERNARLKELGWRLLLQV 924 Query: 629 HDEIVCETPDTDEFNASML-YHLMTSNP--SWAKGLPLKAEGYESKRY 673 HDE++ E P A + M+ + + L + +K + Sbjct: 925 HDEVILEGPTESAEEAKTIVVECMSKPFYGTNILKVDLAVDAKYAKSW 972 >gi|224050209|ref|XP_002195724.1| PREDICTED: similar to polymerase (DNA directed) nu [Taeniopygia guttata] Length = 631 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 91/590 (15%), Positives = 166/590 (28%), Gaps = 125/590 (21%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFE-RTVLKACFNLDIPIHRWI-----CTLVLAR 101 H QVL + L+ V I+ N+ + L + +I + + A Sbjct: 118 AHKKFSWQVLFQMLQCK-VPIICFNAK-DFLRTLLQIYGNEISWKQVANSVVLDPRIAAW 175 Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD-RNKPNHREAWRLFGEY 160 + S + K F KG + RN L Y Sbjct: 176 LINPSDT---------VPSFECLIQKYFEKPFSKGAENTDTDTLRNISYQNLGVNLEKLY 226 Query: 161 CKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + + + + EL + + VD ++I+ + +L Sbjct: 227 NVM-MDLAHGLKAQGLWNLFCTLELPLIKILAVMETHKIYVDKQELKKTSEILGLRLKEL 285 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-------TTCQRVLSSNKKL 269 ++E + +L+ LF + LH E L +T + VL+ + L Sbjct: 286 EREAHEVAG-ERFLLTSSCQLREVLFDKLKLHTLCEKLQRTEIQQLVSTSEVVLNKLQDL 344 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P + R + ++ L G + T G + TGR S Q + Sbjct: 345 HPLPKIILEYRQ-VHKMKSTYVDGL-RTCMKKGFISSTWNQTG-TVTGRLSAKHPNIQGI 401 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 + + + I IT P R+ ++ +G + AD + IE R+L Sbjct: 402 SKHPVTIAKKQYIKGKEEDIITISP----------RTLFVSKKGCTFLAADFSHIELRIL 451 Query: 390 AWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 A ++ E LK F+ E D++ T ++ + QV R K + Sbjct: 452 ADLSSEPELLKLFQEPEITDIFATLASQWKGIPSEQVKHADREQAKRIV----------- 500 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + A + Sbjct: 501 ---------------------------------YSVVYGAGKERLADCLGITPVQASQFI 527 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 +++ QK+ +V E + EQ G + GR Sbjct: 528 ESFMQKYKKVHEF---TKKTIEQCRNKGYVVSI-----------------------MGRK 561 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 ++ L T Q R+ +VQ + D+ M+ Sbjct: 562 RPLANINAQDYKLRT---QAERQA------VNFVVQGSAADLCKMAMVKI 602 >gi|308522710|ref|NP_001184156.1| polymerase (DNA directed), theta [Xenopus (Silurana) tropicalis] Length = 2671 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 93/749 (12%), Positives = 185/749 (24%), Gaps = 162/749 (21%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT------DVTIVAHNSYFERT 78 +DV ++ A + + +L V +R Sbjct: 1979 MDDVLLVGLAVCWGGKDAYYISL-QKEQDQADICPSLAPPPLDQTLSVK--------DRL 2029 Query: 79 VLKACFNLDIPIHRWICTLVL--------ARSNGLPSALKA------VGEALKLSSQKME 124 I T+++ A +L V L K Sbjct: 2030 WHIQSALQQIRPGGSEPTIIMYDCIEQYKALLLACRVSLAGHFQDPKVACWLLDPGSKER 2089 Query: 125 EGKELIARFCKGE------THECLYDRNKPNHREAWRLFGEYCKGDVTVT---------- 168 ++ F E ++ + + + V Sbjct: 2090 TLHNMVTNFLPYELPLLDGVGPGQGVQSLGLSPSSDQTGRYRAAIEAVVVFSTMNALGAL 2149 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E K + E Y + G T I++ + +++ L Sbjct: 2150 LEKEKLQDAFHRVEMPTQYCLALLELNGMGFSTEECETQKHIMEAKLNEIEAVAYQLAG- 2208 Query: 229 LVSSSRCLEKLKTWLFLETGLHL---ED------------------------LTETTCQR 261 S + L LFLE L +T + Sbjct: 2209 RSFSLTSHDDLAQVLFLELKLPPNGDPKAQGNKKTLGYTRRAAASGARVRLGKQFSTAKD 2268 Query: 262 VLSSNKKLTPQAIQVF-NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRW 319 VL K L P + R+ + + V+ + +N + G R + TGR Sbjct: 2269 VLEKLKALHPLPGLILEWKRITNALTKVVFPLQREKLLNPNLGMERIYPISQTHTATGRV 2328 Query: 320 SGCVFPPQNLPRP---------------SRSHEELDQIITHLPTSITSDPDPLQIISD-- 362 S QN+P+ + P P + Sbjct: 2329 SFTEPNIQNVPKDFEIEMPRLVGESPPSQAPGPSAYPYRNRGKKPQVNTPGPKVPVEQIP 2388 Query: 363 ---------CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R + G ++ A + +E R+LA ++ ++ ++ +G D++ + Sbjct: 2389 AERGVSFFVSMRHAFVPFPGGLILAAAYSQLELRILAHLSRDRRLIQVLNSGSDVFKSIA 2448 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 A + P VT R K + + Y GAK+ + + + ++ Sbjct: 2449 AEWKMIDPEAVTDTVRQQAKQICYGIIYGMGAKSLGE-----QMGIEESDAACYIDTFKS 2503 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + F + + +G R A + + + T Sbjct: 2504 RYTGIQKFLKETVRSCTRDGFVQTILGR--RRYLPAIKDSNPYAKS---HAERQAVNTTV 2558 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 G A K + ++L + Sbjct: 2559 QGSAADIVK-----------------------------------TATVNIQKRLEETFPS 2583 Query: 594 GGKLTENIVQ--AVSRDILAEGMMNATK-----AGYDIVLTVHDEIVCETPDTDEFNASM 646 K E+ VQ R G +L +HDE++ E D + Sbjct: 2584 VPKSHEHPVQAGGTGR------AERLRHRPPPTRGAFFILQLHDELLYEAAQEDAIQVAQ 2637 Query: 647 -LYHLMTSNPSWAKGLPLKAEGYESKRYR 674 + M + + L+ + + Sbjct: 2638 IIKKEMENAMK--LSVKLRVKVKMGPSWG 2664 >gi|255563979|ref|XP_002522989.1| DNA polymerase I, putative [Ricinus communis] gi|223537801|gb|EEF39419.1| DNA polymerase I, putative [Ricinus communis] Length = 963 Score = 174 bits (440), Expect = 6e-41, Method: Composition-based stats. Identities = 61/421 (14%), Positives = 113/421 (26%), Gaps = 89/421 (21%) Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L + + L + S R R + TGR S Sbjct: 618 LEEGIEACHAIAS-LCEVCSIDSLISNFILPLQGSNVSGKRGRVHCSLNINTETGRLSAR 676 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 QN P L+ +R IA+ G L+VAD Sbjct: 677 RPNLQNQP-------------------------ALEKDRYKIRQAFIAAPGNSLIVADYG 711 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 +E R+LA +A + L+AF+ G D + T + V K + Sbjct: 712 QLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIHEAVDKGEV------------- 758 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + G L + NF + A + Sbjct: 759 -----LLEWDPQPGEEKPPVPLLKDAFGSERRKAKMLNFSIAYGKTPVGLARDWKVSIEE 813 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + W ++ V + + + + + Sbjct: 814 AKETVNLWYRERQEVLKWQEARKKEARE--------------------------DGRVHT 847 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--- 619 GR+ V+ + + N R + R VQ + D+ M+ ++ Sbjct: 848 LLGRARVFPSISH---ASNAQKRHIERAAINTP------VQGSAADVAMCAMLQISRNKR 898 Query: 620 ---AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP---SWAKGLPLKAEGYESKR 672 G+ ++L +HDE++ E P A + M+ + L + ++ Sbjct: 899 LKELGWKLLLQIHDEVILEGPTESAVVAKDIVIECMSKPFFNGVNILKVDLSVDAKCAEN 958 Query: 673 Y 673 + Sbjct: 959 W 959 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 45/339 (13%), Positives = 98/339 (28%), Gaps = 71/339 (20%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DCVHDP--VMPQ 55 D E + ID+ + +I F+ F + +W D + + Sbjct: 208 ACDTE-VAKIDVKQETP---VGHGEIICFSIYSGPEADFGNGTSCIWVDVLDGGGRDLLV 263 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------SA 108 K EN ++ V HN F++ V++ ++P+ + T+ +AR + Sbjct: 264 KFKPFFENPEIKKVWHNYSFDKHVIQNY---EVPVCGFHADTMHMARLWNSSRRTEGGYS 320 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGE-------THECLYDRNKPNHR------EAWR 155 L+A+ ++ S + LI + + + E Sbjct: 321 LEALTGDKRVMSGAQSCFEGLIGKVSMKTIFGKNKLKKDGSEGKMITVAPVEELQREERE 380 Query: 156 LFGEYCKGDVTVTREIFKRLEPLS---------------------SKEQELWYLDQTIND 194 + Y D T ++++ L+ + L + Sbjct: 381 PWICYSALDAISTWQLYESLKRKLFHMPWNLNGKPVGKSMLDFYKEYWRPFGELLVRMET 440 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLFLETG- 248 G VD A + ++ VE+ + + +L+ F Sbjct: 441 EGILVDRAYLAEIEKVAKVEQEIAVNRFRNWACKYCPDAKYMNVGSDTQLRQLFFGGIAN 500 Query: 249 -------LHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNN 279 L +E + +V+ KK + + + Sbjct: 501 SKDPDSILPVEKKIKVPNVDKVIEEGKKAPTKFCSITLH 539 >gi|229190556|ref|ZP_04317553.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876] gi|228592901|gb|EEK50723.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876] Length = 808 Score = 173 bits (439), Expect = 7e-41, Method: Composition-based stats. Identities = 92/761 (12%), Positives = 189/761 (24%), Gaps = 211/761 (27%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---MPQVLKEAL-ENTDVTIVAH 71 + + A + V+ + V D + +L E L +N V +A Sbjct: 143 ICTVSLSATAHESRVVPISHKV--GQVFEPSMDRDEARKLVLDLLDEYLFKNEKVLKIAV 200 Query: 72 NSYFERTVLKACFNLDIPIHRWICTLVLARS----------NGLPSALKAVGEALKLSSQ 121 N FE + + L++ P K L Sbjct: 201 NLSFETKYAAKYGKYIL--GKVADPLIM-WVRCLQIAAPQKINNP---KKPTSGWGLKPA 254 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 + F + + Y D + ++ ++++ Sbjct: 255 TKHIFGVTMNDFSALLKKYKVNF--FDEIDASKGEGLLYSAEDSDYAVQHYEYWSQIAAQ 312 Query: 182 EQELWYLDQTIND-----------RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 I G D LA Q ++ + + + ++ + Sbjct: 313 IPRYEEWLHKIEMSFTRAIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETF 372 Query: 231 S------SSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNK-------------- 267 + S ++K+ +F + + + Q L Sbjct: 373 NIDINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDMAFMLENKLNDIDEEK 432 Query: 268 ----------------------------------KLTPQAIQVFNNRMRASRSAVLKLNT 293 + P Q + + Sbjct: 433 YLGVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQ-KYTTL 491 Query: 294 LVEAMNSDGRL------RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 L + + R + + TGR + QN+PRP + Sbjct: 492 LSSHIIGREKYLNFMSGRIHAGYSPFTETGRLNSFNPNGQNVPRPDNDEFK--------- 542 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R+ + GK L D +G E R++AW +G++ ++ F TG D Sbjct: 543 ----------------IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGD 586 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T + + A++ K +R K + Y G A Q Sbjct: 587 MHRRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQ------------------ 628 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + C ++ A + + R+ E ++ Sbjct: 629 --------------------FTFKTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLE 668 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + + G + + + Sbjct: 669 ARE--------------------------QGYVQTIYGYMRLLPGINSAN---RRDRGSA 699 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----------GYDIVLTVHDEIVCET 636 R+ VQ + DI+ + ++ D++ +HDEI+ E Sbjct: 700 ERQAANTP------VQGSAADIMKKVQNEIYESIGKQEGVLAHGSADMIAQIHDEIIFEI 753 Query: 637 PDTDEFNA---SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 D E + +M P +P++AEG R+ Sbjct: 754 DDDPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEGSVGYRWG 794 >gi|229127294|ref|ZP_04256290.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4] gi|228656127|gb|EEL11969.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4] Length = 808 Score = 173 bits (439), Expect = 8e-41, Method: Composition-based stats. Identities = 96/759 (12%), Positives = 196/759 (25%), Gaps = 207/759 (27%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---MPQVLKEAL-ENTDVTIVAH 71 + + A + V+ + V D + +L E L +N V +A Sbjct: 143 ICTVSLSAAAHESRVVPISHKV--GQVFEPSMDRDEARKLVLDLLDEYLFKNEKVLKIAV 200 Query: 72 NSYFERTVLKACFNLDIPIHRWICTLVLARS----------NGLPS------ALKAVGEA 115 N FE + + L++ P LK + Sbjct: 201 NLSFETKYAAKYGKYIL--GKVADPLIM-WVRCLQIAAPQKINNPKKPTSGWGLKPATKH 257 Query: 116 L---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + ++ K + F + + + + EY + +I Sbjct: 258 IFGVTMNDFSALLKKYKVNFFDEIDASKGEGLLYSAEDSDYAVQHYEYWSQ---IAAQIS 314 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS- 231 + E L E + + G D LA Q ++ + + + ++ + + Sbjct: 315 RYEEWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETFNI 374 Query: 232 -----SSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNK---------------- 267 S ++K+ +F + + + Q L Sbjct: 375 DINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDMAFMLENKLNDIDEEKYL 434 Query: 268 --------------------------------KLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + P Q + + L Sbjct: 435 GVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQ-KYTTLLS 493 Query: 296 EAMNSDGRL------RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + + R + + TGR + QN+PRP + Sbjct: 494 SHIIGREKYLNFMSGRIHAGYSPFTETGRLNSFNPNGQNVPRPDNDEFK----------- 542 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R+ + GK L D +G E R++AW +G++ + F TG D++ Sbjct: 543 --------------IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMH 588 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + + A++ K +R K + Y G A Q Sbjct: 589 RRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQ-------------------- 628 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + C ++ A + + R+ E ++ Sbjct: 629 ------------------FTFKTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAR 670 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + + G + + + R Sbjct: 671 E--------------------------QGYVQTIYGYMRLLPGINSAN---RRDRGSAER 701 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA-----------GYDIVLTVHDEIVCETPD 638 + VQ + DI+ + ++ D++ +HDEI+ E D Sbjct: 702 QAANTP------VQGSAADIMKKVQNEIYESIGKQEGVLSHGSADMIAQIHDEIIFEIDD 755 Query: 639 TDEFNA---SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E + +M P +P++AEG R+ Sbjct: 756 DPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEGSVGYRWG 794 >gi|156122484|gb|ABU50233.1| DNA polymerase [Cyanophage S-CBP1] Length = 586 Score = 173 bits (439), Expect = 8e-41, Method: Composition-based stats. Identities = 104/723 (14%), Positives = 188/723 (26%), Gaps = 194/723 (26%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-DCVHDPVMPQVLKEAL 61 TL D ET G+ A + I + ++ D + + + + L Sbjct: 2 TLIFDIETD--------GLYNDASCIHCIGI-HDLNAGETYVFNDVGTQQPITKGI-QLL 51 Query: 62 ENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA-LKLS 119 E+ D IV HN ++ V+ F + + TLVL+R L + K Sbjct: 52 EDAD-LIVGHNIIGYDIPVISKLFPWFSRTNGVLDTLVLSRLYHTDL-LDIDQKRKWKHM 109 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 ++ L A + ++ + + E + +Y DV VTR+++K + Sbjct: 110 PLQLYGRHSLEAYGYRLGEYKGSFGKTADWK-EWSQDMEDYMIQDVNVTRKLWKHFPQIP 168 Query: 180 SK---EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES------------ 224 E + + G+ D A L Q + E L L Sbjct: 169 EWVQLEHRVAQILTEQEIYGWYFDENAARELAQTLYTELDDLKGVLRKRYPYVAGREFTP 228 Query: 225 --------------LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TT--CQRVLSSN 266 T + S + + + G + T+ T + VL Sbjct: 229 KRVNRSLGYVEGATCTKLVEFSPTSRDHIAWVMKNLHGWKPDKKTKAGKTAIDEIVLKEI 288 Query: 267 K-KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + Q + + + K N ++ D R+ A+ T R + Sbjct: 289 GTEEALQFFRCLEITKQLGMLSEGK-NAWLKLSRKD-RVHHHCS--VATVTHRCAHRNPN 344 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 +P R AS G +V ADL+GIE Sbjct: 345 LAQVPSD-----------------------------LNFRRLFCASPGHIMVGADLSGIE 375 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA A + A R + K + A Y G Sbjct: 376 LRMLAHYL-------ARYDDGRYGDILLHGDIHQENADKIGISRRLVKTVTYAFLYGAGD 428 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + + L+ + Sbjct: 429 QKI---GLSYDQGLSPDKAKQ-----------------------------------KGKE 450 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 +++A+ + +L +A ++ + G Sbjct: 451 IRQAYMDAIPGLEKLVEATKKAADR---------------------------GFIRSIDG 483 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI- 624 R + K ++Q+ + I M+ A I Sbjct: 484 RHINVDSSH---------------------KALNMLLQSSAGCIAKRWMVIANDNFPTID 522 Query: 625 ---------VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA-----KGLPLKAEGYES 670 + +HDE+ E A L + A +P+ AEG Sbjct: 523 NEYLAHTHQLAFIHDELQFECLP---LYAEDLKTHLELCAELAGEYYNLRIPIAAEGKIG 579 Query: 671 KRY 673 + Sbjct: 580 STW 582 >gi|40253294|dbj|BAD05229.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group] gi|40253611|dbj|BAD05556.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group] Length = 1035 Score = 173 bits (439), Expect = 8e-41, Method: Composition-based stats. Identities = 60/408 (14%), Positives = 114/408 (27%), Gaps = 91/408 (22%) Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + L +GR+ +L + TGR S QN P Sbjct: 704 LCEVFSIDKLISGFIVPLQGDHISCKEGRIHCSLNIN--TETGRLSARTPSLQNQP---- 757 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 L+ +R +A+ G L+VAD +E R+LA + Sbjct: 758 ---------------------ALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTN 796 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L+AF+ G D + T + V + K + Sbjct: 797 CKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEE------------------KKVLLEWHPQ 838 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G + L A NF + + + K W + Sbjct: 839 PGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSQDWNVEVREARDTLKLWHRDR 898 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +S + + E GRS + ++ Sbjct: 899 KEISAWQKKQKALAFEKCEVY--------------------------TLLGRSRQFPNMT 932 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628 + + R VQ + D+ M+ + G+ ++L V Sbjct: 933 H---AGPGQKSHVERAAINAP------VQGSAADVAMCAMLEIERNARLKELGWRLLLQV 983 Query: 629 HDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673 HDE++ E P ++ E +++ M+ + + L + +K + Sbjct: 984 HDEVILEGPTESAEEAKAIVVECMSKPFYGTNILKVDLAVDAKYAKSW 1031 Score = 107 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 79/295 (26%), Gaps = 62/295 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF---------GFDDHPVELWD--CVHDPVM 53 D E + ID+ + VI F+ F + +W + Sbjct: 280 ACDTE-VANIDVKEETP---VGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGGRDV 335 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------ 106 E+ + V HN F+ V++ C I + + T+ LAR Sbjct: 336 LMEFAPFFEDPSIKKVWHNYSFDSHVIENC---GIKVAGFHADTMHLARLWDSSRRADGG 392 Query: 107 SALKAVGEALKLSSQKMEEGKELIA------RFCKGETHECLYDRNKPNHR------EAW 154 +L+ + ++ + +++ + K + E Sbjct: 393 YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDR 452 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWYLDQTIND 194 L+ Y D T ++++ L+ + L + Sbjct: 453 ELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKMET 512 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF 244 G VD A + + VER + + +++ F Sbjct: 513 EGMFVDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFF 567 >gi|30020006|ref|NP_831637.1| DNA polymerase I [Bacillus cereus ATCC 14579] gi|31415758|ref|NP_852498.1| DNA polymerase I [Bacillus phage phBC6A51] gi|29895551|gb|AAP08838.1| DNA polymerase I [Bacillus phage phBC6A51] Length = 802 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 96/759 (12%), Positives = 196/759 (25%), Gaps = 207/759 (27%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---MPQVLKEAL-ENTDVTIVAH 71 + + A + V+ + V D + +L E L +N V +A Sbjct: 137 ICTVSLSAAAHESRVVPISHKV--GQVFEPSMDRDEARKLVLDLLDEYLFKNEKVLKIAV 194 Query: 72 NSYFERTVLKACFNLDIPIHRWICTLVLARS----------NGLPS------ALKAVGEA 115 N FE + + L++ P LK + Sbjct: 195 NLSFETKYAAKYGKYIL--GKVADPLIM-WVRCLQIAAPQKINNPKKPTSGWGLKPATKH 251 Query: 116 L---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + ++ K + F + + + + EY + +I Sbjct: 252 IFGVTMNDFSALLKKYKVNFFDEIDASKGEGLLYSAEDSDYAVQHYEYWSQ---IAAQIS 308 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS- 231 + E L E + + G D LA Q ++ + + + ++ + + Sbjct: 309 RYEEWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETFNI 368 Query: 232 -----SSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNK---------------- 267 S ++K+ +F + + + Q L Sbjct: 369 DINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDMAFMLENKLNDIDEEKYL 428 Query: 268 --------------------------------KLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + P Q + + L Sbjct: 429 GVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQ-KYTTLLS 487 Query: 296 EAMNSDGRL------RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + + R + + TGR + QN+PRP + Sbjct: 488 SHIIGREKYLNFMSGRIHAGYSPFTETGRLNSFNPNGQNVPRPDNDEFK----------- 536 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R+ + GK L D +G E R++AW +G++ + F TG D++ Sbjct: 537 --------------IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMH 582 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + + A++ K +R K + Y G A Q Sbjct: 583 RRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQ-------------------- 622 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + C ++ A + + R+ E ++ Sbjct: 623 ------------------FTFKTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAR 664 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + + G + + + R Sbjct: 665 E--------------------------QGYVQTIYGYMRLLPGINSAN---RRDRGSAER 695 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA-----------GYDIVLTVHDEIVCETPD 638 + VQ + DI+ + ++ D++ +HDEI+ E D Sbjct: 696 QAANTP------VQGSAADIMKKVQNEIYESIGKQEGVLSHGSADMIAQIHDEIIFEIDD 749 Query: 639 TDEFNA---SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 E + +M P +P++AEG R+ Sbjct: 750 DPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEGSVGYRWG 788 >gi|228904297|ref|ZP_04068392.1| DNA polymerase I [Bacillus thuringiensis IBL 4222] gi|228930754|ref|ZP_04093731.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228828844|gb|EEM74504.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228855382|gb|EEM99946.1| DNA polymerase I [Bacillus thuringiensis IBL 4222] Length = 1097 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 95/723 (13%), Positives = 189/723 (26%), Gaps = 197/723 (27%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--------- 52 L +D ET K E + + + H Sbjct: 210 KVLAVDTETTGLDITFKSRTG---EHDECVGLIITGKEGESFYFPFKHTQFDNLCGGDDW 266 Query: 53 --MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT-LVLARSNGL---- 105 M +K LE D+ + HN+ F+ V+ + I ++ I T V + + Sbjct: 267 YFMETYMKPLLEKKDIIV--HNASFDWKVI---YIYGIVLNVVIDTFAVFSLTLNAKYQT 321 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 P LK + +L L +E CK ++ L Y D Sbjct: 322 PVGLKHL-ISLLLKRDSLEL-----DDLCKNGD---FGSIDQNFADLPKELVRLYACADA 372 Query: 166 TVTREIFKRLEPLSS-KEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVE 214 T ++ + + + + Q G V+V L Q +D + Sbjct: 373 DNTLALYHYMLETNMLENWGATKVVQFESIFACAIGYSEFHGQFVNVNETDQLVQDIDRD 432 Query: 215 RTKLDQELESL-----TYGLVSSSRCLEKLKTWLFLETGLHL-----EDLTETTCQRVLS 264 + ++++ + + + + ++ G LT ++ L Sbjct: 433 LQEAERKMRNELRKVNYDADNFNPQSNVEKLKIIYEVFGAPEQYKLDGKLTA--DKKALK 490 Query: 265 SNKK--------LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 + K P F + L E DG + ++ +T Sbjct: 491 NLSKMTNPDDTPKYPFV-NYFQEFNEVNTLRKNFSKNLPEFCTPDGFMFSGVKQFL--KT 547 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S Q +D V+ + G + Sbjct: 548 GRVSISKPNYQ-------------------------------SYNDTVKKYIKPRPGFWM 576 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT-TYARSFNVAPAQVTKDQRAIGKVM 435 D + IE RV+A M+ + ++AF+ Y + + + V+K R K Sbjct: 577 GDMDYSSIEYRVIASMSKQLSLIEAFQDPNTDYHKLQASNMYQIPYELVSKAMRGEAKAF 636 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + + G + G+ + Sbjct: 637 NFGIPFGMGNEKL-------GMTI--------------------------------FGKV 657 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 +++ + + V E + + + Sbjct: 658 SKENTRKATALRERYFKGQDNVREFFVNAQRDAVK------------------------- 692 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 GR Y + + + RQ + +Q + DI + ++ Sbjct: 693 -YGYTETHFGRRRYY---NKETTSVGSIKRQGGNQR----------IQGTAADIYKQAVV 738 Query: 616 ----NATKAGY--DIVL--TVHDEIVCETPDT--DEFNASMLYHLMTSNPSWAKGLPLKA 665 G+ ++L +HDE++ E +L M LK Sbjct: 739 RLFLRIINEGWLDKVLLPGFIHDELLMEVSMEIHPLDWMKVLKEEME----------LKV 788 Query: 666 EGY 668 +G+ Sbjct: 789 DGF 791 >gi|302855051|ref|XP_002959026.1| hypothetical protein VOLCADRAFT_108435 [Volvox carteri f. nagariensis] gi|300255592|gb|EFJ39887.1| hypothetical protein VOLCADRAFT_108435 [Volvox carteri f. nagariensis] Length = 2736 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 69/529 (13%), Positives = 140/529 (26%), Gaps = 133/529 (25%) Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L PL E L + + G + + ++ +L + Sbjct: 2266 LLRPLLEVEMPLVRILAAMEATGVALAPRVLRDQRGPLEARLRQLAHKAHVAAGMT-FDL 2324 Query: 234 RCLEKLKTWLFLETGLHLE--------DLTETT--CQRVLSSNKKLTPQAIQVFNNRMRA 283 + + LF L +T P + + R Sbjct: 2325 NSPKDVSEVLFQHLNLQPPPCAFTSHHQKHPSTKXEVLEELEESTHHPILRYLLDYR-SL 2383 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + TL + G+L G+ A+ TGR S Q +PRP +L Q Sbjct: 2384 HKLLTGFVETL--YSTARGQLCGS-WLHTATATGRLSMDEPNLQTIPRPVEYCFQLSQEE 2440 Query: 344 THLPTSITSDPDPLQI----------------------------------ISDCVRSCVI 369 + T+ + + +R+ + Sbjct: 2441 SPRATTEMAVGVAGAEGQVPPLQPLQPAQGDGGEEAGGGGGGGGCRTVVRMHFNLRNAFV 2500 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-EDLYVTTYARSFNVAPAQVTKDQ 428 A G ++ AD IE R++A +G+ +D + A ++ QVT + Sbjct: 2501 APPGHVILTADYKQIELRLMAHFSGDSALCDLLRNPAQDPFTLLAAEWKRLSVEQVTPEV 2560 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + + Y G L ++ +++ + + + + E Sbjct: 2561 RVQAKRLAYGMLYGMGTSTLAAE-----LGVSVHEAAELSDNFRRAIPGVDRWMKEVVEQ 2615 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 +G R+ R++ ++ ++ Sbjct: 2616 CRSCGYIVTLMGR---------RRYFPRIN------ERSCKEARSQR------------- 2647 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + R +N+ + Q + D Sbjct: 2648 ------------------------AQSERQAINS------------------VCQGSAAD 2665 Query: 609 ILAEGMM----NATKAGY----DIVLTVHDEIVCETPDTDEFNASMLYH 649 ++ M+ + G+ +VL VHDE+V E + L Sbjct: 2666 LVKAAMISLTRRIREEGWAGRARLVLMVHDELVLEVETGLLPAMAALTR 2714 >gi|115304357|ref|YP_762649.1| DNA polymerase [Cyanophage Pf-WMP4] gi|110559071|gb|ABG75891.1| DNA polymerase [Phormidium phage P4] gi|113201851|gb|ABI33163.1| PfWMP4_19 [Phormidium phage Pf-WMP4] Length = 630 Score = 172 bits (437), Expect = 1e-40, Method: Composition-based stats. Identities = 94/692 (13%), Positives = 178/692 (25%), Gaps = 172/692 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 + +D ET + I LF + W VL++ L Sbjct: 4 YIALDLETEQVARMPHGKIHA--------LFLASNNGAEFYPWGLAA----AAVLEKLLT 51 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLS 119 + DV V N+ ++ VL +DIP R++ T+VLA +L++ G + + Sbjct: 52 DPDVIFVIQNAAYDVWVL-RHHGVDIPPGRYVDTMVLAHCVNPQQGDYSLESYGRS--VD 108 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 +K++ E++ E + P + Y DV +T + + L P Sbjct: 109 DEKVDYRTEMVRAGLWEGGKEDPSVYDVPFNPI----MERYGLQDVRLTLKWWGELLPHL 164 Query: 180 SKEQELWYLDQTINDR------------GYCVDVAL-AHTLNQIVDVERTKLDQELESLT 226 ++ D N G +D +++ + Sbjct: 165 E--RDARLADSYYNIHLPAVETTISLHGGLYIDRKATLKAATELMGDIEEGYLEFARRYP 222 Query: 227 YGLVSSSR-----------------------CLEKLKTWLFLETGLHLE---DLTET-TC 259 + + L++ + E + T Sbjct: 223 KVYKMKWNDKTKEYDIVMKGGKPVMTAPNLQSPNDMASLLYMMGWVPTEFKRSTGKPVTS 282 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVL-KLNT----LVEAMNSDGRLRGTLQFLGAS 314 Q VL ++ L + L+E ++ G ++G G + Sbjct: 283 QDVLKLLIADDETPPKLKECATFVQSLRSLVGIQNQLMQLLELVDDKGFVKGNWYQTG-T 341 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374 +T R+S QN VR C G Sbjct: 342 QTFRYSSSSPNMQNFSTRHPK------------------------WGKRVRECFTPPPGY 377 Query: 375 KLVVADLAGIEARVLAWMA----GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ-- 428 + + DL+ IE ++AW G+ + G D + + V + Sbjct: 378 VMFMGDLSQIELAIVAWYLEILAGDSAMAEGNRQGRDAHDVNTENWYGVTRESNPDEFKQ 437 Query: 429 -RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K A Y Sbjct: 438 CRPRAKNGAFAANYG--------------------------------------------A 453 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHS--RVSELWNELHQAFEQTIENGKAIIARKRRD 545 + A + + + + + +L + + + Sbjct: 454 KYRRLAFTIGCSFEEAKDILETVERATQITPLKQLVWDTMRQSRDVL----------PVQ 503 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 VP + K K L L + L Y + + Y ++ + K + Q Sbjct: 504 VPYSWRKTTKGFLYDCLNT--RLFYPGIDSKERYERESSER---------KAFNALAQGG 552 Query: 606 SRDILAE----GMMNATKAGYDIVLTVHDEIV 633 IL + + VHDE + Sbjct: 553 CASILRKLCNQSLPYIQAGEGWFAGLVHDEAI 584 >gi|281413898|ref|ZP_06245640.1| DNA polymerase I [Micrococcus luteus NCTC 2665] Length = 815 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 80/465 (17%), Positives = 147/465 (31%), Gaps = 58/465 (12%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-CFNLDIPI-----HRWICTLVLAR 101 DP + ++EAL + H+ L A + L+ A Sbjct: 384 APDPALVAAVREALGEGGLAKAVHDLKRTLKALAAPTEGDGLGPDAALDGVVDDVLLSAY 443 Query: 102 SNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 +L+A+ EA + + ++ Sbjct: 444 LIQPDRRDTSLEALAEAHLHTPLAAPREPAQQRAQGTFDLDGGQAAADRAARAADAVRAA 503 Query: 159 EYCKGDVTV-TREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVER 215 + T T ++ R +E E+ L + G VDV L + Sbjct: 504 WVVRRLSTQFTPQVLDRGAQRLLQELEIPLSRLLARMELAGIAVDVDALTDLREDFTAAA 563 Query: 216 TKLDQELE----SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK 268 + T G+ + ++L+ LF + T+ +T L + Sbjct: 564 DAAKESAWASVAEETGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLE 623 Query: 269 L--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 P + +R A++ + L+E + D R+ T A+ TGR S Sbjct: 624 QTRHPFLENLMAHR-DATKLRQT-VEGLLETVAPDDRIHTTYSQ-TAAATGRLSSLHPNL 680 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE--GK--KLVVADLA 382 QN+P + + +R +A E G+ L+ AD + Sbjct: 681 QNIPVRTEAGRR-------------------------IREVFVADEVAGEQAVLLSADYS 715 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++ ++ ++AF GEDL+ ++ F V P +VT +QRA K M L Y Sbjct: 716 QIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAYG 775 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 + L ++ + + Q+ Sbjct: 776 -----LSSFGLSKQLKISVDEARGLMKGYFDRFGGVPEELIPYQD 815 >gi|222640002|gb|EEE68134.1| hypothetical protein OsJ_26228 [Oryza sativa Japonica Group] Length = 982 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 60/408 (14%), Positives = 114/408 (27%), Gaps = 91/408 (22%) Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + L +GR+ +L + TGR S QN P Sbjct: 651 LCEVFSIDKLISGFIVPLQGDHISCKEGRIHCSLNIN--TETGRLSARTPSLQNQP---- 704 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 L+ +R +A+ G L+VAD +E R+LA + Sbjct: 705 ---------------------ALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTN 743 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L+AF+ G D + T + V + K + Sbjct: 744 CKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEE------------------KKVLLEWHPQ 785 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G + L A NF + + + K W + Sbjct: 786 PGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSQDWNVEVREARDTLKLWHRDR 845 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +S + + E GRS + ++ Sbjct: 846 KEISAWQKKQKALAFEKCEVY--------------------------TLLGRSRQFPNMT 879 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628 + + R VQ + D+ M+ + G+ ++L V Sbjct: 880 H---AGPGQKSHVERAAINAP------VQGSAADVAMCAMLEIERNARLKELGWRLLLQV 930 Query: 629 HDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673 HDE++ E P ++ E +++ M+ + + L + +K + Sbjct: 931 HDEVILEGPTESAEEAKAIVVECMSKPFYGTNILKVDLAVDAKYAKSW 978 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 79/295 (26%), Gaps = 62/295 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF---------GFDDHPVELWD--CVHDPVM 53 D E + ID+ + VI F+ F + +W + Sbjct: 227 ACDTE-VANIDVKEETP---VGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGGRDV 282 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------ 106 E+ + V HN F+ V++ C I + + T+ LAR Sbjct: 283 LMEFAPFFEDPSIKKVWHNYSFDSHVIENC---GIKVAGFHADTMHLARLWDSSRRADGG 339 Query: 107 SALKAVGEALKLSSQKMEEGKELIA------RFCKGETHECLYDRNKPNHR------EAW 154 +L+ + ++ + +++ + K + E Sbjct: 340 YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDR 399 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWYLDQTIND 194 L+ Y D T ++++ L+ + L + Sbjct: 400 ELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKMET 459 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF 244 G VD A + + VER + + +++ F Sbjct: 460 EGMFVDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFF 514 >gi|75759443|ref|ZP_00739536.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493056|gb|EAO56179.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 1015 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 95/723 (13%), Positives = 189/723 (26%), Gaps = 197/723 (27%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--------- 52 L +D ET K E + + + H Sbjct: 128 KVLAVDTETTGLDITFKSRTG---EHDECVGLIITGKEGESFYFPFKHTQFDNLCGGDDW 184 Query: 53 --MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT-LVLARSNGL---- 105 M +K LE D+ + HN+ F+ V+ + I ++ I T V + + Sbjct: 185 YFMETYMKPLLEKKDIIV--HNASFDWKVI---YIYGIVLNVVIDTFAVFSLTLNAKYQT 239 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 P LK + +L L +E CK ++ L Y D Sbjct: 240 PVGLKHL-ISLLLKRDSLEL-----DDLCKNGD---FGSIDQNFADLPKELVRLYACADA 290 Query: 166 TVTREIFKRLEPLSS-KEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVE 214 T ++ + + + + Q G V+V L Q +D + Sbjct: 291 DNTLALYHYMLETNMLENWGATKVVQFESIFACAIGYSEFHGQFVNVNETDQLVQDIDRD 350 Query: 215 RTKLDQELESL-----TYGLVSSSRCLEKLKTWLFLETGLHL-----EDLTETTCQRVLS 264 + ++++ + + + + ++ G LT ++ L Sbjct: 351 LQEAERKMRNELRKVNYDADNFNPQSNVEKLKIIYEVFGAPEQYKLDGKLTA--DKKALK 408 Query: 265 SNKK--------LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 + K P F + L E DG + ++ +T Sbjct: 409 NLSKMTNPDDTPKYPFV-NYFQEFNEVNTLRKNFSKNLPEFCTPDGFMFSGVKQFL--KT 465 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S Q +D V+ + G + Sbjct: 466 GRVSISKPNYQ-------------------------------SYNDTVKKYIKPRPGFWM 494 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT-TYARSFNVAPAQVTKDQRAIGKVM 435 D + IE RV+A M+ + ++AF+ Y + + + V+K R K Sbjct: 495 GDMDYSSIEYRVIASMSKQLSLIEAFQDPNTDYHKLQASNMYQIPYELVSKAMRGEAKAF 554 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + + G + G+ + Sbjct: 555 NFGIPFGMGNEKL-------GMTI--------------------------------FGKV 575 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 +++ + + V E + + + Sbjct: 576 SKENTRKATALRERYFKGQDNVREFFVNAQRDAVK------------------------- 610 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 GR Y + + + RQ + +Q + DI + ++ Sbjct: 611 -YGYTETHFGRRRYY---NKETTSVGSIKRQGGNQR----------IQGTAADIYKQAVV 656 Query: 616 ----NATKAGY--DIVL--TVHDEIVCETPDT--DEFNASMLYHLMTSNPSWAKGLPLKA 665 G+ ++L +HDE++ E +L M LK Sbjct: 657 RLFLRIINEGWLDKVLLPGFIHDELLMEVSMEIHPLDWMKVLKEEME----------LKV 706 Query: 666 EGY 668 +G+ Sbjct: 707 DGF 709 >gi|323443495|gb|EGB01111.1| phage related DNA polymerase family A [Staphylococcus aureus O46] Length = 225 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 76/271 (28%), Positives = 108/271 (39%), Gaps = 58/271 (21%) Query: 416 SFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 FNV +TK GKV ELALGYQGGA A + M Sbjct: 1 MFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG--------------------- 39 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 A+E + + +WR + + W +A T++ Sbjct: 40 -------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVK 80 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTT--------T 584 + K R K L++ LPSGR+L Y S+ + Sbjct: 81 SRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLN 134 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644 R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHDE++ E P Sbjct: 135 RKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGS-NGL 193 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + +M WAKGL L ++G+ S Y K Sbjct: 194 KEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 224 >gi|224117482|ref|XP_002317586.1| predicted protein [Populus trichocarpa] gi|222860651|gb|EEE98198.1| predicted protein [Populus trichocarpa] Length = 834 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 90/779 (11%), Positives = 201/779 (25%), Gaps = 129/779 (16%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DCVHDP--VMPQ 55 D E + + + + F+ F + +W D + + Sbjct: 71 ACDTE----VAKIEVKEETPIDHGEITCFSIYSGPEADFGNGKSCIWVDVLDGGGRDLLH 126 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------SA 108 E+ D+ V HN F+ V++ I + + T+ +AR + Sbjct: 127 EFAPFFESPDIKKVWHNYSFDNHVIENY---GISVSGFHADTMHMARLWDSSRRINGGYS 183 Query: 109 LKAVGEALKLSSQKMEEGKELIARFC-------KGETHECLYDRNKPNHREA------WR 155 L+A+ K+ KELI + K + + Sbjct: 184 LEALTGDQKVMRGAEPCYKELIGKVSMKNIFGKKKVKKDGSEGKLTTIAPVEELQREARE 243 Query: 156 LFGEYCKGDVTVTREIFK----------------------RLEPLSSKEQELWYLDQTIN 193 + Y D T +++K + Q + + Sbjct: 244 PWICYSALDAISTLQLYKSLESQLSKMPWNMDGKPVLKKSMFDFYLEYWQPFGEILVRME 303 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLFLET- 247 G VD A ++ E+ + +L+ LF Sbjct: 304 TEGMLVDRAYLAVTEKVAKAEQEVAASRFRKWASRYCPDAKYMNVGSDTQLRQLLFGGIC 363 Query: 248 -------GLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 L + +V+ KK + + +R + +++ Sbjct: 364 NSKDPLVTLPEVKTFKVPNVDKVIEEGKKTPTKFCDIKLCSIRVDLPVETYTASGWPSVS 423 Query: 300 SD------GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 D ++ A+ + + + +EL + + + Sbjct: 424 GDALKTLARKISSEYVVNDAAGSQLDDVVFDDSETMTDEDLESKELSVVENEDESGHVGN 483 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK-------AFETGE 406 Q + + +C S +L D + I +L + T Sbjct: 484 LRRFQTPEEGIEACHAISSLCELCSID-SLISNFILPLQSSNLSGKSGRVHCSLNINTET 542 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIG-----KVMELALGYQGGAKAFQKMASTTGLNLNT 461 N + + + + Y + L+ Sbjct: 543 GRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRVLAHLANCKSMLDA 602 Query: 462 FAH------------LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER---- 505 F A E+ + E+ P + + + Sbjct: 603 FKAGGDFHSRTAVNMYPHIREAIEKKRVLLEWYPQPGEDKPPVPLLKDAFASERRKAKML 662 Query: 506 -VKKAWRQKHSRVSELWNELHQAFEQTIE-NGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 A+ + +S W ++T+ K + ++ + Sbjct: 663 NFSIAYGKTPVGLSRDWKVSVAEAKETVNLWYKERKEVLKWQQARKKEAREDG--RVHTL 720 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---- 619 GR+ V+ + + S L R VQ + D+ M+ +K Sbjct: 721 LGRARVFPSLTDASSSLRGHV---ERAAINTP------VQGSAADVAMCAMLEISKNNRL 771 Query: 620 --AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673 G+ ++L VHDE++ E P ++ E +++ M+ + L + ++ + Sbjct: 772 KELGWKLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPFGGKNFLKVDLAVDAKCAQNW 830 >gi|219111043|ref|XP_002177273.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1] gi|217411808|gb|EEC51736.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1] Length = 774 Score = 171 bits (433), Expect = 4e-40, Method: Composition-based stats. Identities = 67/394 (17%), Positives = 115/394 (29%), Gaps = 96/394 (24%) Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 L +L E +++ R+ +L + TGR S QN P Sbjct: 457 TFLTSLQERVDNKSRVHCSLNLN--TETGRLSSRGPNLQNQP------------------ 496 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 L+ + +R AS G L+VAD +E R+LA M G + ++AFE G D Sbjct: 497 -------ALEKDTYQIRKAFEASPGNNLIVADYGQLELRLLASMTGCKSMIEAFEAGGDF 549 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + T F+ +A E L + + Sbjct: 550 HSRTAMDMFD--------YVKAKVDSGEALLEW------------DYAKGDPPKPLVKDL 589 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 ++ NF + + + E + KAW + V ++ Sbjct: 590 FASERRKAKTLNFSIAYGKTAFGLSDDWGVTLQEAEEMLKAWYKARPEVDVWQTQVKLTA 649 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 + GR + + R +Q Sbjct: 650 RN--------------------------HGYTRTLMGRYRDLPEAKSKRQK---FAKQAE 680 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT-DE 641 R +Q + DI M G+ ++L VHDE++ E P+ + Sbjct: 681 RASINTP------IQGGAADIAMMAMNKINANEKLKALGWILLLQVHDEVMLEGPEETAK 734 Query: 642 FNASMLYHLMTSNPSWAKG-----LPLKAEGYES 670 + + M W G +PL +G + Sbjct: 735 EAFDEVLNNMQEP--WVFGLMKTAVPLLVDGSYT 766 >gi|218195671|gb|EEC78098.1| hypothetical protein OsI_17597 [Oryza sativa Indica Group] Length = 1032 Score = 171 bits (432), Expect = 5e-40, Method: Composition-based stats. Identities = 62/408 (15%), Positives = 116/408 (28%), Gaps = 91/408 (22%) Query: 277 FNNRMRASRSAVLKLNTLV-EAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + L + +GR+ +L + TGR S QN P Sbjct: 701 LCEICSIDSLISNFILPLQGNHISCDEGRIHCSLNIN--TETGRLSARTPNLQNQP---- 754 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 L+ +R +A+ G L+VAD +E R+LA +A Sbjct: 755 ---------------------ALEKDRYKIRQAFVAAPGNSLIVADYGQLELRILAHLAS 793 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L AF+ G D + T + V + K + Sbjct: 794 CKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEE------------------KKVLLEWHPQ 835 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G L A NF + A + + K W + Sbjct: 836 PGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLWYRDR 895 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + + ++ E GRS + ++ Sbjct: 896 KEVLAWQMKQKELAQEKCEVY--------------------------TLLGRSRRFPNMA 929 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628 + S + R VQ + D+ M+ + G+ ++L V Sbjct: 930 HATSGQRGH---IERAAINAP------VQGSAADVAMCAMLEIDRNARLKELGWRLLLQV 980 Query: 629 HDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673 HDE++ E P ++ + S++ M+ + + L + ++ + Sbjct: 981 HDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELAVDAKCAQNW 1028 Score = 104 bits (258), Expect = 7e-20, Method: Composition-based stats. Identities = 34/310 (10%), Positives = 75/310 (24%), Gaps = 68/310 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF---------GFDDHPVELWD--CVHDPVM 53 D E + VI F+ F + +W + Sbjct: 285 ACDTE----VANIDVKQETPVSHGEVICFSIYSGNSDAEADFGNGKTCIWVDVLDGGRDV 340 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------ 106 E+ + V HN F+ V++ I + + T+ LAR Sbjct: 341 LMEFAPFFEDPSIRKVWHNYSFDSHVIENY---GIKVAGFHADTMHLARLWDSSRRIDGG 397 Query: 107 SALKAVGEALK----LSSQKMEEGKELIARFC--KGETHECLYDRNKPNHRE------AW 154 +L+ + + + + + GK + K + + Sbjct: 398 YSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDGSAGKIISMEPVEVLQRDDR 457 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWYLDQTIND 194 ++ Y D T +++ L+ + L + Sbjct: 458 EMWICYSSLDSMSTLRLYESLKSKLEKKHWTFDGCPRGSMYDFYEEYWRPFGALLVKMET 517 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF----- 244 G VD + ++ +R + + +++ F Sbjct: 518 AGMLVDRGYLSEIEKVAVAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIEN 577 Query: 245 -LETGLHLED 253 + G L Sbjct: 578 RCKPGETLPK 587 >gi|47215759|emb|CAG05770.1| unnamed protein product [Tetraodon nigroviridis] Length = 462 Score = 171 bits (432), Expect = 5e-40, Method: Composition-based stats. Identities = 53/491 (10%), Positives = 125/491 (25%), Gaps = 111/491 (22%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E + + + VD + ++ + +L+QE + Sbjct: 14 YTDMELNMIPVLAVMESHHIHVDKEALKRTSDLLGTKMKQLEQEAHRAAG-EIFLITSNT 72 Query: 238 KLKTWLFLET-------GLHLED---LTETTCQ------RVLSSNKKLTPQAIQVFNNRM 281 +L+ LF L ++T + + L + L P + R Sbjct: 73 QLRAVLFERLRLHQQCENKKLPKTLNKQQSTSEAAVQYLKRLLQLQDLHPLPKIILEYRQ 132 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ ++ M + Q L ++ R G + + Sbjct: 133 -VHKIKSTSVDGILSCMRNKNFQALPRQPLQITKQQRVQGKEEVVVKVHPREMFIPQEGW 191 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 R I EG V AD +E R+LA + + L+ Sbjct: 192 TFVAAGKEEVVVKVHP-------REMFIPQEGWTFVAADFCQVELRLLAHFSSDPELLRI 244 Query: 402 FETGEDL-YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F + + ++ ++ ++VT + R K + Sbjct: 245 FNHPQSDVFTMLASQWKGLSQSEVTSEDREHAKRIV------------------------ 280 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + ++ + + V Sbjct: 281 --------------------YSVVYGAGRERLSGILGVSAKQASQFQDSFLRAYKDVQAF 320 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + +Q + G + GR ++ + + Sbjct: 321 ---IQKTIQQCHQQGCVLSL-----------------------MGRRRTLPNIHLSDWAV 354 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 Q R+ +VQ + D+ M+ ++ +HDE++ Sbjct: 355 R---MQAERQA------VNFVVQGSAADLCKMAMIRIFNLVSSSSCSARLLAQLHDELLF 405 Query: 635 ETPDTDEFNAS 645 E D + Sbjct: 406 EVEDNQVHRFA 416 >gi|225388911|ref|ZP_03758635.1| hypothetical protein CLOSTASPAR_02651 [Clostridium asparagiforme DSM 15981] gi|225045020|gb|EEG55266.1| hypothetical protein CLOSTASPAR_02651 [Clostridium asparagiforme DSM 15981] Length = 711 Score = 170 bits (431), Expect = 6e-40, Method: Composition-based stats. Identities = 54/325 (16%), Positives = 92/325 (28%), Gaps = 52/325 (16%) Query: 83 CFNLDIPIHRWICTLVLARSNGL---PSALKAVGEA---LKLSSQKMEEGKELIARFCKG 136 ++ V + L + S+ GK Sbjct: 423 YLDIPYD-GPVFDAGVAGYLLNPLKDSYGYDDLARDFLGLTVPSRADLLGK--------- 472 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTV--TREIFKRLEPLSSKEQELWYL--DQTI 192 K + + Y T + + E E+ + ++ Sbjct: 473 -QSLGDALWMKDPKAVSCACYMGYVAMKAAAPLTERLKQTGMYQLFIEIEMPLIYSLSSM 531 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G V+ + V+ L+QE+ T + ++L LF + L Sbjct: 532 EQAGVKVEREELKEYGSRLKVQIDVLEQEIYRDTG-KEFNINSPKQLGEILFGDMALPGG 590 Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T+ +T VL P ++ + R ++ L + SDGR+ G Sbjct: 591 KKTKTGYSTAADVLEKLAPDYPVVQKILDYRQ-LTKLYSTYAEGLAAFIGSDGRIHGKFN 649 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 + TGR S QN+P E +R + Sbjct: 650 Q-TITATGRISSTEPNLQNIPVRMELGRE-------------------------IRKVFV 683 Query: 370 ASEGKKLVVADLAGIEARVLAWMAG 394 EG V AD + IE R+LA M+G Sbjct: 684 PREGSVFVDADYSQIELRILAHMSG 708 >gi|224126389|ref|XP_002319826.1| predicted protein [Populus trichocarpa] gi|222858202|gb|EEE95749.1| predicted protein [Populus trichocarpa] Length = 834 Score = 170 bits (431), Expect = 7e-40, Method: Composition-based stats. Identities = 62/408 (15%), Positives = 116/408 (28%), Gaps = 91/408 (22%) Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + L + GR+ +L + TGR S QN P Sbjct: 503 LCEVCSIDSLISNFILPLQSSDISGKGGRVHCSLNIN--TETGRLSARRPNLQNQP---- 556 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 L+ +R IA+ G L+VAD +E R+LA +A Sbjct: 557 ---------------------ALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLAN 595 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L AF+ G D + T + + K Q + Sbjct: 596 CKSMLDAFKAGGDFHSRTAMNMYPHIREAIEKKQV------------------LLEWYPQ 637 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G N L ++ NF + + + + W ++ Sbjct: 638 PGENKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLSRDWKVSVAEAKETVNLWYKER 697 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + + + N + GR+ V+ + Sbjct: 698 KEVLKWQQARKKEARE--------------------------NGRVYTLLGRARVFPSLT 731 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTV 628 + S L R VQ + D+ M+ + G+ ++L V Sbjct: 732 DASSSLRGHV---ERAAINTP------VQGSAADVAMCAMLEISKNTRLQELGWKLLLQV 782 Query: 629 HDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673 HDE++ E P ++ E +++ M+ + L + ++ + Sbjct: 783 HDEVILEGPTESAEVAKAIVVGCMSKPFGGKNFLNVDLAVDSKCAQNW 830 >gi|284006861|emb|CBA72127.1| phage DNA polymerase [Arsenophonus nasoniae] Length = 181 Score = 170 bits (430), Expect = 7e-40, Method: Composition-based stats. Identities = 62/175 (35%), Positives = 91/175 (52%), Gaps = 5/175 (2%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 LF D ET S I + CG +YAE+ ++LFA+ ++ PV++WD D MP LK L++ Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYSYNHGPVKVWDVTQDKTMPTDLKAYLDD 63 Query: 64 TDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL--SS 120 ++ V HN F+ +L N+D+P+ R TLV A ++GLP AL ++ + + Sbjct: 64 PEILTVWHNGGMFDTVILSKVLNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 123 Query: 121 QKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKR 174 K +EGK LI FCK R H E W F Y D+ REI++ Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQH 178 >gi|94961603|gb|ABF48183.1| family A DNA polymerase [Trichococcus patagoniensis] Length = 241 Score = 170 bits (430), Expect = 8e-40, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 91/275 (33%), Gaps = 38/275 (13%) Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL + P + N R ++ + L++ + + T ++TG Sbjct: 1 TAVDVLEKLQAQAPIVEHILNYRQ-LAKLQSTYVEGLLKFIKPETGKIHTRYQQTLTQTG 59 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKL 376 R S QN+P + +R + EG KL Sbjct: 60 RLSSVDPNLQNIPIRMEEGRK-------------------------IRQAFVPQQEGWKL 94 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVM 435 +D + IE RVLA ++G++ +AF G+D++ +T F + P VT + R K + Sbjct: 95 FASDYSQIELRVLAHISGDEHLREAFLEGQDIHTSTAMHVFGIENPEDVTANLRRQAKAV 154 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + Y + LN+ A + +++ + F + + E+ Sbjct: 155 NFGVVYGIS-----DYGLSQNLNITRKAAQEFIDRYFDKYPGVKQFMEDIVKEAKENGYV 209 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + R ++ + + Sbjct: 210 ETLFHR--RRYLPDIHNRNFNLRSF---AERTAIN 239 >gi|307700631|ref|ZP_07637659.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] gi|307614161|gb|EFN93402.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] Length = 240 Score = 170 bits (430), Expect = 9e-40, Method: Composition-based stats. Identities = 79/285 (27%), Positives = 116/285 (40%), Gaps = 57/285 (20%) Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F+ GEDLY T + F V + + R GK+ LA GY G A + M Sbjct: 1 FKNGEDLYCATASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMG------- 53 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A++ + + AWR + + + Sbjct: 54 ---------------------------------ALKMGLSKDELQPIVDAWRAANPNIVQ 80 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR 577 LW+++ A + I G + R + +K L + LPSGR L Y +G NR Sbjct: 81 LWHDVDNAATRAISTGSPVTLR------NLGFEKKSGMLFINLPSGRRLAYVKPGIGMNR 134 Query: 578 SYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + T R+ + TYGGKL ENIVQA +RD+L E + AG IV+ +HD Sbjct: 135 FGGTSITYWGQGVARKWQKLETYGGKLVENIVQATARDLLVEDITRIENAGNRIVMHIHD 194 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E+V + P + + L+ P GLP+ A GYE Y+K Sbjct: 195 EVVIDEPINSGITVADICALLNELPERTAGLPIDAAGYECGFYQK 239 >gi|20095249|gb|AAL85287.2|AF465603_1 polymerase [Vibrio phage 1] Length = 786 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 86/600 (14%), Positives = 175/600 (29%), Gaps = 102/600 (17%) Query: 9 ETRSPI----DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-------L 57 ET P+ DL G ++D ++ F + +L P+ + Sbjct: 147 ETGKPVRVAGDLETVGFDYVSKDRFIVSAQFSHREGYSDLVRFYSTEDQPKEGDLLHDQI 206 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 K L + V + N ++ +K +N++ + T ++ + ++ K Sbjct: 207 KWLLNSEMVIMCGANFKYDLNWIKYKWNIECTNFKL-DTTLVGSLLNENRS-NSLNTHAK 264 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L + +L + KG Y GD T + Sbjct: 265 LFTDLGGYDDDLNNIYDKGR-----------MDLIPDENLLPYAGGDTDATLRVRNHFAR 313 Query: 178 LSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL- 225 ++ + + G V+ TL + ++ E+ + +E+ + Sbjct: 314 ELQQDPWLTNFYVNLLHPASRAFEKMEQNGVKVNGEKLKTLGEELEQEKNQYLREMVDMM 373 Query: 226 --TYGLVSSSRCL----EKLKTWLFLETGL-------HLEDLTETTCQRVLS--SNKKLT 270 T K +LF GL + ++ T + L+ + K Sbjct: 374 PATACPEVPEAKPVIKAAIGKDYLFGARGLGLKPIMVNEKNKEPLTNKSHLNNFDDPKKY 433 Query: 271 PQAIQVFNN---RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA------------SR 315 P+A + +A ++ + DG + + Sbjct: 434 PEAHKFIQLGNKWNQADKAQGTYCTGFLRHQREDGYFHPSYMLFKGAFDNDKGTDDSGTV 493 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR + Q LP+ + ++ +R+C EG Sbjct: 494 TGRLAAKDPAIQTLPKKT-------------------------SLAKRLRACYEPPEGYS 528 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV----------T 425 +V D + E R L MA E KA+ G DL+V + + ++ Q+ Sbjct: 529 IVEIDFSQGELRRLCGMANEPAMKKAYREGLDLHVISGGATAGLSYEQMQELEKTDAALY 588 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 K R GK L Y FQ+ A G+ L+ + + + ++ Sbjct: 589 KKYRNYGKPQNFGLLYGMSWGGFQQYAKDQYGVLLSDKEAQNMRFNFFDTYARLPDWHEE 648 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 +E + +G + ++ + T+ + + R Sbjct: 649 TKEFARVNGYIRSPLGRVRHLPLINSFDNFYKSQAERQAVNSGVQSTLSDLLIYGMARFR 708 >gi|3510695|gb|AAC33565.1| DNA polymerase theta [Homo sapiens] Length = 1762 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 95/776 (12%), Positives = 189/776 (24%), Gaps = 213/776 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74 +D V+ A + + + +P L +L D + Sbjct: 1067 CDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1126 Query: 75 ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117 ++ +L + + + V S L ++ + Sbjct: 1127 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 1185 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + EG E + + L + + + Sbjct: 1186 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 1244 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E Y + G A + I+ + ++ + L S + Sbjct: 1245 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 1303 Query: 238 KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270 + LFLE L ++ + +T + VL+ K L Sbjct: 1304 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 1363 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325 P + R + + + L + R+ Q A+ GR + Sbjct: 1364 PLPGLILEWRRITN-AITKVVFPLQREKCLNPFLGMERIYPVSQSHTAT--GRITFTEPN 1420 Query: 326 PQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358 QN+PR + + D Sbjct: 1421 IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGM 1480 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 S +R + G ++ AD + +E R+LA ++ ++ ++ TG D++ + A Sbjct: 1481 PFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKM 1540 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 + P V D R K + + Y GAK+ + + + +S + Sbjct: 1541 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 1595 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 F +N +G R+ + + Sbjct: 1596 NQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------- 1627 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 + YR R +NT Sbjct: 1628 ----------------------------NNPYRKAHAERQAINT---------------- 1643 Query: 599 ENIVQAVSRDILAEGMMNATK--------------------------------------- 619 IVQ + DI+ +N K Sbjct: 1644 --IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPI 1701 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M S + LK + + Sbjct: 1702 RGGFFILQLHDELLYEVVEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 1755 >gi|13892061|gb|AAK39635.1| DNA polymerase theta [Homo sapiens] Length = 2724 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 95/776 (12%), Positives = 189/776 (24%), Gaps = 213/776 (27%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74 +D V+ A + + + +P L +L D + Sbjct: 2029 CDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 2088 Query: 75 ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117 ++ +L + + + V S L ++ + Sbjct: 2089 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 2147 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + EG E + + L + + + Sbjct: 2148 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 2206 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E Y + G A + I+ + ++ + L S + Sbjct: 2207 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 2265 Query: 238 KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270 + LFLE L ++ + +T + VL+ K L Sbjct: 2266 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 2325 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325 P + R + + + L + R+ Q A+ GR + Sbjct: 2326 PLPGLILEWRRITN-AITKVVFPLQREKCLNPFLGMERIYPVSQSHTAT--GRITFTEPN 2382 Query: 326 PQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358 QN+PR + + D Sbjct: 2383 IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGM 2442 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 S +R + G ++ AD + +E R+LA ++ ++ ++ TG D++ + A Sbjct: 2443 PFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKM 2502 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 + P V D R K + + Y GAK+ + + + +S + Sbjct: 2503 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 2557 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 F +N +G R+ + + Sbjct: 2558 NQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------- 2589 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 + YR R +NT Sbjct: 2590 ----------------------------NNPYRKAHAERQAINT---------------- 2605 Query: 599 ENIVQAVSRDILAEGMMNATK--------------------------------------- 619 IVQ + DI+ +N K Sbjct: 2606 --IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPI 2663 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 G +L +HDE++ E + D + + M S + LK + + Sbjct: 2664 RGGFFILQLHDELLYEVVEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2717 >gi|294890673|ref|XP_002773257.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983] gi|239878309|gb|EER05073.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983] Length = 643 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 83/539 (15%), Positives = 151/539 (28%), Gaps = 149/539 (27%) Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 +E + L ++ G D ++ ++V KL++E ++L V + Sbjct: 201 LFQELPVARLLTLMSVTGAPFDHSIMQRWRSDLEVTVAKLEREAQALVKKEVLM-TSPAQ 259 Query: 239 LKTWLFLETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN---- 292 + L+ + GL + +T VLS P + +R ++ ++ Sbjct: 260 VAALLYDDLGLQPPAGRRSRSTGDEVLSMMVDQHPVVSIIRKHRQ-VAKLITTYVDTIRS 318 Query: 293 --------TLVEAMNSDGRLRGTLQFLG-----------ASRTGRWSGCVFPPQNLPRPS 333 L+E + + FLG + TGR S QN+PR Sbjct: 319 LPESSPKPGLLEYFRPQNGVSESCNFLGKNRLYTVWNQTMTVTGRLSSSNPNLQNIPRSH 378 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS--EGKKLVVADLAGIEARVLAW 391 + +R I+ + LV D +E RVLA Sbjct: 379 E---------------------FEDLGVISLRKAFISPILDSHCLVSVDYRQVEIRVLAH 417 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSF-NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 G ++F T A A VTK++R KV LAL Y G Sbjct: 418 FVGPGALRRSFSVDGADIYTNMAAMILRKAANDVTKEERNKAKVCCLALVYGSGIHLL-- 475 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 + + + K+ + Sbjct: 476 --------------------------------------ARQMGVTTTV----AQGFKRQF 493 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + A + + I ++RR + L Sbjct: 494 NYAFPELERWMVRVWHAAK--GKKYVETICKRRRKIELDG-------------------- 531 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYD--- 623 T + R +I+Q + DI+ M+ +A + Sbjct: 532 ----------GELTSEAKRFCI------NSIIQGSAADIMKSAMVQIAHALDEAQWKRGR 575 Query: 624 --IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKG----LPLKAEGYESKRY 673 ++L++HDE V D +L M + P + +PL+ + Sbjct: 576 PQLLLSIHDEFVLSCHQEDVERLGRLLLREMRNPALPGHDEDDPFSVPLEVSMKYGHNW 634 >gi|222629638|gb|EEE61770.1| hypothetical protein OsJ_16332 [Oryza sativa Japonica Group] Length = 885 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 80/766 (10%), Positives = 198/766 (25%), Gaps = 119/766 (15%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF---------GFDDHPVELWD--CVHDPVM 53 D E + VI F+ F + +W + Sbjct: 138 ACDTE----VANIDVKQETPVSHGEVICFSIYSGNSDAEADFGNGKTCIWVDVLDGGRDV 193 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------ 106 E+ + V HN F+ V++ I + + T+ LAR Sbjct: 194 LMEFAPFFEDPSIRKVWHNYSFDSHVIENY---GIKVAGFHADTMHLARLWDSSRRIDGG 250 Query: 107 SALKAVGEALK----LSSQKMEEGKELIARFC--KGETHECLYDRNKPNHRE------AW 154 +L+ + + + + + GK + K + + Sbjct: 251 YSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDGSAGKIISMEPVEVLQRDDR 310 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWYLDQTIND 194 ++ Y D T +++ L+ + L + Sbjct: 311 EMWICYSSLDSMSTLRLYESLKSKLEKKHWTFDGCPRGSMYDFYEEYWRPFGALLVKMET 370 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF----- 244 G VD + ++ +R + + +++ F Sbjct: 371 AGMLVDRGYLSEIEKVAVAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIEN 430 Query: 245 -LETGLHLED--LTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 + G L + +++ KK + + ++ + + Sbjct: 431 RCKPGETLPKSRTIKVPNDGSLIAEGKKTPKYCTIELFSIVEDLKTDLFTASGWPSVSGD 490 Query: 301 -----DGRLRGTLQFLG-ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 G+L L + +L + + Sbjct: 491 ALRSLAGKLPTDLVYTTDDVEDDDSGDSEISEHDLNDTASYGTAYEAFGGGKKGKEACHA 550 Query: 355 DPLQ----IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I + + ++ +G + D I + + + + Sbjct: 551 IAALCEICSIDSLISNFILPLQGNH-ISCDEGRIHCSLNINTETGRLSARTPNLQNQPAL 609 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN-----TFAHL 465 A + + +L L + + M + Sbjct: 610 EKDRYKIRQAFVAAPGNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMY 669 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER-----VKKAWRQKHSRVSEL 520 A EE + + + P + G + A+ + ++ Sbjct: 670 QHIRDAVEEKKVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARD 729 Query: 521 WNELHQAFEQTIE----NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 W + + T++ + K ++A + + L K + + GRS + ++ + Sbjct: 730 WKVSVKEAKDTLKLWYRDRKEVLAWQMKQKELAQEKCE-----VYTLLGRSRRFPNMAHA 784 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630 S + R VQ + D+ M+ + G+ ++L VHD Sbjct: 785 TSGQRGH---IERAAINAP------VQGSAADVAMCAMLEIDRNARLKELGWRLLLQVHD 835 Query: 631 EIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673 E++ E P ++ + S++ M+ + + L + ++ + Sbjct: 836 EVILEGPTESADLAKSIVVECMSKPFYGTNILNVELAVDAKCAQNW 881 >gi|321475795|gb|EFX86757.1| hypothetical protein DAPPUDRAFT_312857 [Daphnia pulex] Length = 1781 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 72/677 (10%), Positives = 160/677 (23%), Gaps = 158/677 (23%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQ-----VLKEALENTDVTIVAHNSYFER 77 Y E ++ A + V LK LE V ++ Sbjct: 1213 YKEKNSILGVAVAWSCLCVNYIQLRERFDSNLDLAKVSKLKSWLEALIRLKVEF-IVYDI 1271 Query: 78 TVLKACFNLDIPIHRWICTLVLARSNGLPSALK-AVGEALKLSSQKMEEGKELIARFCKG 136 D+ + + + L S +L + + Sbjct: 1272 ----RSTANDLRP-------LFHHLLNEMLFRDVDLCQWLLEPSNSSVSLPKLSKMYSQQ 1320 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL------EPLSSKEQELWYLDQ 190 + +Y C + + ++ +RL +P E + Sbjct: 1321 GSPTKMYR--------GREKILHECCALLDIFHQLKQRLSKEELLQPFVDVEMPMVATML 1372 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT-----WLFL 245 + G D + + QI+ L++ L S +++ L + Sbjct: 1373 RMEQIGIAFDRSNCELILQILRNHLKMLEEAAHRLAG-RSFSLTSTKEVSKIVASLNLCI 1431 Query: 246 ETGLH-------LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE- 296 E + + + L ++ P V R ++ + L Sbjct: 1432 EEKNPQSFINPLKKKFQPLSVSKASLIKLGRIHPLPRVVVEFRKVSAIIQTIICPLLQAS 1491 Query: 297 --AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ R+ G +F A+ GR + Q++PRP Sbjct: 1492 TFHVSGVERIAGECEFRNAT--GRVNIVQPNLQHIPRP---------------------F 1528 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 VRS A+ G L+ AD + +E R+LA ++ + Sbjct: 1529 SLSDGRMINVRSAFHAATGTTLLSADYSQLELRILAHLSEDTGLCSILSKPNGDVFRGIV 1588 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 + + Sbjct: 1589 SVWKK-------------------------------------------KKQEDVTDDERQ 1605 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + A + + ++ + + + Sbjct: 1606 QAKQICYGIVYGMGCKSLAEQLEVSEEEAQLFVDSFHSTYPNIQKFITNTINMCRS---- 1661 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 ++ GR + +N + Q R+ Sbjct: 1662 ----------------------KGFVITLLGRRRFLPSINSNNAAQR---AQAERQA--- 1693 Query: 595 GKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY 648 +Q + D++ ++ ++ +V +HDE++ E P A+ + Sbjct: 1694 ---VNTKIQGSAADLVKTAVILLNRSLKEKLSDVHLVHQIHDELLFEIPTNCVERAARVV 1750 Query: 649 H-LMTSNPSWAKGLPLK 664 M + +P+ Sbjct: 1751 RHCMETAIPMKIRIPVA 1767 >gi|145350384|ref|XP_001419587.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579819|gb|ABO97880.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 824 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 90/743 (12%), Positives = 190/743 (25%), Gaps = 137/743 (18%) Query: 44 LWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 D + +V KE EN +V V HN F+R V++ + + T+ +AR Sbjct: 102 WVDTLRGGDGVWEVFKEYFENANVKKVWHNYSFDRHVVENHHGIKLAGFA-ADTMHMARL 160 Query: 103 NGLPSALKA----------------VGEALKLSSQKMEEGKELIARFCKGE-THECLYDR 145 L E L ++ M + + F K + + + Sbjct: 161 WNSNRKLDGGYSLEALSSSADAMSECAEMLGAGAEMMRAKRGMKKIFGKPKLKKDGTPGK 220 Query: 146 N--------KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE--------------- 182 R++ + EY D T + + LE Sbjct: 221 TMILPPIEEIQEARDSRDRWIEYSALDAQATWFLRESLEAKLRGMSCEACPILASKPGYR 280 Query: 183 -----QELW--------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + + L + G VD A ++ ++ + + Sbjct: 281 KCVTLWDFYTFYLAEFGNLLTQMERNGLLVDKAHLAHAEKMAHEDKRVAEDYFRNWAASK 340 Query: 230 -----VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + + +++ LF G + + + ++ + R + Sbjct: 341 CEGARIMNVGSGLQVRQLLFA--GAKNKRRDKPGVELTREFTQESSEWIAWDAAGREGKA 398 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 +K+ L +Q + TG + R + I Sbjct: 399 PKKTMKV-ALHGITVK------PIQVQTFTATGLPAVSSVVL----RALAGKPGAARAIM 447 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIA----SEGKKLVVA-----DLAGIEARVLAWMA-- 393 S+ ++ + A EG + A D+A I+ + ++ Sbjct: 448 DTWDSLADAEKTEDVLKKACGTAFEAFGGGKEGVQACAAIDALNDVAAIDTLLSNFIIPL 507 Query: 394 -GEQWKLKAFETGEDL--------YVTTYARSFNVAPAQVTKDQRAIGKVMELALG---- 440 G+ + L N + + Sbjct: 508 QGDDIRGPEGRVHGALNINTETGRLSARRPSLQNQPALEKDRYGIRKAFTAGPGNILVVA 567 Query: 441 -YQGGAKAFQKMASTTGLNLNTFAH------------LVKTNSAPEEWEDAENF--CRWM 485 Y + F A ++ E + Sbjct: 568 DYGQLELRLLAHMADCKSMQEAFEAGGDFHSRTALGMYSNIKEAIDKGEVVLEYGEQEET 627 Query: 486 QENHPEHAIEDLFIGTACER-----VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + A+ + + A+ + +++ W + T+E A Sbjct: 628 VDEKDRPALVKDVFASERRKAKVLNFSIAYGKTAHGLAKDWGTSLEEAANTVELWYADRP 687 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 + R+ V K ++ GR D + R Sbjct: 688 -EVREWQEVQKKMAVEKNLVRTLLGRVRNLPDASSKNEA---FKSHALRASINTP----- 738 Query: 601 IVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTS 653 +Q + DI M+ + GY +++ +HDE++ E P+ + A L M + Sbjct: 739 -IQGGAADIAMLAMLQIQRCPRLKELGYKLLMQIHDEVILEGPEEHKDEALALTKYHMEN 797 Query: 654 NPSW---AKGLPLKAEGYESKRY 673 + L +G +K + Sbjct: 798 PFPGHVNLLNVALAVDGDYAKTW 820 >gi|281339993|gb|EFB15577.1| hypothetical protein PANDA_004677 [Ailuropoda melanoleuca] Length = 769 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 79/493 (16%), Positives = 149/493 (30%), Gaps = 70/493 (14%) Query: 67 TIVAHNSY-FERTVLKACFNLDIPIHRWI-----CTLVLARSNGLPS---ALKAVGEALK 117 ++ N+ F RTVL F D + + A + + + Sbjct: 308 PVICFNAKDFVRTVL-QFFGHDGSWKHVVHFVGLDPRIAAWLIDPGDAAPSFEDLVAKYL 366 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPN-------HREAWRLFGEYCKGDVTVTRE 170 SS ++ + + R Y + T E Sbjct: 367 ESSISVKVNSTYGNSSRNVVNQNVRVNLKILYRLTMGLCSQLKARRLTVYGLWQLFCTLE 426 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + L + + VD + ++ +L+QE + Sbjct: 427 L------------PLIPILAVMESHSIQVDREEMERTSALLGSRLKELEQEAHFVAG-EQ 473 Query: 231 SSSRCLEKLKTWLFLETGLHL-------EDLT----ETTCQRVLSSNKKLTPQAIQVFNN 279 +L+ LF + L L +T + VL + + L P + Sbjct: 474 FLITSNNQLREVLFGKLKLPLLSPRETLPRTGLQRLPSTSEAVLRALQDLHPLPKIILEY 533 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ ++ L+ A G + T G + TGR S Q + + + Sbjct: 534 RR-VHKTKSAFVDGLL-ACMRKGSISSTWNQTG-TVTGRLSARHPNIQGISKHPIQITKP 590 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +T P RS +A EG + AD + IE R+LA ++G+ L Sbjct: 591 QNFKGVEGAMLTISP----------RSMFVAPEGHTFLAADFSQIELRILAHLSGDPELL 640 Query: 400 KAFE--TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 K F+ +D++ T ++ V P VT R K + + Y G + L Sbjct: 641 KLFQESERDDVFSTLTSQWKGVPPEHVTHADREQTKKVVYSAVYGAGKERLAAC-----L 695 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + S ++++ ++F + + +G R+ RV Sbjct: 696 GVTVQEAAWFLESFLQKYKKVKDFVQTTIAQCHQTGYVASIMGR---------RRPLPRV 746 Query: 518 SELWNELHQAFEQ 530 +L E+ Sbjct: 747 RAQDQQLRAQAER 759 >gi|94961605|gb|ABF48184.1| family A DNA polymerase [Trichococcus collinsii] Length = 241 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 92/275 (33%), Gaps = 38/275 (13%) Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL + P + N R ++ + L++ + + T ++TG Sbjct: 1 TAVDVLEKLQAQAPIVEHILNYRQ-LAKLQSTYVEGLLKFIKPETGKIHTRYQQTLTQTG 59 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376 R S QN+P + +R + + G KL Sbjct: 60 RLSSVDPNLQNIPIRMEEGRK-------------------------IRQAFVPQQAGWKL 94 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVM 435 +D + IE RVLA ++G++ +AF G+D++ +T R F + P VT + R K + Sbjct: 95 FASDYSQIELRVLAHISGDEHLQEAFLEGQDIHTSTAMRVFGIEKPEDVTANLRRQAKAV 154 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + Y + LN+ A + E++ + F + + E+ Sbjct: 155 NFGVVYGIS-----DYGLSQNLNITRKAAQEFIDRYFEKYPGVKQFMEDIVKEAKENGYV 209 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + R ++ + + Sbjct: 210 ETLFHR--RRYLPDIHNRNFNLRSF---AERTAIN 239 >gi|213421456|ref|ZP_03354522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 236 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 36/243 (14%), Positives = 76/243 (31%), Gaps = 26/243 (10%) Query: 96 TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 T++ + +V + S K + E ++ A Sbjct: 1 TMLESYILN------SVAGRHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALE 51 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALA 204 G Y D VT ++ ++ P + L + + G +D A+ Sbjct: 52 EAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVL 111 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQ 260 H ++ + + +L+++ + + ++L+T LF + G+ T +T + Sbjct: 112 HKHSEEITLRLAELEKKAHDIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSE 170 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL P + R ++ + L +N T + TGR S Sbjct: 171 EVLEELALDYPLPKVILEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLS 229 Query: 321 GCV 323 Sbjct: 230 STD 232 >gi|224143022|ref|XP_002324822.1| predicted protein [Populus trichocarpa] gi|222866256|gb|EEF03387.1| predicted protein [Populus trichocarpa] Length = 646 Score = 168 bits (425), Expect = 3e-39, Method: Composition-based stats. Identities = 82/537 (15%), Positives = 158/537 (29%), Gaps = 92/537 (17%) Query: 161 CKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 C V TR + L L + E L + + G VD+ + Sbjct: 160 CCRRVAQTRALCSGLWKLLTSEGLFEALKNIEIPLVNVLADMELWGIGVDMEGCLNARTV 219 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE------DLTETTCQRVLS 264 + L+++ L S + L+ L + +T + L Sbjct: 220 LGKRLRYLEKKAYKLAGMT-FSLYTAADIANILYRHLKLPIPEGHNKGKKHPSTDKHCLD 278 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLN----TLVEAMNSDGRLRGTLQFLGASRTGRWS 320 + P + +R A + + L G ++ TGR S Sbjct: 279 LLRHEHPIVPVIREHRTLAKLLNSTLGSICSLARLSMETQKYTLHGHWLQ-TSTATGRLS 337 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVA 379 Q + +D ++ ++P+ +I + R + + L+ A Sbjct: 338 IEEPNLQCVEH------AVDFEMSSDKEGDDAEPEHYKINA---RDFFVPTQDNWLLLTA 388 Query: 380 DLAGIEARVLAWMAGEQWKLK-AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 D + IE R++A + + +K + D++ AR A V+ +R K M Sbjct: 389 DYSQIELRLMAHFSKDTALIKLLTKPHGDVFNLIAARWTGKPEASVSSVERDQTKRMVYG 448 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y GA + L+ ++ K S + ++ + E + Sbjct: 449 ILYGMGANTLAEQ-----LDCSSDEAAEKIKSFKSSFPGVASWLHEAVASCREKGYVETI 503 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 G +R + +S + + +I G A K + + + D Sbjct: 504 KGR--KRFLSKIKFGNSEEKS---KAQRQAVNSICQGSAADLIKIAMINIHSLIVDG--- 555 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 + P SL M+ Sbjct: 556 -VGRPESSSLHANKFH---------------------------------------ML--- 572 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRYR 674 K I+L VHDE+V E + A++L + M S +PL + + + Sbjct: 573 KGQCRILLQVHDELVLEVDPSLINEAAVLLQMSMEDAASLL--VPLHVKLKVGRTWG 627 >gi|115460848|ref|NP_001054024.1| Os04g0637400 [Oryza sativa Japonica Group] gi|113565595|dbj|BAF15938.1| Os04g0637400 [Oryza sativa Japonica Group] Length = 560 Score = 167 bits (423), Expect = 5e-39, Method: Composition-based stats. Identities = 62/408 (15%), Positives = 116/408 (28%), Gaps = 91/408 (22%) Query: 277 FNNRMRASRSAVLKLNTLV-EAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + L + +GR+ +L + TGR S QN P Sbjct: 229 LCEICSIDSLISNFILPLQGNHISCDEGRIHCSLNIN--TETGRLSARTPNLQNQP---- 282 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 L+ +R +A+ G L+VAD +E R+LA +A Sbjct: 283 ---------------------ALEKDRYKIRQAFVAAPGNSLIVADYGQLELRILAHLAS 321 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L AF+ G D + T + V + K + Sbjct: 322 CKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEE------------------KKVLLEWHPQ 363 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G L A NF + A + + K W + Sbjct: 364 PGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLWYRDR 423 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + + ++ E GRS + ++ Sbjct: 424 KEVLAWQMKQKELAQEKCEVY--------------------------TLLGRSRRFPNMA 457 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628 + S + R VQ + D+ M+ + G+ ++L V Sbjct: 458 HATSGQRGH---IERAAINAP------VQGSAADVAMCAMLEIDRNARLKELGWRLLLQV 508 Query: 629 HDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673 HDE++ E P ++ + S++ M+ + + L + ++ + Sbjct: 509 HDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELAVDAKCAQNW 556 >gi|300781564|ref|ZP_07091418.1| conserved hypothetical protein [Corynebacterium genitalium ATCC 33030] gi|300533271|gb|EFK54332.1| conserved hypothetical protein [Corynebacterium genitalium ATCC 33030] Length = 1474 Score = 167 bits (422), Expect = 6e-39, Method: Composition-based stats. Identities = 83/531 (15%), Positives = 149/531 (28%), Gaps = 89/531 (16%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD-HPVELWDCVHDPVMPQVLKEAL 61 T+ D ET S D + V L + PV D L L Sbjct: 903 TVVFDLETGSADD-----QHVTDDPGFVRLATYSVGGAEPVATTDIAG------ELIPLL 951 Query: 62 ENTDVTIVAHNS-YFERTVLKACFNLD----IPIHRWICTLVLARSN-----GLPSALKA 111 E D TIV HN ++ VL+ + LD I + TL++ R L L A Sbjct: 952 EQAD-TIVGHNIVQYDLPVLQRLYGLDVGALIKAGKVRDTLIMVRLASGGNRNLEYNLDA 1010 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 V + + + + + K + EY DV + Sbjct: 1011 VAHRCGVDGKLLAGSESALKALAKQYGG-------FDKIPVDNPEYVEYALQDVRANGAV 1063 Query: 172 FKRLEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 +++L P +E E + + G VD A + ++ L Sbjct: 1064 YEKLLPATIEAVGEDYLRREHEKMHSLSVVESHGVRVDTAKVDAFIAEEAQTKAEIRAWL 1123 Query: 223 ESLTYGLVS---SSRCL--EKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI 274 ++ G+ + +T + L+ + Sbjct: 1124 VDTVGIPDEGKAPWASAAGKQAIAEYLERFGVAAPRTAKGAISTSAKALNDLAEAHADVP 1183 Query: 275 QVFNNRMRASRS--AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 +V + + T+ + + + R + TGR S Sbjct: 1184 EVVELAAKMETLLQSSTPATTIKKYLRGE---RVYPHITSSQATGRLSTTNPGMTVFGSR 1240 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391 R ++A ++L+ DL+ I+AR +A Sbjct: 1241 DERLIRQ-------------------------REMIVADSADEELISVDLSQIDARCMAA 1275 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +G+ F G D + R F +R+ K + A Y G K+F Sbjct: 1276 GSGDAAYAALFAPGRDAHTEMAIRVFG------DAARRSDAKALGHAANYGMGPKSFAAH 1329 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 A ++ + + E+ E F ++++ G Sbjct: 1330 A-----GISEVEAKEQLDRLHFEFPQLEAFKDHLRKHAKALGWIATGFGRR 1375 Score = 62.1 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 30/253 (11%), Positives = 58/253 (22%), Gaps = 47/253 (18%) Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 E L + A ++ + +A G A+ + + Sbjct: 1231 NPGMTVFGSRDERLIRQREMIVADSADEELISVDLSQIDARCMAA--GSGDAAYAALFAP 1288 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 A V ++A A A + + Sbjct: 1289 GRDAHTEMAIRVFGDAARRSDAKALGHAANYGMGPKSFAAHAGISEVEAKEQLDRLHFEF 1348 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 ++ + L + + + GR Sbjct: 1349 PQLEAFKDHLRKHAK--------------------------ALGWIATGFGRR------- 1375 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV-LTVHDEIV 633 ++ YG Q +RD+ EG++N ++V + VHDEIV Sbjct: 1376 ---VAVDRAKAYTQAPAAYG--------QGTARDVFLEGVLNLPAEVLEMVRIFVHDEIV 1424 Query: 634 CETPDTDEFNASM 646 P + Sbjct: 1425 LSVPRERAEDIKQ 1437 >gi|313905679|ref|ZP_07839040.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] gi|313469503|gb|EFR64844.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] Length = 180 Score = 167 bits (422), Expect = 7e-39, Method: Composition-based stats. Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 19/189 (10%) Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + + +WR + ++ W ++ +A + TI +V + Sbjct: 1 MGLSEEELQPLVNSWRNSNPMITAFWWDIDRAVKTTITQRIQT------EVRGICFFYKS 54 Query: 556 NNLILMLPSGRSLVY--RDVGNNR------SYLN-TTTRQLTREYTYGGKLTENIVQAVS 606 L + LPSGR L Y +G N+ +Y +T++ R +YG K ENIVQAVS Sbjct: 55 GMLFIKLPSGRLLSYVKPRIGENQYGGESVTYEGVGSTKKWERIESYGPKFVENIVQAVS 114 Query: 607 RDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 RDIL M IV VHDE++ E + N + M +P W + L+A+ Sbjct: 115 RDILCYAMKTLRH--CFIVGHVHDELIIECSPDVDTNV--ICKQMGRSPDWMPDILLRAD 170 Query: 667 GYESKRYRK 675 GYE+ Y+K Sbjct: 171 GYETNFYKK 179 >gi|12321800|gb|AAG50942.1|AC079284_17 DNA polymerase A family protein, putative [Arabidopsis thaliana] Length = 1067 Score = 166 bits (421), Expect = 9e-39, Method: Composition-based stats. Identities = 62/426 (14%), Positives = 110/426 (25%), Gaps = 111/426 (26%) Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + L DGR+ +L + TGR S QN P Sbjct: 720 LCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQP---- 773 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 L+ +R +AS G LVVAD +E R+LA + G Sbjct: 774 ---------------------ALEKDRYKIRKAFVASPGNTLVVADYGQLELRILAHLTG 812 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + ++AF+ G D + T + V Q + Sbjct: 813 CKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQV------------------ILEWHPE 854 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G + L + NF + + + + W Sbjct: 855 PGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDR 914 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + ++ IE+G + GRS + Sbjct: 915 QEVRKWQ---EMRKKEAIEDGYVLTLL-----------------------GRSRRFPASK 948 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVL-- 626 + + R VQ + D+ M+ + K G+ ++L Sbjct: 949 S-----RAQRNHIQRAAINTP------VQGSAADVAMCAMLEISINQQLKKLGWRLLLQW 997 Query: 627 ----------------TVHDEIVCETPDTDEFNASML-YHLMTSNP--SWAKGLPLKAEG 667 +HDE++ E P A + M+ + L + Sbjct: 998 SLLDWKLSNKGNLYWKQIHDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDLSVDA 1057 Query: 668 YESKRY 673 ++ + Sbjct: 1058 KCAQNW 1063 Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 44/354 (12%), Positives = 97/354 (27%), Gaps = 72/354 (20%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DC--VHDPVMPQ 55 D E + + + +I F+ F + +W D + + Sbjct: 290 SCDTE----VSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWVDVLGENGREVLA 345 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL------PSAL 109 K E++ + V HN F+ +++ ++I T+ +AR +L Sbjct: 346 EFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFH-ADTMHMARLWDSARRIKGGYSL 403 Query: 110 KAV---------------GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 +A+ E L S K GK + + + + E Sbjct: 404 EALTSDPKVLGGTQTKEEAEFLGKISMKTIFGKRKLKKDGSEGKIVVIPPVEELQR-EDR 462 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLS----------------------SKEQELWYLDQTI 192 + Y D T ++++ + + L + Sbjct: 463 EAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTMLDFYHEFWRPFGELLVKM 522 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF--- 244 G VD + ++ E+ + + +L+ F Sbjct: 523 EAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFFGGI 582 Query: 245 ----LETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 + L +E L + +V+ KK + + +R+ S + Sbjct: 583 SNSSHDEVLPVEKLFKVPNIDKVIEEGKKTPTKFRNIKLHRISDSPLSTENFTA 636 >gi|322822411|gb|EFZ28469.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma cruzi] Length = 927 Score = 166 bits (421), Expect = 9e-39, Method: Composition-based stats. Identities = 89/718 (12%), Positives = 185/718 (25%), Gaps = 170/718 (23%) Query: 9 ETRSPIDLTKCGICKYAE--DVCV--ILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN- 63 ET I G + + + + F +++ +H L LE Sbjct: 296 ETNFSISAKTHGKVHFVRKTNPEMSHLSVQFFILRWKDDVF-VLHASTALSFLVRVLEEL 354 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 + V IV N+ +L + ++ +++ + A + Q Sbjct: 355 SGVEIVTFNAPSLLLLLLSYKQGNLFTLCVSDIRLMSWMLQPSAGADAF-TDYDVLLQSC 413 Query: 124 EEGKELIARFCKGETHECLYD---RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++ L A F E R L+G+ L Sbjct: 414 QQQIGLAAGFRNMENCTVKEIVCHRVYYMAPLYRLLYGQ---------LGTQGLLPAFLK 464 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY-GLVSSSRCLEKL 239 +E+ + L + G+ V+++ +L + L + + LE+ Sbjct: 465 QEKRISLLCAAMKLNGFPVNLSEVEGFKTRCIARMEELRIAAQKLVPSMPEFNMQNLEEC 524 Query: 240 KTWLFLET-----------------GLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRM 281 + ++ L + + +T + L + R Sbjct: 525 RMAIYEVLQLGTHLTHARNDGTDSCSLTVTKSGKLSTSEETLKLLAPHHELPRLLIAYR- 583 Query: 282 RASRSAVLKLNTLVEAMNS---------DGR-----------------LRGTLQFLGASR 315 + ++ ++E D R L G + Sbjct: 584 KTAKLLQTYTVGMMETAFPFKGNDSEFTDNRIGESSDKKDDTPVKWVTLHPNFVQEG-TD 642 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QNLPR + + +P + R C G Sbjct: 643 TGRLSCVEPNLQNLPR-------------SKAIAENDNSEPYEAEMATFRRCFAVPIGLT 689 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ D IE RV+A ++ + + A D++ F +P V ++R + K + Sbjct: 690 LLSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKSP--VNVEERTLAKRV 747 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + Y A + Sbjct: 748 VFGMLYG--------------------------------------------AGPRTLATQ 763 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 V ++ + ++ + Sbjct: 764 MGVPMERALHVMSLFKASYPQIERYQRRVIDQCRT------------------------- 798 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + + +GR D+ + R+ +++Q + D++ GM+ Sbjct: 799 -DGFVRTMTGRIRSLPDINDRVMAKRMY---AERQA------FNSVIQGSAADVMKLGML 848 Query: 616 NATKA-------GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKA 665 + ++ +HDEIV P ++ M S +PL+ Sbjct: 849 AVERDVLQLYNGDVRLLAQIHDEIVLSVPTHKLREVVPLVSRSMMHAVSLL--VPLRV 904 >gi|66817246|ref|XP_642487.1| hypothetical protein DDB_G0277751 [Dictyostelium discoideum AX4] gi|60470570|gb|EAL68549.1| hypothetical protein DDB_G0277751 [Dictyostelium discoideum AX4] Length = 516 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 65/552 (11%), Positives = 150/552 (27%), Gaps = 137/552 (24%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E ++ + + G + + + + V + L+ + + L G V S E + Sbjct: 23 EIEMKILPIFAMMEFVGIGFNEKICESGREKVQNKINYLEYKAKVLLPGKVFSLSSTEDI 82 Query: 240 KTWLFLETGLHLEDLTE-----------------------TTCQRVLSSNKKLTPQAIQV 276 LF + + + ++ + +T VL P + Sbjct: 83 SQLLFQDLKIPVPEIAKANQQYNGNKGGGGCGGGVRRQNYSTKGAVLEHISHHHPLPGLI 142 Query: 277 FNNRMRASRSAVLKLNTLVEAMNS----DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 R + + ++ L + + R + TGR S QN+ P Sbjct: 143 IEIR-KLTHHITHYVDILGKYEYHSDRFNMRRIYSTIQQTVVPTGRISMAFPNLQNISHP 201 Query: 333 SR---------------------SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 D ++ +R+ + Sbjct: 202 IEFRVAPSETDLQSQDSIKSFQDEIHTFDYTNDQNFKNLLEIESRCSFTKVSLRNSFTCA 261 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE--TGEDLYVTTYARSFNVAPAQVTKDQR 429 G L+ AD + +E R+L + + ++ F D++ + V +V+ ++R Sbjct: 262 NGYVLLSADYSQLELRILTHYSKDPNLIEMFNYSRELDVFKCIAHQLSGVDYEKVSDEER 321 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + G+ +N+ A +K + Sbjct: 322 NFAKHLVYGIL--------------YGMGINSIASELKVDK------------------- 348 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + + ++ + + + + Sbjct: 349 -----------EKAKVQLERFKNTYRTLIDFLESIEDRV--------------------- 376 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + + GR + + + ++ + ++ Q + DI Sbjct: 377 -----FIDAYIKTLFGRIRNFSAIHDPKTLPKDIGKIKRGAR-------NSVPQGTAADI 424 Query: 610 LAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLP 662 M+N +VL +HDE++ E P TD A ++ M + LP Sbjct: 425 TKLAMINIQSQFDQLSINVHMVLQLHDELLFEVPLTDIDQSAKIIKESMENVVKLNVPLP 484 Query: 663 LKAEGYESKRYR 674 +K + Sbjct: 485 IKM--SIGTNWG 494 >gi|47216119|emb|CAG11187.1| unnamed protein product [Tetraodon nigroviridis] Length = 2382 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 96/753 (12%), Positives = 188/753 (24%), Gaps = 174/753 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVM---------------------PQVLKEALENTDVTI 68 +I A + + +K L Sbjct: 1689 LIGLAVCWGSRDAYYISLQQEQSAGSFSSSLAPPPLDDDLGLRERLAQVKTCLGQPS--- 1745 Query: 69 VAHN-----SYFER----TVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 AH+ ++ VL + + V E L Sbjct: 1746 -AHHGDRVLIAYDIIRTYKVLVLSCGISLE-GSCEDPKVACWLLDPG------SEERTLP 1797 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177 + E + + P R + Y V + L Sbjct: 1798 NMVTVYCPEELPLLG----GLGSSHTHCPRVRASTASVLTYA-----VMGRLTGLLREDG 1848 Query: 178 ----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 S E + G A ++ + L+ + L S Sbjct: 1849 VLDHFRSVEMPSQVCLALLELNGVGFSAAECERQKHVMQAKLAALEGQAYRLAGHS-FSL 1907 Query: 234 RCLEKLKTWLFLETGLHL-----EDLTE--------------------TTCQRVLSSNKK 268 ++ + LFLE L ++ +T + VL + Sbjct: 1908 TSVDDVAQVLFLELHLPPNGDVNGSKSKKTLGYGRRGGGGRVRLGKQFSTTKDVLEKLRP 1967 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRT------- 316 L P + R + + L R+ Q A+ Sbjct: 1968 LHPLPGLILEWRRITNAL-TKVVFPLQREKKHHSALSMDRIYPIAQTHTATGNPQTPEPC 2026 Query: 317 --------------GRWSGCVFPPQNLPR-------------------PSRSHEELDQII 343 GR S QN+P+ + + + Sbjct: 2027 ETCNMRWLSLVLLPGRVSFTEPNIQNVPKDFEIQMATVVCESPPSQDGRHLAARKGKKRR 2086 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + +P+ + + S +R + G ++ AD + +E RVLA ++ +Q L+ Sbjct: 2087 SAVPSGAAAGSEQGPAFSVSMRHAFVPFSGGMILAADYSQLELRVLAHLSKDQRLLQVLN 2146 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G D++ A +V P VT R K + + Y GAK+ + + + Sbjct: 2147 GGADVFRCIAAEWKSVDPDSVTDGLRQQAKQICYGIIYGMGAKSLGE-----QMGVEEND 2201 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + F + +N ++ +G R+ ++ Sbjct: 2202 AACYIETFKSRYRGINAFLKETVKNCGKNGYVQTLMGR---------RRYLPGITNTNAH 2252 Query: 524 LHQAF-EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + Q + A + V ++K P +G ++ Sbjct: 2253 VKAHAERQAVNTTVQGSAADIVKLATVNIQKRLRQTYPAAPLSHQHPAPVMGRFCGAGSS 2312 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 R +TR G VL +HDE++ ET D D Sbjct: 2313 RRRAVTR----------------------------HPRGGYFVLQLHDELIYETTDEDVI 2344 Query: 643 NASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674 + + M + + ++A+ + Sbjct: 2345 QVAQIVKREMETAVKLY--VKMRAKVKVGPSWG 2375 >gi|307177771|gb|EFN66768.1| ATP-dependent DNA helicase HEL308 [Camponotus floridanus] Length = 1821 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 67/505 (13%), Positives = 143/505 (28%), Gaps = 148/505 (29%) Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSS-SRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263 + + R Q+L T V++ + ++ + + + +L Sbjct: 1405 NRARIKLKKIRKMRSQKLAEDTLTEVNNRLNSPIRAESSDIARN--KTKQKAKPKLKEIL 1462 Query: 264 SSNKKLTPQAIQVFNNRMR----ASRSAVLKL--------NTLVEAMNSDGRLRGTLQFL 311 N L S ++ K+ L++ +D R+RG + Sbjct: 1463 ERNLLLANCNTDSIIYNSEDETTLSLASKTKIIETQSNLIQPLLKLAQTDSRVRG--NSI 1520 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 + TGR S QN+P+ VR + + Sbjct: 1521 TCTVTGRVSMHEPNLQNVPK--------------------DFSFADNNFVLSVRMAFVPA 1560 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 G ++ AD +E R+L + + + D++ + A+ NV+ +VT + R Sbjct: 1561 LGNIMLSADYCQLELRLLTHFSQDSILCEIMRQPGDIFKSIAAKWNNVSEEEVTIEMRQR 1620 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y G K+ Sbjct: 1621 TKQLCYGMIYGMGVKSL------------------------------------------- 1637 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 A + + +++ + + + N + + + Sbjct: 1638 -AENLCISESEAQEFLESFMSTYPGIYKWLNNVLEEAHR--------------------- 1675 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 ++ + GR + D+ + +S +T Q R+ VQ + DI+ Sbjct: 1676 -----DVYITTLLGRRRQFPDLKSTKS---STRAQAERQA------VNTKVQGSAADIVK 1721 Query: 612 EGMMNATKA-------------------------------GYDIVLTVHDEIVCETPDTD 640 + M++ + G +VL +HDE++ E D Sbjct: 1722 KAMISIEERIRCNFPDSAIIFPEMNNTRKLRSNSRDMQQRGGYLVLQLHDELLYEVNLAD 1781 Query: 641 EFNASMLYHL-MTSNPSWAKGLPLK 664 + + M + LP+K Sbjct: 1782 LKEVAAIIRESMENVCQLTVPLPVK 1806 >gi|296119307|ref|ZP_06837875.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM 20306] gi|295967699|gb|EFG80956.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM 20306] Length = 1388 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 95/702 (13%), Positives = 180/702 (25%), Gaps = 179/702 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD-HPVELWDCVHDPVMPQVLKEAL 61 T+ D ET DL + + V L + + PV D L L Sbjct: 816 TVVFDLETGDADDLHVTEVPGF-----VRLATYSVNGAEPVPTTDIAG------ELIPLL 864 Query: 62 ENTDVTIVAHN-SYFERTVLKACFNLD----IPIHRWICTLVLARSN-----GLPSALKA 111 E D TIV HN ++ L+ + LD I R TLV+AR L L Sbjct: 865 EKAD-TIVGHNVLQYDLPALQRLYGLDVKALIKADRVRDTLVMARLRAGGDKNLKYDLDK 923 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 V + + + +G+ + K + EY DV + Sbjct: 924 VASRCGVDGKLLADGETALKALAKQFGG-------FDKIPVDNPNYVEYALQDVRANVAV 976 Query: 172 FKRL---------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 +++L + E + + RG VD + + + ++ L Sbjct: 977 YEKLLTSVGKEINQDYLRLEHAKMHALAVVEARGIRVDTSKVDQFLAEEEQTKGEIRTWL 1036 Query: 223 ESLTYGLVS---SSRCL--EKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI 274 +++ + + ++ +T + L+ + P Sbjct: 1037 IDTVGIPDEGKSPWASAAGKQVIADYLSQFNVAAPRTSKGSISTSTKALNELAEKHPDVP 1096 Query: 275 QVFNNRMRASRSAVLKLNT-LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 +V + + R+ +++ + A+ GR S Sbjct: 1097 EVVELAAKMETLLHASTPASTINRYLRGDRVYPSIKSIQAT--GRLSTTKPGMTVFGSRG 1154 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWM 392 R ++ + LV DL+ I+AR +A Sbjct: 1155 E-------------------------WLIRQREMILPDSTDEALVSVDLSQIDARCMAAG 1189 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G+ A + G A +MA Sbjct: 1190 SGD---------------------------------------ANYAQLFTPGRDAHTEMA 1210 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 V +++ A A + + Sbjct: 1211 L-----------RVFGDASRRSDAKALAHAANYGMGQKSFAQHAGISEVEATKQLERLHY 1259 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + + L + + + GR + Sbjct: 1260 EFPALEKFKDHLRKHA--------------------------AAHGWIPTGFGRRVTVDR 1293 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV-LTVHDE 631 +Y YG Q +RD+ EG++N ++V + VHDE Sbjct: 1294 AK---AYTRGP-------AAYG--------QGTARDVFLEGVLNLPAEVLEMVRIFVHDE 1335 Query: 632 IVCETPDTDEFNASMLYHLMT--SNPSWAK----GLPLKAEG 667 IV P +M +P+ ++ Sbjct: 1336 IVLSVPRDRAEEIKH--TVMGAFQAVELPNTGGVDVPVLSDS 1375 >gi|255088559|ref|XP_002506202.1| predicted protein [Micromonas sp. RCC299] gi|226521473|gb|ACO67460.1| predicted protein [Micromonas sp. RCC299] Length = 972 Score = 166 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 68/400 (17%), Positives = 108/400 (27%), Gaps = 91/400 (22%) Query: 286 SAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + L +GR+ L + TGR S QN P Sbjct: 648 LLSNFIIPLQSDNLRGFNGRVHAALNIN--TETGRLSARRPSLQNQP------------- 692 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 L+ +R A G L+VAD +E R+LA MAG +AFE Sbjct: 693 ------------ALEKDRYGIRKAFSAEPGNILIVADYGQLELRLLAHMAGCVSMREAFE 740 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G D + T K+ R + + L Y A Sbjct: 741 AGGDFHSRTAMGM--------YKEIREAMEQGKCLLEYG---------DIDDDAGGEKPA 783 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ NF + A + E W V E Sbjct: 784 LVKDMFASERRKAKVLNFSIAYGKTAHGLAKDFGVSTREAEETVDLWYSDRPEVREWQAV 843 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 H ++ E GK GR + ++ Sbjct: 844 QH---KKAAEKGKVNTLL-----------------------GRHRNLPEASSSDEMRRGH 877 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETP 637 R +Q + DI M+ + G+ +++ +HDE++ E P Sbjct: 878 ---ALRASINTP------IQGGAADIAMLAMIQIHRCPRLRELGFKLLMQIHDEVILEGP 928 Query: 638 DTDEFNASMLYHL-MTSNP---SWAKGLPLKAEGYESKRY 673 + A L L M + L +G +K + Sbjct: 929 EEHRDEALALVKLHMEKPFNDHENLCDVELSVDGDYAKTW 968 >gi|309810195|ref|ZP_07704040.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D] gi|308169467|gb|EFO71515.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D] Length = 681 Score = 166 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 54/386 (13%), Positives = 118/386 (30%), Gaps = 62/386 (16%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85 F+ + + D D + Q LK+ LE+ ++ + L+ Sbjct: 337 AQYAGFSVKI-KQKIYVCD---DVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 391 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 + + + ++ + + L + + +E E + Sbjct: 392 ITL-FNVTDDIMLASYIADSENN----AGDLGVLANSYQEF-----YVQSDEIIYGKGKK 441 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDR 195 H + V V ++ ++ P + + + + + Sbjct: 442 Q---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIA 498 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G V + +DV T L ++ L + ++L LF + L T Sbjct: 499 GIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFEKLKLTPAKKT 557 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + +T VL + +P + + R S+ +N L++ + +DG++ Sbjct: 558 KTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRFLQ-T 615 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-S 371 + TGR S QN+P + +R + Sbjct: 616 LTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAFVPCK 650 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQW 397 + L D + +E RVLA ++ E+ Sbjct: 651 QDSYLFSCDYSQVELRVLAHVSHEKN 676 >gi|195450899|ref|XP_002072681.1| GK13557 [Drosophila willistoni] gi|194168766|gb|EDW83667.1| GK13557 [Drosophila willistoni] Length = 2080 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 93/670 (13%), Positives = 201/670 (30%), Gaps = 131/670 (19%) Query: 30 VILFAFGFDDHPVELWDC---VHDPVM-----PQVLKEALENTDVTIVAHNSYFERTVLK 81 + +F D+ + + + L + L ++T++ H+ + +L+ Sbjct: 1510 IACLSFCLADNVAYYMNMQQEGKKEAVGTQLKVEELVKLLTRPELTLIMHDGKEQLKILR 1569 Query: 82 ACFNLDIPIH-RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 + I + V V + Q E K L G + Sbjct: 1570 HAMPQLVRIAIKLEDPKVANWLLQP----DKVLSFHNMCQQFAPECKGLTDLCGSGRGYS 1625 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIF------------KRLEPLSSKEQELWYL 188 R E C + + L+ E + Sbjct: 1626 SYGLDASNAILPKIRASVEAC----VSMHILHGQIENLERIGTGQLLKFFRDLEMPIQLS 1681 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G+ L+Q + KL+ ++ L + + + L G Sbjct: 1682 LCNMEFTGFPAKQESLQGLSQQMLSTMKKLEAKIYELHGSR-FNLGSSQAVAKVL----G 1736 Query: 249 LHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 LH + + +T +++L +P + + R + S + L++ D R+ G Sbjct: 1737 LHRKASGKVSTSRQILEKL--DSPISQLIVGYR-KLSTVLAKNVQPLLK-CCQDNRVYGQ 1792 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 A+ GR S QN+ + + + D++ RS Sbjct: 1793 SLSYTAT--GRISMSEPNLQNVAKDFEINLDSDKVNIS------------------CRSA 1832 Query: 368 VIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 + + K+ L+ AD +E R+LA ++ + L+ + DL+ AR ++ ++V++ Sbjct: 1833 FLPMDFKRCLISADFCQLEMRILAHLSQDPALLEVMNSPRDLFTAIAARWNHMNESEVSE 1892 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R K + + Y G ++ + L + + + + + + Sbjct: 1893 NLRNGTKQICYGIVYGMGMRSLAE-----SLKCTENEAQTVSEQFHQTYAGISAYIQKVV 1947 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQ-KHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + + G + + + +S ++ N+ + + G A K Sbjct: 1948 KFARNNGYVETITGR------RRYLEHINSGELQIKNQAERQAINSTIQGSAADIAK--- 1998 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 L + R R TEN V Sbjct: 1999 ---------SAILRMEKHLLRYR-------------------ERLGI-----TENSV--- 2022 Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 ++VL +HDE++ E P + + L M S +PLK Sbjct: 2023 -----------------NLVLHLHDELIFEVPIDKAKKIAKVLSLTMESCVK--LSVPLK 2063 Query: 665 AEGYESKRYR 674 + + + Sbjct: 2064 VKLKIGRSWG 2073 >gi|183231230|ref|XP_653960.2| DNA-directed DNA polymerase [Entamoeba histolytica HM-1:IMSS] gi|169802582|gb|EAL48574.2| DNA-directed DNA polymerase, putative [Entamoeba histolytica HM-1:IMSS] Length = 657 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 92/639 (14%), Positives = 170/639 (26%), Gaps = 146/639 (22%) Query: 53 MPQVLKEALENTDVTIVAHNSYFERT-------VLKACFNLDIPIHRWICTLVLARSNGL 105 + + L + N+ I+ +N E + FN + + T + A + Sbjct: 140 LKKELLPEIINSRRLIIVYNLMEEIKNYRNNIKCILENFNTN---NTIFDTYIGASTIDP 196 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 S +GK E NK E + +V Sbjct: 197 GS----------------VDGKTFSQICLVYEVII-----NKSTIEERLKQTRRLAVKEV 235 Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 V + L + + +D L + + + E+ K++ E + + Sbjct: 236 EVMNNDNMIKVFQEQEMIIDGVLIEMNYCNEFKIDNKLLNEQRKKLIEEQHKIEMETKKI 295 Query: 226 TYGLVSSSRCLEKLKTWLFLET-GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + + E++K L G+ TT +++LS P A V R + S Sbjct: 296 IGRTI-NLSSPEQVKKELIRFNIGIDGIKKKATTDKKILSQ--SDHPFAKLVLEYR-KIS 351 Query: 285 RSAVLKLNTLVEAMNS--DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + + + + D T A TGR Q +P+ S S + I Sbjct: 352 KLLSGVIEQIRKCCIKSGDEYFIRTTWSQTAIVTGRIQSKSPNLQQIPKQSFSLPQCLII 411 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 R I V D IE R+LA + ++ F Sbjct: 412 P---------------------RDLFITHNNNTFVAIDYNQIELRILADFTKDHHLIEFF 450 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 ++ D++ A +T D+R K + G+ + Sbjct: 451 KSNTDVHRLIAAHWLKKNVNDITDDERRKAKTIVYGCI--------------YGIGPFSL 496 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + + +++ + + Sbjct: 497 ADQLH------------------------------VSLDESKAFLESFLDQFPAFKKWK- 525 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + G RR D + ++ + Sbjct: 526 --EETITNASTTGFVHTINNRRRRINN--------------------LTDCNDKKTVAES 563 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 + +Q + DI+ M+ K G ++L +HDEIV E Sbjct: 564 KR-----------IAVNSPIQGTAADIIKMCMIEIFKKLHSSWVGVQLLLNIHDEIVLEV 612 Query: 637 PDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 PD L HLM +PL K++ Sbjct: 613 PDHLLDEVCVTLKHLMEHIVK--LEVPLVVTVETGKKWG 649 >gi|71660963|ref|XP_817509.1| mitochondrial DNA polymerase I protein A [Trypanosoma cruzi strain CL Brener] gi|70882706|gb|EAN95658.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma cruzi] Length = 924 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 88/718 (12%), Positives = 185/718 (25%), Gaps = 170/718 (23%) Query: 9 ETRSPIDLTKCGICKYAE--DVCV--ILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN- 63 ET I G + + + + F +++ +H L LE Sbjct: 293 ETNFSISAKTHGKVHFVRKTNPEMSHLSVQFFVLRWKDDVF-VLHASTALSFLVRVLEEL 351 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 + V IV N+ +L + ++ +++ + A + Q Sbjct: 352 SGVEIVTFNAPSLLLLLLSYKQGNLFTLCVSDIRLMSWMLQPSAGADAF-TDYDVLLQSC 410 Query: 124 EEGKELIARFCKGETHECLYD---RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++ L A F E R L+G+ L Sbjct: 411 QQQIGLAAGFRNMENCTVKEIVCHRVYYMAPLYRLLYGQ---------LGTQGLLPAFLK 461 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY-GLVSSSRCLEKL 239 +E+ + L + G+ V+++ +L + L + + L++ Sbjct: 462 QEKRISLLCAAMKLNGFPVNLSEVEGFKTRCIARMEELRIAAQKLVPSMPEFNMQNLDEC 521 Query: 240 KTWLFLET-----------------GLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRM 281 + ++ L + + +T + L + R Sbjct: 522 RMAIYEVLQLGTHLTHARNDGTDSCSLTVTKSGKLSTSEETLRLLAPHHELPRLLIAYR- 580 Query: 282 RASRSAVLKLNTLVEAMNS---------DGR-----------------LRGTLQFLGASR 315 + ++ ++E D R L G + Sbjct: 581 KTAKLLQTYTVGMMETAFPFKGNDSEFTDNRIGESSDKKDDTPVKWVTLHPNFVQEG-TD 639 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QNLPR + + +P + R C G Sbjct: 640 TGRLSCVEPNLQNLPR-------------SKAIAENDNSEPYEAEMATFRRCFAVPIGLT 686 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ D IE RV+A ++ + + A D++ F +P V ++R + K + Sbjct: 687 LLSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKSP--VNVEERTLAKRV 744 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + Y A + Sbjct: 745 VFGMLYG--------------------------------------------AGPRTLATQ 760 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 V ++ + ++ + Sbjct: 761 MGVPMERALHVMSLFKASYPQIERYQRRVIDQCRT------------------------- 795 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + + +GR D+ + R+ +++Q + D++ GM+ Sbjct: 796 -DGFVRTMTGRIRSLPDINDRVMAKRMY---AERQA------FNSVIQGSAADVMKLGML 845 Query: 616 NATKA-------GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKA 665 + ++ +HDEIV P ++ M S +PL+ Sbjct: 846 AVERDVLQLYNGDVRLLAQIHDEIVLSVPTHKLREVVPLVSRSMMHAVSLL--VPLRV 901 >gi|303289002|ref|XP_003063789.1| predicted protein [Micromonas pusilla CCMP1545] gi|226454857|gb|EEH52162.1| predicted protein [Micromonas pusilla CCMP1545] Length = 942 Score = 164 bits (416), Expect = 4e-38, Method: Composition-based stats. Identities = 72/528 (13%), Positives = 128/528 (24%), Gaps = 153/528 (28%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQEL-ESLTYG-LVSSSRCLEKLKTWLFLETGLH 250 G D ++ + E + ++ E SL + +++ L+ G Sbjct: 491 ESIGLPFDASVVEAAAVGLRRELSSIEAEASRSLPGRGQPLNLSSPQQVADVLYGFLGFP 550 Query: 251 LED-------LTE--TTCQRVLSSNK---KLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 T TT VL P V R A AV N Sbjct: 551 PPSSNAMQGAKTAQLTTKDDVLRDFASRPNAHPLPGMVLRYR--AVTRAVAMCNAYASLT 608 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 ++DGRLR + TGR S Q + R ++ + Sbjct: 609 DADGRLRCEWN-NTRTATGRLSSSNPNLQAVGR----------------AEHSAGAGEEE 651 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE---TGEDLYVTTYAR 415 + + +R+ +A GK L+ D + IE R LA + ++ G D++ + Sbjct: 652 LATFNLRAAFVAPPGKVLLAVDYSQIELRTLAHLTRDEKLCGVLRVAGDGGDVFKMIWNL 711 Query: 416 SFNVAPAQVTK-DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 S + + R K + Y Sbjct: 712 SRDAPRDAPVSAEDRDKAKRTVYGVLY--------------------------------- 738 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + A + A + + A + + + T Sbjct: 739 -----------GQGVAGLAEKLACSTDAAKGLIDALFRTFPGLKRFVVATKERARATKS- 786 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 LPSGR + + + Sbjct: 787 -------------------------AELPSGRHRPLPGIDAAAASARAEAER-------- 813 Query: 595 GKLTENIVQAVSRDILAEGMMN----------------------------------ATKA 620 K +VQ + D++ M A Sbjct: 814 -KAMNTLVQGTAADMMKTAMARWFAAISPAPAASASASAISPGGAEGDAHADVRGKADPT 872 Query: 621 GYDIVLTVHDEIVCETPD--TDEFNASMLYH-LMTSNPSWAKGLPLKA 665 ++ +HDE++ E D + L M + P+K Sbjct: 873 RARLIAQIHDELLFECDDARECVNRVAALAKVCMERAAKVSVPTPVKV 920 >gi|228968815|ref|ZP_04129777.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto str. T04001] gi|228790878|gb|EEM38517.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto str. T04001] Length = 607 Score = 164 bits (416), Expect = 4e-38, Method: Composition-based stats. Identities = 74/605 (12%), Positives = 155/605 (25%), Gaps = 187/605 (30%) Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHT 206 Y D + ++ ++++ I G D LA Sbjct: 88 LLYSAEDSDYAVQHYEYWSQIAAQIPRYEEWLHKIEMPFTRVIGLMEYWGMNWDPNLATQ 147 Query: 207 LNQIVDVERTKLDQELESLTYGLVS------SSRCLEKLKTWLFLETGLHL---EDLTET 257 Q ++ + + + ++ + + S ++K+ +F + + + Sbjct: 148 KKQEAEIMQEQAAERIKQIAKETFNIDINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGAS 207 Query: 258 TCQRVLSSNK------------------------------------------------KL 269 Q L + Sbjct: 208 LDQEALIDMAFMLENKLNDIDEEKYLGVSLPENWGNIDPEKDPTLDKLERGAIRIAKREP 267 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL------RGTLQFLGASRTGRWSGCV 323 P Q + + L + + R + + TGR + Sbjct: 268 HPYKEQALEVIDQLKKIQ-KYTTLLSSHIIGREKYLNFMSGRIHAGYSPFTETGRLNSFN 326 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+PRP + +R+ + GK L D +G Sbjct: 327 PNGQNVPRPDNDEFK-------------------------IRNFFVPKPGKILFFIDFSG 361 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 E R++AW +G++ ++ F TG D++ T + + A++ K +R K + Y G Sbjct: 362 FELRLMAWKSGDEVMIELFNTGGDMHRRTASVMTGKSEAEIVKKERTDAKAGNFGISYGG 421 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 A Q + C Sbjct: 422 TEHALQ--------------------------------------FTFKTKYMIRKTLDEC 443 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 ++ A + + R+ E ++ + + Sbjct: 444 AQIVNAVKTAYKRIPEYQRKIVLEARE--------------------------QGYVQTI 477 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620 G + + + R+ VQ + DI+ + ++ Sbjct: 478 YGYMRLLPGINSAN---RRDRGSAERQAANTP------VQGSAADIMKKVQNEIYESIGK 528 Query: 621 --------GYDIVLTVHDEIVCETPDTDEFNA---SMLYHLMTSNPSWAKGLPLKAEGYE 669 D++ +HDEI+ E D E + +M P +P++AEG Sbjct: 529 QEGVLSHGSADMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEGSV 588 Query: 670 SKRYR 674 R+ Sbjct: 589 GYRWG 593 >gi|299116518|emb|CBN74706.1| pol1-like DNA polymerase [Ectocarpus siliculosus] Length = 1473 Score = 164 bits (414), Expect = 5e-38, Method: Composition-based stats. Identities = 65/399 (16%), Positives = 111/399 (27%), Gaps = 97/399 (24%) Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 L L E ++ R+ +L + TGR S QN P Sbjct: 1155 SNFLQPLQELVDEKSRVHCSLNLN--TETGRLSARKPNLQNQP----------------- 1195 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 L+ +R+ A EG LVVAD +E R+LA + + + AF+ G Sbjct: 1196 --------ALEKDQYKIRAAFRAEEGNTLVVADYGQLELRLLAHITDCKSMITAFKEGGC 1247 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + T F+ V K E+ L + + Sbjct: 1248 FHSRTAVGMFDHVKEAVDK--------GEVLLEW------------DYSKGEPPKPLVKD 1287 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 ++ NF + + E + KAW V ++ Q Sbjct: 1288 VFASERRQAKTLNFSIAYGKTGHGLFKDWGVTLKEAEDLVKAWYADRPEVKRWQKQVIQN 1347 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + T GR D+ +N Sbjct: 1348 AKDT--------------------------GFSRTLMGRYRKLPDITSND---RGKVGHG 1378 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDT-D 640 TR +Q + D+ M+ + G+ ++L VHDE++ E P+ Sbjct: 1379 TRAAINTP------IQGGAADVAMVAMIGIVRSPLLKKLGWKLLLQVHDEVILEGPEESA 1432 Query: 641 EFNASMLYHLMTSNPSWA------KGLPLKAEGYESKRY 673 + + M W + L + +K + Sbjct: 1433 KEALAETVRCMQQP--WDGIGLRELRVDLLVDAKSAKTW 1469 Score = 83.6 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 73/302 (24%), Gaps = 57/302 (18%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVE--LWD-CVHDPVMPQ 55 D E S I+L G V + F + P + D + Sbjct: 650 ACDTE-VSEINLKDHGP---VGHGRVTCISIYGGPDLDFGEGPGKILWVDNLGAAAGTLE 705 Query: 56 VLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWI-CTLVLARSNGLPS--- 107 + V HN F+R V+ I + T+ +AR Sbjct: 706 EFLPFFASEKHKKVWHNYGFDRHVMFNSPDNREEQRIDCVGFAGDTMHMARLWDTSMEKY 765 Query: 108 ------ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP------NHREAWR 155 +L+A+ L Q+ KEL + P E Sbjct: 766 AGDTGFSLEALSLKLLGEGQRKTPMKELFGIPKLKKDGTPGNLLVLPPIDEIQTRPEVRP 825 Query: 156 LFGEYCKGDVTVTREIFKRLEPLS----------------SKEQELWYLDQTINDRGYCV 199 F EY D T + + L L + G V Sbjct: 826 RFIEYSAYDAQATWLVHRELMQKLREMSWKDGMTMLDFYEMYYVPFGELLTDMERTGIYV 885 Query: 200 D-VALAHTLNQIVDVERTKLDQEL-----ESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 + + ++ K ++ + + +++T LF G Sbjct: 886 EAKDYLQDIEVQARNDKKKAEETFLNWVKKIQPGAETLNPSSSTQIQTLLF--GGATNPK 943 Query: 254 LT 255 Sbjct: 944 TK 945 >gi|167461235|ref|ZP_02326324.1| Phage-related DNA polymerase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383556|ref|ZP_08057314.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae B-3650] gi|321152024|gb|EFX44960.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae B-3650] Length = 222 Score = 164 bits (414), Expect = 6e-38, Method: Composition-based stats. Identities = 73/266 (27%), Positives = 103/266 (38%), Gaps = 59/266 (22%) Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 V V R GK+ ELALGY G A + M Sbjct: 6 VEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG-------------------------- 39 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 A+E + + AWRQ +S +++LW ++ +A + ++ Sbjct: 40 --------------ALEMGIEEEELQPLVTAWRQSNSNITKLWWDVDRAVKVCVKQKTPT 85 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNNRSYLN-TTTRQLTR 589 + L ++LPSGR L Y G + +Y T++ R Sbjct: 86 ETHG------IKFIYQSGMLFIVLPSGRRLAYVKPRMGENVFGGESVTYEGVGGTKKWER 139 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649 +YG K ENIV A+SRDIL M IV VHDEI+ E + S + Sbjct: 140 IESYGPKFVENIVHAISRDILYHAMQTL--KNCSIVAHVHDEIIIEA--DMRMSFSAICE 195 Query: 650 LMTSNPSWAKGLPLKAEGYESKRYRK 675 M PSWA GL L A+GYE + Y+K Sbjct: 196 QMARTPSWANGLLLSADGYECQFYQK 221 >gi|71668117|ref|XP_820999.1| mitochondrial DNA polymerase I protein A [Trypanosoma cruzi strain CL Brener] gi|70886365|gb|EAN99148.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma cruzi] Length = 927 Score = 164 bits (414), Expect = 6e-38, Method: Composition-based stats. Identities = 89/718 (12%), Positives = 185/718 (25%), Gaps = 170/718 (23%) Query: 9 ETRSPIDLTKCGICKYAE--DVCV--ILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN- 63 ET I G + + + + F +++ +H L LE Sbjct: 296 ETNFSISAKTHGKVHFVRKTNPEMSHLSVQFFVLRWKDDVF-VLHASTALSFLVRVLEEL 354 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 + V IV N+ +L + ++ +++ + A + Q Sbjct: 355 SGVEIVTFNAPSLLLLLLSYKQGNLFTLCVSDIRLMSWMLQPSAGADAF-TDYDVLLQSC 413 Query: 124 EEGKELIARFCKGETHECLYD---RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++ L A F E R L+G+ L Sbjct: 414 QQQIGLAAGFRNMENCTVKEIVCHRVYYMAPLYRLLYGQ---------LGTQGLLPAFLK 464 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY-GLVSSSRCLEKL 239 +E+ + L + G+ V ++ +L + L + + LE+ Sbjct: 465 QEKRISLLCAAMKLNGFPVKLSEVEGFKTRCIARMEELRIAAQKLVPSMPEFNMQNLEEC 524 Query: 240 KTWLFLET-----------------GLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRM 281 + ++ L + + +T + L + R Sbjct: 525 RMAIYEVLQLGTHLTHARNDGTDSCSLTVTKSGKLSTSEETLKLLAPHHELPRLLIAYR- 583 Query: 282 RASRSAVLKLNTLVEAMNS---------DGR-----------------LRGTLQFLGASR 315 + ++ ++E D R L G + Sbjct: 584 KTAKLLQTYTVGMMETAFPFKGNDSEFTDNRIGECSDKKDDTPVKWVTLHPNFVQEG-TD 642 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QNLPR + + +P + R C G Sbjct: 643 TGRLSCVEPNLQNLPR-------------SKVIADNDNSEPYEAEMATFRRCFAVPIGLT 689 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ D IE RV+A ++ + + A D++ F +P V+ ++R + K + Sbjct: 690 LLSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKSP--VSVEERTLAKRV 747 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + Y A + Sbjct: 748 VFGMLYG--------------------------------------------AGPRTLATQ 763 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 V ++ + ++ + Sbjct: 764 MGVPMERALHVMSLFKASYPQIERYQRRVIDQCRT------------------------- 798 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + + +GR D+ + R+ +++Q + D++ GM+ Sbjct: 799 -DGFVRTMTGRIRSLPDINDRVMAKRMY---AERQA------FNSVIQGSAADVMKLGML 848 Query: 616 NATKA-------GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKA 665 + ++ +HDEIV P ++ M S +PL+ Sbjct: 849 AVERDVLQLYNGDVRLLAQIHDEIVLSVPTHKLREVVPLVSRSMMHAVSLL--VPLRV 904 >gi|48696692|ref|YP_024986.1| DNA polymerase I [Vibrio phage VP5] gi|40806155|gb|AAR92073.1| DNA polymerase I [Vibrio phage VP5] Length = 633 Score = 164 bits (414), Expect = 6e-38, Method: Composition-based stats. Identities = 104/714 (14%), Positives = 203/714 (28%), Gaps = 149/714 (20%) Query: 5 FIDFETR--SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 FID D G+ KY D V F+ D +D P Q L E + Sbjct: 14 FIDLTKYEAWAYDTECTGL-KYKVD-KVFGFSVATPDGQSGYFDIREQPDAVQWLVEQAD 71 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--------------SA 108 + TIV HN+ F+ + + +P+ + T + A + Sbjct: 72 SYKGTIVCHNASFDYR-MSLHSGIKLPLSQIDDTGIRACCINEHESTIFPWTRGKAGDYS 130 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 L + + + +QK E + +A G+ N +Y D +T Sbjct: 131 LDYLAKKY-VGAQKYAEIYDELAAMFGGKATRKTQMPNLYRAPSGL--VRKYACPDAELT 187 Query: 169 REIFKRLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 E++ + L + E+++ RG VD+ A +D + Sbjct: 188 LELWLEQQELIAKRGLEKIVAFERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVRENQ 247 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS----------NKKL 269 ++ L + ++++ + + + T ++ Sbjct: 248 AKMFQLAG-REFNPNSPKQVREVFGAKEERGVWTSRDGTVLERTATGNPCLDADALRAMK 306 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL----GASRTGRWSGCVFP 325 P A V R ++ L V + GR+ + + G + TGR S Sbjct: 307 DPLAAAVLELRSNI-KTKDTFLAKHVVEHSVGGRVYPNINQMKGEDGGTGTGRLSYTGPA 365 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 Q +P ++ I+ ++ + EG+ + +D+A E Sbjct: 366 LQQIPSRNKR------------------------IAAIIKPAFLPEEGQLWLDSDMASFE 401 Query: 386 ARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 R+ A + +A+ +L + + P + +A K M L + + Sbjct: 402 VRIFAHLVAAYNPAIARAYAENPELDLHQWVGDLMGIPRNASYSGQANAKQMNLGMIFNR 461 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G A A + G+ + ++ A G Sbjct: 462 GDGAV---ADSLGM-PWEWCEFTDKKGDLIRYKKA---------------------GPEA 496 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + V A+ + V L + E+ + Sbjct: 497 KAVIAAYHTQIQGVKTLATRAQKIAEE--------------------------RGWIQTA 530 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620 GR L + N K + ++QA + D E + A Sbjct: 531 HGRRLRFP---------NGYKSY---------KASGILIQATAADENKENWLRIEDALGS 572 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GYESKRY 673 ++L HD + + + + +PL E K + Sbjct: 573 DGSMILNTHDSYSMSVDENWKPIWERVKKAVER---QTLRVPLLLEFDGVGKNW 623 >gi|158425221|ref|YP_001526513.1| DNA polymerase [Azorhizobium caulinodans ORS 571] gi|158332110|dbj|BAF89595.1| DNA polymerase [Azorhizobium caulinodans ORS 571] Length = 609 Score = 164 bits (414), Expect = 7e-38, Method: Composition-based stats. Identities = 94/703 (13%), Positives = 178/703 (25%), Gaps = 184/703 (26%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV-ELWDCVHDPVMPQVLKE 59 M+ L D ET +D T C +D DD P + Sbjct: 1 MSHLIFDIETNGLLDATNRVHCLCIKDADTGQVWSCTDDGPTGTYIPIERG-------LQ 53 Query: 60 ALENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L + +V + HN F+ L+ + P T+V +R + E Sbjct: 54 LLADAEVL-IGHNILKFDIPALQKVYPWWKPKGVLRDTIVCSRLIWPK---DDLRERDFR 109 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNH---REAWRLFGEYCKGDVTVTREIFKRL 175 ++ + LI R+ L + + +YC+ DV VT +++++ Sbjct: 110 LQKQGKLPGNLIGRYALEAWGYRLGEYKGDYKGPWDVWSQEMQDYCEQDVEVTFRLYQKI 169 Query: 176 EPL------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + E + ++ G+ D A A +L + +T+L+ EL+S Sbjct: 170 KEKGWKEESIELEHRVQWIIHRQEQYGFLFDQAKAASLYADLVQRKTELEAELQSAFPPW 229 Query: 230 V-----------------------------SSSRCLEKLKTWLFLETGLHL----EDLTE 256 + + L + G ++ Sbjct: 230 EVESVFVPKVNNRVRGYVKGVPFTKRRTIHFKPSSRDHIAGRLKAKYGWEPSEFTDEGKP 289 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGA 313 + VLS P+A ++ + + + ++ + +DGR+ G + GA Sbjct: 290 KVDEDVLSHLP--YPEA-KLLSEYLMVEKRLGQIATGKEAWLKHVKADGRIHGDVTTNGA 346 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 TGR + +P R +A++ Sbjct: 347 -VTGRMTHSKPNIAQVPGNGSP------------------------YGHRCRELFVAAKR 381 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 K LV D +E R LA Sbjct: 382 KLLVGCDADALELRCLA------------------------------------------- 398 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 Y GGA + L + K + + + Sbjct: 399 --GYMARYDGGAYVRTVLEGKKELGTDMHTLNAKALGCSRDVAKVWFYAFIYGAGDFKLG 456 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 ++ + R + + +K Sbjct: 457 TILGAPKGEEQKWGRRSRARF----------------------LKALPALGTIIKKVQEK 494 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + L GR L R + ++Q+ ++ Sbjct: 495 VQKKGFLRGLDGRELRVRSAHS---------------------AFNTLLQSAGAVLMKMA 533 Query: 614 MMNATK----AGYDI------VLTVHDEIVCETPDTDEFNASM 646 ++ + AGY V VHDE E + + Sbjct: 534 LVLLDEDLQAAGYVPGQHYEFVANVHDEWQIEVNEEIAEDVGK 576 >gi|333023285|ref|ZP_08451349.1| putative gp44 [Streptomyces sp. Tu6071] gi|332743137|gb|EGJ73578.1| putative gp44 [Streptomyces sp. Tu6071] Length = 624 Score = 163 bits (413), Expect = 7e-38, Method: Composition-based stats. Identities = 96/662 (14%), Positives = 183/662 (27%), Gaps = 151/662 (22%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65 D ET + L FG + + + AL +++ Sbjct: 42 FDTETTGLDW------WNWGNGFHCRLAQFG-NRSEAYVLPVERGTKFASAARIALRDSE 94 Query: 66 VTIVAHN-SYFERTVLKACFNLDIPI--HRWICTLVLARSNGL--------PSALKAVGE 114 ++ HN + F+ V + + + + I T + + L+ + + Sbjct: 95 R-VITHNGASFDAHVAEVALGIPMEQLSPKIIDTKPTSHLVDPRAVKEGGPGAKLEELIK 153 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + EE K + K + + F Y D +F Sbjct: 154 FY-IDAGAAEEVKGSMTALAKKYKV--KKEEIWSLVDLFDKDFLLYAGMDPVWAFRLFDI 210 Query: 175 LEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L E Y+ + GY D+ A + ++ + + + ++ Sbjct: 211 LYHKIPSRSMQKGLFAWEHRTAYVTSLMERTGYAHDLEYAERECVNLTNQQREWESKAQT 270 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280 L V + +++ L + G L T+ + VL+S P + N Sbjct: 271 L---GVENVNSNQQIIDRLTV-LGYKLTKKTKKGNISVDDDVLTSIA--HPLTEAIVNA- 323 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 +A + + ++ + +GR+ ++ A P Q LP Sbjct: 324 KKAGKWRKTWFESAIKGRDKNGRVHCSINSCQARTARMTITGAIPAQTLPAGDPYVRHEF 383 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + + E D + +E RV+A +G+ L Sbjct: 384 LADAAVLGENGE----------------VLEEEHVSCSIDFSNMELRVMAAASGDPVMLD 427 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV-MELALGYQGGAKAFQKMASTTGLNL 459 AF G DL+ T +F P +TK + A+G+ GG KA Sbjct: 428 AFNRGIDLHNITAIAAFGPMPEGMTKHPKRKAGKGTNFAVGFGGGWKAVTD--------- 478 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 ++ +A+ + V Sbjct: 479 -----------------------------------GFGVPEPDAKKAVEAFWGTYKGVKR 503 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++L + +T A GR + Sbjct: 504 FADQLQRQAIRTGHIYTAT--------------------------GRRIPVDK------- 530 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCETP 637 Y +Q+ +RDI ++ KAGY + L +HDEIV P Sbjct: 531 ----------TRPYA--ALNYYIQSSARDITVRALLELHKAGYTPWMRLVIHDEIVFSFP 578 Query: 638 DT 639 + Sbjct: 579 KS 580 >gi|149916870|ref|ZP_01905371.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1] gi|149822148|gb|EDM81539.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1] Length = 590 Score = 163 bits (413), Expect = 7e-38, Method: Composition-based stats. Identities = 59/397 (14%), Positives = 111/397 (27%), Gaps = 110/397 (27%) Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + + +++D R+R L L A+ +GR+S Q +P Sbjct: 297 LDKLVSTYRWWARDFVDADRRIRCRLHPL-AADSGRFSCTEPNLQQVPS----------- 344 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 + + +R+C + + G +L+VAD A IE RV A +A F Sbjct: 345 ---------------EYTAPGLRACFVPAPGHRLIVADYAQIELRVAAHLAPCDALGAVF 389 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D + T A +V +R + K + + GA+ F+ A++ Sbjct: 390 RAGRDPHRATAATLTGKPEPEVESHERKLAKAVNFGFLFGMGARRFRSYAAS-------- 441 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 ++A+ + ++ Sbjct: 442 ------------------------------GYGLDLDERQAAEAREAFFRTFPGIAAWH- 470 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 R V + + D + + GR + Sbjct: 471 ---------------------RRVGALSRRGDHEAITVTTAMGRRKTFP----------- 498 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPD 638 R VQ + + M+ + G VL VHDE + E P+ Sbjct: 499 ----AGRFSFNA--ALNIPVQGTAAEGFKAAMIRLHRELPSIGGRGVLVVHDEYLAEVPE 552 Query: 639 TDEFNASMLYHL-MTSNP-SWAKGLPLKAEGYESKRY 673 + M + +P+ E + + Sbjct: 553 ARAEEGKAMVEAHMIAAMGELVHTVPIVVEAEIAAHW 589 >gi|325171249|ref|YP_004251221.1| putative DNA polymerase [Vibrio phage ICP2] gi|323512275|gb|ADX87732.1| putative DNA polymerase [Vibrio phage ICP2] gi|323512343|gb|ADX87799.1| putative DNA polymerase [Vibrio phage ICP2_2006_A] Length = 710 Score = 163 bits (413), Expect = 8e-38, Method: Composition-based stats. Identities = 85/756 (11%), Positives = 187/756 (24%), Gaps = 161/756 (21%) Query: 4 LFIDFETRSPI-DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L D ET D+ K + ++ F D + H P +++ E Sbjct: 17 LSFDCETTIRNHDIGKLQASPFHPANKMVCFGCKTLDAEPVVLRPEHAD-FPTIIR---E 72 Query: 63 NTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKL 118 N + +V N F+ + F +P T + G + ++ Sbjct: 73 NGVLLLVGQNIKFDLLWMMRTYPDFRDMLPNLCIWDTQLAEYLLTGQDHKMASL------ 126 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR--EIFKRLE 176 + M+ G L + + P + +Y + + ++ + ++ Sbjct: 127 NELAMKYGGTLKDDRIAEFWKAGVDTSDIPF--PMLEEYQKYDVINTEIVFLEQVDQIIK 184 Query: 177 PLS----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + + + G D LA L + + E + + S+ + Sbjct: 185 EGLLNLTMTQMDALMATTEMEWHGMKFDKDLALELAKPLQAEIEDIKGAVSSVMEAVGFP 244 Query: 233 SRC---------------------------------------------------LEKLKT 241 K Sbjct: 245 KDSINVGSNSQISALIFGGEVKYKEKDYIYNDDGTIATFKGGARAGQPKTKIFERSKRIE 304 Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLT-------PQAIQVFNNRMRASRSAVLKLNTL 294 L ++ + LS K + R + Sbjct: 305 GLCKPISPKGKNGSYPVGDDSLSKVKAKYKGDAVVEQLVGDILKFRQ-LEKDVNTYYIGY 363 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + DG L G + TGR S QN+ S S ++L + Sbjct: 364 ASQVFPDGCLHGNYN-HTKTGTGRLSSSSPNLQNI---SNSGKDLQRKNNKTTQRFHMSD 419 Query: 355 DPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 ++ C+I+ K++ D + +E A + G+ K G D + + Sbjct: 420 ---------IKRCIISRFPNGKIMECDFSQLEVVGGAVLTGDPMMKKDIIEGVDTHCMSA 470 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + + E+ GY + Sbjct: 471 SWAN------------PKYSYEEILAGY---------------------KAEDPFFTKLR 497 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + NF A + + + +++ + + +++ + ++ + Sbjct: 498 KNAKPVNFALQYGAGAETAAENAGIEVEQAQAIIDNYYKRYCVLKQFQDDVIEQVNKSRQ 557 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 P+GR + + R+ Sbjct: 558 PSSRRTEMGM----------PAGRGEYRNPTGRIFTFYEYDAPEF----LRRRGQMTSFS 603 Query: 594 GGKLTENIVQAVS-RDILAEGMMNATKA---------GYDIVLTVHDEIVCETPDTDEFN 643 + Q+ + DI+ + + K ++ TVHD +V + Sbjct: 604 PTQCKNYPTQSFATGDIVPMMLGHIYKLLMTDKTLRDKCLLIGTVHDSVVFDVHPDILDY 663 Query: 644 ASMLYH-LMTSNPSWAK-------GLPLKAEGYESK 671 A+ LM P + + +PL + + Sbjct: 664 AAKAVRGLMLRTPEYVERYLKVPFDMPLACDVDIGE 699 >gi|48696650|ref|YP_024429.1| DNA polymerase I [Vibrio phage VP2] gi|40950048|gb|AAR97639.1| DNA polymerase I [Vibrio phage VP2] Length = 633 Score = 163 bits (413), Expect = 8e-38, Method: Composition-based stats. Identities = 106/716 (14%), Positives = 204/716 (28%), Gaps = 153/716 (21%) Query: 5 FIDFETR--SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 FID D G+ KY D V F+ D +D P Q L E + Sbjct: 14 FIDLTKYEAWAYDTECTGL-KYKVD-KVFGFSVATPDGQSGYFDIREQPDAVQWLVEQAD 71 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--------------SA 108 + TIV HN+ F+ + + +P+ + T + A + Sbjct: 72 SYKGTIVCHNASFDYR-MSLHSGIKLPLSQIDDTGIRACCINEHESTIFPWTRGKAGDYS 130 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 L + + + +QK E + +A G+ N +Y D +T Sbjct: 131 LDYLAKKY-VGAQKYAEIYDELAAMFGGKATRKTQMPNLYRAPSGL--VRKYACPDAELT 187 Query: 169 REIFKRLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 E++ + L + E+++ RG VD+ A +D + Sbjct: 188 LELWLEQQELIAKRGLEKIVAFERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVRENQ 247 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT------------CQRVLSSNK 267 ++ L + ++++ + + + T L + K Sbjct: 248 AKMFQLAG-REFNPNSPKQVREVFGAKEERGVWTSRDGTILERTATGNPCLDADALRAMK 306 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL----GASRTGRWSGCV 323 P A V R ++ L V + GR+ + + G + TGR S Sbjct: 307 D--PLAAAVLELRSNI-KTKDTFLAKHVVEHSVGGRVYPNINQMKGEDGGTGTGRLSYTG 363 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 Q +P ++ I+ ++ + EG+ + +D+A Sbjct: 364 PALQQIPSRNKR------------------------IAAIIKPAFLPEEGQLWLDSDMAS 399 Query: 384 IEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R+ A + +A+ +L + + P + +A K M L + + Sbjct: 400 FEVRIFAHLVAAYNPAIARAYAENPELDLHQWVGDLMGIPRNASYSGQANAKQMNLGMIF 459 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 G A A + G+ + ++ A G Sbjct: 460 NRGDGAV---ADSLGM-PWEWCEFTDKKGDLIRYKKA---------------------GP 494 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 + V A+ + V L + E+ + Sbjct: 495 EAKAVIAAYHTQIQGVKTLATRAQKIAEE--------------------------RGWIQ 528 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620 GR L + N K + ++QA + D E + A Sbjct: 529 TAHGRRLRFP---------NGYKSY---------KASGILIQATAADENKENWLRIEDAL 570 Query: 621 --GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GYESKRY 673 ++L HD + + + + +PL E K + Sbjct: 571 GSDGSMILNTHDSYSMSVDENWKPIWERVKKAVER---QTLRVPLLLEFDGVGKNW 623 >gi|847765|gb|AAC44593.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155] Length = 242 Score = 163 bits (412), Expect = 9e-38, Method: Composition-based stats. Identities = 50/318 (15%), Positives = 99/318 (31%), Gaps = 89/318 (27%) Query: 364 VRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG +L+ AD + IE R++A ++ + ++AF TGEDL+ +R+F+V Sbjct: 1 IRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFSVPID 60 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT + R K M L GL+ Sbjct: 61 EVTPELRRRVKAMSYGL--------------AYGLS------------------------ 82 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 A + + + + + V + ++ + Sbjct: 83 ------AYGVAQQLKISTEEAKVQMEQYFDRFGGVRDYLRDVVDQARK------------ 124 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 + GR ++ ++ R + Sbjct: 125 --------------DGYTSTVLGRRRYLPELDSSN---RQVREAAERAALNAP------I 161 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655 Q + DI+ M+N +A I+L VHDE++ E + + L M + Sbjct: 162 QGSAADIIKVAMINVDQAIKDAGLRSRILLQVHDELLFEVSEGERGELEQLVREHMGNA- 220 Query: 656 SWAKGLPLKAEGYESKRY 673 + +PL+ + + Sbjct: 221 -YPLDVPLEVSVGYGRSW 237 >gi|195145962|ref|XP_002013959.1| GL23113 [Drosophila persimilis] gi|194102902|gb|EDW24945.1| GL23113 [Drosophila persimilis] Length = 2193 Score = 162 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 97/667 (14%), Positives = 195/667 (29%), Gaps = 134/667 (20%) Query: 30 VILFAFGFDDHPVELWDC--VHDPVMPQVLK-----EALENTDVTIVAHNSYFERTVLKA 82 + +F D+ V +P LK + ++ ++T++ H++ + L Sbjct: 1632 IAGLSFCLADNVVYYMCMQEEEGQQVPTRLKVQELCKLMDRPELTLLVHDAKEQVKALLH 1691 Query: 83 ----CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CK 135 N+ I V K K + +F C Sbjct: 1692 GVPQLQNIGIK---VEDPKVGHWLLEP---------------DKTVSFKNMCQQFAPECT 1733 Query: 136 GETHECLYDRNKPNHREAWRLF---GEYCKGDVTVTREIFKRLEPLSSK---EQELWYLD 189 + C R +H + VT I K + E + + Sbjct: 1734 ALANLCGSGRGYSSHGLDSSSAILPKLRASIEACVTVHILKGQIENLERIEVEMPIQIVL 1793 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G+ L + + K++ ++ + + + + L L Sbjct: 1794 CRMECVGFPAKHQRMGRLIKHMLDTLNKVEIKIYKMHGSK-FNLGSTQAVANVLGLHRK- 1851 Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 +T ++VL P + + N+R + + V + L+ R+ G Sbjct: 1852 --PHGRVSTSRQVLEKLGS--PISELILNHR-KLNMQIVKGMQPLIR-CCKANRIHGHSI 1905 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 A+ GR S QN+ ++ + S RS Sbjct: 1906 THTAT--GRISMSEPNLQNV----AKDFDIRMGPDSVRISC--------------RSVFK 1945 Query: 370 A-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 + E + L+ AD +E R+LA ++ ++ + + +DL+ A ++ A+VT+ Sbjct: 1946 SMDEKRCLLSADFCQLEMRILAHLSQDKALVSVMNSPQDLFTAIAAHWNHIPEAEVTEQM 2005 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R+ K + + Y G ++ L + + + + + + Sbjct: 2006 RSGTKQICYGIVYGMGMRSLGD-----ALQCTESEAQLICEQFHQSYPGIRAYTEKVLKF 2060 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + + G R +S L + + T G A KR Sbjct: 2061 ARKLGYVETITGR--RRYLD---HINSGEQNLIKQAERQAVNTTIQGSAADIAKR----- 2110 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 L + GR ++ +G EN +Q Sbjct: 2111 -------AILDMDKNIGR--YWKKLGVE----------------------ENSIQ----- 2134 Query: 609 ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEG 667 +VL +HDE+V E P+ + L M S +PLK + Sbjct: 2135 ---------------LVLHIHDELVYEVPEAKAKRIAKFLGLTMESIGKGKLTVPLKVKI 2179 Query: 668 YESKRYR 674 + + Sbjct: 2180 KMGESWG 2186 >gi|294887455|ref|XP_002772118.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983] gi|239876056|gb|EER03934.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983] Length = 940 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 60/418 (14%), Positives = 112/418 (26%), Gaps = 99/418 (23%) Query: 273 AIQVFNNRMRASRSA---VLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 ++ + R+ R + L+ L+E + + DG R + TGR Q Sbjct: 600 VCRLLWHLQRSIRISAAITSVLSPLIERIKYDEDGFGRIHPSLALDTTTGRLCCRKPNLQ 659 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N P +R A G L+V D + +E R Sbjct: 660 NPPSAHNDL-------------------------YSIRKAFSARPGNTLIVGDYSQLELR 694 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA M+ + ++ G D++ F + + + Sbjct: 695 ILAHMSRCESMIRQLNQGGDIHSQCAVDLF-----------PEVAEAVANG--------- 734 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + + S + NF + A E T + Sbjct: 735 --SVVIDDAEAHPGIPSVKTKFSTQRQQAKVMNFSIAYGKTERTLAEEMDLPVTDIRDMF 792 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 W V E+ Q T + GR Sbjct: 793 TRWNNSKKGVERWKAEIIQQARDTQHATSVL--------------------------GRH 826 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AG 621 + + + L + + R ++Q + DI M+ + G Sbjct: 827 RRFPHIKHR---LRKYSGRSERAA------VNFVIQGSAADIAMMAMLRVDRDERLRRMG 877 Query: 622 YDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN-----PSWAKGLPLKAEGYESKRY 673 + IV+ VHDE++ E P + ++ LM P + + L + + Sbjct: 878 FKIVMQVHDEVILEGPAENATDAVPIVRDLMEHPFADIKPDYRMLINLDVDIATGTNW 935 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 41/358 (11%), Positives = 78/358 (21%), Gaps = 122/358 (34%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILF-AFG-----FDDHPVELWDCVHDPV-MPQVLKE 59 D E ++LT+ ++ AFG F P+ DC + + + Sbjct: 150 DTE-FWNVELTRNTPAH--SSGELLCLTAFGGGKLDFGSGPLLFVDCKGPSRHVLDLFRS 206 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPSA---------- 108 EN + HN + VL + I + T LAR + Sbjct: 207 YFENPAKRKIFHNFAADAHVL---YGHGITVRGLEADTRYLARLFDSSLSSWEDQVQPEK 263 Query: 109 ----------------------------LKAVGEALKLSSQKMEEGKELIARFC------ 134 L + K + K L++ F Sbjct: 264 PPLLLRKSKTSTTKEALIDEGGDIFSTPLNDCEQHSG--PGKGYQLKRLVSLFGIAPKEP 321 Query: 135 -----KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---------- 179 K + E + + +Y D T +++RL Sbjct: 322 PSFKEKFAGRLGIGGLEAHCSEEKFGEWLKYAADDAYFTFMLYRRLTDTLRGQEWCTELH 381 Query: 180 ----------------------------------SKEQELWYLDQTINDRGYCVDVALAH 205 + L I RG+ + Sbjct: 382 WQPIREKIRHGTTTFNGMNDPETYTGLSMSDFAVKFYRPFTELLVEIERRGFGANREYLI 441 Query: 206 TLNQIVDVERTKLDQELESLTYG-------------LVSSSRCLEKLKTWLFLETGLH 250 + + ++ + R ++++ LF Sbjct: 442 QQLTAAQADLQRHKDAFRTIAQSLKDRRGQPLNPQAEFINPRSAKQIRQLLFGNPDEP 499 >gi|303271985|ref|XP_003055354.1| helicase/polymerase domain-containing protein [Micromonas pusilla CCMP1545] gi|226463328|gb|EEH60606.1| helicase/polymerase domain-containing protein [Micromonas pusilla CCMP1545] Length = 1996 Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats. Identities = 86/746 (11%), Positives = 166/746 (22%), Gaps = 182/746 (24%) Query: 31 ILFAFGFDDHP--VELWDCVHDPVMPQ--------VLKEALENTDVTIVAHNSYFERTVL 80 + A F +P V VH +++ L + V V + Sbjct: 1324 VGIALSFPFNPLAVFYAPIVHGAGGGGATRGLPWTRVRDVLSRSGVGKVTV----DLKPQ 1379 Query: 81 KACFNLDIPIH-RWICTLVLARSNGLPSALKAVGEALKLSSQKMEE-------------- 125 I + + A L + + Sbjct: 1380 LRAMGAGATIAAPVVDVKIAAWVLHPDEELLKYSSQTGWDALNAVDPDRARGPCAGMLER 1439 Query: 126 -----GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL-- 178 + I K D A D V ++ P Sbjct: 1440 FAGDVDADAIRAASKWRGPRATADGVNAGGANAAFAVASALSLDALVRAKLADPRAPSGL 1499 Query: 179 ----SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL-----------E 223 + E L + ++ G A + +++ E Sbjct: 1500 EDALRAIEMPLVPVLASMERAGVAFAPATLSRQLRRATKRVREIETEAVAVVATHFACRH 1559 Query: 224 SLTYGLVSSSRCLEKLKTWLFLE----TGLHLEDLTETTCQ---------RVLS------ 264 + + + LF G + T +L+ Sbjct: 1560 PGMAPPEFNLASSDDVARVLFDAPPAGLGAEPPRGAKPTAARGRRSTRQDDLLALVREQG 1619 Query: 265 -------SNKKLTPQAIQVFNNRMR---ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 ++ + ++S + + RLRG + + Sbjct: 1620 GPIAAFPKLVLEHRSLRKLLDEANEFGRLAKSELGGDAAAAADESVTIRLRGVIHQTN-T 1678 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP-DPLQIISDCVRSCVIASEG 373 TGR + Q +PRP + S D + +R+ A G Sbjct: 1679 GTGRLAMEDPNLQCVPRPREFALSRAYPERLSASGRVSPGTDAGAEETLAIRNAFRAPRG 1738 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV---TTYARSFNVAPAQVTKDQRA 430 KKL+ D IE RV+A ++ ++ + A + P V+ + RA Sbjct: 1739 KKLIAFDYKQIELRVIAHLSCDRGLIAALCVRSVDPFKVIAARWKGDGTTPKNVSDEDRA 1798 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + Y G +Q+ + + E + + ++ Sbjct: 1799 KAKELCYGICYGAGVGRYQQ-----AMGVTELEARAAIEDFKRSLPGVERWKSALVKDAR 1853 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 E + V IA + R +P + Sbjct: 1854 E--------------------RTPPHVR-------------------TIAGRCRFLPSLN 1874 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 R+ Q + DI+ Sbjct: 1875 ATGAGGE-------------------------IRAADERKAI------NTACQGSAADIV 1903 Query: 611 AEGMMNATKA--------------------GYDIVLTVHDEIVCETPDTDEF-NASMLYH 649 M+ ++VL VHDE++ E + + Sbjct: 1904 KRVMIELHAKLTSGGGADDDDEWAPLREVDACEMVLQVHDELLFEVDERKVDVAVRAIRG 1963 Query: 650 LMTSNPS-WAKGLPLKAEGYESKRYR 674 +M +PL + Sbjct: 1964 VMERAREVHDMKVPLPVRVSVGDDWG 1989 >gi|317487299|ref|ZP_07946094.1| DNA polymerase family A [Bilophila wadsworthia 3_1_6] gi|316921489|gb|EFV42780.1| DNA polymerase family A [Bilophila wadsworthia 3_1_6] Length = 626 Score = 161 bits (406), Expect = 5e-37, Method: Composition-based stats. Identities = 97/704 (13%), Positives = 185/704 (26%), Gaps = 195/704 (27%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L D ET +D T C A+D + +F F + +L + Sbjct: 26 LLFDIETDGLLDETSTIHCICAKDF-LTGESFSFGPGEI--------EDGLGLLCQ---- 72 Query: 64 TDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG------EAL 116 +VAHN F+ ++ + + + R TL +R + LK + ++ Sbjct: 73 -SRLLVAHNGLCFDIPAIQK-LHPSLLLPRLFDTLTASRLI--WTNLKDLDFTQLRKKSC 128 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRL 175 + K+ L A + + Y + N W YC+ DV V +++ + Sbjct: 129 RFPP-KLAGSHSLDAWGQRLGVMKGDYGKTTENAWSRWSEDMQRYCEQDVEVLEALYRHI 187 Query: 176 ------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL---------DQ 220 + E E + G D A +L + +R + Sbjct: 188 LDQRYSPEALALEHEFQAVIFHQERTGVWFDERAAQSLYAELAAKRNDAVTALQEVFPQK 247 Query: 221 ELESLT--------------------YGLVSSSRCLEKLKTWLFLETGLHL----EDLTE 256 +E + + +++ L + G + Sbjct: 248 RIEEIFIPKANNRTRGYVKGVPFTKVRYETFNPASRQQIADRLMEKHGWKPSEFTDTGQP 307 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGA 313 + VL+S P+ + + + + N ++ + DGR+ G + GA Sbjct: 308 KVDEDVLASLP--FPECKPLVDY-LELLKIIGMLAEGKNGWLKLVGPDGRIHGRVITNGA 364 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 TGR + +P + + R+ A Sbjct: 365 -VTGRCTHNSPNLAQIPARGQYGK-------------------------QCRALFAAPPP 398 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 V AD +G+E R+LA A++ G V + R K Sbjct: 399 LVQVGADASGLELRMLAHYL------AAYDGGAYAKVLLEGDIHTANQHAAGLETRDNAK 452 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 A Y G + + + + Sbjct: 453 TFIYAFLYGAGDEKLGSIVAPLASSA---------------------------------- 478 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 +K + + + L +++ G KR + + Sbjct: 479 ----VQTKRGRALKDRFFRSLPAIKRLIDDVQ---------GVLTGPGKRPYLIGI---- 521 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 GR L R + ++Q+ ++ Sbjct: 522 ----------DGRHLHIRSSHS---------------------ALNTLLQSAGAVLMKLA 550 Query: 614 MM----NATKAGYDI------VLTVHDEIVCETPDTDEFNASML 647 + A + G + VL VHDE T L Sbjct: 551 TVIFHMEAQRRGLRLGEDYAQVLHVHDEAQFNTTPEKADALGKL 594 >gi|56693107|ref|YP_164694.1| hypothetical protein LP65_gp059 [Lactobacillus phage LP65] gi|54633608|gb|AAV35879.1| orf59 [Lactobacillus phage LP65] Length = 988 Score = 160 bits (405), Expect = 7e-37, Method: Composition-based stats. Identities = 90/779 (11%), Positives = 193/779 (24%), Gaps = 238/779 (30%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51 + IDFET + + + + + + DH + Sbjct: 198 KIIGIDFETNTLESWRT--------NARMTMMSISWKDHQGVVIPIDKTGFQPFSEEEKQ 249 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS---- 107 + + + ++ + V HN F+ T+LK LD + I T V+ G Sbjct: 250 DIKHNVNQIFKSDKIWKVLHNGKFDITMLKDVNGLD-RSIKCIDTEVM-YYVGFSQAKKV 307 Query: 108 --ALKAVGEA--------------------------LKLSSQKMEEGKELIARFCKGETH 139 LK + A +K + EL + Sbjct: 308 KKGLKQIARAFTDMGGYEQPLEEFKNEYLEKHYKNWYNAEIEKYRKALELEGKDPDKAKV 367 Query: 140 ECLYDR---------NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-- 188 + + Y D VT +F ++ K + L Sbjct: 368 SKKDYKAPTNEIDGGKFNYDWIDMEVQFPYAAADADVTLRLFNKMVGRIKKNRAWVNLVF 427 Query: 189 ---------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL----ESLTYGLVSSSRC 235 TI G +D+ L+ R + E+ + Sbjct: 428 NIFPRLNDALTTIEHNGIKLDMERNRELHDKYVKHRDDMKNEILSTIPEIKMIEKERLNF 487 Query: 236 --------------------------------------------LEKLKTWLFLETGLHL 251 +K L+ G L Sbjct: 488 AMEREQIKKIKPADRTKEQKQKFKDYAKNCTGKDGVPNYKFKFTPNDMKRLLYDVLGYEL 547 Query: 252 ED--------------LTETTCQRVLSSNKKLTP-QAIQVFNNRMRASRSAVLKLNTLVE 296 + + + ++ + I +++ +A + ++ L E Sbjct: 548 PQEPPYVTGNPKNITWKSYSVGKAAQEYLEETYKTKFIDLYSKYSKAETALGSFIDKLPE 607 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + D ++ + + S F QN R + + + + Sbjct: 608 VRDKDDFVKPSFNPYVTETSRLSSSGAFNAQNQTRRTDNPNDFNYSYG------------ 655 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 + RS +G L+ D + +E +A ++ ++ +A +D++ + Sbjct: 656 ---VKSMYRSRF---KGGILLNMDYSALEIYTMAMLSKDRNMTQALLDHKDIHKHNASLG 709 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F+V +VTK+ R K + + Y G K Sbjct: 710 FHVPYDEVTKNLRTSAKKVSFGIPYSMGIKTL---------------------------- 741 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 A + +R+ A +V + + + + Sbjct: 742 ----------------AKDLGVDEKEAQRIYDAILATMPQVKQAMADSQEFAARYK---- 781 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 +G +V + L + R+ Sbjct: 782 ----------------------YAETLNGFRRDLSNVDS---ILKDVRAKAKRQA----- 811 Query: 597 LTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLYH 649 +Q +I+ G+++ + I+ TVHD I+ + + + Sbjct: 812 -FNTEIQGSGSNIVNLGLISVHEQFCKRNLKSKIIATVHDSILLDVYPPELAEVYAVVK 869 >gi|157111398|ref|XP_001651546.1| DNA polymerase theta [Aedes aegypti] gi|108878374|gb|EAT42599.1| DNA polymerase theta [Aedes aegypti] Length = 1987 Score = 160 bits (404), Expect = 8e-37, Method: Composition-based stats. Identities = 88/686 (12%), Positives = 187/686 (27%), Gaps = 145/686 (21%) Query: 26 EDVCVILFAFGF-----DDHP--VELWDCVHDPVMP-----QVLKEALENTDVTIVAHNS 73 ++ + AF F DD V + + +L LE +VT+ +++ Sbjct: 1403 DNFYLSGAAFTFPEAGGDDSENVVYYVNLRKSGAVKCDQKKSMLGRLLERENVTVDMYDA 1462 Query: 74 YFERTVLKACFNLDIP---IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 + V+ L + I V + + + Q E L Sbjct: 1463 KEQLKVIYRSGLLSLEQEVIASLRDPKVACWLLQAEEKVIPLQA---MVQQYCPELTTLC 1519 Query: 131 ARFCKGETHECLYDRNKPNHREAW----RLFGEYCKGDVTVTR--EIFKRLEPLSSKEQE 184 + F +T+ ++ + E L + Q Sbjct: 1520 QMAGRCPGSTGPSSNYMSTIDAKIRCTVESFLVTHLIRAQITQFDQLDRTQEMLPTFVQR 1579 Query: 185 LWYL---DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 + + G+ D L + + V + ++ + + +L G + ++ Sbjct: 1580 EMPIHGALARMELVGFPADANKLAHLIERLKVAQERISERVRTLNGGRRLNFASTSEVAA 1639 Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 L + + TC++VL +P A V R S + + L A+ Sbjct: 1640 ALKVPRERNGRVK---TCRQVLEKI--DSPLATLVIAYRKIESNLSRT-IEPLYRAIRDG 1693 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 R+ G + TGR S Q + + + DP + Sbjct: 1694 KRIYG--NSYCFTSTGRISMHEPNLQTVVK-----------------DFKVEIDPGHVEV 1734 Query: 362 DCVRSCV-IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 RS +S + L+ AD +E VL ++ ++ L G+D++ A+ + Sbjct: 1735 FSCRSTFACSSPDRILLSADFCQLELCVLTHLSQDRKLLAVMNGGKDVFRGIAAKWNRIE 1794 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 + D+ + A Sbjct: 1795 DEALVSDE-------------------------------------------LRNYTKAIV 1811 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + A E + + + + + +++ Q + Sbjct: 1812 YGVIYGMGAKSMAAELNVDEDMACTLMEQFHSTYPEIRRYADKVIQVTRE---------- 1861 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 + +GR + + + + R+ Sbjct: 1862 ----------------RGYIETLTGRRRYLPAIHSTDMKKRS---EAERQA------VCT 1896 Query: 601 IVQAVSRDILAEGMMNATK--AGYD---------IVLTVHDEIVCETPDTDEFNASML-Y 648 VQ + DIL ++ + Y +VL +HDE++ E P + + Sbjct: 1897 TVQGSAADILKNAILRMMRNLRKYRQTLRLGQVELVLHMHDELIFEVPRDQSRKVAKILK 1956 Query: 649 HLMTSNPSWAKGLPLKAEGYESKRYR 674 M + LPL+ + + Sbjct: 1957 SSMENCAK--LSLPLRVKVKMGASWG 1980 >gi|328782961|ref|XP_001120279.2| PREDICTED: DNA polymerase theta [Apis mellifera] Length = 1864 Score = 160 bits (404), Expect = 8e-37, Method: Composition-based stats. Identities = 87/667 (13%), Positives = 184/667 (27%), Gaps = 128/667 (19%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMP-------QVLKEALEN----------TDVTIV 69 D + A ++ + ++ + ++ KE L N ++ Sbjct: 1281 DKKLYGAAIAWESNIAYYISFSNEQDLKISGKEQMKLFKELLANTILYVKCFATKEIFKT 1340 Query: 70 AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALK----LSSQK 122 L C + I +++ V + + +K Sbjct: 1341 ----------LYECCGI-IASCKFLDPKVANWLYDGNIYEKTFNDMVKEYFPQGCFIIKK 1389 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK-RLEPLSSK 181 M + C R +W + + ++ L Sbjct: 1390 MGTCYDTGPGLCIKSAIPGEL-RACAEAVLSWHM----ADKLIDKLEQLSPTLLYTFKDI 1444 Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E ++ L + G V + L+ ++ E L++ +L + +++ Sbjct: 1445 EMKIIILLAYMELTGLGVCLKSLQDLSSVIREEMISLEERAYALCGKK-FNFSSSKEVGE 1503 Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 L L G + + + VL + P + + + + + + L+ Sbjct: 1504 ILGLYKGKKI-----SVNKAVL--GQSDHP-ISNLVMSWRKLNVTKSKIIYPLLNLAQHS 1555 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 R+ G + ++ TGR S QN+PR + Sbjct: 1556 SRIHGNC--VTSTLTGRISMHEPNLQNVPR--------------------DFNSKDNSFT 1593 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 VR I + G ++ AD +E R+LA + + D++ A+ +V+ Sbjct: 1594 ISVRMAFIPTVGNIILSADYCQLELRILAHFSKDTILCNIMRKPGDIFKNIAAKWNHVSE 1653 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 +V R K + + Y G K + L+++ S + + Sbjct: 1654 NEVDDKMRRHTKQLCYGMIYGMGVKTLAE-----NLSVDEVKAKEFLESFMNAYPGISKW 1708 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + E + + R+ + + + T G A Sbjct: 1709 LNNVLEEARINGYITTIL--ERRRMFPGLTSINPMEKS---QAERQAVNTKVQGSAADIV 1763 Query: 542 KRRDV---PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 K+ + + + + I+ S R L + S Sbjct: 1764 KKAMIDIEKRMRFEFSTSLPIMPANSSRKLR------SNSKETQ---------------- 1801 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSW 657 K GY +VL +HDE++ E D + + M Sbjct: 1802 -------------------HKGGY-LVLQLHDELLYEVNIYDLRQVATIVKESMEQVCQL 1841 Query: 658 AKGLPLK 664 LP+K Sbjct: 1842 TVPLPVK 1848 >gi|261327618|emb|CBH10594.1| mitochondrial DNA polymerase I protein A,putative [Trypanosoma brucei gambiense DAL972] Length = 958 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 84/696 (12%), Positives = 170/696 (24%), Gaps = 170/696 (24%) Query: 20 GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV 79 G+ + V + D V ++ + + E L V IV N+ Sbjct: 304 GVNPELSHLEVSFLVVRWKD-DVIVYSAAVGLELLVRVAEEL--PGVEIVTFNAPCLLLP 360 Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 L + ++ + + KL ++ Sbjct: 361 LLSYKQGKFFTSCVSDVRLMTWMLEPSADTAEFADYDKLLQSYQQQIGLPAGLNAAECKG 420 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 ++ + E Y + L +E+ + + + G+ V Sbjct: 421 SKEAVSHRVFYMEPLYRML-YGRLGS------HGLLPAFLKQEKRISIMCAAMKLNGFYV 473 Query: 200 DVALAHTLNQIVDVERTKLDQELE-SLTYGLVSSSRCLEKLKTWLFLETGLHL------- 251 ++ + KL E + + + + + L+ L Sbjct: 474 NLVEVDGFKARCAEKMEKLRSEARSMIPSMTNFNIQSADDCRVALYEVLKLGPNLVSKGT 533 Query: 252 -----------EDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 + +T + L + ++ + ++ + +E Sbjct: 534 EGSTENNSLILTRGGKLSTSEETLRILA-RHHEFPRILIAYRKLAKLLQTYVVGFMEMAI 592 Query: 300 S----DG---------------------------RLRGTLQFLGASRTGRWSGCVFPPQN 328 DG +L L G + TGR + Q Sbjct: 593 PIEEGDGEFTDFSITEQGKEAIPNASDRHKAKWAKLHPNLVQEG-TETGRLTSVEPNMQA 651 Query: 329 LPR-------------------PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 LPR + SD + +R C+ Sbjct: 652 LPRSTQLVATHEKNNTNDADSENGNYENINGDVNAADAGGNESDGPVQEKEVSFIRRCLG 711 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 A +G LV D +E RVLA ++G+ + D++ + F VT ++R Sbjct: 712 APDGYSLVSLDYEQVELRVLAHLSGDSALINVLTKSGDIHRSIAEIIFRKTS--VTGEER 769 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 ++ K + + Y G Sbjct: 770 SLAKKVVFGILYGAGP-------------------------------------------- 785 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 A + RV ++ V + Sbjct: 786 RGLAQQMGVSVEQALRVSSLFKSCFPTVDAYQRRIIDQCRS------------------- 826 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + + SGR D+ + T R+ +VQ + D+ Sbjct: 827 -------DGSVRTLSGRVRSIPDINDRVL---TKRSHAERQA------FNTVVQGSAADV 870 Query: 610 LAEGMMNATKA-------GYDIVLTVHDEIVCETPD 638 + GM+ + ++L VHDEI+ P+ Sbjct: 871 MKLGMIAVEREVLQPHAPDVRLLLQVHDEIILSVPN 906 >gi|198430821|ref|XP_002124758.1| PREDICTED: similar to DNA polymerase theta [Ciona intestinalis] Length = 1711 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 85/676 (12%), Positives = 186/676 (27%), Gaps = 130/676 (19%) Query: 26 EDVCVILFAFGFDDHPVELWDC----VHDPVMPQVLKEALE--NTDVTIVAHNSYFERTV 79 +D ++ + + V D P + + ++ E + DV +A + Sbjct: 1127 KDPKLVGLSLCWSPTVVYYLDIQILKTRHPSVIEDIQNIFESFDEDVIQIAFCIKDQFKW 1186 Query: 80 LKACFNLDIPI-HRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCK 135 + + + W ++ + L ++ E + + + + Sbjct: 1187 MLNSGVHGVTTSNNWQDPMIASWLMDPDNIKQGLFSLVEHYCSEHLYLFQDTKYDWDVNR 1246 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ------ELWYLD 189 ++ Y + ++ ++L ++ + Y Sbjct: 1247 PSYTSVSSEKVCC-----VESIASY-----ILMLQLEEQLSGMNMWQHFTGVEMPHMYCV 1296 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G VD +L + L ++ + + +++ LF E L Sbjct: 1297 ALLELNGIEVDNSLLKRYRLELHSASLALQEKAWKILGRK-FNLSNPKEVSKVLFQELRL 1355 Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFNNR---MRASRSAVLKLNTLVEAMNSDGRLRG 306 + + R ++ +L +N+L + GRL Sbjct: 1356 XXX------XXXXXXXXXXXXXXYPCIMSWRTVNYALNKV-ILLINSLPPSC---GRLHH 1405 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 L + TGR Q++P+ + S + S C+R+ Sbjct: 1406 KC--LTLTNTGRMIMSEPNIQSIPK-------------QFSITKGSKSEADSEQSFCLRN 1450 Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA---PAQ 423 +A GK L+ AD + IE R+LA ++G++ + AF + + A F Sbjct: 1451 IFVAGNGKLLISADYSQIELRILAHLSGDETLIAAFNSSGVDIFKSIAAMFYSEISSIDD 1510 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT QR K + Y GA+ + +N + +S + + + Sbjct: 1511 VTDKQRDTTKQTCYGILYGMGAQTLAQ-----QMNTSETDAQNAMDSFMNSYPMVKVYFN 1565 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS----ELWNELHQAFEQTIENGKAII 539 + E + G R+ + ++ + + + G A Sbjct: 1566 RLVAQCKEKGYIETISGR---------RRYLPEIKSVRLKMRSHAERQAVNSTIQGSAAD 1616 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 K + L + NTT Sbjct: 1617 IVKMATYKIHCAVASLGWNTLH--------------QNTRSNTT---------------- 1646 Query: 600 NIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSNPSWA 658 + +V +HDE++ E + S++ M Sbjct: 1647 ---------------------DFFLVHHIHDELIYEVDEKKLHEAVSVIERCMVDAFP-- 1683 Query: 659 KGLPLKAEGYESKRYR 674 + L K + Sbjct: 1684 MSVKLAVRIKVGKLWG 1699 >gi|198451642|ref|XP_001358456.2| GA19301 [Drosophila pseudoobscura pseudoobscura] gi|198131580|gb|EAL27595.2| GA19301 [Drosophila pseudoobscura pseudoobscura] Length = 2054 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 99/663 (14%), Positives = 196/663 (29%), Gaps = 126/663 (19%) Query: 30 VILFAFGFDDHPVELWDC--VHDPVMPQVLK-----EALENTDVTIVAHNSYFERTVLKA 82 + +F D+ V +P LK + ++ ++T++ H++ + L Sbjct: 1493 IAGLSFCLADNVVYYMCMQEEEGQQVPTRLKVQELCKLMDRPELTLLVHDAKEQLKALLH 1552 Query: 83 ----CFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIARFCKG 136 N+ I R V + K + Q E L G Sbjct: 1553 GVPQLHNIGI---RVEDPKVGNWLLEPEKTFSFKNMC------QQFAPECTALANLCGSG 1603 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK---EQELWYLDQTIN 193 + + R E C VT I K + E + + + Sbjct: 1604 RGYSSHGLDSSSAILPKLRASIEAC-----VTVHILKGQIENLERIEVEMPIQIVLCRME 1658 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G+ L + + K++ ++ + + + + L L Sbjct: 1659 CVGFPAKHQRMGRLIKHMLDTLNKVEIKIYKMHGSK-FNLGSTQAVANVLGLHRK---PH 1714 Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T ++VL P + + N+R + + V + L+ R+ G A Sbjct: 1715 GRVSTSRQVLEKLGS--PISELILNHR-KLNMQIVKGMQPLIR-CCKANRIHGHSITHTA 1770 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SE 372 + GR S QN+ ++ + S RS + E Sbjct: 1771 T--GRISMSEPNLQNV----AKDFDIRMGPDSVRISC--------------RSVFKSMDE 1810 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 + L+ AD +E R+LA ++ ++ + + +DL+ A ++ A+VT+ R+ Sbjct: 1811 KRCLLSADFCQLEMRILAHLSQDKALVSVMNSPQDLFTAIAAHWNHIPEAEVTEQMRSGT 1870 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y G ++ L + + + + + + + Sbjct: 1871 KQICYGIVYGMGMRSLGD-----ALQCTESEAQLICEQFHQSYPGIRAYTEKVLKFARKL 1925 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + G R +S L + + T G A KR Sbjct: 1926 GYVETITGR--RRYLD---HINSGEQNLIKQAERQAVNTTIQGSAADIAKR--------- 1971 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 L + GR ++ +G EN +Q Sbjct: 1972 ---AILDMDKNIGR--YWKKLGVE----------------------ENSIQ--------- 1995 Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESK 671 +VL +HDE+V E P+ + L M S +PLK + + Sbjct: 1996 -----------LVLHIHDELVYEVPEAKAKRIAKFLGLTMESIGKGKLTVPLKVKIKMGE 2044 Query: 672 RYR 674 + Sbjct: 2045 SWG 2047 >gi|15487835|gb|AAL00966.1|AF401678_1 DNA polymerase I [Lactobacillus sakei] Length = 343 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 46/357 (12%), Positives = 105/357 (29%), Gaps = 41/357 (11%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85 +I F G DH W D + LK+ LE+ V Sbjct: 22 ADLIGFYIGAPDH----WYVSDDVALLAEPVLKDWLEDASHPKAVFGVKR-TQVAANRLG 76 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 + + L+ + + +G L + + E + + Sbjct: 77 VHLAGVD-FDLLLASYLLNTTNNSNDLGTVANLHEYQNVQTDEAV-YGKGAKRAVPTEPA 134 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 H + + + + ++ + + E L + + G VD + Sbjct: 135 LLYQHLVQKAAAIYHLQPQLEEQLKEHQQFDLFTDMELPLALVLAQMEITGIRVDASRLQ 194 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262 + L++++ + + ++L LF + GL + T+ +T V Sbjct: 195 QMGSEFSQTLKILEEKVYAEAG-ETFNINSPKQLGVILFEKMGLPVVKKTKTGYSTAVDV 253 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L +K P + + R ++ + L+++++ D ++ ++TGR S Sbjct: 254 LEQLRKDAPIVQTILDYRQ-IAKIQSTYVEGLLKSIHQDNKVHTRYLQ-TLTQTGRLSSV 311 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVV 378 QN+P + +R + S ++ Sbjct: 312 DPNLQNIPVRLAEGRK-------------------------IRQAFVPSHPDWQMFA 343 >gi|167392000|ref|XP_001739984.1| DNA polymerase I [Entamoeba dispar SAW760] gi|165896117|gb|EDR23624.1| DNA polymerase I, putative [Entamoeba dispar SAW760] Length = 651 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 94/638 (14%), Positives = 182/638 (28%), Gaps = 148/638 (23%) Query: 55 QVLKEALENTDVTIVAHNS-----YF--ERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107 + L + + N+ I+ HN + + + FN + +R T + A + S Sbjct: 136 KDLLKEIINSKRLIIVHNLIEEIKNYRNDIKCVLENFNTN---NRIFDTYIGASTIDPGS 192 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 +G+ E NK E + + +V + Sbjct: 193 ----------------VDGQTFNQICLVYEVII-----NKSTTEERLKQTRKLALKEVEI 231 Query: 168 TREIFKRLEPLSSKEQELWYLDQTIND-RGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + + ++ +E + + +N + +D L + +++ E+ K++ E + + Sbjct: 232 MNK-YNMIKVFQEQEMIIEGVLIEMNYCNEFKIDDKLLNEQRKVLIEEQNKIEIETKKII 290 Query: 227 YGLVSSSRCLEKLKTWLFLET-GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + + E++K L G+ TT +++LS P A V R + S+ Sbjct: 291 GKTI-NLSSPEQVKKELIRYNIGIDGVKKKATTDKKILSQ--SGHPFAKLVLEYR-KISK 346 Query: 286 SAVLKLNTLVEAMNSDG--RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + G T A TGR Q +P+ Sbjct: 347 LLSGVIEQIRRCCIKTGDEYFIRTKWSQTAITTGRIQSKNPNLQQIPK------------ 394 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 LQ R I V D IE R+LA + ++ F+ Sbjct: 395 ---------QAFSLQQFVVIPRDLFITHNNNTFVAIDYNQIELRILANFTKDHHLIEFFK 445 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 + D++ A +T +R K + G+ + A Sbjct: 446 SNIDIHKLIAAHWLKKNVNDITDGERRKAKTIVYGCI--------------YGIGPFSLA 491 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + +++ + + E Sbjct: 492 DQLHI------------------------------SLDESKTFLESFLDQFPSFKKWKEE 521 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T I +RR + + DK L Sbjct: 522 IITNASTT--GFVHTINNRRRRINNLTDSSDKKTL------------------------- 554 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP 637 + R + +Q + DI+ M+ K G ++L +HDEIV E P Sbjct: 555 -AESKRIA------VNSPIQGTAADIIKMCMIEIFKKIHSTWLGVQLLLNIHDEIVLEVP 607 Query: 638 DTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 D L +LM +PL K++ Sbjct: 608 DHLLDEVCVTLKYLMEHIVQ--LEVPLVVTVETGKKWG 643 >gi|72388042|ref|XP_844445.1| mitochondrial DNA polymerase I protein A [Trypanosoma brucei TREU927] gi|62359390|gb|AAX79828.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma brucei] gi|70800978|gb|AAZ10886.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 958 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 84/696 (12%), Positives = 172/696 (24%), Gaps = 170/696 (24%) Query: 20 GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV 79 G+ + V + D V ++ + + E L V IV N+ Sbjct: 304 GVNPELSHLEVSFLVVRWKD-DVIVYSAAVGLELLVRVAEEL--PGVEIVTFNAPCLLLP 360 Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 L + ++ + + KL ++ Sbjct: 361 LLSYKQGKFFTSCVSDVRLMTWMLEPSADTAEFADYDKLLQSYQQQIGLPAGLNAAECKG 420 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 ++ + E Y + L +E+ + + + G+ V Sbjct: 421 SKEAVSHRVFYMEPLYRML-YGRLGS------HGLLPAFLKQEKRISIMCAAMKLNGFYV 473 Query: 200 DVALAHTLNQIVDVERTKLDQELE-SLTYGLVSSSRCLEKLKTWLFLETGLHL------- 251 ++ + KL E + + + + + L+ L Sbjct: 474 NLVEVDGFKARCAEKMEKLRSEARSMIPSMTNFNIQSADDCRVALYEVLKLGPNLVSKGT 533 Query: 252 -----------EDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 + +T + L + ++ + ++ + +E Sbjct: 534 EGSTENNSLILTRGGKLSTSEETLRILA-RHHEFPRILIAYRKLAKLLQTYVVGFMEMAI 592 Query: 300 S----DG---------------------------RLRGTLQFLGASRTGRWSGCVFPPQN 328 DG +L L G + TGR + Q Sbjct: 593 PIEEGDGEFTDFSISEQGKEAIPNASDRHKAKWAKLHPNLVQEG-TETGRLTSVEPNMQA 651 Query: 329 LPRPS-------------------RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 LPR + + + SD + +R C+ Sbjct: 652 LPRSTQLVATHEKNNTNDADSENGNNENINGDVNAADAGGNESDGPVQEKEVSFIRRCLG 711 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 A +G LV D +E RVLA ++G+ + D++ + F VT ++R Sbjct: 712 APDGYSLVSLDYEQVELRVLAHLSGDSALINVLTKSGDIHRSIAEIIFRKTS--VTGEER 769 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 ++ K + + Y G Sbjct: 770 SLAKKVVFGILYGAGP-------------------------------------------- 785 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 A + RV ++ V + Sbjct: 786 RGLAQQMGVSVEQALRVSSLFKSCFPTVDAYQRRIIDQCRS------------------- 826 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + + SGR D+ + T R+ +VQ + D+ Sbjct: 827 -------DGSVRTLSGRVRSIPDINDRVL---TKRSHAERQA------FNTVVQGSAADV 870 Query: 610 LAEGMMNATKA-------GYDIVLTVHDEIVCETPD 638 + GM+ + ++L VHDEI+ P+ Sbjct: 871 MKLGMIAVEREVLQPHAPDVRLLLQVHDEIILSVPN 906 >gi|316973920|gb|EFV57463.1| DNA polymerase I domain protein [Trichinella spiralis] Length = 1661 Score = 158 bits (399), Expect = 3e-36, Method: Composition-based stats. Identities = 95/709 (13%), Positives = 197/709 (27%), Gaps = 156/709 (22%) Query: 5 FIDFE--TRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELW-------------D 46 +D E T L I Y A +D V + Sbjct: 1045 ALDIENCTACHSKLHSRKSTKISNYT-------VAVCWDLQNVYVLTGEFKIVSEFVGDG 1097 Query: 47 CVHDPVM-PQVLKEALE--NTDVTIVAHNSYFERTV------LKACFNLDIPIHRWICTL 97 C ++LK L ++ +V +N R V L + + T Sbjct: 1098 CEAGEKDKVKLLKMILTPNDSSKVVVFYNL---RKVIPLLFELYKNEAFEFQNRLCLTT- 1153 Query: 98 VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 + + V +AL L+ + L + + ++ + Sbjct: 1154 -ASWILNPDGSYWDV-KAL-LTEYSPHDLNILQSSWNNDSSNSSTSCFQSAATNVLYPKI 1210 Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 E + + E Y+ I G +V L ++ + + + Sbjct: 1211 FEI--------LKKKNLWNAFLNIELPAQYVVGNIESAGIGFNVDLCMAMSTCLKNKLNE 1262 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED------------LTETTCQRVLSS 265 L+ E S +++ LF E L D +T + VL + Sbjct: 1263 LEAEAAKEAGHR-FSLNSPKEVSKVLFYELQLPPPDESKVSRRRFTSVKQYSTAKHVLEN 1321 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVE---AMNSDGRLRGTLQ------FLGASRT 316 +L P + R S + + L+ + ++ + Q + + T Sbjct: 1322 LAQLHPLPGIILEFRQ-LSAALTNYIYPLLRINRYLCTNCNCVFSTQERIIGKYDWYTAT 1380 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR Q +P+ P + +R +ASEG L Sbjct: 1381 GRLIMHEPNLQIVPK--------------------FLEIPNGNNTLHIREIFVASEGCTL 1420 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + +E R+LA ++ + +K + D++ A+ ++ + V + QR K + Sbjct: 1421 LSADFSQLELRILAHLSNDSKLIKILKEKIDVFTEIAAKMNSIDRSAVNEIQRNRAKQIC 1480 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 AL Y K+ L + + N+ + + D + E Sbjct: 1481 YALIYGMCPKSLAAE-----LGTDEEQAIQFYNNFKKLFPDVTRWLIETTEKCRSRGFCV 1535 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + + + R ++ + Sbjct: 1536 TLANR----------------VRYFAAIRSSA-------TSDKLHAERQAINTTVQGSAS 1572 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 ++ + L D +N Q ++ Sbjct: 1573 DIFKIALRKVYLALDDYTKKNGQMNNA-------------------QTLA---------- 1603 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 I+ +HDE++ E +++ + + M + S LP++ Sbjct: 1604 ------KIIFQIHDELMLEVTNSNVEAVATIVKHSMETAVSLRVDLPVR 1646 >gi|126015340|gb|ABN70701.1| DNA polymerase 1 [Salmonella phage SETP7] gi|126015342|gb|ABN70702.1| DNA polymerase 1 [Salmonella phage SETP11] Length = 267 Score = 157 bits (397), Expect = 5e-36, Method: Composition-based stats. Identities = 81/262 (30%), Positives = 114/262 (43%), Gaps = 34/262 (12%) Query: 448 FQKMASTTGLNLNTFAHLVKTNSAP-EEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 + A T ++A+ R +++ I D + C+ + Sbjct: 6 LIEXAKTMAGTFPDHIWAATARGYEWARIQEAKRPPRPGEKDDRPSYILDKKVWRTCDAI 65 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENG---------------KAIIARKRRDVPLVYM 551 K+ WR+ H + W +L + N +AI + ++ Sbjct: 66 KRMWRESHPQTVAFWRDLKDGILAAVRNPGRDFWAGANIRSNGERAIRIWRTTEIDSSGR 125 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRS------------------YLNTTTRQLTREYTY 593 L + LPSGR L Y +G + + N TRQ T YT+ Sbjct: 126 NIPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRVNTNVRIKYQGENQLTRQWTTLYTH 185 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTS 653 GGK ENIVQA RD+LA M+NA GY IVL+VHDE+VCETPDT ++ + L LM + Sbjct: 186 GGKACENIVQAFCRDLLAYAMLNAEAGGYPIVLSVHDELVCETPDTPDYTVAELEKLMCA 245 Query: 654 NPSWAKGLPLKAEGYESKRYRK 675 P WA+G PL AEG E KRY K Sbjct: 246 LPEWAEGFPLVAEGAELKRYAK 267 >gi|21929659|gb|AAM81962.1|AF445376_1 DNA polymerase I-like protein A [Trypanosoma brucei] Length = 958 Score = 157 bits (397), Expect = 6e-36, Method: Composition-based stats. Identities = 83/696 (11%), Positives = 171/696 (24%), Gaps = 170/696 (24%) Query: 20 GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV 79 G+ + V + D V ++ + + E L V IV N+ Sbjct: 304 GVNPELSHLEVSFLVVRWKD-DVIVYSAAVGLELLVRVAEEL--PGVEIVTFNAPCLLLP 360 Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 L + ++ + + KL ++ Sbjct: 361 LLSYKQGKFFTSCVSDVRLMTWMLEPSADTAEFADYDKLLQSYQQQIGLPAGLNAAECKG 420 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 ++ + E Y + L +E+ + + + G+ V Sbjct: 421 SKEAVSHRVFYMEPLYRML-YGRLGS------HGLLPAFLKQEKRISIMCAAMKLNGFYV 473 Query: 200 DVALAHTLNQIVDVERTKLDQELE-SLTYGLVSSSRCLEKLKTWLFLETGLHL------- 251 ++ + KL E + + + + + L+ L Sbjct: 474 NLVEVDGFKARCAEKMEKLRSEARSMIPSMTNFNIQSADDCRVALYEVLKLGPNLVSKGT 533 Query: 252 -----------EDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 + +T + L + ++ + ++ + +E Sbjct: 534 EGSTENNSLILTRGGKLSTSEETLRILA-RHHEFPRILIAYRKLAKLLQTYVVGFMEMAI 592 Query: 300 S----DG---------------------------RLRGTLQFLGASRTGRWSGCVFPPQN 328 DG +L L G + TGR + Q Sbjct: 593 PIEEGDGEFTDFSISEQGKEAIPNASDRHKAKWAKLHPNLVQEG-TETGRLTSVEPNMQA 651 Query: 329 LPRPS-------------------RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 LPR + + + SD + +R C+ Sbjct: 652 LPRSTQLVATHEKNNTNDADSENGNNENINGDVNAADAGGNESDGPVQEKEVSFIRRCLG 711 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 +G LV D +E RVLA ++G+ + D++ + F VT ++R Sbjct: 712 VPDGYSLVSLDYEQVELRVLAHLSGDSALISVLTKSGDIHRSIAEIIFRKTS--VTGEER 769 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 ++ K + + Y G Sbjct: 770 SLAKKVVFGILYGAGP-------------------------------------------- 785 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 A + RV ++ V + Sbjct: 786 RGLAQQMGVSVEQALRVSSLFKSCFPTVDAYQRRIIDQCRS------------------- 826 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + + SGR D+ + T R+ +VQ + D+ Sbjct: 827 -------DGSVRTLSGRVRSIPDINDRVL---TKRSHAERQA------FNTVVQGSAADV 870 Query: 610 LAEGMMNATKA-------GYDIVLTVHDEIVCETPD 638 + GM+ + ++L VHDEI+ P+ Sbjct: 871 MKLGMIAVEREVLQPHAPDVRLLLQVHDEIILSVPN 906 >gi|71898989|ref|ZP_00681155.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1] gi|71731235|gb|EAO33300.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1] Length = 199 Score = 157 bits (396), Expect = 6e-36, Method: Composition-based stats. Identities = 83/200 (41%), Positives = 104/200 (52%), Gaps = 11/200 (5%) Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 +W + N AC+ K+AWR H ++ W L A I + + Sbjct: 4 LQWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA--- 60 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGG 595 + ++ + L L LPSGR L Y D SY+ T TR+ TR TYGG Sbjct: 61 --HTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGG 118 Query: 596 KLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNP 655 KL ENI QAVSRD+LA M AGY IVLTVHDEI+ E D FNA+ L LM + P Sbjct: 119 KLVENITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPP 178 Query: 656 SWAKGLPLKAEGYESKRYRK 675 WA+GLPL AEG+E+ RYRK Sbjct: 179 PWAQGLPLAAEGFETHRYRK 198 >gi|255551068|ref|XP_002516582.1| DNA polymerase theta, putative [Ricinus communis] gi|223544402|gb|EEF45923.1| DNA polymerase theta, putative [Ricinus communis] Length = 2154 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 96/718 (13%), Positives = 184/718 (25%), Gaps = 192/718 (26%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV----LKE--ALE-----NTDVTIVA------- 70 + A +++ P+ + D + P L+ LE + + Sbjct: 1506 EIHGMAICWENSPIYYVNLPKDLLCPDNQKYVLRPENWLEIVRHRWNRIGKIMGKREVIK 1565 Query: 71 --HNSYFERTVLKACF------------NLDIPIHRWICTLVLARS----NGLPSALKAV 112 N + VLK D+ + I + + + + Sbjct: 1566 FTWNLKIQIQVLKNAVVSIHRFGSTNLSGKDLDLE-LIDS---SHLPLPQINVTEGIDMC 1621 Query: 113 --GEALKLSSQKME---EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L ++ KE+ R +RN + R C V Sbjct: 1622 IVAWILWPDEERSSNPNLEKEVKRRL--PTQAVAAANRNGRWKNQMRRAAHNGCCRRVAQ 1679 Query: 168 TREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 TR + L L E L + + G VD+ ++ + Sbjct: 1680 TRALCSVLWKLLISEGLVEALKKIEMPLVNVLADMELWGIGVDMEACLRARNVLGKKLRH 1739 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE------DLTETTCQRVLSSNKKLTP 271 L+++ L S + L+ L + L +T + L +K Sbjct: 1740 LEKKAYELAGMT-FSLYTAADIANVLYGRLKLPIPEGHGKGKLHPSTDKHCLDLLRKKYC 1798 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 +F + A + V + L R Sbjct: 1799 CFAFMFYATIAAL---------------------KLGLLMLFFLILMILIWVSEIKVLLR 1837 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCV--RSCVIA-SEGKKLVVADLAGIEARV 388 + + + + S+ + + + + R I E L+ AD + IE R+ Sbjct: 1838 TNLGVMQCVEHMVEFKISMDKNGGDAEANNYKINAREFFIPTQENWLLLTADYSQIELRL 1897 Query: 389 LAWMAGEQWKLKA-FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +A + + ++ + D++ AR A V +R K + + Sbjct: 1898 MAHFSKDASLIELLSKPHGDVFTIIAARWTGKAEESVASLERDQTKRLVYGIL------- 1950 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 A + Sbjct: 1951 -------------------------------------YGMGANTLAQQLECSSDEAAEKI 1973 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 K+++ V+ LH+A +NG + GR Sbjct: 1974 KSFKSCFPGVASW---LHEAVASCRKNGYVETLK-----------------------GRK 2007 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT--------- 618 + S + + R+ +I Q + D++ M+N Sbjct: 2008 RFLSKIKFGNSKEKS---KAQRQA------VNSICQGSAADLIKIAMINIYSVIARVDGP 2058 Query: 619 -------------KAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLP 662 K I+L VHDE+V E P + AS+L M + S +P Sbjct: 2059 DPSSSLATKFHMLKGRCRILLQVHDELVLEVDPPVIKEAASLLQAGMENAASL-LDMP 2115 >gi|308808137|ref|XP_003081379.1| helicase and polymerase containing protein TEBICHI (ISS) [Ostreococcus tauri] gi|116059841|emb|CAL55548.1| helicase and polymerase containing protein TEBICHI (ISS) [Ostreococcus tauri] Length = 1489 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 70/643 (10%), Positives = 145/643 (22%), Gaps = 164/643 (25%) Query: 92 RWICTLVLARSNGLPS------ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 + + A + + + + + L++ F Sbjct: 916 PCVDVRIAAWLLRPSAPEVQSSSRDDL--VHGMDP-----TEPLMSLFSAELDSAKSGVD 968 Query: 146 NK----------PNHREAWRLFGEYC---KGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192 H + C + E + L E + Sbjct: 969 TACLLLERKGRSYEHLKPLSRAVASCFLMGRFLWEECEAKDLIRALIRVEMPFVAPIVAM 1028 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC-------LEKLKTWLFL 245 D +D KL++ + + L L+ Sbjct: 1029 ETVKVPFDPRRLKEEIAAMDDRLKKLEEYAKKQKWLDPLHPANLRRAFTDNAYLVKCLYE 1088 Query: 246 ETGLHLEDL-------------------TETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 L T+TT ++V + + P + +R R Sbjct: 1089 HLKLTPPAGSELAFTKDWVSNAKECTVSTKTTYEKVHEQSGHMFPLL--ILEHRSVFKRL 1146 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRT-GRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + L+ R + GR + ++ Sbjct: 1147 --TFADVLLGMYGESMDSRIRYSIHQTNHDCGRLTHIEPNFHSM---------------A 1189 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK------L 399 D L VRS + + D + +E RV+A +G+Q Sbjct: 1190 HDMKCVDAFDGLDAPVISVRSAFTPPADRVFLRVDYSHLELRVMAHFSGDQTLIALLQNP 1249 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 + +D + + V V+ D+R K + + Y G K Sbjct: 1250 EPVNAHDDPFTMLACKWRGVPLNAVSVDERQRVKNLVYGILYGSGVKRL----------- 1298 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A E + + + + Sbjct: 1299 ---------------------------------ARELRLSDEKAKILVDELKSMLPTLMN 1325 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 +++ + +K + S R + ++ + Sbjct: 1326 WRDDVVARAIE-----------------------EKPIPRVTTISSRHRYFPELLSRSGD 1362 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--------AGYDIVLTVHDE 631 + R+ + Q + DI ++ + +VLTVHDE Sbjct: 1363 ERSA---AERQA------VNTVCQGSAADIFKTAVVLVMETLRAKHLLDRCQLVLTVHDE 1413 Query: 632 IVCETPDTDEFNASMLYH-LMTS-NPSWAKGLPLKAEGYESKR 672 V E + A+ + M S + +PL + Sbjct: 1414 AVFEVNASVAKAAARIVRNTMESVAGVFNLSVPLPVKAQIGPS 1456 >gi|294810417|ref|ZP_06769074.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294442382|gb|EFG11192.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 614 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 30/236 (12%), Positives = 62/236 (26%), Gaps = 39/236 (16%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 L +D ET + D ++ +F ++ D + + Sbjct: 377 KILSLDTETTETEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 + EN + V N ++ VL+ + T++ + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNYGAVV--KGPLFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + ELI K + Y D +T ++ L Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDVYLYACEDADITLKLKNVL 533 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 E E L + I G +D + + ++++E Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKE 589 >gi|145350924|ref|XP_001419843.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580075|gb|ABO98136.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 460 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 66/512 (12%), Positives = 133/512 (25%), Gaps = 121/512 (23%) Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 E + D +D KL++ + + ++ SS + + Sbjct: 1 MEIEMPFVAPIVAMQTVRIPFDARKMREEMATMDDRLKKLEEYALTQKWIVLDSSVSIAR 60 Query: 239 L--------KTWLFLETGLHLEDLTETT-CQRVLSSNKKL--TPQAIQVFNNRMRASRSA 287 + L+ L +T+ L + P + + +R Sbjct: 61 RALTNNTYLQDRLYKHLKLTPPPGAKTSIDANNLRKLYEQSNHPFPLLIIEHRSVFK--R 118 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 +T++ D R+R ++ GR + +L Sbjct: 119 RGFADTILGMYADDSRIRYSIFQTNH-DCGRLAHSEPNFHSL---------------AHD 162 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + L +RS + K V AD + +E R++A +G++ + + E Sbjct: 163 MTCGDQFYGLDAPKISIRSAFVPPAAKVFVRADYSQLELRIMAHFSGDRTLIHMLQNPEP 222 Query: 408 ------LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 + ++ + AP V ++R K + L Y GAK Sbjct: 223 NNLKDDPFTMLASKWYRKAPDTVLAEERTNCKNLVYGLLYGSGAKKLAS----------- 271 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + A + ++ R+ E Sbjct: 272 ---------------------------------DLRMCEEAAKSEVARFKSMLPRLMEWL 298 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + + + S R + D+ + N Sbjct: 299 DGIVIRAREEKPIARVTTI-----------------------SARHRYFPDLHSKN---N 332 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--------AGYDIVLTVHDEIV 633 R+ + Q + DI ++ +VLTVHDE V Sbjct: 333 DDRAAAERQA------VNTVCQGSAADIFKTAVVRVIDTLRTKYLIERCQLVLTVHDECV 386 Query: 634 CETPDTDEFNASMLYH-LMTS-NPSWAKGLPL 663 E + + M S + +PL Sbjct: 387 FECDARSAKAIAQIVRHAMESVANEFNLAVPL 418 >gi|195113811|ref|XP_002001461.1| GI21961 [Drosophila mojavensis] gi|193918055|gb|EDW16922.1| GI21961 [Drosophila mojavensis] Length = 2181 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 92/678 (13%), Positives = 191/678 (28%), Gaps = 135/678 (19%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHD------------PVMPQVLKEALENTDVTIVAHNS 73 + + AF +D+ V + + + Q L L D+T+++H++ Sbjct: 1603 DSSYLAGIAFCLNDNVVYYMNMQPEEEQQQQQQQVGSELKVQQLSSLLSRQDLTLLSHDA 1662 Query: 74 YFERTVLKACFN--LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA 131 + VL+ DI + V L + Q E L Sbjct: 1663 KEQLKVLRQAVPQLNDIQVL-LEDPKVANWLLQPDKTL----SFHNMCQQFAPECGALAN 1717 Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK---------- 181 G + R E C VT I + Sbjct: 1718 LCGSGRGYSSFGLDASSAIMAKVRASIEAC-----VTVHILNGQLENLERIGTGQLLKFF 1772 Query: 182 ---EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 E + + G+ L Q + +L+ ++ L + + Sbjct: 1773 RELEMPIQMSLCHMECIGFPAKEHSLQRLFQQMMATMKRLESKIYELHGSR-FNLGSTQA 1831 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 + L L + +T +++L +P + + N R + S + L++ Sbjct: 1832 VAKVLGLHRKA---NGRVSTSRQILEKI--DSPISQLILNYR-KLSMLLAKSMQPLLKCC 1885 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 ++ R Q + + TGR S QN+ + + Sbjct: 1886 QAN---RVHGQSITYTATGRISMSEPNLQNVAK------------------DFHIELGKE 1924 Query: 359 IISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 + RS E + L+ AD +E R+LA ++ ++ L+ + +DL+ A Sbjct: 1925 QLKISCRSAFAPMDEKRCLISADFCQLEMRILAHLSQDKALLQVMNSTQDLFTAIAAHWN 1984 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 + + V++ R K + + Y G ++ + L + T + Sbjct: 1985 KIDESNVSEQLRNGTKQICYGIVYGMGMRSLSE-----ALKCTEQEAQMITEQFHLAYPG 2039 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 + + + + + + G R +S +L + + + G A Sbjct: 2040 IKAYTMKVVKFARNNGYVETITGR--RRYLD---HINSGEVQLKTQAERQAINSTIQGSA 2094 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 K L + GR Sbjct: 2095 ADIAK------------SAILRMEKNLGRYREK--------------------------- 2115 Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPS 656 + K ++VL +HDE++ E P + + L M + Sbjct: 2116 -----------------LGLAKNAVNLVLHLHDELIFEVPTDKAKKVAKVLSLTMENCVK 2158 Query: 657 WAKGLPLKAEGYESKRYR 674 +PL+ + + + Sbjct: 2159 --LNVPLRVKLKIGRSWG 2174 >gi|195069821|ref|XP_001997038.1| GH25245 [Drosophila grimshawi] gi|193905759|gb|EDW04626.1| GH25245 [Drosophila grimshawi] Length = 2235 Score = 156 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 70/497 (14%), Positives = 148/497 (29%), Gaps = 98/497 (19%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E + + G+ TL Q + KL+ ++ L + + + Sbjct: 1828 ELEMPIQISLCHMESIGFPAKGHRLQTLFQQMLATMKKLEAKIYELHGSR-FNLGSTQAV 1886 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 L L + +T +++L +P + + N R + S + L++ Sbjct: 1887 AKVLGLHRKA---NGRISTSRQILEKL--DSPMSQLILNYR-KLSMLLSKNMQPLLKCCQ 1940 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 ++ R Q + + TGR S QN+ E+ + S Sbjct: 1941 AN---RVHGQSITYTATGRISMSEPNLQNV----AKDFEIQLGAEKINISC--------- 1984 Query: 360 ISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 RS +GK+ L+ AD +E R+LA ++ +Q LK + +DL+ A Sbjct: 1985 -----RSAFAPMDGKRCLLSADFCQLEMRILAHLSQDQALLKVMNSPQDLFTAIAAHWNK 2039 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 + ++V++ R K + + Y G ++ + L + + + Sbjct: 2040 IPESEVSEQLRNGTKQICYGIVYGMGMRSLAE-----SLKCTEQEAQMISEQFHLAYAGI 2094 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 + + + + + + G R ++ + + + G A Sbjct: 2095 KAYAMKVVKFARNNGYVETITGR--RRYLDHINSGEPQIKN---QAERQAINSTIQGSAA 2149 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 K L + GR + N Sbjct: 2150 DIAK------------SAILRMEKNIGRYREKLGLAEN--------------------AV 2177 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSW 657 +VL +HDE++ E P + + L M + Sbjct: 2178 N------------------------LVLHLHDELIFEVPVDKAKKVAKVLSLTMENCVK- 2212 Query: 658 AKGLPLKAEGYESKRYR 674 +PL+ + + + Sbjct: 2213 -LSVPLRVKLKIGRSWG 2228 >gi|195053948|ref|XP_001993888.1| GH22128 [Drosophila grimshawi] gi|193895758|gb|EDV94624.1| GH22128 [Drosophila grimshawi] Length = 2218 Score = 156 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 70/497 (14%), Positives = 148/497 (29%), Gaps = 98/497 (19%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E + + G+ TL Q + KL+ ++ L + + + Sbjct: 1811 ELEMPIQISLCHMESIGFPAKGHRLQTLFQQMLATMKKLEAKIYELHGSR-FNLGSTQAV 1869 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 L L + +T +++L +P + + N R + S + L++ Sbjct: 1870 AKVLGLHRKA---NGRISTSRQILEKL--DSPMSQLILNYR-KLSMLLSKNMQPLLKCCQ 1923 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 ++ R Q + + TGR S QN+ E+ + S Sbjct: 1924 AN---RVHGQSITYTATGRISMSEPNLQNV----AKDFEIQLGAEKINISC--------- 1967 Query: 360 ISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 RS +GK+ L+ AD +E R+LA ++ +Q LK + +DL+ A Sbjct: 1968 -----RSAFAPMDGKRCLLSADFCQLEMRILAHLSQDQALLKVMNSPQDLFTAIAAHWNK 2022 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 + ++V++ R K + + Y G ++ + L + + + Sbjct: 2023 IPESEVSEQLRNGTKQICYGIVYGMGMRSLAE-----SLKCTEQEAQMISEQFHLAYAGI 2077 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 + + + + + + G R ++ + + + G A Sbjct: 2078 KAYAMKVVKFARNNGYVETITGR--RRYLDHINSGEPQIKN---QAERQAINSTIQGSAA 2132 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 K L + GR + N Sbjct: 2133 DIAK------------SAILRMEKNIGRYREKLGLAEN--------------------AV 2160 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSW 657 +VL +HDE++ E P + + L M + Sbjct: 2161 N------------------------LVLHLHDELIFEVPVDKAKKVAKVLSLTMENCVK- 2195 Query: 658 AKGLPLKAEGYESKRYR 674 +PL+ + + + Sbjct: 2196 -LSVPLRVKLKIGRSWG 2211 >gi|195329438|ref|XP_002031418.1| GM25985 [Drosophila sechellia] gi|194120361|gb|EDW42404.1| GM25985 [Drosophila sechellia] Length = 2006 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 97/672 (14%), Positives = 187/672 (27%), Gaps = 134/672 (19%) Query: 30 VILFAFGFDDHPVELWDCVHDPVM----------PQVLKEALENTDVTIVAHNSYFERTV 79 + +F D+ W+ D Q L + D+T+V H+ + + Sbjct: 1435 ISCVSFCLADNVAFYWNMQIDDRAACQGVPTPLKVQELCNLMARKDLTLVMHDGKEQLKM 1494 Query: 80 LKACFNLDIPIH-RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138 L+ I + V L + E L G Sbjct: 1495 LRKAIPQLQKISVKLEDAKVANWLLQP----DKTVNFLNMCQTFAPECTGLANLCGSGRG 1550 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------------SKEQEL 185 + R E C VT I K E + Sbjct: 1551 YSSYGLDTSSAILPRIRTAIESC-----VTLHILKGQIENLGRIGEGDLLKFFHDIEMPI 1605 Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 + G+ L Q + KL+ ++ + + + L Sbjct: 1606 QLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKLETKIYEQHGSR-FNLGSSQAVAKVL-- 1662 Query: 246 ETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 GLH + TT ++VL +P + + R + S + L+E +D Sbjct: 1663 --GLHRKAKGRVTTSRQVLEKL--NSPISHLILGYR-KLSCLLAKSIQPLMECCQAD--- 1714 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 R Q + + TGR S QN+ + ++ Sbjct: 1715 RIHGQSITYTATGRISMTEPNLQNVAK------------------EFCIQVGADAVNISC 1756 Query: 365 RSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 RS + E + L+ AD +E R+LA M+ ++ L+ + +DL++ A + ++ Sbjct: 1757 RSPFMPTDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIKESE 1816 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT D R K + + Y G ++ + LN + + ++ E ++ ++ R Sbjct: 1817 VTPDLRNSTKQVCYGIVYGMGMRSLAE-----SLNCSEQEARILSDQFHEAYKGIRDYTR 1871 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 + + G R+ ++ L +A Q + + Sbjct: 1872 RVVNFARGKGFVETITGR---------RRYLEMINSDMEHLKKAERQAVNS--------- 1913 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 L + R Sbjct: 1914 TIQGSAADIAKNAILKMEKNIERYRE---------------------------------- 1939 Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLP 662 D+V+ +HDE++ E P + + + M S +P Sbjct: 1940 -------KLA---LGDKSVDLVMHLHDELIFEVPTGKAKKIAKVLSITMESCVK--LSVP 1987 Query: 663 LKAEGYESKRYR 674 LK + + + Sbjct: 1988 LKVKLRIGRSWG 1999 >gi|156122486|gb|ABU50234.1| DNA polymerase [Cyanophage S-CBP3] Length = 582 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 88/688 (12%), Positives = 178/688 (25%), Gaps = 186/688 (27%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHPVELW-DCVHDPVMPQVLKEA 60 TL D ET + C + + ++ D + + + + Sbjct: 2 TLIFDIETDGLYNDVTC----------IHCIGIHDLNTKETYVFNDVGTQQPITKGI-QL 50 Query: 61 LENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA-LKL 118 LE+ D+ V HN ++ V++ + + R + TLVL+R LK + K Sbjct: 51 LEDADII-VGHNIIGYDLPVIRKLYPWFSNVGRVLDTLVLSRLYHADL-LKTDQKRNWKH 108 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 ++ L A + ++ + + + +Y DV +TR+++K + Sbjct: 109 MPVQLWGRHSLEAYGYRLGEYKGCFGKTTDWKD-WSQEMEDYMVQDVNITRKLWKDFPEI 167 Query: 179 SSK---EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES----------- 224 E + + G+ D A L + E L L + Sbjct: 168 PEWVQLEHRVAQILTEQEIHGWYFDEPAAWELESTLRRELESLKAVLRNRHPFILGEEFT 227 Query: 225 ---------------LTYGLVSSSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSN 266 T + + + L + + ++ Sbjct: 228 PKRPNSTQGYFTGATFTRLKEMNPTSRDHIAYILQKFYDWEPTERTEKGKPVVDEIV--L 285 Query: 267 KKLTPQAIQVFNNRMRASR---SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 K + + F + ++ +N ++ + +D R+ A+ T R + Sbjct: 286 KDIGSEIALQFFRCLELTKQIGMLTEGVNAWLKLVRND-RIHHHCS--VATNTHRCAHRK 342 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 +P R A+ G +V ADLAG Sbjct: 343 PNLAQVP-----------------------------AEAEFRKLFRATPGMVMVGADLAG 373 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+LA A G + A R + K + A Y Sbjct: 374 IELRMLAHYL-------AQWDGGRYGDVLLNGDIHQENADKIGISRRLVKTVTYAFLYGA 426 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G + + +L+ Sbjct: 427 GNQKI---GLSYDQSLSPDKAK-----------------------------------KKG 448 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + +++A+ + +L +A N + Sbjct: 449 QEIRQAYMDAIPGLRKLVEATKKAA---------------------------NRGYIRAI 481 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620 GR + K ++Q+ + I + +A Sbjct: 482 DGRHISVDSPH---------------------KSLNYLLQSSAGVIAKRWLALTHEAIIR 520 Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNAS 645 + +HDE+ ET + Sbjct: 521 ADIKAHQLAFIHDELQFETTPEHVEDLK 548 >gi|28199079|ref|NP_779393.1| truncated phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|28057177|gb|AAO29042.1| truncated phage-related DNA polymerase [Xylella fastidiosa Temecula1] Length = 290 Score = 154 bits (390), Expect = 3e-35, Method: Composition-based stats. Identities = 92/276 (33%), Positives = 123/276 (44%), Gaps = 21/276 (7%) Query: 416 SFNVAPAQVTKDQRAIGKVMELA--------LGYQGGAKAFQKMASTTGLNLNTF--AHL 465 + L Y+ G + +TGL L + Sbjct: 19 DHPSDRGWRHGHRTQYAGWPRLGHETSQGAVSPYRSGDDRRRYARRSTGLTLPSAVIDTP 78 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 ++P ++A +W + NH AC+ K+AWR H ++ W L Sbjct: 79 NACAASPMPIQEAVEALQWTKANHRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWQALQ 138 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLN 581 A I + + + ++ + L L LPSGR L Y D SY+ Sbjct: 139 CAVTDAIGHPETA-----HTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMG 193 Query: 582 TT--TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 T TR+ TR TYGGKL ENI QAVSRD+LA M AGY IVLTVHDEI+ E D Sbjct: 194 THPVTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIETAGYAIVLTVHDEIITEADDN 253 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 FNA+ L LM + P WA+GLPL AEG+++ RYRK Sbjct: 254 AAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 289 >gi|297180888|gb|ADI17092.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [uncultured gamma proteobacterium HF0070_03O15] Length = 454 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 83/532 (15%), Positives = 157/532 (29%), Gaps = 144/532 (27%) Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV--DVERTKLDQELES 224 ++++ P + +E + +D D + L+ + + + + + Sbjct: 38 AMAQMWRVGLPWNREELDQCRID--YEDDIKELGNEFIRELDNDLPSGKKLPRNEDGSFN 95 Query: 225 LTYGLV------------SSSRCLEKLKTWLFLETGLHLED--LTETTCQRVLSSNKKLT 270 L + + ++L L L G + + + L + + Sbjct: 96 LRAKDQGSKRLGTKKYAGFNIKSSKQLLEKLELVLGYTPVNNDGKPSVAKDALKNCAADS 155 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 P + + R R + ++ + M++DG +R + LGA TGR S Q +P Sbjct: 156 PTIQTLMTWKRREKRRQ--MIESIQDKMSNDGFVRASYMQLGA-DTGRMSSIKPNNQQIP 212 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 R S R CV A +G K+V AD + +E R+ A Sbjct: 213 RDSE-----------------------------FRQCVQAPQGWKIVDADFSQMELRLAA 243 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 +A ++ AF+ GEDL+ T + R I K L Y GA+ +K Sbjct: 244 ALAKDKNMTAAFQRGEDLHDYTAEQM---------GCDRQIAKSANFGLLYGAGAEGLRK 294 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 A ++G+ + +++ W Sbjct: 295 YAGSSGV---------------------------------------IMTNDEAVKIRDNW 315 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 +S + + E++ T +P + Sbjct: 316 LTTYSGIRDWQREMNYLSRSTE---------------------GDEWPETRVPVSNMRRF 354 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYD 623 NR+ + +Q IL + N Sbjct: 355 LKGDLNRTTVR----------------CNTPIQGAGAAILKCALGNLWDKVKETGEDKVR 398 Query: 624 IVLTVHDEIVCETPDT-DEFNASMLYHLMTSN-PSWAKGLPLKAEGYESKRY 673 I VHDE++ + + A +L M + W +P AE R+ Sbjct: 399 IAAAVHDELILLVKEDLADDWAEILKTTMENAEAKWLDDVPALAEVSIGDRW 450 >gi|291280806|ref|YP_003497640.1| hypothetical protein DEFDS_P264 [Deferribacter desulfuricans SSM1] gi|290755508|dbj|BAI81884.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 1576 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 76/685 (11%), Positives = 166/685 (24%), Gaps = 142/685 (20%) Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + E + SQ + K+L + + + Y GD T Sbjct: 829 DTLNEKVGYKSQMVHLFKDLFDLVS--TKNNIVKIDEFDYSYINFDEQSFYAAGDTYATY 886 Query: 170 E---------IFKRLEPLSSKEQELWYLDQTINDR-------GYCVDVALAHTLNQIVDV 213 E + + + + + L I G ++ + Sbjct: 887 EAFKLDYMNFLKRDSKSILKEYPIPLVLLNDILLPISVIQSQGIKIEPDDYEFMKINFKR 946 Query: 214 ERTKLDQELESLTY------------GLVSSSRCLEKLKTWLFLETGLHLE--------- 252 +L + + + + + E L + + + Sbjct: 947 SLEELLKNIYNHPDLKPYIEEFEAKYKEKFNIQSAEHLTHMFYDYLQVPDKYKTFTDKGN 1006 Query: 253 --------DLTETTCQRVLSSNKKLTPQAIQVFNN----RMRASRSAVLKLNTL-VEAMN 299 + S K + + S+ + + + Sbjct: 1007 IQMNESAIKKIKGIDIEDESIQDKKKVEIAKYLAEKTLEYRTFSKLYSAYIQSYNKNDLI 1066 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 + F + TGR S QN+P+ E + I ++ Sbjct: 1067 DTNYIVHPNYFTTGTVTGRMSSSEPNFQNIPKGDLPKEFQVKNIFVSRYLNSNKYFEDND 1126 Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 + L+ AD + +E RVLA ++ ++ AF +GED+++ T + Sbjct: 1127 YKKPITG--------ILLQADYSQMELRVLAMVSQDENLKNAFISGEDIHLATAKSITGM 1178 Query: 420 AP--AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 V ++ +V L Y+ + + + + + + Sbjct: 1179 DYLSKDVDENTEITPEVKNLITKYKQYWGKEAENLT----DKEILSKIAHDTEVIRKKAK 1234 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 NF A E+ + + V ++ + Sbjct: 1235 TVNFGIVYGMTAAGLAERINVSLKEAEKFIEQYLNALPGVQNYIITKQTKAKE--KGYVE 1292 Query: 538 IIARKRRD----------VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 I ++R+ + + P L Y ++ + + Sbjct: 1293 TIWNRKRNLLNAKVYLHDIEQIIKHYKDKLYSKNTPEEDKLFYNNIIYGLKQMYYVGTKS 1352 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAG--------------------YDIVL- 626 R+ +Q + D ++ A VL Sbjct: 1353 LRQSINAP------IQGGASDFTFVSLICLNHAFLTLKELNIPVYNKETNQIEYIRPVLI 1406 Query: 627 -TVHDEIVCETPDTDE-----FNASMLYHLMTSNP------------SWAKG-------- 660 TVHD IV + P + ++ +M A Sbjct: 1407 GTVHDSIVIDIPVHTKHYIVHKVIKLVKTIMEDPLNYFINIFLPDVYKVAPDVNLTELKK 1466 Query: 661 -----------LPLKAEGYESKRYR 674 +PLK++ R+ Sbjct: 1467 ELNSIRDLYLQVPLKSDVEVGYRWG 1491 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 24/199 (12%), Positives = 54/199 (27%), Gaps = 47/199 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDH----PVELWDCVHDP------- 51 + +D ET G + +F+ D + H Sbjct: 482 VALDIETNGL-----KGYSTDKHKNTITMFSITKVDPKTKQLKTYVIGYEHKDIMNQMDE 536 Query: 52 --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLA 100 + +++ L + ++ + HN F+ + + N+ +I + R+ T+ + Sbjct: 537 KSFKLYKNNVRKLILNYLNSENIIKIFHNGTFDVSYIMNKLNISPNEIKVTRYFDTINIL 596 Query: 101 RS-----NGLPSALKAVG-------EALKLSSQ-------KMEEGKELIARFCKGETHEC 141 L + K+ E LI +F K + E Sbjct: 597 YLRMEEKLKGWQKLDNLAMLRSKLRTYYFYMHDYVDTLKNKLSELNSLINKFRKYDLTES 656 Query: 142 LYDRNKPNHREAWRLFGEY 160 ++ + Y Sbjct: 657 QISCFLNINKTLINYYYIY 675 >gi|307580241|gb|ADN64210.1| truncated phage-related DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 205 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 84/208 (40%), Positives = 108/208 (51%), Gaps = 11/208 (5%) Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 ++A +W + NH AC+ K+AWR H ++ W L A I Sbjct: 2 PIQEAVEALQWTKANHRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIG 61 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQL 587 + + + ++ + L L LPSGR L Y D SY+ T TR+ Sbjct: 62 HPETA-----HTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKW 116 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML 647 TR TYGGKL ENI QAVSRD+LA M AGY IVLTVHDEI+ E D FNA+ L Sbjct: 117 TRITTYGGKLVENITQAVSRDVLAACMPAIETAGYAIVLTVHDEIITEADDNAAFNAAHL 176 Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRYRK 675 LM + P WA+GLPL AEG+++ RYRK Sbjct: 177 AALMATPPPWAQGLPLAAEGFQTHRYRK 204 >gi|17933644|ref|NP_524333.1| mutagen-sensitive 308 [Drosophila melanogaster] gi|2340084|gb|AAB67306.1| Mus308 [Drosophila melanogaster] gi|7299675|gb|AAF54858.1| mutagen-sensitive 308 [Drosophila melanogaster] gi|201065649|gb|ACH92234.1| FI03732p [Drosophila melanogaster] Length = 2059 Score = 154 bits (388), Expect = 5e-35, Method: Composition-based stats. Identities = 97/676 (14%), Positives = 191/676 (28%), Gaps = 141/676 (20%) Query: 30 VILFAFGFDDHPVELWDCVHDPVM----------PQVLKEALENTDVTIVAHNSYFERTV 79 + +F D+ W+ D Q L + D+T+V H+ + + Sbjct: 1487 ISGVSFCLADNVAYYWNMQIDERAAYQGVPTPLKVQELCNLMARKDLTLVMHDGKEQLKM 1546 Query: 80 LKACFNLDIPI-----HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134 L+ IP + V L + E L Sbjct: 1547 LRKA----IPQLKRISAKLEDAKVANWLLQP----DKTVNFLNMCQTFAPECTGLANLCG 1598 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------------SK 181 G + R E C VT I + Sbjct: 1599 SGRGYSSYGLDTSSAILPRIRTAIESC-----VTLHILQGQTENLSRIGNGDLLKFFHDI 1653 Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E + + G+ L Q + K++ ++ + + + Sbjct: 1654 EMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQHGSR-FNLGSSQAVAK 1712 Query: 242 WLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 L GLH + TT ++VL +P + + R + S + L+E + Sbjct: 1713 VL----GLHRKAKGRVTTSRQVLEKL--NSPISHLILGYR-KLSGLLAKSIQPLMECCQA 1765 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 D R Q + + TGR S QN+ + S ++ Sbjct: 1766 D---RIHGQSITYTATGRISMTEPNLQNVAK------------------EFSIQVGSDVV 1804 Query: 361 SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 RS + E + L+ AD +E R+LA M+ ++ L+ ++ +DL++ A + Sbjct: 1805 HISCRSPFMPTDESRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKI 1864 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 ++VT+D R K + + Y G ++ + LN + + ++ + ++ Sbjct: 1865 EESEVTQDLRNSTKQVCYGIVYGMGMRSLAE-----SLNCSEQEARMISDQFHQAYKGIR 1919 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 ++ + + G ++ +S V L N+ + + G A Sbjct: 1920 DYTTRVVNFARSKGFVETITGR-----RRYLENINSDVEHLKNQAERQAVNSTIQGSAAD 1974 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 K R Sbjct: 1975 IAK-------------------------------NAILKMEKNIERYRE----------- 1992 Query: 600 NIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWA 658 D+V+ +HDE++ E P + + L M + Sbjct: 1993 -----------KLA---LGDNSVDLVMHLHDELIFEVPTGKAKKIAKVLSLTMENCVK-- 2036 Query: 659 KGLPLKAEGYESKRYR 674 +PLK + + + Sbjct: 2037 LSVPLKVKLRIGRSWG 2052 >gi|218508767|ref|ZP_03506645.1| DNA polymerase I [Rhizobium etli Brasil 5] Length = 201 Score = 153 bits (387), Expect = 8e-35, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 80/237 (33%), Gaps = 36/237 (15%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L ++ + + T L ++ TGR S QN+P + + Sbjct: 1 TDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRK------------ 48 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R+ I++ G KL+ AD + IE RVLA +A KAFE G D++ Sbjct: 49 -------------IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHA 95 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + F V + + R K + + Y A L++ Sbjct: 96 MTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISA-----FGLANQLSIERSEAGDYIKK 150 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 E + ++ + + + G + ++ V L L +A Sbjct: 151 YFERFPGIRDYMESRKAMARDKGYVETIFGR------RINYSRNPLVQSLRARLQRA 201 >gi|60678001|gb|AAX33507.1| LP14642p [Drosophila melanogaster] Length = 2059 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 97/676 (14%), Positives = 191/676 (28%), Gaps = 141/676 (20%) Query: 30 VILFAFGFDDHPVELWDCVHDPVM----------PQVLKEALENTDVTIVAHNSYFERTV 79 + +F D+ W+ D Q L + D+T+V H+ + + Sbjct: 1487 ISGVSFCLADNVAYYWNMQIDERAAYQGVPTPLKVQELCNLMARKDLTLVMHDGKEQLKM 1546 Query: 80 LKACFNLDIPI-----HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134 L+ IP + V L + E L Sbjct: 1547 LRKA----IPQLKRISAKLEDAKVANWLLQP----DKTVNFLNMCQTFAPECTGLANLCG 1598 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------------SK 181 G + R E C VT I + Sbjct: 1599 SGRGYSSYGLDTSSAILPRIRTAIESC-----VTLHILQGQTENLSRIGNGDLLKFFHDI 1653 Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E + + G+ L Q + K++ ++ + + + Sbjct: 1654 EMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQHGSR-FNLGSSQAVAK 1712 Query: 242 WLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 L GLH + TT ++VL +P + + R + S + L+E + Sbjct: 1713 VL----GLHRKAKGRVTTSRQVLEKL--NSPISHLILGYR-KLSGLLAKSIQPLMECCQA 1765 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 D R Q + + TGR S QN+ + S ++ Sbjct: 1766 D---RIHGQSITYTATGRISMTEPNLQNVAK------------------EFSIQVGSDVV 1804 Query: 361 SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 RS + E + L+ AD +E R+LA M+ ++ L+ ++ +DL++ A + Sbjct: 1805 HISCRSPFMPTDESRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKI 1864 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 ++VT+D R K + + Y G ++ + LN + + ++ + ++ Sbjct: 1865 EESEVTQDLRNSTKQVCYGIVYGMGMRSLAE-----SLNCSEQEARMISDQFHQAYKGIR 1919 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 ++ + + G ++ +S V L N+ + + G A Sbjct: 1920 DYTTRVVNFAHSKGFVETITGR-----RRYLENINSDVEHLKNQAERQAVNSTIQGSAAD 1974 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 K R Sbjct: 1975 IAK-------------------------------NAILKMEKNIERYRE----------- 1992 Query: 600 NIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWA 658 D+V+ +HDE++ E P + + L M + Sbjct: 1993 -----------KLA---LGDNSVDLVMHLHDELIFEVPTGKAKKIAKVLSLTMENCVK-- 2036 Query: 659 KGLPLKAEGYESKRYR 674 +PLK + + + Sbjct: 2037 LSVPLKVKLRIGRSWG 2052 >gi|328553017|gb|AEB23509.1| DNA polymerase I [Bacillus amyloliquefaciens TA208] Length = 763 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 93/785 (11%), Positives = 186/785 (23%), Gaps = 186/785 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELWDCVHDPVMPQ 55 +D ET G+ + + +F + D+ ++ + Sbjct: 36 KLCVLDSETT--------GLHIIKDKPFMWVFGWMLPKEKRTDEIKGRVFAFDSKAEILL 87 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI----HRWICTL---------VLARS 102 + AL V V HN ++ +L + + T+ V AR Sbjct: 88 QVI-ALTKKCVMTVGHNVKYDLHMLIN-GGISEKVVYGLKNITDTMGLCRFSFDAVSARD 145 Query: 103 NGLPSALKAVGEAL-----------------KLSSQKMEEGKEL---------------- 129 G LK V E K++ K KEL Sbjct: 146 GGDVLGLKKVSEKYIDPKAGEFEKEVKKELRKINDAKRNILKELLKPYKGWGLGKIKEAY 205 Query: 130 -------IARFCKGET----HECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-------- 170 + F K + N F +Y + D + E Sbjct: 206 KVKKRNEMDYFTKEKKQRWLKVPEEIENVYFKWMEENPFADYSEVDRDIMMEYVHSDGIY 265 Query: 171 ------------IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + ++ + + +E +L + G VD+ H+ + + E KL Sbjct: 266 TLELVEFTYSTVLKRKQKAILEQENKLIIELLKMERVGMKVDMPYLHSCFKKCEDEIQKL 325 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278 +EL + + + + + G E ++ ++ + Q+ Sbjct: 326 YEELWGIVG-EYFTVSQGTVIADYFEKKLGERPETTDKSFLKK------HKDDRVSQLIT 378 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R + ++ ++E D S Q P Sbjct: 379 RLRRLEKWQSTYISRIIEVAQYDNHFYTQYGQFNTVSGRLGS----DAQQFP----KERI 430 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK--KLVVADLAGIEARVLAWMA--- 393 L + P++ R I G K+ DL+ IE R A Sbjct: 431 LTEEGELYEKENGEGKAPIEYEIFSPRRAFIVEGGNYNKIAYFDLSQIELRAQANYTVLL 490 Query: 394 --GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG-------- 443 + +A+ + + T + + + L G Sbjct: 491 KKPDLNLCRAYMPFKCTHYITGEEFRYDTKEERARWYEKKEDGTSVWLLENGESWTPTDV 550 Query: 444 ----GAKAFQKMA-------STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 +A + NF R + Sbjct: 551 HSETSHNTLMALAFKCVDKYKQYEHEKESPVDEKSFKKFWRYIGKMFNFMRNYGGGAKKA 610 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + W VS ++ + +N A R K Sbjct: 611 SEALEVSMEIANALVSGWSNTFPEVSYYQKQV---AAKVQKNSYATNMYGRVYFLSNTDK 667 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 K+ +VQ D+L Sbjct: 668 -----------------------------------------AYKVGNYLVQGSCADMLKG 686 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 ++ + +HDE+ +E+ + +M W + +P+ + Sbjct: 687 YVIRIGEFLRENNCKTLPLANIHDELQFLVHKGEEWIFPHIKRIMED-VEWMQ-VPVVVD 744 Query: 667 GYESK 671 ++ Sbjct: 745 LEITE 749 >gi|298241730|ref|ZP_06965537.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963] gi|297554784|gb|EFH88648.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963] Length = 531 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 83/557 (14%), Positives = 152/557 (27%), Gaps = 157/557 (28%) Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ---------ELWYLDQT 191 L+ R Y D+ + I + P +++ E Sbjct: 22 GLHTRPTEWAAPFPAEQLVYMVQDIEIPYAIAQHQRPRIKEQKLARVVHLENEAVPALAA 81 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS------------------ 233 + RG C+DV ++ + L+ L + + Sbjct: 82 MEMRGVCIDVERWRSILARKQARQQALEPGLRETLGTALQRACDDYQVALTREEKRLVEA 141 Query: 234 --RCLEKLKTWLFLETGL------------HLEDLT--------------------ETTC 259 + LF GL E T T Sbjct: 142 YRANPAQSSWGLFRRKGLAQWQATHKKPPQPKERGTINLASPPQLLAALRALGVPVSATD 201 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 + L K + + A L+ +++DGRLR +GA+ GR Sbjct: 202 EETLEPYAKEHAAVASLLQ-WKELHKFASSFGENLLAMVDTDGRLRTDYAQIGAAS-GRI 259 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 Q +P + + + VR C +A G +++ A Sbjct: 260 ICSKPNLQQIP----------------------AEEEEEGQEEPVRHCFVAPPGYRILKA 297 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 DL+ IE R+LA ++ +Q L+ F G+DL+ T F+++P TK G Sbjct: 298 DLSNIELRILAEVSRDQTMLRLFAEGKDLHAETAKLMFHLSPETDTKRHLYKG------- 350 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 G+ N A+ Sbjct: 351 VPGRKIAKTINFGLAYGMGANGLANRA------------------------------GVD 380 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + + + + + + ++ L +Q +E G A+ Sbjct: 381 LPTAKSLIRTYFETYRGIARW---LPLTAKQALEQGYAVTLA------------------ 419 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 GR + + + + R + ++ + DIL + Sbjct: 420 -----GRRRTFASIPTSVDWNREVRASAERSA------KNHPIRGTNADILKRALALLHA 468 Query: 620 A---GYDIVLTVHDEIV 633 + G ++L VHDEIV Sbjct: 469 SLPSGAHLILAVHDEIV 485 >gi|331013568|gb|EGH93624.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 443 Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 81/261 (31%), Gaps = 39/261 (14%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 81 AQRAQLVGLSFATQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 140 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +D+ R T++ + + + + K Sbjct: 141 FAINLLANCALDGDQTQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 190 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G+Y + +T + + E Sbjct: 191 YLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQP 250 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 251 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 309 Query: 237 EKLKTWLFLETGLHLEDLTET 257 ++L L+ + G+ + T T Sbjct: 310 KQLGVILYEKLGMPILSKTAT 330 >gi|70935833|ref|XP_738948.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56515564|emb|CAH87194.1| hypothetical protein PC302363.00.0 [Plasmodium chabaudi chabaudi] Length = 287 Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 59/400 (14%), Positives = 106/400 (26%), Gaps = 122/400 (30%) Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + L +N T + +GR+S Q +PR Sbjct: 1 MYKLYSAFYLKLPLHINKQTNKIHTTFNQLKTFSGRFSSEKPNLQQIPR----------- 49 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +R I SE ++AD IE ++ A + ++ LKA+ Sbjct: 50 ------------------QQNIREIFIPSENNIFIIADFKQIELKIAAEITNDEIMLKAY 91 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 DL+ T + ++ K+ R + K + L Y + A+T Sbjct: 92 NNNIDLHTLTASIITKKGIDEINKEDRHVAKAINFGLLYGMNYVNLRTYANTY------- 144 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 C ++ + + +S Sbjct: 145 -------------------------------YNVKMNLDQCLYFYNSFFEHYKGLSRWH- 172 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + +QT + ++ ++ P Sbjct: 173 ---NSVKQTRALEYSTLSNRKVVFPYFSFT------------------------------ 199 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPD 638 K VQ DIL ++ K I+L VHDEI+ E Sbjct: 200 -------------KALNYPVQGTCADILKLALVELYKNLRHINGKIILCVHDEIIIEVDK 246 Query: 639 T-DEFNASMLYHLMTSNPSWAKGLPLKAEGY--ESKRYRK 675 E +L M S+ S+ +K E ++ + K Sbjct: 247 KHQEEALKILVESMESSASFFLK-KVKCEVSAKIAQNWGK 285 >gi|28199207|ref|NP_779521.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182681937|ref|YP_001830097.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|28057313|gb|AAO29170.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182632047|gb|ACB92823.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|307578195|gb|ADN62164.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 377 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 103/261 (39%), Positives = 141/261 (54%), Gaps = 5/261 (1%) Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQI 210 W F +Y + DV R++ KRL + EL W+LDQTINDRG VD LA Sbjct: 2 DWAQFVDYARRDVAAMRDVVKRLPSHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGA 61 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270 V+ + L + LT G+V ++ + L L G+ L D+ + T +R L + L Sbjct: 62 VERAKQALAERTSDLTAGVVQAATQRDALLHHLSTAHGVALPDMQQHTVERCL-DDPLLP 120 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 ++ + R +AS ++ K L+ + DGRLRGTLQF GASRTGRW+G +F P NLP Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180 Query: 331 RPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 RP+ S E + I + D + + S +RSC+IA KKLVVADL+ IE RV Sbjct: 181 RPTLSQEAITVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRV 240 Query: 389 LAWMAGEQWKLKAFETGEDLY 409 LAW+AGE KL AF + Sbjct: 241 LAWLAGETPKLHAFGEFDTCQ 261 >gi|291545365|emb|CBL18473.1| hypothetical protein CK1_00910 [Ruminococcus sp. SR1/5] Length = 124 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S + L K G+ +Y E D ++LFA+ D+ PV++ D +P+ + Sbjct: 1 MKTLSIDIETYSDVPLQKTGVYRYVESPDFEILLFAYSVDNQPVQVIDLACGEQIPKEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAV 112 ALE+ V A N+ FER L + W C+++ + + GLP +L+ V Sbjct: 61 LALEDECVIKWAFNATFERICLSRFLGYPTGEYLKPESWRCSMIWSATMGLPLSLEGV 118 >gi|289642848|ref|ZP_06474984.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata] gi|289507325|gb|EFD28288.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata] Length = 608 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 108/695 (15%), Positives = 189/695 (27%), Gaps = 160/695 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L +D ETR+ D G + D + L G V DP + L Sbjct: 39 ILGLDVETRALPD---TGPRHFGPDAGLRLVQLGTA--TVAWVLDPLDPAQRAAIAAVLG 93 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL----PSALKAVGEALKL 118 + V H + F+ + + + + R T ++++ LK + Sbjct: 94 DPGRRFVTH-TSFDTLAVWSALAIGL-GQRVADTHLISKLVDPDERAGHGLKTLTARHLD 151 Query: 119 SSQKM--EEGKELIARFCKGETHECLYDRNKPNH--REAWRLFGEYCKGDVTVTREIFKR 174 + + + + Y + + V ++ Sbjct: 152 DGLTLAQTALYARMRALAPPGERAGERWKTWGWAHLPADDEAYVVYVRRLLPVLLDLCGP 211 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 L EQ L I RG +D+ V+ + +E+ +S R Sbjct: 212 FSHLVPVEQWLAAQSVGITIRGLALDLPYTRAYLAQVEADHHAAAALIEAELGCPPTSPR 271 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL--------TPQAIQVFNNRMRASRS 286 + L T G L++ + + Q ++ R R + + Sbjct: 272 FADWLDTQHVP--GPRTATGRLQVTADTLTALARDLDTGRLTVSDQVRRMLTARGRVAAT 329 Query: 287 AVL--KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + L + + A + GR+ + L A +TGR S Q L + Sbjct: 330 SNTIANLRSFLAAADPAGRVHPQINTLRA-KTGRMSITGPALQTLKKGDPR--------- 379 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +R C A G L+ D + +E RV A ++ + + Sbjct: 380 -------------------LRHCFQADPGHVLISCDFSQVEVRVTAALSRDPALTDVLAS 420 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 G D++ T F TKDQR + K Y GGA+A Sbjct: 421 GVDIHDATARLLFG---DGFTKDQRTLAKRATFGTIYGGGARALMN-------------- 463 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 V WR + V+ Sbjct: 464 ------------------------------ATGATHQVATDVITRWRAAYPGVAAY---- 489 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 + N SGR + + Sbjct: 490 --SARLADHNPVITG------------------------SGRRIPADPL----------- 512 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMN-ATKAGYD--IVLTVHDEIVCETPDTDE 641 R Y VQ+ +RD+L + T+ G + L VHDE++ P Sbjct: 513 ----RPYANA----NYAVQSTARDLLVTAVHTLVTRHGLHDALWLFVHDEVIVHVPTDRA 564 Query: 642 FNA-SMLYHLMTSNPSWAKGLPLKAEGYE-SKRYR 674 + L MT++ +G+ + AE + Sbjct: 565 AQVAADLQAAMTTSF---RGVAITAEADILGTHWG 596 >gi|148872874|gb|ABR15064.1| DNA polymerase I [Campylobacter jejuni] gi|148872876|gb|ABR15065.1| DNA polymerase I [Campylobacter jejuni] Length = 234 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 87/256 (33%), Gaps = 38/256 (14%) Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM--NSDGRLRGT 307 +T ++VL++ P ++ + R ++ L++ + + R+ + Sbjct: 2 KKGKTGYSTDEKVLNALLDKHPVIAKILDYR-ELAKLYSTYCEPLLKLALKDKNSRIYSS 60 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 G + TGR S QN+P + ++ +SC Sbjct: 61 FLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY-------------------------KSC 94 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 +A +G + D + IE R+LA + ++ L AF ED++ T F + + Sbjct: 95 FVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYE 150 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R++ K + L Y G K + L + E + + + ++ Sbjct: 151 TRSVAKSINFGLIYGMGYKTLSQ-----NLKIEAHLAKSYIEKYFENFTSIKKYFETVKN 205 Query: 488 NHPEHAIEDLFIGTAC 503 ++ G Sbjct: 206 KAKQNGFITTLSGRKR 221 >gi|29366786|ref|NP_813726.1| gp11 [Streptomyces phage phiBT1] gi|29243106|emb|CAD80134.1| gp11 [Streptomyces phage phiBT1] Length = 624 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 107/713 (15%), Positives = 176/713 (24%), Gaps = 177/713 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L +D ET G+ YA + FG H + + KEA Sbjct: 36 ELALDTETT--------GLDIYAPGYGLRTVQFGT-THEAWVI----HYELRGRFKEA-- 80 Query: 63 NTDVTIVA-----HNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPS-------- 107 V HN+ F+ VL A ++ + R I T + A Sbjct: 81 ADYVLKHCPRFLIHNAMFDWLVLDAHADVSLESLAPRTIDTKIKATLIDPRQPQEGGIGT 140 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 LK + S +G G T + H + Y DV Sbjct: 141 GLKPLSAFYVDPSAPDTQGDLTAVFRSLGLTKATGFAGIDLRHP----TYNLYAGLDVIY 196 Query: 168 TREIFKRLE----------PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 T + L+ L+ E E+ Y+ + G +D+ TL +++ E K Sbjct: 197 TARLNPCLDVEHERLGVRAALTDYEHEIAYMCAYMQRAGLVLDLEYVDTLRRMLREEEDK 256 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLF---LETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 V S ++ L + ++VL L Sbjct: 257 YATIA---ASWGVESVNSGAQVSEALLAMGETLTETTDGGALKVSKKVLLPLADLDRDWE 313 Query: 275 QV-----------FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 ++ RA + + E + GR+ T+ L A Sbjct: 314 RIGAREPNPLAEAVLRAKRAGKWVSSYADKFAENHDPLGRIHPTINTLQARTGRMSISGD 373 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLA 382 F Q LP +R V+ + D Sbjct: 374 FAAQTLPS----------------------------SDWMIRRAVLGDKPDHIVGSVDFQ 405 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RVLA +AG + + F + P Sbjct: 406 AIEMRVLAALAGVRRMTEGFLDPDPDPSVY--------PDGFDIHMYTA----------- 446 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + F + + + Sbjct: 447 ------------------RLIKGPNATKRDRKVFKGAGFGKVYGGGIKTISRQTGAPEHE 488 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 R + + + ++ + + + Sbjct: 489 IARAVAEYDRVFPEIKRASSKWQREAR-------------------------ARGCVTVT 523 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 P+GR L R Y + Q+ +RD+L + M+N AG Sbjct: 524 PTGRILPLD-----------------RNRMYA--VVNYKCQSTARDVLGQAMINMRDAGL 564 Query: 623 --DIVLTVHDEIVCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672 + L +HDEIV P + A M G+P+ AE R Sbjct: 565 LEYMKLPIHDEIVFSAPKSDAQDIAREFERCM--TMDL-FGVPVVAEADLGGR 614 >gi|330872927|gb|EGH07076.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4] Length = 601 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 81/261 (31%), Gaps = 39/261 (14%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 F +L C +D+ R T++ + + + + K Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 L + + + A G+Y + +T + + E Sbjct: 457 YLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQP 516 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + I +G VD L + + + T L++E ++ + Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTET 257 ++L L+ + G+ + T T Sbjct: 576 KQLGVILYEKLGMPILSKTAT 596 >gi|15838881|ref|NP_299569.1| hypothetical protein XF2290 [Xylella fastidiosa 9a5c] gi|9107454|gb|AAF85089.1|AE004041_1 phage-related protein [Xylella fastidiosa 9a5c] Length = 312 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 103/261 (39%), Positives = 140/261 (53%), Gaps = 5/261 (1%) Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQI 210 W F EY + DV R++ KRL + EL W+LDQTINDRG +D L Sbjct: 2 DWAQFVEYARRDVAAMRDVVKRLPSHNYAGAELALWFLDQTINDRGVLIDTDLVQAAIGA 61 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270 V+ + L Q E+LT G V ++ + L L G+ L D+ + T R + + L Sbjct: 62 VERAKQTLAQRTEALTGGAVQAATQRDALLQHLNTAHGVALPDMQQHTVARCV-DDPALP 120 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 ++ + R +AS ++ K L+ + DGRLRGTLQF GASRTGRW+G +F P NLP Sbjct: 121 ETVRELLSIRRQASSTSTAKYQALLHCTSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180 Query: 331 RPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 RP+ S E + I + D + + S +RSC+IA KKLVVADL+ IE RV Sbjct: 181 RPTLSQEVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSIIEGRV 240 Query: 389 LAWMAGEQWKLKAFETGEDLY 409 LAW+AGE KL AF + Sbjct: 241 LAWLAGETPKLHAFREFDTCQ 261 >gi|40807290|ref|NP_047956.2| gp11 [Streptomyces phage phiC31] gi|579076|emb|CAA53907.1| unnamed protein product [Streptomyces phage phiC31] gi|40313247|emb|CAA07135.2| gp11 [Streptomyces phage phiC31] Length = 617 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 102/713 (14%), Positives = 175/713 (24%), Gaps = 184/713 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L +D ET G+ Y+ + FG H + + Sbjct: 36 ELALDTETT--------GLAMYSSGYKLRTVQFGT-AHEAWVIHYELGGRFAE------A 80 Query: 63 NTDVTIVA-----HNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPS-------- 107 V HN+ F+ VL A + + R + T + A Sbjct: 81 ADYVLKHCPRFLIHNAPFDWLVLDAHTPVSMESLAPRTVDTKIKATLIDPRQPQDGGIGT 140 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 LK + S +G G T E + H + Y DV Sbjct: 141 GLKPLSAFYVDPSAPDTQGDLTAVFRSLGLTKETGWAGIDLRHP----TYNLYAGLDVIY 196 Query: 168 TREIFKRLEPL----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 T + L+ E E+ Y+ + G +D+ TL +++ R + Sbjct: 197 TARLNPCLDAEHARLSIRPTLLEYEHEIAYMCAYMQRAGLALDLEYVDTLRRML---REE 253 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLF---LETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 ++ L + V S ++ L + + VL L Sbjct: 254 EEKHLYAAAMWGVDSVNSGAQVAEALLAMGETLTQRTDGGALKVDKAVLLPLADLDRDWE 313 Query: 275 QV-----------FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 ++ RA + + + GR+ + L A Sbjct: 314 RIGAREPNPLAEAVLRAKRAGKWVTTYADRFANNHDPHGRIHPNINTLQARTGRMSINGD 373 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLA 382 F Q LP +R ++ + D Sbjct: 374 FAAQTLPS----------------------------SDWMIRRAIVGDAPDHIMGSVDFQ 405 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RVLA +A + F G + + + + TK R + K Sbjct: 406 AIEMRVLAALADVKRMKDGFVNGGSDFDIHMYTAQLIKGLEATKRDRKVFKGAGFG---- 461 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + A + Sbjct: 462 ----------------------------------------KVYGGGVATIARQTGATEAE 481 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 R + + + + + T ++ Sbjct: 482 IARAVAEYDRVFPEIKRASSRWQREARGTGLVTVSVT----------------------- 518 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 GR L R TY + Q+ +RD+L + M+N AG Sbjct: 519 --GRRLPLD-----------------RNRTYA--VVNYQCQSAARDVLGQAMLNMRDAGL 557 Query: 623 --DIVLTVHDEIVCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672 + L +HDEIV P + A M G+P+ A+ R Sbjct: 558 LDYMKLPIHDEIVFSAPKADAKDIAREFEKCM--TMDL-FGVPVVADADLGGR 607 >gi|195399626|ref|XP_002058420.1| GJ14321 [Drosophila virilis] gi|194141980|gb|EDW58388.1| GJ14321 [Drosophila virilis] Length = 2086 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 88/696 (12%), Positives = 200/696 (28%), Gaps = 163/696 (23%) Query: 21 ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----------PQVLKEALENTDVTIVA 70 + + + + AF D+ + + + ++L L ++T++ Sbjct: 1505 LYQVDDGAYLAGIAFCLSDNVAFYMNMQAEEELEQQPVSTEQKVELLCSLLSRPELTLLI 1564 Query: 71 HNSYFERTVLKACFN---------LDIPIHRW-------------------ICTLVLARS 102 H+ + L+ D + W CT + + Sbjct: 1565 HDGKDQLKALRQALPQLKGMQVKLEDPKVGNWLLQPDKTLSFQNMCQQFAPECTAL-SHL 1623 Query: 103 NGLPSALKAVGEALKLSSQKMEEGK--ELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 G + L + GK I E G Sbjct: 1624 CGSGRGYSS----YGLDASSAILGKVRASIEACLSVHILNGQL--------ENLERIG-- 1669 Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 T ++ L+ E + + G+ L Q + KL+ Sbjct: 1670 -------TGQL---LKFFRELEMPIQMSLCNMECLGFPAQEQRLQRLLQQMLATMKKLEV 1719 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 ++ L + + + L L + +T +++L +P + + ++R Sbjct: 1720 KIFELHGSR-FNLGSTQAVAKVLGLHRKA---NGRISTSRQILEKL--DSPISQLILDHR 1773 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + S + L++ ++ R Q + + TGR S QN+ + Sbjct: 1774 -KLSMVLAKNMQPLLKCCQAN---RVHGQSITYTATGRISMSEPNLQNVAK--------- 1820 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 + I+ RS ++S E L+ AD +E R+LA ++ ++ L Sbjct: 1821 ---------DFLVDLGQEKINISCRSAFVSSNEKHCLLSADFCQLEMRILAHLSQDKALL 1871 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 K + +DL+ A +A + V++ R K + + Y G ++ + L Sbjct: 1872 KVMNSPQDLFTAIAAHWNKIAESDVSEQLRNGTKQICYGIVYGMGMRSLAE-----SLKC 1926 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + + + + + + + G R +S + Sbjct: 1927 TEQEAQMISEQFHLAYAGIKAYASKVVKFARNNGYVETITGR--RRYLD---HINSGEPQ 1981 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 L N+ + + G S Sbjct: 1982 LKNQAERQAINSTIQG------------------------------------------SA 1999 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + + R + E + ++ + ++VL +HDE++ E P Sbjct: 2000 ADIAKSAILRMEKNIARYREKL--GLA------------ENAVNLVLHLHDELIFEVPAD 2045 Query: 640 DEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRYR 674 + + L M + +PL+ + + + Sbjct: 2046 KAKKVAKVLSLTMENCVK--LNVPLRVKLKIGRSWG 2079 >gi|281207443|gb|EFA81626.1| DNA polymerase theta short isoform [Polysphondylium pallidum PN500] Length = 1192 Score = 150 bits (379), Expect = 6e-34, Method: Composition-based stats. Identities = 81/715 (11%), Positives = 183/715 (25%), Gaps = 147/715 (20%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-PVELWDCVHDPVMPQV--------- 56 D ET L V + V + Sbjct: 540 DEETFFLPKL-----------FHVESIIVSWSPGLAVYQLPLAPSGGVADFKQSFYNDNW 588 Query: 57 --LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 +K+ LE NS + +L + + + HR I + E Sbjct: 589 KLVKQVLEYPYSYKHIWNSKPQLKILLS-KGISLK-HRLIDPKIALWLTDSDLHKDKKLE 646 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + + K G + + K L R+ + Y T + +R Sbjct: 647 YVYMDNAK---GSKKMIGATKFHNISKLATRSGSTNHFDLAYQACYQ------TLILSQR 697 Query: 175 LEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L E + + + G D + ++V + L + L Sbjct: 698 LLKQLDPSSLKILFEIEMPVTPILARMEFIGIGFDDEICQNTRELVQKKIDYLIYKAHLL 757 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE---------DLTETTCQRVLSSNKKLTPQAIQV 276 L ++ ++ L + +T L + P + Sbjct: 758 VPRLKLDMESKIQMSDVMYNWLKLTKPDSRTNKKVLKESYSTNAHHLETISHEHPFP-NI 816 Query: 277 FNNRMRASRSAVLKLNTLVEAM---NSDGRLRGTLQFLGASRTGRWSGCVFPPQNL---- 329 + S + L + + + TGR + Q++ Sbjct: 817 LMEYRKLSHHINNYADELRKYCYRSTDNSMRIYSTILQTIVPTGRLAMVFPNLQSIAHPI 876 Query: 330 -----PRPSRSHEELDQIITHLPTSITSDPDPL-------------QIISDCVRSCVIAS 371 P + S + + + + + +S +R + Sbjct: 877 EFKVAPTFTPSPLSIASNSSDIEIPAVDLENHSSQYNNLVAMESKCETLSIKIRDSFLPK 936 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-GEDLYVTTYARSFNVAPAQVTKDQRA 430 +G + AD + IE R+LA + + L+ F D++ + + Q+ R Sbjct: 937 QGYIFLSADYSQIELRILAHFSQDPKLLEIFNNSTVDVFKLISHQMSKIPLEQIKDSDRT 996 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 I K + + Y G LN ++ ++ + ++ Sbjct: 997 IAKHLCYGILYGMGIGKLAH-----DLNTTKDKAKAALLRFKTTYQVLTDYLTSVGDSCL 1051 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 ++ + F G + ++ V + ++ E K I + Sbjct: 1052 KNGFVETFFGRK------RYFREVFEVYKDTKVTNEVKESAKRKAKNTIPQGTA------ 1099 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 D+ + + + + R + +I+ Sbjct: 1100 --------------------ADI-SKLAMIQVDKKLNER--------------GIPAEIV 1124 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664 + E++ E P++ +++ M S + +P+K Sbjct: 1125 ----LQVHD-----------ELLLEVPESQLAEVALIVKESMESAAKLSIPIPIK 1164 >gi|148872872|gb|ABR15063.1| DNA polymerase I [Campylobacter jejuni] Length = 234 Score = 150 bits (378), Expect = 9e-34, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 86/256 (33%), Gaps = 38/256 (14%) Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM--NSDGRLRGT 307 +T ++VL+ P ++ + R ++ L++ + + R+ + Sbjct: 2 KKGKTGYSTDEKVLNILLDKHPVIAKILDYR-ELAKLYSTYCEPLLKLALKDKNSRIYSS 60 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 G + TGR S QN+P + ++ +SC Sbjct: 61 FLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY-------------------------KSC 94 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 +A +G + D + IE R+LA + ++ L AF ED++ T F + + Sbjct: 95 FVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYE 150 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R++ K + L Y G K + L + E + + + ++ Sbjct: 151 TRSVAKSINFGLIYGMGYKTLSQ-----NLKIEANLAKSYIEKYFENFTSIKKYFEKVKN 205 Query: 488 NHPEHAIEDLFIGTAC 503 ++ G Sbjct: 206 EAKQNGFIVTLSGRKR 221 >gi|195571339|ref|XP_002103661.1| GD20546 [Drosophila simulans] gi|194199588|gb|EDX13164.1| GD20546 [Drosophila simulans] Length = 967 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 97/672 (14%), Positives = 187/672 (27%), Gaps = 134/672 (19%) Query: 30 VILFAFGFDDHPVELWDCVHDPVM----------PQVLKEALENTDVTIVAHNSYFERTV 79 + +F D+ W+ D Q L + D+T+V H+ + + Sbjct: 396 ISCVSFCRADNVAFYWNMQIDDRAACQGVPTPLKVQELCNLMARKDLTLVMHDGKEQLKM 455 Query: 80 LKACFNLDIPIH-RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138 L+ I + V L + E L G Sbjct: 456 LRKAIPQLQKISVKLEDAKVANWLLQP----DKTVNFLNMCQTFAPECTGLANLCGSGRG 511 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-------------FKRLEPLSSKEQEL 185 + R E C VT I L+ E + Sbjct: 512 YSSYGLDTSSAILPRIRTAIESC-----VTLHILKGQTENLGRIGEGNLLKFFHDIEMPI 566 Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 + G+ L Q + KL+ ++ + + + L Sbjct: 567 QLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKLETKIYEQHGSR-FNLGSSQAVAKVL-- 623 Query: 246 ETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 GLH + TT ++VL +P + + R + S + L+E +D Sbjct: 624 --GLHRKARGRVTTSRQVLEKL--NSPISHLILGYR-KLSCLLAKSIQPLMECCQAD--- 675 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 R Q + + TGR S QN+ + ++ Sbjct: 676 RIHGQSITYTATGRISMTEPNLQNVAK------------------EFCIQVGSDAVNISC 717 Query: 365 RSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 RS + E + L+ AD +E R+LA M+ ++ L+ + +DL++ A + ++ Sbjct: 718 RSPFMPTDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIKESE 777 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT D R K + + Y G ++ + LN + + ++ E ++ ++ R Sbjct: 778 VTPDLRNSTKQVCYGIVYGMGMRSLAE-----SLNCSEQEARIISDQFHEAYKGIRDYTR 832 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 + + G R+ + L +A Q + + Sbjct: 833 RVVNFARGKGFVETITGR---------RRYLEMTNSDMEHLKKAERQAVNS--------- 874 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 L + R Sbjct: 875 TIQGSAADIAKNAILKMEKNIERYRE---------------------------------- 900 Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLP 662 D+V+ +HDE++ E P + + + M S +P Sbjct: 901 -------KLA---LGDKSVDLVMHLHDELIFEVPTGKAKKIAKVLSITMESCVK--LSVP 948 Query: 663 LKAEGYESKRYR 674 LK + + + Sbjct: 949 LKVKLRIGRSWG 960 >gi|163784119|ref|ZP_02179064.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] gi|159880610|gb|EDP74169.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] Length = 374 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 70/489 (14%), Positives = 132/489 (26%), Gaps = 130/489 (26%) Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD L + + + ++ E K+ WL + G+ L + Sbjct: 1 MPVDKNLLKNMLTDIQSKYQRMYIEFVRNYGVDPF---SPAKVSNWLVNKVGITLPKTQK 57 Query: 257 TTCQRVLSSNKKLTP--QAIQVFNNRMRASRSAVLKLNTLVEAMNSDG----RLRGTLQF 310 + KK + Q+ R LK + R+ + Sbjct: 58 GALSSQDKALKKYEHLKEVRQLMEIRTTKKLLDKLKELNEHTRNDPSDSDTVRIHSQFRQ 117 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 +GA TGR S QN+P +R Sbjct: 118 IGAP-TGRMSSSKPNLQNIP-------------------------------PELRVLFRP 145 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 S+G ++VAD + IE R+ A ++ + AF+ G+DL+ T + + ++TK++R Sbjct: 146 SKGYSMIVADYSQIELRIAAEYTNDEVMINAFKEGKDLHRFTASLITGKSYEEITKEERQ 205 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 + K + L Y ++ + A Sbjct: 206 LAKAINFGLIYGISPRSLMEYARNN----------------------------------- 230 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + + Q + + E + + + Sbjct: 231 ---YGVDISLKEAQDFHDKFFQHYRGFKKWHEETKEKLNKHRQ----------------- 270 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + + GR + + +QA D+L Sbjct: 271 -------ITVQSLLGRRMKVSRFTD---------------------AVNYPIQASGSDML 302 Query: 611 AEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPS-WAKGLPLK 664 + + IV VHDEI+ E + A + M K +P++ Sbjct: 303 KMAVNFFGILKKDLNAYIVNLVHDEIIVEAKEDITVQAKNILEESMKKAGKILLKKVPVE 362 Query: 665 AEGYESKRY 673 E K + Sbjct: 363 YEANIVKSW 371 >gi|291335303|gb|ADD94920.1| hypothetical protein DSY4361 [uncultured phage MedDCM-OCT-S01-C29] Length = 478 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 87/585 (14%), Positives = 159/585 (27%), Gaps = 168/585 (28%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---------SKEQELWYLDQTI 192 + + Y DV V E+ + L+ + E + + Sbjct: 7 KEQQKSNWSGVLTQEQLIYAAKDVEVLCELDRILKDELCQYSLMEAFTLECKALPAMAQM 66 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV---------------------- 230 G + + + +L +E + Sbjct: 67 WRTGLPWNKENLAQRKLDYEHDIKELSKEFIRELDSALPEGQKLPRDEDDSFNLRAKDEG 126 Query: 231 -----------SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + ++LK+ L G+ LE + + LS P N Sbjct: 127 SVRAGTKKLKGFNLNSPQQLKSKLSAVLGVKLE----SVSKNALSEFAGHHPVVQMYLN- 181 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 +A + + ++ E M DG ++ + LGA TGR + Q +P+ Sbjct: 182 WKKAEK-RRQMITSIQEKMRPDGFVKASYMQLGAE-TGRMTCFNPNNQQIPKD------- 232 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 R CV A +G +V AD +E R+ A +A ++ + Sbjct: 233 ----------------------KQFRGCVEAPKGWLIVDADFGQMELRLAAAVAQDKKMI 270 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ GEDL+ T R I K L Y GAK + A+ + +++ Sbjct: 271 QAFKDGEDLHTVTAEAI---------GCTRQIAKSANFGLLYGSGAKGLRNYAAGSNVSM 321 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + +E+E +++ Sbjct: 322 TLEEAQKVRSDWFQEFE---------------------------------------GIAK 342 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP-SGRSLVYRDVGNNRS 578 + + + K + +P +G N + Sbjct: 343 WHKKENDKANN---------------PNPRFKGKKCGIQFIEIPETGMRRDLPGDANRLT 387 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG---YDIVLTVHDE 631 VQ IL + + +AG I VHDE Sbjct: 388 VR-----------------CNTPVQGAGAAILKQALGKLWPLVREAGEETVRIAAAVHDE 430 Query: 632 IVCETPDTDEFN-ASMLYHLMTSN-PSWAKGLPLKAEGYESKRYR 674 I+ + A+ L +M W +P AE K ++ Sbjct: 431 ILLLVREDAAEEWAATLKQVMEEAEAKWLGEIPALAEVSFGKTWQ 475 >gi|282857717|ref|ZP_06266926.1| DNA polymerase [Pyramidobacter piscolens W5455] gi|282584387|gb|EFB89746.1| DNA polymerase [Pyramidobacter piscolens W5455] Length = 656 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 96/713 (13%), Positives = 188/713 (26%), Gaps = 159/713 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L D ET +D T C D D P +P ++ Sbjct: 2 LIFDIETDGLLDATTKVHCLTIYDTET--------DESRLYSSRGDYPQIPVGVERLAAA 53 Query: 64 TDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV---------- 112 V HN F+ L + P + TL ++R + L + Sbjct: 54 DCV--CGHNVLAFDIPALTKVYPSFAPKGEVVDTLTISRLI--WTNLADLDFTEIRRAKT 109 Query: 113 -GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + +K+ L A + + + +E Y + DV VTR + Sbjct: 110 PAQPMFFFPKKLVGSHSLKAWGYRLGVLKGEFGETTDW-QEWSEEMCAYNRQDVVVTRAL 168 Query: 172 FKRLEPL------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 ++R++ E + + G+ + A + R +L QEL+ + Sbjct: 169 WERIQEQDYSQTAIDLEHQFQKIILQQEQNGFPFNQEKAVLYYSQLAKRREELTQELQRI 228 Query: 226 TYGLV-----------------------------SSSRCLEKLKTWLFLETGLHL----E 252 + + + L G E Sbjct: 229 FPPEDKGDWFVPKVNNAKRGYVKGERVWRARITAFNPGSRKDIAERLRETRGWEPQEYTE 288 Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T + VLS+ +A+ + + N ++ + DGR+ G + G Sbjct: 289 RGTPKVDEEVLSALDWPEAKALSEYFLVQKRIGQLAEGNNAWLKLVGRDGRIHGHVITNG 348 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 A TGR + +P RS A Sbjct: 349 A-VTGRCTHVSPNMAQVP------------------------AVGVPWGAEFRSLFYAPP 383 Query: 373 GKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 G ++ AD +G+E R LA + D++ VA + + Sbjct: 384 GWSVLGADASGLELRCLAHFMARYDGGAYARKILEGDIHWANAQALGLVAEGEKKDPENP 443 Query: 431 --------IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 + K AL Y G ++ + L +AP+ D + Sbjct: 444 YHMWARNKVAKRFIYALNYGAGDHKLGEL-----VELTDDQAKALLAAAPKSKIDQTSAR 498 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 Q + +D+ ++ + + ++ L ++ + ++ Sbjct: 499 LAKQFQYKTITFKDIAQSLKGAELRATFMKNLPALASLIEDVKRVAKK------------ 546 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 L+ R L R + + ++ Sbjct: 547 --------------RGYLIGLDKRRLNVRSIHS---------------------AFNTLL 571 Query: 603 QAVSRDILAEG-MMNATKA-------GYDIVLTVHDEIVCETPDTDEFNASML 647 Q+ + + + V VHDE + +E + + Sbjct: 572 QSAGAIAVKKATCVLWDDLTTAGLADKVQQVAHVHDEYQLLVKEGEEEHVGQI 624 >gi|109521899|ref|YP_655336.1| gp59 [Mycobacterium phage Pipefish] gi|88910630|gb|ABD58556.1| gp59 [Mycobacterium phage Pipefish] Length = 605 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 119/717 (16%), Positives = 213/717 (29%), Gaps = 192/717 (26%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCV--ILFAFGFDDHPVELWDCVH-DPVMPQVLKE 59 T+ D ET G+ + + + FA+ +DD + + + Sbjct: 36 TIATDIET--------PGLDRA---FEINCVTFAWRWDDGSIHSVLLDPVGNTLHRQACI 84 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNL-----DIPIHRWICTLVLARSNGL----PSALK 110 L TI+ HN+ F+ L L +I I++ + TL+LAR +L Sbjct: 85 DLYERAETIILHNAPFDIPAL-RHAGLFGTSPNIAINKVVDTLLLARFALPDVTVSKSLT 143 Query: 111 AVG-EALKLSSQKME-------EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 A+ L LS K G + I +G + E R L E Sbjct: 144 ALSIRYLGLSDFKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVGAMADTIATLKLEPLL 203 Query: 163 GDVTVTREIFKRL-----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 + + + E + ++ + + +G VD + Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQETVHRVMLRRTGKGLAVDHEYLTRYQEEK 263 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSSN 266 D ER + + L +GL + +K+ +L L + +L Sbjct: 264 DAERIQHEALLA--AHGLEGGAGKGKKIVEYLESIGQLPANWPRTPTGGLKATKDLLDGF 321 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 A + + L + + GR + LGAS TGR + + Sbjct: 322 DHPLTTAQRKLAEIDKVL----GYLTKVERQASVTGRCHPQVGVLGASATGRMAYSMPEL 377 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 Q P+ +R +I +G+ L D + IE Sbjct: 378 QQFPKDARP--------------------------------IITDDGQGLTSIDWSQIEP 405 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 +A MAG+ L FE + RS + TK+ R I KV+ LA Y G Sbjct: 406 VTMANMAGDVGFLIPFEA-GEDLYEPIQRSCGLPM---TKEGRDIAKVVLLATMYGMGVN 461 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 A++ + +++ Sbjct: 462 GL--------------------------------------------ALKINHTVESAQQI 477 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 ++ ++ + +Q ++ +GR Sbjct: 478 RRQMLAAMPESAKWMARVQGIADQ--------------------------YGRIITAAGR 511 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 L D G R VQ + D+L + ++ +AG L Sbjct: 512 ILPVDDGGVFR-------------------AVNYTVQGSALDVLHDTIVRMERAGLADEL 552 Query: 627 TV--HDEIVCETPDTDEFNASMLYHLMTSNPS----WAKGLP-LKAEGYESKR-YRK 675 V HDE++ TP A + +M + P WA +P L+ + + + ++K Sbjct: 553 HVAMHDELIVSTP-----VADEVQQIMLTPPDFLIRWAGRVPVLRTDAADMEHAWKK 604 >gi|260878762|ref|ZP_05891117.1| T7 DNA polymerase [Vibrio parahaemolyticus AN-5034] gi|308091309|gb|EFO41004.1| T7 DNA polymerase [Vibrio parahaemolyticus AN-5034] Length = 683 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 101/775 (13%), Positives = 185/775 (23%), Gaps = 196/775 (25%) Query: 1 MAT-LFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDD-HPVELWD---CVHDPVMP 54 M L D ET I+ E + A D D + + Sbjct: 1 MNERLCYDIETDGLIE----------EVTKLHCIAIINVDTLEEALYADSLVMMTQGTIK 50 Query: 55 QVLKEALENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARS----------- 102 L N + HN ++ V+ ++P + TLV +R Sbjct: 51 DGLDRL--NKASLTLGHNIIKYDHPVINKLTGYELPKDKSFDTLVASRLVFSNIKDIDQG 108 Query: 103 ---------NGLPSALKAVGEALKLSSQKMEE--GKELIARFCKGETHECLYDRNKPNH- 150 +L+A G L QKME + ++ Sbjct: 109 NSGKYTLGKLFGSHSLEAWGIRLG-GQQKMEYAPVIDPAQPVYDPTVKPKDAKKDPRWKG 167 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSK---------EQELWYLDQTINDRGYCVDV 201 + G+YC DV V E+F+RLE + E E ++ G+ D Sbjct: 168 SIFTPMMGDYCMQDVRVNVELFRRLERKIHQLGYARSMLLEHEAAWVLAQQERNGFKFDE 227 Query: 202 ALAHTLNQIVDVERTKLDQELESLTY---------------------------------- 227 A L + R L +L Sbjct: 228 EKAIKLLGRLAGRREYLYNKLIETFGGWWVSDGVSVPARTINYKDPTKPSRVQGAPFTKV 287 Query: 228 -GLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + + + L + +L + + + + Sbjct: 288 KWVDFNPSSRRHIIKVLTDRGWTPQEFTPSGEAKVDESILKELDFPEARLMAEWFLVQKR 347 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + ++ DG +RG++ GA TGR + +P S Sbjct: 348 LGQLADGNQAWLNTVHPDGFIRGSVNPNGA-VTGRATHSFPNVAQVPSCSAE-------- 398 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKA 401 R +G L+ +D +G+E R LA + K Sbjct: 399 ----------------YGAECRELFTVPDGWYLLGSDASGLELRCLANFMARYDDGKYID 442 Query: 402 F-------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + + ++ R K A Y GA+ Sbjct: 443 VVLNGDIHWSNAQAAGFIPKGTIRDPHNPIHEEARRKAKTFIYAFLYGCGAE---LTGQQ 499 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G + + F R + E + E V+K + + Sbjct: 500 VGWTEEE---YLNWKAKGAHKPIINRFKRQGKPWTREK----ICNILKGEEVQKNFMKGL 552 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + L +E + ++ + GR + R Sbjct: 553 PALKNLIDECKELHKE--------------------------QGYIEGIDGRRIYTRSAH 586 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYD------- 623 + ++Q + ++ K G Sbjct: 587 AS---------------------LNTLLQGAGALVCKAWIVEIEKLAIAEGLKHGIDGDF 625 Query: 624 I-VLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLP--LKAEGYESKRYR 674 + VHDE+ + L + +N L A+ K ++ Sbjct: 626 MYCAWVHDEVQIACRTKEIAERIGQLCQVAMTNVEKEFNFVCRLDADFDIGKSWK 680 >gi|145334203|ref|NP_001078482.1| DNA-directed DNA polymerase family protein [Arabidopsis thaliana] gi|62241195|dbj|BAD93700.1| helicase and polymerase containing protein TEBICHI [Arabidopsis thaliana] gi|332660705|gb|AEE86105.1| DNA polymerase theta subunit [Arabidopsis thaliana] Length = 2154 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 92/722 (12%), Positives = 188/722 (26%), Gaps = 151/722 (20%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVL--KEALENT---------------------- 64 + A ++ PV + D + + ++ +E+ Sbjct: 1500 EIHGIAICWNCSPVYYVNLNKDLPNLECVEKQKLIEDAVIGKSEVLASHNMLDVIKSRWN 1559 Query: 65 DVTIVA---------HNSYFERTVLK-------ACFNLDIPIHRWICTLV-LARSNGLPS 107 ++ + N + VLK C L++P LV + P Sbjct: 1560 KISKIMGNVNTRKFTWNLKVQIQVLKSPAISIQRCTRLNLP-EGIRDELVDGSWLMMPPL 1618 Query: 108 A-------------LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 L E + E K L + + Sbjct: 1619 HTSHTIDMSIVIWILWPDEERHSNPNIDKEVKKRLSPEAAEAANRSGRWRNQI------R 1672 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALA 204 R+ C V TR + L + + E L + + G +D+ Sbjct: 1673 RVAHNGCCRRVAQTRALCSALWKILVSEELLQALTTIEMPLVNVLADMELWGIGIDIEGC 1732 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE---DLTE---TT 258 I+ + L+++ L S + LF + L + + +T Sbjct: 1733 LRARNILRDKLRSLEKKAFELAGMT-FSLHNPADIANVLFGQLKLPIPENQSKGKLHPST 1791 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK--LNTLVEAMNSDGRLR-GTLQFLGASR 315 + L + P + +R A + +L + S R ++ Sbjct: 1792 DKHCLDLLRNEHPVVPIIKEHRTLAKLLNCTLGSICSLAKLRLSTQRYTLHGRWLQTSTA 1851 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGK 374 TGR S Q++ + + R + E Sbjct: 1852 TGRLSIEEPNLQSVEHEVEFKLDKNGRDVSSDADRYKINA---------RDFFVPTQENW 1902 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKA-FETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 L+ AD + IE R++A + + + + D++ A+ A V+ R K Sbjct: 1903 LLLTADYSQIELRLMAHFSRDSSLISKLSQPEGDVFTMIAAKWTGKAEDSVSPHDRDQTK 1962 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y GA + L + K S + ++ E Sbjct: 1963 RLIYGILYGMGANRLAE-----QLECTSDEAKEKIRSFKSSFPAVTSWLNETISFCQEKG 2017 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 G K + + ++ + ++ G A K + + Sbjct: 2018 YIQTLKGRRRFLSKIKFGNA-----KEKSKAQRQAVNSMCQGSAADIIKIAMINI----- 2067 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 Y + + +++ TR + G+ Sbjct: 2068 ----------------YSAIAEDVDTAASSSSSETRFHMLKGR--------------CRI 2097 Query: 614 MMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKR 672 ++ E+V E + A+ML M + S +PL + K Sbjct: 2098 LLQVHD-----------ELVLEVDPSYVKLAAMLLQTSMENAVSLL--VPLHVKLKVGKT 2144 Query: 673 YR 674 + Sbjct: 2145 WG 2146 >gi|74002862|ref|XP_545125.2| PREDICTED: similar to DNA polymerase theta (DNA polymerase eta) [Canis familiaris] Length = 576 Score = 148 bits (373), Expect = 3e-33, Method: Composition-based stats. Identities = 67/476 (14%), Positives = 129/476 (27%), Gaps = 92/476 (19%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E Y + G + I+ + ++ + L S + + Sbjct: 129 FCKVEMPSQYCLALLELNGIGFSTTECESQKHIMQAKLDAIEIQAYQLAGHSFSFTSSDD 188 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL------ 291 + VL+ K L P + R + A+ K+ Sbjct: 189 IA--------------------EDVLNKLKALHPLPGLILEWRRITN--AITKVVFPLQR 226 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-------------------- 331 + R+ Q A+ GR + QN+PR Sbjct: 227 EKRLNPFLGMERIYPVSQSHTAT--GRITFMEPNIQNVPRDFEIKMPILVGESPPSQALA 284 Query: 332 --------PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 R H D S +R + G ++ AD + Sbjct: 285 KGLLPVYGRGRGKRSCGPNSGHQAQVEERASDQGMPFSVSMRHAFVPFSGGLILAADYSQ 344 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 +E R+LA ++ ++ ++ TG D++ + A + P V D R K + + Y Sbjct: 345 LELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGM 404 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 GAK+ + + + S + +F R +N + +G Sbjct: 405 GAKSLGE-----QMGIKENDAACYIESFKSRYTGINHFMRETVKNCKRNGFVQTILGR-- 457 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 R+ +++ + + + D + K L + P Sbjct: 458 -------RRYLPGIND-----NNPYHKAHGKHSHGQYINDCDCIPIRPYLQKQELSQIWP 505 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 G V + R+ VQ + DI+ +N K Sbjct: 506 EGLPTSGPTVPSLN---------AERQAI------NTTVQGSAADIVKIATVNIQK 546 >gi|222435728|ref|YP_002564156.1| gp58 [Mycobacterium phage Phlyer] gi|222088281|gb|ACM42222.1| gp58 [Mycobacterium phage Phlyer] Length = 605 Score = 148 bits (373), Expect = 3e-33, Method: Composition-based stats. Identities = 119/717 (16%), Positives = 212/717 (29%), Gaps = 192/717 (26%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCV--ILFAFGFDDHPVELWDCVH-DPVMPQVLKE 59 T+ D ET G+ + + + FA+ +DD + + + Sbjct: 36 TIATDIET--------PGLDRA---FEINCVTFAWRWDDGSIHSVLLDPVGNTLHRQACI 84 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNL-----DIPIHRWICTLVLARSNGL----PSALK 110 L TI+ HN+ F+ L L +I I++ + TL+LAR + +L Sbjct: 85 DLYERAETIILHNAPFDIPAL-RHAGLFGTSPNIAINKVVDTLLLARFSLPDVTVSKSLT 143 Query: 111 AVG-EALKLSSQKME-------EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 A+ L LS K G + I +G + E R L E Sbjct: 144 ALSIRYLGLSDFKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVGAMADTIATLKLEPLL 203 Query: 163 GDVTVTREIFKRL-----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 + + + E + ++ + + +G VD + Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQEIVHRVMLRRTGKGLAVDHEYLTRYQEEK 263 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSSN 266 D ER + + L +GL + +K+ +L L + +L Sbjct: 264 DAERIQHEALLA--AHGLEGGAGKGKKIVEYLAEIGQLPADWPRTPTGGLKATKDLLDGF 321 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 A + + L + GR + LGAS TGR + + Sbjct: 322 DHPLTIAQRKLAEVDKVL----GYLTKVERQAAVTGRCHPQVGVLGASATGRMAYSMPEL 377 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 Q P+ +R +I +G+ L D + IE Sbjct: 378 QQFPKDARP--------------------------------IITDDGQGLTSIDWSQIEP 405 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 +A MAG+ L FE + RS + TK+ R I KV+ LA Y G Sbjct: 406 VTMANMAGDVGFLIPFEA-GEDLYEPIQRSCGLPM---TKEGRDIAKVVLLATMYGMGVN 461 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 A++ + +++ Sbjct: 462 GL--------------------------------------------ALKIKHTVESAQQI 477 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 ++ ++ + +Q ++ +GR Sbjct: 478 RRQMLAAMPESAKWMARVQGIADQ--------------------------YGRIITAAGR 511 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 L D G R VQ + D+LA ++ +AG L Sbjct: 512 ILPVDDGGVFR-------------------AVNYTVQGSAYDVLASTIVRMEEAGLGDHL 552 Query: 627 TV--HDEIVCETPDTDEFNASMLYHLMTSNPS----WAKGLP-LKAEGYESKR-YRK 675 + HDE++ +T A + +M + P WA +P L+ + + R + K Sbjct: 553 QLAMHDELIVDT-----EVADDVQQIMLTPPDFLIRWAGRVPVLRTDAADMGRAWAK 604 >gi|221108884|ref|XP_002170257.1| PREDICTED: similar to DNA polymerase theta, partial [Hydra magnipapillata] Length = 493 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 70/550 (12%), Positives = 142/550 (25%), Gaps = 112/550 (20%) Query: 154 WRLFGEYCKGDVTVTREIFK--RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 Y + + + + ++ E I G L +I+ Sbjct: 22 IEAVTVYHLME-EMELRLKREDLIKSFVDIEMPTIRTLLVIEINGIGFSDIECEKLKEIL 80 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 + + QE L+ V S + VL K Sbjct: 81 KGKLDSIQQECYKLSGS-VFSLSSPADVAR-------------------EVLEKLSKFHA 120 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCVFPPQN 328 + + + + + + S L+ F A + TGR + QN Sbjct: 121 LPKLIL-EWRKINSTLTKFVYPVQRRKRSSDVLQMHRIFTEAIYRTCTGRVTFSEPNLQN 179 Query: 329 LPR--------------------PSRSHEEL---DQIITHLPTSITSDPDPLQIISDCVR 365 +P+ + +L + + ++ + +R Sbjct: 180 VPKEFDIKLSSLVVKSPPHQITGNKKHKRQLVSSTRPLLSQQKDKHIGSSTTEMFTVSMR 239 Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 S + +V AD +E R++A M+ +Q +K D++ + A ++ VT Sbjct: 240 STFVPFSSGVMVAADYEQLELRIIAHMSQDQILIKTLNESGDVFKSIAAEINHINVVDVT 299 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 QR K + + Y G KA L + ++ + F + Sbjct: 300 TVQRQHAKQICYGIIYGIGIKALSHQ-----LGVEENDASEYMEKFKNRFKGVKRFIQNT 354 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 E + G +S+++ + + T G A K Sbjct: 355 IEEARANGFVKTLGGRKRYLP-----AINSKITNDKSHAERQAVNTTIQGSAADLVKI-- 407 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 +N +L +G Sbjct: 408 ---------------------------------AMNNIDIKL--NKIFGNSCFN------ 426 Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLK 664 + G +VL +HDE++ E + ++ M S +P+K Sbjct: 427 -----KLA-EKSQPKGAYLVLQIHDELLYEVNKENVDIVIKLIRREMESAIILTVKMPVK 480 Query: 665 AEGYESKRYR 674 + Sbjct: 481 V--KIGSSWG 488 >gi|194303251|ref|YP_002014665.1| gp54 [Mycobacterium phage Phaedrus] gi|194150983|gb|ACF34018.1| gp54 [Mycobacterium phage Phaedrus] Length = 605 Score = 147 bits (372), Expect = 4e-33, Method: Composition-based stats. Identities = 118/717 (16%), Positives = 212/717 (29%), Gaps = 192/717 (26%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCV--ILFAFGFDDHPVELWDCVH-DPVMPQVLKE 59 T+ D ET G+ + + + FA+ +DD + + + Sbjct: 36 TIATDIET--------PGLDRA---FEINCVTFAWRWDDGSIHSVLLDPVGNTLHRQACI 84 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNL-----DIPIHRWICTLVLARSNGL----PSALK 110 L TI+ HN+ F+ L L +I I++ + TL+LAR + +L Sbjct: 85 DLYERAETIILHNAPFDIPAL-RHAGLFGTSPNIAINKVVDTLLLARFSLPDVTVSKSLT 143 Query: 111 AVG-EALKLSSQKME-------EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 A+ L LS K G + I +G + E R L E Sbjct: 144 ALSIRYLGLSDFKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVGAMADTIATLKLEPLL 203 Query: 163 GDVTVTREIFKRL-----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 + + + E + ++ + + +G VD + Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQETVHRVMLRRTGKGLAVDHEYLTRYQEEK 263 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSSN 266 D ER + + L +GL + +K+ +L L + +L Sbjct: 264 DAERIQHEALLA--AHGLEGGAGKGKKIVEYLAEIGQLPADWPRTPTGGLKATKDLLDGF 321 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 A + + L + GR + LGAS TGR + + Sbjct: 322 DHPLTIAQRKLAEVDKVL----GYLTKVERQAAVTGRCHPQVGVLGASATGRMAYSMPEL 377 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 Q P+ +R +I +G+ L D + IE Sbjct: 378 QQFPKDARP--------------------------------IITDDGQGLTSIDWSQIEP 405 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 +A MAG+ L FE + RS + TK+ R I KV+ LA Y G Sbjct: 406 VTMANMAGDVGFLIPFEA-GEDLYEPIQRSCGLPM---TKEGRDIAKVVLLATMYGMGVN 461 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 A++ + +++ Sbjct: 462 GL--------------------------------------------ALKIKHTVESAQQI 477 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 ++ ++ + +Q ++ +GR Sbjct: 478 RRQMLAAMPESAKWMARVQGIADQ--------------------------YGRIITAAGR 511 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 L D G R VQ + D+LA ++ +AG L Sbjct: 512 ILPVDDGGVFR-------------------AVNYTVQGSAYDVLASTIVRMERAGLGDHL 552 Query: 627 TV--HDEIVCETPDTDEFNASMLYHLMTSNPS----WAKGLP-LKAEGYESKR-YRK 675 + HDE++ +T + + +M + P WA +P L+ + + R + K Sbjct: 553 QLAMHDELIVDT-----EVSDEVQQIMLTPPDFLIRWAGRVPVLRTDAADMGRAWAK 604 >gi|308497564|ref|XP_003110969.1| CRE-POLQ-1 protein [Caenorhabditis remanei] gi|308242849|gb|EFO86801.1| CRE-POLQ-1 protein [Caenorhabditis remanei] Length = 927 Score = 147 bits (372), Expect = 5e-33, Method: Composition-based stats. Identities = 65/486 (13%), Positives = 122/486 (25%), Gaps = 118/486 (24%) Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G D + ++ L++E+ L + ++ +F GL Sbjct: 534 MFYTGISFDHSKCNSFITNTRQRIELLEEEIWRL-AHGKFNIDSSNEVANVIFHRLGLIY 592 Query: 252 EDLTE--------TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 + + T + +L K ++ R L+ R Sbjct: 593 PETSSCKMKQRHLPTNKLILEQMKNQHKIVGKILEYRH----IQHTLTQCLLPLSIYSTR 648 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + + + TGR V QN+P+ + Sbjct: 649 IHC--RMEMCTATGRILTTVPNLQNVPKR------------------------VSTEGLS 682 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 R AS G+ L+ AD +E RVLA ++ + ++ DL+ Sbjct: 683 ARQLFKASSGRILISADFKQLELRVLAHLSNDSKLIELICADRDLFGELSVEWN------ 736 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 R + K + L Y G K ++ + S + + Sbjct: 737 ---FSRDVVKQLCYGLIYGMGPKTLAELTK-----VKVAEAEKMLCSFFSMFPGLYLYLS 788 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 G + Sbjct: 789 -------------------------------------------------NKGTYLYVTGV 799 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 R + + GR ++ R +Q Sbjct: 800 RSYINETKEHVSKEECVQTILGRKKFL-----KSGLTGEEKARVERVA------VNYTIQ 848 Query: 604 AVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA 658 + +I ++ G IVLT+HDE + E P+ S + M S+ S Sbjct: 849 GTASEIFKVAIVEIESKIKAYGARIVLTIHDEFLVECPENRTPVISEIIRDCMQSSLSDI 908 Query: 659 KGLPLK 664 +P+K Sbjct: 909 LRVPMK 914 >gi|331087492|ref|ZP_08336428.1| hypothetical protein HMPREF1025_00011 [Lachnospiraceae bacterium 3_1_46FAA] gi|330410472|gb|EGG89903.1| hypothetical protein HMPREF1025_00011 [Lachnospiraceae bacterium 3_1_46FAA] Length = 164 Score = 147 bits (371), Expect = 5e-33, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 6/133 (4%) Query: 4 LFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L ID ET S ++L K G+ +YAE D V+LF + D V++ D V +P+ + AL Sbjct: 23 LEIDIETFSSVNLAKAGVYRYAESPDFEVLLFGYSVDGGEVKVGDLVKGEKIPEEVMSAL 82 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGEALK 117 E+ VT A N+ FER + + + W C++V + GLP +L+ VG L Sbjct: 83 EDEAVTKWAFNAQFERICISRMLGYEAGTYLVPASWKCSMVWSAYMGLPLSLEGVGAVLG 142 Query: 118 LSSQKMEEGKELI 130 L QK+ EGK+LI Sbjct: 143 LEKQKLTEGKDLI 155 >gi|167933049|ref|ZP_02520136.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7b] Length = 190 Score = 147 bits (370), Expect = 8e-33, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 78/214 (36%), Gaps = 32/214 (14%) Query: 242 WLFLETGLHLE-----DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF++ L +T Q+ L+ + L P + R ++ ++ L + Sbjct: 1 MLFIKLQLPTTGIKKGKTGYSTGQKELNKLRGLHPVIELIEQTR-ELAKLKNTYVDALPK 59 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 ++ + RL T TGR S QN+P S Sbjct: 60 LVDKNYRLHTTFNQDVV-STGRLSSTHPNLQNIPIRS----------------------- 95 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 + +R+ IA E LV AD + E R+ A MAG++ + F D++ T + Sbjct: 96 --TLGKKIRNAFIADEDNILVSADYSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASDV 153 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 + + QVT +QR KV+ + Y Sbjct: 154 YKIPMDQVTSNQRRNAKVINFGVLYGMSPHGLSA 187 >gi|74221544|dbj|BAE21491.1| unnamed protein product [Mus musculus] Length = 822 Score = 146 bits (369), Expect = 9e-33, Method: Composition-based stats. Identities = 71/406 (17%), Positives = 138/406 (33%), Gaps = 59/406 (14%) Query: 67 TIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPS---ALKAVGEALK 117 +V N+ F RTVL + D V A + + + K Sbjct: 316 PVVCFNAKDFVRTVL-QLYGEDGSWKHVADFVGLDPRVAAWLIDPSDTAPSFEDL--VAK 372 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + + K + RN + L Y +T ++ +L+ Sbjct: 373 HLEKSIT---------VKPSSTFREASRNTLSQNVFMNLKILY-----DLTMDLCSKLKA 418 Query: 178 LSSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + L + + + VD + ++ +L+QE + Sbjct: 419 YGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAG-EQF 477 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE-----------TTCQRVLSSNKKLTPQAIQVFNNR 280 +L+ LF + LHL + +T + +L+S + L P + R Sbjct: 478 LIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYR 537 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + ++ L+ M G + T G + TGR S Q + + + Sbjct: 538 Q-VHKIKSTFIDGLLAYM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPW 594 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 ++T P R+ ++SEG + AD + IE R+LA ++G+ LK Sbjct: 595 NFKGKEEETVTISP----------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLK 644 Query: 401 AFE--TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 F+ +D++ T ++ ++ +VT R K + ++ Y G Sbjct: 645 LFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAG 690 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 43/150 (28%), Gaps = 22/150 (14%) Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 + R V + GR + Q R+ Sbjct: 670 VTHMDREQTKKVVYSVVYGAGYVTSILGRRRPLPRICAQDQ---QLRAQAERQA------ 720 Query: 598 TENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCETPDTDE-FNASMLYH 649 +VQ + D+ M+ + A +V +HDE++ E DT A+++ Sbjct: 721 VNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDELLFEVEDTQVPEFAALVRR 780 Query: 650 LMT-----SNPSWAKGLPLKAEGYESKRYR 674 +M +PLK + + Sbjct: 781 IMESLQQVQTLELQLQVPLKVNLSVGRSWG 810 >gi|225352868|ref|ZP_03743891.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156300|gb|EEG69869.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 244 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 52/331 (15%), Positives = 95/331 (28%), Gaps = 106/331 (32%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + SDGR+ T + A+ TGR S QN+P + E Sbjct: 4 TQPTSRSHRSDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNRDPAGRE------------ 50 Query: 351 TSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS + EG + L+ +D + +E R++A ++G++ ++AF +G D + Sbjct: 51 -------------IRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFH 97 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 + + V ++T DQR+ K M L Y + L Sbjct: 98 KYVASLVYGVPVDEITPDQRSHVKAMSYGLAYG-----LSTYGLSQQL------------ 140 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 E +K+ + +V E L + Sbjct: 141 ---------------------------GIKPGEAESLKRQYFATFGKVHEYLESLVSSAR 173 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + GR + + + + R Sbjct: 174 E--------------------------KGYTETIYGRRRYFPGLKSPNRAVRDA---AER 204 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 +Q + DI+ M+ A A Sbjct: 205 AALNAP------IQGSAADIMKIAMIRADDA 229 >gi|298528005|ref|ZP_07015409.1| DNA-directed DNA polymerase [Desulfonatronospira thiodismutans ASO3-1] gi|298511657|gb|EFI35559.1| DNA-directed DNA polymerase [Desulfonatronospira thiodismutans ASO3-1] Length = 914 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 82/595 (13%), Positives = 150/595 (25%), Gaps = 155/595 (26%) Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 K L + R + Y D VTR IF Sbjct: 411 YTKSLFKVLKKLPPEILDIPGSVARKVNYGDLPREILLPYAAMDAMVTRVIFTEQYRKME 470 Query: 181 KEQELWYLD------------------------QTINDRGYCVDVALAHTLNQIVDVERT 216 ++ + +G +D VD + Sbjct: 471 EDYTQIKRLEIAEKTTDLAKTLRFMTMPLAPKISEMEYQGIRIDREKLEDFIARVDAKIP 530 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN--KKLT 270 +L + S ++ S LK LF E T+ +T + + K Sbjct: 531 ELKDRIFSSIGRKINLSSSSGDLKRVLFKEKRYEPVKYTKTGDFSTDKNSMEVLYEKNED 590 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 + R + + DGRL +L G + + QN P Sbjct: 591 EFIRDLLILRR-VEKVRETYFINWRGEIEYDGRLHFSLNQHGTATYRLSANKG--LQNAP 647 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVL 389 L+ I V+S + E + D+A E RVL Sbjct: 648 ------------------------AYLKEIDLNVKSLFLPDSEEYDIFDLDIANAELRVL 683 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ----------VTKDQRAIGKVMELAL 439 + ++ ++AF G D++ T A+ + + R +GK + Sbjct: 684 CGYSKDETLIEAFNQGLDIHSLTAAKISDFTYEEIKAAKEDKTSEQHKLRQLGKKINFGT 743 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y GA + K Sbjct: 744 VYSMGATSLSKQLWAES--------------------------------------RIKVS 765 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 ++ + +++ +V E + Sbjct: 766 EDEAKQYLNKFFEEYPKVKEYMEKTRAFARAHR--------------------------F 799 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + +GR + +G + N + R+ +Q S DI+ +++ Sbjct: 800 VYTYTGRRRRFPMLGVD----NHQKFKAFRQAINCR------IQTTSADIVNTNLVDLDD 849 Query: 620 A----GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTS---------NPSWAKGL 661 A G ++LTVHD I+ + P +L ++T W + Sbjct: 850 AIKPLGGRVLLTVHDSILFQLPKDTAGVTELLDQVITENTKNKFPWLPVEWKYDV 904 >gi|297802740|ref|XP_002869254.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297315090|gb|EFH45513.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 2147 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 97/728 (13%), Positives = 192/728 (26%), Gaps = 162/728 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVL--KEALENT---------------------- 64 + A ++ PV + D + + ++ +E+ Sbjct: 1492 EIHGIAICWNSSPVYYVNLNKDLPNLECVEKQKLIEDAVVGKNEVLATHNMFDVIKSRWN 1551 Query: 65 DVTIVA---------HNSYFERTVLK---------ACFNL--DIPIHRWICTLVLARSNG 104 ++ + N + VLK NL I + + Sbjct: 1552 KISKIMGNVNTRKFTWNLKVQIQVLKSPAISIQRCNRLNLAEGIRDLELVD---GSWLMM 1608 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCK-----GETHECLYDRNKPNHREAWRL--- 156 P L+ S I + + + R P EA Sbjct: 1609 PP---------LRTSHTIDMSIVTWILWPDEERHSNPNIDKEVKKRLSPEAAEAANRSGR 1659 Query: 157 --------FGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYC 198 C V TR + L + + E L + + G Sbjct: 1660 WRNQIRRVAHNGCCRRVAQTRALCSALWKILVSEELLEALTTTEMPLVNVLADMELWGIG 1719 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE---DLT 255 VD+ I+ + L+++ L S + LF + L + Sbjct: 1720 VDIEGCLRARNILRDKLRSLEKKAFELAGMT-FSLHNPADIANVLFGQLKLPIPENQSKG 1778 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK--LNTLVEAMNSDGRLR-GTLQ 309 + +T + L + P + +R A + +L + S R Sbjct: 1779 KLHPSTDKHCLDLLRNEHPVVPIIKEHRTLAKLLNCTLGSICSLAKLRLSTQRYTLHGRW 1838 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 ++ TGR S Q++ E++ I+ + SD D +I + R + Sbjct: 1839 LQTSTATGRLSIEEPNLQSVEH------EVEFILDKNGKDVNSDADSYKINA---RDFFV 1889 Query: 370 A-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE-DLYVTTYARSFNVAPAQVTKD 427 E L+ AD + IE R++A + + + E D++ A+ A V+ Sbjct: 1890 PTQENWLLLTADYSQIELRLMAHFSRDSSLISQLRQPEGDVFTMIAAKWTGKAEGSVSPH 1949 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K + + Y GA + L ++ K S + ++ Sbjct: 1950 DRDQTKRLIYGILYGMGANRLAE-----QLECSSDEAKEKIRSFKSSFPAVTSWLNETIS 2004 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 E G K + + ++ + ++ G A K + Sbjct: 2005 FCQEKGYIQTLKGRRRFLSKIKFGNA-----KEKSKAQRQAVNSMCQGSAADIIKIAMIN 2059 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + + + R ++ R Sbjct: 2060 IYSAIAEDVDTT---------ASSSSSETRFHM-----LKGRCRI--------------- 2090 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 ++ E+V E + A+ML M + S +PL + Sbjct: 2091 ------LLQVHD-----------ELVLEVDPSYVKVAAMLLQTSMENAVSLL--VPLHVK 2131 Query: 667 GYESKRYR 674 K + Sbjct: 2132 LKVGKTWG 2139 >gi|258539931|ref|YP_003174430.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus Lc 705] gi|257151607|emb|CAR90579.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus Lc 705] Length = 191 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 61/224 (27%), Gaps = 44/224 (19%) Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + A NF + A + + +++ + Sbjct: 1 MKIFGLDSPDEVTPDMRRQAKATNFGIVYGISDYGLAQNIGISRKQAKAFIDGYFEQYPK 60 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + ++ E+G R + + Sbjct: 61 VHDYM---ENMVKKAREDGYVETL-----------------------FHRRRYLPQIHSR 94 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + R +Q + DI+ M+ KA ++L VHD Sbjct: 95 NF---NLRKFAERTAMNTP------IQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHD 145 Query: 631 EIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 E++ E P + L +M S S A +PLK E + + Sbjct: 146 ELIFEAPTAEMAQLGQLVPKIMDSAVSLA--VPLKVESHYGPTW 187 Score = 64.8 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 15/128 (11%), Positives = 34/128 (26%), Gaps = 10/128 (7%) Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 +P +VT D R K + Y + ++ + E++ Sbjct: 8 SPDEVTPDMRRQAKATNFGIVYGIS-----DYGLAQNIGISRKQAKAFIDGYFEQYPKVH 62 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 ++ M + E + R ++ + + + T G A Sbjct: 63 DYMENMVKKAREDGYVETLFHR--RRYLPQIHSRNFNLRKF---AERTAMNTPIQGSAAD 117 Query: 540 ARKRRDVP 547 K + Sbjct: 118 IIKVAMIR 125 >gi|320156437|ref|YP_004188816.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O] gi|319931749|gb|ADV86613.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O] Length = 684 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 103/771 (13%), Positives = 185/771 (23%), Gaps = 195/771 (25%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHP----VELWDCVHDPVMPQVLK 58 L D ET I+ + A D H + + + L Sbjct: 6 LCYDIETDGLIEDVT----------RIHCIAIINVDTHEEALYADYLVMMTKGTIKDGLD 55 Query: 59 EALENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARS--------------- 102 + + HN ++ V+K +++P + TLV AR Sbjct: 56 RLMR--AQLTLGHNIIKYDHPVIKKVTGVELPKDKSFDTLVAARLVFSNIKDIDQRNSGK 113 Query: 103 -----NGLPSALKAVGEALKLSSQKMEE--GKELIARFCKGETHECLYDRNKPNH-REAW 154 +L+A G L + KME + ++ Sbjct: 114 YTLGKLFGSHSLEAWGIRLG-GNLKMEYAPVIDPDQPVYDPTVKPKDAKKDPRWKGSIFT 172 Query: 155 RLFGEYCKGDVTVTREIFKRLEPL---------SSKEQELWYLDQTINDRGYCVDVALAH 205 + G+YC DV V ++F RLE E + ++ G+ D A Sbjct: 173 PMMGDYCMQDVRVNVDLFHRLERKAAELNYARSLKLEHDAAWVLAQQERNGFKFDEEKAI 232 Query: 206 TLNQIVDVERTKLDQELESLTY-----------------------------------GLV 230 L + R L EL + Sbjct: 233 KLLGRLAGRREFLYGELIRTFGGWWVSEGVVVPERTVNYKNPLTASRTQGAPFTKVKWVD 292 Query: 231 SSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + L + +L K + + + + Sbjct: 293 FNPSSRRHIIKVLTDRGWTPEEFTPSGEAKVDETILKDLKFPEAKLMAEWFLVQKRLGQL 352 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + ++ DG +RG++ GA TGR + +P Sbjct: 353 ADGNQAWLNTVHPDGFIRGSVNPNGA-VTGRATHSFPNVAQVPSCGAE------------ 399 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETG 405 R EG L+ +D +G+E R LA + K Sbjct: 400 ------------YGAECRELFTVPEGWWLLGSDASGLELRCLANFMARYDDGKYIDVVLN 447 Query: 406 EDLYVTTYAR-------SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 D++ + + ++ R K A Y GA+ G Sbjct: 448 GDIHWANAQAAGFIAKGTIRDPHNPIHEEARRKAKTFIYAFLYGCGAE---LTGQQVGWT 504 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + F R + E E V+K + + + Sbjct: 505 EEE---YLNWKAKGAHKPIINRFKRQGKPWTREKV----CNILKGEEVQKNFMKGLPALK 557 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 L + + N + GR + R + Sbjct: 558 NLIEICKEQHKT--------------------------NKYIEGIDGRRIYTRSEHAS-- 589 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYD-------I-VL 626 ++Q + ++ K AGY + Sbjct: 590 -------------------LNTLLQGAGALVCKAWIVEIEKLAIQAGYKHGADGDFMYCA 630 Query: 627 TVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLP--LKAEGYESKRYR 674 VHDE+ + L + SN L A+ K ++ Sbjct: 631 WVHDEVQIACRTKEIAEHIGQLCQVAMSNVEKEFNFICRLDADFQIGKSWK 681 >gi|90420964|ref|ZP_01228868.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] gi|90334742|gb|EAS48518.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] Length = 798 Score = 142 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 70/482 (14%), Positives = 136/482 (28%), Gaps = 93/482 (19%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVE-------LW--------DCVHDPVMPQVLKE 59 D G+ VIL F + + + +K Sbjct: 291 DAEGTGLVWCKGSTRVILNQFSYRPGESFMAPTHPLYYEKVFNDPNPGAKAEALQGQVKR 350 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL 116 LE+ V +AHN F+ V +++ T ++A + +L Sbjct: 351 FLEDERVRKLAHNLKFDHQVSAR-EGIEVR-GWLHDTQLMAFFADENMMSKSLDDCTRVW 408 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + K + + Y GD + +RL+ Sbjct: 409 VPEMAGYADNFNMAIDKSKMMDVPPDDILDADGKVVQYG-MRNYAGGDTDACLRLAQRLD 467 Query: 177 PLSSKEQELWYLDQTI------------NDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + ++ + + I G VD +L V E+ Sbjct: 468 KILREDPRQYQCYRRIQMPAIIAFAKVVERYGLSVDKEHLRSLADQVAQYTDAKYDEIVR 527 Query: 225 LTYG----------LVSSSRCLEKLKTWLFLE--TGLHLEDLTETT-------------C 259 L S ++ LF + GL + T++T Sbjct: 528 LIPPALRRDYLRRGEEISFTRDVVMRDILFGKKGFGLTPKVFTKSTAKLPPAQRVPSVST 587 Query: 260 QRVLSSNKKLTPQAIQVFN---NRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQF 310 + + + A + + ++ + + + + + DG + + + Sbjct: 588 KDHMPYFEDAPGNAGRFVTGYIDFLKQQKLITTYIGSEEKQSGFWQYIAPDGAIYPSYKL 647 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 A+ TGR + QN P+ R + + A Sbjct: 648 H-ATVTGRSASDNPNGQNFPKRGRFAKSYN-------------------------KVFKA 681 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 G KLV ADL+ IE R+ AWMA E L+ + D++ +T A + + + + Sbjct: 682 RPGYKLVSADLSQIELRIAAWMANEPEMLRIYRADGDIHASTGAATAGWTDEFFAQHKNS 741 Query: 431 IG 432 Sbjct: 742 DA 743 >gi|71897667|ref|ZP_00679912.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1] gi|71732570|gb|EAO34623.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1] Length = 169 Score = 142 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 91/168 (54%), Gaps = 11/168 (6%) Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-- 571 ++ W L A I + + + ++ + L L LPSGR L Y Sbjct: 6 FPAIAAFWQALQCAVTDAIGHPETA-----HTCCGIAVQYSRAWLRLRLPSGRVLYYAAP 60 Query: 572 --DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 D SY+ T TR+ TR TYGGKL ENI QAVSRD+LA M AGY IVLT Sbjct: 61 RVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYSIVLT 120 Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDEI+ E D FNA+ L LM + P WA+GLPL AEG+++ RYRK Sbjct: 121 VHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 168 >gi|229915743|ref|YP_002884389.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b] gi|229467172|gb|ACQ68944.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b] Length = 853 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 63/418 (15%), Positives = 116/418 (27%), Gaps = 124/418 (29%) Query: 281 MRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + + + + +N R+ + TGR + QN+PRP + Sbjct: 519 QKYTTLISSHIVGRQKYLNPFTDRIHAGYSSF--TDTGRLNSFKPNGQNVPRPDNDDFK- 575 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +RS GK L D +G E R++AW + ++ + Sbjct: 576 ------------------------IRSFFAPKPGKILFFIDFSGFELRLIAWKSNDEVMI 611 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 + F T D++ T + + +TK +R K + Y G A Q Sbjct: 612 ELFNTNGDMHRRTASALTGKPESDITKIERTNAKAGNFGIAYGGTEYALQ---------- 661 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + C + A + + R+ + Sbjct: 662 ----------------------------KTFKTDYGVRKTLDECAAIVNAVKTAYPRIPQ 693 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + QA ENG A G + RD+ S Sbjct: 694 MQR---QAILDARENGYAETIY-----------------------GYKRLLRDINGTNSK 727 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------------------- 620 L + + + +Q + DI+ + Sbjct: 728 LRGSDER---------RAGNTPIQGSAADIMKDCQNKVYDRIGEDTFKQRQGETDVLFTH 778 Query: 621 -GYDIVLTVHDEIVCETPDTD---EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 D++ +HDE++ E D E + + +M P +P+ AE K + Sbjct: 779 GSIDMIAQIHDEMIFEMDDDPALVEKAGAWIKAVMERPPLPDFPVPVIAEASVGKDWG 836 >gi|326567456|gb|EGE17571.1| DNA polymerase I [Moraxella catarrhalis BC1] Length = 835 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 73/582 (12%), Positives = 137/582 (23%), Gaps = 141/582 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L D ET + G Y+ AF + H + LK E+ Sbjct: 181 LACDIETTGL----ELGSELYS-------IAFAWSQHKGCAFKVTDK----VQLKRFFES 225 Query: 64 TDVTIVAHNSYFERTVLKAC-------------FNLDIPIHRWICTLVLARSNGLPSALK 110 ++ HN+ F+ + L T ++A + Sbjct: 226 YSGVLIFHNATFDIKHIIYHCFMDNPRDFKGMIHGLHTMCRNIEDTKIIAYL----ATNN 281 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 G L L KEL F + + N P EY D T Sbjct: 282 TQGNILGL--------KELSHEFVGNYAIDVKHVLNHP-----LATVLEYNLKDTLATYW 328 Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +F + +P + I G +++ + + + + + Sbjct: 329 VFNKYKPKMLSDNQDSIYKTIMLPSIKTIIQIELHGMPMNMDKVVIVKKQLQNQANDALE 388 Query: 221 ELE-------------------------------SLTYGLVSSSRCLEKLKTWLFLETGL 249 ++ L L L+ GL Sbjct: 389 QIYASEHVKAVTHELQTKELEKINSKLKTKQHTLDKVKDLQFKPNSTAHLAILLYDYLGL 448 Query: 250 H----LEDLTETTCQRVLSSNKKLTPQAIQV-----FNNRMRASRSAVLKLNTLVEAMNS 300 + + + T + + + + +A Sbjct: 449 PILDYTPNKQPAVGAGTIEKLIQHTQDDTIISLLTALLEYAKVQKILSTFIPAFEKAQQK 508 Query: 301 DGR--LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 D L G+ LG + + R S Q LP S + Sbjct: 509 DDWHYLHGSFN-LGGTLSNRLSSSNPNLQQLPSGSTYGKT-------------------- 547 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ-----WKLKAFETGEDLYVTTY 413 ++ C A + V AD +E R+ + + W Y Sbjct: 548 -----IKQCFQAPDDWLFVGADFNALEDRINTLLTKDPNKQKIWIDGYDAHCFRAYYYFA 602 Query: 414 ARSFNV--------APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 + ++ + + R K AL Y G Q + Sbjct: 603 NQMPDIINTKESINSIKHKYPELRQESKAPSFALQYGG-----QYFTLMKNCGFSESKAK 657 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + + +E ++ + + E + D+ G Sbjct: 658 EIETNYHKMYEVSDAWTQRKLEQCAKQGYIDVAFGLRIRTPV 699 >gi|262155784|ref|ZP_06028907.1| DNA polymerase [Vibrio cholerae INDRE 91/1] gi|262030375|gb|EEY49016.1| DNA polymerase [Vibrio cholerae INDRE 91/1] Length = 684 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 101/771 (13%), Positives = 184/771 (23%), Gaps = 195/771 (25%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFD-DHPVELWD---CVHDPVMPQVLK 58 L D ET I+ + A D D + + L Sbjct: 6 LCYDIETDGLIEDVT----------RIHCIAIINVDTHEEALYADYLVMMTKGTIKDGLD 55 Query: 59 EALENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARS--------------- 102 + + HN ++ V+K +++P + TLV AR Sbjct: 56 RLMR--AQLTLGHNIIKYDHPVIKKVTGVELPKDKSFDTLVAARLVFSNIQDIDQRNSGK 113 Query: 103 -----NGLPSALKAVGEALKLSSQKMEE--GKELIARFCKGETHECLYDRNKPNH-REAW 154 +L+A G L + KME + ++ Sbjct: 114 YTLGKLFGSHSLEAWGVRLG-GNLKMEYAPVIDPDQPVYDPTVKPKDAKKDPRWKGSIFT 172 Query: 155 RLFGEYCKGDVTVTREIFKRLEPL---------SSKEQELWYLDQTINDRGYCVDVALAH 205 + G+YC DV V ++F RLE E + ++ G+ D A Sbjct: 173 PMMGDYCMQDVRVNVDLFHRLERKVAELNYARSLKLEHDAAWVLAQQERNGFKFDEEKAI 232 Query: 206 TLNQIVDVERTKLDQELESLTY-----------------------------------GLV 230 L + R L EL + Sbjct: 233 KLLGRLAGRREFLYNELIRTFGGWWVSDGVVVPERTVNYKNPLTASRTQGAPFTKVKWVD 292 Query: 231 SSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + L + +L K + + + + Sbjct: 293 FNPSSRRHIIKVLTDRGWTPEEFTPSGEAKVDETILKDLKFPEAKLMAEWFLVQKRLGQL 352 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + ++ DG +RG++ GA TGR + +P Sbjct: 353 ADGNQAWLNTVHPDGFIRGSVNPNGA-VTGRATHSFPNVAQVPSCGAE------------ 399 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETG 405 R EG L+ +D +G+E R LA + K Sbjct: 400 ------------YGAECRELFTVPEGWWLLGSDASGLELRCLANFMARYDGGKYIDVVLN 447 Query: 406 EDLYVTTYAR-------SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 D++ + + ++ R K A Y GA+ G Sbjct: 448 GDIHWANAQAAGFIAKGTIRDPHNPIHEEARRKAKTFIYAFLYGCGAE---LTGQQVGWT 504 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + F R + E E V+K + + + Sbjct: 505 EEE---YLNWKAKGAHKPIINRFKRQGKPWTREKV----CNILKGEEVQKNFMKGLPALK 557 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 L + + + + GR + R + Sbjct: 558 NLIEICKEQHKTSK--------------------------YIEGIDGRRIYTRSEHAS-- 589 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYD-------I-VL 626 ++Q I ++ K GY + Sbjct: 590 -------------------LNTLLQGAGALICKAWIVEIEKLAIQSGYRHGADGDFMYCA 630 Query: 627 TVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLP--LKAEGYESKRYR 674 VHDE+ + +L + S+ L A+ K ++ Sbjct: 631 WVHDEVQIACRTKEIAEHIGLLCQVAMSHVEKEFNFICRLDADFQIGKSWK 681 >gi|29566249|ref|NP_817817.1| gp56 [Mycobacterium phage Rosebush] gi|29424974|gb|AAN01898.1| gp56 [Mycobacterium phage Rosebush] Length = 609 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 101/709 (14%), Positives = 182/709 (25%), Gaps = 194/709 (27%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVMPQVLKEALENTDVTIVA 70 D+ G+ + + + + L D + P ++ V Sbjct: 46 DIETPGLDR---NFEINCLTAAWIGWDGTIESVLLDPIRWPAHRAAARDVFARASKL-VF 101 Query: 71 HNSYFERTVLKACFNLDI-PIHRWICTLVLARSNGLP--------SALKAVGEAL----- 116 HN+ F+ L +D I + T++LAR L+A L Sbjct: 102 HNASFDVPPLWHHGLIDAGEIRKIADTVLLARFAYPDSYGPPLPRKTLEACAVHLLGLVD 161 Query: 117 ---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR---------------EAWRLFG 158 + G + I + + R W Sbjct: 162 VAGGMERAFKAAGFKTIQDGYENMNIDAPIYRQGAMADTVATLLLEPVLRRKCVEWTTSH 221 Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + + T E + ++ ++ + RG VD + +R + Sbjct: 222 PFAEFGATTEAE----ALEVLEVQEIAHWVMLQRSARGLAVDRDYLDEYREREHDKRLEH 277 Query: 219 DQEL--ESLTYGLVSSSRCLEKLKTWLFLETGLH-LEDLTETTCQRVLSSNKKLTPQAIQ 275 L L G ++ L+ L + + + L + P A Sbjct: 278 AAFLAQYDLEGGTGKGPALVKWLEARGELPSDWPRTPKGAPSAAKEHLETL--DHPVAAA 335 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 L + GR + LGAS TGR S Q P+ +R Sbjct: 336 QRALAQSDKVL--GYLEKVSRQAAVTGRCHPQVAILGASATGRMSYGSPELQQFPKDARP 393 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 +I +G+ L D A IE +A MAG+ Sbjct: 394 --------------------------------IIVDDGQGLTSVDWAQIEPVTMALMAGD 421 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L F + R+ + R + KV+ LA Y G Sbjct: 422 REFLAPFFENDADLYEPIMRACGID--------RPMAKVILLATMYGQG----------- 462 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 A + ++++ Sbjct: 463 ---------------------------------ARSMARRIGHTEESAAQIRRQMLAAMP 489 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + ++ + ++ GR L G+ Sbjct: 490 ASRDFMAKVESIAIT--------------------------HGRIVTGGGRILPVDQQGS 523 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV--HDEIV 633 R I Q + D+LA ++ +AG + + HDE+V Sbjct: 524 YR-------------------AVNYICQGSAYDVLAHTIVRLDEAGLSGHVQLAMHDELV 564 Query: 634 CETPDTDEFNASMLYHLMTSNPS----WAK--GLPLKAE-GYESKRYRK 675 +T A+ + H+M + P WAK L+ + R+ K Sbjct: 565 VDT-----DVAAEVEHIMMTPPEFLTRWAKRDDFMLRTDRADMGHRWAK 608 >gi|226377780|ref|YP_002790829.1| DNA polymerase [Lactobacillus phage Lb338-1] gi|225921558|gb|ACO37071.1| DNA polymerase [Lactobacillus phage Lb338-1] Length = 1046 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 85/655 (12%), Positives = 161/655 (24%), Gaps = 202/655 (30%) Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177 K + K + N + Y GD T + +L Sbjct: 438 YKDKVVKATMDLANIST-SNVFSGGNFSYEWIPMEIMYYYAAGDADATLRVHNKLLQLIR 496 Query: 178 -------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + +L + I + G VD A + + + +L+ ++ Sbjct: 497 EDPLNKDGRIEDLYLNFYPKLVHALACIQNHGMQVDDAYLTKITGLYADKAEELNNDIRK 556 Query: 225 LTYGLVSS----------------------------------------SRCLEKLKTWLF 244 L + + T L+ Sbjct: 557 LPAVKDFEEYQLGLYNEGVKEFAKPPKERDKTIFGYRAKFKDDKYKFSASRANDIATILY 616 Query: 245 LETGLHLE-----------DLTET----------TCQRVL--------SSNKKLTPQAIQ 275 G L + T + L + K T + Sbjct: 617 KNLGYALPYGKDFIKDTVWKKNKPEEQIIWSDYKTNKVALDYVNSQAKEAGDKDTEDLTK 676 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + ++ + ++L E + +L G +G + T R S QNLP Sbjct: 677 MLAKFSIVNKISSSFTDSLREYTDDTMKLHGHFSAVG-TETSRLSSSQINLQNLP----- 730 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394 L ++ ++ KL+ D + +E +LA + Sbjct: 731 --------------AEKSNTHLFNYKYPIKRMFVSRFPNGKLINLDYSSLEFHILALVTK 776 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 E AF G+D++ + A ++V V +QR K + L Y Sbjct: 777 EDSMTGAFLEGKDIHTSNAALMYDVPYEDVIVEQRKAAKSIGFGLIY------------- 823 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + A + + + + Sbjct: 824 -------------------------------GKGDAALAEDLGLSLEEAQEKINTFFKSK 852 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 RV + +A + NG R R++G Sbjct: 853 PRVKAF---IDKAHKFAENNGYVTTLNGFR--------------------------RNLG 883 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTV 628 S + R+ I+Q + ++ + I+ TV Sbjct: 884 GAFSTDYGKRSKAQRQS------VNTIIQGSGAILTNTAVIILNELLAKSKFKSVIIATV 937 Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSN-PSWAK--------GLPLKAEGYESKRY 673 HD I+ + P+ + S L ++M W P++AE K Y Sbjct: 938 HDSILIDCPEEEIDKVSTLALYVMEHLDYPWLFTNYKGKRIRYPIEAEVDIGKTY 992 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 23/186 (12%), Positives = 43/186 (23%), Gaps = 55/186 (29%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ----------- 55 D ET + K +I+ +F + + H + Sbjct: 204 DTETNTLKPNKKG--------AKIIVISFAWAEGKACAIPVGHCERYSETGTTLNGKPSY 255 Query: 56 ----VLKEALE--------------------------NTDVTIVAHNSYFERTV-LKACF 84 +KE + +T + V HN F+ L Sbjct: 256 FTKKDVKEIFDMLDDLTRAKTIGDIHPKVPVTMTLPKDTRLIKVGHNIAFDEHFMLATGH 315 Query: 85 NLDIPIHRWICTLVLARSNGL-----PSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 ++ + TL L + +L + +E K Sbjct: 316 AKELDFVNVVDTLTGHYLEISQDKKTSRHLSDLAFSLTSIGGYDKPLEEYKTWLVKLINK 375 Query: 140 ECLYDR 145 +Y R Sbjct: 376 AIMYVR 381 >gi|195500591|ref|XP_002097437.1| GE24491 [Drosophila yakuba] gi|194183538|gb|EDW97149.1| GE24491 [Drosophila yakuba] Length = 2043 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 94/666 (14%), Positives = 189/666 (28%), Gaps = 121/666 (18%) Query: 30 VILFAFGFDDHPVELWDCVHDPVM----------PQVLKEALENTDVTIVAHNSYFERTV 79 + +F D+ V + +D Q L + L D+TIV H+ + + Sbjct: 1471 IAGLSFCLADNVVYYMNMQNDDRATGQGVPTILKVQELCKLLARKDLTIVMHDGKEQLKI 1530 Query: 80 LKACFNLDIPI-HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138 L I + V + + E L G Sbjct: 1531 LLKAIPQLQKICAKLEDPKVANWLLQPDKTM----TFYNMCQTFAPECTALADLCGSGRG 1586 Query: 139 HECLYDRNKPNHREAWRLFGEYC------KGDVTVTREIF--KRLEPLSSKEQELWYLDQ 190 + R E C KG I + L+ E + Sbjct: 1587 YSSYGLDTSSAILPKIRASIEACVTVHILKGQTENLGRIGSGQLLKFFHDIEMPIQLTLC 1646 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G+ L Q + KL+ ++ + + + L L + Sbjct: 1647 HMEFVGFPAQQQRLQQLYQKMVAVMRKLETKIYEQHGSR-FNLGSSQTVAKVLGLHRKAN 1705 Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T ++VL +P + + R A A + L++ +D R Q Sbjct: 1706 GRVT---TSRQVLEKI--NSPISQLILGYRKVAGLLA-KSIQPLLKCCEAD---RIHGQS 1756 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 + + TGR S QN+ + + R + Sbjct: 1757 ITYTATGRISMTEPNLQNVAK------------------EFCIQVGSDALRIACRLPFVP 1798 Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 E + L+ AD +E R+LA M+ ++ L+ + +DL++ A + ++V++D R Sbjct: 1799 KDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIEESEVSQDLR 1858 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y G ++ + LN + + + + ++ + + + Sbjct: 1859 NSTKHVCYGIVYGMGMRSLAE-----SLNCSEQEARMISEQFHQAYKGIREYTSRVVKFA 1913 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + G R +S +L N+ + + G A K Sbjct: 1914 RNQGFVETITGR--RRYLD---NINSDEEQLKNQAERQAINSTIQGSAADIAK------- 1961 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 L + R +G+ D+ Sbjct: 1962 -----SAILKMEKNIERYRDKLVLGDQSV-----------------------------DL 1987 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGY 668 + + +HDE++ E P + + L M + +PLK + Sbjct: 1988 I---------------MHLHDELIFEVPAAKAKKIAKVLSLTMENCVK--LSVPLKVKLR 2030 Query: 669 ESKRYR 674 + + Sbjct: 2031 IGRSWG 2036 >gi|328873005|gb|EGG21372.1| DNA polymerase theta short isoform [Dictyostelium fasciculatum] Length = 989 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 79/647 (12%), Positives = 172/647 (26%), Gaps = 162/647 (25%) Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 K +EN + +N + +L + ++ + + V A Sbjct: 425 KIIMENPNSYKYLYNCRAQIKMLMS-MDIHVKKG-IMDPRVGAWLLDP------------ 470 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR--L 175 K L+ F + + D R + + TR F R Sbjct: 471 -DKYKDTTLDTLVREFSQDKKLSTNVDELNHYDRSFHHCYRSFVLMKQLFTRFHFNRDLY 529 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + + E L + + G D A V + ++ + + L S Sbjct: 530 KIFNEMEMPLLVILAKMEYNGIGFDDATCQNTKYEVLQKLQYIEVKARLMVPDLKFSMSS 589 Query: 236 LEKLKTWLFLET---GLHLEDLTE------TTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 E + L+ + + + +T +L + + ++ + S Sbjct: 590 KEDMSNILYNVLRVVDIPKANRGKIVKRHHSTKAAILEAVPEEKAAFPKMLIEWRKLSHH 649 Query: 287 AVLKLNTLVE--AMNSDG---RLRGTLQFLGASRTGRWSGCVFPPQ-------------- 327 + ++ L + N D R+ T+ TGR + Q Sbjct: 650 LLNYVHVLFKFGYYNPDYEMMRIYTTIMQTNVP-TGRLAMTYPNLQSIANAFTFRESPIS 708 Query: 328 ---------------------------NLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 N+ + I L T + + +I Sbjct: 709 FSDVSTNNVSKASSSASQHCSPPYDHHNVTVDYSPSPNESKSIGSLSTLELKEDNCR-LI 767 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY--ARSFN 418 + +R I +G + AD + IE R+LA ++ ++ L + + T + Sbjct: 768 TVRIRDSFIPRKGYLFLSADYSQIELRILAHLSEDKLLLDGLNNPDFDFFKTMFVQMNKG 827 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 VT ++R I K + G+ + A+ + + Sbjct: 828 TRIEDVTAEERDIAKELCY--------------GILYGMGTWSLANKLDRDE-------- 865 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 +K+ + + + + + + Sbjct: 866 ----------------------KEARILKEKLYNTYRDLIKYIDSVKK------------ 891 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 + + R +N + + R K Sbjct: 892 --------------RYHQVGYVETFYHRKRFL----DNNTRDKVEIEKEKR------KAV 927 Query: 599 ENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639 +I Q + DI+ + M++ K +VL +HDE++ E + Sbjct: 928 NSIPQGTAADIIKQAMISIDRIFEEQKTPALMVLQIHDELLFEVRED 974 >gi|294083961|ref|YP_003550718.1| DNA polymerase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663533|gb|ADE38634.1| DNA polymerase [Candidatus Puniceispirillum marinum IMCC1322] Length = 587 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 105/719 (14%), Positives = 192/719 (26%), Gaps = 182/719 (25%) Query: 1 MATLFIDFETRS-PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59 M ++ D E+ DLTK + A D P E W + +K+ Sbjct: 1 MRYVW-DLESNGFLEDLTK-----------IHCIAMMNADDPKETW-VFGPNDIKAGMKK 47 Query: 60 ALENTDVTIVAHNS-YFERTVLKA-CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 E T++ + HN + L N + + TLVL+R L Sbjct: 48 LAEATEI--IGHNILGHDVPALMKVYPNFSLDGVKLTDTLVLSRLITADLRNDDYERILS 105 Query: 118 LSS--QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + +K L A + ++ + E + +YC+ DV V ++K L Sbjct: 106 IDDFPRKYYGSHSLKAWGYRLGEYKGDFGEQTDWS-EWTQGMQDYCEQDVVVNYAVWKHL 164 Query: 176 EPL------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 +P E ++ + I G+ +V A L + E+ +L+ EL+ L Sbjct: 165 DPDSYSQRAIDFEHKMAEICHRIGKAGWHFNVEKAGILYGQLAGEKAQLESELKELFPPW 224 Query: 230 V-----------------------------SSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260 + + ++ L + T + Sbjct: 225 TKEEIFIPKRNNKTLGYVADEPFIKCKEITFNPNSRKHIQRCLMDKYDWKPRQFTYSGDA 284 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAV----LKLNTLVEAMNSDGRLRGTLQFLGASRT 316 ++ P R + + N + + L + GA T Sbjct: 285 KIDEGVLSRLPYPEAKKLARSFLLQKRIGMLAEGNNAWLRLV-EGNTLCHVINPNGA-VT 342 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR + F +P R EG L Sbjct: 343 GRATHFNFNTAQVP------------------------SVRAPYGKECRELFGVPEGYSL 378 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V +DL+G+E R LA + +Q K D+++ + K Sbjct: 379 VGSDLSGVELRCLANVLQDQGKYANIILNADIHLANMHSMGLTSRD--------QAKTAI 430 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y GG Sbjct: 431 YCMIYGGGDARL--------------------------------------------GEVV 446 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 ++ + + + ++L +L Q + Sbjct: 447 GKGAAEGRTLRNNFMKANPAFADLVRQLKQVVTK-------------------------- 480 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 L+ GR L R + L + L + TE Q + +I+A Sbjct: 481 RGHLVGLDGRKLAVRG-HAQLNVLLQSAAALLSKKWVELIDTEIATQGIDAEIIAW---- 535 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPS--WAKGLPLKAEGYESKRY 673 VHDE+ + DE N + M + +P+++E + + Sbjct: 536 -----------VHDEVQIKVRKGDEENVGHITGRMAEEAGKFFKFKIPIESEFNIGRNW 583 >gi|326573170|gb|EGE23139.1| DNA polymerase I [Moraxella catarrhalis CO72] Length = 835 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 73/582 (12%), Positives = 136/582 (23%), Gaps = 141/582 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L D ET + G Y+ AF + H + LK E+ Sbjct: 181 LACDIETTGL----ELGSELYS-------IAFAWSQHEGCAFKVTDK----VQLKRFFES 225 Query: 64 TDVTIVAHNSYFERTVLKAC-------------FNLDIPIHRWICTLVLARSNGLPSALK 110 ++ HN+ F+ + L T ++A + Sbjct: 226 YSGVLIFHNATFDIKHIIYHCFMDNPRDFKGMIHGLHTMCRNIEDTKIIAYL----ATNN 281 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 G L L KEL F + + N P EY D T Sbjct: 282 TQGNILGL--------KELSHEFVGNYAIDVKHVLNHP-----LATVLEYNLKDTLGTYW 328 Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +F + +P + I G +++ + + + + + Sbjct: 329 VFNKYKPKMLSDNQDSIYKTIMLPSIKTIIQIELHGMPMNMDKVVVVKKQLQNQANDALE 388 Query: 221 ELE-------------------------------SLTYGLVSSSRCLEKLKTWLFLETGL 249 ++ L + L L+ GL Sbjct: 389 QIYASEHVKAVTHELQTKELEKINSKLKTKQHTLDKVKDLQFKPNSIAHLAILLYDYLGL 448 Query: 250 H----LEDLTETTCQRVLSSNKKLTPQAIQV-----FNNRMRASRSAVLKLNTLVEAMNS 300 + + + T + + + + +A Sbjct: 449 PILDYTPNKQPAVGAGTIEKLIQHTQDDTIISLLTALLEYAKVQKILSTFIPAFEKAQQK 508 Query: 301 DGR--LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 D L G+ LG + + R S Q LP S Sbjct: 509 DDWHYLHGSFN-LGGTLSNRLSSSNPNLQQLPSGS------------------------- 542 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ-----WKLKAFETGEDLYVTTY 413 ++ C A + V AD +E R+ + + W Y Sbjct: 543 TFGKTIKQCFQAPDDWLFVGADFNALEDRINTLLTKDPNKQKIWIDGYDAHCFRAYYYFV 602 Query: 414 ARSFNV--------APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 + ++ + + R K AL Y G Q + Sbjct: 603 NQMPDIINTKESINSIKHKYPELRQESKAPSFALQYGG-----QYFTLMKNCGFSESKAK 657 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + + +E + + + E + D+ G Sbjct: 658 EIETNYHKMYEVSNAWTQRKLEQCAKQGYIDVAFGLRIRTPV 699 >gi|9964623|ref|NP_064753.1| RP DNA pol [Roseobacter phage SIO1] gi|9944314|gb|AAG02598.1|AF189021_17 RP DNA pol [Roseobacter phage SIO1] Length = 580 Score = 140 bits (352), Expect = 9e-31, Method: Composition-based stats. Identities = 68/532 (12%), Positives = 129/532 (24%), Gaps = 126/532 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD-DHPVELWDCVHDPVMPQVLKEAL 61 + D ET A D VI ++ K+ Sbjct: 2 EVVFDIETD-------------ALDATVIHVLVAKRVGQKGFYV-VRDAETFKRLAKQV- 46 Query: 62 ENTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALKAVGEAL 116 + HN F+ +K + IP+ TLV++R +L A+ Sbjct: 47 ----TLWIGHNVIGFDIPQIKKLWGYGIPLKDVADTLVMSRLLDPTRKGGHSLDALS--- 99 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + YCK DV + +++ +L+ Sbjct: 100 ------------------------GNEKIDFHDFSTYTPEMLAYCKQDVAINEKVYLQLK 135 Query: 177 PLS--------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT-- 226 E ++ + G+ +D +A + E +++ E++ Sbjct: 136 EELSNFGKASIQLEHQMQAIVCEQEKNGFMLDTDIAEEIYTTCLRETNRIEAEIKEFMVP 195 Query: 227 ------------------------------------YGLVSSSRCLEKLKTWLFLETGLH 250 + ++ L G Sbjct: 196 IAVPVKEVIIKRKKDGSIYSNQLLEGCNVQGDYTKIAWEEFNLGSPAQVNKRL-DRLGWK 254 Query: 251 LEDLTETTCQ-----RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 T++ L++ P+A++ + ++ GR+ Sbjct: 255 PTVKTKSGNSYKICPENLATIPDTAPEAVKGLKAWKVLE-TRWKLAQEWLQKSQETGRVH 313 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 G + GA T R + N+P + + + + R Sbjct: 314 GRVILTGA-VTHRAAHQGPNMANIPSVPHGKDGILWKME-------------GMYGAECR 359 Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 EGK LV D AGI+ RVLA + + + +FN Sbjct: 360 QAFKVPEGKLLVGTDAAGIQLRVLAHYMNDP-------IYTEQVIDGDIHTFNKEALGRY 412 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 R K A G + N + Sbjct: 413 CKDRPTAKTFIYAFLLGAGTGMIASILGCNNRQANEAMANFYEAIPSLKKLK 464 >gi|258539932|ref|YP_003174431.1| DNA polymerase I [Lactobacillus rhamnosus Lc 705] gi|257151608|emb|CAR90580.1| DNA polymerase I [Lactobacillus rhamnosus Lc 705] Length = 690 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 39/320 (12%), Positives = 100/320 (31%), Gaps = 24/320 (7%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + + L +++ + + R ++ A L +P L+ + +G+ Sbjct: 362 EVAKWLGDSNRDLTVFDGK--RNIVAAHRLGLHLPDIA-FDVLLASYLINPDENSNDLGK 418 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC----KGDVTVTRE 170 + + +L R P + + F +T + Sbjct: 419 I-----AEDHDYHDLPRDEDVYGKGA---KRQVPEDKLLFEQFARKSQALFALRPDLTED 470 Query: 171 IFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + K+ + + E+ + + +G ++ + L++++ Sbjct: 471 LAKQEQTDLFTDMEMPLARVLAEMEIQGITLNAQTLKDMGTEFSQSIKVLEEKIYGEAGV 530 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + L + T+ +T VL+ K +P + + R ++ Sbjct: 531 K-FNLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYR-GWAK 588 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + L++A D ++ ++TGR S QN+P + Sbjct: 589 LNSTYVVGLLKAQMPDHKIHTRYLQ-TLTQTGRLSSVDPNMQNIPARDEGKIIRKPLSLL 647 Query: 346 LPTSITSDPDPLQIISDCVR 365 + + + C R Sbjct: 648 IRIGRFLARNIRKSNYACYR 667 >gi|322502534|emb|CBZ37617.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 1257 Score = 139 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 52/372 (13%), Positives = 95/372 (25%), Gaps = 103/372 (27%) Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 L G + TGR S QNLPR + + + Sbjct: 957 TLHPNFLQEG-TDTGRLSCVEPNLQNLPRNGI----------AAAVAGNDAEEDGEEDLL 1005 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 R C +A+ G L+ D IE RVLA + G+ + A T D++ F P Sbjct: 1006 GFRRCFVATGGCVLLSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKKKP- 1064 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 V+ ++R++ K + + Y Sbjct: 1065 -VSTEERSLAKRVVFGVLYG---------------------------------------- 1083 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 A + + + + Sbjct: 1084 ----AGPKTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVIEEAR------------- 1126 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 N + SGR D+ + + R+ ++V Sbjct: 1127 -------------ANGFVRTLSGRLRYLPDIRSTVLSRRSY---AERQA------FNSVV 1164 Query: 603 QAVSRDILAEGMMNATKA--------GYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTS 653 Q + D++ M+ +K ++ +HDE+V ++ M+ Sbjct: 1165 QGSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMVFMVRKELLPMVVPLVSSAMSH 1224 Query: 654 NPSWAKGLPLKA 665 +PL Sbjct: 1225 AMQLL--VPLSV 1234 >gi|146098918|ref|XP_001468508.1| mitochondrial DNA polymerase I protein A [Leishmania infantum] gi|134072876|emb|CAM71592.1| putative mitochondrial DNA polymerase I protein A [Leishmania infantum JPCM5] Length = 1257 Score = 139 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 52/372 (13%), Positives = 95/372 (25%), Gaps = 103/372 (27%) Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 L G + TGR S QNLPR + + + Sbjct: 957 TLHPNFLQEG-TDTGRLSCVEPNLQNLPRNGI----------AAAVAGNDAEEDGEEDLL 1005 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 R C +A+ G L+ D IE RVLA + G+ + A T D++ F P Sbjct: 1006 GFRRCFVATGGCVLLSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKKKP- 1064 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 V+ ++R++ K + + Y Sbjct: 1065 -VSTEERSLAKRVVFGVLYG---------------------------------------- 1083 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 A + + + + Sbjct: 1084 ----AGPKTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVIEEAR------------- 1126 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 N + SGR D+ + + R+ ++V Sbjct: 1127 -------------ANGFVRTLSGRLRYLPDIRSTVLSRRSY---AERQA------FNSVV 1164 Query: 603 QAVSRDILAEGMMNATKA--------GYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTS 653 Q + D++ M+ +K ++ +HDE+V ++ M+ Sbjct: 1165 QGSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMVFMVRKELLPMVVPLVSSAMSH 1224 Query: 654 NPSWAKGLPLKA 665 +PL Sbjct: 1225 AMQLL--VPLSV 1234 >gi|313621758|gb|EFR92494.1| DNA polymerase [Listeria innocua FSL J1-023] Length = 155 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 14/161 (8%) Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVG 574 + + + I ++ + L + LPSGR+L Y G Sbjct: 1 RGVEKHAKLAISTRESQ------KYKGLTFYYKAGILFIKLPSGRNLAYFRAKLVPGKYG 54 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + Y T + ++YTYGGKL ENIVQA++RD LA + AG V+ VHDE + Sbjct: 55 HQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAVSLRRIEDAGISTVMHVHDEAIT 114 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E P+++ + L ++ SWA GLPL+ +G+ S Y K Sbjct: 115 EVPESE-SSVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 154 >gi|156552095|ref|XP_001605062.1| PREDICTED: similar to Mus308 [Nasonia vitripennis] Length = 2242 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 73/528 (13%), Positives = 152/528 (28%), Gaps = 66/528 (12%) Query: 21 ICKYAEDVCVILFAFGFDDHPVELWD--------CVHDPVMPQVLKEALENTDVTIVAHN 72 Y D + + V M L++ L + VT+ N Sbjct: 1742 AYVY-GDRKLCGIVISWGTKAVYYMPFGITTETKITIKERM-SFLRDILSDASVTLRCFN 1799 Query: 73 SYFE-RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA 131 + + + C ++ P ++ + K +L++Q G + IA Sbjct: 1800 AK-DVYKMFYICCEVE-PNCSFLDPKAGDWLMNAETCNKG---YTELAAQYFPRGID-IA 1853 Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLD 189 C+ + R A L Y V + F + E + Sbjct: 1854 NACENNYGTYVLTR--DARAGAKALLAWYVANAVVEAVKEFSPISLSAYKDIEMPTILIL 1911 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + RG+ ++V L ++ + ++++E + E + + G Sbjct: 1912 ANMELRGFGINVESLQELATVIKNDLGRIEEEAFRAAGRKFNFYSSKEVSQVLGLNKRGR 1971 Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 + ++ K + + + + L++ + R+ G Sbjct: 1972 ACTNK---------NALKSCENPISNLVTLWRKLTTVQTKIVFPLLQLERKNNRIHGNCI 2022 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 + TGR S Q +PR +S + VR + Sbjct: 2023 TY--TVTGRVSMHEPNLQTIPRDFKSD--------------------ISGCILSVRMAFV 2060 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 + G ++ AD +E R+LA + + K D++ + AR QV D R Sbjct: 2061 PASGNIMLSADFCQLELRILAHFSQDPVLCKLLHGKGDIFKSIAARLNKTTEEQVDDDMR 2120 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + A+ Y GAK+ + L+ + ++ + + E Sbjct: 2121 QRAKQLCYAMIYGMGAKSLAET-----LSATESEAKDYLEAFMGTYKGIRVWLTGVCEQA 2175 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 R+ ++ + + E+ N K Sbjct: 2176 RVEGFVSTIANR---------RRILPGINSKISAVKSQAERQAVNTKV 2214 >gi|158285510|ref|XP_564726.3| AGAP007533-PA [Anopheles gambiae str. PEST] gi|157020027|gb|EAL41770.3| AGAP007533-PA [Anopheles gambiae str. PEST] Length = 1997 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 88/709 (12%), Positives = 179/709 (25%), Gaps = 131/709 (18%) Query: 9 ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---VELWDCVHDPVMPQV------LKE 59 ETR + + +++ + A D V D + ++ Sbjct: 1370 ETRRTNNNASRS-FTFDDNLYLAGMAIKLQDDTTSTVYYIDLQEEATAIDRAEKVRFIRT 1428 Query: 60 ALENTDVTIVAHNSYFERTVLKA------CFNLDIPIHRWICTLVLARSN---GLPSALK 110 +TI + + ++ ++ + + V L Sbjct: 1429 LFGREQLTITMLDVKDQLKIVYRSGLIPVAEGDEVLVATFQDPRVACWLLQTDAETLTLD 1488 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A+ E + K E + R+ + R E C + Sbjct: 1489 AMIERH-CPTLKQAELRWTGQRWVTP-KWTGHGLNHHSPFDAKQRTAVE-CLLVSELMAC 1545 Query: 171 IFKR---------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + +R +S+E + + G+ VD L + R ++ +E Sbjct: 1546 VSQRLATANGDSLSICFTSREMPVQLALASAEVIGFPVDRERLAALIAQLKACRDRIAEE 1605 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 L + L L G + T ++VL + P A V R Sbjct: 1606 ARKLNGNQRLDFGSSRAVAKALRLAGG--NDRKQCRTVRQVLERLES--PLAALVIAYRK 1661 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S + L + G R + + TGR + Q + + D Sbjct: 1662 IESNLTRT-IEPLYRIVRP-GSNRVHGRSFCFTSTGRITMHEPNLQTVVK--------DF 1711 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVI---ASEGKKLVVADLAGIEARVLAWMAGEQWK 398 + T RS G L+ AD +E +L ++ + Sbjct: 1712 TVPARLTEGGGGGGDAPPPLFSCRSTFACSDPDGGTVLLSADFCQLELSILTHLSQDPQL 1771 Query: 399 LKA-----------FETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAK 446 + A E D++ AR + V+ + R K + + Y G + Sbjct: 1772 MAALGGGGNEAPGRTEARSDVFRALAARWNHYERESDVSDELRNRTKAIVYGVIYGMGVR 1831 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 A L L+ A + + + + + + G Sbjct: 1832 AMAAE-----LQLDEDAARTLMEQFHATYPEIRRYIERVVRLTRQLGYIETLTGR----- 1881 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 R+ ++ A E++ +A+ + + Sbjct: 1882 ----RRHLPAITS-----ENARERSEAERQAVCTTIQGSAADIL---------------- 1916 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 + R K VL Sbjct: 1917 -----------------KNAIVRMRRNLRKYRNV----------------LELERIRFVL 1943 Query: 627 TVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674 +HDE++ E P + + + M + +PL+ + + Sbjct: 1944 HMHDELIYEVPRSQLHKIAKILKSSMENCAK--LSVPLRVKLKAGPSWG 1990 >gi|159486913|ref|XP_001701481.1| DNA polymerase theta [Chlamydomonas reinhardtii] gi|158271663|gb|EDO97478.1| DNA polymerase theta [Chlamydomonas reinhardtii] Length = 2508 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 64/485 (13%), Positives = 121/485 (24%), Gaps = 98/485 (20%) Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK----------RLEPLSSKEQELWYLD 189 + R P + + R I+ L PL E L + Sbjct: 1955 AGVVVRQLPTRQAD-------ACRRAAMVRRIYIDKLPRLQSEGLLRPLLELEMPLVRIL 2007 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G + + ++ +L + L G+ + + LF L Sbjct: 2008 ARMEGEGIALAPQVLKDQRGPLEARLRQLAAKAH-LAAGMTFDLNSPKDVSEVLFQHLNL 2066 Query: 250 HLE--------DLTETT--CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE--- 296 +T P + + R + + TL Sbjct: 2067 PPPPCAFSNQNQRHPSTKKEVLEELEESTHHPIIRLLLDYR-TLHKLLTGFVETLYHTAK 2125 Query: 297 -----------------------------AMNSDG--------RLRGTLQFLGASRTGRW 319 A+ G RL GT ++ TGR Sbjct: 2126 GQWQRQQHELERCQGQGQQPQRGGAATGGAVKPGGPGPVPDVIRLCGT-WLHTSTATGRL 2184 Query: 320 SGCVFPPQNLPRP---------------------SRSHEELDQIITHLPTSITSDPDPLQ 358 + Q +PRP EL + + Sbjct: 2185 AMDEPNLQTVPRPVEYTFMASQLSQASAGTPPAAGADGAELKLLPGEERGGGAGEGGRSV 2244 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-EDLYVTTYARSF 417 + +RS +A G ++ AD IE R++A + + +D ++ A Sbjct: 2245 TLHFNLRSAFVAPPGYMVLAADYKQIELRLMAHFSSDAALCALLRNPAQDPFILLAAEWK 2304 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 V QVT + R K + + Y G + L ++ +++ Sbjct: 2305 KVPVEQVTPEVRVQAKRLAYGMLYGMGTNTLAQE-----LGVSVAEAGELSDNFRRAIPS 2359 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 + + R + E +G + + + + T+ G A Sbjct: 2360 VDRWMREVVEAVRSCGYTTTLMGRR-RYYSRINERASKDARSARAQAERQAVNTVCQGSA 2418 Query: 538 IIARK 542 K Sbjct: 2419 ADLIK 2423 >gi|256081122|ref|XP_002576822.1| DNA polymerase I [Schistosoma mansoni] gi|238662107|emb|CAZ33059.1| DNA polymerase I, putative [Schistosoma mansoni] Length = 787 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 69/549 (12%), Positives = 144/549 (26%), Gaps = 117/549 (21%) Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 L + G+ +++ + + + +L+ L +++ Sbjct: 290 LPCQSLLARMESNGFILNLDDLNKCHDSLLKACKQLESVAYRLAGQP-FPMDSPKEISKV 348 Query: 243 LFLETGLHLED-------------------------LTETTCQRVLSSNKKLTPQAIQVF 277 LF L L + T +LS L P + Sbjct: 349 LFKWLHLPQITDPNDLIMNRKRSQSYLLNGRNRSNHLPKATNT-LLSKLTNLHPLPAVIM 407 Query: 278 NNRMR---ASRSAVLKLNT---LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 R + ++T + + D LR + + + TGR + Q++P+ Sbjct: 408 EWRHINGILEKIFNSLVSTCRLIYISSTGDQPLRISPTYDVYTATGRIISIMPNLQSVPK 467 Query: 332 P-------------SRSHEELDQIITHLPTSITSDPDPLQIISDCVRS--CVIASEGKKL 376 + + L+ + L + +R A G L Sbjct: 468 DIVIDWSKLHYKSSTVDNNCLNNNSEKWTSPFDQILSELPKSIETIRPRCAFHAPVGGLL 527 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD-QRAIGKVM 435 + D +E R+LA+ + + LK E T A N+ + D QR K + Sbjct: 528 ISGDFCQLELRLLAYFSKDVELLKLLSVVEHASQTLAAHWLNIPHSNQVTDVQRQQAKQL 587 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 A+ A + Sbjct: 588 CYAIL--------------------------------------------YGMGSQTLASQ 603 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 +++ ++ + V + A G+ + V K Sbjct: 604 LNVSQQNAQKLIDSFLNTYPGVQKFIKT---AVLTAHREGQIKTLNGHIRLLPVLNSKTV 660 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + ++ N S G + I+Q + +I M+ Sbjct: 661 FDSGTPY---------ELNCNWSKKYDLRNHFAVIKAEG-QAVNIIIQGSASEIAKIAML 710 Query: 616 NATKA--------GYDIVLTVHDEIVCET-PDTDEFNA-SMLYHLMTSNPSWAK-GLPLK 664 +A +VL HDE++ E P++ ++ M++ +PL Sbjct: 711 AVDEAIHSSNIPGNAHLVLHEHDELIYEVFPESSAKQFGELIRQTMSNTSKHCNIDVPLP 770 Query: 665 AEGYESKRY 673 + + Sbjct: 771 VKLRIGNNW 779 >gi|157875680|ref|XP_001686222.1| mitochondrial DNA polymerase I protein A [Leishmania major strain Friedlin] gi|24620482|gb|AAN61165.1| DNA polymerase I type A [Leishmania major] gi|68129296|emb|CAJ07836.1| putative mitochondrial DNA polymerase I protein A [Leishmania major strain Friedlin] Length = 931 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 52/372 (13%), Positives = 95/372 (25%), Gaps = 103/372 (27%) Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 L G + TGR S QNLPR + + + Sbjct: 631 TLHPNFLQEG-TDTGRLSCVEPNLQNLPRNGI----------TAAVAGNDAEEDGEEDLL 679 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 R C +A++G L+ D IE RVLA + G+ ++A T D++ F P Sbjct: 680 GFRRCFVATDGCVLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKKKP- 738 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 V+ ++R + K + L Sbjct: 739 -VSTEERRLAKRVVFGLL------------------------------------------ 755 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 A + + + + Sbjct: 756 --YGAGPKTLATHMGVTVDRALHITSLLANAFPGIDAYQRRVIEEART------------ 801 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 N + SGR D+ + + R+ ++V Sbjct: 802 --------------NGFVRTLSGRLRYLPDIRSTVLSRRSY---AERQA------FNSVV 838 Query: 603 QAVSRDILAEGMMNATKA--------GYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTS 653 Q + D++ M+ +K ++ +HDE+V ++ M+ Sbjct: 839 QGSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMVFMVRKELLPMVVPLVSSAMSH 898 Query: 654 NPSWAKGLPLKA 665 +PL Sbjct: 899 AMQLL--VPLSV 908 >gi|157325093|ref|YP_001468518.1| gp138 [Listeria phage A511] gi|66733101|gb|AAY52919.1| gp138 [Listeria phage A511] Length = 730 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 83/620 (13%), Positives = 151/620 (24%), Gaps = 191/620 (30%) Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW-----------YLDQTIND 194 N + Y GD I L + +K Q++W I Sbjct: 148 NFNYDWIPLEILHPYASGDTDCCLRIHNVLTEIIAKNQKMWFQFANFYPSAIVALARIES 207 Query: 195 RGYCVDVALAHTLNQIVD-------------VERTKLDQELESLTYGLV----------- 230 G +N+ E ++L+++ L V Sbjct: 208 NGIYAQTDYMEDINEKYTEEEERLVEEMRKIAEVSELEEQHMELYERGVEEMAVPPAKRD 267 Query: 231 ---------------SSSRCLEKLKTWLFLETGLHLE------------------DLT-- 255 + L+ G+ L LT Sbjct: 268 DDIAKLRNKYKNKLKFNPNSATDKGKVLYQIMGITLPYDKEHIKESAFDVGKPENKLTWE 327 Query: 256 -ETTCQRVLSSNKKLTPQ---AIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQF 310 T ++ L+ P + L+ + N DGR+ G+ Sbjct: 328 DYKTDKKALNYIVDHFPDQKVFASLLLEHSLVKTRKNNFTAKLLNFISNKDGRVHGSFN- 386 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV-I 369 + T R S Q LP + + + D ++ Sbjct: 387 ATGTETTRLSSNNPNMQQLPAKTSNPKRFDYQY-------------------PIKRMFQT 427 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 A E L+ D + +E R+LA AG++ +AF G DL+ T + + + +V + Sbjct: 428 AFENGALLQLDYSSLEMRILALAAGDEAMTQAFFDGADLHKETASIVWGMPVDKVPAE-- 485 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 + A NF E Sbjct: 486 ------------------------------------------FRKKAKAVNFGIAYGETP 503 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 A + E + + + + + + + + +G + R + Sbjct: 504 FSFAPKHDMSVEEAEDIFQRYFANKPNIKTF---IDETHREALRDGFVDTLQGHRRLIRD 560 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 KDK L K +Q Sbjct: 561 AFSKDKQIQNGAL--------------------------------RKSVNTKIQGTGAYC 588 Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNP------S 656 ++ +VLTVHD IV + P + + + +M + P Sbjct: 589 TNMSLIYIDQYIQDNNMKSKLVLTVHDSIVVDCPPEEIEIMARVCKTIMENLPIDFLSIE 648 Query: 657 WAKG---LPLKAEGYESKRY 673 W P++A+ Y Sbjct: 649 WKGEKTKYPIEADIEIGTNY 668 >gi|291335358|gb|ADD94973.1| DNA polymerase I putative [uncultured phage MedDCM-OCT-S04-C148] Length = 640 Score = 138 bits (347), Expect = 4e-30, Method: Composition-based stats. Identities = 93/593 (15%), Positives = 156/593 (26%), Gaps = 159/593 (26%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHPVELWDCVH-DPVMPQVLKEAL 61 L D ET E + L D + L DC D L+ Sbjct: 21 LCFDTETLQLQP----------ERGKLRLLQLGARDRDTIVLIDCFQLDKGDWADLRWFF 70 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSN-----GLPSALKAVGEA 115 D +AHN+ F+ L+ +I W C+++ +R L +V + Sbjct: 71 STPDRFWLAHNAVFDLGWLQEH---NIYPAGWVRCSMLASRLLTNGLPNSKHGLDSVVKR 127 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI---- 171 + + + EY DV E+ Sbjct: 128 YL-------------------KKELSKEQQRSDWSGDLSEEQLEYAANDVAALMELDPIL 168 Query: 172 --------------------------FKRLEPLSSKEQEL------WYLDQTINDRGYCV 199 ++ P +++ + + + Q D + Sbjct: 169 EHRISRDRLGPAFKLECRALPAMAQMWRTGLPWNAENLQQRKVDYEYDITQLKQDFLMLL 228 Query: 200 DVALAHTLN---QIVDVER-----------------TKLDQELESLTYGLVSSSRC---- 235 D AL + + K ELESL ++R Sbjct: 229 DKALPEEHKLPRERDEQRISYLKDKVTEMGHYDKAYEKWYAELESLENSTTFNTRSKDEG 288 Query: 236 ----------------LEKLKTWLFLETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVF 277 ++L L + G + + ++ L S Sbjct: 289 SIRLGTKKYAGFNINSPKQLVEKLTVILGEPPRDANGKPSASRQALRSYAADHEVIQIYL 348 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + R + ++ E M+ G +R + LGA GR S Q +PR Sbjct: 349 EWKRCEKRRQ--MIESIQEKMDGTGFVRASYMQLGAES-GRMSCIKPNNQQIPRD----- 400 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSCV A EG LV AD +E R+ A +A ++ Sbjct: 401 ------------------------KQFRSCVEAPEGWLLVDADFGQMELRLAAAVADDER 436 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + AF+ GED + T R K L Y GA + A G+ Sbjct: 437 MIAAFQAGEDPHTVTAKAI---------GCDRQTAKSANFGLLYGSGATGLRNYAGGMGI 487 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 + N ++ + R + E + + Sbjct: 488 TMTQERAADIRNEWLGVFQGVAKWQRDNAKEADETQDYKWAATRVPISGMRRY 540 >gi|66732781|gb|AAY53372.1| gp69 [Listeria phage P100] Length = 702 Score = 137 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 83/620 (13%), Positives = 150/620 (24%), Gaps = 191/620 (30%) Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW-----------YLDQTIND 194 N + Y GD I L + +K Q++W I Sbjct: 120 NFNYDWIPLEILHPYASGDTDCCLRIHNVLTEIIAKNQKMWFQFANFYPSAIVALARIES 179 Query: 195 RGYCVDVALAHTLNQIVD-------------VERTKLDQELESLTYGLV----------- 230 G +N+ E ++L+++ L V Sbjct: 180 NGIYAQTDYMEDINEKYTEEEERLVEEMRKIAEVSELEEQHMELYERGVEEMAIPPAKRD 239 Query: 231 ---------------SSSRCLEKLKTWLFLETGLHLE------------------DLT-- 255 + L+ G+ L LT Sbjct: 240 KDIAKLRDKYKKKLKFNPNSATDKGKVLYQIMGITLPYDKEHIKESAFDVGKPENKLTWE 299 Query: 256 -ETTCQRVLSSNKKLTPQ---AIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQF 310 T ++ L+ P + L+ + N DGR+ G+ Sbjct: 300 DYKTDKKALNYIVDHFPDQKAFASLLLEHSLVKTRKNNFTAKLLNFISNKDGRVHGSFN- 358 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV-I 369 + T R S Q LP + + D ++ Sbjct: 359 ATGTETTRLSSNNPNMQQLPAKTSDPKRFDYQY-------------------PIKRMFQT 399 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 A E L+ D + +E R+LA AG++ +AF G DL+ T + + + +V + Sbjct: 400 AFENGALLQLDYSSLEMRILALAAGDEAMTQAFFDGADLHKETASIVWGMPVDKVPAE-- 457 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 + A NF E Sbjct: 458 ------------------------------------------FRKKAKAVNFGIAYGETP 475 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 A + E + + + + + + + + +G + R + Sbjct: 476 FSFAPKHDMSVEEAEDIFQRYFANKPNIKTF---IDETHREALRDGFVDTLQGHRRLIRD 532 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 KDK L K +Q Sbjct: 533 AFSKDKQIQNGAL--------------------------------RKSVNTKIQGTGAYC 560 Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNP------S 656 ++ +VLTVHD IV + P + + + +M + P Sbjct: 561 TNMSLIYIDQYIQDNNMKSKLVLTVHDSIVVDCPPEEVEIMARVCKTIMENLPIDFLSIE 620 Query: 657 WAKG---LPLKAEGYESKRY 673 W P++A+ Y Sbjct: 621 WKGEKTKYPIEADIEIGTNY 640 >gi|322494966|emb|CBZ30269.1| mitochondrial DNA polymerase I protein A,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 930 Score = 137 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 52/372 (13%), Positives = 95/372 (25%), Gaps = 103/372 (27%) Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 L G + TGR S QNLPR + + Sbjct: 630 TLHPNFLQEG-TDTGRLSCVEPNLQNLPRNGI----------TAAVAGNDAEEDGDDDLL 678 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 R C +A+ G L+ D IE RVLA + G+ ++A T D++ F P Sbjct: 679 GFRRCFVAAGGCVLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKKKP- 737 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 V+ ++R++ K + + Y Sbjct: 738 -VSTEERSLAKRVVFGVLY----------------------------------------- 755 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 A + + + + Sbjct: 756 ---GAGPKTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVVEEAR------------- 799 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 N + SGR D+ + + R+ ++V Sbjct: 800 -------------ANGFVRTLSGRLRYLPDIRSTVLSRRSY---AERQA------FNSVV 837 Query: 603 QAVSRDILAEGMMNATKA--------GYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTS 653 Q + D++ M+ +K ++ +HDE+V ++ M+ Sbjct: 838 QGSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMVFMVRKELLPMVVPLVSSAMSH 897 Query: 654 NPSWAKGLPLKA 665 +PL Sbjct: 898 AMQLL--VPLSV 907 >gi|109521836|ref|YP_655732.1| gp52 [Mycobacterium phage Qyrzula] gi|91980780|gb|ABE67498.1| gp52 [Mycobacterium phage Qyrzula] Length = 600 Score = 137 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 101/714 (14%), Positives = 183/714 (25%), Gaps = 204/714 (28%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVEL---------WDCVHDPVMPQVLKEALENTD 65 D+ G+ + + + + + W H V A Sbjct: 37 DIETPGLDR---NFEINCLTAAWIGWDGTIESVLLDPIRWP-AHRQAARDVFARAC---- 88 Query: 66 VTIVAHNSYFERTVLKACFNLDI-PIHRWICTLVLARSNGLP--------SALKAVGEAL 116 +V HN+ F+ L +D I + T++LAR L+A L Sbjct: 89 -KLVFHNASFDVPPLWHHGLIDAGEIRKIADTVLLARFAYPDSYGPPLPRKTLEACAVHL 147 Query: 117 --------KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR---------------EA 153 + G + I + + R Sbjct: 148 LGLVDVAGGMERAFKAAGFKTIQDGYENMNIDAPIYRQGAMADTVATLLLEPVLRRKCVE 207 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 W + + T E + ++ ++ + RG VD + Sbjct: 208 WTTSHPFAEFGATTEAE----ALEVLEVQEIAHWVMLQRSARGLAVDRDYLDEYREREHD 263 Query: 214 ERTKLDQEL--ESLTYGLVSSSRCLEKLKTWLFLETGLH-LEDLTETTCQRVLSSNKKLT 270 +R + L L G ++ L+ L + + + L + Sbjct: 264 KRLEHAAFLAQYDLEGGTGKGPALVKWLEARGELPSDWPRTPKGAPSAAKEHLETLDHPV 323 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 A + S + L + GR + LGAS TGR S Q P Sbjct: 324 AAAQRAL----AVSDKVLGYLEKVARQAAVTGRCHPQVAILGASATGRMSYGSPELQQFP 379 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 + +R +I +G+ L D A IE +A Sbjct: 380 KDARP--------------------------------IIVDDGQGLTSVDWAQIEPVTMA 407 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 MAG++ L F + R+ + R + KV+ LA Y G Sbjct: 408 LMAGDREFLAPFFEKDADLYEPIMRACGID--------RPMAKVILLATMYGQG------ 453 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 A + ++++ Sbjct: 454 --------------------------------------ARSMARRIGHTEESAAQIRRQM 475 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + ++ + ++ GR L Sbjct: 476 LAAMPASRDFMAKVESIAIT--------------------------HGRIVTGGGRILPV 509 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV-- 628 G+ R I Q + D+LA ++ + G + + Sbjct: 510 DQQGSYR-------------------AVNYICQGSAYDVLAHTIVRLDEVGLSGHVQLAM 550 Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPS----WAK--GLPLKAE-GYESKRYRK 675 HDE+V +T A+ + H+M + P WAK L+ + R+ K Sbjct: 551 HDELVVDT-----DVAAEVEHIMMTPPEFLTRWAKRDDFMLRTDRADMGHRWAK 599 >gi|326919514|ref|XP_003206025.1| PREDICTED: HAUS augmin-like complex subunit 3-like [Meleagris gallopavo] Length = 1077 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 54/407 (13%), Positives = 112/407 (27%), Gaps = 108/407 (26%) Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + + ++ + + TGR S Q + + ++ I Sbjct: 756 LQKLYTI----MMGLAHDLQGFICPTWNQTGTVTGRLSSKHPNIQGISKHPVRIKKKQYI 811 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +T P R+ ++ +G + AD + IE R+LA ++ E LK F Sbjct: 812 KGKEEEIVTISP----------RALFVSKKGYTFLAADFSQIELRILADLSAEPELLKLF 861 Query: 403 ETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 + E D++ + ++ + QV + R K + Sbjct: 862 QEPETADIFTSLASQWKGIPSEQVKQTDREQAKRIV------------------------ 897 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + A +++ QK+ +V E Sbjct: 898 --------------------YSVVYGAGKERLAECLGITPLEASCFIESFMQKYKKVHEF 937 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + Q G + GR + ++ + L Sbjct: 938 ---TKKTIGQCQNKGYVVSI-----------------------MGRKRLLANIHSQDYKL 971 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIV 633 T Q R+ +VQ + D+ M+ ++ +HDE++ Sbjct: 972 RT---QAERQA------VNFVVQGSAADLCKMAMVEIFTSVVVSPTLTARLIAQIHDELL 1022 Query: 634 CETPDTDEFNA-SMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674 E D+ +++ M + +PLK K + Sbjct: 1023 FEVEDSQIQEFSALVKRTMESLQQTTALEVPLKVPLKVLLTTGKSWG 1069 >gi|291165127|gb|ADD81154.1| gp49 [Rhodococcus phage ReqiPine5] Length = 600 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 103/688 (14%), Positives = 187/688 (27%), Gaps = 188/688 (27%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPV----ELWDCVHDPVMPQVLKEALENTDVTIVA 70 D+ GI + F + L D P K + + V Sbjct: 40 DIETKGIDI----FTIRCITFSWHGSDGRTHGILLDMGRRPEDLAEAKRIAQRAEHL-VF 94 Query: 71 HNSYFERTVLKACFNL--DIPIHRWICTLVLARSNGL----PSALKAVGEALKLSSQKME 124 HNS F+ L F + + R T+VL+R P L+A+ +++S + + Sbjct: 95 HNSPFDVVPLV-HFGVMGREEVFRVWDTIVLSRMAFPDVMVPKKLEAMAVKMRVSDELPD 153 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI--------FKRLE 176 K +I D + + D VT + ++L Sbjct: 154 GLKMMIKASGLKSK-----DGWYAHGDIDRPAYRHGAIADTVVTLRLLPVLIDAIHRKLT 208 Query: 177 PLSSKEQ-----ELWYLDQTIND-----------RGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ + RG VD+ HT V + + + Sbjct: 209 DHPFTDRGLQTTDEAQALVDREMLVNRVMLWRSARGIRVDLDYMHTYRDSVADKVARAEL 268 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNN 279 EL++ + ++ + KL L + + + + P A + Sbjct: 269 ELKNYGVDPGNGAQLVAKLDEVGGLPENWPRTATGKLASNKDAMEKL-GDHPLA---LAH 324 Query: 280 RMRASRSAV-LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R+ A + + L+ + GR ++ LGAS TGR S P Q Sbjct: 325 RIYADETKIGQYLDAVASRAEVTGRCHPSVAILGASATGRTSYSDPPLQQF--------- 375 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 S R ++ +G+ L+ D + IE V+A MAG+ Sbjct: 376 ----------------------SADARPVLV-DDGQGLMSVDWSAIEPVVVANMAGD--- 409 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 E + GA ++ + G++ Sbjct: 410 ------------------------------------QEFLAPFVAGADLYEPIQRAAGID 433 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + E + A + ++++ +V Sbjct: 434 --------------RKRAKVVLLGTLYGEGKGKMAADLKCSYEQAVQIQRGMFSAMPKVE 479 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + Q I++ GR L + Sbjct: 480 RFLETVKSVAAQ--------------------------FGIIVTADGRILDVPKFNGEVA 513 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCET 636 K T I Q + + A+ ++ AG +I L +HDE V Sbjct: 514 AY---------------KATNYITQGTAYSVAADTIVRLHDAGLSDEIHLFMHDEFVVS- 557 Query: 637 PDTDEFNASMLYHLMTSNPS----WAKG 660 A + +M + P W KG Sbjct: 558 ----RDAAPDVEAIMQTPPEFMVRWTKG 581 >gi|60117328|gb|AAX14432.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila mojavensis] Length = 276 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 44/308 (14%), Positives = 91/308 (29%), Gaps = 57/308 (18%) Query: 92 RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 ++++ +L + + E F + + Sbjct: 1 SVDDLMIMSY------SLDTGKHDHSIPNIVAHNLSENAEIFSAKTLIAIHEKLKQRLFQ 54 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 E F Y + D + L + + G +++ L+ Sbjct: 55 EKL--FTIYERFD------------------KPLMKVIFDMEKNGILLNIQKLQELSDKF 94 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSN 266 L+ E+ +L + ++L LF + GL+ + ++ T VL + Sbjct: 95 QQVIAVLEDEIYNLAG-ERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEAL 153 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 ++ + N S+ + L++ ++ T A+ TGR S Sbjct: 154 EEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATATGRLSSSNPNL 213 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P S + +R IA +G K++ AD + IE Sbjct: 214 QNIPIRSEEG-------------------------NLIRQAFIAPKGHKIISADYSQIEL 248 Query: 387 RVLAWMAG 394 + L Sbjct: 249 KPLGTRCQ 256 >gi|60117346|gb|AAX14438.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila mojavensis] Length = 193 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 76/214 (35%), Gaps = 31/214 (14%) Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 + + G +++ L+ L+ E+ +L + ++L LF Sbjct: 1 MKVIFDMEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLAG-ERFNIASPKQLSDVLFN 59 Query: 246 ETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 + GL+ + ++ T VL + ++ + N S+ + L++ ++ Sbjct: 60 KMGLNKKKKSKKSGSYSTNYEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDP 119 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 T A+ TGR S QN+P S Sbjct: 120 LDGRIHTSFSTTATATGRLSSSNPNLQNIPIRSEEG------------------------ 155 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 + +R IA +G K++ AD + IE R+LA +A Sbjct: 156 -NLIRQAFIAPKGHKIISADYSQIELRLLAHVAN 188 >gi|48429404|gb|AAT42470.1| PolA [Escherichia coli B] Length = 179 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 61/193 (31%), Gaps = 28/193 (14%) Query: 46 DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 D + ++LK LE+ V N ++R +L +++ T++ + Sbjct: 1 DQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNS 58 Query: 106 ---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 + ++ E L + E ++ A G Y Sbjct: 59 VAGRHDMDSLAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAA 106 Query: 163 GDVTVTREIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT ++ ++ P K L + I G +D + H ++ + Sbjct: 107 EDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEEL 166 Query: 212 DVERTKLDQELES 224 + +L+++ Sbjct: 167 TLRLAELEKKAHE 179 >gi|32442301|gb|AAP82221.1| DNA polymerase [Podovirus GOM] Length = 399 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 72/440 (16%), Positives = 122/440 (27%), Gaps = 74/440 (16%) Query: 95 CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 TLVL+R + K K+ L A + + + Y + + + Sbjct: 1 DTLVLSRLVYPNRRERDAIHRWKYLDTKLYGSHSLKAWGQRLDFAKGDYGQTEDAWEKLS 60 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKE------QELWYLDQTINDRGYCVDVALAHTLN 208 EYC DV +T +++ L+P QEL + G DV A Sbjct: 61 EAMVEYCIQDVELTHKLYGILKPKLQSRKALSLEQELTVICNRQERHGIPFDVDRAQLFY 120 Query: 209 QIVDVERTKLDQELESLTYGL--------------------VSSSRCLEKLKTWLFLETG 248 + R++L EL V + R + + L Sbjct: 121 SDLCGRRSELQTELIDKFGWWYTGELREPKTKPSYSKLIKVVFNPRSRQHIAKRLKDFYN 180 Query: 249 LHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSD 301 + VLS P+A ++ + ++ + ++ + Sbjct: 181 WKPTEFTPSGEPKVDESVLSKL--EYPEA-KLLTEYLLVNKRISQLAEEDQAWLKLER-N 236 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 GR+ G + +G+ T R S +P S Sbjct: 237 GRIHGRVNTMGS-VTSRCSHSHPNLAQIPSVSAP------------------------YG 271 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 R A EG + + D++G+E R LA + F+ G+ V Sbjct: 272 KECRELFCAPEGFRFLGVDISGLELRCLAHY------MALFDNGDYGKKLLEDDIHTVNQ 325 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 R K A Y G + S G + A L K + A Sbjct: 326 NAAGLSTRNQAKTFIYAFLYGAGDEKI---GSIVGGSSEEGAKLKKRFLSQIP---ALEK 379 Query: 482 CRWMQENHPEHAIEDLFIGT 501 R + + G Sbjct: 380 LRNAVKKKAQKGYLKGLDGR 399 >gi|309810235|ref|ZP_07704080.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D] gi|308169507|gb|EFO71555.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D] Length = 214 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 60/224 (26%), Gaps = 44/224 (19%) Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + ++L + A NF + A + + +++ + Sbjct: 24 MKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQ 83 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + A + E G A R + D+ N Sbjct: 84 IKDYMK---AAVKLAREKGYAETI-----------------------MHRRRLLPDIHNK 117 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630 R +Q + DI+ M+ K ++L +HD Sbjct: 118 NF---NIRSFAERTAINSP------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHD 168 Query: 631 EIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 E++ + P + L +M +PL A+ + Sbjct: 169 ELLFDVPSEELDLIKTLVLKIMQQAAQ--LDVPLIADANWGHNW 210 Score = 57.8 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 50/153 (32%), Gaps = 11/153 (7%) Query: 396 QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L+AF+ G D++ T + F ++ +VT R K + + Y Sbjct: 6 KIMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGIS-----DYGLA 60 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L ++ N+ E++ +++ + + E + + R+ K+ Sbjct: 61 KNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHR--RRLLPDIHNKN 118 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + + + G A K + Sbjct: 119 FNIRSF---AERTAINSPIQGSAADIIKIAMIK 148 >gi|156377033|ref|XP_001630662.1| predicted protein [Nematostella vectensis] gi|156217687|gb|EDO38599.1| predicted protein [Nematostella vectensis] Length = 425 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 66/458 (14%), Positives = 119/458 (25%), Gaps = 53/458 (11%) Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGK----EL 129 L + + V + L+ + S + EG+ L Sbjct: 1 YKALCQGCGITVS-GECEDPKVASWLLDPGCKEKTLQHLVGQYASSKMVILEGEVPCGSL 59 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189 + + + D+ V + + + E + Sbjct: 60 TGSLALASQNTLSGRVRACTESVLVFSMMKKLRLDL-VEDGLDYAFQKV---EMPVMQCL 115 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G+ A L I+ + L+QE L S + + Sbjct: 116 VRMELNGFGFSEAECDRLKAILQAKLRTLEQEAYRL-ANHSFSLTSPDDVAR-------- 166 Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR-ASRSAVLKLNTLVEAMNSD---GRLR 305 VL K L P + R + + V+ + + R+ Sbjct: 167 -----------EVLERLKSLHPLPRIILEWRRVNCALTKVVFPVQREKLFHKSLHMSRIY 215 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSR--------SHEELDQIITHLPTSITSDPDPL 357 T Q + TGR S QN+PR L Sbjct: 216 PTSQTH--TTTGRVSFNEPNLQNVPRDFEIELPSVIAESPPLGTRRRENIQKPARSDHSG 273 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 + +R+ + G L+ AD + +E R++A +A + K G D++ Sbjct: 274 MSCAVSMRTAFVPCAGGVLLAADYSQLELRLIAHLADDSRLRKVLNGGGDVFRMIAGSLA 333 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 + P V QR K + + Y GAKA + L L + + Sbjct: 334 GLEPGSVDDKQRQRAKQICYGIIYGIGAKALGE-----QLELGEEDASMYIEKFKSRFSG 388 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + + E + R A H Sbjct: 389 IRRYLKSTVEQCRKTGYVTTITKR--RRYLPAVNSTHP 424 >gi|157311100|ref|YP_001469095.1| gp096 [Lactococcus phage KSY1] gi|108861440|gb|ABG21639.1| gp096 [Lactococcus phage KSY1] Length = 895 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 67/447 (14%), Positives = 143/447 (31%), Gaps = 95/447 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDV 66 D ET G+ + E + L +G DD + + + + +KE Sbjct: 22 DIETT--------GLDYFTE--KITLVQYGTDDEHQQWY---TEEPTIEDIKEL---KKR 65 Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG 126 T+ HN F+ + F + +PIH ++VL + G +L +LK+++ K+ Sbjct: 66 TLFWHNGKFDTKFIAYHFGVMLPIHG--DSMVLLHALGYSDSL-----SLKVAAAKLLGV 118 Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR------------ 174 + H+ + + F EY DV T + + Sbjct: 119 ENW------DIEHDLKLSKGPDEEASKLKFF-EYGLKDVKYTYALMRLLLTGVNSQSDDP 171 Query: 175 ------------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + E + + + I G +++ +++ Sbjct: 172 EDSKNFNTIDDLQYNVYNNELKAYSAFRYIEMTGTP-----LGDMSKS-QDAIDGKIEDI 225 Query: 223 ESLTYGLVSSSRCLEKLKTWLF--LETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 E+ +K+ L + ++ + + VL+ + + Sbjct: 226 ENKWGFRFDWVNSSDKVGALLSLVDKRLKPGDNGKISVTKEVLTKHIQEVGDFAYDVKEV 285 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + + + ++ + DGR+ ++TGR S Q +P+ S Sbjct: 286 RKLKKL-IQFFDSW-NKLGHDGRIFPQFNI--TTKTGRTSSSNPNLQQVPQDS------- 334 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 VR+ + A +G K + D + +E R A+ A E ++ Sbjct: 335 ----------------------RVRNIIAAPKGMKFIECDYSQLELRCAAYCAQEPAMME 372 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKD 427 A++ G DL+ T+ + Sbjct: 373 AYKNGADLHTKTWESMNGRPFSDDHDM 399 Score = 78.6 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 22/212 (10%), Positives = 56/212 (26%), Gaps = 47/212 (22%) Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + ++ + + +A+ + + + N + ++ Sbjct: 715 FSLLYGAQSKTLRDYARTNMGIDMSQEDADEFHRAFFESYPGLVSWHNACKRFLDE---- 770 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 + + P GR V ++ + + Sbjct: 771 ----------------------HGYIQSPLGRRRYLPTV---------YSKDWGEKESAY 799 Query: 595 GKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPDTDEFNAS--ML 647 + VQ + DI M + + T+HD I+ + + + ++ Sbjct: 800 RRSINTPVQGLGSDICVSAMTTILQHPEYGKTFFVHGTIHDAILVTAYEDQAEHVAYDII 859 Query: 648 YHLMTSNPSWAK-----GLPLKAEGYESKRYR 674 +M P K GL L A+ + + Sbjct: 860 KKIMEHPPILDKLPTTNGLYLIADADVTDSWG 891 >gi|324103783|gb|ADY17822.1| DNA polymerase [Arsenophonus nasoniae] gi|324103785|gb|ADY17823.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage] Length = 234 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 90/222 (40%), Positives = 128/222 (57%), Gaps = 10/222 (4%) Query: 260 QRVLSSNKKLTPQAI---QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 L ++ + R+++ ++ K L++++++DGRLRGT QF GASRT Sbjct: 4 ASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRT 63 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGK 374 GRW+G +F P NLPRP+ + +D+ + L D +Q+ S +R C+IA +GK Sbjct: 64 GRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAPQGK 123 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YVTTYARSFNVAPAQVTKDQR 429 KLV++DL+ IE R+LAW+AGE WK+KAF ++ Y YAR+F + P VTK QR Sbjct: 124 KLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFYLLPENVTKAQR 183 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 IGKVMEL LGY GG AF A GL+L+ A N Sbjct: 184 QIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIP 225 >gi|270695696|ref|ZP_06222972.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212] gi|270315979|gb|EFA28032.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212] Length = 288 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 87/280 (31%), Gaps = 85/280 (30%) Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q + AF G+D++++T A F V+ +VT +QR K + Sbjct: 1 IELRIMAHLSGDQGLINAFSQGKDIHLSTAAEIFGVSLDEVTSEQRRNAKAIN------- 53 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G++ + + Sbjct: 54 -------FGLIYGMS------------------------------AFGLSRQLGISRPDA 76 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 ++ + Q++ V + ++ + + Sbjct: 77 QKYMDLYFQRYPSVQQFMTDIRAKAK--------------------------AQGYVETL 110 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620 GR L D+ ++ + + R +Q + DI+ M+ + Sbjct: 111 FGRRLYLPDINSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKIDEVIRH 161 Query: 621 --GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSW 657 ++++ VHDE+V E + F + M + + Sbjct: 162 DPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAAEF 201 >gi|163937889|ref|YP_001642775.1| DNA-directed DNA polymerase [Bacillus weihenstephanensis KBAB4] gi|163865744|gb|ABY46800.1| DNA-directed DNA polymerase [Bacillus weihenstephanensis KBAB4] Length = 359 Score = 134 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 63/374 (16%), Positives = 115/374 (30%), Gaps = 78/374 (20%) Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380 QN+P S+ VR EG + AD Sbjct: 28 SKGSNLQNIPARSKEG-------------------------ARVRGAFKPQEGWFYLAAD 62 Query: 381 LAGIEARVLAWMA----GEQWKLKAFETGEDLYVTTYARSFNVAPAQV---------TKD 427 L+ IE R++A + G+ F G DLY T FN+ T Sbjct: 63 LSQIEPRIMAHIMWTIYGDNSLRSIFTAGRDLYTTMAMMVFNLDEKYCVDKAYDPTGTFK 122 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 RA+ K LA Y +T G+++ + + N R ++ Sbjct: 123 PRAMMKTGVLAKSYDQQVG---NFCNTMGVSIEVG--NMFYEKFDTAFPSFINMVRDKRK 177 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + + G ++ +++E + + + ++ +++ V Sbjct: 178 FAYDKGYSETLYGRK---------RRFPQLAEWSKIVKRNERKLMDLYIERARIRKKVVK 228 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 Y R ++ + + R +++Q Sbjct: 229 SRYD------------FERLDTLEELIKPMAEMRNMVGYWERAS------FNSVIQGTGA 270 Query: 608 DILAEGMMNAT----KAGYDIVLTVHDEIVCETPDTD--EFNASMLYHLMTSNPSWAKGL 661 DIL M+ K G+ + ++HDEI E P D N ++ +MT + L Sbjct: 271 DILKLNMIRLYRECQKRGWYLNASIHDEIKVEVPRKDLTLENCDLITDIMTKSVE--LSL 328 Query: 662 PLKAEGYESKRYRK 675 PLK++ + K Sbjct: 329 PLKSDTVIETVWGK 342 >gi|115743049|ref|XP_001201676.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] gi|115912854|ref|XP_791257.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] Length = 361 Score = 134 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 61/336 (18%), Positives = 109/336 (32%), Gaps = 39/336 (11%) Query: 332 PSRSHEELDQI-ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 S+ T L S P P + C+R+ +G ++ AD + +E R+LA Sbjct: 49 RSKKGRMTRVGAYTPLTMSSGPTPMPGPKFAVCIRNVFCPFKGGLMLAADYSQLELRLLA 108 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 +A ++ + +G D++ A+ +V VT +QR K M + Y GA+A + Sbjct: 109 HLAKDRCLMSILNSGSDVFKQIAAKWKHVDVDSVTAEQRQQAKQMCYGMIYGIGARALGE 168 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 L + S +++ +N+ + + E G R A Sbjct: 169 -----QLGVCEEDAAAFMESFKSQYKGMKNYLLEVVKQCREKGYVQTLTGR--RRYLPAI 221 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + + T G A K V + L + P+ + Sbjct: 222 HHTNPGARN---QAERQAVNTTVQGSAADLVKTAMVKID------RRLAVEYPATKRSHK 272 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 S R+ R T T G +VL +HD Sbjct: 273 HK-EEEESGTAPGRRKSRRLQTSTTGFTPP--------------------GAFLVLQLHD 311 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKA 665 E++ E D + + M + + LP+K Sbjct: 312 ELIYEVRREDVDQVAQLIKTEMENAMKLSVRLPVKV 347 >gi|298103520|ref|YP_003714762.1| gp12 [Streptomyces phage phiSASD1] gi|293338461|gb|ADE43479.1| gp12 [Streptomyces phage phiSASD1] Length = 618 Score = 134 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 87/570 (15%), Positives = 161/570 (28%), Gaps = 105/570 (18%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ---VLKEA 60 + +D ET CG+ YA + A ++ H P + Sbjct: 41 VAVDTET--------CGLKIYAWGPGFLRLAQFGNETEAWALPIEHGPEYVEAAAWALRV 92 Query: 61 LENTDVTIVAHN-SYFERTVLKACFNLDIPI--HRWICTLVLARSNGL--------PSAL 109 L + + HN S F+ V + + + + T +LA+ S L Sbjct: 93 LPD----LTGHNWSGFDALVSDEHLGVPLEVTCAKVTDTQILAKLVDPRQQMEGGIGSGL 148 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR--LFGEYCKGDVTV 167 KA + K + + + EY DV + Sbjct: 149 KANSARYIDPTAPDT------QDGLKAVFKSLKLKITEGFAKIPLDHPTYLEYGLLDVIL 202 Query: 168 TREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 T + RLE + E + + + G +D L + + + Sbjct: 203 TSRLRPRLEATLAKLGVPKTLAVYEHRVARICAQMVRAGLVLDEEYTTGLQSDLAYDADR 262 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQA 273 + V S ++ L G L + T + + VL + L Sbjct: 263 YSEVA---LGYGVESVNSARQVSAALLD-LGETLTEKTASGALKVDKAVLMALADLDRDW 318 Query: 274 IQVFN----------NRMR-ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 + + R + A + + +E +++ GR+ +Q + A RT R S Sbjct: 319 KPIRSREPNVLADAVLRSKRAGKWRSAYADNFLENVDAQGRIHPNVQSMQA-RTFRMSVT 377 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 Q LP + +R ++A G+ +V D Sbjct: 378 QPAVQTLPSSDK----------------------------MIRRALLADPGEVMVSVDFQ 409 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 +E RVLA +A + A GEDL+ T F T R + K + Y Sbjct: 410 AVELRVLAALADVKRMKAAIAAGEDLHSFTARLVFG---DGFTDKDRKVSKGIAFGKVYG 466 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 GGA + A + + + + + + + T Sbjct: 467 GGAATVSR-----QTGAPLGAVQRAMAKYDQVYPEVGRAAKDWRIEAFNNHMV-GISITG 520 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTI 532 R + ++ + + Sbjct: 521 HRLPLD--RDRSYAITNYL--VQSTARDCL 546 Score = 70.5 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 62/149 (41%), Gaps = 25/149 (16%) Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 A ++ + + R ++ N+++ + +G L Sbjct: 482 AVQRAMAKYDQVYPEVGRAAKDWRIEAFNNHMVGISITGHRLPLD--------------- 526 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCETPDTDEFNA 644 R+ +Y +T +VQ+ +RD L + +++ +AG + L +HDE++ P + A Sbjct: 527 --RDRSYA--ITNYLVQSTARDCLGQALIHMDEAGLVPYLRLPIHDEVLASVPKAE---A 579 Query: 645 SMLYHLMTSNPSWAK-GLPLKAEGYESKR 672 + + +++ G+P++A+ KR Sbjct: 580 EEISRAIAKAMTFSLRGVPIEADAEIGKR 608 >gi|324103779|gb|ADY17820.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage] Length = 234 Score = 134 bits (336), Expect = 7e-29, Method: Composition-based stats. Identities = 92/222 (41%), Positives = 128/222 (57%), Gaps = 10/222 (4%) Query: 260 QRVLSSNKKLTPQAI---QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 L ++ + R+++ ++ K L+++++ DGRLRGT QF GASRT Sbjct: 4 ASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSVDGRLRGTKQFCGASRT 63 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGK 374 GRW+G +F P NLPRP+ + +D+ + L D +Q+ S +R C+IA +GK Sbjct: 64 GRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAPQGK 123 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YVTTYARSFNVAPAQVTKDQR 429 KLV++DL+ IE R+LAW+AGE WK+KAF ++ Y YAR+FN+ P VTK QR Sbjct: 124 KLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPKNVTKAQR 183 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 IGKVMEL LGY GG AF A GLNL+ A N Sbjct: 184 QIGKVMELGLGYGGGVAAFLTFALAYGLNLDELAEAALPNIP 225 >gi|48697456|ref|YP_024841.1| Pas55 [Actinoplanes phage phiAsp2] gi|47679674|gb|AAT36803.1| Pas55 [Actinoplanes phage phiAsp2] Length = 1415 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 93/604 (15%), Positives = 175/604 (28%), Gaps = 107/604 (17%) Query: 5 FIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 D ET L Y ED V + A DD PV + + + + + Sbjct: 826 TFDLETGDAERL-------YVEDGQAYVRIGAVAHDDRPV--IELG-GSTVAEDVAARIR 875 Query: 63 NTDVTIVAHNSY-FERTVLKACFNLDIPI-------HRWICTLVLARSNGLP-------- 106 TI HN F+ L + + R L+ AR P Sbjct: 876 -QGATITGHNIMAFDLPALVRAEAMTMDEIHDLADEGRLFDGLLAARLLDPPMARDKGVD 934 Query: 107 ----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYC 161 L + + L + + K L ++ + + P E RLF Y Sbjct: 935 ATRKYDLGTLAVSYGLGEKYTDLSKPLAKKYGGDWGQIPVDTDDPDPERAEDARLFRTYM 994 Query: 162 KGDVTVTREIFKR--------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 D ++R + R + ++E + L I G+ VD L VD Sbjct: 995 VQDAELSRRLHARLLEELGGTVPEYLTREHRVAALAAQIRHNGFLVDQPLLTERVAEVDQ 1054 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLK----------------TWLFLETGLHLEDLTET 257 + + L +++++ + Sbjct: 1055 RKAESLAWLAEHAGVPLANAKGVAYKSPLASTGGKEALEAALRAAGATSFWRTPNSGQFD 1114 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK--LNTLVEAMNSDGRLRGTLQFLGASR 315 T + + +V R + TL++ M+ DGR+ + F A+ Sbjct: 1115 TSGEHMKHLAREYHHLPKVREIAKHVFRIVGARSVYQTLMDNMSPDGRVHPKIGFDQAT- 1173 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 GRWS L + H E R+ ++ G+ Sbjct: 1174 -GRWSVTRPGLTVLGKRGGRHVE--------------------------RAVLLPDPGEV 1206 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ ADL+ ++ R +A ++ + ++ + +D + F A D+R K + Sbjct: 1207 LMSADLSQVDMRAVAGLSQDLAYIEMLKK-DDPHAEIAKELFGTA------DRREEAKAI 1259 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 Y G KA + G + S E + + ++ + Sbjct: 1260 GHGWNYGRGIKAISE-----GQEIEPALVRRFDASMRERFGRLVEWQTEVRAVAEAGQLL 1314 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 D G + + + A + G ++ RR +P++ + Sbjct: 1315 DNGFGRLMRADPQRAHTQGPALMG-----QGAARDIMMTG--LLRLDRRILPMLRAQIHD 1367 Query: 556 NNLI 559 + Sbjct: 1368 EIVF 1371 Score = 72.5 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 9/140 (6%) Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 + I G+ I R ++ + R++ + + Sbjct: 1269 IKAISEGQEIEPALVRRFDASMRERFGRLVEWQTEV-RAVAEAGQLLDNGFGRLMRADPQ 1327 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV-LTVHDEIVCETPDTDEFNASM- 646 R +T G L Q +RDI+ G++ + ++ +HDEIV P + Sbjct: 1328 RAHTQGPALMG---QGAARDIMMTGLLRLDRRILPMLRAQIHDEIVFSVPVAEAEEVGRA 1384 Query: 647 LYHLMTSNPSWAKGLPLKAE 666 + ++ W +G+P+ A+ Sbjct: 1385 VVEALS--FEW-RGVPILAD 1401 >gi|110589136|gb|ABG77077.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 151 Score = 133 bits (335), Expect = 9e-29, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 47/185 (25%), Gaps = 45/185 (24%) Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + + + ++ V+ + + Sbjct: 1 LGIERSEAQEYVDLYFARYPGVAAYMERTREQARE------------------------- 35 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + GR L D+ R +Q + DI+ M+ Sbjct: 36 -QGYVETLFGRRLYLPDIK----ARGPRRSAAERTAINAP------MQGTAADIIKRAML 84 Query: 616 NA------TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGY 668 + +++ VHDE+V E ++ A L M S A +PL E Sbjct: 85 AVDGWIEADRPPLRLLMQVHDELVLEVQESFLETACQHLRDCMESAAELA--VPLLVEVG 142 Query: 669 ESKRY 673 + Sbjct: 143 IGDNW 147 Score = 44.3 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 9/98 (9%), Positives = 20/98 (20%), Gaps = 12/98 (12%) Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L + + + + +E E + G R Sbjct: 1 LGIERSEAQEYVDLYFARYPGVAAYMERTREQAREQGYVETLFGR---------RLYLPD 51 Query: 517 VSE---LWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + + G A KR + + Sbjct: 52 IKARGPRRSAAERTAINAPMQGTAADIIKRAMLAVDGW 89 >gi|254432090|ref|ZP_05045793.1| Pas55 [Cyanobium sp. PCC 7001] gi|197626543|gb|EDY39102.1| Pas55 [Cyanobium sp. PCC 7001] Length = 1757 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 99/714 (13%), Positives = 183/714 (25%), Gaps = 211/714 (29%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP-VELWDCVHD-PVMPQVLKEALEN 63 +D ET S L A P + L P L L + Sbjct: 1146 LDLETCSATQLW----------------APAVPGRPFIRLVGTEAGIDTDPSSLVPWLAS 1189 Query: 64 TDVTIVAHNS-YFERTVLKACFNLDI----PIHRWICTLVLARSNGLP------------ 106 +AHN F+ L LD+ + I T+VLA + P Sbjct: 1190 GGRL-IAHNGFGFDYLALARHHGLDLLQAAEEGKLIDTMVLALALDPPKPPVDGKLSGGQ 1248 Query: 107 ----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN----HREAWRLFG 158 +L E + K + K+L K H + + + Sbjct: 1249 IARLYSLDRCAERAGVPG-KTNDLKKLARDAAKAHGHTGKPKQLEAIGYGLIPRNHPDYL 1307 Query: 159 EYCKGDVTVTREIFKRLEPL----SSKEQELW---YLDQTINDRGYCVDVALAHTLNQIV 211 Y +GDV R ++ L P +E+ L I G +D+ L + + Sbjct: 1308 AYLQGDVAACRAVYDALVPDGQLSPYARREMRVMGRLVTGITLHGTRLDLQLTQSRYDAI 1367 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--------------TGLHLEDLTE- 256 + + + L + + L + L L + Sbjct: 1368 EARKEECRSRLVADYGLPTMT-SSGAAAANPLSCKGAAEAITKAAADVGLVLPLTATGKP 1426 Query: 257 TTCQR----VLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 +T + +L ++ Q ++ + + + + L + SDGR+ Q Sbjct: 1427 STSKDALGPLLEQVREQGNQTQTELLETILSLTGARSVYGTAL-DHCQSDGRIHP--QVA 1483 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 +GR+S + E R+ + Sbjct: 1484 PLQASGRFSLTNPGITVFGKRGGRVTE--------------------------RAIFLPD 1517 Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 + +L+ ADL+ I+ R A Sbjct: 1518 ADDHRLLAADLSQIDMRA---------------------------------------MAA 1538 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 + +Q G A ++A+ GL+ + + + Sbjct: 1539 HAQDPAYLELFQPGRDAHSEIAAAVGLSRSDAKAIGHGWNYGMSVNGMVR---------- 1588 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 E+ + R+ ++ +++ + Sbjct: 1589 -----HGISQALAEQFDQGMRRSFPQLVAWRDQIRERAASGQ------------------ 1625 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 D +M P+ R +T G L Q +RD++ Sbjct: 1626 -LLDNGFGRMMRPN----------------------PARAHTQGPALMG---QGTARDLM 1659 Query: 611 AEGMMNATKAGYDIVLT----VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAK 659 M+ + +V VHDE+V P A + M WA Sbjct: 1660 ---MLALLRLPLWLVPQLRFLVHDELVFSVPVARLDEAGEQILQAM--TFDWAP 1708 >gi|154336355|ref|XP_001564413.1| mitochondrial DNA polymerase I protein A [Leishmania braziliensis MHOM/BR/75/M2904] gi|134061448|emb|CAM38475.1| putative mitochondrial DNA polymerase I protein A [Leishmania braziliensis MHOM/BR/75/M2904] Length = 1264 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 55/372 (14%), Positives = 97/372 (26%), Gaps = 109/372 (29%) Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 L G + TGR S QNLPR + E + L Sbjct: 970 TLHPNFLQEG-TDTGRLSCVEPNLQNLPRNGITSTEEEGEEDLLG--------------- 1013 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 R C +A+ G L+ D IE RVLA + G+ +KA + D++ T F P Sbjct: 1014 -FRRCFVAAAGCVLLSIDYQQIELRVLAHLCGDPALVKALTSSADIHQTIAEVVFKKKP- 1071 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 V+ ++R++ K + + Sbjct: 1072 -VSTEERSLAKRVVFGVL------------------------------------------ 1088 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 A + ++ + Sbjct: 1089 --YGAGPKTLATHMGVTVDRALHITSLLTNAFPGINTYHRRVIAETR------------- 1133 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 N + SGR D+ + + R+ ++V Sbjct: 1134 -------------ANGFVRTLSGRLRYLPDICSTVLSRRSY---AERQA------FNSVV 1171 Query: 603 QAVSRDILAEGMMNATKA--------GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTS 653 Q + D++ M+ +K ++ +HDE+V +L M+ Sbjct: 1172 QGSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMVFMVRKEHLRTVVPLLSSAMSH 1231 Query: 654 NPSWAKGLPLKA 665 +PL Sbjct: 1232 AMQLL--VPLSV 1241 >gi|71276173|ref|ZP_00652453.1| truncated phage-related DNA polymerase [Xylella fastidiosa Dixon] gi|71163091|gb|EAO12813.1| truncated phage-related DNA polymerase [Xylella fastidiosa Dixon] Length = 160 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 72/163 (44%), Positives = 89/163 (54%), Gaps = 11/163 (6%) Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVG 574 W L A I + + + M+ + L + LPSGR L Y D Sbjct: 2 AFWKALQFAATDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEH 56 Query: 575 NNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 SY+ T TR+ TR TYGGKL ENI QAVSRD+LA M AGY IVLTVHDE+ Sbjct: 57 GALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEM 116 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + E D FNA+ L LM + P WA+GLPL AEG+++ RYRK Sbjct: 117 ITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 159 >gi|28198296|ref|NP_778610.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182680933|ref|YP_001829093.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|28056366|gb|AAO28259.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182631043|gb|ACB91819.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] Length = 154 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 70/138 (50%), Positives = 83/138 (60%), Gaps = 6/138 (4%) Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKL 597 + ++ + L L LPSGR L Y D SY+ T TR+ TR TYGGKL Sbjct: 16 HTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKL 75 Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657 ENI QAVSRD+LA M AGY IVLTVHDEI+ E D FNA+ L LM + P W Sbjct: 76 VENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPW 135 Query: 658 AKGLPLKAEGYESKRYRK 675 A+GLPL AEG+E+ RYRK Sbjct: 136 AQGLPLAAEGFETHRYRK 153 >gi|167946072|ref|ZP_02533146.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 151 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 47/185 (25%), Gaps = 45/185 (24%) Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + + + ++ V+ + + Sbjct: 1 MGIERSEAQEYVDLYFARYPGVAAYMERTREQARE------------------------- 35 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + GR L D+ R +Q + DI+ M+ Sbjct: 36 -QGYVETLFGRRLYLPDIK----ARGPRRSAAERTAINAP------MQGTAADIIKRAML 84 Query: 616 NA------TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGY 668 + +++ VHDE+V E ++ A L M S A +PL E Sbjct: 85 AVDGWIEADRPPLRLLMQVHDELVLEVQESFLETACQHLRDCMESAAELA--VPLLVEVG 142 Query: 669 ESKRY 673 + Sbjct: 143 IGDNW 147 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 8/98 (8%), Positives = 20/98 (20%), Gaps = 12/98 (12%) Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + +E E + G R Sbjct: 1 MGIERSEAQEYVDLYFARYPGVAAYMERTREQAREQGYVETLFGR---------RLYLPD 51 Query: 517 VSE---LWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + + G A KR + + Sbjct: 52 IKARGPRRSAAERTAINAPMQGTAADIIKRAMLAVDGW 89 >gi|324103781|gb|ADY17821.1| DNA polymerase [Nasonia vitripennis secondary endosymbiont phage] Length = 234 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 89/222 (40%), Positives = 126/222 (56%), Gaps = 10/222 (4%) Query: 260 QRVLSSNKKLTPQAI---QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 L ++ + R+++ ++ K L++++++DGRLRGT QF GASRT Sbjct: 4 ASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRT 63 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGK 374 GRW+G +F P NLPRP+ + +D+ + L D +Q+ S +R C+IA GK Sbjct: 64 GRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAPXGK 123 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YVTTYARSFNVAPAQVTKDQR 429 KLV++DL+ IE R+LAW+AGE WK+ AF ++ Y YAR+F + P VTK QR Sbjct: 124 KLVISDLSNIEGRMLAWLAGENWKVXAFSEFDNGKGDDLYKLAYARAFYLLPXNVTKAQR 183 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 IGKVMEL LGY GG AF A GL+L+ A N Sbjct: 184 QIGKVMELGLGYGGGVAAFLTFALAYGLDLDEXAEAALPNIP 225 >gi|91224626|ref|ZP_01259887.1| DNA polymerase I [Vibrio alginolyticus 12G01] gi|91190514|gb|EAS76782.1| DNA polymerase I [Vibrio alginolyticus 12G01] Length = 680 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 75/663 (11%), Positives = 153/663 (23%), Gaps = 178/663 (26%) Query: 43 ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL--A 100 + D P++L+ L+ +AH++ E L L T + A Sbjct: 109 YVIDLTKFKE-PKLLQPLLDLPTTY-IAHHAKAELHCL-WQLGLT-EPRTIWDTCIAERA 164 Query: 101 RSNGLP----------SALKAVGEALKLSSQKMEEGKELI--ARFCKGETHECLYDRNKP 148 R GL + A + ++ + + D Sbjct: 165 RYLGLHVFDNDRVFDSENAEICARAEHAENNRIRYALNTVASRYDIHHRFNLVKSDLQHS 224 Query: 149 NHREAWRLFGE----YCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTIND 194 F Y D V +++ + E + + Sbjct: 225 FIDYDSGEFTREQIHYAAEDAIVAAKLYLPQMQQLTLQGCYHHLITVEMPWVTTNAAMEW 284 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL--HLE 252 G VD + + + L + L + + ++ K F + L H Sbjct: 285 HGVSVDREKCNAVLNASTPKLETLRSQ---LAQMGLDNPNSHQQ-KETFFRQLNLLDHFN 340 Query: 253 DLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE--AMNSDGRLRGTLQ 309 + + ++L + P + S+ ++ + L+ + SD R+ + Sbjct: 341 KGGKYSFKLQLLKDLAHIHPAIGLL----AEFSKVQAIERDILLRPTIIGSDSRVHPEHK 396 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 L TGR S LP +R +I Sbjct: 397 QLEV-VTGRQSCASPNLLGLP-------------------------------GAMRPLII 424 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV----- 424 +G + AD + IE + A + ++ + F D+Y + + + Sbjct: 425 PKKGNGIGEADYSQIEVAITAAVYSDKNLIAKFNA-GDIYTVMAQEFYAIDLDEEDRQCD 483 Query: 425 -------TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 KD+R I K L + Y Sbjct: 484 SDTFKHKHKDKRDIMKTCVLGILYGLSPFGL----------------------------- 514 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 +++ + + + Q + Sbjct: 515 ---------------GSRLEISELEAKQLMNRFLAMFPTLKHMMETAPQQA--AYRGYVS 557 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 R +N L+ + Sbjct: 558 TSTGLHRH----------------------------RSNNGALSRHETNW---------M 580 Query: 598 TENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASML-YHLMT 652 Q + + + +VL +HD + E P L ++M Sbjct: 581 VNMPAQGTAAALFKLAGNRLYQLYKPYNAKLVLAMHDAFIFEAPLDHMEEVGTLTTNVMI 640 Query: 653 SNP 655 Sbjct: 641 QAV 643 >gi|324103777|gb|ADY17819.1| DNA polymerase [Spalangia cameroni secondary endosymbiont phage] Length = 234 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 91/229 (39%), Positives = 131/229 (57%), Gaps = 10/229 (4%) Query: 260 QRVLSSNKKLTPQAI---QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 L ++ + R+++ ++ K L++++++DGRLRGT QF GASRT Sbjct: 4 ASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKXKALLKSVSADGRLRGTKQFCGASRT 63 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGK 374 GRW+G +F P NLPRP+ + +D+ + L D +Q+ S +R C+IA +GK Sbjct: 64 GRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAPQGK 123 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YVTTYARSFNVAPAQVTKDQR 429 KLV++DL+ IE R+LAW+AGE WK+ AF ++ Y YAR+FN+ P VTK QR Sbjct: 124 KLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPKNVTKAQR 183 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 IGKVMEL LGY GG AF A GL+L+ A N + +A Sbjct: 184 QIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPHKVKREA 232 >gi|66812036|ref|XP_640197.1| hypothetical protein DDB_G0282679 [Dictyostelium discoideum AX4] gi|60468189|gb|EAL66199.1| hypothetical protein DDB_G0282679 [Dictyostelium discoideum AX4] Length = 1459 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 78/713 (10%), Positives = 170/713 (23%), Gaps = 215/713 (30%) Query: 50 DPVMPQVL---KEALENTDVTIVAHNSYF---ERTVLKACFNLDIPIHRWICTLVLARSN 103 + + L K +++ + V + F ++ I + ++ A Sbjct: 767 GGKIEEKLNFMKNIIQDESIVKVVY---FCQESIKPFIKYYDW-INLRNCWDPMIGAWLL 822 Query: 104 GLPS------ALKAVGEALKL------------------SSQKMEEGKELIARFCKGETH 139 +++++ LKL ++ + + Sbjct: 823 ESDLLSTKKVSIESLAHFLKLKSLNNNNNNNNNNNNNNNNNNNNNNNQNNNNLIFTEKEL 882 Query: 140 ECLYDRNKPNHREAWRLFGEYC--KGDVTVTREIFKRLEPLSS---------KEQELWYL 188 + R + + Y D + +++ + E L + Sbjct: 883 NYILKRESLLYDKDKDTSSNYNNYLYDHWLVLKVYNVISISLFEFDLNFSFSNEMRLIPI 942 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT----------YGLVSSSRCLEK 238 + G C ++ + + +L + + ++ Sbjct: 943 LSKMELEGICCNIGKLDHYLKRISEFTKELKESVNKDDGDDDDDNNFKRFEEFKLGSFKE 1002 Query: 239 LKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + WL G+ ++ ++ T +R+ +N+K+ +V R S + + Sbjct: 1003 VSGWLNQH-GVDIKSTSKETLIQQKRLNINNQKVVTFIDRVLFYRR-LSALKGHYIEPYL 1060 Query: 296 -----------EAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRPS---------- 333 N++ + + Q+ + TGR S Q +PR S Sbjct: 1061 LKYTNTTTTTKTRSNTNSTFQISCQWNQTGTATGRLSSSEPNLQTIPRTSTSLINPTTAT 1120 Query: 334 --------------------------------RSHEELDQIITHLPTSITSDPDPLQIIS 361 + Q ++ + Sbjct: 1121 TTTTTTSTNNDLNDLDDLDDLDYNGNDGGSLDPDFIQALQDDDDNNNINNNNNNDDDDNI 1180 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R+ I+ EG LVV D +E R++A + ++ ++ FE+G D+ R + Sbjct: 1181 INIRNSFISREGFSLVVLDYNQVELRIIAHFSRDKHLIEYFESGSDVINMMAVRLSDRDD 1240 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 V + + + Sbjct: 1241 LDVN-----------------------------------------NVDKETRDRVKRIVY 1259 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 K + K VS ++ Sbjct: 1260 GILYGIQAFSLGKLLNIPIYKASDHIKNFYFKFDGVSNFIQITKS---NAEKSHVVPTLG 1316 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 KR K K +I Sbjct: 1317 KRIRKLDSKFKT------------------------------------------KAVNSI 1334 Query: 602 VQAVSRDILAEGMMNATKAGY---------------DIVLTVHDEIVCETPDT 639 +Q S DI+ M+ + +L VHDE+V E PD Sbjct: 1335 IQGSSADIIKLAMITIMNELFLPLLNLNSNNNNKIPRFLLQVHDELVFEVPDE 1387 >gi|254502983|ref|ZP_05115134.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11] gi|222439054|gb|EEE45733.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11] Length = 593 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 81/523 (15%), Positives = 154/523 (29%), Gaps = 112/523 (21%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTL 97 D D + P + +K E V V HN F+ + + + H+ TL Sbjct: 28 DEATVYADQIGFPPIKDAIKRLKEADRV--VFHNGQGFDIHAINHFYPGTLTPHQVWDTL 85 Query: 98 VLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 V AR ++L G+ L E K F + Sbjct: 86 VAARLLNPSERANSLDDWGKRLG-------EYKGEFKDFSRFSK---------------- 122 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY-------LDQTINDRGYCVDVALAHTL 207 EY + DV VTR+++ +LEP + + + G+ ++ A L Sbjct: 123 -ELVEYARQDVVVTRKLYHKLEPQLRNWGQSFELENLFAYIISLQVQNGFHLNTGKARGL 181 Query: 208 NQIVDVERTKLDQELESLT---------------------------------YGLVSSSR 234 + E + +++EL+ + + + Sbjct: 182 EAELRQEASDIERELQEVFPPRLIADKRKGTAEVMPKANRKAIRKGQPYSRLKLEIFNPG 241 Query: 235 CLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS--AV 288 + L + + + + VL+ K P+A + V Sbjct: 242 SRPQAADRLIKKYKWKPKKFTDKGSPAIDESVLAKLK--YPEAKVLNRYLRITKLLGQVV 299 Query: 289 LKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 N ++ +N + R+ G + +GA+ TGR S + + Sbjct: 300 DGENGWLKLVNEETSRVHGAVNTIGAA-TGRCSHFKPNMAQVDKKDLR------------ 346 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R C A G LV D G+E R+LA G+ + Sbjct: 347 ----------------MRECWEARPGWDLVGVDAEGLELRMLAHYLGKFDGGALTRALLE 390 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM----ASTTGLNLNTFA 463 + + V +R K + AL Y G ++ A G+NL Sbjct: 391 GSKEAGTDAHTINQKAVGLHKRDNAKRLLYALMYGAGDVKLGQIIVDDAREAGINLKGNK 450 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 + + + + + + + + + + G R+ Sbjct: 451 KALGAKARKDLAKGMKGLDKLVDKVKDKAGKKKYIQGLDGRRI 493 >gi|170056642|ref|XP_001864122.1| DNA polymerase theta [Culex quinquefasciatus] gi|167876219|gb|EDS39602.1| DNA polymerase theta [Culex quinquefasciatus] Length = 1177 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 63/495 (12%), Positives = 134/495 (27%), Gaps = 98/495 (19%) Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 + + G+ D A L + + ++ + + L G ++ Sbjct: 771 MPIHVALARMELVGFPADGAKLGALIARLKAAKERIAERVRQLNGGRKLDFGSTREVAAV 830 Query: 243 LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 L + + T ++VL +P A V R S + + L + G Sbjct: 831 LKVPKDR---NGRARTSRQVLERI--DSPLAALVIAWRKIDSNLSRT-IEPLGRGIV--G 882 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 R + TGR S Q + + + +P + Sbjct: 883 GRRIYGSSYCFTSTGRISMHEPNLQTVVK-----------------DFRVEIEPGTVEMF 925 Query: 363 CVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 R + K L+ AD +E VL ++ ++ L ++G+D++ A+ ++ Sbjct: 926 SCRGTFACEDSSKVLISADFCQLELCVLTHLSQDRKLLAVMKSGKDVFRGIAAKWNHIED 985 Query: 422 A-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 +V+ + R K + + Y GA++ LN++ + + Sbjct: 986 EREVSDELRNYTKAIVYGVIYGMGARSMAAE-----LNVDEDTARTLMEQFHATYPEIRR 1040 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + + + E + G R+ + + E Sbjct: 1041 YAEKVVQVTRERGYIETLTGR---------RRYLPAI----HSTDSTKRSEAERQAVCTT 1087 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 + S + + R K E Sbjct: 1088 VQG----------------------------------SAADILKNAILRMARNLRKYRE- 1112 Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAK 659 + +VL +HDE++ E P + M + Sbjct: 1113 ----------RLALGEVE-----LVLHMHDELIFEAPRDQARKVGKILKSSMENCA--NL 1155 Query: 660 GLPLKAEGYESKRYR 674 LPL+ + + Sbjct: 1156 SLPLRVKVKSGPSWG 1170 >gi|254505350|ref|ZP_05117498.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11] gi|222436194|gb|EEE42876.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11] Length = 580 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 81/523 (15%), Positives = 154/523 (29%), Gaps = 112/523 (21%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTL 97 D D + P + +K E V V HN F+ + + + H+ TL Sbjct: 15 DEATVYADQIGFPPIKDAIKRLKEADRV--VFHNGQGFDIHAINHFYPGTLTPHQVWDTL 72 Query: 98 VLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 V AR ++L G+ L E K F + Sbjct: 73 VAARLLNPSERANSLDDWGKRLG-------EYKGEFKDFSRFSK---------------- 109 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY-------LDQTINDRGYCVDVALAHTL 207 EY + DV VTR+++ +LEP + + + G+ ++ A L Sbjct: 110 -ELVEYARQDVVVTRKLYHKLEPQLRNWGQSFELENLFAYIISLQVQNGFHLNTGKARGL 168 Query: 208 NQIVDVERTKLDQELESLT---------------------------------YGLVSSSR 234 + E + +++EL+ + + + Sbjct: 169 EAELRQEASDIERELQEVFPPRLIADKRKGTAEVMPKANRKAIRKGQPYSRLKLEIFNPG 228 Query: 235 CLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS--AV 288 + L + + + + VL+ K P+A + V Sbjct: 229 SRPQAADRLIKKYKWKPKKFTDKGSPAIDESVLAKLK--YPEAKVLNRYLRITKLLGQVV 286 Query: 289 LKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 N ++ +N + R+ G + +GA+ TGR S + + Sbjct: 287 DGENGWLKLVNEETSRVHGAVNTIGAA-TGRCSHFKPNMAQVDKKDLR------------ 333 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R C A G LV D G+E R+LA G+ + Sbjct: 334 ----------------MRECWEARPGWDLVGVDAEGLELRMLAHYLGKFDGGALTRALLE 377 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM----ASTTGLNLNTFA 463 + + V +R K + AL Y G ++ A G+NL Sbjct: 378 GSKEAGTDAHTINQKAVGLHKRDNAKRLLYALMYGAGDVKLGQIIVDDAREAGINLKGNK 437 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 + + + + + + + + + + G R+ Sbjct: 438 KALGAKARKDLAKGMKGLDKLVDKVKDKAGKKKYIQGLDGRRI 480 >gi|315282488|ref|ZP_07870892.1| DNA polymerase I [Listeria marthii FSL S4-120] gi|313613872|gb|EFR87612.1| DNA polymerase I [Listeria marthii FSL S4-120] Length = 143 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 21/176 (11%), Positives = 49/176 (27%), Gaps = 44/176 (25%) Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + + V E ++ + ++ + I Sbjct: 1 DFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH----------------------- 35 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------T 618 R ++ + R +Q + DI+ + M+ Sbjct: 36 -RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMSERLKSE 85 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 K ++L VHDE++ E P+ + + +M + +PLK + + Sbjct: 86 KLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 139 >gi|21234370|ref|NP_640280.1| DNA polymerase [Vibrio phage VpV262] gi|21064883|gb|AAM28367.1| DNA polymerase [Vibrio phage VpV262] Length = 661 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 71/541 (13%), Positives = 149/541 (27%), Gaps = 63/541 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVMPQV 56 M L +D ET + D + E ++ ++ F ++ +HD Sbjct: 26 MNFLVLDLETDTDGD--ERSPDATWEQNDIVSASWVFGTGGRGTEKFVYGGIHD---MDE 80 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSA------ 108 L + + D +VAHN+ F+ L LD T++ L + Sbjct: 81 LIQDMYEAD-FVVAHNAKFDIKWLIRA-GLDPSRILVADTMLAEYVLTGNLKAGKKGALT 138 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 L A+ + L K +L+ + D + Sbjct: 139 LGALAKQY-LGVTKDPLVDKLMRGGVSPRVIPKSLLERRNKSDIFQTRNLWLKLRDEMME 197 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 R++ L + I G +D + I +++ +L + G Sbjct: 198 RDVIHLFY----NRCLLSPVLADIELNGVHLDKERVCEEHDIASRRMAEVEADLMDMIDG 253 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNK--KLTPQAIQVFNNRMR 282 + R + +++ +++ T + VL K + + + Sbjct: 254 R--NPRSVPQMQEFIYDVLKFKPLKKRGVEWRPTGEEVLQFEARTKKQQAFLDLKKEFAQ 311 Query: 283 ASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + L+ + D + T R S + Sbjct: 312 LNADLSKNLDYFYGVVTEREDCLFYAQFNQAQ-TVTHRLSSSGI------------KTKF 358 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 ++ + + R+ ++ D A IE RV ++ + + Sbjct: 359 EMYPKAKSIQLQNSPRKYKRLYSARN-----PDWYVIEMDGAQIEFRVAGYIGQDTRICQ 413 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 G D++ T + + +VTKDQR K Y G G + Sbjct: 414 DIVDGVDVHRFTASVLNHCDEEEVTKDQRTDAKPDTFKPLYGG----------QYGTDDQ 463 Query: 461 TFAHLVKTNSAPEEWEDAENF-CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + N + + +++ + ++ H F + Q V Sbjct: 464 MAYYEAFRNKYQDITQAQQDWLMKVLRNKEITHPTGITFYYPNASMSSSGYCQDFPSVCN 523 Query: 520 L 520 Sbjct: 524 Y 524 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 24/106 (22%) Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS-RDILAEGMMNA- 617 + P+G + Y + + S + VQ ++ +I+ ++ Sbjct: 494 ITHPTGITFYYPNASMSSSGYCQDF----------PSVCNYPVQNLATAEIIPIALVAIW 543 Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 K +V TVHD ++ E+P + LM WA Sbjct: 544 HVMKAMKLQSFLVNTVHDSVISESPRDEL-------ELMYEISKWA 582 >gi|255087648|ref|XP_002505747.1| predicted protein [Micromonas sp. RCC299] gi|226521017|gb|ACO67005.1| predicted protein [Micromonas sp. RCC299] Length = 953 Score = 131 bits (328), Expect = 6e-28, Method: Composition-based stats. Identities = 71/506 (14%), Positives = 127/506 (25%), Gaps = 112/506 (22%) Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELES-LTYGLVSSSRCLEKLKTWLFLETGL 249 + G D + + + +++ + + G + +++ L+ L Sbjct: 515 QMEHVGLGFDPSAVRAAVGDLRRKLAGIEESAAAAMPDGARVNLASPQQVAEALYGTLKL 574 Query: 250 HLED-------LTE--TTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEA- 297 T TT L S + P V R AV K + + Sbjct: 575 PPPSSNAQQGAKTAQLTTKDDALRSLRDKRLHPLPGLVLEYR------AVSKTIAMCNSY 628 Query: 298 --MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 M RLR + TGR S Q + + Sbjct: 629 ASMARGKRLRCDWN-NTRTATGRLSSTNPNIQAVGK------------------------ 663 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL----YVT 411 + +R A GK L+ AD + IE R+LA +AG++ + + Sbjct: 664 -DETGEFSLRRAFSAPPGKVLLAADYSQIELRMLAHLAGDRGLVALLRRQITDGGDVFER 722 Query: 412 TYARSFNVAPAQV-TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 + P K+ R K L Y G + L N+ Sbjct: 723 IWNAGRGAPPETPVAKEDRDRAKRTVYGLLYGQGKTGLAE-----KLGCTGDVAQGLINA 777 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + F +E L G + + E+ Sbjct: 778 FFRAFPGVRAFVTRTKERARVEKRVVLPSGR---------HRPLPGFASADQR-----ER 823 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 KA+ + + + L P G + TTT Sbjct: 824 AGAERKAVNSLIQGSAADLMKIAMCRWLAAASPVG-------------FEPTTTEHADVA 870 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET---PDTDEFNASML 647 + + +V +HDE++ E P A ++ Sbjct: 871 S-------------TAATL-----------PARLVAQIHDELLFECEDSPTAVRAAAQVV 906 Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRY 673 M +P A+ + + Sbjct: 907 AACMERAVP-QLAVPTPAKVSVGRTW 931 >gi|311743682|ref|ZP_07717488.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272] gi|311312812|gb|EFQ82723.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272] Length = 1564 Score = 130 bits (326), Expect = 8e-28, Method: Composition-based stats. Identities = 99/661 (14%), Positives = 174/661 (26%), Gaps = 161/661 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L +D ET L D + + D + Sbjct: 999 LTVDVETT-GYPLGH-------RDYALRTIQL---GNDAFAIDFDAADPEQAQVAGRHVG 1047 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPS-----ALKAVGEAL 116 + AH++ + L +D+ R T++ A+ S LK + A+ Sbjct: 1048 AAAMLHAHSATADLIPLAHAGLIDLDDAWSRMHDTVIPAKLADPASTGSDPGLKKLAGAV 1107 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-------RLFGEYCKGDV---- 165 + +E K P R W Y DV Sbjct: 1108 LGDAAVSTAAEEGRKALFKAGKWLTEVKSTTPISRSGWAQVNPACETMIRYAASDVIDDA 1167 Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 + + L +E+ + + DRG +D L L+ T + + Sbjct: 1168 ALALRLPPLPPELLERERLAQRMTARVADRGLRLDADLVERLHAEQTAALTAASEHIR-- 1225 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDL---TETTCQRVLSSNKKLTPQAIQVFNNRMR 282 V + +++ L G L + + VL K + + + R+ Sbjct: 1226 -AFGVDNPGSDQQVAAAL-ERLGAPLPRTKTGRPSVAKGVLDPLKNVDGEIGDLVRARLD 1283 Query: 283 ASRSAV---LKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + L L + + N DGR R T+ + A+ TGR S Q +PR Sbjct: 1284 YQTAENRLGLFLEPYRQLVTNGDGRARPTI-YTLAADTGRMSCVRPNLQQVPREG----- 1337 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 R+C+ A G L+ AD +G+E RV A ++ +Q Sbjct: 1338 ------------------------GFRACITADPGHVLISADFSGVELRVAAALSQDQNL 1373 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + + A+ V K +R K G Sbjct: 1374 MAIVADPDRDIHREIAQL--VWGPDAGKPERYQAKRKV--------------FGRLYGSG 1417 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 LN + + +A +S Sbjct: 1418 LNGLITSDPP-----------------------------VSEPIAKAIIEAMDLMTPGLS 1448 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + D SGR++ Sbjct: 1449 SWSRMVADGV-------------------------DAGRTEFQAYSGRTIYMPTDRG--- 1480 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT--KAGYDIVLTVHDEIVCET 636 Y G +Q +R++L + ++ + + G ++L VHDE+V Sbjct: 1481 --------------YAGP--NYCIQGTARELLIDALVRWSGTRWGNAVLLPVHDELVVHV 1524 Query: 637 P 637 P Sbjct: 1525 P 1525 >gi|222871907|gb|EEF09038.1| predicted protein [Populus trichocarpa] Length = 161 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 50/192 (26%), Gaps = 44/192 (22%) Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 A A + + ++ V+ + Q + Sbjct: 3 AFGLASNLGIEREAAKHYIDRYFMRYPGVAHYMEQTRQTARE------------------ 44 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + GR L D+ R +Q + D Sbjct: 45 --------QGYVETVFGRRLWLPDINGGNGPRRQA---AERAAINAP------MQGTAAD 87 Query: 609 ILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGL 661 ++ M+ + G ++ VHDE+V E P + L LM + + + Sbjct: 88 LIKLSMIAVQDWLEGERLGTRQIMQVHDELVLEVPQAELELVRVKLPELMCAVAT--LNV 145 Query: 662 PLKAEGYESKRY 673 PL AE + Sbjct: 146 PLVAEVGSGANW 157 >gi|109392407|ref|YP_654951.1| gp54 [Mycobacterium phage Cooper] gi|88910241|gb|ABD58171.1| gp54 [Mycobacterium phage Cooper] Length = 617 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 113/722 (15%), Positives = 182/722 (25%), Gaps = 212/722 (29%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD----DHPVELWDCVHDPVMPQVLKE 59 + D ET ++ + +D L D D +V Sbjct: 57 IAFDIETPGLDNV-----------FTINCVTAAWDWPDGGTQTILLDPARDEEHWEVAVA 105 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNL-DIPIHRWICTLVLARSNGL----PSALKAVG- 113 L T+ HN F+ L + D I R + TL++ R P L A+ Sbjct: 106 LLH-AARTVAFHNVPFDAPPLYHAGLINDSTIRRIVDTLLITRFAVPDVMVPKNLTALSV 164 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEY-CKGDVTVTREI 171 L L K L F + Y D T + Sbjct: 165 RHLGLDDDKGG----LERAF----KAAGYKTQQAGFEGMDITSPVYRYGAMADTVATLRV 216 Query: 172 FKRLE-PLSSKEQELW-------------YLDQTINDR----------GYCVDVALAHTL 207 + + L T G VD A Sbjct: 217 EPLMRAKALHWATDHPFATYGATTQAEAEELLATQETVHRVMLRRSAVGLAVDRAYLDRY 276 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH------LEDLTETTCQR 261 + VD++R EL +GL S KL +L L T Sbjct: 277 AEQVDIDRNLAIAELA--AHGLEGGSGKGAKLVEYLAERGELPANWPRTPTRKLRATKAD 334 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 L A + + + L + + GR + LGAS TGR + Sbjct: 335 -LDGLDHPLAAAQRKLAQIDKV----MGYLEKVDRQASVTGRCHPQVGVLGASATGRMAY 389 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 Q P + +I +G+ L D Sbjct: 390 GSPELQQFPADA--------------------------------RAIITDDGQGLTSIDW 417 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE +A MA + L FE GEDLY + R + KV+ L Sbjct: 418 SQIEPVTMALMAKDHEFLAPFEAGEDLYE---------PIQRSAGIDRPVAKVVLLGTM- 467 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 GL + + A + Sbjct: 468 -------------YGLGI------------------------------AKLARQIGHTEE 484 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 + ++++ + ++ E ++ Sbjct: 485 SAAQIRRQMFEAMKGCERWMRKVQNVAET--------------------------YGRVV 518 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 GR L Y K +Q + D+LA ++ + G Sbjct: 519 TAGGRILPVDQG-------------------YEYKAVNYAIQGSAYDVLAHSIVEMDRRG 559 Query: 622 YDIVLTV--HDEIVCETPDTDEFNASMLYHLMTSNPS----WAKGLP-LKAE-GYESKRY 673 L + HDE+V +T A + +M + P WA+ +P L+ + + Sbjct: 560 IGDHLQLAMHDELVVDT-----EVAEEVQQIMLTPPEFLITWAERVPVLRTDRADMGSAW 614 Query: 674 RK 675 K Sbjct: 615 AK 616 >gi|74228402|dbj|BAE24040.1| unnamed protein product [Mus musculus] Length = 299 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 50/365 (13%), Positives = 98/365 (26%), Gaps = 121/365 (33%) Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 D S +R + G ++ AD + +E R+LA ++ + ++ TG D++ Sbjct: 9 EEKASDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVF 68 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 + A + P V D R K + + Y GAK+ + + + + Sbjct: 69 RSIAAEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGEQ-----MGIKENDAASYID 123 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 S ++ +F R +N ++ + +G R+ + + Sbjct: 124 SFKSRYKGINHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDN-------- 166 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 Y R +NTT Sbjct: 167 ---------------------------------------PYHKAHAERQAINTT------ 181 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATK------------------------------ 619 VQ + DI+ +N K Sbjct: 182 ------------VQGSAADIVKIATVNIQKQLETFRSTFKSHGHRESMLQNDRTGLLPKR 229 Query: 620 ---------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYE 669 G +L +HDE++ E + D + + M + LK + Sbjct: 230 KLKGMFCPMRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMECAIK--LSVKLKVKVKI 287 Query: 670 SKRYR 674 + Sbjct: 288 GASWG 292 >gi|152003765|gb|ABB17229.2| DNA polymerase [Cyanophage S-CBP2] Length = 588 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 92/625 (14%), Positives = 165/625 (26%), Gaps = 143/625 (22%) Query: 1 MATLFIDFETRS---PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57 M L D ET + C + K E V F FDD + L Sbjct: 1 MK-LVFDIETDGFLRKLTTVHCVVAKDIETGEV----FKFDDS-------GRHQSVSSGL 48 Query: 58 KEALENTDVTIVAHNS-YFERTVLKACFNLDIPIHR-WICTLVLARS------------- 102 +E ++ HN F+ ++ + P + TL+L+R Sbjct: 49 TLLMEAEEL--WGHNIIGFDVPAIQEIYPFFQPWESTYYDTLILSRLFFTDMLDRDLRSK 106 Query: 103 -------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 +L+A G L + K E GK+L + Sbjct: 107 PANMPGNLYGRHSLEAWGYRLGVL--KSEYGKQLHGDWATYTP----------------- 147 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKE-------QELWYLDQTINDRGYCVDVALAHTLN 208 EYC+ DV I K +P + + + G+ D+ A L Sbjct: 148 EMLEYCEQDVEANLPIVKLFQPKLEQYADAIKTEHDCALVMTRQEQAGFPFDIDKARALE 207 Query: 209 QIVDVERTKLDQELE---------------------SLTYGL-----VSSSRCLEKLKTW 242 + E L E+ +T S + + Sbjct: 208 SKLRSELETLSDEMRATFTFVAGKEFTPARNNATRGYITGCPFTKLTEFSPTSRDHIAWA 267 Query: 243 LFLETGLHL----EDLTETTCQRVLSSNK-KLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 G + + VL++ + + ++ + + K N+ ++ Sbjct: 268 FQQHRGWEPIEMTDTGKPKIDEEVLNAIGTEEAKKFGRILELQKHVGMLSEGK-NSWLQM 326 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 + DGR+ + A+ GR + +P Sbjct: 327 VEKDGRIHHSCVLNTAT--GRNAHMRPNLAQVPSGHE----------------------- 361 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 R EG V AD +G+E R LA A G Sbjct: 362 ------FRELFTPGEGYVQVGADASGLELRCLAHYL-------ARFDGGKFGKVLLEGDI 408 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 + A + R GK + L Y GG A + + + Sbjct: 409 HTDLANIYGTDRKTGKTVTYCLIYGGGDTKLGLSA-----GEPKKSAASRGKKIRQAIMK 463 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF-EQTIENGK 536 + + E A + G + R+ H+ ++ L ++ + Sbjct: 464 DLDGFAQLITAVQERAQSGVITGIDGRPI--RMRKAHAALNYLLQSCGAVICKKWVVRSN 521 Query: 537 AIIARKRRDVPLVYMKKDKNNLILM 561 ++ D + D+ L + Sbjct: 522 ELLTEAGIDYTPLAFVHDEQQLAVR 546 Score = 43.2 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 8/89 (8%) Query: 594 GGKLTENIVQAVSRDILAEGMMN----ATKAG--YDIVLTVHDEIVCETPDTDEFNASML 647 ++Q+ I + ++ T+AG Y + VHDE AS L Sbjct: 497 AHAALNYLLQSCGAVICKKWVVRSNELLTEAGIDYTPLAFVHDEQQLAVRPDQVEMASTL 556 Query: 648 YHLMTSNPSWA--KGLPLKAEGYESKRYR 674 L + A +PL + + Sbjct: 557 ISLAMKDVEHAIKFRVPLDCDVQSGANWG 585 >gi|320158402|ref|YP_004190780.1| DNA polymerase [Vibrio vulnificus MO6-24/O] gi|319933714|gb|ADV88577.1| DNA polymerase [Vibrio vulnificus MO6-24/O] Length = 687 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 107/760 (14%), Positives = 187/760 (24%), Gaps = 190/760 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L D ET + ED+ E H L + L Sbjct: 26 RILAFDIETNGLLMTVSRFHTAVCEDL--------VTGEVREYRPHEH-----HELLKDL 72 Query: 62 ENTDVTIVAHN-SYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALK-- 117 DV VAHN ++ LK F DI + I TLVL+R + + + Sbjct: 73 YEADVL-VAHNGINYDVPALKKLFPFWDIQPTKVIDTLVLSRLLFADIKDRDMSGVRRWR 131 Query: 118 -----------LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + K+ L A + + ++ Y + E YC+ DVT Sbjct: 132 LREEGHEVTGWVLPPKLLGSHSLKAWGYRLQEYKGDYGEQEDAWAEFSEDMLIYCRQDVT 191 Query: 167 VTREIFKRLEPL--------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 VT ++ +RL E E+ +L G+ DVA A L + +R + Sbjct: 192 VTCKLIRRLMKEFPDASFKAMQLEHEIQWLMSQQERNGFKFDVAKAEQLYFKLLGDRETI 251 Query: 219 DQELESLTYGLV--------------------------------SSSRCLEKLKTWLFLE 246 Q+L + + L Sbjct: 252 RQKLVDKFGTWYASNGVTTPKRSMNRMGMSYTAGAPYTKLKEVTFNPASRDHCAKVLQEA 311 Query: 247 TGL--HLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNS 300 + D + + VLS K ++ N ++ + + Sbjct: 312 GVIFTEFTDGNKPKIDEEVLSHIKLPE---AEMLNEFFMLNKRIGQIAEGNQAWLRLVTP 368 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 +G + G++ GA TGR +P Sbjct: 369 EGFIHGSINPNGA-VTGRALHSHPNIAQVP------------------------SGRAPY 403 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFE----TGEDLYVTTYA 414 R C +G L+ +D +G+E R L ++ + Sbjct: 404 GQECRECFTVPDGWVLLGSDASGLELRCLGNRMFPWDKGAYNKVILEGDIHWENAQAAGF 463 Query: 415 RSFNVAPAQVTKDQRA---IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 + V + D K A Y GG + G + + Sbjct: 464 VDYGVIRDKHNPDHELRRGKAKTFIYAFLYGGGDELI---GMQVGYTHEEYLAWKEA--- 517 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + R + E + + VKK + + + Sbjct: 518 GAHIPIIKQLERRGERWTRE----RVCYILKGKEVKKKFLEGLPAL-------------- 559 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + K K++ ++ GR + R + Sbjct: 560 ------------DKLIKKCKKAAKDDGYVIGLDGRKVFCRSQHS---------------- 591 Query: 592 TYGGKLTENIVQAVSRDILAEGMM----NATKAGYD--------IVLTVHDEIVCETPDT 639 +Q+ I + + GY VHDE+ Sbjct: 592 -----ALNTQLQSDGALICKMWCVVVNLMMQERGYKHGFDGDYAFCAWVHDEVQVACRSE 646 Query: 640 D-EFNASMLYHLMTSNPSWAK-----GLPLKAEGYESKRY 673 + + + PL AE + Sbjct: 647 AIAQEMGQICK---DAMHFVERYYSVDCPLDAEFDIGSSW 683 >gi|289178749|gb|ADC85995.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12] Length = 297 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 58/387 (14%), Positives = 118/387 (30%), Gaps = 104/387 (26%) Query: 291 LNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + TL++A+N DGR+ T A+ TGR S QN+P + + + Sbjct: 8 VQTLMDAINPRDGRIHTTFTQTVAA-TGRLSSVDPNLQNIPNRNATGRD----------- 55 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 +RS + EG L+ AD + +E R++A ++G++ +KAF++G D Sbjct: 56 --------------IRSAFVPGEGFADLLSADYSQVELRIMADLSGDEALIKAFKSGADF 101 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + + + + +VT DQR K M L Y + L + + Sbjct: 102 HRYVASMVYGIPVDEVTPDQRNHVKAMSYGLAYG-----LSTYGLSQQLGIPSKEAAALR 156 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + + + ++ + N G R+ ++ A Sbjct: 157 SRYFQTFGKVHDYLESLVSNARNTGYTQTMFGR---------RRYFPALTSANRVARDAA 207 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS-GRSLVYRDVGNNRSYLNTTTRQL 587 E R + + + + + R+L ++ + Sbjct: 208 E-------------RGALNAPIQGTAADIMKIAMIRVDRALRDGNLNSRIV--------- 245 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML 647 + L V E+ P ++ ++ Sbjct: 246 ---------------------------LQIHDE-----LVV--EL---APGEEKRVTELV 268 Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRYR 674 M + A +PL ++ Sbjct: 269 RDAMEHAVNIA--VPLDVSTGVGSDWQ 293 >gi|194100568|ref|YP_002003893.1| gp54 [Mycobacterium phage Nigel] gi|192758284|gb|ACF05057.1| gp54 [Mycobacterium phage Nigel] Length = 618 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 111/722 (15%), Positives = 189/722 (26%), Gaps = 211/722 (29%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-----DCVHDPVMPQVLK 58 + +D ET + + ++ D + +++ Sbjct: 57 VAMDIETPGLDN-----------AFTINCVTMAWEMPTTGHVRTVILDPSRNRADHAIVR 105 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD-IPIHRWICTLVLARSNGL----PSALKAVG 113 + +E+ HN+ F+ L D I++ + TL+++R P L A+ Sbjct: 106 DMVEHAGRLA-FHNAPFDTPPLLHNQLFDRPDINKIVDTLLISRFAVPDVMVPKNLTALS 164 Query: 114 -EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY-CKGDVTVTREI 171 L L K + + Y D T + Sbjct: 165 VRHLGLDDDKGGL-ERAFKAAGYKTQAAGFEGMDIT------SPVYRYGAMADTVATLRL 217 Query: 172 FKRLE-----------------------PLSSKEQELWYLDQTIN-DRGYCVDVALAHTL 207 + QE + G VD A Sbjct: 218 EPLMRAKALHWATDHPFQTYGATTEAEAEQLLWTQETVHRVMLRRSAVGLAVDRAYLDRY 277 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRV 262 + VDV+R EL +GL S KL +L+ L + Sbjct: 278 AEQVDVDRNLAVAELA--AHGLEGGSGKAAKLVEYLYQRGELPEPWPRTPTKKLRATKDD 335 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAV-LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 L P A R A+ V L + + GR + LGAS TGR + Sbjct: 336 LEGL--DHPLAA---AQRKLATIEKVMGYLAKVDRQASVTGRCHPQVGVLGASATGRMAY 390 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 Q P + +I +G+ L D Sbjct: 391 GSPELQQFPADA--------------------------------RAIITDDGQGLTSIDW 418 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE +A MA + L FE GEDLY + R + KV+ L Sbjct: 419 SQIEPVTMALMAKDHDFLAPFEAGEDLYE---------PIQRSAGIDRPVAKVVLLGTM- 468 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 GL + + A + Sbjct: 469 -------------YGLGI------------------------------AKLARQIGHTEE 485 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 + ++++ + ++ E ++ Sbjct: 486 SAAQIRRQMFEAMKGCERWMRKVQNVAET--------------------------YGRVV 519 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 GR L D G Y K +Q + D+LA ++ + G Sbjct: 520 TAGGRILPV-DPG------------------YEYKAVNYAIQGSAYDVLANSIVEMDRRG 560 Query: 622 YDIVLTV--HDEIVCETPDTDEFNASMLYHLMTSNPS----WAKGLP-LKAE-GYESKRY 673 L + HDE+V +T A + +M + P WA+ +P L+ + + Sbjct: 561 ISDHLQLAMHDELVVDT-----EVAEEVQQIMLTPPEFLITWAERVPVLRTDRADMGSAW 615 Query: 674 RK 675 K Sbjct: 616 AK 617 >gi|219815945|gb|ACL37071.1| truncated DNA polymerase I [uncultured bacterium] Length = 557 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 23/187 (12%), Positives = 47/187 (25%), Gaps = 29/187 (15%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----HDPVMPQVL 57 + D ET YA DV ++ +F + C + Q Sbjct: 371 DEISFDTETT----------GTYAHDVELVGLSFCYKTGEGYYIPCPPSANETQALLQHF 420 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEA 115 K ++ + N ++ VLK + ++ T++ + + Sbjct: 421 KPLFDDASKKWIGQNVKYDLIVLKWYG--VLLAGQFFDTMLAHYLIEPEGRRGMDYLSAQ 478 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + +ELI + EY D +T ++ Sbjct: 479 Y--LQYEPVHIEELIGK---------KGKNQLTMKDVELEKIKEYAAEDADITLQLKNTY 527 Query: 176 EPLSSKE 182 Sbjct: 528 SKPFGHF 534 >gi|307579401|gb|ADN63370.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 132 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 70/130 (53%), Positives = 81/130 (62%), Gaps = 6/130 (4%) Query: 552 KKDKNNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAV 605 + + L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAV Sbjct: 2 QYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAV 61 Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 SRD+LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL A Sbjct: 62 SRDVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAA 121 Query: 666 EGYESKRYRK 675 EG+E+ RYRK Sbjct: 122 EGFETHRYRK 131 >gi|115754782|ref|XP_790049.2| PREDICTED: similar to DNA polymerase N [Strongylocentrotus purpuratus] gi|115960873|ref|XP_001194514.1| PREDICTED: similar to DNA polymerase N [Strongylocentrotus purpuratus] Length = 1312 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 54/466 (11%), Positives = 113/466 (24%), Gaps = 142/466 (30%) Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL----HLED 253 + L ++ E ++++ +L+ LF E L + Sbjct: 762 KLQRKNLWELFINLEDEIKDVERQCYKKAGHP-FQITSHIQLRQVLFDELKLDELCPGQK 820 Query: 254 LT-------ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 L ++T + VL K L P V +R Sbjct: 821 LARTNVQNLKSTSEMVLHKLKDLHPLPELVLTHRQ------------------------- 855 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 QN+P+ + ++++S + +R Sbjct: 856 ------------------NIQNIPKQPLQVHKDANGSVVNESTVSSTAPATTLW---MRE 894 Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 + EG + AD IE R+LA ++ + LK F + Sbjct: 895 PFFSHEGWSFIAADFQSIELRILAHLSQDAVLLKVFNDAGSTDIFVQLTC---------- 944 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 GLNL + E + Sbjct: 945 --------------------------EWLGLNLE------DVKTGDRERTKRIVYSVIYG 972 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 A + K++ K V+ ++ Sbjct: 973 VGAERLAETLNDTKENAKAFTKSFLVKFKGVNTFAQRCISECQR---------------- 1016 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 + + R + ++ + ++ + R+ ++Q + Sbjct: 1017 ----------HGHVKTIFHRHRLISNISSQNFHVRSH---AERQA------VNFVIQGSA 1057 Query: 607 RDILAEGMMNA-------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 DI M++ +++ +HDE++ E D D Sbjct: 1058 ADICKLAMIHIMTVLSERNTVRARLLVQIHDELLFEVHDEDINEVK 1103 >gi|254414114|ref|ZP_05027882.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179250|gb|EDX74246.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC 7420] Length = 704 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 98/714 (13%), Positives = 197/714 (27%), Gaps = 126/714 (17%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCV----HDPVMPQVLKE 59 D ET S E + L + V + D + Q L+ Sbjct: 44 FDLETFS----RASTPAIAPETGEIRLIQIAIEQPAVQVIVIDLGWTAKERSRIHQKLES 99 Query: 60 A---------LENTDVTIVAHNSYFE-RTVLKACFNLDIPIHRWICTLVLARS------- 102 L N V +V H+ FE R +L + PI T ++++ Sbjct: 100 LGFWTTLQERLANPQVEVVGHSLDFEQRWMLAKY---NFPIRNLRDTKLMSQVYWAGLDP 156 Query: 103 -----NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 +G P +L++V L +S K + + G+ N+ Sbjct: 157 WLLKQHGKPHSLESVCLRLGISIDKSRQTSDW----GWGDLGNGQLSNNQF--------- 203 Query: 158 GEYCKGDVTVTREIFKRLEPLSSKE--QELWYLD-------QTINDRGYCVDVALAHTLN 208 Y D ++T ++ LEP + + ++ ++ G VD + + Sbjct: 204 -NYAANDASITIKVHDLLEPRLKEIGVWTSYLIECAASPAFAQMSHYGMPVDEGVLADVT 262 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268 + L ++L + +KL + + L ++ LS Sbjct: 263 VAYEAAYQSLVEQLGGTFSECLPHLYSPKKLIALINRRFRVTL----KSANVDDLSKL-- 316 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + ++ +++ V L+++ + +G +RG + GR S QN Sbjct: 317 -WGIPEVRLISVIKTTKTYVDYLHSIQAQVR-NGFVRGKYTQINRKGFGRSSCSEPNLQN 374 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 P P+ EL +RS G V D + + ARV Sbjct: 375 PPSPTTFPPEL-----------------TPYNLPPIRSVFRTHSGCIGVWCDASKLHARV 417 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 + + + F + T A + + Sbjct: 418 ATQASLDPELIARFNSPHGDIFCTIAEKLSQLEGMGSDWTEE----------------NI 461 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 ++ A ++ S + + + + + K Sbjct: 462 RRWTLDKHHANYAQASRLRAMSKSVHYGSQNLQGWRTLQKTIRTKSGIVLSDESAKNSIK 521 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 AWRQ + ++ + + + + L+ + + +GR + Sbjct: 522 AWRQTYKVLASFQHSIVEKAN--------HDLPSVLGMHLIQSRSKFGLGYVRCLTGRGV 573 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ---AVS-------RDILA------E 612 N + + G T V+ A + DI+ Sbjct: 574 FLPKWRQNVEDGREPKIEGKWKKFNGLYSTLVSVKSPDANAAYWTMCEADIIKTFLAYCV 633 Query: 613 GMMNAT-KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPS-WAKGLPL 663 +A + + HDE + AS + M K +P+ Sbjct: 634 AAFDAYPEWEAWVGNCCHDEADIFGKEEFGVEIASAVQMAMERAMRIVIKDIPV 687 >gi|218671595|ref|ZP_03521265.1| DNA polymerase I [Rhizobium etli GR56] Length = 452 Score = 127 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 50/206 (24%), Gaps = 55/206 (26%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---------PVELWDCVHDP--- 51 + D ET S A ++ F+ D+ H Sbjct: 256 VAFDTETTSLD----------AMQAELVGFSMAIADNVADPTGTKIRAAYVPLAHKNGVG 305 Query: 52 ---------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 LK LE+ V VA N ++ ++K I + T Sbjct: 306 DLLGGGLAENQVPMRDALPRLKALLEDAAVLKVAQNLKYDYLLMKRY---GIETKSFDDT 362 Query: 97 LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 ++++ + + E G I + N Sbjct: 363 MLISYVLDAGTGAHGMDPLSEKF--------LGHTPIPY----KDVAGSGRANVTFDLVD 410 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLS 179 Y D VT ++ L+P Sbjct: 411 IDRATHYAAEDADVTLRLWLVLKPRL 436 >gi|309801320|ref|ZP_07695449.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022] gi|308222209|gb|EFO78492.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022] Length = 221 Score = 127 bits (320), Expect = 5e-27, Method: Composition-based stats. Identities = 45/298 (15%), Positives = 87/298 (29%), Gaps = 88/298 (29%) Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 +E R++A ++G++ ++AF +G D + + + + ++T DQR+ K M L Sbjct: 1 MELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGL---- 56 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 GL+ A +K Sbjct: 57 ----------AYGLSTYGLAQQLKI------------------------------SPKEA 76 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 E ++ + +V E L + Sbjct: 77 ESLRNQYFATFGKVHEYLESLVSTARE--------------------------KGYTETI 110 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---- 619 GR + + + + R +Q + DI+ M+ A+ Sbjct: 111 YGRRRYFPGLKSPNRAVRDA---AERAALNAP------IQGSAADIMKIAMIRASDSLRD 161 Query: 620 --AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674 I+L +HDE+V E + A+ L M + A +PL A ++ Sbjct: 162 ACLKSRIILQIHDELVVEIAPGEAEQATALVRNAMEHAVTMA--VPLDASTGIGSDWQ 217 >gi|307106559|gb|EFN54804.1| hypothetical protein CHLNCDRAFT_134785 [Chlorella variabilis] Length = 471 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 60/230 (26%), Gaps = 41/230 (17%) Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + + + G L ++ NF + + + Sbjct: 261 SGEKRRCLLEWEGEGSPPLPLLKDLFASERRKAKVLNFSIAYGKTAHGLSKDWKVSLEEA 320 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + W + + +E + +Q + Sbjct: 321 KDTVDRWYADRPEIRKWQDEQRRQAQQ--------------------------RGYVTTI 354 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---- 619 GR D +R+ R +Q + DI M+ + Sbjct: 355 LGRRRQLPDAALSRN--RAAQSHALRAAINTP------IQGSAADIATAAMLRINEDEAL 406 Query: 620 --AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 G+ ++L VHDE++ E P +T E + M S + PL + Sbjct: 407 QSMGWRLLLQVHDEVILEGPRETAELARERVVACMRSPFTGLGPKPLLVD 456 >gi|291532674|emb|CBL05787.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Megamonas hypermegale ART12/1] Length = 215 Score = 127 bits (319), Expect = 7e-27, Method: Composition-based stats. Identities = 43/292 (14%), Positives = 79/292 (27%), Gaps = 88/292 (30%) Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A M+ ++ + AF +D++ T A+ F V +VT + R K + + Sbjct: 1 MAHMSEDKHFIDAFCHNQDIHTATAAQVFKVPIDEVTSELRGKAKAVNFGII-------- 52 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 G++ A Sbjct: 53 ------YGIS------------------------------AFGLAKNLHISPKEAGEYID 76 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + Q+ S V +E+ + Q + + GR Sbjct: 77 NYLQECSGVKNFMHEIVEKAHQ--------------------------DGFVTTLFGRRR 110 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGY 622 + ++ R +Q + DI+ M A K Sbjct: 111 YLPAIKSSNF---NQRALAERMAMNTP------IQGTAADIIKIAMNRASEAIKEAKLKS 161 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673 I+L VHDE+V E + S + M + S +PL + K + Sbjct: 162 RILLQVHDELVLEVVKEEIEKVSEILTTAMQNTAS--LKVPLIIDINYGKNW 211 >gi|270585837|ref|ZP_06221408.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212] gi|270318509|gb|EFA29597.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212] Length = 141 Score = 127 bits (318), Expect = 9e-27, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 6/143 (4%) Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH- 250 + G +D + + T L+++ +L + ++L+ LF + GL Sbjct: 1 MERTGVLIDSDALFMQSNEIASRLTALEKQAYALAGQP-FNLASTKQLQEILFDKLGLPV 59 Query: 251 ---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 +T + VL ++ S+ + L + +NS T Sbjct: 60 LQKTPKGAPSTNEEVLEELAYSHELP-KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHT 118 Query: 308 LQFLGASRTGRWSGCVFPPQNLP 330 + TGR S QN+P Sbjct: 119 SYHQAVTATGRLSSSDPNLQNIP 141 >gi|282598885|ref|YP_003358435.1| N4 gp39-like protein [Pseudomonas phage LIT1] gi|259048645|emb|CAZ66294.1| N4 gp39-like protein [Pseudomonas phage LIT1] Length = 871 Score = 127 bits (318), Expect = 9e-27, Method: Composition-based stats. Identities = 73/584 (12%), Positives = 143/584 (24%), Gaps = 120/584 (20%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK---- 58 + D E S D + F +++H C + ++ K Sbjct: 185 EISCDIEGFSLS----------MFDSGIATIGFAWNEHDAVQIQCDYREMIQDENKHHGY 234 Query: 59 --EALENTDVTIVA----------HNSYFERTVLKA-------------CFNLDIPIHRW 93 E +V H + + VL L+I R Sbjct: 235 YEPNAEMREVLKWFFTEYPGRIIYHRANHDVKVLIYTLFMEHDLDKEGMHRGLEIMTPRM 294 Query: 94 ICTLVLARSN-----GLPSALKAVGEAL-------KLSSQKMEEGKELIARFCKGETHEC 141 T ++A + +LK +G+ + ++ +L+ Sbjct: 295 DDTKIIAYLALNSTADVSYSLKDLGQEHAGNWAQDDIKDIRLITLDDLMKYNAVDAVTTV 354 Query: 142 LYDRNKPNHREAWRLFGEYCKG-----DVTVTREIFKRLEPLSSKEQELWYL--DQTIND 194 + Y D+ + E+ + L + Sbjct: 355 WVKNKYYPIMVQDQQDALYHGLFKDSLDLIIQMELVGMPMNPRKITEVNTELNNLRDGYH 414 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESL------TYGLVSSSRCLEKLKTWLFLETG 248 A+A I E K + +L+++ + + ++ L Sbjct: 415 NTVMSHPAVAKVEVLIQTSEMEKANAKLKTIQHPLSKFSHIRFNPNSGPQVARLLHEVLD 474 Query: 249 LH----LEDLTETTCQRVLSSN-----KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 L +T L + IQ + + + Sbjct: 475 LPVLDVTATKQPSTSGGTLKKLLNHIKAEPYKDLIQALMDLGAVEKVISAFMPAFKAGRM 534 Query: 300 SDGR---LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 L G+ LG + +GR S QNLP S + Sbjct: 535 KADGMMYLHGSFN-LGGTISGRLSSSDPNLQNLPAGSTYGK------------------- 574 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 V+S A G AD A +E R+ A + + K+K + G D + Sbjct: 575 ------LVKSLFCAPPGFLFGGADFAALEDRINALLTQDPNKIKVYTDGYDGHSMRTFAF 628 Query: 417 FN-------------VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 + + +V D R+ K L Y G M + + Sbjct: 629 WPDKCDGIVDTVDSINSIQKVYPDLRSKAKTPHFLLQYGGSW-----MGLVRQVGFSDEE 683 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + + + + + + + +L Sbjct: 684 AQEIETNYNKLYRVSNEWVAGEIDKATKTGYVELAFNLRLRTPL 727 >gi|212695717|ref|ZP_03303845.1| hypothetical protein ANHYDRO_00237 [Anaerococcus hydrogenalis DSM 7454] gi|212677390|gb|EEB36997.1| hypothetical protein ANHYDRO_00237 [Anaerococcus hydrogenalis DSM 7454] Length = 210 Score = 127 bits (318), Expect = 9e-27, Method: Composition-based stats. Identities = 34/284 (11%), Positives = 70/284 (24%), Gaps = 88/284 (30%) Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + +AF D++ T + F+ +VTK QR+ K + + Y Sbjct: 3 KKMQEAFSHDIDIHTKTASEVFDTPIDEVTKLQRSEAKAVNFGIIYGIS---------DY 53 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 GL+ + + + + Sbjct: 54 GLS-----------------------------------QNLNIPRKRAKEYIENYLNTYP 78 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ + ++ + ++ + R ++ + Sbjct: 79 QIKKYMKDIVKKAKE--------------------------EGFVNTIFNRRRYVPEINS 112 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVH 629 R +Q + DI+ M+ K IVL +H Sbjct: 113 KNF---NVRSFGERVA------LNTPIQGSAADIIKFAMINSYENLKKAKVDAKIVLQIH 163 Query: 630 DEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKR 672 DEI+ E D A + M +PL + Sbjct: 164 DEIIIEASKKDLTKAKEILKSSMEEAVK--LKVPLLVDIDSGDS 205 >gi|290998603|ref|XP_002681870.1| predicted protein [Naegleria gruberi] gi|284095495|gb|EFC49126.1| predicted protein [Naegleria gruberi] Length = 1648 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 78/641 (12%), Positives = 180/641 (28%), Gaps = 120/641 (18%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 +++K L++ + ++T L ++L + + ++ + Sbjct: 1067 KIVKRMLQDKRKPKLTFGFKKQQTRLLQAWDLIVK-DPVLDPMIGDWVQHPDDS------ 1119 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDR--NKPNHREAWRLFGEYCKGDVTVTREIF 172 ++K E L D+ + W + + E+ Sbjct: 1120 ----DNEKTLEEIYLKYFPSDSFLFTPKNDKFVIVKTASQCWPIMT--AVMVSIINLEL- 1172 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + E + T+ G + +++D + ++ ++L SL Sbjct: 1173 ---RQMFEFEMSFSKVLSTMEHNGIRFNYHWIKHNTKLIDAKLDEITRDLNSLQILDGKK 1229 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ---AIQVFNNRMRASRSAVL 289 L L L L+ T + +L KKL P ++ + Sbjct: 1230 IDVSNNDHVALLLFDKLKLKGTERKTNKEILEKLKKLYPDKSYIMKQISEYRYLLNIKTH 1289 Query: 290 KLNTLVEAM--NSDGRLRGTL--QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + + D + Q S TGR S QN+P Sbjct: 1290 HIQNMPNDIKYCPDTQEYRIFASQMQTTSATGRLSVKNPNLQNIP--------------- 1334 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA-FET 404 I II+ +RS I G +V D IE R+LA ++ ++ T Sbjct: 1335 NDIDIKDPFSQKSIITLSIRSAFIPRNGYVMVSIDYKNIELRILAHLSQDRTLSDILSNT 1394 Query: 405 GEDLYVTTYARSFNVAPAQVTK-DQRAIGKVMELALGYQGGAKAFQ---------KMAST 454 D++ +N P + R++ K + + Y G++ Sbjct: 1395 ERDIFEEIARNFWNFRPEEPVPLSHRSLVKQIIYGISYCMGSETLSGKMFNSENEDFMLR 1454 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G + + E+++ + + +++ + E + Sbjct: 1455 PGEDRIEA-AERYKQNFFEKYQGLKQYKDFVENHLVEKHYVETSYSR------------- 1500 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +++ ++ A +R + V + + +++ Sbjct: 1501 ---KRFIHDI------CSDDSSKRAAARRAALNTVSQGSASDIMKIVML----------- 1540 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 S++ ++ R Y M+ L +HDE++ Sbjct: 1541 GIYSFMRHFNKKEERAY----------------------ML----------LQIHDELLF 1568 Query: 635 ETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674 E + ++M + +PL + + Sbjct: 1569 EVREDSLSTFIYCTKNIMQNTDKKLL-VPLPVKVQIGDSWG 1608 >gi|281416182|ref|YP_003347917.1| DNA polymerase [Vibrio phage N4] gi|237701489|gb|ACR16482.1| DNA polymerase [Vibrio phage N4] Length = 678 Score = 126 bits (316), Expect = 2e-26, Method: Composition-based stats. Identities = 110/772 (14%), Positives = 184/772 (23%), Gaps = 197/772 (25%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-WDCVHDPVMPQVLKE 59 M L D ET +D C + D + + WD + L E Sbjct: 1 MKLLISDIETNGLLDTVDKFHCSWTVD-------YFTGEWKAYRPWDF---EQYIKDL-E 49 Query: 60 ALENTDVTIVAHN-SYFERTVLKA----CFN--LDIPIHRWICTLVLARSNGLPSALKAV 112 A IV HN ++ LK F L+IP + TLV++R S LK Sbjct: 50 ACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKRNVLDTLVMSRLL--HSNLKDT 107 Query: 113 GEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 L + K+ L A + + Y + E +YCK DV VT Sbjct: 108 DAGLLRSGRITGKLYGSHSLKAWGMRLGELKGDYGEQEAAWIEFNEPMMDYCKQDVQVTL 167 Query: 170 EIFKRLEPLSSKE--------------QELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 ++F++ + E +L GY D A L V R Sbjct: 168 KLFEKFMSDTWYFPNGADGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLYAEVAGRR 227 Query: 216 TKLDQELESLTYGLVSSSRCLE-----KLKTWLFLETGLHLEDLT-------ETTCQRVL 263 ++ EL + K L + + T + L Sbjct: 228 AEILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKKPTLAKTL 287 Query: 264 S-SNKKLTPQA---------IQVFNNRMRASRSAVLKLNTLVEAMNSDG----------- 302 + TP + ++ D Sbjct: 288 YLKDAPFTPIQHVTFNPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLSLVIEHKLVP 347 Query: 303 -----------------RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 +L G L + G Q P + + TH Sbjct: 348 EEFLPKVELIKEYLVIQKLIGQLAEGDNAWLRMDKGGYIHGQVNPNGAVTGRA-----TH 402 Query: 346 LPTSITSDPDPLQIISDCVRSCVIAS--------EGKKLVVADLAGIEARVLAWMAGEQW 397 ++ P + RS A + V D +G+E R L + Sbjct: 403 SYPNLAQVPSIRKYKGVECRSLFGAEHHRDYHTGKPWIQVGVDASGLELRCLGHFMAKFD 462 Query: 398 KLKAFETGEDLYVTTYARS-FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + T + + T + + K Y GA+ ++ G Sbjct: 463 DGEYINTILNGDIHTQNQIAAGLPTRDN-------AKTFIYGFLYGAGAQKIGEIVGKFG 515 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + K + + Sbjct: 516 EEGKKAGA----------------------------------------ELIKKFLENTPA 535 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 ++ L ++ A + + K + + GR + R Sbjct: 536 IASLREQVADALIKEAKWVGGTQQIKWKRK------------WIKGLDGRKVHVRSPHA- 582 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYD--------I 624 ++Q+ I + ++ AGY Sbjct: 583 --------------------ALNTLLQSAGALICKKWIVEWDKGMQAAGYKHGWDGDYCF 622 Query: 625 VLTVHDEIVCETP--DTDEFNASMLYHLMTSNPS-WAKGLPLKAEGYESKRY 673 + VHDE + E + M W PL EG + Sbjct: 623 MAWVHDEAQLACRTQEIAEDAVRIAQEAMRRVGEHWNFRCPLDTEGKIGANW 674 >gi|237651508|ref|YP_002898979.1| DNA polymerase [Roseophage EE36P1] gi|220898140|gb|ACL81397.1| N4 DNA pol-like protein [Sulfitobacter phage EE36phi1] Length = 876 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 91/742 (12%), Positives = 183/742 (24%), Gaps = 179/742 (24%) Query: 1 MAT-LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVHDPVMPQVL 57 M L D E S L D + F +D + D VL Sbjct: 178 MDVDLTCDIEGFS---LKHY-------DAGIGTITFCWDQHNGIAFEVDNTQTKAEDHVL 227 Query: 58 KEAL-------ENTDVTIVAHNSYFERTVLKACF-------------NLDIPIHRWICTL 97 ++AL T + HN ++ VL LD+ + W CT Sbjct: 228 RQALKTFFYRYRATGRRTIYHNICYDAYVLIYQLFMDHILDQEGLLEGLDVMLENWECTQ 287 Query: 98 VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 ++ + G L L +Q + + + + Sbjct: 288 LITYL----ATNSCAGNELGLKAQ------------AQEFAGNYAVEDIQDITQIELAKL 331 Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQEL----------WYLDQTINDRGYCVDVALAHTL 207 EY D T ++ + +Q+ + G V++ L Sbjct: 332 LEYNLVDGLSTWYVYNKHYQTMINDQQYEIYTGLFKDAVKDIIQMQLTGLPVNMDKVIKL 391 Query: 208 NQIVDVERTKLDQELESLTY------------------------------------GLVS 231 N + E ++ + Sbjct: 392 NNQLGAESEHNVWKMMQTKIVQGFVYQLEEDALKKKNEKLKTKVVTRADLGSTQDLMVAF 451 Query: 232 SSRCLEKLKTWLF--LETGLHLEDLT----ETTCQRVLSSN-----KKLTPQAIQVFNNR 280 + +L+ L+ GL + DLT +T L + T + + + Sbjct: 452 NPGSAPQLQRLLYSDEFLGLPVLDLTDSGLPSTGADTLEKLLNQNISEETKEFLNILLEY 511 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTL--QFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 ++ L ++A LG + +GR S QN+P Sbjct: 512 KASAIILSTFLPAFLKACPGPDGWHYLFGNFRLGGTLSGRLSSNNPNLQNIPS------- 564 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 ++ ++ ++ C A G V D +E R+ A + K Sbjct: 565 ------------SAGGPLKSRLAKLIKECFEAPPGWLFVGLDFDSLEDRISALQTKDPEK 612 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 LK + G D + F + + Sbjct: 613 LKVYTDGYDGHSLRAYGYFGDQMPDIDP------------------------------SS 642 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 +++ + K + A F Q + F + ++ +++ + Sbjct: 643 VDSINSIAKKYKPLRQESKAPTFALTYQGTFHTLMVNCGFSKEKAQDIENKYKKMYKVSI 702 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E + + EQ +G +A R + + + R+ Sbjct: 703 EF---VEKKLEQATRDGYITVAFGLRVRTPLLAQTILGTNKTPKEA--------AAEGRT 751 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 N + + + + + + ++ K +HD D Sbjct: 752 AGNAMGQSYCMLNSRA-----------ASEFMKKVRVSKHKLDIKPCAHIHDAQYYLVRD 800 Query: 639 TDEFNASMLYHLMTSNPSWAKG 660 L + +W Sbjct: 801 GAYEALMFLNEHLPKAVAWQDD 822 >gi|289674484|ref|ZP_06495374.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5] Length = 141 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 43/173 (24%), Gaps = 44/173 (25%) Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + ++ V + + GR Sbjct: 2 DRYFARYPGVLNYMERTRAQAAE--------------------------QGFVETIFGRR 35 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AG 621 L D+ + + R +Q + DI+ + M+ Sbjct: 36 LYLPDINAKNQ---SLRKGAERMAINAP------MQGTAADIIKKAMVAVNGWLDESGLD 86 Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE+V E + + M+ A +PL E + Sbjct: 87 ARVILQVHDELVLEVREDLVDQVSEQIRPHMSGAAQLA--VPLLVEVGVGNNW 137 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 8/89 (8%), Positives = 20/89 (22%), Gaps = 5/89 (5%) Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + N+ + E + G +++ L + Sbjct: 1 ADRYFARYPGVLNYMERTRAQAAEQGFVETIFGRRLYLP-----DINAKNQSLRKGAERM 55 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKN 556 G A K+ V + + Sbjct: 56 AINAPMQGTAADIIKKAMVAVNGWLDESG 84 >gi|289806032|ref|ZP_06536661.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 142 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 51/144 (35%), Gaps = 6/144 (4%) Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---- 256 A+ H ++ + + +L+++ + + ++L+T LF + G+ T Sbjct: 1 PAVLHKHSEEITLRLAELEKKAHDIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAP 59 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T + VL P + R ++ + L +N T + T Sbjct: 60 STSEEVLEELALDYPLPKVILEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTAT 118 Query: 317 GRWSGCVFPPQNLPRPSRSHEELD 340 GR S QN+P + + Sbjct: 119 GRLSSTDPNLQNIPVRNEEGRRIR 142 >gi|48696474|ref|YP_024516.1| putative DNA polymerase [Staphylococcus phage K] gi|46394851|gb|AAO47535.1| ORF86/ORF88/ORF90 [Staphylococcus phage K] Length = 1072 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 70/636 (11%), Positives = 148/636 (23%), Gaps = 190/636 (29%) Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L ++ L+ + + + N L Y GD V Sbjct: 451 GLSDYAKSYTLN----TAINLINEYRDVKDVVNDIDGGNFNYDWFPIELMHPYASGDTDV 506 Query: 168 TREIFKRLEPLSSKEQELWYL-------------DQTINDRGYCVDVALAHTLNQIVDVE 214 R I + ++ + I G D+ ++ + E Sbjct: 507 CRRIHCDVIKKLKEQDRPKSMHLLEVNYPRLTKSLARIESNGLYCDLDYMKENDESYESE 566 Query: 215 RTKLDQELESLTYGLVSS----------------------------------------SR 234 K + Sbjct: 567 MAKNHATMREHWAVKEFEEYQYNLYQMALEEHEKKPKDRDKDIHQYRDKFKDGKWMFSPS 626 Query: 235 CLEKLKTWLFLETG--LHLED---LTETTCQRVLS----------------------SNK 267 + ++ G L + + V K Sbjct: 627 SGDHKGRVIYDILGIQLPYDKEYVKEKPFNANVKEADLTWQDYKTDKKAIGYALDNLELK 686 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + +++ L+ +N R + T R S Q Sbjct: 687 DDVKELLELLKYHASMQTKRNSFTKKLLNMINKQKRTLHGSFSETGTETSRLSSSNPNLQ 746 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEA 386 NLP + + D ++ ++ E L+ +D + +E Sbjct: 747 NLPAHTSDVNKFD-------------------YKHPIKRSFVSRFENGVLLGSDYSALEM 787 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++ + L++F GED++ T + +N +VTK++R A Sbjct: 788 RIIGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEVTKEERQ--------------AT 833 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 G + +FA + E + Sbjct: 834 KAVNFGLAFGESPFSFAGKNNMEVS------------------------------EAEEI 863 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + + Q V + +H+ +Q G R Sbjct: 864 FEKYFQTKPSVKTSIDNVHEFVQQY---GYVDTMHGHRRF-------------------- 900 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKA 620 + + +S + R+ I+Q + + + + Sbjct: 901 ------IRSAQSTDKKIKNEGLRQS------FNTIIQGSGSFLTNMSLTYLDDFIQSRNL 948 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNP 655 ++ TVHD I+ + P + + + H+M + P Sbjct: 949 KSKVIATVHDSILIDCPPEEAKIMAKVTIHIMENLP 984 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 45/179 (25%), Gaps = 35/179 (19%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----------VHDPVMPQ 55 D ET S K G ++ + + + + + Sbjct: 220 DLETNSLKP-DKEGSKP-------LVLSLSWRNGQGVTIPLYKSDFNWENGQDDIDEVLE 271 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS-----NGLPSALK 110 +LK L + + VAHN ++ L + N T V L Sbjct: 272 LLKNWLASKEDIKVAHNGKYDIKFLMSTENFK-DFESIQDTKVGWYLAVTQEVKESLRLS 330 Query: 111 AVGEALK--------LSSQKMEEGKELIARFCKGETHECLYDRNKP--NHREAWRLFGE 159 + + L K+ +L+ F ++ + + E Sbjct: 331 DLAYEVTDVGGYDKPLEDFKLWFVTKLLRFFSDKIKEIQKENKKIAKKEYDVKAPEYKE 389 >gi|18640489|ref|NP_570330.1| DNA polymerase [Synechococcus phage P60] gi|18478719|gb|AAL73268.1| DNA polymerase [Synechococcus phage P60] Length = 587 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 79/525 (15%), Positives = 130/525 (24%), Gaps = 129/525 (24%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M L D ET I C A D D +D D + E Sbjct: 1 MK-LAFDIETDGLIPDLTIIHCIVARD---------IDTDEEFRFDGTGDYPSIKEGLEL 50 Query: 61 LENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARS----------------- 102 L + + HN ++ ++ P TL+L+R Sbjct: 51 L-SKADELWGHNIVNYDYPAIQKLHPDWTPPSCTRDTLILSRLFFTDLLDRDFRSRPALM 109 Query: 103 ---NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 +L+A G L K E GK L + E Sbjct: 110 PGNLYGRHSLEAWGHRLGH--HKSEFGKSLEGDWSTYSP-----------------EMLE 150 Query: 160 YCKGDVTVTREIFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 YC DV V+ + K P E E+ + G+ DV A L + Sbjct: 151 YCARDVEVSVALAKTFVPKIPEYQWSVDTEHEIARIMSWQEQMGFPFDVRAAQALEGKLR 210 Query: 213 VERTKLDQELESLTYG--------------------------LVSSSRCLEKLKTWLFLE 246 +E L ++ + + + Sbjct: 211 LELDTLSDDMRETFHFVDGGVMTPKRSNKVRHYFENAPFCKLREFNPTSRHHIAWAFEHH 270 Query: 247 TGLHLE----DLTETTCQRVLSSNKKLTPQA-IQVFNNRMRASRSAVLKLNTLVEAMNSD 301 G + +L A ++ + + + K N ++ Sbjct: 271 RGWEPKERTAGGQPKIDDEILREINTKESLAFARILELQKHLGQLSEGK-NAWLKLERK- 328 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 GRL + + TGR + +P Sbjct: 329 GRLHHSCVLN--TNTGRQAHMRPNLAQVPSAHEY-------------------------- 360 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 RS S+ V +D +G+E R L + G + A Sbjct: 361 ---RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTAL 410 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 A++ R GK + L Y GG A + + + + Sbjct: 411 AEIYGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 455 >gi|313892512|ref|ZP_07826101.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E] gi|313119091|gb|EFR42294.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E] Length = 626 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 95/743 (12%), Positives = 192/743 (25%), Gaps = 195/743 (26%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHPVELWDCVHDPVMPQVLKEALE 62 L D ET +D T + + + V+ + Q L + Sbjct: 2 LIFDIETNGLLDTTT----------QIHCMSILDTHNLEVQAYRPWEIKEGIQRLMHEIN 51 Query: 63 NTDVTIVAHNS-YFERTVLKACFNLDIPIHR-----WICTLVLARSNGLPSALKAVGEAL 116 N TI HN F+ ++ + + I + I TLV+AR + + Sbjct: 52 NDG-TICGHNIISFDIPAIEKLYPKEFHIQKEKHTHIIDTLVMARLLNSNIQEQDLIRYR 110 Query: 117 KLSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKR 174 K G L A + + Y + E + EY K DV VT ++K Sbjct: 111 KKELAGNLIGSHSLKAYGHRLGILKGTYAEDNEEAWEVYNEDMLEYNKQDVRVTYALYKS 170 Query: 175 LEPLSSKE-------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES--- 224 + + +L + + G+ D+ A L + + ++D ++ + Sbjct: 171 FQDRIKGMEQAILLEHKAQWLMTKMEENGFPFDIPDALKLVKTLRQRAEEIDTQISAVVP 230 Query: 225 -----------------------LTYGLVSSSRCLEKLKTWLFLETGLHLED-------- 253 + + ++++ + Sbjct: 231 KIPDKVFTPKRDNKRLGYKKGVPIQRYKPFNPNSRQQIEWIFRTHYNYTPDKADLYTEEG 290 Query: 254 --LTETTCQRVLSSNKKLTPQAIQV---FNNRMRASRSAVLKLN---TLVEAMNSDGRLR 305 + + + ++K A ++ F R+ + + ++ + SDG++ Sbjct: 291 RLKIDESTFEYIEKDEKAPQGAKKIAPLFEERLMLCKRLGQLADGKQAWLKHVKSDGKIH 350 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 G + G + TGR + +P + R Sbjct: 351 GRVNPNG-TVTGRATHSNPNVAQVP------------------------HVGTPYGEECR 385 Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 +G D G+E R LA K K + + Sbjct: 386 KLFNVPQGWTQAGIDACGLELRCLAHYLSPYDKGKYA------HEVVHGDIHTSNQKAAG 439 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 R + K A Y G Sbjct: 440 LATRNLAKTFIYAFLYGAG----------------------------------------- 458 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + +KK + + + L ++ +A +T + I +++ Sbjct: 459 ---DLMIGELVGGKEKEGKAIKKKFFKATPSIKLLKEDIEKALIKTRIYNRKIQWKRK-- 513 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 L GR L R + + ++Q+ Sbjct: 514 -------------YLRGLDGRKLYVRSIHS---------------------ALNLLLQSA 539 Query: 606 SRDILAEGMM----NATKAGYD--------IVLTVHDEIVCETPDTDEFNA--SMLYHLM 651 I ++ T+ GY ++ VHDE + + M Sbjct: 540 GALICKYWIVRTEERLTQRGYKHGWNGDFVLMAWVHDEGQYACRTEEIADVVIHEAQEAM 599 Query: 652 TSNPS-WAKGLPLKAEGYESKRY 673 + + L EG + K + Sbjct: 600 RDTQKHFKFRVQLDTEGKKGKNW 622 >gi|325842751|ref|ZP_08167786.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1] gi|325489551|gb|EGC91916.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1] Length = 330 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 67/450 (14%), Positives = 127/450 (28%), Gaps = 128/450 (28%) Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++LK L E G+ + + + L ++ + ++ Sbjct: 4 DNLNSSKQLKQSL-QEMGIPVTSVQ----EGKLKLFSSKYSIVDEIVRY-KKYNKLVTTY 57 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L ++ DGRLRG +G ++T R S Q++P+ Sbjct: 58 GDKLKNQLSKDGRLRGHWNLIG-TKTSRMSCQKPNFQSIPK------------------- 97 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 ++ A E ++ D + IE R+LA + Q + AF G DL+V Sbjct: 98 ------------EMKKYFQAEEENVFIIMDYSTIELRILAEITNCQKLIDAFNAGADLHV 145 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T N ++ +R +GKV+ L Y ++ Sbjct: 146 ETAKAILNQ--ESISDSERKLGKVVNFGLIYGLTPFGLKE-------------------- 183 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 E + + + V++ + + Sbjct: 184 ------------------KINAIPGFNISEYKAEEFIANYFKMYPEVAKYQQQQQYS--- 222 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + + K R Sbjct: 223 ----DIITTLGGSYWDNTNGLDRLKP---------RQRY--------------------- 248 Query: 591 YTYGGKLTENIVQAVSRDILAEGMM---NATKAGYDIVLTVHDEIVCETPDTDEFNASM- 646 VQA + L E + + + +V +HDEI+ E P+T+ A Sbjct: 249 --------NYAVQASCAEGLKESLALFCKLKQDKWKLVSAIHDEIIIEVPETEALTAKEC 300 Query: 647 LYHLMTSNP-SWAKGLPLKAEGYESKRYRK 675 L M K +P++ SK ++K Sbjct: 301 LKQAMIDGMGKLVKKIPIEVSVNISKTWKK 330 >gi|237651592|ref|YP_002899062.1| DNA polymerase [Roseophage DSS3P2] gi|220898062|gb|ACL81320.1| N4 DNA pol-like protein [Silicibacter phage DSS3phi2] Length = 876 Score = 124 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 92/746 (12%), Positives = 177/746 (23%), Gaps = 187/746 (25%) Query: 1 MAT-LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVHDPVMPQVL 57 M L D E S L D + F +D + D VL Sbjct: 178 MDVDLSCDIEGFS---LKHY-------DAGIGTITFCWDQHNGIAFEVDNTKTKAEDHVL 227 Query: 58 KEAL-------ENTDVTIVAHNSYFERTVLKACF-------------NLDIPIHRWICTL 97 ++AL T ++ HN ++ VL LD+ + W CT Sbjct: 228 RQALKTFFYRYRATGRRMIYHNICYDAYVLIYQLFMDHILDQEGFLEGLDVMLENWECTQ 287 Query: 98 VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 ++ + G L L +Q + + + + Sbjct: 288 LITYL----ATNSCAGNELGLKAQ------------AQEFAGNYAVEDIQDITQIELPKL 331 Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTL 207 EY D T ++ + +Q + + G V++ L Sbjct: 332 LEYNLVDGLSTWFVYNKHYQTMINDQQFEIYTGLFKDAVKDIIQMQLTGLPVNMDKVIKL 391 Query: 208 NQIVDVERTKLDQEL----------ESLTYGLV--------------------------S 231 N + E ++ L + Sbjct: 392 NDQLGAESEHNVWKMLQTKIVQGFVYQLEENALKKKNEKLKTKVVTRVDLGSTQDLMVAF 451 Query: 232 SSRCLEKLKTWLF--LETGLHLEDLT----ETTCQRVLSSN-----KKLTPQAIQVFNNR 280 + +L+ L+ GL + DLT +T L + T + + + Sbjct: 452 NPGSAPQLQRLLYSDEFLGLPVLDLTDSGLPSTGADTLEKLLNQNISEETKEFLNILLEY 511 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTL--QFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 ++ L ++A LG + +GR S QN+P Sbjct: 512 KASAIILSTFLPAFLKACPGPDGWHYLFGNFRLGGTLSGRLSSNNPNLQNIPS------- 564 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 ++ ++ ++ C A G V D +E R+ A + K Sbjct: 565 ------------SAGGPLKSRLAKLIKKCFEAPPGWLFVGLDFDSLEDRISALQTKDPEK 612 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 LK + G D + F + + Sbjct: 613 LKVYTDGYDGHSLRAYGYFGDQMPDIDP------------------------------SS 642 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 +++ + K + A F Q + F + ++ +++ + Sbjct: 643 VDSINSIAKKYKPLRQESKAPTFALTYQGTFHTLMVNCGFSKEKAQDIENKYKKMYKVSI 702 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E + + EQ +G +A R + + Sbjct: 703 EY---VEKKLEQATRDGYITVAFGLRVRTPLLAQTILGTNKT----------PKEAAAEG 749 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYDIVLTVHDEIVC 634 + +E M K +HD Sbjct: 750 RTAGNAMGQSFCMLNSRAASEF-------------MKKVRASKHKLDIKPCAHIHDAQYY 796 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKG 660 D L + +W Sbjct: 797 LVRDGAYEALMYLNEHLPKAVAWQDD 822 >gi|313813473|gb|EFS51187.1| hypothetical protein HMPREF9587_01282 [Propionibacterium acnes HL025PA1] Length = 112 Score = 124 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 11/112 (9%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET SP L K G+ YAE D +++F + D PVE+ D +P + Sbjct: 1 MRQIAIDIETFSPAPLAKTGVYPYAEHPDFRLLIFGYSIDGGPVEVVDLASGGGLPDEVL 60 Query: 59 EALENTDVTIVAHNSYFERT----VLKACFN-----LDIPIHRWICTLVLAR 101 AL + V AHN+ FER L+ + + +W CT+V + Sbjct: 61 AALVDPGVVKWAHNAAFERVALSAWLQRHYPELLAAGFLDPSQWRCTMVWSA 112 >gi|194901634|ref|XP_001980357.1| GG17101 [Drosophila erecta] gi|190652060|gb|EDV49315.1| GG17101 [Drosophila erecta] Length = 2037 Score = 124 bits (310), Expect = 6e-26, Method: Composition-based stats. Identities = 88/668 (13%), Positives = 187/668 (27%), Gaps = 125/668 (18%) Query: 30 VILFAFGFDDHPVELWDCVHDPVM----------PQVLKEALENTDVTIVAHNSYFERTV 79 + +F D+ + +D Q L + L D+T+V H+ + + Sbjct: 1465 ISGVSFSLADNVAYYMNMQNDGRATGQGVPTILKVQELCKLLARKDLTLVMHDGKEQLKM 1524 Query: 80 LKACFNLDIPI-HRWICTLVLARSNGLPSAL--KAVGEALKLSSQKMEEGKELIARFCKG 136 L I + V + + E L G Sbjct: 1525 LLKAIPQLQKISAKLEDPKVANWLLQPDRTMSFADMCRTF------APECTALADICGSG 1578 Query: 137 ETHECLYDRNKPNHREAWRLFGEYC------KGDVTVTREIF--KRLEPLSSKEQELWYL 188 + + R E C KG I + L+ E L Sbjct: 1579 RGYSSYGLDSASAILPKIRTSIEACVTVHILKGQTENLGRIGSGQLLKFFHDLEMPLQLT 1638 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G+ L L Q + KL+ ++ + + + L L Sbjct: 1639 LCHMEFVGFPAQQQLLQQLYQKMVAVVRKLETKIFEQHGSR-FNLGSSQAVAKVLGLHRK 1697 Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 ++ T ++VL TP + + R + + + L++ +D R Sbjct: 1698 INGRVT---TSRQVLEKL--NTPISHMILGYR-KLAGLLAKSIQPLLKCCQAD---RIHG 1748 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 Q + + TGR S QN+ + ++ R Sbjct: 1749 QSITYTATGRISMAEPNLQNVAK------------------EFCIQVGSDAVNISCRLPF 1790 Query: 369 -IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + E + L+ AD +E R+LA ++ ++ LK + +DL++ A + ++V+++ Sbjct: 1791 MLKDEDRCLLSADFCQLEMRILAHLSQDKGLLKVMNSSQDLFIAIAAHWNKIEESEVSQN 1850 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K + + Y G ++ + LN + + + + + + + + Sbjct: 1851 LRNSTKQVCYGIVYGMGMRSLAE-----SLNCSEEEARLISEQFHQAYTGIREYTMRVVK 1905 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + G R+ ++ L E+ A Sbjct: 1906 FARNQGFVETITGR---------RRYLDNINSDQEHLKNQAER--------QAINSTIQG 1948 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 L + R +G+ Sbjct: 1949 SAADIAKSAILKMEKNLERYRDKLGLGDKSV----------------------------- 1979 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 D++ + L HDE++ E P + + + M + +PL+ + Sbjct: 1980 DLV-------------MHL--HDELIFEVPAAKSKKIAKVLSVTMQNCVK--LTVPLQVK 2022 Query: 667 GYESKRYR 674 + + Sbjct: 2023 LRIGRSWG 2030 >gi|315106932|gb|EFT78908.1| hypothetical protein HMPREF9601_00873 [Propionibacterium acnes HL030PA1] Length = 112 Score = 124 bits (310), Expect = 8e-26, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 11/112 (9%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET SP L K G+ YAE D +++F + D PVE+ D +P + Sbjct: 1 MRQIAIDIETFSPAPLAKTGVYPYAEHPDFRLLIFGYSIDGGPVEVVDLASGGGLPDEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD---------IPIHRWICTLVLAR 101 AL + V AHN+ FER L A + +W CT+V + Sbjct: 61 AALVDPGVAKWAHNAAFERVALSAWLQRHHPELLAAGFLDPSQWRCTMVWSA 112 >gi|50725504|dbj|BAD32974.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group] gi|50725832|dbj|BAD33362.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group] Length = 551 Score = 123 bits (309), Expect = 8e-26, Method: Composition-based stats. Identities = 49/345 (14%), Positives = 85/345 (24%), Gaps = 82/345 (23%) Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + L +GR+ +L + TGR S QN P Sbjct: 279 LCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNIN--TETGRLSARTPNLQNQP---- 332 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 L+ +R +A+ G L+VAD +E R+LA + Sbjct: 333 ---------------------ALEKDRYKIRHAFVAAPGNTLIVADYGQLELRILAHLTN 371 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L+AF+ G D + T + V + K + Sbjct: 372 CKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEE------------------KKVLLEWHPQ 413 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G + L A NF + + + K W + Sbjct: 414 PGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWKVSVREARDTLKLWYRDR 473 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 VS + + E GRS + ++ Sbjct: 474 KEVSAWQKKQKAFALEKCEVY--------------------------TLLGRSRQFPNMT 507 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + R VQ + D+ M+ + Sbjct: 508 HAGPGQKGHV---ERAAINAP------VQGSAADVAMCAMLEIER 543 >gi|308516943|emb|CBW47048.1| N4 DNA polymerase-like protein [Roseovarius sp. 217 phage 1] Length = 874 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 87/688 (12%), Positives = 177/688 (25%), Gaps = 156/688 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------DPVMPQVL 57 L D E S L D V F ++ H ++ + DPV+ Q L Sbjct: 181 LTCDIEGFS---LKHF-------DAGVGTITFCWNQHEGIAFEVDNTRTKEEDPVIRQAL 230 Query: 58 KEAL---ENTDVTIVAHNSYFERTVLKACF-------------NLDIPIHRWICTLVLAR 101 K + ++ HN ++ VL LD+ + + T ++ Sbjct: 231 KTFFYRFRESGRKMIYHNICYDAYVLIYQLFMDHILDQEGLLEGLDVMLENFEDTQIITY 290 Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + G L L +Q + + K EY Sbjct: 291 L----ATNSCAGNELGLKAQ------------AQEFAGNYAVEEIKDITLIDLDKLLEYN 334 Query: 162 KGDVTVTREIFKRLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D T ++ + +E + G V++ L++++ Sbjct: 335 LVDGLSTWYVYNKHYQTMITDLQLGTYENFKEWVVDIIQMQLTGLPVNMDKVVALDKLLT 394 Query: 213 VERTKLDQELESLTYGLVSS------------------------------------SRCL 236 E ++ Sbjct: 395 AESEHNIWKMMQTKIVQGFQYQLEEEALAKKNAKLKTKTVTRKDLGLTKDLEVAYNPGSA 454 Query: 237 EKLKTWLFLE--TGLHLEDLT----ETTCQRVLSSN-----KKLTPQAIQVFNNRMRASR 285 +L+ L+ + GL + DLT +T L + T +++ ++ Sbjct: 455 PQLQRLLYSKEFLGLPVLDLTDSGLPSTGADTLEKLLNQNISEETKDFLKILLEYKASAI 514 Query: 286 SAVLKLNTLVEAMNSDGRLRGTL--QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 L ++A LG + +GR S QN+P Sbjct: 515 ILSTFLPAFLKAHPGPDGWHYLFGNFRLGGTLSGRLSSNNPNLQNIPS------------ 562 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 ++ ++ ++ C A G V D +E R+ A + KLK + Sbjct: 563 -------SAGGPLKSRLAKLIKECFEAPPGWLFVGLDFDSLEDRISALQTKDPEKLKVYT 615 Query: 404 TGEDLYVTTYARSFNVAPAQVTK--------------DQRAIGKVMELALGYQGGAKAFQ 449 G D + F + R K AL YQG Sbjct: 616 DGYDGHSLRAYGYFGDQMPDIDPSSVESINSIGKKYKPLRQESKAPTFALTYQGTYHTLM 675 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 + + + N + + + ++ E + G Sbjct: 676 QNC-----GFSKEKAQMIENKYRQMYSVSIDYVNEKLEQATHDGYITVAFGL-------- 722 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 R + + + ++ ++ G+ + ++ + + + S L Sbjct: 723 -RVRTPLLVQTILGTNKTPKEAAAEGRTAGNAMGQSYCMLNSRAASAFMKKVRRSSHRLD 781 Query: 570 YR---DVGNNRSYLNTTTRQLTREYTYG 594 + + + + YL + Y Sbjct: 782 IKPCAHIHDAQYYLVRDGAFDSLVYINT 809 >gi|312377443|gb|EFR24272.1| hypothetical protein AND_11228 [Anopheles darlingi] Length = 2035 Score = 122 bits (307), Expect = 2e-25, Method: Composition-based stats. Identities = 64/507 (12%), Positives = 132/507 (26%), Gaps = 96/507 (18%) Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 + + G+ VD L + + R ++ + L G + Sbjct: 1603 MPVHVVLARSEVVGFPVDRTALGALIERLKASRERIATDARLLNGGRKLDFGSSRAVAAA 1662 Query: 243 LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 L L T ++VL P A V R S A + L + Sbjct: 1663 LRLAASRERPR----TVRQVLERLDN--PLAALVIAYRKIDSNLART-IEPLYRTIQLSA 1715 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 R + + TGR + Q + + + L + + Sbjct: 1716 ESRVHGRSHCFTSTGRITMHEPNLQTV-------VKDFTVPAPLAGGMRERRTTDEEEHF 1768 Query: 363 CVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAF------------ETGEDLY 409 RS ++ + L+ AD +E +L ++ ++ L A +D++ Sbjct: 1769 SCRSTFACNDTTRVLLSADFCQLELCILTHLSQDRRLLAALDGSAVADGAGSRRKPQDVF 1828 Query: 410 VTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + AR + ++V+ + R K + + Y GA+A L + + Sbjct: 1829 RSLAARWHQLGDASEVSDELRTRTKAIVYGVIYGMGARAMAAE-----LQMEEESARSLM 1883 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + D + + + + G R+ + + A Sbjct: 1884 EQFHRSYPDIRRYQERVIRLTRQLGYIETLTGR---------RRYLPAIGQAATADPAAR 1934 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 + + S + + Sbjct: 1935 AEAERQAVCTTIQG-----------------------------------SAADILKNAIV 1959 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY 648 R K D+ +VL +HDE+V E P + + Sbjct: 1960 RMERNLRKY---------ADV-------LDVGAIQLVLHLHDELVYELPRAQLPKVAKIL 2003 Query: 649 H-LMTSNPSWAKGLPLKAEGYESKRYR 674 M + +PL+ + + Sbjct: 2004 RSSMENCAK--LSVPLRVKLKAGDSWG 2028 >gi|156122488|gb|ABU50235.1| DNA polymerase [Synechococcus phage S-CBP42] Length = 588 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 85/566 (15%), Positives = 143/566 (25%), Gaps = 133/566 (23%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M L D ET + C A+D D + V +D D + Sbjct: 1 MR-LAFDIETDGLLRNLTKIHCIVAQD---------LDTNEVYKFDGTGDHPSIREGLAL 50 Query: 61 LENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARS----------------- 102 L++ D + HN ++ +K F TL+L+R Sbjct: 51 LKDAD-ELWGHNIIGYDFEAIKEVFPRWNYSSTVYDTLILSRLFFTDLLDRDFRSRPANM 109 Query: 103 ---NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 +L+A G +LS K E GK L + + Sbjct: 110 PAQLYGRHSLEAWG--HRLSVHKSEFGKSLSGDWSTYSP-----------------EMLD 150 Query: 160 YCKGDVTVTREIFKR-------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 YC DV V+ + + S E L + G+ DVA A L + Sbjct: 151 YCARDVVVSVSLARLFTAKVAEYRDCISTEHRLATIMAWQESEGFPFDVAKAERLEGQLR 210 Query: 213 VERTKLDQELESLTYG--------------------------LVSSSRCLEKL---KTWL 243 E KL +++ + + + Sbjct: 211 SELLKLSEQMRETFPYVDGGSFTPRTNNGPRGYVKGAAMCRLKEFNPTSRQHIAWAFATF 270 Query: 244 FLETGLHLEDLTETTCQR--VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 L D + +L ++ + + N ++ + SD Sbjct: 271 RDWEPKELTDTGKPKIDETTLLEYGTDEAKTFARILELQKHLGQL-SEGANAWLKKVESD 329 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 GR+ + + TGR + +P Sbjct: 330 GRIHHSCVLN--TNTGRQAHMKPNLAQVPSGHEY-------------------------- 361 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 R + V AD +G+E R L A G + A Sbjct: 362 ---RELFHPGANRSQVGADASGLELRCLGHYL-------ARFDGGKFAKEVVQGDIHTAL 411 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 A++ R GK + L Y GG A + + K + Sbjct: 412 AEIYGTDRKSGKGVTYCLIYGGGDSKLGLTA-----GASKAQAVKKGKEIRSRIMANLDG 466 Query: 482 CRWMQENHPEHAIEDLFIGTACERVK 507 + E A + G ++ Sbjct: 467 FAALNAAVQERAKSGVLKGLDGRPIR 492 Score = 42.0 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 6/60 (10%) Query: 597 LTENIVQAVSRDILAEGMMN----ATKAG--YDIVLTVHDEIVCETPDTDEFNASMLYHL 650 ++Q+ I ++ +AG Y + VHDE+ + A L + Sbjct: 500 ALNYLLQSAGAVICKLWLLRSYELLDEAGIDYFPMAFVHDEVHISVAPSQAEQAGQLIQI 559 >gi|167565000|ref|ZP_02357916.1| DNA polymerase [Burkholderia oklahomensis EO147] Length = 619 Score = 121 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 92/704 (13%), Positives = 170/704 (24%), Gaps = 203/704 (28%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP------Q 55 L D ET + E + + A G V HDP P + Sbjct: 7 DILTWDLETDGLL----------RELTRIWVLAIGTVGSDVITTYTDHDPNYPPLMEGVE 56 Query: 56 VLKEALENTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L + T AHN F+R L ++P + TLV+ R E Sbjct: 57 RLMAHVARGGKTA-AHNGINFDRKALAKVTGYEMPYTAILDTLVMGRLAEP--------E 107 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L G +L + + + + YC+ D+ VT ++K+ Sbjct: 108 RLG--------GHKLESYGIEM----GILKGSHNEWDRYSEEMRSYCEQDIAVTNALYKK 155 Query: 175 LEPLSSKEQEL-------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 LE + + + + +D + G+ +++ A TL + R E++ + Sbjct: 156 LERVQTWGESCDLEHTVAYLIDLQM-TNGFPLNMREAMTLAAQLWERRDGYLAEMQRVFP 214 Query: 228 G--------------------------------LVSSSRCLEKLKTWLFLETGLHLE--- 252 + + L + G Sbjct: 215 PIYVSAGAVTPKRTMKREGREYTAGAPYTKIVLQEFNPGSEYHVANRLKRKYGWRAPLTE 274 Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNN------RMRAS---RSAVLKLNTLVEAMNSDGR 303 + VL P+ + + + + + + + + R Sbjct: 275 KGNPNITEAVLKKL--DFPEVQPLLHFARVDKQWTQLASPPKKNGTGG-GWIHHADENHR 331 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + G + GA TGR + N+ Sbjct: 332 VHGYVNSNGA-VTGRMTHSRPNSANI-------------------------------DKE 359 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R I S G K V D G+E RVLA + D + +V Sbjct: 360 MRHIWIPSMGMKQVGCDAEGLELRVLAHYLARYDGGRLTRQLLDGDKALGTDAHSVNRDN 419 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 R K + Y G + A + + + Sbjct: 420 TDLFSRDGAKTLLYGSLYGAG---------------DEKAGNIWIADWRTSGKPVSEWPV 464 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 W + + + + +L ++ A + Sbjct: 465 WCHVRGKLKTAKAIGRVVKAKLLDGIV-----GFRKLIKDIETAAKS------------- 506 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 L GR + R ++Q Sbjct: 507 -------------RGWLKGIDGRRIRVRHAHA---------------------ALNTLLQ 532 Query: 604 AVSRDILAEGMMNATKAGYDI-----------VLTVHDEIVCET 636 I+ + + +I + VHDE+ E Sbjct: 533 GTGAIIMKKALAIYHAEITEIHGLVHGVHFGYLANVHDEVQQEC 576 >gi|282599434|ref|YP_003358324.1| N4 gp39-like protein [Pseudomonas phage LUZ7] gi|259048533|emb|CAZ66183.1| N4 gp39-like protein [Pseudomonas phage LUZ7] Length = 875 Score = 120 bits (302), Expect = 6e-25, Method: Composition-based stats. Identities = 74/596 (12%), Positives = 137/596 (22%), Gaps = 143/596 (23%) Query: 3 TLFIDFETRS----PIDLTKCGICKYAEDVCVILFAFGF----DDHPVELWDCVHDPVMP 54 L D E S + G D + + + C + M Sbjct: 189 ELTCDIEAFSLSMFDSGIATIGFAWSQHDA--VQIQVDYQEMAEPSGGLYGYCETNEPMR 246 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACF-------------NLDIPIHRWICTLVLAR 101 VL+ E ++ H + F+ VL L+I T V+A Sbjct: 247 DVLRWFFEQYKGQLIYHKANFDVKVLIYQLYMAHDLDKVGMLRGLEIMCRGMQDTKVVAY 306 Query: 102 S-NG----LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156 +LK +G+ D K + Sbjct: 307 LALNSTSSPSYSLKDLGQEH--------------------AGDWSQGDDIKDIRKIPLDQ 346 Query: 157 FGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHT 206 EY D T ++ + P+ E + G + Sbjct: 347 LMEYNAVDAVTTMYVWNKYYPVMVAEKQDQLYHGLFMESQEMIIHTELVGMPMCPKRLAE 406 Query: 207 LNQIVDVERT-------------------------------KLDQELESLTYGLVSSSRC 235 + + R K Q+ + + Sbjct: 407 VETELTKLRDGYFNTIMQDPMVHRTTLLLREEAMVKKNATLKTIQKTIDDFSHIEFNPGS 466 Query: 236 LEKLKTWLFLETGLH----LEDLTETTCQRVLSSN--KKLTPQAIQVFNNRMRA---SRS 286 + L GL T L+ + + + Sbjct: 467 GPQKALLLHKVIGLPVLDKTPTGQPATGGDELTKLIRHPAGASFKGLLQAMIDLDRVQKI 526 Query: 287 AVLKLNTLV-EAMNSDGRLRGTLQFL-GASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + + +DG L F G + +GR S QNLP S + Sbjct: 527 LSAFIPAFKAGRLKADGMLYLHGSFNLGGTISGRLSSSDPNMQNLPSGSAYGK------- 579 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 ++S +A++G AD A +E R+ A + + K+K + Sbjct: 580 ------------------LIKSIFMAAKGYLFGGADFAALEDRINALLTRDPNKIKVYTD 621 Query: 405 GEDLYVTTYARSFNV-------------APAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 G D + + + + R K L Y G M Sbjct: 622 GYDGHSMRTFAFWPEKCIGIVDTVSSINSIQHIYPGLRGEAKAPHFLLQYGGSW-----M 676 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + ++ + + + ++ + + L G Sbjct: 677 GLVKNVGFAEDEAKRIEDNYHKLYSVSADWVATEIQKATKQGYVQLAFGLKLRTPL 732 >gi|32442297|gb|AAP82219.1| DNA polymerase [Podovirus GOM] Length = 397 Score = 120 bits (301), Expect = 7e-25, Method: Composition-based stats. Identities = 64/414 (15%), Positives = 115/414 (27%), Gaps = 120/414 (28%) Query: 95 CTLVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 TLV++ + +L+A GE L S + L Sbjct: 1 DTLVMSSLSNPNREDGHSLRAWGERLGFSKGDHTDWTRLTP------------------- 41 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE--------QELWYLDQTINDRGYCVDVA 202 +YC DV VT ++++ L E+ + G+ +D+ Sbjct: 42 -----DMEKYCVRDVEVTEKLYQHLLKELDGFDVSSIELEHEVQRITARQVRLGWLLDLK 96 Query: 203 LAHTLNQIVDVERTKLDQELESLT------------------------------------ 226 AH L ++ ++ +L+ +++ Sbjct: 97 YAHQLLALLKEKKYELEDKVQDTFRPLPTFIREVTPRCKKDHTLSAVGLKFLGEQWSDVC 156 Query: 227 ------YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276 + +++ +L G TE + VLS + Q+ Sbjct: 157 GPFSRVDCPEFNLGSRQQIGRYL-QHFGWKPTKFTEKGHAIVDESVLSKITDIPE--AQL 213 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + + V ++ + +EA + DGR+ G + GA TGR + +P Sbjct: 214 IAEYLMVQK-RVAQIQSWIEAADDDGRVHGRVNTNGA-VTGRMTHSEPNLAQVP------ 265 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 RSC EG LV D +G+E R+LA G++ Sbjct: 266 ------------------AVRAPYGKECRSCWTVPEGYSLVGFDASGLELRMLAHYMGDR 307 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 + + R K A Y G Sbjct: 308 EYTN---------EILHGDIHTANQHLAGLESRDQAKTFIYAFLYGAGDAKLGT 352 >gi|66392089|ref|YP_239314.1| possible DNA polymerase subunit [Xanthomonas phage Xp15] gi|62529199|gb|AAX84882.1| possible DNA polymerase subunit [Xanthomonas phage Xp15] Length = 640 Score = 120 bits (301), Expect = 7e-25, Method: Composition-based stats. Identities = 79/558 (14%), Positives = 175/558 (31%), Gaps = 75/558 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVC-------VILFAFGFDDHPVELWDCVHDPVM 53 M +D ET + K + + + A V+ D + Sbjct: 1 MKINSLDIETEAVDPAEK--LYAALQPWRLRQGRSRITSIAVCRPGFTVDQIVNRGDNTL 58 Query: 54 -PQVLKEALEN-TDVTIVAHNSYFERTVL------KACFNLD--IPIHRWICTLVLARSN 103 + + + L++ + + AHN+ F+ + + + + +W T +L + Sbjct: 59 WLREMIDLLDSVGNDVVYAHNALFDIAFMIAQLQPRRMGAIPDVLKRVKWRDTGLLTKWL 118 Query: 104 GLPSALKAVGEALKLSSQKMEEGKE-LIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 + + + L++ K+ + F + + + P + E Sbjct: 119 INGQQPETMRFSYSLANLVATFLKDDEMTPFFVKMKSQGVSPGDNPEYCEKRGEL----- 173 Query: 163 GDVTVTREIFKRLEPLSSKEQE--------LWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 D +T ++ +L+ SKEQ G +D ++ Sbjct: 174 -DAIMTLKLALKLQAHMSKEQRTGFLTEQDCLLPVANSWIMGIRIDREQVRRNDKFFSES 232 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLT 270 +T + ++L ++L LF E L + T + L + Sbjct: 233 KTAIAKKL----GLDEGIFTSTKRLPDLLFKEWLLPVISKTPSGNPSCNADTLKLLQYQL 288 Query: 271 PQAIQ--------VFNNRMRASRSAVLKLNTLVEAMNS--DGRLRGTLQFLGASRTGRWS 320 +A + + S + +++EA+ DG + + + G + TGR++ Sbjct: 289 NEAGNTEMADKLGLILEAKQYSTLHSKYVKSMIEALEHTGDGYIYASPRIFG-TYTGRFT 347 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380 + + D + VR +IA EG ++ AD Sbjct: 348 YS--------STTNGKDYEDDNAKTKKFKSAIAVHQIPRRDKMVRKSMIAPEGYEIYEAD 399 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-------------VTKD 427 +G E+R++A + + ++ F + + T A + + Sbjct: 400 ASGQESRLMALRSKDPVMIEIFSKDMNFHSMTGASIIGEDYSDFQVKYKAEGDEGGYYTE 459 Query: 428 QRAIGKVMELALGYQGGAKAFQKMA-STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 QR +GK+ L+ Y+ G KA + A L L + ++ + + Sbjct: 460 QRQLGKLTNLSCNYRIGGKALSQKAFLDYDTFLTVQTGLFLVQTFNRTYKGVPQYWEDVV 519 Query: 487 ENHPEHAIEDLFIGTACE 504 + + F G + Sbjct: 520 WESRKQGYTETFGGRRYK 537 >gi|297242718|ref|ZP_06926656.1| family A DNA-dependent DNA polymerase, putative [Gardnerella vaginalis AMD] gi|296888929|gb|EFH27663.1| family A DNA-dependent DNA polymerase, putative [Gardnerella vaginalis AMD] Length = 96 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 5/96 (5%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L +D ET S ++L KCG+ KYAE D ++LF + D V++ D +P+V+ Sbjct: 1 MENLSVDLETFSSVNLGKCGVYKYAESDDFEILLFGYSVDGSEVQVVDLAQGETIPEVVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACF---NLDIPIH 91 AL + VT A N+ FER L +++ Sbjct: 61 SALTDETVTKWAFNAQFERVCLSRYLRDKGINVNPG 96 >gi|77918409|ref|YP_356224.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380] gi|77544492|gb|ABA88054.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Pelobacter carbinolicus DSM 2380] Length = 593 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 82/669 (12%), Positives = 161/669 (24%), Gaps = 159/669 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 + +D E S + LF+ V +W Sbjct: 10 KVILLDSE-FSQPPGERPTPHCLVAKE---LFS----GKTVRVW-IEKGEQPLAA--PFP 58 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 + + VA+ + E T +P A L + + L Sbjct: 59 TDKNTLFVAYLASAEMTCF-QALGWKLP----------AYVIDLYAEFCLLTNGFFLPRG 107 Query: 122 K-----MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 K + E I + + L R P + +YC+ DV ++K + Sbjct: 108 KGLLGALAYFGEEILDAVEKKDMRELAQRGGPYTEDEKTDLLDYCQRDVLALERLWKHMV 167 Query: 177 PLSSKEQ-----ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 P ++ E I G +D L + +V +T L +EL + + Sbjct: 168 PHLDGDRSLLRGEYMKAVAKIEMTGIPIDTLALADLRENWEVIKTSLIEELGAPYGVYKN 227 Query: 232 SSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + +L + G+ T K P+ + + + Sbjct: 228 GKFKTDLFVQYLKNK-GIPWPLTPTRKPKTDADTFKEMAKCYPELKPLKELQQLLGKLK- 285 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + +DGR R + G +G N P S+ Sbjct: 286 ----LNKLQVGTDGRNR-----YLSGVFGSKTGR-----NQPSNSK-------------- 317 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + + +R V G L D E + ++G++ +A+ +G+ Sbjct: 318 -------CIFGLPSWMRKLVRPGPGNGLAYLDYEQQEFGIAGALSGDEAMRQAYISGDPY 370 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 +A ++ Sbjct: 371 ------------------------------------------LAFAIQAGAAPRGATKES 388 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + A A+ + + R+ ++R + ++ Sbjct: 389 HGDIRSRFKATALGVQYGMGQDRLAMNLNISKGEAKALLDLHRKTYARFWQWQQDIENKA 448 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 G + + T++ Sbjct: 449 LIEGSIGGVLGW--------------------------------------KMRITSKTKD 470 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML- 647 R L +QA ++L + + IV VHD +V E P A + Sbjct: 471 RT------LANFPMQANGAEMLRLAVCLCAERNIKIVAMVHDALVIEAPIAGLEAAKSIA 524 Query: 648 YHLMTSNPS 656 M Sbjct: 525 IQAMKEASE 533 >gi|119952216|ref|YP_950517.1| DNAP [Enterobacteria phage N4] gi|117650935|gb|ABK54408.1| DNAP [Enterobacteria phage N4] Length = 859 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 89/672 (13%), Positives = 175/672 (26%), Gaps = 116/672 (17%) Query: 4 LFIDFETRS----PIDLTKCGICKYAEDVCVILFAFGFDDHPVE-LWDCVHDPVMPQVLK 58 L +D ET S + C + AF D P+E + + + +L Sbjct: 183 LAVDIETFSLKHYDCGIGTITFCWNKHE----GIAFPVDYEPIEGATEAPYGRQVHNMLV 238 Query: 59 EALENTDVTIVA-----HNSYFERTVLKACF-------------NLDIPIHRWICTLVLA 100 ++ HN F+ L + I + W CT ++ Sbjct: 239 RSMLRDFFIKYLNRQMYHNIAFDVYALIYQLFMTDLLDTEGLLHGMSIMLRNWDCTKLIT 298 Query: 101 RSN-----GLPSALKAVGEAL-------KLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 G +LK + +++ EL+ Sbjct: 299 YLATNSCAGNKLSLKDQAQEYAGNYAQEEINDITRIPLAELLEYNLVDGLCTWYVYEKHW 358 Query: 149 NHREAWRLFGEY------CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV-DV 201 + + Y D+ + ++ + + L Q N+ + D Sbjct: 359 DTLVNDQQLDVYTNIFKPACEDI-IQMQLTGMPINMKTVLGVEEALTQDYNNALKTIADS 417 Query: 202 ALAHTLNQIVDVERTKLDQELESLT------YGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 + ++++ E + ++ + +L+ LF L + LT Sbjct: 418 KVIKDFTRLLNEEWVEKQNQILKKKRVTLADAKEQFNPNSGVQLQKLLFEFLELPVLGLT 477 Query: 256 ET----TCQRVLSSNKKLTP-----QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T +L S K T + + + + + L A Sbjct: 478 ASKLPATGSGILKSLKNHTQDTSILEILDALIDYKAVDKILTAFIPALKNARQGPDGWHY 537 Query: 307 TL--QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 LG + +GR S QNLP SR + + Sbjct: 538 LFGNLNLGGTVSGRLSSSEPNLQNLPSGSR-------------------------YAKII 572 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV----- 419 + C A G D A +E R+ A + KLK + G D + F Sbjct: 573 KKCFEAPPGWIFCGLDFASLEDRISALTTKDPNKLKVYTDGYDGHSLRAYAYFGEMMPDI 632 Query: 420 --------APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 + + K R K AL YQG + Sbjct: 633 EDTVESVNSIQEKYKAYRQDSKAPTFALTYQGTYITL-----MKNCGFPEQKARMVEERY 687 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 ++ ++++ + + + + G R + + ++ + + Sbjct: 688 HTLYKVSDDWVQAKLDQAAKDGYVTVAFGL---------RVRTPLLQQVIRGTSKTPYEA 738 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 G+ + L+ + + + S L R + R Sbjct: 739 EAEGRTAGNALGQSWCLLNNRAGSEFMRKVRNSKHRLDIRPSTHIHDAQYFLIRDDMDVV 798 Query: 592 TYGGKLTENIVQ 603 Y VQ Sbjct: 799 IYTNTHLVKAVQ 810 >gi|316995410|gb|ADU79191.1| DNA polymerase [Enterobacter phage EcP1] Length = 865 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 73/587 (12%), Positives = 143/587 (24%), Gaps = 138/587 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL------ 57 L D E S + + +F ++ H + + L Sbjct: 190 LSADIEAWSLK----------FYEARLGTISFAWNQHEGIAFAVDFERNYEDALAIRLLL 239 Query: 58 KEALENTDVTIVAHNSYFERTVLKACF-------------NLDIPIHRWICTLVLARSNG 104 K ++ HN ++ TV+ LD+ W T ++ Sbjct: 240 KGFFTEYKGKMLWHNGSYDLTVIIYELWMNGLLDQKGLLTGLDVMTKNWHDTKIITYL-- 297 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 + G L L +Q D K + Y D Sbjct: 298 --ATNSCAGNHLGLKAQ------------SHEYAGNYALDDIKDISLIPKKDLVRYNLID 343 Query: 165 VTVTREIFKRLEPLSSKEQELWYLD----------QTINDRGYCVDVALAHTLNQIVDVE 214 T ++ + + + + D + G +D+ + +I+ E Sbjct: 344 SLCTWYVYGKHWQTMNDDNQRELYDDLFMPSLKNIIQMQLTGIPLDMEEVLKVEKILIKE 403 Query: 215 RTKLDQELESLTY------------------------------GLVSSSRCLEKLKTWLF 244 + QE+ + + +L+ L+ Sbjct: 404 KVTFYQEMLKFSVITDLVHSVRKRKCEKKNASLKTKQVTVEDFDDQFNPDSPLQLQELLY 463 Query: 245 LETGLH----LEDLTETTCQRVLSSNK-----KLTPQAIQVFNNRMRASRSAVLKLNTLV 295 GL + T + K + + + + ++ + Sbjct: 464 DIMGLPVIDLTDTKAPATGAETMEKLKFKVKTPEHAELLDLLIKFSKVNKIITSFIPAFK 523 Query: 296 EAMNSDGRLRGTLQFL--GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 A ++ F G + +GR S Q +P Sbjct: 524 AAPKAEDGWHYLFGFFNLGGTVSGRLSSSNPNLQQIP----------------------- 560 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 S ++ C A +G V D A +E R+ A + KLK + G D + Sbjct: 561 -SSKSPYSKVIKKCFRAPKGFLFVGLDFASLEDRISAVTTKDSNKLKVYTDGYDGHCLRA 619 Query: 414 ARSFNVAP-------------AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F KD R K L Y+G M + Sbjct: 620 YAYFKDEMPDIINTVESINSIEGKYKDIRQKSKTPTFLLTYRGTY-----MGLMQKCGFD 674 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + E +++++++ E + G Sbjct: 675 EPTAKQIESRYHELYKESDDWVNARLEEATKVGYVTAAFGLRVRTPL 721 >gi|119493749|ref|ZP_01624319.1| DNA polymerase I (PolI) [Lyngbya sp. PCC 8106] gi|119452494|gb|EAW33680.1| DNA polymerase I (PolI) [Lyngbya sp. PCC 8106] Length = 874 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 80/647 (12%), Positives = 162/647 (25%), Gaps = 167/647 (25%) Query: 56 VLKEALENTDVTIV------AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109 L + L+ V N L L + + + + L Sbjct: 34 QLSKILQEPTTVKVFADAVVGQN-------LLNQNGLKV-GGQIFDVKLADSLL--TAGL 83 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + +S + L + + L R+ + A E K + T Sbjct: 84 EVD------NSIASISSRHLGKFSLESLPQDLLKLRDVLRVKLASEELIEVAKIEFNAT- 136 Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 ++ G +D A Q ++ ER L+ +++ Sbjct: 137 -----------------KATAQMSQNGVRLDTAWLKDKQQELEEERRGLESQVKDWLGEK 179 Query: 230 V---------SSSRCLEKLKTW----LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276 + S +K F G+ LE + + + S P Q Sbjct: 180 LPDETDKIQLSDLTSTKKADKTQTLECFNRAGVPLE----SFNKNHIQSLTTEHPILNQF 235 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R + L+ ++ + ++ T A+ TGR S QN+P Sbjct: 236 QRMRTVNDLIGNKGIQGLLNVVDDENKVYPTWHQNSAA-TGRMSATKPAIQNIP------ 288 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS----EGKKLVVADLAGIEARVLAWM 392 ++ +I E + V AD + E R+LA + Sbjct: 289 -------------------------ASLKRAIIPEQQGEEKQVFVRADYSQQELRILAQL 323 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 G++ A++ G D + T + Q+T ++R K + Y + Q A Sbjct: 324 TGDKTLTSAYQEGRDAHRLTASLMTGKPENQITSEERQRAKPVNFGKIYGQSPQGLQSYA 383 Query: 453 S-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 + G+ + + + + + + +++ Sbjct: 384 KVSYGVEFSIEDAMKFQAAMDKGYPSVARHEQQVRQ------------------------ 419 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + ++ + A R + Y Sbjct: 420 -------DFKHQWNAALSSEDNQYPQTRTLLGRKREWQPQQHQ---------------YP 457 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA----EGMMNATKAGYDIVLT 627 + +Q D+ + G I L Sbjct: 458 PINE---------------------ALNAPIQGSGADMSKLALALLPDALQETGAKITLI 496 Query: 628 VHDEIVCETPDTDEFNASMLYH-LMTSN-PSWAKGLPLKAEGYESKR 672 HD+IV ++ + +M +P AE Sbjct: 497 RHDKIVLTAQESQAEKVGKILESVMKVAGLRITPDIPTVAEVSICDN 543 >gi|167462369|ref|ZP_02327458.1| DNA-directed DNA polymerase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 375 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 59/361 (16%), Positives = 106/361 (29%), Gaps = 53/361 (14%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW- 391 +L P P + VR+C I +G V ADL IE R++A Sbjct: 8 HEIVRKLITSNEKAPKGTNLQNLPAKGAGVRVRNCFIPRKGFTFVGADLGQIEPRIMAHI 67 Query: 392 ---MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV---------TKDQRAIGKVMELAL 439 G+ + F G DLY T ++F + T + R + K +LA+ Sbjct: 68 MHTKYGDNSMRQIFMDGVDLYTTGAMQTFGLEEKYCLDEAYDPTGTFEPRKLMKTGQLAV 127 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y K+F +N+ + + + + ++E + Sbjct: 128 SYDQSPKSF-----AKKMNVTEEVAHMFFENFDRTYPSFRTMVKDIREEMKSCGYVETLF 182 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 G + A + K I R ++ Sbjct: 183 GRK---------------RRFPDFNEVASQTARNEQKLIRLYTERKRLRNKKNPTAADMR 227 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN--- 616 R +D + S R ++Q DIL + Sbjct: 228 ------RLTAVQDEIDILSEKRGLVGYWLRAAFNA------VIQGTGADILKLIGIRNAE 275 Query: 617 -ATKAGYDIVLTVHDEIVCETPDTD--EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 + G+++ ++HDEI P+ E ++ +MT +PL + R+ Sbjct: 276 ICRERGWEMNASIHDEIKNSIPNEQLTEGTIDLINEIMTQTVE--LSVPLITDTVIEPRW 333 Query: 674 R 674 Sbjct: 334 M 334 >gi|325272840|ref|ZP_08139177.1| DNA polymerase [Pseudomonas sp. TJI-51] gi|324102045|gb|EGB99554.1| DNA polymerase [Pseudomonas sp. TJI-51] Length = 683 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 79/717 (11%), Positives = 160/717 (22%), Gaps = 211/717 (29%) Query: 70 AHN-SYFERTVLKA-CFNLDIPIHRWICTLVLARS---------------------NGLP 106 HN ++ V++ + I TLV R Sbjct: 61 GHNVIKYDIPVIQKLYPGFIVNPALVIDTLVCTRLIWSNIKDTDTGLLKKAVLPGKLFGS 120 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 +L+A G L+L G+ + +E +YC DV Sbjct: 121 HSLEAWGYRLRLMK-----GEYATEFKARMGDAYVDGMEWLEFSQE----MLDYCVQDVV 171 Query: 167 VTREIF------KRLEPLSSKEQELWYLDQTINDRGYCVDVAL-------AHTLNQIVDV 213 VT ++ + E + +L G+ + ++ Sbjct: 172 VTSALWKRILGKNYSPRALALEHRVAWLMAAQERNGFHFNREKAAILYAKLAQRRGDLER 231 Query: 214 ERTKLDQELESLTY---------------------------------------------- 227 E + + + Sbjct: 232 ELKEFFKFWHAPAGEVLTKKTRRVFIEDPRGNTERRVKLKGQPAFTQVGWFEKYTEGTRY 291 Query: 228 ----GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS-NKKLTPQAIQVFNNRMR 282 + + + + L G E T+ +V KL ++ + Sbjct: 292 TKVKIVEFNPSSRDHIADRLTALYGWVPEKFTKGGKPQVDDEVMSKLNYPPCKLLTEYLL 351 Query: 283 ASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ + GR+ G++ GA+ TGR + +P Sbjct: 352 VAKRISQLAEGKQAWMLVEKQGRIHGSVNPNGAA-TGRATHAYPNVAQVP---------- 400 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA------- 393 R G LV AD +G+E R LA Sbjct: 401 --------------ASGSPYGIDCRELFTVPHGWLLVGADASGLELRCLAHFMARYDGGK 446 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 L ++ + K R K A Y G + Sbjct: 447 YVDILLNGDIHWANVQAMGITSEKRDDHNTLHKLYRDGAKTFIYAFLYGAGDEKVGT--I 504 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ A + + + + ++ +++K + +K Sbjct: 505 VYGMVAKAKALGLDYQHLLDVFFNGQDNPDEEALKAAG------------KKLKATFLRK 552 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + +L + +A ++ G GR + + Sbjct: 553 TPALKKLVKAVKEAAKRGHLVG---------------------------LDGRHVHVKSA 585 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------------G 621 ++Q + ++ Sbjct: 586 HA---------------------ALNYLLQGAGALACKQWLVFLDDELQARGLKHGWDGD 624 Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673 Y VHDE+ + A+++ + + A PL E + Sbjct: 625 YAFCAWVHDEVQIACRNEAI--AAIVREAAEACVAKAGEAFNFRCPLAGESKMGLNW 679 >gi|283969415|gb|ADB54441.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa] gi|283969418|gb|ADB54442.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa] gi|283969420|gb|ADB54443.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa] gi|283969440|gb|ADB54453.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa] gi|283969448|gb|ADB54457.1| DNA polymerase I [Leptospira kirschneri] Length = 144 Score = 118 bits (295), Expect = 4e-24, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 7/146 (4%) Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G +DV L + D E L+ E+ G + ++L+ LF L + T Sbjct: 2 GIALDVPYFEELARDFDREIRHLESEIHKQAGGP-FNIASTKELQKILFDNLKLRIVKKT 60 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFL 311 + +T VL P ++ + R + ++ ++ L + +N GR+ + Sbjct: 61 QTGFSTDHEVLEELAGEHPIIEKLLDYR-KYTKLKSTYVDALPKMVNPKTGRIHTSYNQT 119 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHE 337 A+ TGR S QN+P R Sbjct: 120 IAA-TGRLSSTDPNLQNIPIRDREGR 144 >gi|283969363|gb|ADB54415.1| DNA polymerase I [Leptospira interrogans] gi|283969375|gb|ADB54421.1| DNA polymerase I [Leptospira interrogans serovar Canicola] gi|283969377|gb|ADB54422.1| DNA polymerase I [Leptospira interrogans serovar Canicola] gi|283969379|gb|ADB54423.1| DNA polymerase I [Leptospira interrogans serovar Canicola] gi|283969381|gb|ADB54424.1| DNA polymerase I [Leptospira interrogans] gi|283969383|gb|ADB54425.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni] gi|283969385|gb|ADB54426.1| DNA polymerase I [Leptospira interrogans serovar Icterohaemorrhagiae] gi|283969387|gb|ADB54427.1| DNA polymerase I [Leptospira interrogans serovar Icterohaemorrhagiae] gi|283969389|gb|ADB54428.1| DNA polymerase I [Leptospira interrogans serovar Icterohaemorrhagiae] gi|283969391|gb|ADB54429.1| DNA polymerase I [Leptospira interrogans serovar IH CF1] gi|283969393|gb|ADB54430.1| DNA polymerase I [Leptospira interrogans] gi|283969395|gb|ADB54431.1| DNA polymerase I [Leptospira interrogans serovar Icterohaemorrhagiae] gi|283969399|gb|ADB54433.1| DNA polymerase I [Leptospira interrogans] gi|283969401|gb|ADB54434.1| DNA polymerase I [Leptospira interrogans] gi|283969403|gb|ADB54435.1| DNA polymerase I [Leptospira interrogans] gi|283969405|gb|ADB54436.1| DNA polymerase I [Leptospira interrogans serovar Pomona] gi|283969407|gb|ADB54437.1| DNA polymerase I [Leptospira interrogans serovar Pomona] gi|283969422|gb|ADB54444.1| DNA polymerase I [Leptospira interrogans] gi|283969424|gb|ADB54445.1| DNA polymerase I [Leptospira interrogans] gi|283969426|gb|ADB54446.1| DNA polymerase I [Leptospira interrogans] gi|283969428|gb|ADB54447.1| DNA polymerase I [Leptospira interrogans] gi|283969430|gb|ADB54448.1| DNA polymerase I [Leptospira interrogans] gi|283969432|gb|ADB54449.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni] gi|283969436|gb|ADB54451.1| DNA polymerase I [Leptospira interrogans] gi|283969438|gb|ADB54452.1| DNA polymerase I [Leptospira interrogans] gi|283969444|gb|ADB54455.1| DNA polymerase I [Leptospira interrogans] gi|283969446|gb|ADB54456.1| DNA polymerase I [Leptospira interrogans] gi|283969450|gb|ADB54458.1| DNA polymerase I [Leptospira interrogans] gi|283969452|gb|ADB54459.1| DNA polymerase I [Leptospira interrogans] gi|283969454|gb|ADB54460.1| DNA polymerase I [Leptospira interrogans] Length = 144 Score = 118 bits (295), Expect = 4e-24, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 7/146 (4%) Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G +DV L + D E L+ E+ G + ++L+ LF + L + T Sbjct: 2 GIALDVPYFEELARDFDREIRHLESEIHRQAGGP-FNIASTKELQKILFDDLKLRIVKKT 60 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFL 311 + +T VL P ++ + R + ++ ++ L + +N GR+ + Sbjct: 61 QTGFSTDHEVLEELAGEHPIIEKLLDYR-KYTKLKSTYVDALPKMVNPKTGRIHTSYNQT 119 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHE 337 A+ TGR S QN+P R Sbjct: 120 IAA-TGRLSSTDPNLQNIPIRDREGR 144 >gi|289807535|ref|ZP_06538164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 145 Score = 117 bits (293), Expect = 7e-24, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 5/147 (3%) Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R IA E +V AD + IE R++A ++ ++ L AF G+D++ T A F + Sbjct: 4 GRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLP 63 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 VT +QR K + L Y A + LN+ + E + Sbjct: 64 LDSVTGEQRRSAKAINFGLIYGMSA-----FGLSRQLNIPRKEAQKYMDLYFERYPGVLE 118 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVK 507 + + E + G Sbjct: 119 YMERTRAQAKEQGYVETLEGRRLYLPI 145 >gi|315181204|gb|ADT88118.1| DNA polymerase I [Vibrio furnissii NCTC 11218] Length = 676 Score = 117 bits (293), Expect = 7e-24, Method: Composition-based stats. Identities = 90/690 (13%), Positives = 180/690 (26%), Gaps = 187/690 (27%) Query: 41 PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL- 99 + + + P+ ++L + VT V H++ + + L+ W T + Sbjct: 106 HSFVINVASPSIRPK--LQSLFDLPVTYVTHDAKPDLHCI-WSLGLN-EPRYWWDTCIAE 161 Query: 100 -ARSNGLP----------------------------SALKAVGEALKLSSQKMEEGKELI 130 AR G L + + S K L+ Sbjct: 162 KARYLGQHNNAKPTQDVSTVEKIQIQKTLAEQNTVFYGLADTAQRYNVQSDLASSAKLLM 221 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFKRLEPLSSKEQELWYLD 189 + + + + + + + Y + I + L S E + Sbjct: 222 --GSEQDCPSFSEFQIERTSQLSITVAKLYLTQSQSCLMFGIHQHL---ISIEMPWVVTN 276 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 I G+ V + + + + QEL L + + K LF GL Sbjct: 277 AAIEWNGFKVCRDKCSQILEACERKLNLYSQELAQLGMT---NPNS-QHQKQALFASLGL 332 Query: 250 HLEDLT---ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE--AMNSDGRL 304 + + +LS N L P + + + + +++ + SDGR+ Sbjct: 333 LHHFKDGEDYSFQREMLSKNYALHPAVAFLAKY----THIDSVYKDVILQPGIVGSDGRV 388 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 + L A+ TGR + LP + Sbjct: 389 HSEQKQLTAA-TGRQATVAPNILGLP-------------------------------AVL 416 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET----------GEDLYVTTYA 414 R V+A +G + DLA IE + A + G+ +K + + + Sbjct: 417 RPLVVAQDGYAIGEVDLAQIEVAIAAGVYGDSNLVKMYNQGDLYTAMAQEFFCDELESEY 476 Query: 415 RSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 R + + + ++RAI K L L Y + Sbjct: 477 RICDSSTFKEKYPEKRAIMKQCTLGLIYGITSFGI------------------------- 511 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 A + + + + + ++ Q + Sbjct: 512 -------------------AKKLNISVNKATELMDKFLSMFPELQKAIEKMPQY--GALR 550 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 + R R L + ++++ Sbjct: 551 GHVSTATGLHRY--------------------RQLDAKRGHTEKNWM------------- 577 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASML-Y 648 VQ + + + +++ +HD V E P S L Sbjct: 578 ----VNMPVQGTAAALFKAAGNRLHQLYKSYDAKLIVAMHDAFVFEVPKEHLSEVSELTA 633 Query: 649 HLMTSNP-SWAKGLPLKAEGYES--KRYRK 675 LMT L ++A+ S + K Sbjct: 634 QLMTQVVQEMYPQLKIRADINISQPDCWTK 663 >gi|326425081|ref|YP_004286304.1| DNA polymerase I [Tsukamurella phage TPA2] gi|323145733|gb|ADX31977.1| DNA polymerase I [Tsukamurella phage TPA2] Length = 625 Score = 116 bits (291), Expect = 9e-24, Method: Composition-based stats. Identities = 84/693 (12%), Positives = 174/693 (25%), Gaps = 192/693 (27%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL----WDCVHDPVMPQVLKE 59 + D ET + + + + D P + ++E Sbjct: 37 VATDIETPGLL-----------RQFDINCVTAAWRHGDGRVHSVLLDPDRTPHHDEAVRE 85 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPI--HRWICTLVLARSNG----LPSALKAVG 113 ++ +V + N F+ L + +++ TL+ AR + +L + Sbjct: 86 IYDSAEVI-ILQNGVFDLPALLHSGLITPEQIREKFLDTLLPARMIDTSSPMARSLTMLV 144 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + L +++ G EL + + + Y+ ++ D +T ++ Sbjct: 145 KRH-LGVEELTGGIELAFKAAGYKRQQDGYEG----MDIDSPIYRLGAMADTVMTLALWP 199 Query: 174 RLEP---------------LSSKEQELWYLDQTIND---------RGYCVDVALAHTL-- 207 L + + + +++ I + +G VD Sbjct: 200 VLYEAAIDQQLDHPFQSRGCVDRAEAQYVVERMITELRIVGTRVAKGVNVDRGALERYAD 259 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-LEDLTETTCQRVLSSN 266 + D R L G S+ +E L + L + ++ Sbjct: 260 SVEDDRRRATATLAAVGLEGGKGKESKIIEYLASVGHLPADWPRTPSGKLKATKDLMEGL 319 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 A + + + L + GR + GA+ TGR S P Sbjct: 320 GDPIATAQRTLAHMDQL----TGYLEKVEAQSQVTGRCHPQISVAGAAATGRMSISSPPL 375 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 Q S R+ + A EG+++ D + IE Sbjct: 376 QQF-------------------------------SGPARAILTADEGQRMWSVDWSQIEP 404 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 + E + GA Sbjct: 405 VT---------------------------------------MALLAGDSEFLAPFAAGAD 425 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 ++ + G+ + + A + ++ Sbjct: 426 LYEPIMRAAGIE--------------RKVAKVLLLQTMYGSGAAKIAETIGHTPESAVQL 471 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 ++ S+ + + +GK + A KR Sbjct: 472 RRQMFAAMPESSKFMSRVQTL---GDTHGKIVTAGKRVLDVDSGF--------------- 513 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DI 624 G K T I Q + DIL E ++ + G + Sbjct: 514 ---------------------------GYKATNYICQGTALDILTETIIELDRRGLGDSM 546 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657 + +HDEI+ P A + +M P + Sbjct: 547 LWWMHDEILVSGPP---EVAREVQEVMEIVPDF 576 >gi|213419973|ref|ZP_03353039.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 138 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 54/142 (38%), Gaps = 5/142 (3%) Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R IA E +V AD + IE R++A ++ ++ L AF G+D++ T A F + Sbjct: 2 GRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLP 61 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 VT +QR K + L Y A + LN+ + E + Sbjct: 62 LDSVTGEQRRSAKAINFGLIYGMSA-----FGLSRQLNIPRKEAQKYMDLYFERYPGVLE 116 Query: 481 FCRWMQENHPEHAIEDLFIGTA 502 + + E + G Sbjct: 117 YMERTRAQAKEQGYVETLEGRR 138 >gi|227540973|ref|ZP_03971022.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227183233|gb|EEI64205.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 100 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 43/87 (49%), Positives = 53/87 (60%) Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY 648 R +YGGKL ENIVQAV+RD+ M + G+ IV+ VHDEIV + P F + Sbjct: 13 RLESYGGKLVENIVQAVARDLFVHAMTLVAQTGHKIVMHVHDEIVIDEPVGSGFTVADAC 72 Query: 649 HLMTSNPSWAKGLPLKAEGYESKRYRK 675 LM + P WA GLPL A+GYE YRK Sbjct: 73 VLMATLPDWAAGLPLDADGYECDYYRK 99 >gi|283969353|gb|ADB54410.1| DNA polymerase I [Leptospira interrogans serovar Bratislava] gi|283969355|gb|ADB54411.1| DNA polymerase I [Leptospira interrogans] gi|283969357|gb|ADB54412.1| DNA polymerase I [Leptospira interrogans serovar Australis] gi|283969359|gb|ADB54413.1| DNA polymerase I [Leptospira interrogans serovar Muenchen] gi|283969361|gb|ADB54414.1| DNA polymerase I [Leptospira interrogans serovar Muenchen] gi|283969365|gb|ADB54416.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis] gi|283969367|gb|ADB54417.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis] gi|283969369|gb|ADB54418.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis] gi|283969371|gb|ADB54419.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis] gi|283969373|gb|ADB54420.1| DNA polymerase I [Leptospira interrogans serovar Bataviae] gi|283969397|gb|ADB54432.1| DNA polymerase I [Leptospira interrogans serovar Lai] gi|283969409|gb|ADB54438.1| DNA polymerase I [Leptospira interrogans serovar Pyrogenes] gi|283969413|gb|ADB54440.1| DNA polymerase I [Leptospira interrogans serovar Wolffi] gi|283969434|gb|ADB54450.1| DNA polymerase I [Leptospira interrogans serovar Lai] gi|283969456|gb|ADB54461.1| DNA polymerase I [Leptospira interrogans serovar Bratislava] Length = 144 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 7/146 (4%) Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G +DV L + D E L+ E+ G + ++L+ LF L + T Sbjct: 2 GIALDVPYFEELARDFDREIRHLESEIHRQAGGP-FNIASTKELQKILFDNLKLRIVKKT 60 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFL 311 + +T VL P ++ + R + ++ ++ L + +N GR+ + Sbjct: 61 QTGFSTDHEVLEELVGEHPIIEKLLDYR-KYTKLKSTYVDALPKMVNPKTGRIHTSYNQT 119 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHE 337 A+ TGR S QN+P R Sbjct: 120 IAA-TGRLSSTDPNLQNIPIRDREGR 144 >gi|283969442|gb|ADB54454.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa] Length = 144 Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 7/146 (4%) Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G +DV L + D E L+ E+ G + ++L+ LF L + T Sbjct: 2 GIALDVPYFEELARDFDREIRHLESEIHRQAGGP-FNIASTKELQKILFDNLKLRIVKKT 60 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFL 311 + +T VL P ++ + R + ++ ++ L + +N GR+ + Sbjct: 61 QTGFSTDHEVLEELIGEHPIIEKLLDYR-KYTKLKSTYVDALPKMVNPKTGRIHTSYNQT 119 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHE 337 A+ TGR S QN+P R Sbjct: 120 IAA-TGRLSSTDPNLQNIPIRDREGR 144 >gi|26988997|ref|NP_744422.1| DNA polymerase [Pseudomonas putida KT2440] gi|24983817|gb|AAN67886.1|AE016420_8 DNA polymerase [Pseudomonas putida KT2440] Length = 695 Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 77/720 (10%), Positives = 156/720 (21%), Gaps = 217/720 (30%) Query: 70 AHN-SYFERTVLKA-CFNLDIPIHRWICTLVLARS---------------------NGLP 106 HN ++ V++ + I TLV R Sbjct: 73 GHNVIKYDIPVIQKLYPGFIVNPALVIDTLVCTRLIWSNIKDTDTGLLKKAVLPGKLFGS 132 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 +L+A G L+L G+ + +E +YC DV Sbjct: 133 HSLEAWGYRLRLMK-----GEYATEFKARMGDAYVDGMEWLEFSQE----MLDYCVQDVV 183 Query: 167 VTREIF------KRLEPLSSKEQELWYLDQTINDRGYCVDVAL-------AHTLNQIVDV 213 VT ++ + E + +L G+ + ++ Sbjct: 184 VTSALWKRILGKNYSARALALEHRVAWLMAAQERNGFHFNREKAALLYAKLAQRRGDLER 243 Query: 214 ERTKLDQELESLTY---------------------------------------------- 227 E + + + Sbjct: 244 ELKEFFKFWHAPAGEVLTKKTRRVFIEDPRGNTERRVKLKGQPAFNQVGWFEKYTEGVRY 303 Query: 228 ----GLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 + + + + L G E T+ V+S ++ Sbjct: 304 TKVKIVEFNPSSRDHIADRLTALYGWVPEKFTKGGKPQVDDEVMSKLSYP---PCKLLTE 360 Query: 280 RMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + ++ + GR+ G++ GA+ TGR + +P Sbjct: 361 YLLVAKRISQLAEGKQAWMLVEKQGRIHGSVNPNGAA-TGRATHAYPNVAQVP------- 412 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA---- 393 R G LV AD +G+E R LA Sbjct: 413 -----------------ASGSPYGKDCRELFTVPLGWLLVGADASGLELRCLAHFMARYD 455 Query: 394 ---GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 L ++ + K R K A Y G + Sbjct: 456 GGKYVDILLNGDIHWANVQAMGITSEKRDDHNTLHKLYRDGAKTFIYAFLYGAGDEKVGT 515 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 G+ A + + + + ++ +++K + Sbjct: 516 --IVFGMVAKAKALGLDYQHLLDVFFNGQDNPDEEALKAAG------------KKLKATF 561 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 +K + +L + +A ++ G GR + Sbjct: 562 LRKTPALKKLVKAVKEAAKRGHLVG---------------------------LDGRHVHV 594 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---------- 620 + ++Q + ++ Sbjct: 595 KSAHA---------------------ALNYLLQGAGALACKQWLVFLDDELQARGLKHGW 633 Query: 621 --GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673 Y VHDE+ + + + + A PL E + Sbjct: 634 DGDYAFCAWVHDEVQIACRNEAIAVI--VREAAEACVAKAGEAFNFRCPLAGESKMGLNW 691 >gi|213025755|ref|ZP_03340202.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 107 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 35/133 (26%), Gaps = 26/133 (19%) Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 +T + VL P + R ++ + L +N T Sbjct: 1 KTPGGAPSTSEEVLEELALDYPLPKVILEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSY 59 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 + TGR S QN+P + +R I Sbjct: 60 HQAVTATGRLSSTDPNLQNIPVRNEEGRR-------------------------IRQAFI 94 Query: 370 ASEGKKLVVADLA 382 A E +V AD + Sbjct: 95 APEDYLIVSADYS 107 >gi|159483045|ref|XP_001699573.1| hypothetical protein CHLREDRAFT_178318 [Chlamydomonas reinhardtii] gi|158272678|gb|EDO98475.1| predicted protein [Chlamydomonas reinhardtii] Length = 1008 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 59/367 (16%), Positives = 100/367 (27%), Gaps = 73/367 (19%) Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + + R + ++ ++ GR+ TL +G + TGR S LP Sbjct: 324 VVHLVMEHARLDKLIQSYTGLFLQHVDRRTGRVYPTLNQVG-TATGRLSMSGANLMALPH 382 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 E + R ++A G L+ AD + +E RV+A Sbjct: 383 DKEEFGEHLRNF---------------------RRALVARPGWLLLAADYSQVELRVIAH 421 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 + + AF D++ T AR F V VT QR GK + L Y GA Sbjct: 422 ITQDPTLASAFRERRDVHAQTAARVFRVPLGAVTPAQRQAGKQVNFGLVYGMGAAKL--- 478 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 + L ++ + + + + G Sbjct: 479 --ARDIGLPDNEASDFIHTFRDVFATLYDQMDRTKAQAFVSGYATSLRGRRRGFR----- 531 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 S W + FE A + + Sbjct: 532 GAWSGKGLAWLDWQARFEPWRRQQLAAEVLGKLKADEGLAGWRGMD-------------- 577 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----------G 621 ++R+ L +L Q + DI+ M+ T A Sbjct: 578 --RDDRTTLR--------------ELGNMSYQGSTSDIVKAAMVRCTAALGPGPGGINSR 621 Query: 622 YDIVLTV 628 ++L V Sbjct: 622 AQLLLQV 628 >gi|32442285|gb|AAP82213.1| DNA polymerase [Podovirus GOM] Length = 409 Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 63/476 (13%), Positives = 124/476 (26%), Gaps = 136/476 (28%) Query: 95 CTLVLARSNGLP----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 TLVL+R L+ G L+ + E+ + Sbjct: 1 DTLVLSRLFNPTREGGHGLEGWGYRLRHKKIEFEDFE--------------------SFS 40 Query: 151 REAWRLFGEYCKGDVTVTREIFKR---------LEPLSSKEQELWYLDQTINDRGYCVDV 201 E YC+ DV++ ++++ + + E ++ + Q DRG+ +D Sbjct: 41 PE----MMAYCRQDVSLNHKVYQHLARVEAAGFSKDAVTLEHSVYRIMQAQRDRGFLLDE 96 Query: 202 ALAHTLNQIVDVERTKLDQELESLT----------------------------------- 226 A +L ++ ++ ++ + Sbjct: 97 KHAMSLQAELNENLSQAEKLVHKTFRPRETQMTLVPLMTKAGKVSKMAQIKGETKKVRLS 156 Query: 227 ------------------YGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSS 265 + +++ +L ++VLS Sbjct: 157 DEEYAKASANPNEHLVRCDSEPFNLGSRKQIGEYLMEFGWKPAKFTPTGQPIVDEKVLSK 216 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 K + A V + + + ++ + + + DGR+RG + GA TGR + Sbjct: 217 IKDIPEAA--VIAEYLMLQK-RIAQITSWFKEVGDDGRVRGFVNTNGA-VTGRMTHSHPN 272 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 +P R C +G KLV D +G+E Sbjct: 273 MAQVPSTGSP------------------------YGKECRQCWTVMDGYKLVGIDASGLE 308 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA ++ Y + R K AL Y G Sbjct: 309 LRMLAHYMNDEGF---------TYELLNGDIHTANQMAAGLESRNQAKTFIYALLYGAGD 359 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 + G N + L ++ + + G Sbjct: 360 AKL---GAVVGGNADDGGRLRQSFFDNLPAFKV---LKDRVARAAKRGYLKGLDGR 409 >gi|435164|emb|CAA53760.1| DNA polymerase I [Rhizobium leguminosarum] Length = 158 Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 46/163 (28%), Gaps = 27/163 (16%) Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108 LK LE+ V VA N ++ +LK I + T++++ Sbjct: 10 DALPRLKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLEPAPARHG 66 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + + E G I + N Y D VT Sbjct: 67 MDPLSEKF--------LGHTPIPY----KDVAGSGKANVTFDLVDIDRATHYAAEDADVT 114 Query: 169 REIFKRLEP---------LSSKEQELWYLDQTINDRGYCVDVA 202 ++ L+P E+ L + + RG VD Sbjct: 115 LRLWLVLKPGCARGLTSVYERLERPLLPVLARMEARGITVDRQ 157 >gi|313905698|ref|ZP_07839059.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] gi|313469522|gb|EFR64863.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] Length = 103 Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 2/86 (2%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID +T S +++TKCG KYAE + ++LF D PV ++D +P+ + Sbjct: 2 MKEMSIDLKTYSDVNITKCGAYKYAESDEFEILLFGVSVDGGPVTVYDLACGDTIPEEIL 61 Query: 59 EALENTDVTIVAHNSYFERTVLKACF 84 AL + +VT A N+ FER L Sbjct: 62 AALSDENVTKWAFNASFERVCLSNWL 87 >gi|227544665|ref|ZP_03974714.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A] gi|227185353|gb|EEI65424.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A] Length = 93 Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 39/94 (41%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 T ++ R TYG KL ENIVQA SRD+LA M AG +V+ +HDE V + P Sbjct: 1 NTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAPTD-- 58 Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + +MT P WA GL L A G+ Y+K Sbjct: 59 RSLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 92 >gi|167464943|ref|ZP_02330032.1| DNA-directed DNA polymerase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384416|ref|ZP_08058102.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150774|gb|EFX44234.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 388 Score = 114 bits (285), Expect = 5e-23, Method: Composition-based stats. Identities = 42/359 (11%), Positives = 95/359 (26%), Gaps = 44/359 (12%) Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +L +P P + VR+C I +G + ADL I+ R++A + + Sbjct: 12 RKLITSNEKVPKGTNLQNLPAKGAGVRVRNCFIPRKGFTFIGADLGQIQPRIMAHIMYVK 71 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 V D +M L + +G Sbjct: 72 ---------YGDNSMRQIFVDGV-------DLYTKMAMMTFGLP-EQVCLDKAWYDPVSG 114 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 P + ++ A + + + + Sbjct: 115 QGGFGGEPPATAY-YPRKMMKTGQLAVSYDQSPRAFAKKMNVTEDVAHMFFENFDETFPS 173 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVY----MKKDKNNLILMLPSGRSLVYRD 572 + + + ++ + + ++R P K + L S R ++ Sbjct: 174 FKPMVKDYREMMKR--DGYVETLFGRKRRFPDFNEVAAFVKRNEQRLYRLYSERKR-LQN 230 Query: 573 VGNNRSYLNTT-----------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----A 617 + N R + + + ++Q DIL + Sbjct: 231 ITNPRDADRKRLTAVQDEIDILSAKRGLVGYWIRAAFNAVIQGTGADILKLIGIRNAAVC 290 Query: 618 TKAGYDIVLTVHDEIVCETPDTD--EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 + G+++ ++HDEI P+ ++ +M +PL + + Sbjct: 291 RERGWEMNASIHDEIKNSIPNDQFTAETIDLINEIMMKTVE--LSVPLVTDTVIEPCWM 347 >gi|283969411|gb|ADB54439.1| DNA polymerase I [Leptospira interrogans serovar Pyrogenes] Length = 144 Score = 114 bits (285), Expect = 6e-23, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 7/146 (4%) Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G +DV L + D E L+ E+ G + ++L+ LF L + Sbjct: 2 GIALDVPYFEELARDFDREIRHLESEIHRQAGGP-FNIASTKELQKILFDNLKLRIVKKN 60 Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFL 311 + +T VL P ++ + R + ++ ++ L + +N GR+ + Sbjct: 61 QTGFSTDHEVLEELVGEHPIIEKLLDYR-KYTKLKSTYVDALPKMVNPKTGRIHTSYNQT 119 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHE 337 A+ TGR S QN+P R Sbjct: 120 IAA-TGRLSSTDPNLQNIPIRDREGR 144 >gi|281413897|ref|ZP_06245639.1| DNA polymerase I [Micrococcus luteus NCTC 2665] Length = 134 Score = 114 bits (284), Expect = 7e-23, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 18/140 (12%) Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 RD + + + + GR D+ ++ R Sbjct: 1 GGVRDYLRDVVAQARQDGYTSTIEGRRRYLPDLSSDN---RQLRDMAERAALNAP----- 52 Query: 601 IVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTS 653 +Q + DI+ M++ ++L VHDE++ E P + A ++L M Sbjct: 53 -IQGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILEVPAAELEQATALLEERMGR 111 Query: 654 NPSWAKGLPLKAEGYESKRY 673 +PL + + Sbjct: 112 AAE--LSVPLDVHVGRGRSW 129 >gi|66391259|ref|YP_238608.1| ORF004 [Staphylococcus phage Twort] gi|62637189|gb|AAX92300.1| ORF004 [Staphylococcus phage Twort] Length = 1067 Score = 114 bits (284), Expect = 7e-23, Method: Composition-based stats. Identities = 73/638 (11%), Positives = 147/638 (23%), Gaps = 193/638 (30%) Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L + + L + + + + L Y GD Sbjct: 444 NLSSASKEYVLD----TAINLINKYKNVKDVINDVDGNSFNYDWIPLELMHPYASGDTDA 499 Query: 168 TREIFKRLEPLSSKEQELWYL-------------DQTINDRGYCVDVALAHTLNQIVDVE 214 R I+ + ++ L I G D + ++ E Sbjct: 500 CRRIYCDVINKLKEQNRPKALELLTKSYPRLTRTLARIQSNGMYTDTEYLYMIDDKYSNE 559 Query: 215 RTKLDQELESLTYGLVSS-----------------------------------------S 233 K++Q+L S Sbjct: 560 LDKIEQKLRSHWVIKEFEDTRYDLYMAGVEEFESNPPKERNKSITQYRDKFKNGGWKFKP 619 Query: 234 RCLEKLKTWLFLETGLHLE-------------------------DLTETTCQRVLS--SN 266 LF G+ L ++T ++ Sbjct: 620 SSGAHKGEVLFSILGISLPYEKEFVKDKPFTKGVKEDKLTWEDYKTNKSTIDYIIDNIEL 679 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFP 325 KK + + L +N + L G G + + R S Sbjct: 680 KKDCIDVVVLMKKYAELQTKRNSFTKKLPNLVNKETSTLHGNFNSTG-TASARLSSSAPN 738 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGI 384 Q LP + + D V+ + + + D + I Sbjct: 739 LQQLPSHTSDVNKFD-------------------YHYPVKRAFKSRYKNGIMTELDFSAI 779 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E +++ + L++F GED++ +T + +N +T ++R K + Sbjct: 780 EMKIIGLYTKDPEMLESFLKGEDIHKSTASIVYNKPVEDITAEERQNTKKVN-------- 831 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 G + +F+ E Sbjct: 832 ------FGIAYGESPFSFSGKNNM------------------------------TVEEAE 855 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + + V + H ++ + +R Sbjct: 856 EIFNKYFNTKPSVKNSIDATHDFVQK--HGYVEAMQGHQRF------------------- 894 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNAT 618 + + +S Q R+ I+Q+ + + + + Sbjct: 895 --------IRDAQSSDKKKRNQALRQS------FNTIIQSTAGYLTNMALTFIDDFIQQN 940 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNP 655 IV TVHD I+ +T D F + H+M + P Sbjct: 941 NIKSKIVATVHDSILIDTHPDDIFIIGKVSKHIMENLP 978 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 19/85 (22%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-----------VMPQ 55 D ET S K G ++ + + + + Sbjct: 215 DLETNSLSP-EKKGSKP-------LVLSMSWKNGQGVTIPLYKSDFTWENGQQDIDEILA 266 Query: 56 VLKEALENTDVTIVAHNSYFERTVL 80 +LKE + + + VAHN ++ L Sbjct: 267 MLKEWVASKEDIKVAHNGQYDINFL 291 >gi|32442281|gb|AAP82211.1| DNA polymerase [Podovirus SOG] Length = 410 Score = 114 bits (284), Expect = 7e-23, Method: Composition-based stats. Identities = 67/428 (15%), Positives = 115/428 (26%), Gaps = 101/428 (23%) Query: 95 CTLVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 TLVL+ +LK GE L G E Sbjct: 1 DTLVLSSLFDPQRKGGHSLKVWGERLGDFKDDYTGGFE---------------------- 38 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPL--------SSKEQELWYLDQTINDRGYCVDVA 202 YCK DV VT ++ L + E + + G+ +D Sbjct: 39 -VYTEEMKAYCKQDVKVTELLYNTLLKEGEAFSQASINLEHMVHAIMCEQQANGFELDTD 97 Query: 203 LAHTLNQIVDVERTKLDQELESLTY----------------------------------- 227 LA + + E +++ E++ Sbjct: 98 LAQEIYTVCLKETLRIETEIKEFMVPIAVPVKEVTIKRKKDGAIFANQLLEGCNVQGDYT 157 Query: 228 ---GLVSSSRCLEKLKTWLFLETGLHLEDLTETT-----CQRVLSSNKKLTPQAIQVFNN 279 + ++ L + G + T++ C L++ PQA++ Sbjct: 158 KIMWEEFNLGSPTQINKRL-DKLGWNPTVKTKSGESYKICPENLATIPDDAPQAVKGLKA 216 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + +E DGR+ GT+ GA T R + N+P + + + Sbjct: 217 WKVLE-TRWKLAQEWLEKSQGDGRVHGTVITTGA-VTHRAAHRGPNMANIPSVPHNKDGI 274 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + + + R EG+ LV D AGI+ RVLA + Sbjct: 275 FWKMD-------------GMYAAECRQVFKVPEGRLLVGTDAAGIQLRVLAHYMNDP--- 318 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 + + +FN+ R K A G ++ G Sbjct: 319 ----VYTEQVIDGDIHTFNMNALGRHCKDRPTAKTFIYAFLLGAGVGKIAEILGCNGGQA 374 Query: 460 NTFAHLVK 467 N Sbjct: 375 NVAMKNFY 382 >gi|294892786|ref|XP_002774233.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983] gi|239879450|gb|EER06049.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983] Length = 842 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 59/413 (14%), Positives = 105/413 (25%), Gaps = 104/413 (25%) Query: 273 AIQVFNNRMRASRSA---VLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 ++ + R+ R + L+ L+E + + DG R + TGR Q Sbjct: 517 VCRLLWHLQRSIRISAAITSVLSPLIERIKYDEDGFGRIHPSLALDTTTGRLCCRKPNLQ 576 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 N P +R A G L+V D + +E R Sbjct: 577 NPPSAHNDL-------------------------YSIRKAFSARPGNTLIVGDYSQLELR 611 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ-GGAK 446 +LA M+ + ++ G D++ F + + + + Sbjct: 612 ILAHMSRCESMIRQLNQGGDIHSQCAVDLF--------PEVAEAVANGSVGRLHSRIDRR 663 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 A ++ + S + NF + A E T + Sbjct: 664 ATVQVVIDDAEAHPGIPSVKTKFSTQRQQAKVMNFSIAYGKTERTLAEEMDLPVTDIRDM 723 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 W V E+ + SG Sbjct: 724 FTRWNNSKKGVERWKAEILREVRAC--------------------------------SGE 751 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 VG + +R+ RE T G IV+ Sbjct: 752 FRH-PRVGGRHRHDGHASRRSRRETT--------------------------AHGVKIVM 784 Query: 627 TVHDEIVCETP-DTDEFNASMLYHLMTSN-----PSWAKGLPLKAEGYESKRY 673 VHDE++ E P + ++ LM P + + L + + Sbjct: 785 QVHDEVILEGPAENATDAVPIVRDLMEHPFADIKPDYRMLINLDVDIATGTNW 837 Score = 62.1 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 40/325 (12%), Positives = 76/325 (23%), Gaps = 87/325 (26%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILF-AFG-----FDDHPVELWDCVHDPV-MPQVLKE 59 D E ++LT+ ++ AFG F P+ DC + + + Sbjct: 98 DTE-FWNVELTRNTPAH--SSGELLCLTAFGGGKLDFGSGPLLFVDCKGPSRHVLDLFRS 154 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPSA---------L 109 EN + HN + VL + I + T LAR + Sbjct: 155 YFENPAKRKIFHNFAADAHVL---YGHGITVRGLEADTRYLARLFDSSLSSWEDQVRVSN 211 Query: 110 KAV----GEALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNH--REAWRLFGEYCK 162 + Q+ G + + C L H E + + +Y Sbjct: 212 DLLVCLASRRKNHRRQREVVGVSDGESENCLYRFAGRLGIGGLEAHCSEEKFGEWLKYAA 271 Query: 163 GDVTVTREIFKRLEPLS------------------------------------------- 179 D T +++RL Sbjct: 272 DDAYFTFMLYRRLTDTLRGQEWCTELHWQPIREKIRHGTTTFNGMNDPETYTGLSMSDFA 331 Query: 180 -SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG---------- 228 + L I RG+ + + + + + Sbjct: 332 VKFYRPFTELLVEIERRGFGANREYLIQQLTAAQADLERHKEAFRMIAQSLKDRRGQPLN 391 Query: 229 ---LVSSSRCLEKLKTWLFLETGLH 250 + R ++++ LF Sbjct: 392 PQAEFINPRSAKQIRQLLFGNPDEP 416 >gi|307249709|ref|ZP_07531688.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858217|gb|EFM90294.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 180 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 66/187 (35%), Gaps = 18/187 (9%) Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R IA +G K+V AD + IE R++A +A ++ + AF G+D++ T A Sbjct: 2 PIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAA 61 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 F +A QVT +QR K + L Y + + L ++ + Sbjct: 62 EIFGLALDQVTSEQRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQR 116 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE----LWNELHQAFEQ 530 + + F ++E+ E + G R + + Sbjct: 117 YPAVQQFMTGIRESASEKGYVETLFGR---------RLYLPEIKSSNAMRRKAAERVAIN 167 Query: 531 TIENGKA 537 G A Sbjct: 168 APMQGTA 174 >gi|322786085|gb|EFZ12696.1| hypothetical protein SINV_15346 [Solenopsis invicta] Length = 1172 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 43/325 (13%), Positives = 91/325 (28%), Gaps = 76/325 (23%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E + + G V++ L+ ++ E L+ + +L + +++ Sbjct: 910 EVEMRIVTTLACMELSGIGVNLKSLQELSAVISDEMQSLETKAYNLAGRK-FNFSSSKEV 968 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 ++ L++ Sbjct: 969 GQMIY------------------------------------------------PLLKLAQ 980 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 +D R+RG + TGR S QN+P+ Sbjct: 981 NDSRIRGNCI--TCTVTGRVSMHEPNLQNVPK--------------------DFNFADNN 1018 Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 + VR + + G ++ AD +E R+L + + K + D++ A+ NV Sbjct: 1019 LVISVRMAFVPALGNIMLSADYCQLELRLLTHFSQDSVLCKIMKQPGDIFKNIAAKWNNV 1078 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 QV + R K + + Y G K+ + L ++ S + Sbjct: 1079 TEEQVNNEMRQRTKQLCYGMIYGMGVKSLAE-----NLCVSEPEAQEFLESFMGAYPGIY 1133 Query: 480 NFCRWMQENHPEHAIEDLFIGTACE 504 + + E +G + Sbjct: 1134 KWLNDVLEEAHRDGYVATLLGRRRQ 1158 >gi|255928280|gb|ACU41897.1| gp60 [Mycobacterium phage Puhltonio] Length = 619 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 103/727 (14%), Positives = 194/727 (26%), Gaps = 215/727 (29%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELW--DCVHDPVMPQVLK 58 L D ET + + + D V D D ++ Sbjct: 52 LATDIETPGLDN-----------SFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVA 100 Query: 59 E--ALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLARSN-------GLP 106 E AL ++ HN+ F+ L L ++ R + T+VLAR G Sbjct: 101 EMYALAGP---VILHNAPFDIPPL-FHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQA 156 Query: 107 SALKAVG-EALKLSSQK--MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 L A+ L LS K ME + + +E + ++ + Sbjct: 157 KTLTALAIRYLGLSEFKGGMERAFKAAGYKTQQAGYEGM--------DIDSPIYRQGAMA 208 Query: 164 DVTVTREI----------FKRLEPL--------------SSKEQELWYLDQTINDRGYCV 199 D T + + P ++ + + + G V Sbjct: 209 DTVATLALEPVMRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINV 268 Query: 200 DVALAHTLNQIVDVERTKLDQE--LESLTYGLVSSSRCLEKLKTWLFLETGLH-LEDLTE 256 D V E+ + L G ++ ++ L L Sbjct: 269 DREYLDRYLNQVADEQAIYTADLAAHGLDGGTGKGAKLVQYLADLGELPQPWPRTPKGAL 328 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 + L ++ P A + L + GR + LGAS T Sbjct: 329 RATKADLEYLAEINPLAKAQLSLANIEKTL--GYLTKVSTQAAVTGRCHPQVATLGASAT 386 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S Q P+ +R ++ +G L Sbjct: 387 GRMSYGSPELQQFPKDARP--------------------------------ILCDDGDGL 414 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 D + IE +A MA + ++ Sbjct: 415 TSIDWSQIEPVTMANMARD---------------------------------------ID 435 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 Y+ G + + G++ T ++ ++ +E+ + Sbjct: 436 FLAAYEAGEDLYGPIMLAAGIDRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQ----- 490 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 +K+ R ++ ++ + Q Sbjct: 491 ---------IKRQMFAAMKRSAKWMVKVEEVAAQ-------------------------- 515 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 ++ GR L + G K VQ + D+LA ++ Sbjct: 516 FGRVITAGGRILPVDEGGI-------------------FKAVNYTVQGSAYDVLANTIVE 556 Query: 617 ATKAGY--DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPS----WAKGLP-LKAE-GY 668 + G ++ L +HDE+V TP A+ + +M++ P WA+ P L+ + Sbjct: 557 MYRRGMTDELYLAMHDEVVVSTP-----VAAEVQEIMSTPPEFLIRWAERTPVLRTDRAD 611 Query: 669 ESKRYRK 675 ++ K Sbjct: 612 MGSQWLK 618 >gi|255927583|gb|ACU41205.1| gp59 [Mycobacterium phage Colbert] Length = 619 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 103/727 (14%), Positives = 195/727 (26%), Gaps = 215/727 (29%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELW--DCVHDPVMPQVLK 58 L D ET + + + D V D D ++ Sbjct: 52 LATDIETPGLDN-----------SFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVA 100 Query: 59 E--ALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLARSN-------GLP 106 E AL ++ HN+ F+ L L ++ R + T+VLAR G Sbjct: 101 EMYALAGP---VILHNAPFDIPPL-FHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQA 156 Query: 107 SALKAVG-EALKLSSQK--MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 L A+ L LS K ME + + +E + ++ + Sbjct: 157 KTLTALAIRYLGLSEFKGGMERAFKAAGYKTQQAGYEGM--------DIDSPIYRQGAMA 208 Query: 164 DVTVTREI----------FKRLEPL--------------SSKEQELWYLDQTINDRGYCV 199 D T + + P ++ + + + G V Sbjct: 209 DTVATLALEPVMRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINV 268 Query: 200 DVALAHTLNQIVDVERTKLDQE--LESLTYGLVSSSRCLEKLKTWLFLETGLH-LEDLTE 256 D V E+ + L G ++ ++ L L Sbjct: 269 DREYLDRYLNQVADEQAIYTADLAAHGLDGGTGKGAKLVQYLAERGELPQPWPRTPKGAL 328 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 + L + + P A + L+ + GR + LGAS T Sbjct: 329 RATKADLEALATVNPLAKAQLSLANIEKTL--GYLSKVSTQAAVTGRCHPQVATLGASAT 386 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S Q P+ +R ++ +G L Sbjct: 387 GRMSYGSPELQQFPKDARP--------------------------------ILCDDGDGL 414 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 D + IE +A MA + ++ Sbjct: 415 TSIDWSQIEPVTMANMARD---------------------------------------ID 435 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 Y+ G + + G++ T ++ ++ +E+ + Sbjct: 436 FLAAYEAGEDLYGPIMLAAGIDRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQ----- 490 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 +K+ R ++ ++ + Q Sbjct: 491 ---------IKRQMFAAMKRSAKWMVKVEEVAAQ-------------------------- 515 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 ++ GR L + G K VQ + D+LA ++ Sbjct: 516 FGRVITAGGRILPVDEGGI-------------------FKAVNYTVQGSAYDVLANTIVE 556 Query: 617 ATKAGY--DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPS----WAKGLP-LKAE-GY 668 + G ++ L +HDE+V TP A+ + +M++ P WA+ P L+ + Sbjct: 557 MYRRGMTDELYLAMHDEVVVSTP-----VAAEVQEIMSTPPEFLIRWAERTPVLRTDRAD 611 Query: 669 ESKRYRK 675 ++ K Sbjct: 612 MGSQWLK 618 >gi|255928521|gb|ACU42136.1| gp59 [Mycobacterium phage UncleHowie] Length = 619 Score = 112 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 103/727 (14%), Positives = 195/727 (26%), Gaps = 215/727 (29%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELW--DCVHDPVMPQVLK 58 L D ET + + + D V D D ++ Sbjct: 52 LATDIETPGLDN-----------SFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVA 100 Query: 59 E--ALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLARSN-------GLP 106 E AL ++ HN+ F+ L L ++ R + T+VLAR G Sbjct: 101 EMYALAGP---VILHNAPFDIPPL-FHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQA 156 Query: 107 SALKAVG-EALKLSSQK--MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 L A+ L LS K ME + + +E + ++ + Sbjct: 157 KTLTALAIRYLGLSEFKGGMERAFKAAGYKTQQAGYEGM--------DIDSPIYRQGAMA 208 Query: 164 DVTVTREI----------FKRLEPL--------------SSKEQELWYLDQTINDRGYCV 199 D T + + P ++ + + + G V Sbjct: 209 DTVATLALEPVMRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINV 268 Query: 200 DVALAHTLNQIVDVERTKLDQE--LESLTYGLVSSSRCLEKLKTWLFLETGLH-LEDLTE 256 D V E+ + L G ++ ++ L L Sbjct: 269 DREYLDRYLNQVADEQAIYTADLAAHGLDGGTGKGAKLVQYLAERGELPQPWPRTPKGAL 328 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 + L + + P A + L+ + GR + LGAS T Sbjct: 329 RATKADLEALATVNPLAKAQLSLANIEKTL--GYLSKVSTQAAVTGRCHPQVATLGASAT 386 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S Q P+ +R ++ +G L Sbjct: 387 GRMSYGSPELQQFPKDARP--------------------------------ILCDDGDGL 414 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 D + IE +A MA + ++ Sbjct: 415 TSIDWSQIEPVTMANMARD---------------------------------------ID 435 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 Y+ G + + G++ T ++ ++ +E+ + Sbjct: 436 FLAAYEAGEDLYGPIMLAAGIDRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQ----- 490 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 +K+ R ++ ++ + Q Sbjct: 491 ---------IKRQMFAAMKRSAKWMVKVEEVAAQ-------------------------- 515 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 ++ GR L + G K VQ + D+LA ++ Sbjct: 516 FGRVITAGGRILPVDEGGI-------------------FKAVNYTVQGSAYDVLANTIVE 556 Query: 617 ATKAGY--DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPS----WAKGLP-LKAE-GY 668 + G ++ L +HDE+V TP A+ + +M++ P WA+ P L+ + Sbjct: 557 MYRRGMTDELYLAMHDEVVVSTP-----VAAEVQEIMSTPPEFLIRWAERTPVLRTDRAD 611 Query: 669 ESKRYRK 675 ++ K Sbjct: 612 MGSQWLK 618 >gi|38638464|ref|NP_943839.1| gp61 [Mycobacterium phage PG1] gi|109391908|ref|YP_655158.1| gp62 [Mycobacterium phage Orion] gi|206600352|ref|YP_002241372.1| gp62 [Mycobacterium phage Chah] gi|33334079|gb|AAQ12138.1| gp61 [Mycobacterium phage PG1] gi|88910450|gb|ABD58378.1| gp62 [Mycobacterium phage Orion] gi|206287440|gb|ACI12782.1| gp62 [Mycobacterium phage Chah] gi|282721440|gb|ADA83888.1| gp62 [Mycobacterium phage Fang] gi|282721543|gb|ADA83990.1| gp61 [Mycobacterium phage Scoot17C] Length = 619 Score = 112 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 103/727 (14%), Positives = 194/727 (26%), Gaps = 215/727 (29%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELW--DCVHDPVMPQVLK 58 L D ET + + + D V D D ++ Sbjct: 52 LATDIETPGLDN-----------SFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVA 100 Query: 59 E--ALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLARSN-------GLP 106 E AL ++ HN+ F+ L L ++ R + T+VLAR G Sbjct: 101 EMYALAGP---VILHNAPFDIPPL-FHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQA 156 Query: 107 SALKAVG-EALKLSSQK--MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 L A+ L LS K ME + + +E + ++ + Sbjct: 157 KTLTALAIRYLGLSEFKGGMERAFKAAGYKTQQAGYEGM--------DIDSPIYRQGAMA 208 Query: 164 DVTVTREI----------FKRLEPL--------------SSKEQELWYLDQTINDRGYCV 199 D T + + P ++ + + + G V Sbjct: 209 DTVATLALEPVMRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINV 268 Query: 200 DVALAHTLNQIVDVERTKLDQE--LESLTYGLVSSSRCLEKLKTWLFLETGLH-LEDLTE 256 D V E+ + L G ++ ++ L L Sbjct: 269 DREYLDRYLNQVADEQAIYTADLAAHGLDGGTGKGAKLVQYLADLGELPQPWPRTPKGAL 328 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 + L ++ P A + L + GR + LGAS T Sbjct: 329 RATKADLEYLAEINPLAKAQLSLANIEKTL--GYLTKVSTQAAVTGRCHPQVATLGASAT 386 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S Q P+ +R ++ +G L Sbjct: 387 GRMSYGSPELQQFPKDARP--------------------------------ILCDDGDGL 414 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 D + IE +A MA + ++ Sbjct: 415 TSIDWSQIEPVTMANMARD---------------------------------------ID 435 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 Y+ G + + G++ T ++ ++ +E+ + Sbjct: 436 FLAAYEAGEDLYGPIMLAAGIDRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQ----- 490 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 +K+ R ++ ++ + Q Sbjct: 491 ---------IKRQMFAAMKRSAKWMVKVEEVAAQ-------------------------- 515 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 ++ GR L + G K VQ + D+LA ++ Sbjct: 516 FGRVITAGGRILPVDEGGI-------------------FKAVNYTVQGSAYDVLANTIVE 556 Query: 617 ATKAGY--DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPS----WAKGLP-LKAE-GY 668 + G ++ L +HDE+V TP A+ + +M++ P WA+ P L+ + Sbjct: 557 MYRRGMTDELYLAMHDEVVVSTP-----VAAEVQEIMSTPPEFLIRWAERTPVLRTDRAD 611 Query: 669 ESKRYRK 675 ++ K Sbjct: 612 MGSQWLK 618 >gi|260827865|ref|XP_002608884.1| hypothetical protein BRAFLDRAFT_241579 [Branchiostoma floridae] gi|229294238|gb|EEN64894.1| hypothetical protein BRAFLDRAFT_241579 [Branchiostoma floridae] Length = 196 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 24/213 (11%), Positives = 59/213 (27%), Gaps = 46/213 (21%) Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 E + + A + ++ ++ VS ++ + + Sbjct: 13 RERTKRVVYSIMYGVGPEKLATYLNVSAAESKGFISSFLRRFPGVSRFTHKCKEECK--- 69 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 + R + ++ + +L + Q R+ Sbjct: 70 -----------------------AKGHVRTILKRWRLIPNIKSPNFFLRS---QAERQA- 102 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM 646 +VQ + DI M+ K +++ +HDE+V E D + + Sbjct: 103 -----VNFVVQGSAADICKLAMILVGKRLAEEGLKAKLLIQLHDELVFEVADEEVDSVKG 157 Query: 647 LYH-LM-TSNP---SWAKGLPLKAEGYESKRYR 674 + +M + +PL+ K + Sbjct: 158 VVRDIMQSDALLGGQIKLQVPLRVSVSVGKSWG 190 >gi|325115196|emb|CBZ50752.1| hypothetical protein NCLIV_012190 [Neospora caninum Liverpool] Length = 1235 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 52/412 (12%), Positives = 95/412 (23%), Gaps = 92/412 (22%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-------------PSRSHE 337 L + R+ + TGR S QN+P+ S Sbjct: 881 YPALYPTKHP--RVFTRWNQTR-TVTGRLSSSYPNLQNIPKVMVLPSLSSLTSSSSSCSS 937 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVI--ASEGK-KLVVADLAGIEARVLAWMAG 394 + +S + R +G +V AD A IE R+LA G Sbjct: 938 SSPSSDVSPSSPSSSRLRYTLPKTVNCREAFRDDVQDGSAVVVAADYAQIEMRLLAHFCG 997 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + + + I E+A Y Sbjct: 998 KGPLQSLLTGRDTREARGS-----APDDESETSKEPIDLYREMAALY------------- 1039 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + A + A + + Sbjct: 1040 ------AEIPPSQVTKELRDKVKVTCLALIYGSGTCTIARQMNISLAAASAFRSKFLFVF 1093 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 VS + + + + +GR + Sbjct: 1094 PDVSHFIRSIVAKGRE--------------------------DGFVTTLTGRRRYIPEAK 1127 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-----------D 623 +N S++ +L + +Q + DI+ MM Sbjct: 1128 SNSSHVRALGERL---------SVNSCIQGSASDIMKIAMMRLQAELLSFPWDPHALPPR 1178 Query: 624 IVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++L+VHDE+V S + +T N +PL + Sbjct: 1179 VLLSVHDELVMHCSLKHLQPLSKMIRKCLTENMPV--DVPLDVSISAGPTWG 1228 Score = 64.0 bits (154), Expect = 9e-08, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 19/143 (13%) Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + ++PL ++E + L ++ G + L +D +++E+ Sbjct: 674 LRCHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDEALVAVEKEVNRTAGT 733 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT------------------ETTCQRVLSSNKKLT 270 +L LF L L T +T + +L L Sbjct: 734 SSVQVSSPAQLSNLLFDHLALPLPARTFAAVRGNRPRRAAKRTLARSTAEEILQEIVDLH 793 Query: 271 PQAIQVFNNRMRASRSAVLKLNT 293 P + N R ++ L + Sbjct: 794 PVVPLIQNFR-SLAKLRSTYLES 815 >gi|227544274|ref|ZP_03974323.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A] gi|227185748|gb|EEI65819.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A] Length = 93 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 41/94 (43%), Positives = 52/94 (55%), Gaps = 2/94 (2%) Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 T ++ R TYG KL ENIVQA SRD+LAE M G +V+ +HDE V + P Sbjct: 1 NTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDEAVIDAP--FN 58 Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + LMT P WA GL L A G+ S Y+K Sbjct: 59 RSLDTMVQLMTKVPDWANGLILNAAGFVSDFYKK 92 >gi|221501798|gb|EEE27554.1| DNA polymerase I, putative [Toxoplasma gondii VEG] Length = 932 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 58/399 (14%), Positives = 98/399 (24%), Gaps = 128/399 (32%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L + R+ + TGR S QN+P+ Sbjct: 640 YPALYPTKHP--RVFTRWNQTR-TVTGRLSSSYPNLQNIPK------------------- 677 Query: 351 TSDPDPLQIISDCVRSCVI--ASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + R +G +V AD A IE R+L + D Sbjct: 678 ----------AVNCREAFRDDVQDGSAVVVAADYAQIEMRLLVREKSFSSLVHTRCAPID 727 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 LY + + +VTK+ R KV LAL Y G Sbjct: 728 LYREMASLYAEIPSHEVTKELRDKVKVTCLALIYGSGTCTI------------------- 768 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A + A + + VS + Sbjct: 769 -------------------------ARQMNISLAAASAFRSKFLFVFPDVSHFIRSIIAK 803 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + + + +GR + +N S++ +L Sbjct: 804 GRE--------------------------DGFVTTLTGRRRYVPEAKSNSSHVRALGERL 837 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-----------DIVLTVHDEIVCET 636 + +Q + DI+ MM ++L+VHDE+V Sbjct: 838 ---------SVNSCIQGSASDIMKIAMMRLQAELLSFPWAPDALPPRLLLSVHDELVLHC 888 Query: 637 PDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674 + S + +T N +PL + Sbjct: 889 SLSHLAPLSKMIKSSLTENMPV--DVPLDVSISAGPTWG 925 Score = 97.1 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 63/390 (16%), Positives = 109/390 (27%), Gaps = 61/390 (15%) Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + ++PL ++E + L ++ G + L +D +++E+ + Sbjct: 435 LRTHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVNRVAGT 494 Query: 229 LVSSSRCLEKLKTWLFLETGLHLE---------------DLT--ETTCQRVLSSNKKLTP 271 +L + LF L L T +T + VL L P Sbjct: 495 SCVQVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEIVDLHP 554 Query: 272 QAIQVFNNRMRASRSAVLKLN--------TLVEAMNSDGR-LRGTLQFLG---------- 312 + N R ++ L + +G + + Sbjct: 555 VVPLIQNFR-SLAKLRSTYLESTAALSLSSSCALSAPEGAPFKVAFKLYDREEETCEPAS 613 Query: 313 --ASRTGRWSGCVFPPQNL------------PRPSRSHEELDQIITHLPTSITSDPDPLQ 358 ++TG G P + ++S LQ Sbjct: 614 DSETQTGEEGGKASDTHTCFADAARDYPALYPTKHPRVFTRWNQTRTVTGRLSSSYPNLQ 673 Query: 359 IISDCV--RSCVI--ASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I V R +G +V AD A IE R+L + DLY Sbjct: 674 NIPKAVNCREAFRDDVQDGSAVVVAADYAQIEMRLLVREKSFSSLVHTRCAPIDLYREMA 733 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + + +VTK+ R KV LAL Y G +N++ A + Sbjct: 734 SLYAEIPSHEVTKELRDKVKVTCLALIYGSGTCTI-----ARQMNISLAAASAFRSKFLF 788 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + D +F R + E G Sbjct: 789 VFPDVSHFIRSIIAKGREDGFVTTLTGRRR 818 >gi|328479632|gb|EGF48820.1| DNA polymerase I [Lactobacillus rhamnosus MTCC 5462] Length = 105 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 18/112 (16%) Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GY 622 + + + R +Q + DI+ M+ KA Sbjct: 1 YLPQIHSRNF---NLRKFAERTAMNTP------IQGSAADIIKVAMIRMQKALDEAHLQA 51 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 ++L VHDE++ E P + L +M S S A +PLK E + + Sbjct: 52 KMLLQVHDELIFEAPTAEMAQLGQLVPKIMDSAVSLA--VPLKVESHYGPTW 101 >gi|221480621|gb|EEE19073.1| DNA polymerase I, putative [Toxoplasma gondii GT1] Length = 935 Score = 110 bits (276), Expect = 5e-22, Method: Composition-based stats. Identities = 58/399 (14%), Positives = 98/399 (24%), Gaps = 128/399 (32%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L + R+ + TGR S QN+P+ Sbjct: 643 YPALYPTKHP--RVFTRWNQTR-TVTGRLSSSYPNLQNIPK------------------- 680 Query: 351 TSDPDPLQIISDCVRSCVI--ASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + R +G +V AD A IE R+L + D Sbjct: 681 ----------AVNCREAFRDDVQDGSAVVVAADYAQIEMRLLVGEKSFSSLVHTRCAPID 730 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 LY + + +VTK+ R KV LAL Y G Sbjct: 731 LYREMASLYAEIPSHEVTKELRDKVKVTCLALIYGSGTCTI------------------- 771 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A + A + + VS + Sbjct: 772 -------------------------ARQMNISLAAASAFRSKFLFVFPDVSHFIRSIIAK 806 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + + + +GR + +N S++ +L Sbjct: 807 GRE--------------------------DGFVTTLTGRRRYVPEAKSNSSHVRALGERL 840 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-----------DIVLTVHDEIVCET 636 + +Q + DI+ MM ++L+VHDE+V Sbjct: 841 ---------SVNSCIQGSASDIMKIAMMRLQAELLSFPWAPDALPPRLLLSVHDELVLHC 891 Query: 637 PDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674 + S + +T N +PL + Sbjct: 892 SLSHLAPLSKMIKSSLTENMPV--DVPLDVSISAGPTWG 928 Score = 96.7 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 63/390 (16%), Positives = 109/390 (27%), Gaps = 61/390 (15%) Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + ++PL ++E + L ++ G + L +D +++E+ + Sbjct: 438 LRTHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVNRVAGT 497 Query: 229 LVSSSRCLEKLKTWLFLETGLHLE---------------DLT--ETTCQRVLSSNKKLTP 271 +L + LF L L T +T + VL L P Sbjct: 498 SCVQVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEIVDLHP 557 Query: 272 QAIQVFNNRMRASRSAVLKLN--------TLVEAMNSDGR-LRGTLQFLG---------- 312 + N R ++ L + +G + + Sbjct: 558 VVPLIQNFR-SLAKLRSTYLESTAALSLSSSCALSAPEGAPFKVAFKLYDREEETCEPAS 616 Query: 313 --ASRTGRWSGCVFPPQNL------------PRPSRSHEELDQIITHLPTSITSDPDPLQ 358 ++TG G P + ++S LQ Sbjct: 617 DSETQTGEEGGKASDTHTCFADAARDYPALYPTKHPRVFTRWNQTRTVTGRLSSSYPNLQ 676 Query: 359 IISDCV--RSCVI--ASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I V R +G +V AD A IE R+L + DLY Sbjct: 677 NIPKAVNCREAFRDDVQDGSAVVVAADYAQIEMRLLVGEKSFSSLVHTRCAPIDLYREMA 736 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + + +VTK+ R KV LAL Y G +N++ A + Sbjct: 737 SLYAEIPSHEVTKELRDKVKVTCLALIYGSGTCTI-----ARQMNISLAAASAFRSKFLF 791 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + D +F R + E G Sbjct: 792 VFPDVSHFIRSIIAKGREDGFVTTLTGRRR 821 >gi|237845437|ref|XP_002372016.1| DNA polymerase I, putative [Toxoplasma gondii ME49] gi|211969680|gb|EEB04876.1| DNA polymerase I, putative [Toxoplasma gondii ME49] Length = 938 Score = 110 bits (276), Expect = 5e-22, Method: Composition-based stats. Identities = 58/399 (14%), Positives = 98/399 (24%), Gaps = 128/399 (32%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L + R+ + TGR S QN+P+ Sbjct: 646 YPALYPTKHP--RVFTRWNQTR-TVTGRLSSSYPNLQNIPK------------------- 683 Query: 351 TSDPDPLQIISDCVRSCVI--ASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + R +G +V AD A IE R+L + D Sbjct: 684 ----------AVNCREAFRDDVQDGSAVVVAADYAQIEMRLLVGEKSFSSLVHTRCAPID 733 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 LY + + +VTK+ R KV LAL Y G Sbjct: 734 LYREMASLYAEIPSHEVTKELRDKVKVTCLALIYGSGTCTI------------------- 774 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A + A + + VS + Sbjct: 775 -------------------------ARQMNISLAAASAFRSKFLFVFPDVSHFIRSIIAK 809 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + + + +GR + +N S++ +L Sbjct: 810 GRE--------------------------DGFVTTLTGRRRYVPEAKSNSSHVRALGERL 843 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-----------DIVLTVHDEIVCET 636 + +Q + DI+ MM ++L+VHDE+V Sbjct: 844 ---------SVNSCIQGSASDIMKIAMMRLQAELLSFPWAPDALPPRLLLSVHDELVLHC 894 Query: 637 PDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674 + S + +T N +PL + Sbjct: 895 SLSHLAPLSKMIKSSLTENMPV--DVPLDVSISAGPTWG 931 Score = 96.7 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 63/390 (16%), Positives = 109/390 (27%), Gaps = 61/390 (15%) Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + ++PL ++E + L ++ G + L +D +++E+ + Sbjct: 441 LRTHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVNRVAGT 500 Query: 229 LVSSSRCLEKLKTWLFLETGLHLE---------------DLT--ETTCQRVLSSNKKLTP 271 +L + LF L L T +T + VL L P Sbjct: 501 SCVQVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEIVDLHP 560 Query: 272 QAIQVFNNRMRASRSAVLKLN--------TLVEAMNSDGR-LRGTLQFLG---------- 312 + N R ++ L + +G + + Sbjct: 561 VVPLIQNFR-SLAKLRSTYLESTAALSLSSSCALSAPEGAPFKVAFKLYDREEETCEPAS 619 Query: 313 --ASRTGRWSGCVFPPQNL------------PRPSRSHEELDQIITHLPTSITSDPDPLQ 358 ++TG G P + ++S LQ Sbjct: 620 DSETQTGEEGGKASDTHTCFADAARDYPALYPTKHPRVFTRWNQTRTVTGRLSSSYPNLQ 679 Query: 359 IISDCV--RSCVI--ASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I V R +G +V AD A IE R+L + DLY Sbjct: 680 NIPKAVNCREAFRDDVQDGSAVVVAADYAQIEMRLLVGEKSFSSLVHTRCAPIDLYREMA 739 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + + +VTK+ R KV LAL Y G +N++ A + Sbjct: 740 SLYAEIPSHEVTKELRDKVKVTCLALIYGSGTCTI-----ARQMNISLAAASAFRSKFLF 794 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + D +F R + E G Sbjct: 795 VFPDVSHFIRSIIAKGREDGFVTTLTGRRR 824 >gi|313233190|emb|CBY24305.1| unnamed protein product [Oikopleura dioica] Length = 1902 Score = 110 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 56/504 (11%), Positives = 134/504 (26%), Gaps = 136/504 (26%) Query: 167 VTREIFKRLEPLSSKEQELWYLDQTIND---------RGYCVDVALAHTLNQIVDVERTK 217 V R + ++ + + G + + + + + Sbjct: 1487 VLRRCYLGVKKILEDRNLENKFIAEMEHAEIIFQMSENGMPFSESASEKTIKSLSTLMDR 1546 Query: 218 LDQELESLT--YGLVSSSRCL----EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 L +++ S ++ + FL+ ++ + + VL ++ P Sbjct: 1547 LAIKMKKHAPKGMKRDSLNFNHLLDQRKYVYDFLKCQPLEGKVSLSVSKEVLEVLEEKEP 1606 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + + R A ++ L + + D R+ T + +RTGR S Q Sbjct: 1607 RIRNLIEFRR-AQKAFSDLLT--YKNASRDDRIYST--PVLINRTGRISMDNPSLQ---- 1657 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + + VR+C A+ K + D +E RVLA Sbjct: 1658 ------------------MVQNEFECCGKIIKVRNCFRANPKKIFISVDYRQLELRVLAL 1699 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++G++ +F ED +V+ + Sbjct: 1700 LSGDEGLQASFIDHEDPFVSIGRKWL---------------------------------- 1725 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 + + A + + + + + + Sbjct: 1726 ------------KRERISVAQRTQVKGLVYGVIYGMGNKTLSTTLGVSIEEAKNISSEFM 1773 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + + + ++ ++ +NL GR + Sbjct: 1774 SSYPGMQKFLVDVDKSA--------------------------SSNLYTETLIGRRRSFD 1807 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625 + T + R +Q + DI+ G + A + +V Sbjct: 1808 N----------YTSRAARVA------VNTKIQGSAADIVKIGTVRAARKIKETGINAKLV 1851 Query: 626 LTVHDEIVCETPDTDEFNASMLYH 649 L +HDE++ E ++ + + Sbjct: 1852 LQIHDELLFEVEESQKGLLEDILK 1875 >gi|71755431|ref|XP_828630.1| DNA polymerase theta [Trypanosoma brucei TREU927] gi|70834016|gb|EAN79518.1| DNA polymerase theta, putative [Trypanosoma brucei] Length = 896 Score = 110 bits (275), Expect = 7e-22, Method: Composition-based stats. Identities = 47/382 (12%), Positives = 104/382 (27%), Gaps = 95/382 (24%) Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + + TGR Q +P + Q T++ + Sbjct: 585 VHPHWAVHH-TSTGRLYCSRPNLQTVP-------KTAQKCTYVSPLTSDYGLLFTNPEWT 636 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R + G L+ D +E RVLA ++G++ +K + D+ ++ + Sbjct: 637 MRHLYGPAPGCVLLSFDFNQMELRVLAHLSGDELLIKHLSSEYDVLSAMTRHITGLSDDE 696 Query: 424 V-TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 R KV+ L Y G M + +++ + + Sbjct: 697 QVPPHLRETVKVVVYGLFYGMG---LATMKERVKILMDSAHSVPSSQRKF---------- 743 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + + +A+ Q++ + L +A + + + Sbjct: 744 -------------------TADTLLRAFHQRYPAAGKF---LTRARIRAFHEARCVTLTG 781 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 D+ G + I+ Sbjct: 782 INDLSSEK-------------DGNRRRQHSIA-------------------------RIL 803 Query: 603 QAVSRDILAEGMMNATKAGYDI-----------VLTVHDEIVCETPDTDEFNAS-MLYHL 650 Q S + M+ + +DI VL +HDE++ + + + + Sbjct: 804 QGSSSTLFQSAMVKVHERRHDIVPNLPAAPFALVLCIHDELIYSVVEGYVDVVARKIKGI 863 Query: 651 M-TSNPSWAKGLPLKAEGYESK 671 M ++ +PL+ K Sbjct: 864 MVEQAQVFSLRVPLRVSVKVGK 885 >gi|32442299|gb|AAP82220.1| DNA polymerase [Podovirus GOM] Length = 396 Score = 110 bits (275), Expect = 7e-22, Method: Composition-based stats. Identities = 60/413 (14%), Positives = 107/413 (25%), Gaps = 119/413 (28%) Query: 95 CTLVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 TLVL+R +L+A GE L + + Sbjct: 1 DTLVLSRLYNPQMEGGHSLRAWGERLGF------------------------RKGDHDDW 36 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE--------QELWYLDQTINDRGYCVDVA 202 EYC+ D+ VT +++ L + E+ + G+ +DV Sbjct: 37 STLSDEVIEYCERDLDVTAKLYTELTEKLEEFQGESIELEHEVQRIITEQEKTGWKLDVK 96 Query: 203 LAHTLNQIVDVERTKLDQELESLT------------------------------------ 226 A + + ++++E+ Sbjct: 97 RAFDIQAKLKQRSMEVEREVHKTFTPLPVFDKEVTPKYNKDGSLSVVGLKFLGDRYTDVA 156 Query: 227 ------YGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVF 277 + +++ L E + VLS P+A + Sbjct: 157 GPFSRVSFPEFNLGSRQQIARHLQFFGWKPKLFTEKGQAIVDEGVLSRV--DIPEAKLIA 214 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + ++ + +EA+ DGR+ G + +GA TGR + +P Sbjct: 215 EY--LLIQKRTAQVQSWIEAVEEDGRVHGRVNPIGA-VTGRMTHSSPNMAQVP------- 264 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 R C +G +LV D AG+E R+LA ++ Sbjct: 265 -----------------ASYSPYGTECRECWTVPKGYRLVGIDAAGLELRMLAHYMNDEE 307 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 T R + K A Y G Sbjct: 308 YTN---------EVTNGDVHTTNQKNAGLATRDLAKTFIYAFLYGAGDAKIGA 351 >gi|269964624|ref|ZP_06178862.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269830523|gb|EEZ84744.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 676 Score = 110 bits (275), Expect = 8e-22, Method: Composition-based stats. Identities = 93/690 (13%), Positives = 182/690 (26%), Gaps = 187/690 (27%) Query: 41 PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL- 99 + + + + P+ ++L + VT V H++ + + L+ W T + Sbjct: 106 HSFVINVANPSIRPK--LQSLFDLPVTYVTHDAKPDLHCI-WSLGLN-ESRYWWDTCIAE 161 Query: 100 -ARSNGLP----------------------------SALKAVGEALKLSSQKMEEGKELI 130 AR G L + + S K L+ Sbjct: 162 KARYLGQHNNAKSTQDVSTVEKIQIQKTLAEQNTVFYGLADTAQRYNVQSGLASSAKLLM 221 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFKRLEPLSSKEQELWYLD 189 + L + + + Y + I + L S E + Sbjct: 222 GSEQDCPSFSALQIEQ--TSQLSITVAKLYLTQSQSCLMFGIHQHL---ISIEMPWVVTN 276 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 I G+ V + + + + + Q L L + + K LF GL Sbjct: 277 AAIEWNGFKVCRDKCRQILEACERKLSLYSQGLAQLGMT---NPNS-QHQKQVLFASLGL 332 Query: 250 HLEDLT---ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE--AMNSDGRL 304 + + +LS N L P + + + + +++ + SDGR+ Sbjct: 333 LHHFKDGDDYSFQREMLSKNYALHPAVAFLAKY----THIDSVYKDVILQPGIVGSDGRV 388 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 + L A+ TGR + LP + Sbjct: 389 HSEQKQLTAA-TGRQATVAPNILGLP-------------------------------AVL 416 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE-----------DLYVTTY 413 R V+A +G + DLA IE + A + G+ +K + G+ + Y Sbjct: 417 RPLVVAQDGYVIGEVDLAQIEVAIAAGVYGDSNLVKMYNQGDLYTAMAQEFFCEELEPEY 476 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + + + ++RAI K L L Y + Sbjct: 477 STCDSAVFKEKYPEKRAIMKQCTLGLIYGITSFGI------------------------- 511 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 A + + + + + +++ Q + Sbjct: 512 -------------------AKKLNISVNKATELMDKFLSMFPELQKAIDKMPQY--GALR 550 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 + R R L + ++++ Sbjct: 551 GHVSTATGLHRY--------------------RQLDAKRGHTEKNWM------------- 577 Query: 594 GGKLTENIVQAVSRDILAEGMMNATK--AGYDIVLTV--HDEIVCETPDTDEFNASML-Y 648 VQ + + + Y+ +L V HD V E P S L Sbjct: 578 ----VNMPVQGTAAALFKAAGNRLHQLYKSYNAILIVAMHDAFVFEAPKECLNEVSELTA 633 Query: 649 HLMTSNP-SWAKGLPLKAEGYES--KRYRK 675 +MT L ++A+ S + K Sbjct: 634 QIMTQVVQEMYPQLKIRADINISQPDCWTK 663 >gi|309801255|ref|ZP_07695384.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022] gi|308222144|gb|EFO78427.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022] Length = 727 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 89/295 (30%), Gaps = 18/295 (6%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 L + +P T + +++ +A E + A + Sbjct: 426 LLESVGITLPT-PLFDTKLAGYLVHPDFHAESLEQAAGHFLDLHFEEQSSEATQGTLDLD 484 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-KEQELWYLDQTINDRGYC 198 + N +V + L E + + + G Sbjct: 485 DMDGSSNTQADELQRHAAIVDMLANVLADLLDQRAQFGLLKSIELPVSKVLYGMEHAGAQ 544 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET- 257 VD+ + + + QE+ + G + + ++L+ LF + GL T++ Sbjct: 545 VDMIRLTEMRDQFAAD-ARQAQEIAWESAGERVNLQSPKQLQKILFEDMGLKPTKKTKSG 603 Query: 258 ---TCQRVLSSNKKL-------TPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRG 306 T L + + + +R + + TL++A N DGR+ Sbjct: 604 SYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLKQI--VQTLIDATNPRDGRIHT 661 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 T + A+ TGR S QN+P + + E+ + + S Sbjct: 662 TFEQTVAA-TGRLSSVDPNLQNIPNRNAAGREIRSAFVPGRDTSRCSAPTTRRWS 715 >gi|167945573|ref|ZP_02532647.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 161 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 39/137 (28%), Gaps = 11/137 (8%) Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + V N ++ +VL +++ T++ + ++ + Sbjct: 1 DPEQKKVGQNLKYDMSVLARY-GIELRGIA-FDTMLESYVLDSTAS--------RHDMDS 50 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182 + + K L E + + Y D +T + + L P E Sbjct: 51 LAK-KYLHYDTIHFEDVAGKGKKQLTFDQIPLESAAPYAAEDADITLRLHQTLWPRLQAE 109 Query: 183 QELWYLDQTINDRGYCV 199 L L + V Sbjct: 110 PTLASLTTDLEVPLVPV 126 >gi|71662488|ref|XP_818250.1| DNA polymerase theta (polymerase domain only) [Trypanosoma cruzi strain CL Brener] gi|70883490|gb|EAN96399.1| DNA polymerase theta (polymerase domain only), putative [Trypanosoma cruzi] Length = 881 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 50/387 (12%), Positives = 100/387 (25%), Gaps = 101/387 (26%) Query: 295 VEAMNSDGRL----RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + + RL A+ + + Q + + I+ S Sbjct: 560 PHHVGAQYRLFFSVHAKWSVHHATTSRLFCSR-PCLQTVAKNPP--------ISRTAPSS 610 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 + +R G LV D IE RV+A ++G+ ++ G D+ Sbjct: 611 SPPVTIFTNPEWTLRHLYGPPPGCTLVSFDFNQIELRVMAHLSGDPLLVQQLRGGSDVLA 670 Query: 411 TTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 R + A VT R KV+ L Y G ++ A + Sbjct: 671 EMALRVMQLPRLADVTPYLRQGTKVVVYGLLYGMGPESLDLRLRQLHKETTPSAEQPPLS 730 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + +++ Q + V Sbjct: 731 ---------------------------------ARQFLRSFNQCYPAVQGFLRSTR---L 754 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + + RD+ + + + L Sbjct: 755 RAFHEKRCTTLNGLRDLSGEPDGNRRKQMAVAL--------------------------- 787 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-----------IVLTVHDEIVCETPD 638 +Q + IL M+ + ++ +VL+VHDE+V PD Sbjct: 788 -----------AIQGGAAVILHHAMVEVHEKRHELLPFLPAAAVALVLSVHDELVYAVPD 836 Query: 639 TDEFNAS-MLYHLMT-SNPSWAKGLPL 663 + + + ++ + + +PL Sbjct: 837 SAVSIVAPKIKQILEQQAAALSLSVPL 863 >gi|289976608|gb|ADD21653.1| DNA polymerase [Caulobacter phage Cd1] Length = 797 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 54/495 (10%), Positives = 136/495 (27%), Gaps = 107/495 (21%) Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT--------ETTCQRV 262 + K + + + +T +S + + T+ F + + V Sbjct: 324 FSSGKNKGEFKTKQITVDDLSKPKSRLEDFTYRFPQM--TEPKKQWEGSTPGVYSVSADV 381 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKL----------NTLVEAMNSDGRLRGTLQFLG 312 + ++ ++ ++ + +DG + L Sbjct: 382 IKGLANRGIPFLESLAKVEGLAKDLGTYYVVTDPDTGQQKGMLTLVQADGIIHHMLN-HT 440 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-- 370 ++ T R+S QNLP+ +S V+S I+ Sbjct: 441 STVTARFSSSNPNLQNLPKDGKS---------------------------LVKSVFISRF 473 Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 EGK + +D +E + A + + + + G D++ +++ + + Sbjct: 474 GPEGKV-IQSDFTALEVYIQAILTDCRQLILDLKDGLDMHCVRVSQAEGIPYEE------ 526 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 L + VK S +F R Sbjct: 527 ------------------------AYRLCVVE---KVKEWSTKRTKAKIFSFQRAYGAGA 559 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 A + + +A ++ + + + + ++ + N + L Sbjct: 560 ALIAESTGMAREEVDALIEAENTRYPEIEKFY---ERLTKKIMANSVPTNKFAQHP-DLP 615 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG-KLTENIVQAVSRD 608 ++ + P G+ YR+ + ++ ++ +VQ + Sbjct: 616 HLTCNFRKSTYQTPDGKLYSYRESPAPEFLAKAPASRGGCTTSFSPTEIKNYVVQGGGGE 675 Query: 609 ILAEGM-MNATKAGYD--------IVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPS-- 656 M + +V VHD + + A++L+ M + Sbjct: 676 WAKAAMWLAIRAFYARGNFGGRGLLVNQVHDALYADAAKEVALEVAALLHACMEAASEFM 735 Query: 657 -----WAKGLPLKAE 666 W +P+ ++ Sbjct: 736 EYYFDWEVKVPVPSD 750 >gi|150404389|gb|ABR68508.1| DNA polymerase I [Lactobacillus casei] gi|225349760|gb|ACN87805.1| PolA [Lactobacillus casei] Length = 243 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 30/254 (11%), Positives = 77/254 (30%), Gaps = 41/254 (16%) Query: 57 LKEALENTDVTIVAHNSYFERTVL--------KACFNLDIPIHRWICTLVLARSNGLPSA 108 +K LE+ + + TV + +P L+ + Sbjct: 10 VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIA-FDVLLASYLINPDEN 59 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV--- 165 +G+ + + +L R P + + F K D Sbjct: 60 SNDLGKI-----AEDHDYHDLPRDEDIYGKGA---KRQVPEDDKLFGQFAR--KSDALFA 109 Query: 166 ---TVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +T ++ K+ + + E+ + + +G ++ + L++ Sbjct: 110 LRPDLTGDLKKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKALKAMGTEFSQSIKILEE 169 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277 ++ + + ++L LF + L + T+ +T VL+ K +P + Sbjct: 170 KIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228 Query: 278 NNRMRASRSAVLKL 291 + R ++ + Sbjct: 229 DYR-GWAKLNSTYV 241 >gi|261334514|emb|CBH17508.1| DNA polymerase theta, putative [Trypanosoma brucei gambiense DAL972] Length = 846 Score = 109 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 47/382 (12%), Positives = 103/382 (26%), Gaps = 95/382 (24%) Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + + TGR Q +P + Q T++ + Sbjct: 535 VHPHWAVHH-TSTGRLYCSRPNLQTVP-------KTAQKCTYVSPLTSDYGLLFTNPEWT 586 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R + G L+ D +E RVLA ++G++ ++ + D+ ++ + Sbjct: 587 MRHLYGPAPGCVLLSFDFNQMELRVLAHLSGDELLIQHLSSEYDVLSAMTRHLTGLSDDE 646 Query: 424 V-TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 R KV+ L Y G ++ Sbjct: 647 QVPPHLRETVKVVVYGLFYGMGLATMKE-------------------------------- 674 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 R H++ + + +A+ Q++ + L +A + + + Sbjct: 675 RVKILMDSAHSVPSSQRKITADTLLRAFHQRYPAAGKF---LTRARIRAFHEARCVTLTG 731 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 D+ G + I+ Sbjct: 732 INDLSSEK-------------DGNRRRQHSIA-------------------------RIL 753 Query: 603 QAVSRDILAEGMMNATKAGYDI-----------VLTVHDEIVCETPDTDEFNAS-MLYHL 650 Q S + M+ + +DI VL +HDE++ + + + + Sbjct: 754 QGSSSTLFQSAMVKVHERRHDIVPNLPAAPFALVLCIHDELIYSVVEGYVDVVAREIKGI 813 Query: 651 M-TSNPSWAKGLPLKAEGYESK 671 M ++ +PL+ K Sbjct: 814 MVEQAQVFSLRVPLRVSVKVGK 835 >gi|115475033|ref|NP_001061113.1| Os08g0175600 [Oryza sativa Japonica Group] gi|113623082|dbj|BAF23027.1| Os08g0175600 [Oryza sativa Japonica Group] Length = 570 Score = 109 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 79/295 (26%), Gaps = 62/295 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF---------GFDDHPVELWD--CVHDPVM 53 D E + ID+ + VI F+ F + +W + Sbjct: 280 ACDTE-VANIDVKEETP---VGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGGRDV 335 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------ 106 E+ + V HN F+ V++ C I + + T+ LAR Sbjct: 336 LMEFAPFFEDPSIKKVWHNYSFDSHVIENC---GIKVAGFHADTMHLARLWDSSRRADGG 392 Query: 107 SALKAVGEALKLSSQKMEEGKELIA------RFCKGETHECLYDRNKPNHR------EAW 154 +L+ + ++ + +++ + K + E Sbjct: 393 YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDR 452 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWYLDQTIND 194 L+ Y D T ++++ L+ + L + Sbjct: 453 ELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKMET 512 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF 244 G VD A + + VER + + +++ F Sbjct: 513 EGMFVDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFF 567 >gi|154338261|ref|XP_001565355.1| DNA polymerase theta (polymerase domain only) [Leishmania braziliensis MHOM/BR/75/M2904] gi|134062404|emb|CAM42265.1| putative DNA polymerase theta (polymerase domain only) [Leishmania braziliensis MHOM/BR/75/M2904] Length = 977 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 62/404 (15%), Positives = 111/404 (27%), Gaps = 114/404 (28%) Query: 314 SRTGRWSGCVFPPQNLPR------------------------------------PSRSHE 337 + TGR + QNLP+ P+ Sbjct: 613 TSTGRIFSALPNVQNLPKQPPRTAFPIHALSATQDRSSNGGGDESLRPYGYVDSPTEEDV 672 Query: 338 E----LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + L + S + +R A G LV D +E R+LA ++ Sbjct: 673 DRWLSLAEAGVIDQASSAQFLLFPEHPQWTLRHLYCAPPGCVLVSFDFNQLELRLLAHLS 732 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 G+ + + D+ A + V +QR KV+ L Y G + Sbjct: 733 GDSALQEHLSSNVDVLALVTASVLRLPSIDHVRPEQRQAVKVIVYGLLYGMGPELM---- 788 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 V+ EE+ AE + +E + + + + + Sbjct: 789 ------------DVRIRKINEEFATAEQQQQHDREGAASSSDPESAS---ARDLLRRFYH 833 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + RV E Q + +L++ SGR + + Sbjct: 834 AYPRVESYLRETRQEAQN--------------------------SLVVETLSGRKTLLAE 867 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----------AG 621 NR + VQ + D+L M + A Sbjct: 868 TDANRRKQRAIAQA---------------VQGGAADVLHSAMRAVHQQRHSFLPYLPAAP 912 Query: 622 YDIVLTVHDEIVCETPDTDEFNASM-LYHLMT-SNPSWAKGLPL 663 +V+++HDE+V TP + ++ +PL Sbjct: 913 LALVMSIHDELVYATPRVAIDEVVRGVQRILEDQARVLRLAVPL 956 >gi|150404371|gb|ABR68499.1| DNA polymerase I [Lactobacillus casei] gi|150404379|gb|ABR68503.1| DNA polymerase I [Lactobacillus casei] gi|225349754|gb|ACN87802.1| PolA [Lactobacillus casei] Length = 243 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 30/254 (11%), Positives = 77/254 (30%), Gaps = 41/254 (16%) Query: 57 LKEALENTDVTIVAHNSYFERTVL--------KACFNLDIPIHRWICTLVLARSNGLPSA 108 +K LE+ + + TV + +P L+ + Sbjct: 10 VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIA-FDVLLASYLINPDEN 59 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV--- 165 +G+ + + +L R P + + F K D Sbjct: 60 SNDLGKI-----AEDHDYHDLPRDEDIYGKGA---KRQVPEDDKLFGQFAR--KSDALFA 109 Query: 166 ---TVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +T ++ K+ + + E+ + + +G ++ + L++ Sbjct: 110 LRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277 ++ + + ++L LF + L + T+ +T VL+ K +P + Sbjct: 170 KIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228 Query: 278 NNRMRASRSAVLKL 291 + R ++ + Sbjct: 229 DYR-GWAKLNSTYV 241 >gi|86563272|ref|NP_498250.3| POLQ (DNA polymerase theta) homolog family member (polq-1) [Caenorhabditis elegans] Length = 1661 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 51/332 (15%), Positives = 94/332 (28%), Gaps = 53/332 (15%) Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 E E I G D AL ++ + + L++ + L + + Sbjct: 1271 LQLEMESCQTVLNIFYSGIVFDQALCNSFIYKIRKQIENLEENIWRL-AYGKFNIHSSNE 1329 Query: 239 LKTWLFLETGL--HLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + LF GL + T + +L P ++ R Sbjct: 1330 VANVLFYRLGLIYPETSGCKPKLRHLPTNKLILEQMNTQHPIVGKILEYRQ----IQHTL 1385 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L+ GR+ + + TGR V QN+P+ S Sbjct: 1386 TQCLMPLAKFIGRIHCWFEMC--TSTGRILTSVPNLQNVPKRISSD-------------- 1429 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 R IA+ L+ AD +E RVLA ++ + + + DL+ Sbjct: 1430 ----------GMSARQLFIANSENLLIGADYKQLELRVLAHLSNDSNLVNLITSDRDLFE 1479 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 + R K + L Y GAK+ ++ ++ + Sbjct: 1480 ELSIQWN---------FPRDAVKQLCYGLIYGMGAKSLSELTR-----MSIEDAEKMLKA 1525 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + ++ +E + IG Sbjct: 1526 FFAMFPGVRSYINETKEKVCKEEPISTIIGRR 1557 Score = 98.6 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 65/221 (29%), Gaps = 42/221 (19%) Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + F L + P + + + E++ KA+ V Sbjct: 1474 DRDLFEELSIQWNFPRDAVKQLCYGLIYGMGAKSLSELTRMSIEDAEKMLKAFFAMFPGV 1533 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 NE + E + I +R + Sbjct: 1534 RSYINETKEKV--CKEEPISTIIGRRTII-----------------------------KA 1562 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIV 633 S + ++ R +Q + +I +++ G IVLT+HDE++ Sbjct: 1563 SGIGEERARIERVA------VNYTIQGSASEIFKTAIVDIESKIKEFGAQIVLTIHDEVL 1616 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P+ AS + + M + S +P++ + + Sbjct: 1617 VECPEIHVAAASESIENCMQNALSHLLRVPMRVSMKTGRSW 1657 >gi|116517384|gb|ABJ99064.1| Hypothetical protein W03A3.2 [Caenorhabditis elegans] Length = 1540 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 51/332 (15%), Positives = 94/332 (28%), Gaps = 53/332 (15%) Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 E E I G D AL ++ + + L++ + L + + Sbjct: 1150 LQLEMESCQTVLNIFYSGIVFDQALCNSFIYKIRKQIENLEENIWRL-AYGKFNIHSSNE 1208 Query: 239 LKTWLFLETGL--HLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + LF GL + T + +L P ++ R Sbjct: 1209 VANVLFYRLGLIYPETSGCKPKLRHLPTNKLILEQMNTQHPIVGKILEYRQ----IQHTL 1264 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L+ GR+ + + TGR V QN+P+ S Sbjct: 1265 TQCLMPLAKFIGRIHCWFEMC--TSTGRILTSVPNLQNVPKRISSD-------------- 1308 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 R IA+ L+ AD +E RVLA ++ + + + DL+ Sbjct: 1309 ----------GMSARQLFIANSENLLIGADYKQLELRVLAHLSNDSNLVNLITSDRDLFE 1358 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 + R K + L Y GAK+ ++ ++ + Sbjct: 1359 ELSIQWN---------FPRDAVKQLCYGLIYGMGAKSLSELTR-----MSIEDAEKMLKA 1404 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + ++ +E + IG Sbjct: 1405 FFAMFPGVRSYINETKEKVCKEEPISTIIGRR 1436 Score = 98.6 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 65/221 (29%), Gaps = 42/221 (19%) Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + F L + P + + + E++ KA+ V Sbjct: 1353 DRDLFEELSIQWNFPRDAVKQLCYGLIYGMGAKSLSELTRMSIEDAEKMLKAFFAMFPGV 1412 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 NE + E + I +R + Sbjct: 1413 RSYINETKEKV--CKEEPISTIIGRRTII-----------------------------KA 1441 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIV 633 S + ++ R +Q + +I +++ G IVLT+HDE++ Sbjct: 1442 SGIGEERARIERVA------VNYTIQGSASEIFKTAIVDIESKIKEFGAQIVLTIHDEVL 1495 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673 E P+ AS + + M + S +P++ + + Sbjct: 1496 VECPEIHVAAASESIENCMQNALSHLLRVPMRVSMKTGRSW 1536 >gi|322815448|gb|EFZ24101.1| DNA polymerase theta (polymerase domain only), putative [Trypanosoma cruzi] Length = 881 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 49/374 (13%), Positives = 95/374 (25%), Gaps = 97/374 (25%) Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + A+ + + Q + + I+ S + Sbjct: 573 VHPKWSVHHATTSRLFCSR-PCLQTVAKNPP--------ISRTAPSSSPPVTIFSNPKWT 623 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422 +R G LV D IE RV+A ++G+ ++ G D+ R + Sbjct: 624 LRHLYGPPPGCTLVSFDFNQIELRVMAHLSGDPLLVQQLRDGSDVLAEMALRVMQLPRLT 683 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 VT R KV+ L Y G ++ + FA + Sbjct: 684 DVTPYLRQGTKVVVYGLLYGMGPESLDLRLRQLHKEITPFAEQPPLS------------- 730 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + +++ Q + V + + Sbjct: 731 --------------------ARQFLRSFNQCYPAVQGFLKSTR---LRAFHEKRCATLNG 767 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 RD+ P G + Sbjct: 768 LRDLSGE-------------PDGNRRKQV-------------------------AVALAI 789 Query: 603 QAVSRDILAEGMMNATKAGYD-----------IVLTVHDEIVCETPDTDEFNAS-MLYHL 650 Q + IL M+ + ++ +VL+VHDE+V PD + + + Sbjct: 790 QGGAAVILHHAMVEVHEKRHELVPFLPAAAAALVLSVHDELVYAVPDGAVSFVAPKIKQI 849 Query: 651 MT-SNPSWAKGLPL 663 + + + +PL Sbjct: 850 LEQQAAALSLSVPL 863 >gi|169835973|ref|ZP_02869161.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a] Length = 180 Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 23/208 (11%), Positives = 53/208 (25%), Gaps = 42/208 (20%) Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 NF + + ++ + + E + + E+ Sbjct: 8 QRRNAKVINFGVLYGMSPHGLSAATGMSFIEAKKFIDDYFNLRRPIREF---IEETLEKA 64 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 G GR DV ++ + ++ Sbjct: 65 KNEGYVTTY-----------------------FGRRRPTPDVKSSNFMVREAAKRA---- 97 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDI---VLTVHDEIVCETPDTDEFNASMLY 648 +Q D++ M+ + ++ +L +HD I+ E P + + Sbjct: 98 -----AANMPIQGTEADLMKRAMLRTEEKLGNLGEQILQIHDSILVECPKKNADKVVEIL 152 Query: 649 H-LMTS-NPSWAKGLPLKAEGYESKRYR 674 M S P + LK + + + Sbjct: 153 RFEMESVAPE--LDIKLKVDIKTGEHWG 178 Score = 49.0 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 28/114 (24%), Gaps = 14/114 (12%) Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 AQVT +QR KV+ + Y ++ + Sbjct: 1 MAQVTSNQRRNAKVINFGVLYGMSPHGLSA-----ATGMSFIEAKKFIDDYFNLRRPIRE 55 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 F E + G R+ V + +A ++ N Sbjct: 56 FIEETLEKAKNEGYVTTYFGR---------RRPTPDVKSSNFMVREAAKRAAAN 100 >gi|150404387|gb|ABR68507.1| DNA polymerase I [Lactobacillus casei] gi|150404391|gb|ABR68509.1| DNA polymerase I [Lactobacillus casei ATCC 334] gi|150404419|gb|ABR68523.1| DNA polymerase I [Lactobacillus casei] gi|150404429|gb|ABR68528.1| DNA polymerase I [Lactobacillus casei] gi|225349752|gb|ACN87801.1| PolA [Lactobacillus casei] gi|225349762|gb|ACN87806.1| PolA [Lactobacillus casei] gi|225349764|gb|ACN87807.1| PolA [Lactobacillus casei] gi|225349768|gb|ACN87809.1| PolA [Lactobacillus casei] gi|225349770|gb|ACN87810.1| PolA [Lactobacillus casei] gi|225349772|gb|ACN87811.1| PolA [Lactobacillus casei] Length = 243 Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 31/254 (12%), Positives = 76/254 (29%), Gaps = 41/254 (16%) Query: 57 LKEALENTDVTIVAHNSYFERTVL--------KACFNLDIPIHRWICTLVLARSNGLPSA 108 +K LE+ + + TV + +P L+ + Sbjct: 10 VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIA-FDVLLASYLINPDEN 59 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV--- 165 +G+ + + +L R P + + F K D Sbjct: 60 SNDLGKI-----AEDHDYHDLPRDEDIYGKGA---KRQVPEDDKLFGQFAR--KSDALFA 109 Query: 166 ---TVT--REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +T E ++ + + E L + + +G ++ + L++ Sbjct: 110 LRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277 ++ + + ++L LF + L + T+ +T VL+ K +P + Sbjct: 170 KIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228 Query: 278 NNRMRASRSAVLKL 291 + R ++ + Sbjct: 229 DYR-GWAKLNSTYV 241 >gi|225349766|gb|ACN87808.1| PolA [Lactobacillus casei] Length = 243 Score = 107 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 30/254 (11%), Positives = 76/254 (29%), Gaps = 41/254 (16%) Query: 57 LKEALENTDVTIVAHNSYFERTVL--------KACFNLDIPIHRWICTLVLARSNGLPSA 108 +K LE+ + + TV + +P L+ + Sbjct: 10 VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIA-FDVLLASYLINPDEN 59 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV--- 165 +G+ + + +L R P + + F K D Sbjct: 60 SNDLGKI-----AEDHDYHDLPRDEDIYGKGA---KRQVPEDDKLFGQFAR--KSDALFA 109 Query: 166 ---TVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +T ++ K+ + + E + + +G ++ + L++ Sbjct: 110 LRPDLTGDLEKQEQTDLFTDMEPTLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277 ++ + + ++L LF + L + T+ +T VL+ K +P + Sbjct: 170 KIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228 Query: 278 NNRMRASRSAVLKL 291 + R ++ + Sbjct: 229 DYR-GWAKLNSTYV 241 >gi|150404361|gb|ABR68494.1| DNA polymerase I [Lactobacillus casei] gi|150404383|gb|ABR68505.1| DNA polymerase I [Lactobacillus casei] gi|150404403|gb|ABR68515.1| DNA polymerase I [Lactobacillus casei] gi|150404405|gb|ABR68516.1| DNA polymerase I [Lactobacillus casei] gi|150404411|gb|ABR68519.1| DNA polymerase I [Lactobacillus casei] gi|150404421|gb|ABR68524.1| DNA polymerase I [Lactobacillus casei] gi|150404425|gb|ABR68526.1| DNA polymerase I [Lactobacillus casei] gi|150404427|gb|ABR68527.1| DNA polymerase I [Lactobacillus casei] gi|150404431|gb|ABR68529.1| DNA polymerase I [Lactobacillus casei] gi|225349756|gb|ACN87803.1| PolA [Lactobacillus casei] gi|225349758|gb|ACN87804.1| PolA [Lactobacillus casei] Length = 243 Score = 107 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 31/254 (12%), Positives = 76/254 (29%), Gaps = 41/254 (16%) Query: 57 LKEALENTDVTIVAHNSYFERTVL--------KACFNLDIPIHRWICTLVLARSNGLPSA 108 +K LE+ + + TV + +P L+ + Sbjct: 10 VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIA-FDVLLASYLINPDEN 59 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV--- 165 +G+ + + +L R P + + F K D Sbjct: 60 SNDLGKI-----AEDHDYHDLPRDEDIYGKGA---KRQVPEDDKLFGQFAR--KSDALFA 109 Query: 166 ---TVT--REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +T E ++ + + E L + + +G ++ + L++ Sbjct: 110 LRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277 ++ + + ++L LF + L + T+ +T VL+ K +P + Sbjct: 170 KIYAEAGLK-FNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228 Query: 278 NNRMRASRSAVLKL 291 + R ++ + Sbjct: 229 DYR-GWAKLNSTYV 241 >gi|150404373|gb|ABR68500.1| DNA polymerase I [Lactobacillus casei] gi|150404375|gb|ABR68501.1| DNA polymerase I [Lactobacillus casei] gi|150404377|gb|ABR68502.1| DNA polymerase I [Lactobacillus casei] gi|150404381|gb|ABR68504.1| DNA polymerase I [Lactobacillus casei] gi|150404417|gb|ABR68522.1| DNA polymerase I [Lactobacillus casei] Length = 243 Score = 107 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 28/252 (11%), Positives = 75/252 (29%), Gaps = 37/252 (14%) Query: 57 LKEALENTDVTIVAHNSYFERTVL--------KACFNLDIPIHRWICTLVLARSNGLPSA 108 +K LE+ + + TV + +P L+ + Sbjct: 10 VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIA-FDVLLASYLINPDEN 59 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC----KGD 164 +G+ + + +L R P + + F Sbjct: 60 SNDLGKI-----AEDHDYHDLPRDEDIYGKGA---KRQVPEDDKLFGQFARKSNALFALR 111 Query: 165 VTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 +T ++ K+ + + E+ + + +G ++ + L++++ Sbjct: 112 PDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEEKI 171 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L LF + L + T+ +T VL+ K +P + + Sbjct: 172 YAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDY 230 Query: 280 RMRASRSAVLKL 291 R ++ + Sbjct: 231 R-GWAKLNSTYV 241 >gi|158345163|ref|YP_001522870.1| putative DNA polymerase [Enterobacteria phage LKA1] gi|114796459|emb|CAK24997.1| putative DNA polymerase [Pseudomonas phage LKA1] Length = 791 Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats. Identities = 56/443 (12%), Positives = 116/443 (26%), Gaps = 105/443 (23%) Query: 252 EDLTE--TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL--------------NTLV 295 +D T +T VL K +A + + ++ Sbjct: 386 DDKTPVYSTSSEVLEVLAKHGFEAADKLSRMASLEKDNGTYYRSVEYDKEGNVKKVKGML 445 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + + DG + +L A+ TGR S QNLPR Sbjct: 446 QYVQPDGIIHHSLNLC-ATATGRLSSSYPNLQNLPRDG---------------------- 482 Query: 356 PLQIISDCVRSCVIASEGK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 + V+ + G +++ D + +E +LA ++G++ L+ G D++ Sbjct: 483 -----TSRVKEMFESRFGTAGRIIEVDYSALEVVMLAALSGDENLLEQLVKGTDMHCLRL 537 Query: 414 ARSFNVAPAQ---------------VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 A + K R K A Y A+ Sbjct: 538 AAKLGEPYEEVLHKAVENQAHPEHKRYKQMRTDIKPPSFAAQYGASAE-----GIAYATG 592 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++ + + + F ++ + + AWR Sbjct: 593 VSVEYAKEFLETEARLFPQSIAFRGVVRAEVERTGELPEGLHREQDEATGAWRIYRRGYW 652 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLV---YMKKDKNNLILMLPSGRSLVYRDVGN 575 + +F Q + K + R Y + + ++ + +GR L + + + Sbjct: 653 QAPGGARYSFRQWPQWNKELRQRVMDYKDTQIANYWCQGEAFYLMAVSAGRVLRW--LLS 710 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 N Q + VHD + + Sbjct: 711 VNFLANEEFPQGRVCFINN---------------------------------VHDALYFD 737 Query: 636 TPDTDEFNAS-MLYHLMTSNPSW 657 ++ + +M P + Sbjct: 738 VHESVVREVGLQVKAIMEDAPKY 760 Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 56/203 (27%), Gaps = 39/203 (19%) Query: 67 TIVAHNSYFERTVLKACFNLDI-----PIHRWICTLVLARSN----GLPSALKAVGEALK 117 +VAHN+ +E + + + R +CT + +L Sbjct: 70 LLVAHNAGYEVSWFLTRYRDEFEKFLKRGGRVLCTQMAEYILSNFTDTYPSLDETAPKYG 129 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK---GDVTVTREIFKR 174 + K++ KEL + + + +L EY GDV TR F Sbjct: 130 -GTHKIDAVKEL-------------WKQGHLTSQIDPKLLAEYLAGPEGDVENTRRTFYG 175 Query: 175 LEPLSSKEQELWYLD---------QTINDRGYCVDVAL----AHTLNQIVDVERTKLDQE 221 L + + G V+ + + R ++ + Sbjct: 176 QMALLQERGQWGLFLERCEALLAFAYCEFFGLYVNTEVAEANLAKQEAELAELRAEVQKL 235 Query: 222 LESLTYGLVSSSRCLEKLKTWLF 244 L L + L LF Sbjct: 236 LPELPEHFEFNWGSDYHLSALLF 258 >gi|150404365|gb|ABR68496.1| DNA polymerase I [Lactobacillus casei] gi|150404409|gb|ABR68518.1| DNA polymerase I [Lactobacillus casei] gi|150404423|gb|ABR68525.1| DNA polymerase I [Lactobacillus casei] gi|150404433|gb|ABR68530.1| DNA polymerase I [Lactobacillus casei] gi|150404437|gb|ABR68532.1| DNA polymerase I [Lactobacillus casei] gi|225349774|gb|ACN87812.1| PolA [Lactobacillus casei] Length = 243 Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats. Identities = 28/252 (11%), Positives = 75/252 (29%), Gaps = 37/252 (14%) Query: 57 LKEALENTDVTIVAHNSYFERTVL--------KACFNLDIPIHRWICTLVLARSNGLPSA 108 +K LE+ + + TV + +P L+ + Sbjct: 10 VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIA-FDVLLASYLINPDEN 59 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC----KGD 164 +G+ + + +L R P + + F Sbjct: 60 SNDLGKI-----AEDHDYHDLPRDEDIYGKGA---KRQVPEDDKLFGQFARKSNALFALR 111 Query: 165 VTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 +T ++ K+ + + E+ + + +G ++ + L++++ Sbjct: 112 PDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEEKI 171 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L LF + L + T+ +T VL+ K +P + + Sbjct: 172 YAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDY 230 Query: 280 RMRASRSAVLKL 291 R ++ + Sbjct: 231 R-GWAKLNSTYV 241 >gi|189427035|ref|YP_001950134.1| DNA polymerase I [Ralstonia phage RSL1] gi|189233347|dbj|BAG41704.1| DNA polymerase I [Ralstonia phage RSL1] Length = 1050 Score = 107 bits (266), Expect = 8e-21, Method: Composition-based stats. Identities = 82/757 (10%), Positives = 171/757 (22%), Gaps = 195/757 (25%) Query: 1 MA------TLFIDFETRSPIDLTKCGICKYAEDVCV-----ILFAFGFDDHPVELWDCVH 49 M +D ET +L+ Y + D HP+ W Sbjct: 235 MKRFDTAEYCALDTET---KNLSSLHNRIYTMQFTTNHNPNAGYVLAID-HPLTHWSKEE 290 Query: 50 DPVMPQVLKEALENTD----VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 + + L++ +T H F+ V++ + I + S Sbjct: 291 RQYIKRELRQRFAAKTGPLLITFNGH--MFDLRVIRQILRIPIMWLPVWEIMFAEHSLDE 348 Query: 106 PSAL-KAVGEALKLSSQKMEEG------------KELIARFCKGETHECLYDR------- 145 ++L A A+ +K G A F K + + Sbjct: 349 NASLLNAASNAVNPDGKKATYGGLAPIFTSYGNDHYYTAAFSKAQRSTSGQVKPDNPDFL 408 Query: 146 -------------------NKPNHREAWRLFGEY-----CKGDVTVTREIFKRLEPLSSK 181 + F Y + + SS Sbjct: 409 EYASTDTVSIAHIRQMQIKRASYMEIDGQSFAPYFVRHMEQQMSDTAHALSHMRNDGSSL 468 Query: 182 EQELWYLDQ-----TINDRGYCVDVALAHTLNQIVDVERTKLDQ-ELESLTY----GLVS 231 + +D + + E + +SL + Sbjct: 469 SRPALKHLMGPKSPLREMMAKTLDQLRLMNEVRKANKELLSDSGFKAKSLFGGVSDKWIF 528 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETT-----CQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + F GL +++ T + + K ++ ++ Sbjct: 529 QPTKPDHKAKLFFDVLGLEPLSMSKITGKPQIDKEFIKHYKDKNKVVA-LYGEYQALTKV 587 Query: 287 AVLKLNTLVEAMNS------DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + +N+ D LR + TGR Q +P Sbjct: 588 ISTYVKAWSRRLNTALDESTDDSLRADYFLV---DTGRLGSKDPNLQQIPSRGP------ 638 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +S +++ +A G LV D + E R+ + +G++ Sbjct: 639 -------------------LSKLLKTLFVARPGYLLVRFDYSAHEVRIWSVASGDKVIAA 679 Query: 401 AFETGEDLYVTTYARSFNVAPA---------------------QVTKDQRAIGKVMELAL 439 AF TG +L + R K + + Sbjct: 680 AFRTGLELRQAFIQDPSDANKKALKEKGDFHILNVQRFFKKLVDKDHPLRDAVKKVVFGV 739 Query: 440 GYQGGAKAFQKMASTTGLNLNTFA-HLVKTNSAPEEWEDAENFCRWMQEN--HPEHAIED 496 Y GA+ + ++ + S + M E A+ + Sbjct: 740 IYGKGAETLGEDTKEGDISSLRAEVAKLYDESLTCKDAKRLARINEMLEELDDKLTALFN 799 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + + + + E+ Sbjct: 800 EDRSEYAQGIVDKMFGEFKAGHRWIQRMSKMAEE-------------------------- 833 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG--- 613 + +GR + + R T +Q V+ +I + Sbjct: 834 KFYVYSFNGRVRHLY---AAMTGDKRIISKQVRRGTNAP------IQGVASEIGNKADRL 884 Query: 614 --------------MMNATKAGY--DIVLT--VHDEI 632 M+ ++ + + VHD + Sbjct: 885 IITEYYKRLPKLKKMLGIDRSDWELRVFSQRAVHDAL 921 >gi|150404367|gb|ABR68497.1| DNA polymerase I [Lactobacillus casei] gi|150404369|gb|ABR68498.1| DNA polymerase I [Lactobacillus casei] gi|150404385|gb|ABR68506.1| DNA polymerase I [Lactobacillus casei] gi|150404393|gb|ABR68510.1| DNA polymerase I [Lactobacillus casei] gi|150404395|gb|ABR68511.1| DNA polymerase I [Lactobacillus casei] gi|150404435|gb|ABR68531.1| DNA polymerase I [Lactobacillus casei] Length = 243 Score = 107 bits (266), Expect = 9e-21, Method: Composition-based stats. Identities = 29/252 (11%), Positives = 77/252 (30%), Gaps = 37/252 (14%) Query: 57 LKEALENTDVTIVAHNSYFERTVL--------KACFNLDIPIHRWICTLVLARSNGLPSA 108 +K LE+ + + TV + +P L+ + Sbjct: 10 VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIA-FDVLLASYLINPDEN 59 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC----KGD 164 +G K+ E + + ++ R P + + F Sbjct: 60 SNDLG--------KIAEDHDYHDLPRDEDIYDKGAKRQVPEDDKLFGQFARKSNALFALR 111 Query: 165 VTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 +T ++ K+ + + E+ + + +G ++ + L++++ Sbjct: 112 PDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEEKI 171 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279 + + ++L LF + L + T+ +T VL+ K +P + + Sbjct: 172 YAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDY 230 Query: 280 RMRASRSAVLKL 291 R ++ + Sbjct: 231 R-GWAKLNSTYV 241 >gi|150404363|gb|ABR68495.1| DNA polymerase I [Lactobacillus casei] gi|150404397|gb|ABR68512.1| DNA polymerase I [Lactobacillus casei] gi|150404399|gb|ABR68513.1| DNA polymerase I [Lactobacillus casei] gi|150404401|gb|ABR68514.1| DNA polymerase I [Lactobacillus casei] gi|150404407|gb|ABR68517.1| DNA polymerase I [Lactobacillus casei] gi|150404413|gb|ABR68520.1| DNA polymerase I [Lactobacillus casei] gi|150404415|gb|ABR68521.1| DNA polymerase I [Lactobacillus casei] gi|150404439|gb|ABR68533.1| DNA polymerase I [Lactobacillus casei] Length = 243 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 27/256 (10%), Positives = 73/256 (28%), Gaps = 45/256 (17%) Query: 57 LKEALENTDVTIVAHNSYFERTVL--------KACFNLDIPIHRWICTLVLARSNGLPSA 108 +K LE+ + + TV + +P L+ + Sbjct: 10 VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIA-FDVLLASYLINPDEN 59 Query: 109 LKAVGE------ALKLSSQKMEEGKELIARFCKGETHECLYDRN----KPNHREAWRLFG 158 +G+ + + GK + + + + R + Sbjct: 60 SNDLGKIAEDHDYHDMPRDEDIYGKGAKRQVPEDDKLFGQFARKSNALFALRPDLTGDLE 119 Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + + D+ + E L + + +G ++ + L Sbjct: 120 KQAQTDL------------FTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKIL 167 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQ 275 ++++ + + ++L LF + L + T+ +T VL+ K +P Sbjct: 168 EEKIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQD 226 Query: 276 VFNNRMRASRSAVLKL 291 + + R ++ + Sbjct: 227 ILDYR-GWAKLNSTYV 241 >gi|168705115|ref|ZP_02737392.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246] Length = 125 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 15/125 (12%) Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 L GR + G + + RE +Q + D++ + M+ Sbjct: 1 ERGRLQTILGRWRAFNLDGRDVNSTYQGRTMAAREAI------NYEIQGSAADLIKKAML 54 Query: 616 NAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668 A + ++LTVHDE+V E P + + L MTS +PLK + Sbjct: 55 GAHARMAAQRLHARMLLTVHDELVFEAPPAEVEPLARLVREEMTSAIK--LDVPLKVDVA 112 Query: 669 ESKRY 673 + Sbjct: 113 AGPNW 117 >gi|157870107|ref|XP_001683604.1| DNA polymerase theta (polymerase domain only) [Leishmania major strain Friedlin] gi|68126670|emb|CAJ04554.1| putative DNA polymerase theta [Leishmania major strain Friedlin] Length = 1170 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 67/453 (14%), Positives = 114/453 (25%), Gaps = 130/453 (28%) Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA---------------SRTGRWSGC 322 R A + V L +A DG A + TGR Sbjct: 760 MFRKVADKLHVCVLEKPRDAAAEDGTAVPDAWTAQASQVCYSMHPDWVLHNTSTGRIFSA 819 Query: 323 VFPPQNLPR----------------------------------PSRSHEE----LDQIIT 344 + QNLP+ P+ E L + Sbjct: 820 LPNVQNLPKQPPRTMFPIHALSATPSRNSGGDESLRPYSHIDPPTEEDVERWLSLAEAAA 879 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 S P + +R A G L D +E R+LA ++G+ + Sbjct: 880 VDQASPAQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGDAALQEHLSA 939 Query: 405 GEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+ A + +V QR KV+ L Y G ++ Sbjct: 940 NVDVLALVTASVLRLPSIDRVRPQQRQAVKVVVYGLLYGMGLESMDV------------- 986 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + E F Q+ H A + + + + + R+ E Sbjct: 987 ---------RIKKINEEFAASEQQQHRGEASSSAPAPMPARDLLRRFHRVYPRIESYLRE 1037 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 Q + + + SGR + + NR Sbjct: 1038 TRQEALR--------------------------SFAVETLSGRKSLIAEKDANRRKQRAI 1071 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----------AGYDIVLTVHDEI 632 + VQ + D+L M + A +V+++HDE+ Sbjct: 1072 AQA---------------VQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLALVMSIHDEL 1116 Query: 633 VCETPDTDEFNASM-LYHLMT-SNPSWAKGLPL 663 V P + ++ +PL Sbjct: 1117 VYAVPRVAIDEVVRGVQRILEDQARVLRLAVPL 1149 >gi|294948800|ref|XP_002785901.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983] gi|239900009|gb|EER17697.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983] Length = 1712 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 38/336 (11%), Positives = 84/336 (25%), Gaps = 78/336 (23%) Query: 319 WSGCVFPPQ-NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 + L + DQ+ + + +R +A +G+ L+ Sbjct: 1406 LASRAPQCTIQLSTGQKLVYPADQVFRQSAAVAVTADADARKRVIALRDAFVAPKGRLLL 1465 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 D +EAR+LA G+Q + F + Y +T + ++++ + Sbjct: 1466 SVDYCQLEARLLAHFCGDQRLITLFNQPDGDYNSTGSPTYDIFVHIASTWLS-------- 1517 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 L + + + + E Sbjct: 1518 -------------------------KALNEVSDMERNGIKQLVYGVIYGMGARSLSREMG 1552 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 E + + + RV E + + Sbjct: 1553 VTLAEGEALMSKFDNEFPRVREWTRSVIHGA-------------------------TREG 1587 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 + GR +G + + R+ QA + DI+ + Sbjct: 1588 ASVPSILGRPRHLAGLGGGGTA--QERARAQRQA------VNTACQASAADIMKAATLEV 1639 Query: 618 TKA-----------GYDIVLTVHDEIVCETPDTDEF 642 + +I+L +HDE++ E + Sbjct: 1640 ARRLAAMRDENGRPPAEILLQIHDELLLEVDEDRIE 1675 Score = 37.8 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 48/227 (21%), Gaps = 35/227 (15%) Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL---------- 178 L+A E Y D+ I+ L Sbjct: 1074 LMAWLRNPEDSTGPSL----EKYVKQLSAPHYLDRDLKQCLAIYALCTELGRGLVQHSGL 1129 Query: 179 ----SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + E L + G V + + + + G + Sbjct: 1130 LELLVTVEAPTAALLVDMEVTGLMVTPSYWFHRQGKHARYKMQALEVAVREAVGRYVALG 1189 Query: 235 CLEKLKTWLFLETGLHLE-----DLTET-------TCQRVLSSNKKL---TPQAIQVFNN 279 E + +F + + + + Q+ L + + Sbjct: 1190 NAEDVSKAIFDDLNVPVPEGLRPRKVKKNGHKVYAVDQKTLMQLDPPDRCHDLFDWIMEH 1249 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 R + + K + + DG T + TGR Sbjct: 1250 RRLSHVLS--KHAVIDRHVLHDGLRVHTTFTQTGTATGRLKSTDPNL 1294 >gi|322492142|emb|CBZ27416.1| DNA polymerase theta (polymerase domain only),putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 1171 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 54/411 (13%), Positives = 94/411 (22%), Gaps = 113/411 (27%) Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH---------------------------- 336 L + TGR + QN+P+ Sbjct: 801 MHPDWVLHNTSTGRIFSSLPNVQNVPKQPPRTAFPIHTLSATPSRNSGGDESLRHYSYVD 860 Query: 337 ----------EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 L + S P + +R A G L D +E Sbjct: 861 PPTEEDVARWLALAEAALVDQASSAQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLEL 920 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGA 445 R+LA ++G+ + D+ A + V QR KV+ L Y G Sbjct: 921 RLLAHLSGDAALQEHLSANVDVLALVTASVLRLPSIDHVRPQQRQAVKVIVYGLLYGMGP 980 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 ++ T Sbjct: 981 ESMDVRIKKINEEFATSEQQQHHRGGEASSPGPAPMS--------------------AHD 1020 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + + + + R+ E Q + + + SG Sbjct: 1021 LLRRFHHVYPRIESYLRETRQEALR--------------------------SFAVETLSG 1054 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------ 619 R + + NR + VQ + D+L M + Sbjct: 1055 RKSLIAEKDANRRRQRAIAQA---------------VQGGAADVLHSAMRAVHQQRHSFL 1099 Query: 620 -----AGYDIVLTVHDEIVCETPDTDEFNASM-LYHLMT-SNPSWAKGLPL 663 A +V++VHDE+V P + ++ +PL Sbjct: 1100 PYLPAATLALVMSVHDELVYAVPRAAIEEVVRGVQRVLEDQARVLRLAVPL 1150 >gi|213022529|ref|ZP_03336976.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 478 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 41/135 (30%), Gaps = 23/135 (17%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 ++LK LE+ V V N ++R VL+ +++ T++ + Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460 Query: 114 EALKLSSQKMEEGKE 128 + + K ++ Sbjct: 461 LSDRWLKHKTITFED 475 >gi|269976594|ref|ZP_06183579.1| DNA polymerase [Mobiluncus mulieris 28-1] gi|269935395|gb|EEZ91944.1| DNA polymerase [Mobiluncus mulieris 28-1] Length = 143 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 6/147 (4%) Query: 97 LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156 +V A + GLP +LK VG+ L L +QKM+EGK+LI FC + + R + W+L Sbjct: 1 MVWAATLGLPLSLKDVGKVLNLDAQKMDEGKDLIKHFCVPDDNS--QRRLPSSDPAGWKL 58 Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 F Y DV V I ++L P+ E + +DQ INDRG +D LA + I + Sbjct: 59 FQSYNARDVQVETAIRQKLANFPVPEYVWEQYEVDQRINDRGIRIDTTLAASAITIDEKH 118 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKT 241 R + LT + + +L+ Sbjct: 119 RAQALARAHKLTG--LDNPASPLQLQE 143 >gi|332142368|ref|YP_004428106.1| DNA-directed DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] gi|327552390|gb|AEA99108.1| DNA-directed DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] Length = 289 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 92/286 (32%), Gaps = 36/286 (12%) Query: 1 MATLFIDFETR--SPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQV 56 M + +D+ET S ++ K G Y D ++ + + + V+ + Sbjct: 1 MIDVTLDWETYFDSQYNIKKLGTMAYVRDPRFQILGASMKVEHEDTRWYTPNEIDVLVEE 60 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGE 114 LK + V ++ N+ F+ +L + + T+ +A+ L ++ + Sbjct: 61 LKSLEASNGVRLIGQNTKFDGLILA--EKHNFIPSYYCDTMAMAKGLWPHHKSDLDSLTK 118 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L + + +G EL + K ++ +Y D +T E FK+ Sbjct: 119 RLFPNDKSKHKGTELESFKGKTYEDI--------EADGTEQILIQYGVQDSDITYESFKQ 170 Query: 175 LEPLSSKEQELWYLDQTINDRGYCV---DVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 +E + E+ +D T+ V D +L + E+ + Q Sbjct: 171 MEQW-YPKPEMDIIDMTVRMFCDPVFVLDTSLMDRVAVEATKEKESVIQTAIDFVNSDEI 229 Query: 232 SSR----------------CLEKLKTWLFLETGLHLEDLTETTCQR 261 +R K L G+ + T + Sbjct: 230 KARRLMINGELQAISPKTFSSNKEFPLLLESLGMDIPMKKSPTTGK 275 >gi|146087835|ref|XP_001465919.1| DNA polymerase theta (polymerase domain only) [Leishmania infantum JPCM5] gi|134070020|emb|CAM68350.1| putative DNA polymerase theta (polymerase domain only) [Leishmania infantum JPCM5] Length = 1169 Score = 104 bits (259), Expect = 5e-20, Method: Composition-based stats. Identities = 66/453 (14%), Positives = 116/453 (25%), Gaps = 130/453 (28%) Query: 278 NNRMRASRSAVLKLNTLVEAMNSDG------------RLRGTLQFLGA---SRTGRWSGC 322 R A + V L ++ DG R+ ++ TGR Sbjct: 759 MFRKVADKLHVCVLEKPRDSAAEDGPAVSDASTAQVSRVCYSMHPNWVLHNKSTGRIFSA 818 Query: 323 VFPPQNLPR----------------------------------PSRSHEE----LDQIIT 344 + QNLP+ P+ + L + Sbjct: 819 LPNVQNLPKQPPRTTFPIHALSATPSRNSGGDESLRPYGYVDPPTEEDVDRWLSLAEAAA 878 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 S P + +R A G L D +E R+LA ++G+ + Sbjct: 879 VDQASSAQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGDAALQEHLSA 938 Query: 405 GEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+ A + V QR KV+ L Y G ++ Sbjct: 939 NVDVLALVTASVLRLPSIDHVRPQQRQAVKVIVYGLLYGMGPESMDV------------- 985 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + E F Q+ H A A + + + + + R+ E Sbjct: 986 ---------RIKKINEEFATSEQQQHRGEAASSAPAPMAARDLLRRFHRVYPRIENYLRE 1036 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 Q + + + SGR + + NR Sbjct: 1037 TRQEALR--------------------------SFAVETLSGRKSLIAEKDANRRRQRAI 1070 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----------AGYDIVLTVHDEI 632 + VQ + D+L M + A +V+++HDE+ Sbjct: 1071 AQA---------------VQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLALVMSIHDEL 1115 Query: 633 VCETPDTDEFNASM-LYHLMT-SNPSWAKGLPL 663 V P + ++ +PL Sbjct: 1116 VYAVPRVAIEEVVRGVQRILEDQARVLRLAVPL 1148 >gi|32442279|gb|AAP82210.1| DNA polymerase [Podovirus SOG] Length = 406 Score = 104 bits (259), Expect = 5e-20, Method: Composition-based stats. Identities = 53/438 (12%), Positives = 105/438 (23%), Gaps = 105/438 (23%) Query: 95 CTLVLARSNGLP----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 TL+L+R +L A+ + + Sbjct: 1 DTLILSRLADPTRKGGHSLNALS---------------------------GNEKIDFHDF 33 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLS--------SKEQELWYLDQTINDRGYCVDVA 202 YCK DV + +++ +L+ E ++ + G+ +D Sbjct: 34 STYTPEMLTYCKQDVAINEKVYLQLKDELSNFGKASIQLEHQMQAIVCEQEKNGFMLDTD 93 Query: 203 LAHTLNQIVDVERTKLDQELESLT------------------------------------ 226 +A + E +++ E++ Sbjct: 94 IAEEIYTTCLRETNRIEAEIKEFMVPIAVPVKEVIIKRKKDGSIYSNQLLEGCNVQGDYT 153 Query: 227 --YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKLTPQAIQVFNN 279 + ++ L T++ L++ P+A++ Sbjct: 154 KIAWEEFNLGSPVQVNKRL-DRLDWKPTVKTKSGNSYKICPENLATIPDTAPEAVKGLKA 212 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ GR+ G + GA T R + N+P + + Sbjct: 213 WKVLE-TRWKLAQEWLQKSQETGRVHGRVILTGA-VTHRAAHQGPNMANIPSVPHGKDGI 270 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + + R EGK LV D AGI+ RVLA + Sbjct: 271 LWKME-------------GMYGAECRQAFKVPEGKLLVGTDAAGIQLRVLAHYMNDP--- 314 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 + + +FN R K A G + Sbjct: 315 ----IYTEQVIDGDIHTFNKEALGRFCKDRPTAKTFIYAFLLGAGTGMIASILGCNNRQA 370 Query: 460 NTFAHLVKTNSAPEEWED 477 N + Sbjct: 371 NEAMSNFYEAIPALKKLK 388 >gi|322499407|emb|CBZ34480.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 1171 Score = 104 bits (258), Expect = 6e-20, Method: Composition-based stats. Identities = 59/401 (14%), Positives = 103/401 (25%), Gaps = 115/401 (28%) Query: 315 RTGRWSGCVFPPQNLPR----------------------------------PSRSHEE-- 338 TGR + QNLP+ P+ + Sbjct: 813 STGRIFSALPNVQNLPKQPPRTTFPIHALSATPSRNSGGDESLRPYGYVDPPTEEDVDRW 872 Query: 339 --LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 L + S P + +R A G L D +E R+LA ++G+ Sbjct: 873 LSLAEAAAVDQASSVQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGDA 932 Query: 397 WKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + D+ A + V QR KV+ L Y G ++ Sbjct: 933 ALQEHLSANVDVLALVTASVLRLPSIDHVRPQQRQAVKVIVYGLLYGMGPESMDV----- 987 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + E F Q+ H A A + + + + + Sbjct: 988 -----------------RIKKINEEFATSEQQQHRGEAASSAPAPMAARDLLRRFHRVYP 1030 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R+ E Q + + + SGR + + Sbjct: 1031 RIENYLRETRQEALR--------------------------SFAVETLSGRKSLIAEKDA 1064 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----------AGYDI 624 NR + VQ + D+L M + A + Sbjct: 1065 NRRRQRAIAQA---------------VQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLAL 1109 Query: 625 VLTVHDEIVCETPDTDEFNASM-LYHLMT-SNPSWAKGLPL 663 V+++HDE+V P + ++ +PL Sbjct: 1110 VMSIHDELVYAVPRVAIEEVVRGVQRILEDQARVLRLAVPL 1150 >gi|148724470|ref|YP_001285436.1| DNA polymerase [Cyanophage Syn5] gi|145588115|gb|ABP87934.1| DNA polymerase [Synechococcus phage Syn5] Length = 583 Score = 104 bits (258), Expect = 7e-20, Method: Composition-based stats. Identities = 80/560 (14%), Positives = 140/560 (25%), Gaps = 135/560 (24%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M L D ET + C A D D + ++ Q+LKEA Sbjct: 1 MR-LVFDIETDGLLRGLSVIHCIVARD---------LDTNEEHRFEPHQTKAGLQLLKEA 50 Query: 61 LENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARS----------------- 102 + + HN ++ +K + + TL+L+R Sbjct: 51 --DE---LWGHNIVGYDIEAIKELYPKWTTKAKLYDTLILSRLFFTDLLDRDFRSKPANM 105 Query: 103 ---NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 +L+A G L + K E GK+L + E Sbjct: 106 PGNLYGRHSLEAWGHRLGV--HKSEFGKQLDGDWSTYSP-----------------EMLE 146 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWY-------LDQTINDRGYCVDVALAHTLNQIVD 212 YC DVTV+ ++ + EP + + + G+ DV A L + Sbjct: 147 YCAQDVTVSVQVAQMFEPKLEQYADCIDTEHRLATIMAWQEREGFPFDVTAAQQLESRLR 206 Query: 213 VERTKLDQELES--------------------------LTYGLVSSSRCLEKLKTWLFLE 246 E L ++ S + + + Sbjct: 207 TELDALSDQMRSTFLFVDGGTFTPRRNNKPQGYIADAPMCKLKEFNPTSRHHIAWAFQQF 266 Query: 247 TGLHLE----DLTETTCQRVLSSNK-KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + + L++ ++ + + A K N ++ + Sbjct: 267 RNWEPKEFTDSGKPKIDEPTLTAIGTDEAKAFARILELQKHLGQLAEGK-NAWLKLESK- 324 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 GR+ + + TGR + +P S Sbjct: 325 GRVHHSCVLN--TNTGRQAHMRPNLAQVPSASEY-------------------------- 356 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 R+ + + V AD +G+E R LA A T + Sbjct: 357 ---RALFGPGDSRVQVGADASGLELRCLAHYL-------APFDNGSFAETVVNGDIHTEL 406 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 A + R GK + L Y GG A + + D Sbjct: 407 ASIYGTDRKSGKGVTYCLIYGGGDHKLGSTAGAS--KAQASKKGKEIRGRIMRDLDGFAA 464 Query: 482 CRWMQENHPEHAIEDLFIGT 501 + G Sbjct: 465 LSDAVSRRARTGVLRGLDGR 484 Score = 40.5 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 9/89 (10%) Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGK---LTENIVQAVSRDILAEGMMN----ATKA- 620 D + R+ R GK ++Q+ I + ++ +A Sbjct: 464 ALSDAVSRRARTGVLRGLDGRPIRLQGKSHAALNYLLQSAGAVICKQWLLRSYELLDEAN 523 Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLY 648 Y + VHDE+ + A++L Sbjct: 524 IDYWPLAFVHDELQISVAPSQAEMATLLI 552 >gi|32442283|gb|AAP82212.1| DNA polymerase [Podovirus SOG] Length = 409 Score = 104 bits (258), Expect = 7e-20, Method: Composition-based stats. Identities = 67/453 (14%), Positives = 116/453 (25%), Gaps = 113/453 (24%) Query: 95 CTLVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 TLVL+ +LK+ G L K E + Sbjct: 1 DTLVLSSLFNPMRKGGHSLKSWGIRL--DEYK-GEFNDWSQYS----------------- 40 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPL--------SSKEQELWYLDQTINDRGYCVDVA 202 +YCK DV VT +++ L E ++ + G+ +D Sbjct: 41 ----EEMKQYCKQDVKVTELVYQELLKEGSKFSQASIDLEHQVHAIMCEQEANGFLLDTN 96 Query: 203 LAHTLNQIVDVERTKLDQELESLTY----------------------------------- 227 LA + E T+++++++ Sbjct: 97 LAQEIYTTCLAETTRIERDIKEFMVPIAVPVKEVNLKYKKDGSIFANQLLEGCNVQGDYT 156 Query: 228 ---GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKLTPQAIQVFNN 279 + ++ L G T+ L++ PQA++ Sbjct: 157 KIMWEEFNLASQPQINKRLN-RLGWKPTVKTKGGDSYKICPENLATIPDTAPQAVKGLKK 215 Query: 280 RMRA---SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + A L DGR+ G + GA T R + N+P Sbjct: 216 WKVLETRWKLASEWLQG----SQVDGRVHGQVITPGA-VTHRAAHRGPNMANIPSVPHGK 270 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + + + + + R EGK LV D AGI+ RVLA + Sbjct: 271 DGILWKMD-------------GMYAAECRQAFTVPEGKLLVGTDAAGIQLRVLAHYMNDP 317 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + + +FN+ R K A G ++ Sbjct: 318 -------VYTEQVIDGDIHTFNMNALGKFCKDRPTAKTFIYAFLLGAGVGKIAEI----- 365 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 L N + E + Sbjct: 366 LGCNAAQANKSMQNFYEALPTLKRLKSEAARAA 398 >gi|221066661|ref|ZP_03542766.1| DNA-directed DNA polymerase [Comamonas testosteroni KF-1] gi|220711684|gb|EED67052.1| DNA-directed DNA polymerase [Comamonas testosteroni KF-1] Length = 766 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 67/558 (12%), Positives = 126/558 (22%), Gaps = 156/558 (27%) Query: 174 RLEPLSSKEQELWYLDQ--------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P W + I+ G VD+ ++ K + Sbjct: 306 HADPHRVMMNRGWEVCATNLPTQLVQISCNGMPVDIDRLESIRCDAAAVVAKAASTVVEH 365 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV-----------LSSNKKLTPQAI 274 L L + E L + + +T + L S A+ Sbjct: 366 IPSLYEIQARLSAMSGGATDEIRLAVGEYARSTGVELDASDNGLPSISLKSLSNKGAIAL 425 Query: 275 QVFNNRMRASRSAVLKL--NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + + L+ +++ +GRL + + TGR + Sbjct: 426 PGIAAWRDLCDARRTLASCDDLIASVSPNGRLHPLFGYD--TVTGRLTAKRP-------- 475 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +RS V A EG ++ AD + IE R+ A Sbjct: 476 -----------------------ASMAMDQRLRSAVTAPEGSVIISADYSQIELRIAACF 512 Query: 393 AG--------------------EQWKLKAFETGED-----------LYVTTYARSFNVAP 421 A + A ++ Y+ Sbjct: 513 AEKMRAGTGLPGMLATAFRTGVDPHLTTALQSVRQRGDIDFTGNAAAYIAGLCDEERCEL 572 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMA-STTGLNLNTFAHLVKTNSAPEEWEDAEN 480 +R K L Y +F + GL ++ + + + Sbjct: 573 KSRLFVERDTAKAQNFGLLYGMKDSSFWEYGRLAYGLTWTFEEAQAARDAWFKMYPEIAL 632 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 Q A E + + H V + Sbjct: 633 LHDSYQSTFSAAAKET------------LFLKAHDGVFQ--------------------- 659 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 + SGR + T L Sbjct: 660 -----------TTTSRVVSGATLSGRKV---------------------TATSPFLLLSY 687 Query: 601 IVQAVSRDILAEGMMNATKAGYD-IVLTVHDEIVCETPDT-DEFNASMLYHLM---TSNP 655 Q DI+ + + +V VHDE+V P++ + A+ + M Sbjct: 688 ACQGTGADIIISAIASMDHGTRRHLVNVVHDELVLCVPESCSQREAAEVRRAMLSAEDAV 747 Query: 656 SWAKGLPLKAEGYESKRY 673 +P + + Sbjct: 748 FAQYNIPASVDITVGNSW 765 >gi|307327074|ref|ZP_07606264.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113] gi|306887372|gb|EFN18368.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113] Length = 562 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 95/629 (15%), Positives = 157/629 (24%), Gaps = 152/629 (24%) Query: 76 ERTVLK-------ACFNLDIPIHRWICTLVLARSN-------GLPSALKA-VGEALKLSS 120 +R V + + + R G P +L A L Sbjct: 49 DRWVWRSTAEVYPRLLAAGVRVERAYDIEAAEALLLGHEGRSGAPRSLAAAWARLRGLPV 108 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 + + + E P L Y + V L + Sbjct: 109 PEDPPPRA---AGGQPSLFEPGPPPLPPGADPLETLLAVYAEQLVRTEAAEHPDRMRLLT 165 Query: 181 KEQ-ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV-----SSSR 234 + + + G L + ER E + L +R Sbjct: 166 TAESAGMLIAAEMRRAGVPWSADRHRKLLDELLGERYPGGLEPQRLVELAEEVSRAFGTR 225 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 L + G L +T L P + + R Sbjct: 226 VRPDLPAEVVKAFGRAGITLG-STRAWELERI--DHPAVEPLLRY-KKLYRLHTAHGWAW 281 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 +++ DGR R G + +GRW+ +P+ Sbjct: 282 LQSWVRDGRFRPEY-LPGGTVSGRWTTNGGGALQIPK----------------------- 317 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 VR V+A G +LVVAD +E RVLA ++ + ++ +G DLY T Sbjct: 318 --------VVRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGSGRDLYATLS- 368 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 + +R + K+ L Y T+G L A L Sbjct: 369 -------DRAFSGRRELAKLALLGAVY----------GQTSGDGLKHLAAL--------- 402 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 R++ + +A E Sbjct: 403 ------------------------------------RRRFPAAVAY---VDEAAR-AGEE 422 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 G+ + R P V ++ LP + + + TR Sbjct: 423 GRLVRTWLGRTCPPVGGGAEEPADEAGLP----REQEEPSYGSTASARARGRFTR----- 473 Query: 595 GKLTENIVQAVSRD--ILAEGMMN--ATKAGYD--IVLTVHDEIVCETPDTDEFNA-SML 647 +VQ + D +L + T AG IV HDE++ P + + Sbjct: 474 ----NFVVQGSAADWALLMLAALRRSLTGAGLRAEIVFFQHDEVIVHCPQEEADTVREAI 529 Query: 648 YHLMTSNPSWAKG-----LPLKAEGYESK 671 + A G PL E Sbjct: 530 AEAGETAGRIAFGPTPVRFPLTMAAVECY 558 >gi|284032329|ref|YP_003382260.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836] gi|283811622|gb|ADB33461.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836] Length = 551 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 58/381 (15%), Positives = 101/381 (26%), Gaps = 121/381 (31%) Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 P + + R + + DGR R G + +GRW Sbjct: 252 DHPAVEPLIEY-KKLYRIYTANGWSWLNDWVHDGRFRPGF-VPGGTVSGRWITNGGGGLQ 309 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +P+ +R V+A G +LVVAD + +E RV Sbjct: 310 IPK-------------------------------VIRRAVVADPGWRLVVADASQLEPRV 338 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++ + ++ DLY + RA+ K+ L Y Sbjct: 339 LAAISRDPGLMEVAGNAADLYKAVS--------DKAFSGDRAMAKLAVLGAIY------- 383 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 T+G L A L Sbjct: 384 ---GQTSGDGLKNLAAL------------------------------------------- 397 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 R++ + ++ + E G+ + R P PSG L Sbjct: 398 --RKRFPKAVAYVDD----AARAGEEGRLVRTWLGRTCP---------------PSGSQL 436 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDI 624 + + + R G +VQ + D M ++ ++ Sbjct: 437 DSAQLEGPPADEPQVDSRRARAR--GRFTRNFVVQGSAADWALLMMAALRQSIATYKAEL 494 Query: 625 VLTVHDEIVCETPDTDEFNAS 645 V HDE++ P + + Sbjct: 495 VFFQHDEVIVHCPAEEADQVA 515 >gi|218506492|ref|ZP_03504370.1| DNA polymerase I [Rhizobium etli Brasil 5] Length = 156 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 19/156 (12%) Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----- 179 G I + N Y D VT ++ L+P Sbjct: 6 LGHTPIPY----KDVAGSGRANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGL 61 Query: 180 -----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E+ L + + RG VD + L+ + +L+ E+ +L + Sbjct: 62 TSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYTLAG-ERFNIG 120 Query: 235 CLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266 ++L LF + GL T+ +T VL Sbjct: 121 SPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDL 156 >gi|32442293|gb|AAP82217.1| DNA polymerase [Podovirus SOG] Length = 400 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 62/440 (14%), Positives = 116/440 (26%), Gaps = 121/440 (27%) Query: 95 CTLVLARSNGLP----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 TLVL+ +LKA GE + + + EG + + Sbjct: 1 DTLVLSSLANPSLEGGHSLKAWGERI-HNLKGDYEG------------------GWETFN 41 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE--------QELWYLDQTINDRGYCVDVA 202 E YC+ DV + +++++RLE ++ + G D Sbjct: 42 PEMLA----YCQQDVRLLKDLYRRLEVQLEDFDEASIELEHKVAEIIYRQEQTGVLFDER 97 Query: 203 LAHTLNQIVDVERTKLDQELESLT------------------------------------ 226 + L + + ++ E+ + Sbjct: 98 KGYELLAELKEKVHEIVLEVREVFKPLPVWKSLQVLKNPLKKDGNPSVAYQKQLDRGAHY 157 Query: 227 ---------YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAI 274 + +++ +L E + + ++VL+ P+A Sbjct: 158 DSDGDWGYKDYPEFNLGSRQQVSRYLQHFGWSPTEWTDKGSVIVNEKVLADV--DIPEAK 215 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + V + +EA+ DGR+ G + GA TGR + +P Sbjct: 216 MIMEYFTISK--RVAMVKAWLEAVGDDGRIHGRVNSCGA-VTGRMTHSKPNLAQVP---- 268 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 + R I EGK LV D +G+E R+LA Sbjct: 269 --------------------AIYSPYGEECRELWIVPEGKCLVGIDASGLELRMLAHYMN 308 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ R K A Y GG ++ Sbjct: 309 DKDY---------TDEILNGDIHTANQLAAGLQSRDQAKTFIYAFLYGGGDGKIGEIVGG 359 Query: 455 TGLNLNTFAHLVKTNSAPEE 474 + N+ Sbjct: 360 KAKDGQRLKAKFLDNTPALR 379 >gi|323512097|gb|ADX87557.1| DNA polymerase [Vibrio phage ICP3_2009_A] Length = 678 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 94/783 (12%), Positives = 170/783 (21%), Gaps = 219/783 (27%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-WDCVHDPVMPQVLKE 59 M L D ET +D C + D + + WD + L E Sbjct: 1 MKLLLSDIETNGLLDTVDKFHCAWTVD-------YFTGEWKAYRPWDF---EQYIKDL-E 49 Query: 60 ALENTDVTIVAHN-SYFERTVLKA----CFN--LDIPIHRWICTLVLARSNGL------- 105 A IV HN ++ LK F L+IP + TLV++R Sbjct: 50 ACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLHSNLKDTDA 109 Query: 106 --------------PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP--- 148 +LKA G L E + F + C D Sbjct: 110 GLLRSGRITGKLYGSHSLKAWGMRLGELKGDYGEQEAAWVEFNEPMMDYCKQDVQITLKL 169 Query: 149 ------------------------NHREAW------------------RLFGEYCKGDVT 166 H AW RL+ E Sbjct: 170 FEKFMGDTWYFPNGADGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLYAEVAGRRAE 229 Query: 167 VTREIFKRLEPL--------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + E+ + + Y ++ + + + L Sbjct: 230 ILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKKPTLAKTLYL 289 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQ- 275 + + + + L + + S + Sbjct: 290 KDAPFTPVQHVTFNPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLSLVIEHKLVPEE 349 Query: 276 ------VFNNRMRASRS--AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + + + + M+ G + G + GA TGR + Sbjct: 350 FLPKVELIKEYLVIQKLIGQLAEGDNAWLRMDKGGYIHGQVNPNGA-VTGRATHSYPNLA 408 Query: 328 NLPR-PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 +P E + P V D +G+E Sbjct: 409 QVPSIRKYKGVECRSLFGAEHHRDYHTGKP-----------------WIQVGVDASGLEL 451 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARS-FNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R L + + T + + T + + K Y GA Sbjct: 452 RCLGHFMAKFDDGEYINTILNGDIHTQNQIAAGLPTRDN-------AKTFIYGFLYGAGA 504 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + ++ G Sbjct: 505 QKIGEIVGKFGEEGKKAGA----------------------------------------E 524 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + K + + ++ L ++ A + + K + + G Sbjct: 525 LIKKFLENTPAIASLREQVADALIKEAKWVGGTQQIKWKRK------------WIKGLDG 572 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621 R + R ++Q+ I + ++ AG Sbjct: 573 RKVHVRSPHA---------------------ALNTLLQSAGALICKKWIVEWDKGMQAAG 611 Query: 622 YD--------IVLTVHDEIVCETP--DTDEFNASMLYHLMTSNPS-WAKGLPLKAEGYES 670 Y + VHDE + E + M W PL EG Sbjct: 612 YKHGWDGDYCFMAWVHDEAQLACRTQEIAEDAVRIAQEAMRRVGEHWNFRCPLDTEGKIG 671 Query: 671 KRY 673 + Sbjct: 672 ANW 674 >gi|33322851|gb|AAQ07161.1|AF496471_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis] Length = 95 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 16/100 (16%) Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635 R +Q + DI+ M+N K +V+ VHDE++ + Sbjct: 1 NVRSFAERTAINSP------IQGSAADIMKIAMINVQKKLDELGLKTKMVVQVHDELIFD 54 Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673 P + + +M + +PL A+ G+ Y Sbjct: 55 VPADELETIXKIVPSVMQAAVK--LDVPLVADAGWGHDWY 92 >gi|84662633|ref|YP_453598.1| putative DNA directed DNA polymerase [Xanthomonas phage OP1] gi|84570682|dbj|BAE72745.1| putative DNA directed DNA polymerase [Xanthomonas oryzae phage OP1] Length = 793 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 63/497 (12%), Positives = 127/497 (25%), Gaps = 108/497 (21%) Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 D VD + + + K + + + +S + + ++F L + Sbjct: 313 DPAEVVDGSELYYQIDRYAGGKQKGLPKTKKVKVPDLSKPKMSVVEREYIFPGFVQPLPE 372 Query: 254 ------LTETTCQRVLSSNKKLTPQAIQVFNNRMRA--SRSAVLKL----------NTLV 295 T + V + V +A ++ ++ Sbjct: 373 WQGSAPGQYKTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYTVDPETGETKGML 432 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + SDG + L + + TGR S + QNLP+ +S Sbjct: 433 SLVGSDGIVHHQL-QMVNTVTGRLSSALPNLQNLPKGDKS-------------------- 471 Query: 356 PLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 V+ ++ G +V +D +E V ++G+ + G D++ A Sbjct: 472 -------EVKKLFVSRFPGGFIVQSDFTALEIYVQGNLSGDSALIADLRAGLDMHCKRLA 524 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 + V+ K + ++ Sbjct: 525 QKEGVSYD----YVFERAK--------------------------DKKHIDYIVWNSKRS 554 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 +F R A + + + + + V E + E Sbjct: 555 KAKGFSFQRAYGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGVPEYNKRTMKELE----- 609 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ---LTR-- 589 R +P + + L G +R R + T R Sbjct: 610 --------RNLIPSKMYIASSYEVGVSLNLG-KSYFRTPDGKRYTMYQTQAPKWLWEREG 660 Query: 590 --EYTYGGKLTENIVQAVSRDILAEGMMNA----TKAG-----YDIVLTVHDEIVCE-TP 637 VQ + + M G IV TVHD + P Sbjct: 661 VQLTFSSTTTKNYPVQGTGGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHDAAYIDSAP 720 Query: 638 DTDEFNASMLYHLMTSN 654 + + + ++L+ M Sbjct: 721 EVAKESMALLHACMEEA 737 Score = 60.5 bits (145), Expect = 8e-07, Method: Composition-based stats. Identities = 34/284 (11%), Positives = 69/284 (24%), Gaps = 39/284 (13%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCV--ILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L D ET L K + + + F + + H +P+ + Sbjct: 19 LAWDLET-GTRTLHKRKASPFDIQNDIWAVGFGRSWSESKGYHKAV-HG--IPEDWFRVI 74 Query: 62 ENTDVTIVAHNSYFERTVLKA-------CFNLDIPIHRWICTLVLARSNGLP------SA 108 N + N F+ + + ++ Sbjct: 75 LNNCRVLAGFNIKFDLLYALRDKDNHTAWMQWVTDGGKVWDCQLAEYLLQGMAQEWQIAS 134 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V S K K E + + + GE GD+ T Sbjct: 135 MDDVAPLYG-GSCKDHAVKSC------WENGIDTGEIDPDMLMDYLLGTGEDNLGDIGNT 187 Query: 169 REIFKRLEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 IFK + G VDVA + Q + + + Sbjct: 188 ANIFKGQLKLAKDRGQIASITLNNAALLYTVEAELNGMYVDVAKGDEIRQQLLAKLVHIS 247 Query: 220 QELESLTYGL---VSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260 +++ + ++ LF G+ + ++ + Sbjct: 248 EQVNKGLPEDLPFEFNWASPKQRSALLFG-GGVKYKSREQSRDE 290 >gi|68299732|ref|YP_249581.1| DNA polymerase [Vibriophage VP4] gi|66473271|gb|AAY46280.1| DNA polymerase [Vibriophage VP4] Length = 678 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 97/783 (12%), Positives = 178/783 (22%), Gaps = 219/783 (27%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-WDCVHDPVMPQVLKE 59 M L D ET +D C + D + + WD + L E Sbjct: 1 MKLLLSDIETNGLLDTVDKFHCAWTVD-------YFTGEWKAYRPWDF---EQYIKDL-E 49 Query: 60 ALENTDVTIVAHN-SYFERTVLKA----CFN--LDIPIHRWICTLVLARSNGL------- 105 A IV HN ++ LK F L+IP + TLV++R Sbjct: 50 ACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLHSNLKDTDA 109 Query: 106 --------------PSALKAVGEALKLSSQKMEEGK-------ELIARFCK--------- 135 +LKA G L E + E + +CK Sbjct: 110 GLLRSGRITGKLYGSHSLKAWGMRLGELKGDYGEQEAAWIEFNEPMMDYCKQDVQVTLKL 169 Query: 136 -----------GETHECLYDRNKPNHREAW------------------RLFGEYCKGDVT 166 + L + H AW RL+ E Sbjct: 170 FEKFMGDTWYFPNGVDGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLYAEVAGRRAE 229 Query: 167 VTREIFKRLEPL--------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + E+ + + Y ++ + + + L Sbjct: 230 ILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKRPTLAKTLYL 289 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-------TETTCQRVLS-SNKKLT 270 + + + + L + + + T V+ Sbjct: 290 KDAPFTPIQHVTFNPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLSLVIEHKLIPEE 349 Query: 271 PQAI-QVFNNRMRASRS--AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 ++ + + + + + M+ G + G + GA TGR + Sbjct: 350 FIPKVELIKEYLVIQKLIGQLAEGDNAWLRMDKGGYIHGQVNPNGA-VTGRATHSYPNLA 408 Query: 328 NLPR-PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 +P E + P V D +G+E Sbjct: 409 QVPSIRKYKGVECRSLFGAEHHLDYHTGKP-----------------WIQVGVDASGLEL 451 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARS-FNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R L + + T + + T + + K Y GA Sbjct: 452 RCLGHFMAKFDDGEYINTILNGDIHTQNQIAAGLPTRDN-------AKTFIYGFLYGAGA 504 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + ++ G Sbjct: 505 QKIGEIVGKFGEEGKKAGA----------------------------------------E 524 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + K + + ++ L ++ A + + K + + G Sbjct: 525 LIKKFLENTPAIASLREQVADALIKEAKWVGGTQQIKWKRK------------WIKGLDG 572 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AG 621 R + R ++Q+ I + ++ K AG Sbjct: 573 RKVHVRSPHA---------------------ALNTLLQSAGALICKKWIVEWDKGMRAAG 611 Query: 622 YD--------IVLTVHDEIVCETP--DTDEFNASMLYHLMTSNPS-WAKGLPLKAEGYES 670 Y + VHDE + E + M W PL EG Sbjct: 612 YKHGWDGDYCFMAWVHDEAQLACRTQEIAEDAVRIAQEAMRRVGEHWNFRCPLDTEGKIG 671 Query: 671 KRY 673 + Sbjct: 672 ANW 674 >gi|325171294|ref|YP_004251265.1| DNA polymerase [Vibrio phage ICP3] gi|323512000|gb|ADX87462.1| DNA polymerase [Vibrio phage ICP3] gi|323512146|gb|ADX87605.1| DNA polymerase [Vibrio phage ICP3_2008_A] gi|323512194|gb|ADX87652.1| DNA polymerase [Vibrio phage ICP3_2007_A] Length = 678 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 95/783 (12%), Positives = 174/783 (22%), Gaps = 219/783 (27%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-WDCVHDPVMPQVLKE 59 M L D ET +D C + D + + WD + L E Sbjct: 1 MKLLLSDIETNGLLDTVDKFHCAWTVD-------YFTGEWKAYRPWDF---EQYIKDL-E 49 Query: 60 ALENTDVTIVAHN-SYFERTVLKA----CFN--LDIPIHRWICTLVLARSNGL------- 105 A IV HN ++ LK F L+IP + TLV++R Sbjct: 50 ACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLHSNLKDTDA 109 Query: 106 --------------PSALKAVGEALKLSSQKMEEGK-------ELIARFCK--------- 135 +LKA G L E + E + +CK Sbjct: 110 GLLRSGRITGKLYGSHSLKAWGMRLGELKGDYGEQEAAWVEFNEPMMDYCKQDVQVTLKL 169 Query: 136 -----------GETHECLYDRNKPNHREAW------------------RLFGEYCKGDVT 166 + L + H AW RL+ E Sbjct: 170 FEKFMGDTWYFPNGADGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLYAEVAGRRAE 229 Query: 167 VTREIFKRLEPL--------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + E+ + + Y ++ + + + L Sbjct: 230 ILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKKPTLAKTLYL 289 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQ- 275 + + + + L + + S + Sbjct: 290 KDAPFTPVQHVTFNPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLSLVIEHKLVPEE 349 Query: 276 ------VFNNRMRASRS--AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + + + + + M+ G + G + GA TGR + Sbjct: 350 FLPKVELIKEYLVIQKLIGQLAEGDNAWLRMDKGGYIHGQVNPNGA-VTGRATHSYPNLA 408 Query: 328 NLPR-PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 +P E + P V D +G+E Sbjct: 409 QVPSIRKYKGVECRSLFGAEHHRDYHTGKP-----------------WIQVGVDASGLEL 451 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARS-FNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R L + + T + + T + + K Y GA Sbjct: 452 RCLGHFMAKFDDGEYINTILNGDIHTQNQIAAGLPTRDN-------AKTFIYGFLYGAGA 504 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + ++ G Sbjct: 505 QKIGEIVGKFGEEGKKAGA----------------------------------------E 524 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + K + + ++ L ++ A + + K + + G Sbjct: 525 LIKKFLENTPAIASLREQVADALIKEAKWVGGTQQIKWKRK------------WIKGLDG 572 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621 R + R ++Q+ I + ++ AG Sbjct: 573 RKVHVRSPHA---------------------ALNTLLQSAGALICKKWIVEWDKGMQAAG 611 Query: 622 YD--------IVLTVHDEIVCETP--DTDEFNASMLYHLMTSNPS-WAKGLPLKAEGYES 670 Y + VHDE + E + M W PL EG Sbjct: 612 YKHGWDGDYCFMAWVHDEAQLACRTQEIAEDAVRIAQEAMRRVGEHWNFRCPLDTEGKIG 671 Query: 671 KRY 673 + Sbjct: 672 ANW 674 >gi|153840366|ref|ZP_01993033.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] gi|149745971|gb|EDM57101.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] Length = 166 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 23/129 (17%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S + ++ +F D+ HD + Sbjct: 36 AFDTETDSLDYMV----------ANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVL 85 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 + LK LE+ V N ++ +VL +++ ++ T++ + Sbjct: 86 EQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKY-DTMLASYVYNSVGGKHDMDS 143 Query: 114 EALKLSSQK 122 AL+ Sbjct: 144 LALRFLQHS 152 >gi|225420465|ref|ZP_03762768.1| hypothetical protein CLOSTASPAR_06810 [Clostridium asparagiforme DSM 15981] gi|225040896|gb|EEG51142.1| hypothetical protein CLOSTASPAR_06810 [Clostridium asparagiforme DSM 15981] Length = 110 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 18/116 (15%) Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---- 620 GR ++ + R +Q + D++ M+ + Sbjct: 2 GRRRPIPELKSANFMQRQF---GERVAMNSP------IQGTAADVMKIAMIRVDRELKKR 52 Query: 621 --GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673 IVL +HDE++ ET ++ +L M + L+ + + Sbjct: 53 NMKSRIVLQIHDELLVETERSEVEAVKALLEEQMKGAAD--LKVALEVDAKVGDSW 106 >gi|71902389|ref|ZP_00684353.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1] gi|71727877|gb|EAO30114.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1] Length = 300 Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 130/285 (45%), Gaps = 43/285 (15%) Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 L D+ + T +R L + L ++ + R +AS ++ K L+ + DGRLRGTLQF Sbjct: 13 LPDMQQHTVERCL-DDPLLPETVRELLSIRRQASTTSTAKYQALLNCTSGDGRLRGTLQF 71 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCV 368 GASRTGRW+G +F P NLPRP+ S + I + D + + S +RSC+ Sbjct: 72 NGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCL 131 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGE--------------------------------- 395 IA KKLVVADL+ IE RVLAW+AGE Sbjct: 132 IAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTWHSGEAITHGALRG 191 Query: 396 -------QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 + + G+D+Y YA SF +AP VTK QR IGKV ELALGY GG AF Sbjct: 192 APITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAF 251 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 A+ ++L A + + ++ Sbjct: 252 AAFAAMYHIDLEAMAEQAALPPLLDTAARPFPHMKLLRRASNITG 296 >gi|163814577|ref|ZP_02205966.1| hypothetical protein COPEUT_00728 [Coprococcus eutactus ATCC 27759] gi|158450212|gb|EDP27207.1| hypothetical protein COPEUT_00728 [Coprococcus eutactus ATCC 27759] Length = 115 Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S + L K G +Y E + ++LFA+ D+ PV++ D +P+ + Sbjct: 1 MKTLSIDIETYSDVPLQKTGAYRYVESPNFEILLFAYSTDNQPVQVIDPACGEQIPKEVF 60 Query: 59 EALENTDVTIVAH 71 ALE+ V A Sbjct: 61 LALEDEFVIKWAW 73 >gi|148727216|ref|YP_001285708.1| p39 [Xanthomonas phage Xop411] gi|116583516|gb|ABK00186.1| p39 [Xanthomonas phage Xop411] Length = 793 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 55/431 (12%), Positives = 107/431 (24%), Gaps = 102/431 (23%) Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRA--SRSAVLKL----------NTLVEAMNSD 301 T + V + V +A ++ ++ + D Sbjct: 379 GQYKTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYTVDPETGETKGMLSLVGKD 438 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 G + L + + TGR S + QNLP+ +S Sbjct: 439 GIVHHQL-QMVNTVTGRLSSALPNLQNLPKGDKS-------------------------- 471 Query: 362 DCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 V++ ++ G +V +D +E V ++G+ + G D++ A+ V+ Sbjct: 472 -EVKTLFVSRFPGGFIVQSDFTALEIYVQGNLSGDSALIADLRAGLDMHCKRLAQKEGVS 530 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 K + ++ + Sbjct: 531 YD----YVFERAK--------------------------DKKHIEYIVWNSKRSKAKGFS 560 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 F R A + + + + + + E + E Sbjct: 561 FQRAYGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGIPEYNKRTMKELE----------- 609 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ---LTR----EYTY 593 R VP + L G +R R + T R Sbjct: 610 --RNLVPSKMYITSSYEAGVSLNLG-KSYFRTPDGKRYTMYQTQAPKWLWEREGVQLTFS 666 Query: 594 GGKLTENIVQAVSRDILAEGMMNA----TKAG-----YDIVLTVHDEIVCE-TPDTDEFN 643 VQ + + M G IV TVHD + P+ + + Sbjct: 667 STTTKNYPVQGTGGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHDAAYIDSAPEVAKES 726 Query: 644 ASMLYHLMTSN 654 ++L+ M Sbjct: 727 MALLHACMEEA 737 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 35/268 (13%), Positives = 66/268 (24%), Gaps = 38/268 (14%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCV--ILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L D ET + L K + + + F + + H +P+ + Sbjct: 19 LAWDLETGTKT-LHKRKASPFDVQNDIWAVGFGRSWQESKGYHKAV-HG--IPEDWFRVI 74 Query: 62 ENTDVTIVAHNSYFERTVLKA-------CFNLDIPIHRWICTLVLARSNGLP------SA 108 N +V N F+ + + + ++ Sbjct: 75 LNNCRVLVGFNIKFDLLYALRDKANHTAWMQWVVEGGKVWDCQLAEYLLQGMAQEWQIAS 134 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V S K K E + + + GE GD+ T Sbjct: 135 MDDVAPLYG-GSCKDHAVKSC------WENGIDTGEIDPDMLMDYLLGTGEDNLGDIGNT 187 Query: 169 REIFKRLEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 IFK + G VDVA + Q + + L Sbjct: 188 ANIFKGQLKLAKERGQIASITLNNAALLYTVEAELNGMFVDVAKGEEIRQQLLAKLMHLS 247 Query: 220 QELESLTYGL---VSSSRCLEKLKTWLF 244 +++ + ++ LF Sbjct: 248 EQVNKGLPEDLPFEFNWASPKQRSALLF 275 >gi|256831724|ref|YP_003160451.1| DNA-directed DNA polymerase [Jonesia denitrificans DSM 20603] gi|256685255|gb|ACV08148.1| DNA-directed DNA polymerase [Jonesia denitrificans DSM 20603] Length = 600 Score = 100 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 72/498 (14%), Positives = 117/498 (23%), Gaps = 151/498 (30%) Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + RE++ P E +Q V A + QEL Sbjct: 193 ALIAREMYAVGVPWDRDHHEALLREQLGERPAVGVRPAALEA-----------VAQELRR 241 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 L + + L L G+ + ++ + P + + Sbjct: 242 LLDAPELNPDSPKDLLRALNSA-GIPVTTTSKWALRE------HRHPALAPLERY-KHLA 293 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 R ++ SDGR R G TGRW LPR Sbjct: 294 RLWTAHGWAWLDEWVSDGRYRPVY-TPGGVVTGRWGADGGGALQLPR------------- 339 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +R A +G V+AD + +E RVLA M+G+ +A Sbjct: 340 ------------------AIRGAARAGDGFTFVIADASQLEPRVLAAMSGDAAMAEAGRG 381 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 + R K L Y G TTG++ Sbjct: 382 ---------GDMYQRIADAGVVPSREHAKYGMLGAMYGG----------TTGVSAQVLPQ 422 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + + A ++G R V +E Sbjct: 423 ------FRQAFPTAMAMVESAARVGERGGQVTTWLG----------RTSPPGVVSHPDES 466 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 A + R + RS Y Sbjct: 467 DDA-----------DVARERRL-------------------RSRSY-------------- 482 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------------IVLTVHDEI 632 G IVQ + + M+ + +V +HDE+ Sbjct: 483 ---------GRFTRNFIVQGSAAEWAMAWMVEIRLRLHQLSLGDPTLSAPSLVFFLHDEV 533 Query: 633 VCETPDTDEFNASMLYHL 650 + TP + + + Sbjct: 534 LIHTPVEWAETVAEVVRV 551 >gi|284009397|emb|CBA76584.1| phage DNA polymerase [Arsenophonus nasoniae] Length = 92 Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 2/88 (2%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 LF D ET S I + CG +YAE+ ++LFA+ ++ V++WD D MP LK + Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHGSVKVWDVTEDKTMPTDLKSYFDA 63 Query: 64 TDVTIVAHN-SYFERTVLKACFNLDIPI 90 ++ V HN F+ +LK N+D+P+ Sbjct: 64 PEILTVWHNGGMFDTVILKHVLNIDLPL 91 >gi|32128451|ref|NP_858986.1| DNA polymerase lacking N-terminal exonuclease domain [Xanthomonas phage Xp10] gi|31788514|gb|AAP58706.1| 38L [Xanthomonas phage Xp10] Length = 794 Score = 100 bits (249), Expect = 9e-19, Method: Composition-based stats. Identities = 55/431 (12%), Positives = 108/431 (25%), Gaps = 102/431 (23%) Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRA--SRSAVLKL----------NTLVEAMNSD 301 T + V + V +A ++ ++ + SD Sbjct: 379 GQYKTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYTVDPETGETKGMLSLVGSD 438 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 G + L + + TGR S + QNLP+ +S Sbjct: 439 GIVHHQL-QMVNTVTGRLSSALPNLQNLPKGDKS-------------------------- 471 Query: 362 DCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 V++ ++ G +V +D +E V ++G+ + G D++ A+ V+ Sbjct: 472 -EVKTLFVSRFPGGFIVQSDFTALEIYVQGNLSGDIALIADLRAGLDMHCKRLAQKEGVS 530 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 K + ++ + Sbjct: 531 YD----YVFERAK--------------------------DKKHIEYIVWNSKRSKAKGFS 560 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 F R A + + + + + + E + E Sbjct: 561 FQRAYGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGIPEYNKRTMKELE----------- 609 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ---LTR----EYTY 593 R +P + L G +R R + T R Sbjct: 610 --RNLIPSKMYIASSYEAGVSLNLG-KSYFRTPDGKRYTMYQTQAPKWLWEREGVQLTFS 666 Query: 594 GGKLTENIVQAVSRDILAEGMMNA----TKAG-----YDIVLTVHDEIVCE-TPDTDEFN 643 VQ + + M G IV TVHD + P+ + + Sbjct: 667 STTTKNYPVQGTGGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHDAAYIDSAPEVAKES 726 Query: 644 ASMLYHLMTSN 654 ++L+ M Sbjct: 727 MALLHACMEEA 737 Score = 64.8 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 35/268 (13%), Positives = 64/268 (23%), Gaps = 38/268 (14%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCV--ILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L D ET L K + + + F + + H +P+ + Sbjct: 19 LAWDLET-GTRTLHKRKASPFDVQNDIWAVGFGRSWQESKGYHKAV-HG--IPEDWFRVI 74 Query: 62 ENTDVTIVAHNSYFERTVLKA-------CFNLDIPIHRWICTLVLARSNGLP------SA 108 N +V N F+ + + ++ Sbjct: 75 LNNCRVLVGFNIKFDLLYALRDKANHAAWMQWVTDGGKVWDCQLAEYLLQGMAQEWQIAS 134 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + V S K K E + + + GE GD+ T Sbjct: 135 MDDVAPLYG-GSCKDHAVKSC------WENGIDTGEIDPDMLMDYLLGTGEDNLGDIGNT 187 Query: 169 REIFKRLEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 IFK + G VDVA + Q + + L Sbjct: 188 ANIFKGQLKLVKERGQIASITLNNAALLYTVEAELNGMFVDVAKGEEIRQQLLAKLMHLS 247 Query: 220 QELESLTYGL---VSSSRCLEKLKTWLF 244 +++ + ++ LF Sbjct: 248 EQVNKGLPEDLPFEFNWASPKQRSALLF 275 >gi|66821457|ref|XP_644204.1| hypothetical protein DDB_G0274421 [Dictyostelium discoideum AX4] gi|60472150|gb|EAL70103.1| hypothetical protein DDB_G0274421 [Dictyostelium discoideum AX4] Length = 519 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 51/362 (14%), Positives = 117/362 (32%), Gaps = 53/362 (14%) Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELE----SLTYGLVSSSRCLEKLKTWLFLET 247 + G C D + ++ + +++ + L + +++ W Sbjct: 1 MEIEGVCCDTSKLDNCSEKILKRIKEINCSVYNEDSKLIREPKINLNSPQQVLDWFGKNL 60 Query: 248 -GLHLEDLTETTCQ----RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 + + T + L+ N K I +N + ++ + ++++ ++ Sbjct: 61 ENYKITSSNKETLAIERVKFLNCNNKKVVDFIDSVSNVRKLTKLNSSYIKIILKSNRTNN 120 Query: 303 --RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 L + TGR S Q+LPR S +L+ I + + + Sbjct: 121 LKFQFSCLWNQTGTTTGRLSSTKPNFQSLPRNSTKLTKLNNIDFDDDDNFNNINNNNNNN 180 Query: 361 SDC------------------------------------VRSCVIASEGKKLVVADLAGI 384 + +R+ I+ EG LV D I Sbjct: 181 NGEKNLYTLLNNDNDGDDDEDDDNIDELNSYNNNNNIINIRNSFISREGYSLVALDYNQI 240 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYAR-SFNVAPAQVTKDQRAIGKVMELALGYQG 443 E R++A + ++ ++ FE+G+D+ +R V P V K+ R K + + Y Sbjct: 241 ELRIMAHYSKDKHLIEYFESGKDVINMMASRLIDGVDPNNVKKEIRDKVKRIVYGILYGI 300 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + K+ L ++ N+ ++E+ +F + + + Sbjct: 301 QKNSLHKL-----LGVSLDEAQEHINNFNLKFEEVSSFIKINSQIKNGKILTIGNRIRRF 355 Query: 504 ER 505 + Sbjct: 356 QD 357 >gi|302845441|ref|XP_002954259.1| hypothetical protein VOLCADRAFT_94989 [Volvox carteri f. nagariensis] gi|300260464|gb|EFJ44683.1| hypothetical protein VOLCADRAFT_94989 [Volvox carteri f. nagariensis] Length = 689 Score = 99.8 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 62/394 (15%), Positives = 114/394 (28%), Gaps = 26/394 (6%) Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E ++ +L + G VD A V L SL G + Sbjct: 272 WLRPQAVQVEMQVCWLLAQMEAVGMAVDTAGLGRQAAAVRQRMEALTSAASSLLGGRTIN 331 Query: 233 SRCLEKLKTWLFLETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 +L L+ E L ++ +T +A QV RM +A + Sbjct: 332 LGSSAQLAVVLYDELELPPPVPQGQRDAAGVSRTAVPGVTERAKQVVGTRMD-GTAAGAE 390 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L+ GR ++ R +W+ + + + Sbjct: 391 LDDGGGGGGGGGRRGPGGRWNRLRRGFQWAVTKY-----EVVVPLGDTTEGSPCGGGGEE 445 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 + + R+ +A G+ LV AD + IE R+LA M+G+ + + G + Sbjct: 446 GAGVLRGDRLVVVARNAFVAPPGRLLVAADYSQIELRLLAHMSGDLRLQELLKRGVEQSE 505 Query: 411 TTYARSF---------------NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 APA V+ R K + + Y A+ + + Sbjct: 506 GRGGGGGGTDAFRHIAASWLRPGTAPADVSSRDREQVKRVVYGIIYGMTAQGLAQQLAEY 565 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ L L S + + F + H + R Sbjct: 566 GVGLEEATAL--RTSFLRHFAGVQAFITSSLYHARRHGYITTGLLGR-RRPIAGVNSSDP 622 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 RV ++H +++ ++ R V + Sbjct: 623 RVVNSIVQIHDELVFEVDSRPEVVRRLVVAVREI 656 >gi|312062862|gb|ADQ12724.1| DNA polymerase A domain-like protein [Acinetobacter phage phiAB1] Length = 494 Score = 99.0 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 53/423 (12%), Positives = 111/423 (26%), Gaps = 92/423 (21%) Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL---------NTLVEAMNSDGRLRGT 307 +T L +A Q + + + + +++ + +G + Sbjct: 107 STGDDAL-DLVAKFTEAAQPLRDMKKLIKDTTTYYLVEDDKGKQSGMLQYVEPNGIIHHQ 165 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 L A+ TGR SG QN+PR + V+ Sbjct: 166 LN-NCATVTGRLSGSKPNLQNVPRDG---------------------------TSKVKEM 197 Query: 368 VIASEGK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 ++ G +LV D + +E LA ++G++ L+ G D++ A + V Sbjct: 198 FVSRFGSDGRLVECDYSALEVVALASISGDKNLLQQLIDGTDMHCYRLAGALGEDYETVF 257 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 + + K F Sbjct: 258 EK------------------------------CHDKSHPEHKKYKQLRTDIKPRAFANQY 287 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + E+ K+ R+ S + +E + + Sbjct: 288 GASAMGISFSTGCSLEEAEQFKETERKLFPESSTF---SERIVRPQVEQNGLSMPMESEL 344 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 V ++ + SG + R + + ++ +Q Sbjct: 345 VNGIWKHFRRG--FFKALSGTCYSF------RQFPKYVKGVGEKYDYKDTQIANYPIQGE 396 Query: 606 SRDILAEGMMNATK---------AGYDIVLTVHDEIVCETPDTDEFNA--SMLYHLMTSN 654 + I+ + + TVHD I + D + + + +M S Sbjct: 397 ASFIVQCACGRVIRWLIGNDFFGGKALPINTVHDCIQLDCADRETAIMVGTKVKEIMDST 456 Query: 655 PSW 657 P W Sbjct: 457 PKW 459 >gi|317124628|ref|YP_004098740.1| DNA-directed DNA polymerase [Intrasporangium calvum DSM 43043] gi|315588716|gb|ADU48013.1| DNA-directed DNA polymerase [Intrasporangium calvum DSM 43043] Length = 557 Score = 98.6 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 76/478 (15%), Positives = 122/478 (25%), Gaps = 130/478 (27%) Query: 188 LDQTINDRGYCVDVALAHTLN----------QIVDVERTKLDQE--LESLTYGLVSSSRC 235 L + G VD A L L + L G + R Sbjct: 161 LCLELERDGLPVDRLAAEDLISAAAGPRPRDDADAARIRALRDQVVLRHARGGDRTDLRN 220 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 ++ L G+ + + VL + P + + R + L Sbjct: 221 PAHVRAML-QSVGVDVPNTR----AWVLEPYRHTHPLVDALLSWRKDERIATTYGYRWLD 275 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 E + D RLRG GR + NLP P Sbjct: 276 EHVGGDDRLRGA-WTACDGAAGRMTAQN-GLHNLPAP----------------------- 310 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R + A V ADL +E RVLA ++ ++ +A + Sbjct: 311 --------LRPAIRAEPQHVFVRADLGQVEPRVLAVVSEDRAFAEATRS----------D 352 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 A R++ KV LA Y + A + Sbjct: 353 DLYAPVADKLGVDRSVAKVAVLAAMYGQRSGAAGEALKDL-------------------- 392 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 E A + + + + T R+ + + A + T G Sbjct: 393 EAAYPVAMGVLDRAYADGVARRPLRTFGGRLIR------------FGSAGDAADPTRAEG 440 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 A + PSG L +R + + R Sbjct: 441 HADQEGE--------------------PSGIRL-----DGDRGAADAARGRFAR------ 469 Query: 596 KLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASMLYH 649 I+Q + ++ A G IVL +HDEI+ P + A Sbjct: 470 ---NAIIQGSAAELFKAWAATVRHAVRPLGGQIVLCLHDEILVHVPRSRAEEARRAVE 524 >gi|302529171|ref|ZP_07281513.1| DNA-directed DNA polymerase [Streptomyces sp. AA4] gi|302438066|gb|EFL09882.1| DNA-directed DNA polymerase [Streptomyces sp. AA4] Length = 566 Score = 98.3 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 67/440 (15%), Positives = 115/440 (26%), Gaps = 114/440 (25%) Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 L ++ + G + + L E G+ + + Q + P Sbjct: 205 KALVDLAAKISAALGGRPVNPDSSASVVRALARE-GIEVPAARKYLLQDI------DHPA 257 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + SR ++ +DGR R +G +GRW+ +PR Sbjct: 258 VAPLLEY-KELSRLHSANGWAWLDEWVTDGRFRPHY-VVGGVVSGRWATRGGGALQIPR- 314 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +RSC A G KLVVAD A +E RVL + Sbjct: 315 ------------------------------ALRSCASADPGWKLVVADGAQLEPRVLTAL 344 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + G + ++A Sbjct: 345 S--------------------------------------------------GDRRLAEVA 354 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + T L L R + A+ G + RQ Sbjct: 355 AATDLYARLAEALFSGTRYVPLRPGDTRDDRSRAKIAMLSAMYGGTSG-EAGPLLALLRQ 413 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + +A E G+ + +R R P PS Sbjct: 414 RFPDAVSY---VERAA-AAGERGERVRSRLGRTSPA--------------PSAAWRALTG 455 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---GYDIVLTVH 629 T R+ +R ++G +VQA + D+ A + +V +H Sbjct: 456 GLTEDEATETRARRASR--SWGRFTRNFVVQASAADLTAVLLATLRGRLPDPAHLVFFLH 513 Query: 630 DEIVCETPDTDEFNASMLYH 649 DE++ P + + Sbjct: 514 DEVIVHAPAELADEVAEIVE 533 >gi|77407374|ref|ZP_00784270.1| DNA polymerase I [Streptococcus agalactiae H36B] gi|77174018|gb|EAO76991.1| DNA polymerase I [Streptococcus agalactiae H36B] Length = 91 Score = 98.3 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 15/94 (15%) Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD 640 R +Q + DIL M+N + ++L VHDEIV E P+ + Sbjct: 2 AERTAINSP------IQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEE 55 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 L M S S +PL A+ + + Sbjct: 56 IGAIRELVTKTMESAIS--LSVPLIADENAGETW 87 >gi|156390270|ref|XP_001635194.1| predicted protein [Nematostella vectensis] gi|156222285|gb|EDO43131.1| predicted protein [Nematostella vectensis] Length = 203 Score = 98.3 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 22/187 (11%), Positives = 45/187 (24%), Gaps = 42/187 (22%) Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 VK + E + + +++ K ++E + Sbjct: 45 VKVDFKERERTKRIVYSVIYGVGRERLGNTLCVEPNEAKGFMESFLGKFPGINEFSRKCI 104 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + N + R + + Sbjct: 105 E--------------------------DCNTNGFVSTIFKRKRWIPHIKSRDF---QIRS 135 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCETPD 638 Q R+ +VQ + D+ M+ A ++L +HDE++ E D Sbjct: 136 QAERQA------VNFVVQGSAADLCKSAMIQIVHALEKDVSLKARLLLQIHDELLLEVAD 189 Query: 639 TDEFNAS 645 TD Sbjct: 190 TDIDRVK 196 >gi|121730180|ref|ZP_01682572.1| DNA polymerase I [Vibrio cholerae V52] gi|121628071|gb|EAX60613.1| DNA polymerase I [Vibrio cholerae V52] Length = 481 Score = 97.9 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 36/129 (27%), Gaps = 23/129 (17%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + + ++ +F + HD + Sbjct: 358 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 407 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113 LK LE+ V N ++ +V+ +++ R T++ + Sbjct: 408 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 465 Query: 114 EALKLSSQK 122 AL+ Sbjct: 466 LALRFLQHS 474 >gi|304654266|gb|EFM47658.1| PsRxL467 [Phytophthora sojae] Length = 471 Score = 97.5 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 45/312 (14%), Positives = 81/312 (25%), Gaps = 67/312 (21%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFA------FGFDDHPVELWD-CVHDPVMPQVL 57 D E + ID+ G + V + + + P D Q+ Sbjct: 89 ACDTE-VAQIDVKAVGP---VGNGVVTCLSLYSGPDVDYGNGPYVWVDNLDSAEGTLQLF 144 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG------LPSALKA 111 K+ LE+ + V HN F+R VL +++ T+ +AR +L+A Sbjct: 145 KDFLESREYLKVWHNYSFDRHVLYNH-GINVQGLG-GDTMHMARLWNTARFQHGGYSLEA 202 Query: 112 VGEALKLSSQK-MEEGK---ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 + L L +K M+E +L KG+ E + + Y D Sbjct: 203 LTADLLLQRKKPMKELFGIPKLRKDGSKGKERIMPTVEELQRFPEFRKRWIRYSVYDAES 262 Query: 168 TREIFKRLEPLSSKEQELW---------------------------------------YL 188 T + + L+ + Sbjct: 263 TWFLHRVLQHKLDQTFWFENAPKTNAAVNAAAAAAAVDEEPQTGSMYDFYRQYIILFGEC 322 Query: 189 DQTINDRGYCVDVALA---HTLNQIVDVERTKLDQELESLTYGLVSSSR--CLEKLKTWL 243 I +G VD+ +L + S + + L Sbjct: 323 LTDIERKGMHVDLEYLAGVEKQALEDRARLERLVLKWASRYCDESERINLYSAAQKQQLL 382 Query: 244 FLETGLHLEDLT 255 F + Sbjct: 383 FAPYYDEKKKKQ 394 >gi|75906055|gb|ABA29401.1| DNA polymerase [Bacteriophage APSE-2] Length = 324 Score = 97.5 bits (241), Expect = 8e-18, Method: Composition-based stats. Identities = 44/78 (56%), Positives = 54/78 (69%) Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657 ENI QA +RD+LA M KAGY+IVLTVHDEI+ E PDT +F+A L L++ N W Sbjct: 246 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 305 Query: 658 AKGLPLKAEGYESKRYRK 675 A LPL A G+E+ RYRK Sbjct: 306 AWDLPLSANGFETYRYRK 323 >gi|47076970|dbj|BAD18421.1| unnamed protein product [Homo sapiens] Length = 312 Score = 97.1 bits (240), Expect = 8e-18, Method: Composition-based stats. Identities = 53/350 (15%), Positives = 110/350 (31%), Gaps = 78/350 (22%) Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 L + + V+ + ++ +L+QE + +L+ Sbjct: 20 LPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAG-ERFLITSNNQLREI 78 Query: 243 LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 LF + L + + R R+ + K + EA+N G Sbjct: 79 LFGKLKL-------------------------HLLSQRNSLPRTGLQKYPSTSEAVNIQG 113 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 + +Q P+ + E+ I+ Sbjct: 114 ISKHPIQITT-----------------PKNFKGKEDKILTISP----------------- 139 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE--TGEDLYVTTYARSFNVA 420 R+ ++S+G + AD + IE R+L ++G+ LK F+ +D++ T ++ +V Sbjct: 140 --RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVP 197 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 QVT R K + A+ Y G + L + S ++++ ++ Sbjct: 198 VEQVTHADREQTKKVVYAVVYGAGKERLAAC-----LGVPIQEAAQFLESFLQKYKKIKD 252 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 F R + +G R+ R+ +L E+ Sbjct: 253 FARAAIAQCHQTGCVVSIMGR---------RRPLPRIHAHDQQLRAQAER 293 >gi|156319560|ref|XP_001618134.1| hypothetical protein NEMVEDRAFT_v1g225484 [Nematostella vectensis] gi|156197578|gb|EDO26034.1| predicted protein [Nematostella vectensis] Length = 758 Score = 97.1 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 58/438 (13%), Positives = 121/438 (27%), Gaps = 68/438 (15%) Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---------KRLEPLSSKEQELWYLD 189 + D + + Y D I +K + + Sbjct: 20 IQWKGDAEAASKSRDIEKYWAYNAKDTWHGARILVQQLRTAAPYTFANYKNKFKLTYPAL 79 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 N G +D+ + L + L + ++++ +++ G Sbjct: 80 -YCNFEGLQIDMEKRNELRTASQKQLDTARSRLHVKFADPAFNPGSWQQVEKYIYNIFGA 138 Query: 250 HLEDLTET---TCQRVLSSNKKLTPQAIQV---FNNRMRASRSAVLKLNTLVEAMNSDGR 303 + ++ T ++ L + + P ++ A ++ + Sbjct: 139 SKPKIGKSKSGTDEKNLLAVAEQHPLLARLTTDILAYREAQKAIGTYYD----------- 187 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 R+ G + N + S +Q I Sbjct: 188 ------------FLRFQGRLLWALN-------PFGTETERMACSASSLWCGTQVQNIPSY 228 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF-NVAPA 422 + ++A +G +L AD + E R A+ A E + A ET + T F N+ Sbjct: 229 AKQMLVADDGYELFEADNSQSEGRTTAYCAQEPALIAALETAGRDFYRTLGTLFFNIPYE 288 Query: 423 QVTKDQRAIG-KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 +VT R K + Y G K F + L +E A Sbjct: 289 EVTDFFRNKVLKRIVHGTNYMMGGKTFTENIGIVVL-----------------YETAPKV 331 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + E + A ++ I + + + + R+ + + E+ T G + Sbjct: 332 GIKLVEIPTKDAEMEMTIRQFAKYLLDLYHEPFPRIRKWYGEIKTEVATT---GYIVSPL 388 Query: 542 KRRDVPLVYMKKDKNNLI 559 + +D N L Sbjct: 389 GHVRKCFGNITRDHNMLR 406 >gi|213581474|ref|ZP_03363300.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 86 Score = 97.1 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 9/84 (10%) Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYH 649 +Q + DI+ M+ +++ VHDE+V E D + ++ Sbjct: 1 AINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQ 60 Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673 LM + +PL E + + Sbjct: 61 LMENCTR--IDVPLLVEVGSGENW 82 >gi|307106798|gb|EFN55043.1| hypothetical protein CHLNCDRAFT_134898 [Chlorella variabilis] Length = 158 Score = 97.1 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 50/181 (27%), Gaps = 53/181 (29%) Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 ++K+ + + V+ L + E + G Sbjct: 1 MGVTPKEAAKLKQEFLESMPGVAAF---LEKVVEDCRQTGYVETLA-------------- 43 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 GR ++ L + K +Q + D++ M+ Sbjct: 44 ---------GRRCPLPNINLQSWRLRGEAER---------KAVNTPMQGSAADVMKAAMI 85 Query: 616 NATKA---------GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNP--SWAKGLPLK 664 ++ G IVL +HDE+V E A+++ M P +PL Sbjct: 86 ALGESLQIGQAGEGGAAIVLMIHDELVIEV-------AAIVRECMEVVPVRKLHLSVPLA 138 Query: 665 A 665 Sbjct: 139 V 139 >gi|221057828|ref|XP_002261422.1| DNA polymerase I [Plasmodium knowlesi strain H] gi|194247427|emb|CAQ40827.1| DNA polymerase I, putative [Plasmodium knowlesi strain H] Length = 1245 Score = 96.7 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 49/373 (13%), Positives = 109/373 (29%), Gaps = 47/373 (12%) Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 I + + + L + + + ++ +GA TGR S QN+ Sbjct: 804 IINNVKLYRESKKLFQNYIENLPKFIQKETNKIHCNFNQVGA-STGRLSCEHPNLQNIHS 862 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC------VIASEGKKLVVADLAGIE 385 R L + + + +C S+G+ L+ D +E Sbjct: 863 RFRCAISLKGEDSSSVEVGKDKLTVAEDPDREILTCEMSPHESTPSDGENLITFDYKQME 922 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 V+A+++ ++ LK ++G+ T QVT + R + K + + Y Sbjct: 923 LFVMAYLSFDRQLLKMLQSGDVFVETAKVLFNTT---QVTSELRRMTKTVIYGILYGQTE 979 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 L ++ ++ + + + F + +G +R Sbjct: 980 NGL-----ARSLLISEGMASNLISNFFQVFPNVYRFMEMQKILLKHMNRVYTLVGR--KR 1032 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + + V ++ T G A K + + + ++ G Sbjct: 1033 IIE------PTVKN----KYRISMNTPIQGCAADIMKFALLSCLSIMTHGRGRQVVSNFG 1082 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGY 622 S+ + + T+ ++ K Sbjct: 1083 -SVHEPHNKYDVHSMGHWTQSARLLEINNVSA---------------ALLEENKPFLEAT 1126 Query: 623 DIVLTVHDEIVCE 635 ++L VHDE++ E Sbjct: 1127 KLILQVHDELLFE 1139 >gi|32442287|gb|AAP82214.1| DNA polymerase [Podovirus SOG] Length = 400 Score = 96.7 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 56/464 (12%), Positives = 120/464 (25%), Gaps = 123/464 (26%) Query: 95 CTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 TLVL+R KL K+ + ++ Sbjct: 1 DTLVLSRLFNPNREGGHSXXXRGYKLGYHKI----------------------DFSDYLN 38 Query: 153 AWRLFGEYCKGDVTVTREIFKR--------LEPLSSKEQELWYLDQTINDRGYCVDVALA 204 + +YC DV + + K+ + + EQ + + + G+ D+ A Sbjct: 39 YSKEMLDYCVRDVQLNAVVLKKLREESRGFSKQCIAIEQGVARIMKQQEVNGFKFDLQSA 98 Query: 205 HTLNQIVDVERTKLDQELESLTYGLV---------------------------------- 230 L + ++ ++ E+ + Sbjct: 99 LLLLAKLREKKQSIEDEVHNTFKPKWVDDKLVKPYIKKDGDLSKRGLTDDEYQRCLDTNN 158 Query: 231 -----------SSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQV 276 + +++ +L ++ LS+ + ++ Sbjct: 159 FEPFMRQTLQDFNLGSRKQIGEYLIDFGWKPERFTPTGQPIVDEKTLSAITHIHE--AKL 216 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + + + + ++++ VE + DGR+ G + GA TGR + +P Sbjct: 217 IADFLLLQK-RIAQVDSWVEGVQEDGRVHGFVIPNGA-ITGRMTHRNPNVAQVP------ 268 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 R+C EG L+ D +G+E R+LA ++ Sbjct: 269 ------------------AVYSPYGKECRACWTVEEGNVLIGVDASGLEIRMLAHYMNDE 310 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + R K AL Y G + S G Sbjct: 311 EYTN---------EILNGDIHTANQKLAKLESRDKAKTFIYALMYGAGDEKL---GSVVG 358 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 + + + + R + + +G Sbjct: 359 GSTSDGKR---ARQYFFDNKPTFKSLRDRVQRASALDYVEHLVG 399 >gi|32442295|gb|AAP82218.1| DNA polymerase [Podovirus SOG] Length = 410 Score = 96.7 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 66/424 (15%), Positives = 114/424 (26%), Gaps = 127/424 (29%) Query: 95 CTLVLARSNGLP----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 TLVL+ +L G L + Sbjct: 1 DTLVLSSLACPSRAGGHSLDNWGSILGFPK--------------------GDHTDWSTYS 40 Query: 151 REAWRLFGEYCKGDVTVTR--------EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 E EYCK DV + E+ E E ++ ++ Q D G+ +D Sbjct: 41 PE----MREYCKRDVGLLEKVVLALDEELKGFSEKSIQLEHQVAWIIQEQMDNGWLLDQE 96 Query: 203 LAHTLNQIVDVERTKLDQELESLTY----------------------------------- 227 L + ++ +L+ E+ + Sbjct: 97 AVFMLLAELKEKKMELEDEVHKVFGPIAKPVRRIVPKIKKDGCMSSVGLKYYGERWSDEI 156 Query: 228 --------GLVSSSRCLEKLKTWLFLETGLHLEDLTETT---------CQRVLSSNKKLT 270 + +++ L G T T V+ ++ K Sbjct: 157 CGEHTRLEWQEFNIGSRQQIAERLMSA-GWKPTKFTPKTPKGGGGNPIVDDVVLADVKGI 215 Query: 271 PQAIQVFNN----RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 P+A + + R + + ++A+ DGR+ G + GA TGR + Sbjct: 216 PEATLMADYLTVVRR------IAMAQSWLDAVEDDGRVHGEVNSNGA-VTGRMTHYSPNL 268 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 + S+ I +RSC +G KLV D G+E Sbjct: 269 GQVTSGSK------------------------IYGPEMRSCWTVPQGHKLVGMDADGLEL 304 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA + + G+ T + A ++D K A Y G Sbjct: 305 RMLAHYMNDPEYTRMVAEGDKDAGTDAHTANQRAAGLNSRDD---AKTFIYAFLYGAGDA 361 Query: 447 AFQK 450 Sbjct: 362 KIGT 365 >gi|32442303|gb|AAP82222.1| DNA polymerase [Podovirus SOG] Length = 409 Score = 96.7 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 59/447 (13%), Positives = 119/447 (26%), Gaps = 95/447 (21%) Query: 95 CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH---- 150 TLVL+R + + + + + LI L N + Sbjct: 1 DTLVLSRLVWSDLKVND----FRYIEKNPDFPRNLI--GSHSLKAWGLRLSNLKDDYDGG 54 Query: 151 -REAWRLFGEYCKGDVTVTREIFKRLE------PLSSKEQELWYLDQTINDRGYCVDVAL 203 + +YC+ D ++K++ E E + + G+ D Sbjct: 55 WDTWSKDMQDYCEQDCQANWTLYKKIMSKRPSADSVRLEHEFAAVIRKQERIGFNFDTNK 114 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLV-----------------------------SSSR 234 A+ L + + +L+ +L++ + Sbjct: 115 ANQLLAKLQGRQAELEAKLQTAFPPWEIKTPFTPKVNNKSRGYVKGVLTYKVKEIVFNPA 174 Query: 235 CLEKLKTWLFL----ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR---SA 287 + + L + L + + VL + P+A + N + ++ Sbjct: 175 SRDHIADRLQKLRCWKPELMTDQGKPKVDEAVLKTL--DYPEAS-ILNEDLLINKRIGIL 231 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 +N ++ + G++ G + GA+ TGR + P Sbjct: 232 ATGVNGWLKMV-KGGKIHGRVNTNGAA-TGRCTHSKPNVAQTPS---------------- 273 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA-GEQWKLKAFETGE 406 R A EG LV ADL+G+E R LA A Sbjct: 274 --------VGAAYGRECRELFHAPEGYSLVGADLSGLELRCLAHYMARFDSGSYADVVVN 325 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 T +S + R K Y G + ++ + Sbjct: 326 GDIHTLNQKSAGLP-------TRNNAKTFIYGFLYGAGPAKIGSI-----VDGSEKEGRK 373 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHA 493 + + + + E ++ Sbjct: 374 LISKFMKATPAIKLLRTAVSEVVKKNG 400 >gi|114592896|ref|XP_001147297.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] Length = 311 Score = 96.3 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 54/350 (15%), Positives = 111/350 (31%), Gaps = 78/350 (22%) Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 L + + V+ + ++ +L+QE + +L+ Sbjct: 19 LPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAG-ERFLIMSNNQLREI 77 Query: 243 LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 LF + L + + R R+ + K + EA+N G Sbjct: 78 LFGKLKL-------------------------HLLSQRNSLPRTGLQKYPSTSEAVNIQG 112 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 + +Q P+ + E+ I+ Sbjct: 113 ISKHPIQITT-----------------PKNFKGKEDKILTISP----------------- 138 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE--TGEDLYVTTYARSFNVA 420 R+ ++S+G + AD + IE R+LA ++G+ LK F+ +D++ T ++ +V Sbjct: 139 --RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVP 196 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 QVT R K + A+ Y G + L + S ++++ ++ Sbjct: 197 VEQVTHADREQTKKVVYAVVYGAGKERLAAC-----LGVPVQEAAQFLESFLQKYKKIKD 251 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 F R + +G R+ R+ +L E+ Sbjct: 252 FARAAIAQCHQTGCVVSIMGR---------RRPLPRIHAHDQQLRAQAER 292 >gi|18104418|gb|AAL59543.1| DNA polymerase I [Escherichia coli] Length = 114 Score = 96.3 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 5/119 (4%) Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 IA E +V AD + IE R++A ++ ++ L AF G+D++ T A F + VT + Sbjct: 1 FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 QR K + L Y A LN+ + E + + + Sbjct: 61 QRRSAKAINFGLIYGMSA-----FGLARQLNIPRKEAQKYMDLYFERYPGVLQYMERTR 114 >gi|18104300|gb|AAL59484.1| DNA polymerase I [Escherichia coli] gi|18104302|gb|AAL59485.1| DNA polymerase I [Escherichia coli] gi|18104304|gb|AAL59486.1| DNA polymerase I [Escherichia coli] gi|18104306|gb|AAL59487.1| DNA polymerase I [Escherichia coli] gi|18104308|gb|AAL59488.1| DNA polymerase I [Escherichia coli] gi|18104310|gb|AAL59489.1| DNA polymerase I [Escherichia coli] gi|18104312|gb|AAL59490.1| DNA polymerase I [Escherichia coli] gi|18104314|gb|AAL59491.1| DNA polymerase I [Escherichia coli] gi|18104316|gb|AAL59492.1| DNA polymerase I [Escherichia coli] gi|18104318|gb|AAL59493.1| DNA polymerase I [Escherichia coli] gi|18104320|gb|AAL59494.1| DNA polymerase I [Escherichia coli] gi|18104322|gb|AAL59495.1| DNA polymerase I [Escherichia coli] gi|18104324|gb|AAL59496.1| DNA polymerase I [Escherichia coli] gi|18104326|gb|AAL59497.1| DNA polymerase I [Escherichia coli] gi|18104328|gb|AAL59498.1| DNA polymerase I [Escherichia coli] gi|18104330|gb|AAL59499.1| DNA polymerase I [Escherichia coli] gi|18104332|gb|AAL59500.1| DNA polymerase I [Escherichia coli] gi|18104334|gb|AAL59501.1| DNA polymerase I [Escherichia coli] gi|18104338|gb|AAL59503.1| DNA polymerase I [Escherichia coli] gi|18104340|gb|AAL59504.1| DNA polymerase I [Escherichia coli] gi|18104342|gb|AAL59505.1| DNA polymerase I [Escherichia coli] gi|18104344|gb|AAL59506.1| DNA polymerase I [Escherichia coli] gi|18104346|gb|AAL59507.1| DNA polymerase I [Escherichia coli] gi|18104348|gb|AAL59508.1| DNA polymerase I [Escherichia coli] gi|18104350|gb|AAL59509.1| DNA polymerase I [Escherichia coli] gi|18104352|gb|AAL59510.1| DNA polymerase I [Escherichia coli] gi|18104354|gb|AAL59511.1| DNA polymerase I [Escherichia coli] gi|18104356|gb|AAL59512.1| DNA polymerase I [Escherichia coli] gi|18104358|gb|AAL59513.1| DNA polymerase I [Escherichia coli] gi|18104360|gb|AAL59514.1| DNA polymerase I [Escherichia coli] gi|18104362|gb|AAL59515.1| DNA polymerase I [Escherichia coli] gi|18104364|gb|AAL59516.1| DNA polymerase I [Escherichia coli] gi|18104366|gb|AAL59517.1| DNA polymerase I [Escherichia coli] gi|18104368|gb|AAL59518.1| DNA polymerase I [Escherichia coli] gi|18104370|gb|AAL59519.1| DNA polymerase I [Escherichia coli] gi|18104372|gb|AAL59520.1| DNA polymerase I [Escherichia coli] gi|18104374|gb|AAL59521.1| DNA polymerase I [Escherichia coli] gi|18104376|gb|AAL59522.1| DNA polymerase I [Escherichia coli] gi|18104378|gb|AAL59523.1| DNA polymerase I [Escherichia coli] gi|18104380|gb|AAL59524.1| DNA polymerase I [Escherichia coli] gi|18104382|gb|AAL59525.1| DNA polymerase I [Escherichia coli] gi|18104384|gb|AAL59526.1| DNA polymerase I [Escherichia coli] gi|18104386|gb|AAL59527.1| DNA polymerase I [Escherichia coli] gi|18104388|gb|AAL59528.1| DNA polymerase I [Escherichia coli] gi|18104390|gb|AAL59529.1| DNA polymerase I [Escherichia coli] gi|18104392|gb|AAL59530.1| DNA polymerase I [Escherichia coli] gi|18104394|gb|AAL59531.1| DNA polymerase I [Escherichia coli] gi|18104396|gb|AAL59532.1| DNA polymerase I [Escherichia coli] gi|18104398|gb|AAL59533.1| DNA polymerase I [Escherichia coli] gi|18104400|gb|AAL59534.1| DNA polymerase I [Escherichia coli] gi|18104402|gb|AAL59535.1| DNA polymerase I [Escherichia coli] gi|18104404|gb|AAL59536.1| DNA polymerase I [Escherichia coli] gi|18104406|gb|AAL59537.1| DNA polymerase I [Escherichia coli] gi|18104408|gb|AAL59538.1| DNA polymerase I [Escherichia coli] gi|18104410|gb|AAL59539.1| DNA polymerase I [Escherichia coli] gi|18104412|gb|AAL59540.1| DNA polymerase I [Escherichia coli] gi|18104414|gb|AAL59541.1| DNA polymerase I [Escherichia coli] gi|18104416|gb|AAL59542.1| DNA polymerase I [Escherichia coli] gi|18104420|gb|AAL59544.1| DNA polymerase I [Escherichia coli] gi|18104422|gb|AAL59545.1| DNA polymerase I [Escherichia coli] gi|18104424|gb|AAL59546.1| DNA polymerase I [Escherichia coli] gi|18104430|gb|AAL59549.1| DNA polymerase I [Escherichia coli] gi|18104432|gb|AAL59550.1| DNA polymerase I [Escherichia coli] gi|18104434|gb|AAL59551.1| DNA polymerase I [Escherichia coli] gi|18104436|gb|AAL59552.1| DNA polymerase I [Escherichia coli] gi|18104438|gb|AAL59553.1| DNA polymerase I [Escherichia coli] gi|18104440|gb|AAL59554.1| DNA polymerase I [Escherichia coli] gi|18104442|gb|AAL59555.1| DNA polymerase I [Escherichia coli] Length = 114 Score = 96.0 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 5/119 (4%) Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 IA E +V AD + IE R++A ++ ++ L AF G+D++ T A F + VT + Sbjct: 1 FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 QR K + L Y A LN+ + E + + + Sbjct: 61 QRRSAKAINFGLIYGMSA-----FGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTR 114 >gi|197935871|ref|YP_002213707.1| DNA polymerase [Ralstonia phage RSB1] gi|197927034|dbj|BAG70376.1| DNA polymerase [Ralstonia phage RSB1] Length = 815 Score = 96.0 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 60/587 (10%), Positives = 145/587 (24%), Gaps = 106/587 (18%) Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE--YCKGDVTVTRE 170 E + +RF K + + GE Y + D T Sbjct: 256 AELAGFIPADLPFDFNWNSRFHKSALIFGGKVKYEARTAIVDEETGEQVYAQKDAT---- 311 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 L ++ + + + + + K + + + + + Sbjct: 312 -HVLLVDGTTMDLDAYLALVVEKTAPEAI----------RFAGGKNKGEIKTKKVKVNDL 360 Query: 231 SSSRCLEKLKTWLFLETGLHLED------LTETTCQRVLSSN-KKLTPQAIQVFNNRMRA 283 + + + F + V+ + + ++V + Sbjct: 361 DKPKSRMEDHFYTFPGFTKPDPSWEGATPGVYSCDSDVMEALTARQDVPFVKVLTGVVAL 420 Query: 284 SRSAVLKL----------NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ ++ ++ + + TL + T R S QN+P+ Sbjct: 421 TKDLGTYFITHDEKTGHDKGMLTLVHPNDIVHHTLNMCR-TVTARLSSSDPNLQNIPKGQ 479 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +S + K++ +D + +E V A + Sbjct: 480 KSEAKTMFESRFGADG-------------------------KIIQSDFSSLEVYVQAMLT 514 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + + G D++ A +V + Sbjct: 515 LCKQLIADLAAGIDMHCMRLAAKEKREYDEVLM------------------------LCK 550 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + ++ + +F R A + + A + Sbjct: 551 KGKVGVDLTQEERDEWDYKRTGAKSFSFQRAYGAGVAAIAAGTGIPLEEVQALADAEDAR 610 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + E + + I + + +K + P G+ YR+ Sbjct: 611 YPEIGEYF----EMKADEIRETRTPTLDIVEHPEIKGLKCQLGKGYSVTPDGKRYSYRES 666 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM-MNAT--------KAGYDI 624 + + + + T ++ VQ +++ M + K + Sbjct: 667 PSPKYMIERGRPRTGFVPT---QIKNYEVQGTGGEVMKAAMWLAVRAFYYYKNFKGLALL 723 Query: 625 VLTVHDEIVCETPDT-DEFNASMLYHLMTSN---PSWAK--GLPLKA 665 V TVHD + T A +L+ M W LP+ Sbjct: 724 VNTVHDAQYVDAHKTVAVKAAGLLHACMVEASTLIEWWFKWELPIGV 770 Score = 70.9 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 71/285 (24%), Gaps = 43/285 (15%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--------LWDCVHDPV 52 M D ET + + + ++ + D VE Sbjct: 1 MKYTVFDLETTTHAAYKHK-ANPFIPENHIVAVGWRHGDTDVEARLADRADYLYAAPGCS 59 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTV------------LKACFNLDIPIHRWICTLVLA 100 P L +V HN F+ L+A + + T ++ Sbjct: 60 QPSSWFTDLLKHGKWVVGHNIKFDLLYALANENSYPEQNLEAWMDWVVKGGLPWDTQIVE 119 Query: 101 RSNG--LPSA----LKAVGEALKLSSQKMEEGKEL----IARFCKGET--HECLYDRNKP 148 PS+ L V + K++E K + I + + L R P Sbjct: 120 YLLRGMEPSSTMLPLDEVAVHYG-GNTKVDEVKAMWEAGIDTWDIPRELLIDYLVGRTVP 178 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYCVDVA 202 + F G+ + + + + G V+ A Sbjct: 179 SEDGEGEDFELGDIGNTELVFRAQLKRAKEQGQLRSIILNMGAYVATIEMERNGMHVNKA 238 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLV---SSSRCLEKLKTWLF 244 L + + + ++ EL + + +F Sbjct: 239 KGLKLAEKMAAKLIEMSAELAGFIPADLPFDFNWNSRFHKSALIF 283 >gi|70953922|ref|XP_746033.1| POM1 [Plasmodium chabaudi chabaudi] gi|56526532|emb|CAH77590.1| POM1, putative [Plasmodium chabaudi chabaudi] Length = 1429 Score = 96.0 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 66/203 (32%), Gaps = 29/203 (14%) Query: 11 RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLKEALENTDVTI 68 +D+ G+ + E + L +++PV ++D + + + L++ L + ++ Sbjct: 1244 YCGLDMETTGLEVFGE--KIRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIVK 1301 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 + N F+ L + I T + ++ + + E K Sbjct: 1302 IIQNGKFDTKFLLYN---NFNITNIFDTYIASKLLDKNKNM------YGFKLNNIVE-KY 1351 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--------- 179 L K + + + N++ Y D + +++K+L Sbjct: 1352 LSVYLDKQQQNSVWNNSLLNNNQ------LFYAARDSSCLLKLYKKLSEQIVAENMQIVN 1405 Query: 180 SKEQELWYLDQTINDRGYCVDVA 202 E + + G VD+ Sbjct: 1406 DIENKCILPICDMELNGITVDLE 1428 >gi|18104336|gb|AAL59502.1| DNA polymerase I [Escherichia coli] Length = 114 Score = 96.0 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 5/119 (4%) Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 IA E +V AD + IE R++A ++ ++ L AF G+D++ T A F + VT + Sbjct: 1 FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 QR K + L Y A LN+ + E + + + Sbjct: 61 QRRSAKAINFGLIYGMSA-----FGLARQLNIPRKEAQKYMDLYFERYPGVPEYMERTR 114 >gi|256824902|ref|YP_003148862.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains [Kytococcus sedentarius DSM 20547] gi|256688295|gb|ACV06097.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains [Kytococcus sedentarius DSM 20547] Length = 587 Score = 95.6 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 70/501 (13%), Positives = 113/501 (22%), Gaps = 114/501 (22%) Query: 187 YLDQTINDRGYCVDVALAHTLNQIVD----------VERTKLDQELESLTYGLVSSSRCL 236 + Q +N G D ++ H L + + Sbjct: 181 LIAQELNHAGVPFDASVHHAQLTTALGEADRHGGRPARMAALVARIRETLDAPGLNPDSA 240 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 L L GL + + + L I+ +R + + Sbjct: 241 PTLVAAL-RRAGLEVTSTRKW-------ELRGLDHPVIEPLLEYKALARLYTANGWSWMR 292 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 DGR R G TGRW+ LP Sbjct: 293 HWVRDGRFRPD-WVAGGVVTGRWASRGGGALQLP-------------------------- 325 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +RS V A G +LVVAD A +E RVLA M+ + +A G+ Sbjct: 326 -----QQIRSAVRAEPGWRLVVADAAQLEPRVLAAMSQDGAMARAAAAGDLYQGL----- 375 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 + D RA KV L Y + + Sbjct: 376 ----VDEGVVDTRAHAKVAMLGAMYGATSG----------------EAGALMARLRRAYP 415 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 A + ++G WR+ + + + A E+ + Sbjct: 416 RAMGWVDAAAAAGERGERVSTWLGRTSPAPPAFWREA--QAAAQHPDASPAAERRAHS-- 471 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 A R V + + R D+ + + Sbjct: 472 AAREWGRFTRNFVVQGTAAEWALCWMGFLRR-GLDDLHGP-GGMREGDGGPGGLTASRPE 529 Query: 597 LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPS 656 L + HDE++ P+ + Sbjct: 530 LVYFL---------------------------HDEVIVHAPEEFADEVAECVREAARRAG 562 Query: 657 WAK------GLPLKAEGYESK 671 PL ES Sbjct: 563 VLLFPGSPVDFPLSVAVVESY 583 >gi|71416914|ref|XP_810416.1| mitochondrial DNA polymerase I protein C [Trypanosoma cruzi strain CL Brener] gi|70874942|gb|EAN88565.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma cruzi] Length = 1627 Score = 95.2 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 53/421 (12%), Positives = 112/421 (26%), Gaps = 98/421 (23%) Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRP 332 + R + + + L A+ + + R + + TGR S QN+PR Sbjct: 1277 KALQQLRFTEKKMQLFEEGALFRAVLPECKDRVHGELCHTVTATGRLSSQSPNLQNIPR- 1335 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK---LVVADLAGIEARVL 389 + +R +++ G++ ++ AD + +E VL Sbjct: 1336 ----------------------------EEDLRRLIVSRFGRREGRMIEADYSQLEVVVL 1367 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++ + L+ D + + Sbjct: 1368 AALSRDTRMLQELHDKVDFHCLRVSLMTKEPYEN-------------------------- 1401 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 + + +F R A ER+ A Sbjct: 1402 -------VVRKAKQERDPHYIQLRQQAKTFSFQRQYGAGIATIATTTGLTEHEVERLISA 1454 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 Q + +S + + +E G + R R + + ++L P L Sbjct: 1455 EEQHYKDLSRYY----RLVMDCVEAGADRLLRLRTLDAATWSPAMRRMILLTEP----LH 1506 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---------TKA 620 Y V + ++ +L VQ ++ +I+ Sbjct: 1507 YFVVPTGSKFDFAKDKKSI------PRLKNYPVQGLAGEIVQIMCGKIVRRFYEKRNYDG 1560 Query: 621 GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSN--------PSWAKGLPLKAEGYESK 671 +V TVHD + + + + +M+S P +P A+ + Sbjct: 1561 RAFLVNTVHDCVWIDAHSSVADEVMHDVSEIMSSTSKVMSSLWPDVKLDVPFNADVHIGP 1620 Query: 672 R 672 Sbjct: 1621 S 1621 >gi|71414776|ref|XP_809478.1| mitochondrial DNA polymerase I protein C [Trypanosoma cruzi strain CL Brener] gi|70873866|gb|EAN87627.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma cruzi] Length = 1499 Score = 95.2 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 53/421 (12%), Positives = 112/421 (26%), Gaps = 98/421 (23%) Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRP 332 + R + + + L A+ + + R + + TGR S QN+PR Sbjct: 1149 KALQQLRFTEKKMQLFEEGALFRAVLPECKDRVHGELCHTVTATGRLSSQSPNLQNIPR- 1207 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK---LVVADLAGIEARVL 389 + +R +++ G++ ++ AD + +E VL Sbjct: 1208 ----------------------------EEDLRRLIVSRFGRREGRMIEADYSQLEVVVL 1239 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++ + L+ D + + Sbjct: 1240 AALSRDTRMLQELHDKVDFHCLRVSLMTKEPYEN-------------------------- 1273 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 + + +F R A ER+ A Sbjct: 1274 -------VVRKAKQERDPHYIQLRQQAKTFSFQRQYGAGIATIATTTGLTEHEVERLISA 1326 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 Q + +S + + +E G + R R + + ++L P L Sbjct: 1327 EEQHYKDLSRYY----RLVMDCVEAGADRLLRLRTLDAATWSPAMRRMILLTEP----LH 1378 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---------TKA 620 Y V + ++ +L VQ ++ +I+ Sbjct: 1379 YFVVPTGSKFDFAKDKKSI------PRLKNYPVQGLAGEIVQIMCGKIVRRFYEKRNYDG 1432 Query: 621 GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSN--------PSWAKGLPLKAEGYESK 671 +V TVHD + + + + +M+S P +P A+ + Sbjct: 1433 RAFLVNTVHDCVWIDAHSSVADEVMHDVSEIMSSTSKVMSSLWPDVKLDVPFNADVHIGP 1492 Query: 672 R 672 Sbjct: 1493 S 1493 >gi|157168417|ref|YP_001456774.1| gp44, DNA polymerase I [Corynebacterium phage BFK20] gi|74268849|emb|CAJ29727.1| gp44, DNA polymerase I [Corynebacterium phage BFK20] Length = 634 Score = 94.8 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 72/538 (13%), Positives = 130/538 (24%), Gaps = 105/538 (19%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKE 59 T+ +D E G+ + + Sbjct: 62 TVAVDIE--------AAGLAH--ASFDMRCITLSWYTGTGSEAMTVLIDPRDPHEASFAR 111 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIP-IHRWICTLVLARSNGL----PSALKAVGE 114 + T +V HN ++ L + + I + T+VLAR L+++ Sbjct: 112 RILTTAPALVFHNGAYDVPPLVQHGVMTLDHIVKVWDTIVLARMAYPDKDTSKGLESLAG 171 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE---- 170 G + G + + + D +T Sbjct: 172 RSDTLGMPPSPGSIKNSYLLAGYKKSDGFM----HADIDMLPYRIGAMSDTPITLRMLDK 227 Query: 171 IFKRLEPLS--------------SKEQELWYLDQTINDR-------GYCVDVALAHTLNQ 209 ++ L +Q N G VD HT ++ Sbjct: 228 LYNNCVQWLTSSTFEGETVPRTAQDAHRLIEREQITNRAMLRRSAIGLRVDREYLHTYSE 287 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLS 264 ER +E + + +L + + ++ Sbjct: 288 QTLAEREHAANLIEKTIARE--AVGNGLHVVNYLDTQGLIPASWPRTPTGRLKADKQAFE 345 Query: 265 SNKKLTPQAIQVFNNRMRASRSAV-LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 S P +R A + L GR+ + LGAS TGR + Sbjct: 346 SL--DHPLID---AHRKVADTDHILDYLGKTDAMAQITGRVHPQVGILGASATGRMAYSQ 400 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 Q P +R D+ EG V D + Sbjct: 401 PELQQFPSEARKIILWDK-----------------------------PEGA--VSIDWSS 429 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 +E ++A A + L F +R KV+ LA Y Sbjct: 430 VEPVIMANCARDTEFLAGFNHHGADLYAPIT---------SQGIERKTAKVVMLAAMYGQ 480 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 G+++ + L ++ E + F + +Q +H G Sbjct: 481 GSRSLAE-----RLGVSVDEAKSLRKKVFEPMPRTDAFMKAIQATSEQHGRIMTADGR 533 >gi|32442291|gb|AAP82216.1| DNA polymerase [Podovirus SOG] Length = 401 Score = 94.8 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 52/396 (13%), Positives = 105/396 (26%), Gaps = 80/396 (20%) Query: 95 CTLVLARSNGL----PSALKAVGEALKLSSQKMEEGKE-----LIARFCKGETHE----- 140 TL+L+R +LK G + + Q+ + ++ C Sbjct: 1 DTLILSRLFRPIRESGHSLKTWGYRVGFAKQEQPLDFDEYTPQMLEYCCNDVRLNELVYL 60 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVT------------VTREIFKRLEPLSSKEQELWY- 187 L ++ L K T + K + + E+ Sbjct: 61 SLLKEQAGFSPQSIALEHAVAKIISDQENNGFAFNEKQATMLLAKLKDKMYEVTDEVQRT 120 Query: 188 -----LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL--VSSSRCLEKLK 240 +D + + D L+ + + + ++ + + +++ Sbjct: 121 FKPRMVDVKLVVPKFKKDGELSKSGLTTEEYDTCMTQKKYQPFMRQELQEFNLGSRKQIG 180 Query: 241 TWLFLETGLH---LEDLTETTCQRVLSSNKKLT---PQAIQVFNNRMRASRSAVLKLNTL 294 +L + L + P A + + A + + Sbjct: 181 EYLMDFGWEPKRFTPTGQPIVDEGTLKKITHIHEAKPIADFLLYQKRIAQ------IQSW 234 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G++ G + TGR S +P Sbjct: 235 LDALEEDGRVHGSVIPNG-TITGRMSHNHPNVAQVP------------------------ 269 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 R+C EG LV D +G+E R+LA ++ + Sbjct: 270 AVYSPFGVECRACWTVEEGNVLVGVDASGLELRMLAHYMNDEEYIN---------EVVNG 320 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 + R K AL Y G + Sbjct: 321 DIHTTNQKLAGLESRDTAKTFIYALVYGAGDEKIGS 356 >gi|58257968|gb|AAW69379.1| DNA polymerase I [Hydrogenobacter hydrogenophilus] Length = 169 Score = 94.4 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 2/164 (1%) Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 LQ I +RS A EGK LV++D + IE R+ + G++ ++AF+ G DL+ T Sbjct: 1 DPNLQNIPRELRSVFKAREGKILVISDFSQIELRIASEYVGDEKMIRAFKEGRDLHRYTA 60 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + +V+K++R + K + L Y AK + A + G++L+ + E Sbjct: 61 SILLGKREEEVSKEERQLAKAVNFGLIYGISAKGLSEYAKSYGIDLSVDEAQKIRDKFFE 120 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK--HS 515 + +N+ ++ E + + V + + Sbjct: 121 YFVSFKNWHEKVKRELKEFKESRGYTLLGRKYVAHTFPDAVNYP 164 >gi|154412700|ref|XP_001579382.1| DNA polymerase I family protein [Trichomonas vaginalis G3] gi|121913588|gb|EAY18396.1| DNA polymerase I family protein [Trichomonas vaginalis G3] Length = 709 Score = 94.0 bits (232), Expect = 6e-17, Method: Composition-based stats. Identities = 45/309 (14%), Positives = 93/309 (30%), Gaps = 56/309 (18%) Query: 166 TVTREIFKRL--EPLSSKEQELWYLDQTIND-----RGYCVDVALAHTLNQIVDVERTKL 218 T E+F++ + K + + + + +D+ ++ E ++ Sbjct: 286 DKTLELFEKFTKDDKLYKWYKDIEMRHLRFMGTIHQKSFKLDLENMKFERYKIESELKEI 345 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL---TE---------------TTCQ 260 ++ L+ + ++ LF + L T+ T Sbjct: 346 SDKIYGLSGCK-FNILSPFEVSEVLFEKMKLKSNKFSAQTKTIDSRHKNIKHREFAPTNS 404 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL P + R S+ L + + +S+G L + L ++ TGR S Sbjct: 405 LVLDDI--NHPIVELIKKFR-SLSKLVSNWL-SFDQKSDSEGILHPWILVL-STATGRIS 459 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380 QN+P S +R + K ++ D Sbjct: 460 SVFPNLQNIP------------------------SFNDEQSLNIRKFFLPPTKKTMISVD 495 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + +E R+LA ++ ++ + + A+ VT+D R K A Sbjct: 496 YSQLELRILAHLSDDKKLKDLCNVDQGDIHSMIAKMI-FNKNNVTEDMRKEAKTNIYATI 554 Query: 441 YQGGAKAFQ 449 Y + Sbjct: 555 YGKKVENMS 563 Score = 70.5 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 10/102 (9%) Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 I + R + + +N + SG+ ++ + + + R Sbjct: 570 IFQGIRSFITNTVIETQNKGFIKTFSGKYRFLPNIRCQKV---SDKMRDERIS------V 620 Query: 599 ENIVQAVSRDILAEGMMNATKA-GYDIVLTVHDEIVCETPDT 639 I+Q + D + ++N K ++ +HDE + ET + Sbjct: 621 NTIIQGTAADFVKFALINVIKQTNLIPIIQIHDEWIFETDEE 662 >gi|332142369|ref|YP_004428107.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552391|gb|AEA99109.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep ecotype'] Length = 310 Score = 94.0 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 74/363 (20%), Positives = 122/363 (33%), Gaps = 93/363 (25%) Query: 277 FNNRMRASRSA--VLKLNTLVEAMN----SDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 ++S V + LV+A+N +D +L L + GA QNL Sbjct: 11 IFEARERAKSNQAVSRAKKLVQAVNGRPNNDNKLVVPLVYYGAHTGRYGGNEGLNLQNLQ 70 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 R S R + A G+ + VAD + IEAR++A Sbjct: 71 RGSEH-----------------------------RKALTAPFGQLVYVADSSNIEARIVA 101 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD-QRAIGKVMELALGYQGGAKAFQ 449 W A E L F+ G D Y T + + T +R +GKV L L Y GA+ F Sbjct: 102 WFAQETALLNQFKNGIDTYATLATDIYGFPVTKQTHQLERNVGKVARLGLQYGMGARTFH 161 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 + + + + + E++ K Sbjct: 162 RTMESGPMGIPPMP----------------------------------WAFPEIEKIVKT 187 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 +R+ H + + W +Q ++ I R L LP+G L Sbjct: 188 YRRTHPMIKKCWEIGNQIIQKMIRKDTLETWRCLTVRHQC----------LELPNGMYLQ 237 Query: 570 YRDVGNNRSYLNTT-------------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 + ++ N +++L + YGGKL ENI QA++ + E M++ Sbjct: 238 FPNLRNKEIQTAQGPQYEVVYDSYDYKSKKLVEKRLYGGKLLENIAQALAGLAMKEMMLD 297 Query: 617 ATK 619 + Sbjct: 298 IQE 300 >gi|168037310|ref|XP_001771147.1| predicted protein [Physcomitrella patens subsp. patens] gi|162677527|gb|EDQ63996.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1042 Score = 94.0 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 77/302 (25%), Gaps = 69/302 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVE-LWD-CVHDPVMPQV 56 D E + ID+ + F+ F D D + +V Sbjct: 635 ACDTE-VTEIDVKNESP---VGHGRITCFSIYCGPTADFGDGKNRLWIDVLDGGEDVLKV 690 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGL-------PSA 108 K E+ + V HN F++ VL I + T+ LAR + Sbjct: 691 FKRYFESPSIKKVWHNYSFDKHVLGRH---GIHPQGFHADTIHLARLYDSARRGAKGGYS 747 Query: 109 LKAVGEALKLSSQKM--------------EEGKELIARFCKGETHECLYDRNKPN----- 149 L+ + K+ + + KEL + + + P Sbjct: 748 LEVLSADEKVMDGYIRHSTEVDESVLAGKKSMKELFGKANLKKDGTPGKIKTIPPVHELQ 807 Query: 150 -HREAWRLFGEYCKGDVTVTREIFKRLEPLS---------------------SKEQELWY 187 E + Y D T +F L+ + Sbjct: 808 RDEELRDAWIYYSTFDAVCTWRLFLSLQQKLSSTPWNVADLKKKGSMYDFYEKYWRPFGE 867 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV-----SSSRCLEKLKTW 242 + + G VD T+ ++ ++ + +++ + Sbjct: 868 VLVQMEADGMLVDCNHLATVEKVAKAQQEISVSRFRKWAAKYCADAAQMNVGSDAQIRQF 927 Query: 243 LF 244 L+ Sbjct: 928 LY 929 >gi|218296583|ref|ZP_03497311.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23] gi|218243125|gb|EED09657.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23] Length = 536 Score = 94.0 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 63/211 (29%), Gaps = 35/211 (16%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134 + +VL L +P ++LA + + V Sbjct: 355 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYGGE------------WTE 400 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194 + L +R W + E+ L + + Sbjct: 401 EAGERAALSERLF---ANLWERL--------EGEERLLWLYR---EVERPLSAVLAHMEA 446 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250 G +DVA L+ V E +L+ E+ L + ++L+ LF E GL Sbjct: 447 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 505 Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNR 280 E + +T VL + ++ P ++ R Sbjct: 506 TEKTGKRSTSAAVLEALREAHPIVEKILQYR 536 >gi|297192970|ref|ZP_06910368.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486] gi|297151581|gb|EFH31247.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486] Length = 406 Score = 94.0 bits (232), Expect = 8e-17, Method: Composition-based stats. Identities = 63/410 (15%), Positives = 106/410 (25%), Gaps = 117/410 (28%) Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 F + G+ + + + P + + R + ++ DGR Sbjct: 78 FAQAGIKVRSTRRWELEEI------DHPAVKPLIEY-KKLYRIWTAHGWSWLQDWVRDGR 130 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 R G S +GRW+ +P+ Sbjct: 131 FRPGY-LPGGSVSGRWTTNGGGALQIPK-------------------------------V 158 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R V+A +G +LVVAD +E RVLA ++ + ++ DLY + R+F+ Sbjct: 159 IRRAVVADDGWRLVVADADQMEPRVLAAISRDPGLMEVAGHDGDLYTSLSDRAFSGDRD- 217 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 K+ L Y T+G L A L Sbjct: 218 -------HAKIALLGAIY----------GQTSGDGLKNLAAL------------------ 242 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R++ R + A + E R Sbjct: 243 ---------------------------RRRFPRAVAY---VDDAAKAGEEGRLVRTWLGR 272 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 D I P T T G +VQ Sbjct: 273 TSPRAAGAGDDDEAGIPQEPV--------EAAPADGEFTPGYASTNARARGRFTRNFVVQ 324 Query: 604 AVSRD--ILAEGMMNATKAGYD--IVLTVHDEIVCETPDTDEFNASMLYH 649 + D +L + AG +V HDE++ P + + + Sbjct: 325 GSAADWALLMLAALRQATAGMRAELVFFQHDEVIVHCPAEEARDVAEAIR 374 >gi|148747811|ref|YP_001285777.1| DNA polymerase [Phormidium phage Pf-WMP3] gi|146230044|gb|ABQ12452.1| DNA polymerase [Phormidium phage Pf-WMP3] Length = 363 Score = 93.6 bits (231), Expect = 9e-17, Method: Composition-based stats. Identities = 60/376 (15%), Positives = 108/376 (28%), Gaps = 77/376 (20%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM---PQVLKEA 60 + +D E DL+ +Y D V L F + + +++ Sbjct: 10 VVLDIE---SDDLS----AQYDVDTRVYLIGVQFLADYGLY---AAGDYVYGSLEEMRDL 59 Query: 61 L----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL----PSALKAV 112 +TDVT V HN+ F+ L + I R+ CT V A + ++L ++ Sbjct: 60 CVSLANDTDVTFVIHNASFDVPAL-RLRGIPIK--RYFCTQVAAHTWHPKSSEENSLDSL 116 Query: 113 -GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 G L L ++ +L + E ++ +F Y D+ T ++ Sbjct: 117 TGMKLDLRAELEVYRPDLKGKPKGYEYRLYDDKSHRGWSTVN-DIFHSYLVSDLQATGKL 175 Query: 172 FKRLEPL-----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + LE Q L G VDV + + R + Sbjct: 176 YTTLEDNFSSDERALRCLLDINQPYVELIIEFEQ-GSWVDVDRVDEVQSKLQTLRDEAWS 234 Query: 221 EL--------------------------ESLTYGLVSSSRCLEKLKTWLFLETGLHLED- 253 E+ + + +++ L G Sbjct: 235 EITTHIRYDVTEIKRYKNGYKKRNGVVTYDHCPLVDFNPGSSDQVAAALTYLYGWEPTKL 294 Query: 254 ----LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR-LRGTL 308 +T VL P + + ++ + + N DG LR + Sbjct: 295 SDKTGKPSTSSEVLEEL--NYPLVSSLVKY-QKMAKLM-QFIPQIQ--ANLDGNILRPSY 348 Query: 309 QFLGASRTGRWSGCVF 324 A+RT R S Sbjct: 349 NQS-ATRTTRLSSSKP 363 >gi|18104426|gb|AAL59547.1| DNA polymerase I [Escherichia coli] gi|18104428|gb|AAL59548.1| DNA polymerase I [Escherichia coli] Length = 114 Score = 93.6 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 5/119 (4%) Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 I E +V AD + IE R++A ++ ++ L AF G+D++ T A F + VT + Sbjct: 1 FIGPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 QR K + L Y A LN+ + E + + + Sbjct: 61 QRRSAKAINFGLIYGMSA-----FGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTR 114 >gi|322489694|emb|CBZ24954.1| mitochondrial DNA polymerase I protein C,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 1538 Score = 93.6 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 52/418 (12%), Positives = 115/418 (27%), Gaps = 97/418 (23%) Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRPSR 334 + R + + + L A+ + R + + TGR S QN+P+ Sbjct: 1191 LQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPK--- 1247 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWM 392 + +R +++ G + ++ AD + +E VLA + Sbjct: 1248 --------------------------EEDLRRLIVSRFGAQGMMIEADYSQLEVVVLAAL 1281 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ D + + V + Sbjct: 1282 CRDPRMMQELRDNVDFHCLRVSLMTKEPYEDVMR-------------------------- 1315 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + +F R + +R+ A Sbjct: 1316 -------KAKVEKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRLIVAEEH 1368 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + +S+ ++ + + +E G + R R ++ + ++L P + Y Sbjct: 1369 HYKELSKYYSLVTR----CVEAGADRLLRLRTLDTSLWNANIRRVVMLTEP----MYYFV 1420 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNA------TKAGYD 623 V + T R+ +L VQ ++ + I+ ++ Sbjct: 1421 VPTGSKFDFTRDRKSV------PRLKNYPVQGLAGEIVQIMCGAIVREFYRKRNYGEKAF 1474 Query: 624 IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--------PSWAKGLPLKAEGYESKR 672 +V TVHD + + + L +M P +P KAE + Sbjct: 1475 LVNTVHDCVWVDAHKCVADEVRADLARIMGHTQEAIAALWPDMKLDVPFKAEIHSGPS 1532 >gi|325964629|ref|YP_004242535.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains [Arthrobacter phenanthrenivorans Sphe3] gi|323470716|gb|ADX74401.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains [Arthrobacter phenanthrenivorans Sphe3] Length = 572 Score = 93.6 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 64/468 (13%), Positives = 114/468 (24%), Gaps = 144/468 (30%) Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 + L+QEL L + + L L G+ ++ + + P Sbjct: 220 AKLEVLNQELRRLLNSPTLNPDSPQDLMRALH-RNGIEVKTTRKW------ELRESSHPA 272 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + + SR + ++A + GR R +G +GRW+ +PR Sbjct: 273 IAPLLAY-KQLSRLHTANGWSWLDAWVAGGRFRPEY-VVGGVVSGRWASRGGGALQIPRN 330 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +R V A G KL+VAD + +E RVL + Sbjct: 331 -------------------------------IRGAVHADPGHKLIVADASQLEPRVLVAL 359 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 A + +A + RA KV L Y + Sbjct: 360 AQDSSMAEAARDQDLYAGIAAKGFGG---------DRAKAKVALLGAMYGATSG------ 404 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + A ++ +G + + W Q Sbjct: 405 ----------EAGRLMPQLARTYPRAVDYVEQAARAGESGGTVTTRLGRSSPPPSERWFQ 454 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ E +A + R Sbjct: 455 S-----------QRSA-SAEEQRRAESIARSRGRFTRNF--------------------- 481 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-----------NATKAG 621 +VQ + D A + + Sbjct: 482 ----------------------------VVQGSAADWAACWLAELRRRLRALRKDLH-LN 512 Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGL---PLKAE 666 ++VL +HDE++ P + + AK L P+ E Sbjct: 513 AELVLFLHDEVMVHAPVEAVDAC--ITAI-EDAARAAKELLFGPIPVE 557 >gi|322504483|emb|CAM37559.2| putative mitochondrial DNA polymerase I protein C [Leishmania braziliensis MHOM/BR/75/M2904] Length = 1628 Score = 93.3 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 50/418 (11%), Positives = 113/418 (27%), Gaps = 97/418 (23%) Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRPSR 334 + R + + + L A+ + R + + TGR S QN+P+ Sbjct: 1281 LQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPK--- 1337 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWM 392 + +R +++ G + ++ AD + +E VLA + Sbjct: 1338 --------------------------EEDLRRLIVSRFGAQGMMIEADYSQLEVVVLAAL 1371 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ D + + Sbjct: 1372 CRDPRMMQELRDNVDFHCLRVSLMTKEPYED----------------------------- 1402 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + + +F R + +R+ A Sbjct: 1403 ----VVRKAKVKKDPQYIQLRQQAKVFSFQRQYGAGISTISTTTGLTEQEVDRLIVAEEH 1458 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + +S+ ++ + + +E G + R R + + ++L P + Y Sbjct: 1459 HYKELSKYYSLVTR----CVEAGADRLLRLRTLDTSCWNTNIRRVVMLTEP----MYYFV 1510 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNA------TKAGYD 623 V + T R+ +L VQ ++ + I+ ++ Sbjct: 1511 VPTGSKFDFTRDRKSV------PRLKNYPVQGLAGEIVQIMCGAIVREFYQKRNYGEKAF 1564 Query: 624 IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--------PSWAKGLPLKAEGYESKR 672 +V TVHD + + + + L +M P +P K E + Sbjct: 1565 LVNTVHDCVWVDAHKSVADEVRADLARIMGHTQETIATLWPDMKLDVPFKVEIHSGSS 1622 >gi|154334253|ref|XP_001563378.1| mitochondrial DNA polymerase I protein C [Leishmania braziliensis MHOM/BR/75/M2904] Length = 1628 Score = 93.3 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 50/418 (11%), Positives = 113/418 (27%), Gaps = 97/418 (23%) Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRPSR 334 + R + + + L A+ + R + + TGR S QN+P+ Sbjct: 1281 LQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPK--- 1337 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWM 392 + +R +++ G + ++ AD + +E VLA + Sbjct: 1338 --------------------------EEDLRRLIVSRFGAQGMMIEADYSQLEVVVLAAL 1371 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ D + + Sbjct: 1372 CRDPRMMQELRDNVDFHCLRVSLMTKEPYED----------------------------- 1402 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + + +F R + +R+ A Sbjct: 1403 ----VVRKAKVKKDPQYIQLRQQAKVFSFQRQYGAGISTISTTTGLTEQEVDRLIVAEEH 1458 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + +S+ ++ + + +E G + R R + + ++L P + Y Sbjct: 1459 HYKELSKYYSLVTR----CVEAGADRLLRLRTLDTSCWNTNIRRVVMLTEP----MYYFV 1510 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNA------TKAGYD 623 V + T R+ +L VQ ++ + I+ ++ Sbjct: 1511 VPTGSKFDFTRDRKSV------PRLKNYPVQGLAGEIVQIMCGAIVREFYQKRNYGEKAF 1564 Query: 624 IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--------PSWAKGLPLKAEGYESKR 672 +V TVHD + + + + L +M P +P K E + Sbjct: 1565 LVNTVHDCVWVDAHKSVADEVRADLARIMGHTQETIATLWPDMKLDVPFKVEIHSGSS 1622 >gi|194383398|dbj|BAG64670.1| unnamed protein product [Homo sapiens] Length = 611 Score = 93.3 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 40/284 (14%), Positives = 80/284 (28%), Gaps = 47/284 (16%) Query: 67 TIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPS---ALKAVGEALK 117 ++ N+ F R VL F D + A + + + E Sbjct: 315 PVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEKY- 372 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 +K K R E + +T ++ +L+ Sbjct: 373 --CEKSITVKVNSTYGNSSRNIVNQNVR------ENLKTLYR-------LTMDLCSKLKD 417 Query: 178 LSSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + L + + V+ + ++ +L+QE + Sbjct: 418 YGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAG-ERF 476 Query: 232 SSRCLEKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 +L+ LF + L L + +T + VL++ + L P + R Sbjct: 477 LITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYR 536 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + ++ L+ A G + T G + TGR S Sbjct: 537 Q-VHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHP 577 >gi|322497680|emb|CBZ32756.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 1548 Score = 93.3 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 50/418 (11%), Positives = 113/418 (27%), Gaps = 97/418 (23%) Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRPSR 334 + R + + + L A+ + R + + TGR S QN+P+ Sbjct: 1201 LQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPK--- 1257 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWM 392 + +R +++ G + ++ AD + +E VLA + Sbjct: 1258 --------------------------EEDLRRLIVSRFGAQGMMIEADYSQLEVVVLAAL 1291 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ D + + Sbjct: 1292 CRDPRMMQELRDNVDFHCLRVSLMTKEPYED----------------------------- 1322 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + + +F R + +R+ A Sbjct: 1323 ----VVRKAKVEKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRLIVAEEH 1378 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + ++ + + +E G + R R ++ + ++L P + Y Sbjct: 1379 HYKELCKYYSLVTR----CVEAGADRLLRLRTLDTSLWNANIRRAVMLTEP----IYYFV 1430 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNA------TKAGYD 623 V + T R+ +L VQ ++ + I+ ++ Sbjct: 1431 VPTGSKFDFTRDRKSV------PRLKNYPVQGLAGEIVQIMCGAIVREFYRKRNYGEKAF 1484 Query: 624 IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--------PSWAKGLPLKAEGYESKR 672 +V TVHD + + + L +M P +P KAE + Sbjct: 1485 LVNTVHDCVWVDAHKCVADEVHADLARIMGHTQEAIAALWPDMKLDVPFKAEIHSGPS 1542 >gi|321399199|emb|CBZ08517.1| putative mitochondrial DNA polymerase I protein C [Leishmania infantum JPCM5] Length = 1548 Score = 93.3 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 50/418 (11%), Positives = 113/418 (27%), Gaps = 97/418 (23%) Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRPSR 334 + R + + + L A+ + R + + TGR S QN+P+ Sbjct: 1201 LQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPK--- 1257 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWM 392 + +R +++ G + ++ AD + +E VLA + Sbjct: 1258 --------------------------EEDLRRLIVSRFGAQGMMIEADYSQLEVVVLAAL 1291 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ D + + Sbjct: 1292 CRDPRMMQELRDNVDFHCLRVSLMTKEPYED----------------------------- 1322 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + + +F R + +R+ A Sbjct: 1323 ----VVRKAKVEKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRLIVAEEH 1378 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + ++ + + +E G + R R ++ + ++L P + Y Sbjct: 1379 HYKELCKYYSLVTR----CVEAGADRLLRLRTLDTSLWNANIRRAVMLTEP----IYYFV 1430 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNA------TKAGYD 623 V + T R+ +L VQ ++ + I+ ++ Sbjct: 1431 VPTGSKFDFTRDRKSV------PRLKNYPVQGLAGEIVQIMCGAIVREFYRKRNYGEKAF 1484 Query: 624 IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--------PSWAKGLPLKAEGYESKR 672 +V TVHD + + + L +M P +P KAE + Sbjct: 1485 LVNTVHDCVWVDAHKCVADEVRADLARIMGHTQEAIAALWPDMKLDVPFKAEIHSGPS 1542 >gi|328866460|gb|EGG14844.1| hypothetical protein DFA_10717 [Dictyostelium fasciculatum] Length = 1213 Score = 92.9 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 48/387 (12%), Positives = 97/387 (25%), Gaps = 32/387 (8%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++L LEN + V+ N + +N +LA S + Sbjct: 664 ELLIRILENEAIKKVSFNCQESFKIF-FAYNTYFSPKNIWDPKILAWMYKPESKRVDMST 722 Query: 115 ---ALKLSSQKMEEGKELIARFCKGETHECLYDR---NKPNHREAWRLFGEYCKGDVTVT 168 ++ S E +I + + N+ + + Sbjct: 723 LVVEYQIDSHDKLEMANVIKNLDQHTDNNNNNINPSMTVSNYTCLANDIRNGSILQLILE 782 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY- 227 ++ + Q + + + G T +D + ++ L Sbjct: 783 HKLSDAKLEPLQEMQ-IIPILSKMEYYGVSFCSEALKTCQVHIDSLLENITKQFHLLRDG 841 Query: 228 ----GLVSSSRCLEKLKTWLFLETGLHLE----------DLTETTCQRVLSSNKKLTPQA 273 + + + + + K Sbjct: 842 LGIKMDDFGLSQRGVVLSCINQIKPSRIPQIPDAKAQTLRKFAEIDLSLKEEKAKNGDME 901 Query: 274 IQVFNNRMRAS-RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + R+ + N V+ S G+ T + TGR S Q +PR Sbjct: 902 NLIMACRIYLDHKRFSQFNNIFVKKYISVGQNIYTSWNHTGTATGRLSSSSPNVQQIPRN 961 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDC--------VRSCVIASEGKKLVVADLAGI 384 + + D+ D + R C G +V D + I Sbjct: 962 VANIKVSDKEDGDGNDYDDDDVSDDEEEGTTNASTVHINARDCFRTRPGYTMVALDYSQI 1021 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVT 411 E RV+A + ++ L F+ D Sbjct: 1022 ELRVMAHQSDDEHLLHFFQQDADFPKV 1048 Score = 78.6 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 19/171 (11%), Positives = 41/171 (23%), Gaps = 51/171 (29%) Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 K + K + GR + ++ + Sbjct: 1045 FPKVKKFINDTKADTKKLKYVRTLLGRHRTFYSPHLTPGEIDRQS-------------VN 1091 Query: 600 NIVQAVSRDILAEGMMNATKA--------------------------------GYDIVLT 627 +I+Q + DI+ M+ + ++L Sbjct: 1092 SIIQGSAADIIKAAMIRINQLLIQESKEVNQILQQQGQQQGQTNQQQNKDDIIEARLLLQ 1151 Query: 628 VHDEIVCETP----DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 +HDE++ E P + + H+M + LK + Sbjct: 1152 IHDELIFEIPNVMLEIKPDILEKIKHMMECSTELKVD--LKVAMKIGNSWG 1200 >gi|261329543|emb|CBH12525.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei gambiense DAL972] Length = 1649 Score = 92.5 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 53/402 (13%), Positives = 111/402 (27%), Gaps = 99/402 (24%) Query: 293 TLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L A+ + + R +F + TGR S QN+P+ Sbjct: 1319 ALFRAVLPECKNRVHGEFCHVVTATGRLSSQSPNLQNIPK-------------------- 1358 Query: 352 SDPDPLQIISDCVRSCVIASEGKK---LVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + +R +++ G++ ++ AD + +E VLA ++ + L+ D Sbjct: 1359 ----------EDLRCLIVSRFGRRAGRMIEADYSQLEVVVLAALSRDARMLQELNDNVDF 1408 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + + V Sbjct: 1409 HCLRVSLMTKEPYEDVIH---------------------------------KVKQLKDPH 1435 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + +F R A T R+ A Q + + + + Sbjct: 1436 YIQLRQQAKTFSFQRQYGAGTSTIATTTGLSETEVVRLIAAEEQHYKDLGRYY----RLV 1491 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 +E G + + R + + ++L P + Y V + T ++ Sbjct: 1492 TDCVEAGADRLLQLRTLDATSWPPTMRRMVLLTEP----MHYFVVPTGSKFDFTKDKKAV 1547 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNA---------TKAGYDIVLTVHDEIVCETPDT 639 +L VQ ++ +I+ +V TVHD + + ++ Sbjct: 1548 ------PRLKNYPVQGLAGEIVQIMCGKIIRRFYAKRNYNDKAFLVNTVHDCVWIDAHES 1601 Query: 640 -DEFNASMLYHLMTSN--------PSWAKGLPLKAEGYESKR 672 + + +M+S P +P KAE + Sbjct: 1602 VADEVVDDVSAIMSSTSEVISSLWPGVKLDVPFKAEIHIGPS 1643 >gi|297476119|ref|XP_002688485.1| PREDICTED: polymerase (DNA directed) nu [Bos taurus] gi|296486338|gb|DAA28451.1| polymerase (DNA directed) nu [Bos taurus] Length = 158 Score = 92.1 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 22/124 (17%) Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-- 621 GR + R++ Q R+ +VQ + D+ M+ A Sbjct: 1 MGRRRPLPRI---RAHDPQLRAQAERQAA------NFVVQGSAADLCKMAMIRIFTAMAT 51 Query: 622 -----YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTS-----NPSWAKGLPLKAEGYES 670 ++ +HDE++ E D+ + L M + +PLK Sbjct: 52 SPTLTARLLAQIHDELLFEVEDSQVPEFTALVQGTMEALQHVPALELQLQVPLKVSLSAG 111 Query: 671 KRYR 674 + + Sbjct: 112 RSWG 115 >gi|72391456|ref|XP_846022.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei TREU927] gi|62176585|gb|AAX70690.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei] gi|70802558|gb|AAZ12463.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 1649 Score = 92.1 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 53/402 (13%), Positives = 113/402 (28%), Gaps = 99/402 (24%) Query: 293 TLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L A+ + + R +F + TGR S QN+P+ Sbjct: 1319 ALFRAVLPECKNRVHGEFCHVVTATGRLSSQSPNLQNIPK-------------------- 1358 Query: 352 SDPDPLQIISDCVRSCVIASEGKK---LVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + +R +++ G++ ++ AD + +E VLA ++ + L+ D Sbjct: 1359 ----------EDLRCLIVSRFGRRAGRMIEADYSQLEVVVLAALSRDARMLQELNDNVDF 1408 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + + V + + Sbjct: 1409 HCLRVSLMTKEPYEDVIHKVKQVKDPH--------------------------------- 1435 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + +F R A T R+ A Q + + + + Sbjct: 1436 YIQLRQQAKTFSFQRQYGAGTSTIATTTGLSETEVVRLIAAEEQHYKDLGRYY----RLV 1491 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 +E G + + R + + ++L P + Y V + T ++ Sbjct: 1492 TDCVEAGADRLLQLRTLDATSWPPTMRRMVLLTEP----MHYFVVPTGSKFDFTKDKKAV 1547 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNA---------TKAGYDIVLTVHDEIVCETPDT 639 +L VQ ++ +I+ +V TVHD + + ++ Sbjct: 1548 ------PRLKNYPVQGLAGEIVQIMCGKIIRRFYAKRNYNDKAFLVNTVHDCVWIDAHES 1601 Query: 640 -DEFNASMLYHLMTSN--------PSWAKGLPLKAEGYESKR 672 + + +M+S P +P KAE + Sbjct: 1602 VADEVMDDVSAIMSSTSEVISSLWPGVKLDVPFKAEIHIGPS 1643 >gi|32442311|gb|AAP82226.1| DNA polymerase [Podovirus SOG] Length = 419 Score = 92.1 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 52/464 (11%), Positives = 112/464 (24%), Gaps = 102/464 (21%) Query: 95 CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 TLV++R + + + Q++ L A + + + + +N W Sbjct: 1 DTLVMSRLYYPNISDRDYERRPEGMPQRLYGRHSLEAWGYRLKCFKGDFAKN---DSNDW 57 Query: 155 RLFG----EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI-------NDRGYCVDVAL 203 + +YC D VT +++ L+ + L+ + G+ D+ Sbjct: 58 STYTPEMLDYCIQDTQVTLRLYELLQRRMETYADYIKLEMDMAMLMAQQEASGFRFDMDA 117 Query: 204 AHTLNQIVDVERTKLDQELESL--------------------------TYGLVSSSRCLE 237 A + + E + + + T + + Sbjct: 118 AVRVRAQLQDEFDSITNAIAQIYLYVPGKVFTPKRADKKKGYVAGAPMTRLTDFNPTSRQ 177 Query: 238 KLKTWLFLETG----LHLEDLTETTCQRVL------------SSNKKLTPQAIQVFNNRM 281 + L G E + L I++ + Sbjct: 178 NIAWALQTFRGARFTRVTETGKPKVDEATLSEVRDIALSAGNQQLHDECEMFIRLLTLQK 237 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + N+ ++ DG + + +++TGR + + Sbjct: 238 WLGQL-SEGTNSWFNSIEGDGCIHHSC--TLSTQTGRNAHRGPNLGQV------------ 282 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + + R + G +V ADL G+E R+L A Sbjct: 283 -----------------VSAPWARELFVPHPGHIMVGADLEGLELRLLGHYL-------A 318 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 + A R K + A Y G + L+ Sbjct: 319 AFDSGSFAEVVVNGDIHQQNADRVGCTRTQVKTLTYAFIYGAGDVKL---GHSLQPELSD 375 Query: 462 FAHLVKTNSAPEEW----EDAENFCRWMQENHPEHAIEDLFIGT 501 ++ E ++ G Sbjct: 376 AQKKTLGGELRRKFLDAIPGLEPLVDAVKLKVRSTGRLKGLDGR 419 >gi|21929663|gb|AAM81964.1|AF445378_1 DNA polymerase I-like protein C [Trypanosoma brucei] Length = 1649 Score = 91.7 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 53/402 (13%), Positives = 111/402 (27%), Gaps = 99/402 (24%) Query: 293 TLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L A+ + + R +F + TGR S QN+P+ Sbjct: 1319 ALFRAVLPECKNRVHGEFCHVVTATGRLSSQSPNLQNIPK-------------------- 1358 Query: 352 SDPDPLQIISDCVRSCVIASEGKK---LVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + +R +++ G++ ++ AD + +E VLA ++ + L+ D Sbjct: 1359 ----------EDLRCLIVSRFGRRAGRMIEADYSQLEVVVLAALSRDARMLQELNDNVDF 1408 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + + V Sbjct: 1409 HCLRVSLMTKEPYEDVIH---------------------------------KVKQLKDPH 1435 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + +F R A T R+ A Q + + + + Sbjct: 1436 YIQLRQQAKTFSFQRQYGAGTSTIATTTGLSETEVVRLIAAEEQHYKDLGRYY----RLV 1491 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 +E G + + R + + ++L P + Y V + T ++ Sbjct: 1492 TDCVEAGADRLLQLRTLDATSWPPTMRRMVLLTEP----MHYFVVPTGSKFDFTKDKKAV 1547 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNA---------TKAGYDIVLTVHDEIVCETPDT 639 +L VQ ++ +I+ +V TVHD + + ++ Sbjct: 1548 ------PRLKNYPVQGLAGEIVQIMCGKIIRRFYAKRNYNDKAFLVNTVHDCVWIDAHES 1601 Query: 640 -DEFNASMLYHLMTSN--------PSWAKGLPLKAEGYESKR 672 + + +M+S P +P KAE + Sbjct: 1602 VADEVMDDVSAIMSSTSEVISSLWPGVKLDVPFKAEIHIGPS 1643 >gi|281306676|ref|YP_003345482.1| predicted phage DNA Polymerase [Pseudomonas phage phi-2] gi|271277981|emb|CBH51587.1| predicted phage DNA Polymerase [Pseudomonas phage phi-2] Length = 789 Score = 91.7 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 50/430 (11%), Positives = 110/430 (25%), Gaps = 96/430 (22%) Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL--------------NTLVEAMNSDG 302 +T VL + A + N + + + +++ + D Sbjct: 391 STSGEVLKALATFGFAAGSLLNRKAQLDKDNGTYYISHEYNKDGSIKKTKGMLQYIGPDS 450 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 + +L A+ T R S QNLPR + + + + D Sbjct: 451 IIHHSLNVA-ATITARLSSSDPNLQNLPRSDEDDDGVAKSRVKEMFTSRFGDDG------ 503 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT---------- 412 ++ D +E +LA ++G+Q LK + G D++ Sbjct: 504 ------------VIIEVDYTALEVVMLAALSGDQALLKHLQNGTDMHCLRLAAKLKRPYE 551 Query: 413 ----YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 A+ + K QR K A Y A ++ Sbjct: 552 EILAIAKDKHHPEHNSIKQQRTDIKPPSFAAQYGASAS-----GIAFATGVSLEYATEFL 606 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV--KKAWRQKHSRVSELWNELHQ 526 + + A F ++ + + + +R+ + + + Sbjct: 607 ATEARLFPRAIAFRDVVRAEVERTGALPTGLMREQDDAGNFRVYRRGYYQADGGTCYSFR 666 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 F+ + + + Y + ++ ++ L +GR + Sbjct: 667 QFDVWDAEARKRVMGFKPTQIANYWCQGESGYLMTLSAGRVM------------------ 708 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-S 645 R M ++ VHD + + + Sbjct: 709 --RWLIQHPMF----------------MSKI-----FMINNVHDALYFDVHKDYLKEVAA 745 Query: 646 MLYHLMTSNP 655 +M P Sbjct: 746 AAKAIMEDAP 755 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 40/295 (13%), Positives = 82/295 (27%), Gaps = 60/295 (20%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL--K 58 M T +D ET++ L + D ++L + D D V + + + Sbjct: 1 MRTRILDLETQNHPYLGAV-ASAHCPDNYIVLAGWRDD------VDGVAGTPVERRFNNR 53 Query: 59 EALENTD-------VTIVAHNSYFERTVLK-ACFNLDIP----IHRWICTLVLARSNG-- 104 E ++ +V HN+ +E + + R +CT + Sbjct: 54 EEADDPAWFNLDGVDLLVCHNAMYEMSWFITRYQPEFLKYLKRGGRVLCTQLGEYLCSHQ 113 Query: 105 ---LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 P+ L V + + + + L+++ L EY Sbjct: 114 TWTYPA-LNEVAQKHGGTPKVDG--------------VKLLWEQGVLTADIDPALLSEYL 158 Query: 162 K---GDVTVTREIFKRLEPLSSKEQELWYLDQT---------INDRGYCVDVALAHTLNQ 209 GD+ T F +K + G VD +A + Sbjct: 159 IGPSGDIENTARSFYGQMQYLTKMGMWRMFLERCEGMVAFSFCEAAGLYVDQQVAQRNHA 218 Query: 210 IVDVERTKLDQELE----SLTYGLVSSSRCLEKLKTWLF---LETGLHLEDLTET 257 +E +++++ L + L LF ++ + Sbjct: 219 AQLLELEGINKQIFALLPELPETFEFNWGSDYHLSALLFGGEVKYDERVPRTDAD 273 >gi|157866599|ref|XP_001687691.1| mitochondrial DNA polymerase I protein C [Leishmania major strain Friedlin] gi|68125305|emb|CAJ03123.1| putative mitochondrial DNA polymerase I protein C [Leishmania major strain Friedlin] Length = 1548 Score = 91.7 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 52/416 (12%), Positives = 113/416 (27%), Gaps = 93/416 (22%) Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRPSR 334 + R + + + L A+ + R + + TGR S QN+P Sbjct: 1201 LQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIP---- 1256 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 E+L ++I ++ ++ AD + +E VLA + Sbjct: 1257 KEEDLRRLIVSRFSAQGM-----------------------MIEADYSQLEVVVLAALCR 1293 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + ++ D + + Sbjct: 1294 DPRMMQELRDNIDFHCLRVSLMTKEPYED------------------------------- 1322 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + +F R + +R+ A + Sbjct: 1323 --VVRKAKVEKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRLIVAEEHHY 1380 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +S+ ++ + + +E G + R R ++ + ++L P + Y V Sbjct: 1381 KELSKYYSLVTR----CVEAGADRLLRLRTLDTSLWNANIRRVVMLTEP----MYYFVVP 1432 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNA------TKAGYDIV 625 + T R+ +L VQ ++ + I+ ++ +V Sbjct: 1433 TGSKFDFTRDRKSV------PRLKNYPVQGLAGEIVQIMCGAIVREFYRKRNYGEKAFLV 1486 Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSN--------PSWAKGLPLKAEGYESKR 672 TVHD + + + L +M P +P KAE + Sbjct: 1487 NTVHDCVWVDAHKCVADEVCADLARIMGHTQEAIAALWPDMKLDVPFKAEIHSGPS 1542 >gi|32442307|gb|AAP82224.1| DNA polymerase [Podovirus SOG] Length = 419 Score = 91.3 bits (225), Expect = 4e-16, Method: Composition-based stats. Identities = 52/461 (11%), Positives = 112/461 (24%), Gaps = 102/461 (22%) Query: 95 CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 TLVL+R + + Q++ L A + + + + +N W Sbjct: 1 DTLVLSRLYYPNISDRDYERRPDGMPQRLYGRHSLEAWGYRLKCFKGDFAKN---DSNDW 57 Query: 155 RLFG----EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI-------NDRGYCVDVAL 203 + +YC D VT +++ L+ + L+ + G+ D+ Sbjct: 58 STYTPEMLDYCIQDTQVTLRLYELLQRRMETYADYIKLEMDMAMLMAQQEASGFRFDMDA 117 Query: 204 AHTLNQIVDVERTKLDQELESL--------------------------TYGLVSSSRCLE 237 A + + E + + + + T + + Sbjct: 118 AVRVRAQLQDEFDSITEAIAKIYLYVPGKVFTPKRADKKRGYVAGAPMTRLTDFNPTSRQ 177 Query: 238 KLKTWLFLETGLHLEDLT----ETTCQRVL------------SSNKKLTPQAIQVFNNRM 281 + L G +T + L I++ + Sbjct: 178 NIAWALQTFRGARFTKITETGKPKVDEATLSEVRDIALSAGNQQLHDECEMFIRLLTLQK 237 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + N+ ++ DG + + +++TGR + + Sbjct: 238 WLGQL-SEGTNSWFNSIEGDGCIHHSC--TLSTQTGRNAHRGPNLGQV------------ 282 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + + R + G +V ADL G+E R+L A Sbjct: 283 -----------------VSAPWARELFVPHPGHIMVGADLEGLELRLLGHYL-------A 318 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 + A R K + A Y G + L+ Sbjct: 319 AFDEGSFAEVVVNGDIHQQNADRVGCTRTQVKTLTYAFIYGAGDVKL---GHSLQPELSD 375 Query: 462 FAHLVKTNSAPEEW----EDAENFCRWMQENHPEHAIEDLF 498 ++ E ++ Sbjct: 376 AQKKTLGGELRRKFLDAIPGLEPLVDAVKLKVRSTGRLKGL 416 >gi|328883338|emb|CCA56577.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712] Length = 571 Score = 91.3 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 57/389 (14%), Positives = 102/389 (26%), Gaps = 119/389 (30%) Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 ++T + L+ P + + R + ++ DGR R G + Sbjct: 251 KSTRRWELAEL--DHPAVEPLIAY-KKLYRIWTAHGWSWLQDWVRDGRFRPEY-LPGGTV 306 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 +GRW+ +P+ +R V+A +G + Sbjct: 307 SGRWTTNGGGALQIPK-------------------------------VIRRAVVADDGWR 335 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 LVVAD +E RVLA ++ + ++ +DLY R+F+ K+ Sbjct: 336 LVVADADQMEPRVLAAISRDPGLMEVAGHPDDLYTRLSDRAFSGDRD--------HAKIA 387 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 L Y T+G L A L Sbjct: 388 LLGAIY----------GQTSGDGLKNLAAL------------------------------ 407 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 R++ R + +A + E R V + + Sbjct: 408 ---------------RRRFPRAVAY---VDEAAKAGEEGRLVRTWLGRTSPRAVGAGEAE 449 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNT---TTRQLTREYTYGGKLTENIVQAVSRD--IL 610 G + G +VQ + D +L Sbjct: 450 EAG-----------LPQEGGEQPAEEGEFVPGYASGNARARGRFTRNFVVQGSAADWALL 498 Query: 611 AEGMMN--ATKAGYDIVLTVHDEIVCETP 637 + ++V HDE++ P Sbjct: 499 MLAALRRSLAGMRAELVFFQHDEVIVHCP 527 >gi|61676024|gb|AAX51677.1| DNA polymerase I [Thermocrinis ruber DSM 12173] Length = 169 Score = 91.3 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 61/147 (41%) Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 LQ I +R A EG V+AD + IE R+ A GE +KAF+ G DL+ T Sbjct: 1 DPNLQNIPKDLRRIFKAEEGNLFVIADFSQIELRIAAEYVGEIRMIKAFQEGRDLHRYTA 60 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + +TK++R + K + L Y AK + A+T G++L Sbjct: 61 SILLGKREEDITKEERQLAKAVNFGLIYGISAKGLSQYAATYGIDLPVEEAQAIRERFFS 120 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIG 500 +E +++ ++E + Sbjct: 121 YFEGFKDWHNKVKEELKKTGKSSGHTL 147 >gi|194100330|ref|YP_002003760.1| gp5 [Enterobacteria phage EcoDS1] gi|193201325|gb|ACF15804.1| gp5 [Enterobacteria phage EcoDS1] Length = 723 Score = 91.3 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 98/766 (12%), Positives = 201/766 (26%), Gaps = 154/766 (20%) Query: 7 DFETRSPIDLT---KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 D ET +D CG+ AE + + P+ + ++E + Sbjct: 11 DIETNGLLDTVSQFHCGVLINAESNETLKYGVA----PMVGIVGGFKEYV-HKVEEIAAS 65 Query: 64 TDVTIVAHN-SYFERTV---LKA-CFN--LDIPIHRWICTLVLARSNGLPSALKAVGEA- 115 D +V HN ++ LK F + P H+ I TLVL R +G Sbjct: 66 PDGMLVFHNGINYDVPAIDKLKRLYFGKRFNFPKHKMIDTLVLGRLMYPNIKFSDMGAVK 125 Query: 116 ------------------LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 +L K E + +A+ CK E E + Sbjct: 126 AGRLPPQMMGRQSLEAWGYRLGEMKGEYKHDYVAK-CKAEGIEYKAGDEWLF---PSQEM 181 Query: 158 GEYCKGDVTVTREIFKRLEPL----------------SSKEQELWYLDQTINDRGYCVDV 201 +Y DV VT +FK+ E + + + GY ++ Sbjct: 182 LDYNVQDVVVTLALFKKFLTDKYYFQSEQFAFEQIYALRLEHDAAWTCAKMERNGYPMNT 241 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261 + L + + V+R +L +L S + E + + + Sbjct: 242 EMVEGLYRELTVKRAELLDKLRSTFGSWYAPKGGKEFFRHPRTGKDLPKYPRVVYPKVGG 301 Query: 262 VLSSNKKLTPQAIQVFNNRMRASR------SAVLKL-------NTLVEAMNSDGRLRGTL 308 + K + R + + + + L + + G Sbjct: 302 IFKKPKNKAQRLGLEPCERDTRDTMEGAPFTPITYVEFNPGSGDHLAKVLMERGWEPVDF 361 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + TG+ +++ P ++ +++ + + ++ + Sbjct: 362 -----TDTGKPVVDDETLEHVKLPDAEAQDCVELVREYLVVQKRIGQAAEGKNAWLK--L 414 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKA-----FETGEDLYVTTYARSFNVAPAQ 423 + +G+ + G + ++ A ET + + + Sbjct: 415 VGPDGRMHGSINPCGAVTGRATHSSPNMAQVPANGAPYGETCRGAFGAAWNKKDGKPDPW 474 Query: 424 VTKDQRAIGKVMEL------ALGYQGGAKAF--------QKMASTTGLNLNTFAHLVKTN 469 + +EL A + GG A A GL N Sbjct: 475 I--QVGVDASGLELRCLGNRAAPFDGGEYAKTVVEGDIHWANAVNAGLAPNVKRDKSNHE 532 Query: 470 S-APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 A + + + + K + + + +L + Sbjct: 533 HEAFRNNAKTFIYAFLYGAGAAKIGLIVGGGKKEGAALMKKFIEGTPAIKDLREAVSNTL 592 Query: 529 EQTIEN--GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 + G+ I+ KRR + + GR + R + Sbjct: 593 ISDSKWVDGENIVKWKRRWLRGL--------------DGRRIHIRSPHS----------- 627 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDIV---------LTVHDEIV 633 ++Q + ++ +AGY I VHDE+ Sbjct: 628 ----------ALNALLQGDGAVVCKHWIVETERMLEEAGY-IHGWEGDFAYMAWVHDELQ 676 Query: 634 CETPDTDEFNASMLYHL----MTSNPS-WAKGLPLKAEGYESKRYR 674 + A + + M + L EG ++ Sbjct: 677 IACR--TQEIAEEVVKIAQLAMRKVGEFYNFKCVLDTEGKIGPTWK 720 >gi|32442309|gb|AAP82225.1| DNA polymerase [Podovirus SOG] Length = 419 Score = 91.3 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 51/464 (10%), Positives = 111/464 (23%), Gaps = 102/464 (21%) Query: 95 CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 TLVL+ + + Q++ L A + + + + +N W Sbjct: 1 DTLVLSSLYYPNISDRDYERRPDGMPQRLYGRHSLEAWGYRLKRFKGDFAKN---DSNDW 57 Query: 155 RLFG----EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI-------NDRGYCVDVAL 203 + +YC D VT +++ L+ + L+ + G+ D+ Sbjct: 58 STYTPEMLDYCIQDTQVTLRLYELLQRRMETYADYIKLEMDMAMLMAQQEASGFRFDMDA 117 Query: 204 AHTLNQIVDVERTKLDQELESL--------------------------TYGLVSSSRCLE 237 A + + E + + + ++ T + + Sbjct: 118 AVRVRATLQDEFDSITKSIAAIYLYVPGKVFTPKRADKKKGYVAGAPMTRLTDFNPTSRQ 177 Query: 238 KLKTWLFLETGLHLED----LTETTCQRVL------------SSNKKLTPQAIQVFNNRM 281 + L G + L I++ + Sbjct: 178 NIAWALQTFRGARFTKVTETGKPKVDEATLSEVRDIALSAGNQQLHDECEMFIRLLTLQK 237 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + N+ ++ DG + + +++TGR + + Sbjct: 238 WLGQL-SEGTNSWFNSIEGDGCIHHSC--TLSTQTGRNAHRGPNLGQV------------ 282 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + + R + G +V ADL G+E R+L A Sbjct: 283 -----------------VSAPWARELFVPHPGHVMVGADLEGLELRLLGHYL-------A 318 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 + A R K + A Y G + L+ Sbjct: 319 AFDQGSFAEVVVNGDIHQQNADRVGCTRTQVKTLTYAFIYGAGDVKL---GHSLQPELSD 375 Query: 462 FAHLVKTNSAPEEW----EDAENFCRWMQENHPEHAIEDLFIGT 501 ++ E ++ G Sbjct: 376 AQKKTLGGELRRKFLDAIPGLEPLVDAVKLKVRSTGRLKGLDGR 419 >gi|298707037|emb|CBJ29839.1| DNA polymerase I (POL I) [Ectocarpus siliculosus] Length = 482 Score = 90.9 bits (224), Expect = 7e-16, Method: Composition-based stats. Identities = 52/346 (15%), Positives = 108/346 (31%), Gaps = 41/346 (11%) Query: 306 GTLQFLGASRTG----RWSGCVFPPQNLPR----PSRSHEELDQIITHLPTSITSDPDPL 357 + A T R G + P +++ D + P Sbjct: 147 HSYSSWEAESTRQVLVRLGGRHGRVYSYPADKVFRVQANFFSDANAEAMKDGGLGARCPW 206 Query: 358 QIISDCV--RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 + R ++AS G V AD + +E R++A ++G+ LK F G D++ T A Sbjct: 207 FAKEAMIKPRDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLKVFADGGDVFRTIAAA 266 Query: 416 S--FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 +T+++R K++ + Y A A L L+ + + Sbjct: 267 LKGRGKKAEDITEEERRQTKIVVYGVLYGQSADALV-----PQLRLSRPEAFKIRQTVLK 321 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV----SELWNELHQAFE 529 + F + ++E+ E + +G R+ ++ + + Sbjct: 322 TFPKLTEFLKKVKEDCKECGYVETLLGR---------RRYLPQINSTDKAERSRAERQAA 372 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 T G A K + + + P+G+ + +++ Sbjct: 373 NTTTQGSAADLLKLAATNVAARLERCEWM--SRPAGKPICTPPPNAAAGGTSSSALASGT 430 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 RD + + +VL++HDE++ E Sbjct: 431 ADATVPCRFP-------RDGGRSQLAR--RPACRLVLSIHDELLYE 467 >gi|153799363|gb|ABS50441.1| DNA polymerase I [Enterococcus phage F4] Length = 299 Score = 90.6 bits (223), Expect = 8e-16, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 80/281 (28%), Gaps = 60/281 (21%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD-DHPVE--LWDCVHDPV------- 52 L +DFET G Y E + F+ + + H Sbjct: 20 YLAMDFETVGDN----GGTDMYRE--EISGFSLTYRYKGEIINGYVPMRHREEDGSPSHL 73 Query: 53 -------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG- 104 + +K E+ T V HN+ F+ + KA + P TL+L Sbjct: 74 NIANVKWAEEGIKRVFESDKAT-VWHNATFDMGLAKASLGIA-PRTPVHDTLILMHLLDE 131 Query: 105 --LPSALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 LK + L + S EE ++ +N A + Y Sbjct: 132 DLPSYQLKVLATRFLNIPSDTFEE----------------MFGKNAKFADIAVEIARWYA 175 Query: 162 KGDVTV-----TREIFKRLEP--------LSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 D V ++ +P E+ + G+ +++ Sbjct: 176 GKDTYVGFLLFEWQLNILNKPSFAKIKKVYERIERPCIMATFEMESEGFHINMEEVEVQR 235 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + + E ++ L++ + +L L+++ Sbjct: 236 KESEAELEEISARLQARFGDVNF--SSPSQLLKLLYVDNDW 274 >gi|32442313|gb|AAP82227.1| DNA polymerase [Podovirus GOM] Length = 404 Score = 90.6 bits (223), Expect = 8e-16, Method: Composition-based stats. Identities = 61/416 (14%), Positives = 103/416 (24%), Gaps = 117/416 (28%) Query: 95 CTLVLARS--------------------NGLPSALKAVGEALKLSSQKMEEGKELIARFC 134 TLVL+R +L+A G L + K E GK L + Sbjct: 1 DTLVLSRLFFTDLLDRDFRSRPANMPANLYGRHSLEAWGHRLGV--HKSEFGKSLDGDWS 58 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR-------LEPLSSKEQELWY 187 G YC+ DV V+ ++ + E + Sbjct: 59 TYTP-----------------EMGAYCQQDVVVSVKVAQLFESKLETHSDCIDTEHRIAD 101 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG------------------- 228 + G+ DV A L + E + +E+ S Sbjct: 102 VMAWQERVGFPFDVDKAQQLESKLRTELDAISEEMRSTFAFVDGGCFTPKRSNGPRGYVE 161 Query: 229 -------LVSSSRCLEKLKTWLFLETGLHLEDLTETT----CQRVLSSNKKLTPQ-AIQV 276 S + + ++ T + VL ++ Sbjct: 162 GAAMCKLKEFSPTSRDHIAWAFETFRNWEPKERTASGRAKIDDSVLKEIGSPEALKFARI 221 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + + + K L + +N G++ + + TGR + P Sbjct: 222 LELQKHLGQLSEGKNAWLQQEVN--GKIHHSCILN--TNTGRMAHLRPNLAQAPSAPEY- 276 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 R+ + V AD +G+E R LA Sbjct: 277 ----------------------------RALFHPGTNRLQVGADASGLELRCLAHYL--- 305 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 A G + + A + R GK + L Y GG A Sbjct: 306 ----APFDGGKFAESVVHGDIHTDLAAIYGTDRKSGKGVTYCLIYGGGDTKLGLTA 357 >gi|108757261|ref|YP_629462.1| hypothetical protein MXAN_1203 [Myxococcus xanthus DK 1622] gi|108461141|gb|ABF86326.1| hypothetical protein MXAN_1203 [Myxococcus xanthus DK 1622] Length = 669 Score = 90.2 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 94/730 (12%), Positives = 174/730 (23%), Gaps = 169/730 (23%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVIL--FAFGFDDHPVELWDCVHDPVMPQVLK 58 M D ET L + G+ ++ A + Q + Sbjct: 1 MNVWSFDTETW----LIQPGLLA----PPLVCGSIAAAAPGSE----RLLDKAQARQFFR 48 Query: 59 EALENTDVTIVAHNSYFERTVLKA-----CFNLD--IPIHRWICTLVLARSNGLPSAL-- 109 EA+ +D +V N ++ V+ A + + R C + + L Sbjct: 49 EAIAASDTRLVGANLAYDLGVMAADDPSLVAPIFAALEAGRLHCVQIREALIDIARGLYG 108 Query: 110 ----------KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA--WRLF 157 G L+ I+ K L Sbjct: 109 VDPSTGRKLDDDEGARYPLALLVQRYLGLDISEDKKNPKAWRLRYAELDGVPVERWPTEA 168 Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND------------RGYCVDVALAH 205 Y K D T ++F R E ++ + L G + Sbjct: 169 AAYPKRDARYTLDVFFRQEAVARETPNGGNLHAEAEQMRAAFALHLASIWGLRTNGDSVA 228 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-------- 257 L + V+ E + + ++ ++ ++L + + Sbjct: 229 VLRERVEREWGENRAKFQAAGIYRADGTKDSKRLAALVTAAYDGQPPITAPSDRFPDGQV 288 Query: 258 -TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 T + L ++ R + L+ + + L +F T Sbjct: 289 ATDRDTLL---GSGDALLEDLGKSGRVDKYKSTYLD----VVEAGTSLPINPRFNVLVST 341 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 R S Q LP+ +R A G Sbjct: 342 TRVSSD---YQQLPQKG-----------------------------GIREVHEARPGFAY 369 Query: 377 VVADLAGIEARVL----AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 D G+E R + W G +A +G D++ A + ++ + Sbjct: 370 CSVDYGGLELRTMAQRAIWELGYSKMAEALNSGLDVHTLAAAEFLGASYDELLPKVK--- 426 Query: 433 KVMELALGYQGGAKAF----QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 LA+ ++ AK + L N A + + D R + Sbjct: 427 AKDPLAVAFRQLAKILNFGKGGGMTGGSLVYNARAKDRVSFCLLAKRADVCGIERIVITV 486 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + + + + W EL Q + + G Sbjct: 487 QRKPKMVCRACVEVAKELDTKWLNAWPE----QRELQQRAKSSTYGGGFADVM------- 535 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 R T ++ Q + Sbjct: 536 ---------------------IPGANILRGGCGYT------------QILNTPFQGLGAV 562 Query: 609 ILAEGMMNATKA----------GYDIVLTVHDEIVCETP--------DTDEFNASMLYHL 650 M ++ G +VL VHDE++ E P D E A ++ Sbjct: 563 GCKLAMWRVSREMYVDRRSPLYGSRLVLMVHDELISELPANSAQRMHDAAERKAYLMREA 622 Query: 651 M-TSNPSWAK 659 M + P A Sbjct: 623 MKETTPDLAP 632 >gi|83286526|ref|XP_730200.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23489855|gb|EAA21765.1| unnamed protein product [Plasmodium yoelii yoelii] Length = 1103 Score = 90.2 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 42/379 (11%), Positives = 101/379 (26%), Gaps = 75/379 (19%) Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 K Q I + + + L + + + + + TGR S Sbjct: 756 EKEKDKIKQIINNIKLYRESKKLFQNYIENLPKYIQKNTKKIHCNLNQLGASTGRLSCDQ 815 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 QN+ + + + + I + +++ I K L+ D Sbjct: 816 PNLQNIHSK----------FRCTISLKLNQLNSISIKKENIKNTSI---NKNLLTFDYKQ 862 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 +E V+A+++ + LK + T ++TK+ R + K + + Y Sbjct: 863 MELFVMAYLSFDNQLLKMLNNSDVFVETAKILF---NTNEITKELRRMTKTVIYGILYGQ 919 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 L ++ ++ + + F + + IG Sbjct: 920 SENGL-----AKNLLISENFAKSLIDNFFNFYPNVYKFMQKQKILVKNMNSVYTLIGR-- 972 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 +R+ + + R + + + L Sbjct: 973 KRIVDL------GIKN---------------------KYRISMNTPIQGCSADIMKFALL 1005 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---A 620 S ++ D N+ N + ++ + Sbjct: 1006 SCNKIISFDNNINK-------------DINIFLKMNN---------INVSLLKKYQNYIK 1043 Query: 621 GYDIVLTVHDEIVCETPDT 639 ++L +HDE++ E + Sbjct: 1044 STKLILQIHDELLFECDEN 1062 >gi|148361461|gb|ABQ59312.1| DNA polymerase I [Venenivibrio stagnispumantis] Length = 158 Score = 90.2 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 1/154 (0%) Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R A EG ++ AD + IE R++A ++ +KAF+ +DL+ T + Sbjct: 1 PKDLRHLFTAPEGYSIITADYSQIELRLVAEYTKDENMVKAFKENKDLHKLTASIITGKN 60 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAE 479 ++TK++R + K + L Y K+ AS+ G+N+ + E ++D + Sbjct: 61 YEEITKEERNLAKAINFGLIYGISPKSLMDYASSNYGINITLPEANKFHKNFFEFYKDIK 120 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + + H + K + Sbjct: 121 KWHEETKNHLNHHGYIIAKTLLGRRILAKKFTDA 154 >gi|77118186|ref|YP_338108.1| DNA polymerase [Enterobacteria phage K1F] gi|72527930|gb|AAZ72982.1| DNA polymerase [Enterobacteria phage K1F] gi|84095014|emb|CAJ29370.2| gp5 protein [Enterobacteria phage K1F] Length = 723 Score = 90.2 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 98/764 (12%), Positives = 201/764 (26%), Gaps = 150/764 (19%) Query: 7 DFETRSPIDLT---KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 D ET +D CG+ AE + + P+ + Q ++E Sbjct: 11 DIETNGLLDTVSQFHCGVLINAESNETLKYGVA----PMVGIVGGFKEYV-QKVEEIAAT 65 Query: 64 TDVTIVAHN-SYFERTV---LKA-CFN--LDIPIHRWICTLVLARSNGLPSALKAVGEA- 115 +V HN ++ LK F + P H+ I TLVL R +G Sbjct: 66 PTGMLVFHNGINYDVPAIDKLKRLYFGKRFNFPKHKMIDTLVLGRLMYPNIKFSDMGAVK 125 Query: 116 ------------------LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 +L K E + +A+ CK E E + Sbjct: 126 AGRLPPKMMGRQSLEAWGYRLGEMKGEYKHDYVAK-CKAEGIEYKAGDEWLF---PSQEM 181 Query: 158 GEYCKGDVTVTREIFKRLEPL----------------SSKEQELWYLDQTINDRGYCVDV 201 +Y DV VT +FK+ E + + + GY ++ Sbjct: 182 LDYNVQDVVVTLALFKKFLTDKYYFQSEQFAFEQIYALRLEHDAAWTCAKMERNGYPMNT 241 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261 + L + + V+R +L +L S + E + + + Sbjct: 242 EMVEGLYRELTVKRAELLDKLRSTFGSWYAPKGGKEFFRHPRTGKDLPKYPRVVYPKVGG 301 Query: 262 VLSSNKKLTPQAIQVFNNRMRASR------SAVLKL-------NTLVEAMNSDGRLRGTL 308 + K + R + + + + L + + G Sbjct: 302 IFKKPKNKAQRLGLEPCERDTRDTMEGAPFTPITYVEFNPGSGDHLAKVLMERGWEPVDF 361 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 + TG+ +++ P + +++ + + ++ + Sbjct: 362 -----TDTGKPVVDDETLEHVKLPDAEAQACVELVREYLVVQKRIGQAAEGKNAWLK--L 414 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKA-----FETGEDLYVTTYARSFNVAPAQ 423 + +G+ + G + ++ A ET + + ++ Sbjct: 415 VGPDGRMHGSINPCGAVTGRATHSSPNMAQVPANGAPYGETCRGAFGAAWNKTDGKPDPW 474 Query: 424 VTKDQRAIGKVMEL------ALGYQGGAKAF--------QKMASTTGLNLNTFAHLVKTN 469 + +EL A + GGA A A GL N + Sbjct: 475 I--QVGVDASGLELRCLGNRAAPFDGGAYAKTVVEGDIHWANAVNAGLAPNVPRDKSNHD 532 Query: 470 S-APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 A + + + + K + + + +L + Sbjct: 533 HDAFRNNAKTFIYAFLYGAGAAKIGLIVGGGKKEGSALMKKFIEGTPAIKDLREAVSNTL 592 Query: 529 EQTIEN--GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 + G+ I+ KRR + + GR + R + Sbjct: 593 ISESKWVDGENIVKWKRRWLKGL--------------DGRRIHIRSPHS----------- 627 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY---------DIVLTVHDEIV 633 ++Q + ++ +AGY + VHDE+ Sbjct: 628 ----------ALNALLQGDGAVVCKHWIVETERMLEEAGYVHGWEGDFAYM-AWVHDELQ 676 Query: 634 CETP--DTDEFNASMLYHLMTSNPS-WAKGLPLKAEGYESKRYR 674 + E + M + L EG ++ Sbjct: 677 IACRTQEIAERTVEIAQLAMRKVGEFYNFKCVLDTEGKIGPTWK 720 >gi|32442289|gb|AAP82215.1| DNA polymerase [Podovirus SOG] Length = 400 Score = 89.8 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 57/467 (12%), Positives = 113/467 (24%), Gaps = 133/467 (28%) Query: 95 CTLVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 TLVL+R +LKA G + Q+ E + Sbjct: 1 DTLVLSRLFNPIRENGHSLKAWGWRVGCLKQEQPENFD---------------------- 38 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE--------QELWYLDQTINDRGYCVDVA 202 E +YC DV + ++ L + + + G+ + Sbjct: 39 -EFTPAMLDYCVQDVRLNEAVYNFLIKEGKIFSEESVSLEHNVAKIIKQQEKNGFFFNTQ 97 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLV-------------------------------- 230 A L + ++ ++ E+ S + Sbjct: 98 QAMELLAELKAKQLAVEDEVHSTFKPKLVDDKLVTPYVKKDGELSKRGMTDEEYDRCIKT 157 Query: 231 -------------SSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTP--- 271 + +++ +L + + L + + Sbjct: 158 QSVEPFMRQKLVDFNLGSRKQIGEYLIDFGWIPKKFTPTGQPIVDEGTLKKIEHIREAKL 217 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 A + + A ++ +++ L D R+ G++ G + TGR + +P Sbjct: 218 IADFLLYQKRIAQVTS--RIDEL-----KDDRVHGSVIPNG-TITGRMTHRNPNMAQVP- 268 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + RSC EG+KLV D +G+E R+LA Sbjct: 269 -----------------------NAGSPYGKECRSCWTIPEGRKLVGIDASGLELRMLAH 305 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 + + R K AL Y G + Sbjct: 306 YMNDPEY---------IEEVVNGDIHTTNQNLAGLKTRDQAKTFIYALVYGAGDAKIGSV 356 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 A + + + + + E Sbjct: 357 AGG------GLKKGKELKQTFFKNLPSLKNLKEKVQKASERGYLKGL 397 >gi|70949566|ref|XP_744181.1| DNA polymerase 1 [Plasmodium chabaudi chabaudi] gi|56524028|emb|CAH74320.1| DNA polymerase 1, putative [Plasmodium chabaudi chabaudi] Length = 1069 Score = 89.4 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 45/380 (11%), Positives = 96/380 (25%), Gaps = 77/380 (20%) Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGC 322 K+ Q I + + + L + + + ++ LGA TGR S Sbjct: 674 EKEKENIKQIISNIKLYRESKKLFQNYIENLPKHIQKNTNKIHCNFNQLGA-STGRLSCD 732 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 QN+ R L + T + + L+ D Sbjct: 733 QPNLQNIHSKFRCTISLKNDDIKPISVKTKHVKNKSV-------------NQNLLTFDYK 779 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 +E V+A+++ + LK + T VTK+ R + K + + Y Sbjct: 780 QMELFVMAYLSFDSQLLKMLNNSDVFVETAKVLF---NTNDVTKELRRMTKTVIYGILYG 836 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 L ++ ++ + + F + + IG Sbjct: 837 QSENGL-----AKNLLVSENFAKSLIDNFFNFYPNVFKFMQKQKILVKNINSVYTLIGR- 890 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 +R+ + + + +L Sbjct: 891 -KRLVD------PTIKN--------------------KYRISMNTPIQGCAADIMKFALL 923 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--- 619 + L Y D + N + ++ K Sbjct: 924 SCHKILSYFD--------------NPNQDIDTFLKMNN---------INISLLKKYKNYI 960 Query: 620 AGYDIVLTVHDEIVCETPDT 639 ++L +HDE++ + + Sbjct: 961 KSTKLILQIHDELLFQCDEN 980 >gi|48697101|ref|YP_024759.1| DNA polymerase I [Pseudomonas phage PaP2] gi|46369536|gb|AAS89617.1| p31 [Pseudomonas phage PaP2] Length = 801 Score = 89.4 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 64/595 (10%), Positives = 142/595 (23%), Gaps = 122/595 (20%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEALKLSSQK 122 +D+ HN ++ L P + T+ GL + + + + Sbjct: 230 SDIPKCFHNGLYDSFHLMRY--HAAPNNWIFDTM------GLSHSWYSELSKDVGFLCSW 281 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-----IFKRLEP 177 + + E + +Y D + + Sbjct: 282 LLYDHKEWKYMADREHKAIGG----------IESYWKYAAYDTHMMMRALIELLKNGDTW 331 Query: 178 LSSKEQELWYLDQ---TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + ++ + L G+ V+ L + + ++L +T + Sbjct: 332 MLRNYKKQFPLVYPSLYGAFEGFRVNNETRLKLVEKAEERLESALKDLRIMTDDPEFNPG 391 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVL---SSNKKLTPQAIQV---FNNRMRASRSAV 288 +++ +L+ G ++ + + P NN ++ Sbjct: 392 SPDQVSEFLYEVLGAKRPPRAKSKSKTDKKSRAFVASQHPIFALFSDRVNNYSLEKKALS 451 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + + RL +L G + TGR++ Sbjct: 452 TYFS----FRQWNSRLLYSLDPFG-TDTGRFASR-------------------------A 481 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE----- 403 S +Q + +G D + EA A+++ +KA Sbjct: 482 SAAWIGTQIQNQPVYAKEMYEPDDGYIAFEMDFSKAEAICTAYLSRCSALIKALCFPDLD 541 Query: 404 ---TGEDLYVTTYARSFNVAPAQVTKDQRAIG-KVMELALGYQGGAKAFQKMASTTGLNL 459 +D Y F++ VTK+ R K + Y G + F Sbjct: 542 NEGNKKDFYKVLGELFFHMEYETVTKEFRNKVLKKIVHGTNYMMGPETFIDNLDDIQTLF 601 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 L + + + +++ A+ V + Sbjct: 602 LAAKILGVVLTLNPKAPKEKT------------------PKDFAKQLLDAYHIPFPEVQQ 643 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 W + T + I R K + S Sbjct: 644 WWESIFMEVLTTNKLINPITGHVRYFFGDPRRNKKIQRQAVAHQS-----------QNFS 692 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-AGYDIVLTVHDEIV 633 ++ + Y Y M++ + +HD +V Sbjct: 693 VDNLNTGYLKAYQY--------------------MLSLEDPRILRLKTQIHDSLV 727 >gi|71402991|ref|XP_804342.1| mitochondrial DNA polymerase I protein D [Trypanosoma cruzi strain CL Brener] gi|70867265|gb|EAN82491.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma cruzi] Length = 1607 Score = 88.6 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 55/430 (12%), Positives = 107/430 (24%), Gaps = 94/430 (21%) Query: 253 DLTETTC------QRVLSSNKKLTPQ--AIQVFNNRMRASRSAVLKLN------TLVEAM 298 +T + L+ KK A + R + +V + Sbjct: 1209 KFRSSTTRQLQVGEDSLNYFKKTHGDKTAETILELR-TMEKLIGTYYENTDDGTGMVSLV 1267 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +S + TGR + QN+P+ +S Sbjct: 1268 HSVDSCIHHELIHNKTNTGRLASANPNCQNIPKEDKS----------------------- 1304 Query: 359 IISDCVRSCVIASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R ++ G+K + AD + +E LA +A + L+ + D + A Sbjct: 1305 ----PLREMFVSRYGEKGMCIEADYSQLEVVALAVLADDFQMLEDLRSNVDFHCKRVAMM 1360 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 P + K + Sbjct: 1361 R---PDLQYTEVLLRAKKN-----------------------------KEPEFVKLRQQA 1388 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 +F R + + + R+ + V + + N Sbjct: 1389 KIFSFQRQYGAGVKMISQSTGLTQDQVRNLIEKERETYRGVDAF----NSMVALSANNFD 1444 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 A I R+V K +I G V+ + + + Sbjct: 1445 ASIQDGSRNVRGHQFFKGMFPVIT----GSRYVFTESDVPEGIMREKSMSAKSTNFSPTH 1500 Query: 597 LTENIVQAVSRDI--LAEGMM-------NATKAGYDIVLTVHDEIVCETPDT-DEFNASM 646 L VQ + +I + GM+ N + TVHD + + A Sbjct: 1501 LKNYPVQGFAGEIVQIMLGMLWRHFLRNNNYNGLAVLTNTVHDCVWIDCHADIFLQVADE 1560 Query: 647 LYHLMTSNPS 656 + +M++ Sbjct: 1561 VETIMSNVRE 1570 Score = 81.3 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 46/306 (15%), Positives = 92/306 (30%), Gaps = 63/306 (20%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVIL--------------------FAFGFDDHP 41 L +D ET + + K + ++ V+L A +DD Sbjct: 498 RYLVLDLETTT-VRRYKRVANPFTKENYVVLSGARDHTGKVFMAGRYFSRNIALRYDDFE 556 Query: 42 VE-LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE-RTVLKACFNLDI--PIHRWICTL 97 V D V + L++ DV V HN F+ + + + T+ Sbjct: 557 VTSTCDLVDGSSQHSLFLPPLDDYDVI-VGHNIKFDLLHIWRDAELRRFLSRGGKVWDTM 615 Query: 98 VLARS-------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 G + L+ + ++ + K++ KE + + K + Sbjct: 616 YAEYLLTGHEVKLGRGAGLEDIAKSYGGQTPKLDAVKE-------------AWAKGKETY 662 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPL---------SSKEQELWYLDQTINDRGYCVDV 201 + L EY GD+ T IF++ + + + G +V Sbjct: 663 EIPYALLSEYLHGDLENTELIFRKHMERALLQRQVIICTARMDGLLCTTEMEYNGLKTNV 722 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLV-------SSSRCLEKLKTWLF-LETGLHLED 253 LA T + + + +L L+ + + + L + F + L+ Sbjct: 723 QLAVTQSNELMGKVVELRNHLDDAIPKEIPPDCRKYFNWSSNQHLIAFFFGGKLKLNTNA 782 Query: 254 LTETTC 259 T Sbjct: 783 RESKTL 788 >gi|147917349|ref|YP_001218832.1| DNA polymerase [Pseudomonas phage 119X] Length = 801 Score = 87.9 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 64/595 (10%), Positives = 142/595 (23%), Gaps = 122/595 (20%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEALKLSSQK 122 +D+ HN ++ L P + T+ GL + + + + Sbjct: 230 SDIPKCFHNGLYDSFHLMRY--HAAPNNWIFDTM------GLSHSWYSELSKDVGFLCSW 281 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-----IFKRLEP 177 + + E + +Y D + + Sbjct: 282 LLYDHKEWKYMADREHKAIGG----------IESYWKYAAYDTHMMMRALIELLKNGDIW 331 Query: 178 LSSKEQELWYLDQ---TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + ++ + L G+ V+ L + + ++L +T + Sbjct: 332 MLRNYKKQFPLVYPSLYGAFEGFKVNNETRLKLVEKAEERLESALKDLRIMTDDPEFNPG 391 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVL---SSNKKLTPQAIQV---FNNRMRASRSAV 288 +++ +L+ G ++ + + P NN ++ Sbjct: 392 SPDQVSEFLYEVLGAKRPPRAKSKSKTDKKSRAFVASQHPIFALFSDRVNNYSLEKKALS 451 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + + RL +L G + TGR++ Sbjct: 452 TYFS----FRQWNSRLLYSLDPFG-TDTGRFASR-------------------------A 481 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE----- 403 S +Q + +G D + EA A+++ +KA Sbjct: 482 SAAWIGTQIQNQPVYAKEMYEPDDGYIAFEMDFSKAEAICTAYLSRCSALIKALCFPDLD 541 Query: 404 ---TGEDLYVTTYARSFNVAPAQVTKDQRAIG-KVMELALGYQGGAKAFQKMASTTGLNL 459 +D Y F++ VTK+ R K + Y G + F Sbjct: 542 NEGNKKDFYKVLGELFFHMEYETVTKEFRNKVLKKIVHGTNYMMGPETFIDNLDDIQTLF 601 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 L + + + +++ A+ V + Sbjct: 602 LAAKILGVVLTLNPKAPKEKT------------------PKDFAKQLLDAYHIPFPEVQQ 643 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 W + T + I R K + S Sbjct: 644 WWESIFMEVLTTNKLINPITGHVRYFFGDPRRNKKIQRQAVAHQS-----------QNFS 692 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-TKAGYDIVLTVHDEIV 633 ++ + Y Y M++ + +HD +V Sbjct: 693 VDNLNTGYLKAYQY--------------------MLSLKDPRILRLKTQIHDSLV 727 >gi|320010013|gb|ADW04863.1| DNA-directed DNA polymerase [Streptomyces flavogriseus ATCC 33331] Length = 568 Score = 87.9 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 66/434 (15%), Positives = 111/434 (25%), Gaps = 138/434 (31%) Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 F + G+ + + + P + + R ++ DGR Sbjct: 234 FAQAGIKVGSTRRWELEAL------DHPAVEPLIRY-KKLYRVWTAHGWGWLQDWVRDGR 286 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 R G + +GRW+ +P+ Sbjct: 287 FRPGY-QPGGTVSGRWTTNGGGALQIPK-------------------------------V 314 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R V+A EG +LVVAD +E RVLA ++ ++ ++ DLY R+F+ Sbjct: 315 IRRAVVADEGWRLVVADADQMEPRVLAAISRDRGLMEVAGHEGDLYKALSDRAFHGDRD- 373 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 K+ L Y T+G L A L Sbjct: 374 -------HAKIALLGAVY----------GQTSGDGLKNLAAL------------------ 398 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R++ + + A + E R Sbjct: 399 ---------------------------RRRFPQAVAY---VDDAAKAGEEGRLVRTWLGR 428 Query: 544 RDVPLVYMKKDKNNLI----LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 P V +D I PSG +Y T + G Sbjct: 429 TSPPAVGADEDGEAGIPQESEEPPSG--------EATGTYGFTPGYASSNARARGRFTRN 480 Query: 600 NIVQAVSRDILAE------------GMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML 647 +VQ + D GM ++V HDE++ P + Sbjct: 481 FVVQGSAADWALLLLAALRRALAAGGM------RAELVFFQHDEVIVHCPAEEASAV--- 531 Query: 648 YHLMTSNPSWAKGL 661 + A + Sbjct: 532 VEAIREAGELAGRV 545 >gi|322829428|gb|EFZ32819.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma cruzi] Length = 576 Score = 87.9 bits (216), Expect = 6e-15, Method: Composition-based stats. Identities = 55/430 (12%), Positives = 107/430 (24%), Gaps = 94/430 (21%) Query: 253 DLTETTC------QRVLSSNKKLTPQ--AIQVFNNRMRASRSAVLKLN------TLVEAM 298 +T + L+ KK A + R + +V + Sbjct: 178 KFRSSTTRQLQVGEDSLNYFKKTHGDKTAETILELR-TMEKLIGTYYENTDDGTGMVSLV 236 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +S + TGR + QN+P+ +S Sbjct: 237 HSVDSCIHHELIHNKTNTGRLASANPNCQNIPKEDKS----------------------- 273 Query: 359 IISDCVRSCVIASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R ++ G+K + AD + +E LA +A + L+ + D + A Sbjct: 274 ----PLREMFVSRYGEKGMCIEADYSQLEVVALAVLADDFQMLEDLRSNVDFHCKRVAMM 329 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 P + K + Sbjct: 330 R---PDLQYTEVLLRAKKN-----------------------------KEPEFVKLRQQA 357 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 +F R + + + R+ + V + + N Sbjct: 358 KIFSFQRQYGAGVKMISQSTGLTQDQVRNLIEKERETYRGVDAF----NSMVALSANNFD 413 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 A I R+V K +I G V+ + + + Sbjct: 414 ASIQDGSRNVRGHQFFKGMFPVIT----GSRYVFTESDVPEGIMREKSLSAKSTNFSPTH 469 Query: 597 LTENIVQAVSRDI--LAEGMM-------NATKAGYDIVLTVHDEIVCETPDT-DEFNASM 646 L VQ + +I + GM+ N + TVHD + + A Sbjct: 470 LKNYPVQGFAGEIVQIMLGMLWRHFLRNNNYNGLAVLTNTVHDCVWIDCHADIFLQVADE 529 Query: 647 LYHLMTSNPS 656 + +M++ Sbjct: 530 VETIMSNVRE 539 >gi|58257974|gb|AAW69382.1| DNA polymerase I [Hydrogenothermus marinus] Length = 172 Score = 87.9 bits (216), Expect = 6e-15, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 1/161 (0%) Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 LQ I +R ++ ++VAD + IE R+ A +Q + AF+ G DL+ T Sbjct: 1 DPNLQNIPTSLRKLFRPAKNYSMIVADYSQIELRIAAEYTKDQVMINAFKQGLDLHRFTA 60 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA-STTGLNLNTFAHLVKTNSAP 472 + +TK++R + K + L Y ++ + A S+ G+ ++ + Sbjct: 61 SLITGKDYEDITKEERQMAKAINFGLIYGISPRSLMEYASSSYGVEISLKEAQIFHEKFF 120 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 E ++ + + +E H ++ + Sbjct: 121 EHYKGFKKWHEETKEKLKNHREIEVVSLLGRRMKVMKFTDA 161 >gi|50954578|ref|YP_061866.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951060|gb|AAT88761.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] Length = 570 Score = 86.7 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 67/444 (15%), Positives = 107/444 (24%), Gaps = 133/444 (29%) Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 L ++ + + L L GL + +T L P Sbjct: 213 LEDLAAQIRAALDSPDLNPDSPPALLRAL-QRAGLRV----SSTSSWELREL--DHPVIE 265 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + + +R + +E+ DGR R G TGRW+ LP+ Sbjct: 266 PLLHY-KKLARLLTANGWSWLESWVQDGRFRPDY-VPGGVVTGRWATRGGSALQLPK--- 320 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R V+A G KLVVAD A +E R+L +A Sbjct: 321 ----------------------------QLRGAVVADPGWKLVVADAAQLEPRILTGLAQ 352 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q A + + +RA KV L Y Sbjct: 353 DQRMAAAGRG---------QDLYTGIVSAGAVTERAQAKVAMLGAMYGA----------- 392 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A R Sbjct: 393 ------------------------------------TTGESGRLMPRLARAFPRAVR--- 413 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 L + + E G+A+ + R P S S Sbjct: 414 ---------LVEEAARAGERGEAVTSHLGRSSP------RPGGSWQETQSAASTAESTPA 458 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------------ 622 + R +G +VQA + + M Sbjct: 459 DERRARAQARD-------WGRFTRNFVVQASAAEWALCWMAELRNRLTALAPGRPLTEAP 511 Query: 623 DIVLTVHDEIVCETPDTDEFNASM 646 +V +HDE++ TPD Sbjct: 512 HLVYFLHDEVIVHTPDALAEAVGE 535 >gi|226308720|ref|YP_002768680.1| DNA polymerase [Rhodococcus erythropolis PR4] gi|226187837|dbj|BAH35941.1| putative DNA polymerase [Rhodococcus erythropolis PR4] Length = 516 Score = 86.7 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 52/397 (13%), Positives = 103/397 (25%), Gaps = 98/397 (24%) Query: 190 QTINDRGYCVDVALAHTLNQI----------VDVERTKLDQELESLTYGLVSSSRCLEKL 239 + G L + + +L ++ + V+ S +E Sbjct: 151 AEMTHTGLPFSTQKHRELLEERLGPRPTGYDLPARMQELAAQISEVFGRTVNPSSSVEIT 210 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 + F G+ L + Q + P + +R ++ +++ Sbjct: 211 EA--FGRQGIELPSTRKWFLQEI------DHPAVPLLLRHR-ELAKLYSTNGWQWMDSWV 261 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 R R + G +GRW+ +P+ Sbjct: 262 RGDRFRP-IYVPGGVVSGRWASRGGGALQIPKT--------------------------- 293 Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +RS V+A G VVAD +E R+LA M+G++ + A + + Sbjct: 294 ----MRSSVVADPGHVFVVADAGQLEPRILAAMSGDRRMMAA---------AGDDDLYAL 340 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 A+ RA KV L + Y A + + + + A Sbjct: 341 VGAEAFGGDRAKAKVAILGVLYGATAGEAKALLILL----------------RKRFPVAV 384 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 + + + +G AC + ++ Sbjct: 385 EYVEQAAKAGERGEVVKSLLGRACP----------PPSPDFYSHGDAHAR---------- 424 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 R V + +L R + D Sbjct: 425 --GRFTRNFVVQATASEWALCLLADLRRRLAEDPDGE 459 >gi|47934730|gb|AAT39803.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934732|gb|AAT39804.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934734|gb|AAT39805.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 86.7 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 74/225 (32%), Gaps = 51/225 (22%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG-------------------LVSSS 233 G+ ++ A A L ++ + + E+ ++ + Sbjct: 1 ERNGFKLNQAAALQLLSVLKTKLDSIQVEMATIFPPIITSGRTHKTSGKPLKDIIEPFNP 60 Query: 234 RCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 +++ L + + + + + VL+S P+A M + + + Sbjct: 61 GSRQQIAERLIEKGWKPTKRTEKGSVIVDEEVLASL--DYPEAKA-LAEYMMLQK-RIAQ 116 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 +++ +EA+ DGR+ G + GA TGR + +P Sbjct: 117 IDSWLEAVGKDGRVHGRVITNGA-VTGRMTHMSPNMAQVP-------------------- 155 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + R +G KLV D AG+E R+LA + Sbjct: 156 ----NSGSPYGHECRDLWTVEKGYKLVGIDAAGLELRMLAHYMND 196 >gi|47934726|gb|AAT39801.1| DNA polymerase [Uncultured T7-like podovirus] Length = 201 Score = 86.7 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 51/226 (22%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG-------------------LVSSS 233 G+ ++ A A L ++ + + E+ ++ + Sbjct: 1 ERNGFKLNQAAALQLLSVLKTKLDSIQVEMATIFPPIITSGRTHKTSGKPLKDIIEPFNP 60 Query: 234 RCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 +++ L + + + + + VL+S P+A M + + + Sbjct: 61 GSRQQIAERLIEKGWKPTKRTEKGSVIVDEEVLASL--DYPEAKA-LAEYMMLQK-RIAQ 116 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 +++ +EA+ DGR+ G + GA TGR + +P Sbjct: 117 IDSWLEAVGKDGRVHGRVITNGA-VTGRMTHMSPNMAQVP-------------------- 155 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + R +G KLV D AG+E R+LA +Q Sbjct: 156 ----NSGSPYGHECRDLWTVEKGYKLVGIDAAGLELRMLAHYMNDQ 197 >gi|37956877|gb|AAP34143.1| gene 5 [Enterobacteria phage T7] Length = 704 Score = 86.7 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 52/474 (10%), Positives = 105/474 (22%), Gaps = 130/474 (27%) Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKLTPQ---AIQVFNNR 280 +V + + ++ L + + + VL + P+ AI + Sbjct: 330 EHVVFNPSSRDHIQKKLQETGWIPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEY 389 Query: 281 MRASR---SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSH 336 + + + + + DG++ G++ GA TGR + +P S Sbjct: 390 LMIQKRIGQSSEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIPGVRSPYG 448 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 E+ P D +G+E R LA Sbjct: 449 EQCRAAFGAEHHLDGITGKP-----------------WVQAGIDASGLELRCLAHF---- 487 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + F+ GE + R K Y G + Sbjct: 488 --MARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDEKI-------- 537 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + +KK + + Sbjct: 538 ------------------------------------GQIVGAGKERGKELKKKFLENTPA 561 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 ++ L + Q ++ + K + + GR + R Sbjct: 562 IAALRESIQQTLVESSQWVAGEQQVKWKRR------------WIKGLDGRKVHVRSPHA- 608 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDI-------- 624 ++Q+ I ++ + G Sbjct: 609 --------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAY 648 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673 + VHDEI + + + W L EG + Sbjct: 649 MAWVHDEIQVGCRTEEIAQV--VIEIAQEAMRWVGDHWNFRCLLDTEGKMGPNW 700 >gi|290958457|ref|YP_003489639.1| DNA polymerase I [Streptomyces scabiei 87.22] gi|260647983|emb|CBG71088.1| putative DNA polymerase I [Streptomyces scabiei 87.22] Length = 571 Score = 86.7 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 68/476 (14%), Positives = 117/476 (24%), Gaps = 125/476 (26%) Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL-- 243 + +N G + + + + ER E L S + Sbjct: 167 MLVAAEMNRAGLPWRPDVHREVLRELLGERYAGGGEPRRLAELAEEVSNAFGRRVRPDLP 226 Query: 244 ------FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 F G+ ++ + V P + + R V + ++ Sbjct: 227 ADVVKAFARAGVRVKSTRRWEIESV------DHPAVKPLLEY-KKLYRIWVAHGWSWLQD 279 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 DGR R G + TGRW +P+ Sbjct: 280 WVRDGRFRPEFLAHG-TVTGRWVTNGGGALQIPK-------------------------- 312 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R +A G +LVVAD +E RVLA ++ + + DLY Sbjct: 313 -----VIRRACVADPGWRLVVADADQMEPRVLAAISRDPGLMDVAGRPGDLYQAVS---- 363 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 + R K+ L Y T+G L A L Sbjct: 364 ----DRAFSGDREQAKLAVLGAVY----------GQTSGDGLKNLAAL------------ 397 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 R++ ++ + E G+ Sbjct: 398 ---------------------------------RRRFPHAVRYVDD----AARAGEEGRL 420 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPS-----GRSLVYRDVGNNRSYLNTTTRQLTREYT 592 + R P D +P G R G ++ +R Sbjct: 421 VRTWLGRTCPPAAGDPDAAGEEAGIPQADDGPGAPEQGRGQGQETEWVPGYASTDSRAR- 479 Query: 593 YGGKLTENIVQAVSRDILAEGMMNA----TKAGYDIVLTVHDEIVCETPDTDEFNA 644 G +VQ + D + ++V HDE++ P + Sbjct: 480 -GRFARNFVVQGSAADWTLLLLAALRRTLDGMAAELVFFQHDEVIVHCPAAETDAV 534 >gi|229819538|ref|YP_002881064.1| DNA-directed DNA polymerase [Beutenbergia cavernae DSM 12333] gi|229565451|gb|ACQ79302.1| DNA-directed DNA polymerase [Beutenbergia cavernae DSM 12333] Length = 585 Score = 86.7 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 63/432 (14%), Positives = 106/432 (24%), Gaps = 130/432 (30%) Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 L ++ + L L +GL + ++ + P Sbjct: 220 LEALAAQVRDALDVPTLNPDSQPDLLRAL-RRSGLDVTSTSKW------ELQRSEHPAVA 272 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + R ++ +DGR R G TGRW+ LP+ Sbjct: 273 PLLEY-KKLYRLLSANGWAWMDQWVTDGRFRAE-WVPGGVVTGRWATRGGGALQLPKG-- 328 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +RS V A +G LV+AD A +E R+LA M+G Sbjct: 329 -----------------------------IRSAVRADDGWLLVIADAAQLEPRILAAMSG 359 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + A G+ A D RA KV LA Y Sbjct: 360 DDAMVAAGARGDLYAGLVEAGVV---------DTRAHAKVAMLAALYGATTG-------- 402 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + A + ++G + +AW Sbjct: 403 --------QAAMLVPRLARAYPRAVGLVDAAARVGENGGVVSTWLGRSSVPPGEAWH--- 451 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 A + A +RR Sbjct: 452 ------------AAQSAASAPDATPDDERR------------------------------ 469 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY---------DIV 625 +R +G +VQ + + M + + Sbjct: 470 -----------ARSRARDWGRFTRNFVVQGTAAEWALCWMAALRRRLASLEGDAGVPRLA 518 Query: 626 LTVHDEIVCETP 637 +HDE++ TP Sbjct: 519 FFLHDELIVHTP 530 >gi|170781985|ref|YP_001710317.1| putative DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus] gi|169156553|emb|CAQ01704.1| putative DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus] Length = 592 Score = 86.7 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 85/583 (14%), Positives = 137/583 (23%), Gaps = 146/583 (25%) Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 W T V AR+ A L+LS + A +D P RE Sbjct: 88 WDDTAVWARTLIAAGVRVARCHDLRLSHAILRL-STQTADSALARLPAGPWDAAAPAERE 146 Query: 153 AWRLFGEYCKGDV---------TVTREIF----------KRLEPLSSKEQELWYLDQTIN 193 + D + RL L + E + ++ Sbjct: 147 PSASATLFDDLDASDGRSPDELVAELRLQLEAIAGSAESGRLRLLLAAESAGALVAAEMS 206 Query: 194 DRGYCVDVALAHTLNQIVDV----------ERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 G D A+ L + +L + + + + L Sbjct: 207 ADGLPWDTAVHDALLVDLLGGRPAHSGAPPALLRLAARIREILAAPDLNVDSPPDVLRAL 266 Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 G+ + Q + P + + + SR T +E DGR Sbjct: 267 -RRAGVDASSTRQWELQEI------DHPVIAPLLEH-KKLSRLLTANGWTWMETWIRDGR 318 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 G TGRW+ LPR Sbjct: 319 FHPEY-VPGGVVTGRWAASGGGALQLPR-------------------------------Q 346 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +RS V A G +LVVAD A +E RVLA ++ ++ A + A Sbjct: 347 IRSAVRADPGWRLVVADAAQLEPRVLAALSEDRAMADAGRGTDLYQGLVDAGVV------ 400 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 D RA KV L Y + + A + Sbjct: 401 ---DTRAHAKVAMLGAMYGATSG----------------ESGRLMPRLVRAYPRATGYVE 441 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 + +G + AW V ++ + + + R Sbjct: 442 RAARAGESGGVVSTRLGRSSPPPGDAWVD----VQQIGRAGEASPSDAARARTSARDQGR 497 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 V + L R Sbjct: 498 FTRNFVVQGSAAEWALCWLAGLRRR----------------------------------- 522 Query: 604 AVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETPDTDEFNA 644 ++ + G +V +HDE++ TPD Sbjct: 523 -LAA---------LERPGSRPHLVFFLHDEVMVHTPDDRVDEV 555 >gi|229488378|ref|ZP_04382244.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121] gi|229323882|gb|EEN89637.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121] Length = 520 Score = 86.3 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 50/367 (13%), Positives = 97/367 (26%), Gaps = 88/367 (23%) Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269 + +L ++ + V+ S +E + F G+ L + Q + Sbjct: 181 DLPARMQELAAQISEVFGRTVNPSSSVEITEA--FGRQGIELPSTRKWFLQEI------D 232 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P + +R ++ +++ R R + G +GRW+ + Sbjct: 233 HPAVPLLLRHR-ELAKLYSTNGWQWMDSWVRGDRFRP-IYVPGGVVSGRWASRGGGALQI 290 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P+ +RS V+A G VVAD +E R+L Sbjct: 291 PKT-------------------------------MRSSVVADPGHVFVVADAGQLEPRIL 319 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A M+G++ + A + + A+ RA KV L + Y A Sbjct: 320 AAMSGDRRMMAA---------AGDDDLYALVGAEAFGGDRAKAKVAILGVLYGATAG--- 367 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 + + A + + + +G AC Sbjct: 368 -------------EAKALLVLLRKRFPVAVEYVEQAAKAGERGEVVKSLLGRACP----- 409 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + ++ R V + +L R + Sbjct: 410 -----PPSPDFYSHGDAHAR------------GRFTRNFVVQATASEWALCLLADLRRRL 452 Query: 570 YRDVGNN 576 D Sbjct: 453 AEDPDGE 459 >gi|47934708|gb|AAT39792.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 86.3 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 72/223 (32%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +D A L + E ++ EL+S+ + + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V R + V ++++ Sbjct: 61 SRKQIAERL-QGLGVKFKKKTEKGNVIVDEKVLNSIDLPEAKAVARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + GA TGR + +P S Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG +LV D +G+E R+LA ++ Sbjct: 160 -----FGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDED 197 >gi|2982125|pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A Nucleoside Triphosphate, And Its Processivity Factor Thioredoxin gi|50513551|pdb|1SKR|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE AND DDATP gi|50513555|pdb|1SKS|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The Template gi|50513559|pdb|1SKW|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine Dimer On The Template gi|50513563|pdb|1SL0|A Chain A, Ternary 3' Complex Of T7 Dna Polymerase With A Dna PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine Dimer On The Template And An Incoming Nucleotide gi|50513565|pdb|1SL0|C Chain C, Ternary 3' Complex Of T7 Dna Polymerase With A Dna PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine Dimer On The Template And An Incoming Nucleotide gi|50513571|pdb|1SL1|A Chain A, Binary 5' Complex Of T7 Dna Polymerase With A Dna PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The Template gi|50513575|pdb|1SL2|A Chain A, Ternary 5' Complex Of T7 Dna Polymerase With A Dna PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The Template And An Incoming Nucleotide gi|52695798|pdb|1TK0|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And Ddctp At The Insertion Site gi|52695802|pdb|1TK5|A Chain A, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In The Templating Strand gi|52695806|pdb|1TK8|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And Damp At The Elongation Site gi|52695810|pdb|1TKD|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And Dcmp At The Elongation Site gi|56553842|pdb|1T8E|A Chain A, T7 Dna Polymerase Ternary Complex With Dctp At The Insertion Site. gi|56554410|pdb|1X9M|A Chain A, T7 Dna Polymerase In Complex With An N-2- Acetylaminofluorene-Adducted Dna gi|56554414|pdb|1X9S|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA Containing A Disordered N-2 Aminofluorene On The Template, Crystallized With Dideoxy-Ctp As The Incoming Nucleotide. gi|56554418|pdb|1X9W|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA Containing A Disordered N-2 Aminofluorene On The Template, Crystallized With Dideoxy-Atp As The Incoming Nucleotide Length = 698 Score = 86.3 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 78/691 (11%), Positives = 160/691 (23%), Gaps = 135/691 (19%) Query: 67 TIVAHNS-YFERTVLKACFN------LDIPIHRWICTLVLARSNG--------------- 104 IV HN ++ L +P I TLVL+R Sbjct: 55 LIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGK 114 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 LP AL+A G L + ++ + + E + + N +Y D Sbjct: 115 LPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFN------EEMMDYNVQD 168 Query: 165 VTVTREI-------------------------FKRLEPLSSKEQELWYLDQTINDRGYCV 199 V VT+ + + E +L G+ Sbjct: 169 VVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDIEHRAAWLLAKQERNGFPF 228 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED----LT 255 D L + R++L ++L E TG L T Sbjct: 229 DTKAIEELYVELAARRSELLRKLTETFGSWYQPKGGTEMF---CHPRTGKPLPKYPRIKT 285 Query: 256 ETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 ++ + ++ + + + R + + + +V +S ++ LQ G Sbjct: 286 PKVGGIFKKPKNKAQREGREPCE-LDTREYVAGAPYTPVEHVVFNPSSRDHIQKKLQEAG 344 Query: 313 A-----SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 + G + + + +I + +R Sbjct: 345 WVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDKAWLR-- 402 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV-------TTYARSFNVA 420 +A +GK + G ++ + Sbjct: 403 YVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKP 462 Query: 421 PAQVTKDQRAIGKVMEL-ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 Q D +EL L + + A + + + Sbjct: 463 WVQAGID----ASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTF 518 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 + + + +KK + + ++ L + Q ++ + Sbjct: 519 IYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQ 578 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 K + + GR + R Sbjct: 579 QVKWKRR------------WIKGLDGRKVHVRSPHA---------------------ALN 605 Query: 600 NIVQAVSRDILAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDEFNASML 647 ++Q+ I ++ + G + VHDEI + + Sbjct: 606 TLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQV--V 663 Query: 648 YHLMTSNPSWAKG-----LPLKAEGYESKRY 673 W L EG + Sbjct: 664 IETAQEAMRWVGDHWNFRCLLDTEGKMGPNW 694 >gi|228969098|ref|ZP_04130012.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001] gi|228790587|gb|EEM38274.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001] Length = 388 Score = 85.9 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 53/380 (13%), Positives = 104/380 (27%), Gaps = 70/380 (18%) Query: 11 RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------------PVMPQVL 57 + ID G + + +I GF D+ + L Sbjct: 10 YTFIDTKSTGSNPFKDS--IISITIGFMDNSFFYIPIKPFKHRLSQNISTLSLEYTMKKL 67 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 LE D ++ NS L N DI + + T + A K V E K Sbjct: 68 SPLLE-KDTLLILSNSKQHIHALYNWCNFDITYNIFWDTEIAANLLNENHP-KGVKEWYK 125 Query: 118 --LSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE---------AWRLFGEYCKGDVT 166 + + + +G L K E +H + EY K Sbjct: 126 EYVLPRLISKGTILNTMDSKKYMFEKTLYDQLQHHVATYFACYDIFMLKSVFEYQKRIFE 185 Query: 167 VT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT-LNQIVDVERTKLDQELES 224 + + E L + T +G ++ + QI+ + + +E+ + Sbjct: 186 NPKFNLVHIYKLFREIEMPLIAVLTTAERKGIKINEEFLSNDVKQILQAKLQSVKKEILN 245 Query: 225 LTYGLV-------------------------SSSRCLEKLKTWLFLETGL-----HLEDL 254 + + L L+++ + + Sbjct: 246 HLGSTITLNNCMHPPKQQNKYNSVNKLTSTLFNINSPAHLAQKLYIDNAILKPIMEYDKG 305 Query: 255 TET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM--NSDGRLRG 306 ++ T ++ L N + P + R + N+L + D ++ Sbjct: 306 CKSLISKLKTDRKTLIRNLSMHPVIPLILEYRR-LVKLISSFCNSLPKEQQGTIDNKIHP 364 Query: 307 TLQFLGASRTGRWSGCVFPP 326 +G ++TGR S Sbjct: 365 IYNSVG-TKTGRMSCSSPNL 383 >gi|282554654|ref|YP_003347671.1| DNA polymerase [Klebsiella phage KP34] gi|262410487|gb|ACY66751.1| DNA polymerase [Klebsiella phage KP34] Length = 786 Score = 85.9 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 64/579 (11%), Positives = 142/579 (24%), Gaps = 114/579 (19%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND---RGYC 198 Y + P + + Y DV T + + N + + Sbjct: 273 KYRKKVPYDPPQYVKYDAYLA-DVNGTLQYIDVSDWQPEWTYPRTLYKSGKNKGLPKVFR 331 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 +D L D+ ++ L + + + L+ G + +T Sbjct: 332 LDTE-EKKLKWEDDLYFCPGLVNIQELPEVIREKYAERGEFRQARALQDGTPV----YST 386 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL--------------NTLVEAM---NSD 301 + + + + ++ N + + +++ + N D Sbjct: 387 STDAMEALARQGFEFCRLVNELGALEKDTGTYYLRTEYNEDGSVKKTSGMLQYVIPQNPD 446 Query: 302 G-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 G + A+ TGR SG QNLPR Sbjct: 447 GSGIIHHRLNTCATVTGRLSGSNPNLQNLPRDG--------------------------- 479 Query: 361 SDCVRSCVIASEGK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 + V+ + G+ ++ D + +E + G++ L + G D++ A Sbjct: 480 TSRVKQMFTSRFGESGRITEVDYSALEVVMGCVHTGDRKLLSLLQAGTDMHCYRLAFKEG 539 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 ++ D + K Sbjct: 540 KTYEEMY-DLCHNADGPDY-----------------------------KYWKQQRTDIKP 569 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 +F A + + + + E+T G+ Sbjct: 570 PSFAAQYGATAKGIAFATGCTVEYAQSFLDNEAKLFPDTIGFRAVVKEEVERTGAEGR-- 627 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 R+ + P+G +R + R+ ++ Sbjct: 628 ---LYREQADDGSYRVYRIGTWTSPAGARYSFRQ-KEQWKEVVPEQRKQKVMDYKETEMA 683 Query: 599 ENIVQA-------VSRDILAEGMMNAT--KAGYDIVLTVHDEIVCET--PDTDEFNASML 647 Q V+ ++ ++ ++ VHD + ++ P+ + ++ Sbjct: 684 NYWCQGEAFFLMAVAAGMVLRALLARDWFDNQVCLITNVHDALYLDSANPEVGREASLLV 743 Query: 648 YHLMTSNPS-----W-----AKGLPLKAEGYESKR-YRK 675 M P W +P AE Y K Sbjct: 744 KQCMEDAPKRIHQLWPNYGIIGEVPFPAEAEMGTSMYSK 782 >gi|56752739|gb|AAW24581.1| SJCHGC05886 protein [Schistosoma japonicum] Length = 191 Score = 85.9 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 25/198 (12%), Positives = 62/198 (31%), Gaps = 28/198 (14%) Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 A + + +++ + ++ + + + E + R +P Sbjct: 2 GCHTLASQLNISEKSAQKLIDGFLNIYTGIQKFITTTVSTAHR--EGQIKTLNGHIRLLP 59 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT-RQLTREYTYGGKLTENIVQAVS 606 + K + + S ++ N + R+ +I+Q + Sbjct: 60 ALNSKSIFSCVSANEFS--------CNWSKKQRNHFAVTKAERQA------VNSIIQGSA 105 Query: 607 RDILAEGMMNATKAG--------YDIVLTVHDEIVCET-PDTDEFNASMLYHL-MTSNPS 656 +I M+ +A +VL HDE++ E P++ +L M+S Sbjct: 106 AEIAKLAMLAVDEAISSANIPGYARLVLHEHDELIYEIFPESSVKQFGVLIRQAMSSTGK 165 Query: 657 WAK-GLPLKAEGYESKRY 673 + +PL + + Sbjct: 166 YCNINVPLPVKLKIGPNW 183 >gi|220913904|ref|YP_002489213.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6] gi|219860782|gb|ACL41124.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6] Length = 590 Score = 85.9 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 63/453 (13%), Positives = 106/453 (23%), Gaps = 142/453 (31%) Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 L EL L + ++L L G+ + ++T + L P Sbjct: 232 ARLEALAAELRRLLGSPALNPDSPQELIRALH-RNGIEV----KSTSKWELKDLP--HPV 284 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + + SR + ++A + GR R +G +GRW+ +PR Sbjct: 285 IGPLLEY-KKLSRLHTANGWSWLDAWVAGGRFRPEY-VVGGVVSGRWASRGGGALQIPR- 341 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 VR V A G KL+VAD + +E RVL + Sbjct: 342 ------------------------------QVRGAVHADPGYKLIVADASQLEPRVLVAL 371 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 A + +A + RA KV L Y + Sbjct: 372 ARDSVMAEAARDQDLYAGIAAKGFGG---------DRAKAKVALLGAMYGATSG------ 416 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + A +F +G + + W Q Sbjct: 417 ----------ESGRLMPQLARTYPRAVDFVEQAARAGEAGGTVTTRLGRSSPPPSERWYQ 466 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ E +A + R Sbjct: 467 S-----------QRSA-TAEEQRRAESIARSRGRFTRNF--------------------- 493 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---------------- 616 +VQ + D A + Sbjct: 494 ----------------------------VVQGSAADWAACWLAELRRRLRSLRAHGTGAG 525 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649 AG ++V +HDE++ P Sbjct: 526 PGGAGPELVFFLHDEVMVHAPAGAVDECIRAIE 558 >gi|332800714|emb|CBY88554.1| hypothetical protein [Pantoea phage LIMEzero] Length = 814 Score = 85.9 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 55/449 (12%), Positives = 105/449 (23%), Gaps = 92/449 (20%) Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL--------------NTLVEAMNSDG 302 +T VL + + R +A + + +++ + DG Sbjct: 402 STAGDVLEALAARKIPGVVEIAARAKAQKDLGTYYLIEEEDEEGNVIGQSGMMQFIQPDG 461 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 + ++ + ++ T R S QNLPR + Sbjct: 462 VVHHSIN-MTSTETTRLSSSRPNSQNLPRKG---------------------------TS 493 Query: 363 CVRSCVIASEG--KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 V+ + G K+ AD + +E ++ +A G D++ ++ N Sbjct: 494 KVKQMFTSRFGGEGKICEADYSALEVVGQCGFTKDKNLTQALLDGTDMHCMRLSQQLNED 553 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 V + K + Sbjct: 554 YESV-----------------------------LLKAKKDESHPDHKRYDEMRTAIKPKA 584 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF--EQTIENGKAI 538 F A + + + V + ++E+ N Sbjct: 585 FSYQYGATAMGIAYSTGCSVEEAQAFIDSEKALFPDVEKWYDEVITPIVERNGKSNRFKE 644 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 R V S R D + + Q+ G Sbjct: 645 QDENGRWVSYCRGHWQSPGGTCY--SFRQHEKWDRDARAAVMMYKPTQMRNYPIQGETA- 701 Query: 599 ENIVQAVSRDILAEGMMNAT--KAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNP 655 VQ + +L ++ + VHD + PD L +M P Sbjct: 702 -FWVQGIGG-LLFRWLLANDFFDGKAVPINQVHDAFYFDCAPDCPHEFFVGLKAIMECIP 759 Query: 656 SWA--------KGLPLKAEGYESKR-YRK 675 + +P AE Y K Sbjct: 760 EYYNHVWPEYNLHVPFPAEVEVGPSMYSK 788 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 52/220 (23%), Gaps = 41/220 (18%) Query: 67 TIVAHNSYFERTVLKACFNLDI-----PIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 IVAHN+ +E + + ++ R CT Sbjct: 74 IIVAHNAPYELSWWWCHYQDELIPFLKRGGRIFCTAYAEYLL------------THQQEL 121 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPN--HREAWRLFGEYC---KGDVTVTREIFKRLE 176 + I + + L EY GD+ T +F Sbjct: 122 YPALNEVAIKYGGTHKVDAVKAMWQAGYLTSQIDQELLSEYLSGPSGDIANTMRVFTGQW 181 Query: 177 PLSSKEQELWYLDQTIN---------DRGYCVDVALAHTLNQIVDVERTKLDQEL----- 222 K+ L + G VD +A Q + + +L EL Sbjct: 182 AALQKQGMLKMALTRMEGMLMWTYMMYSGLYVDRDVAEQNRQELVKDIDRLTDELRGYLP 241 Query: 223 --ESLTYGLVSSSRCLEKLKTWLF---LETGLHLEDLTET 257 + ++F ++ +E Sbjct: 242 ADMPQAAREQFKFSSAYHMSAFVFGGVMKYKDKVERTDAD 281 >gi|83753886|pdb|1ZYQ|A Chain A, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp Length = 698 Score = 85.9 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 78/691 (11%), Positives = 159/691 (23%), Gaps = 135/691 (19%) Query: 67 TIVAHNS-YFERTVLKACFN------LDIPIHRWICTLVLARSNG--------------- 104 IV HN ++ L +P I TLVL+R Sbjct: 55 LIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGK 114 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 LP AL+A G L + ++ + + E + + N +Y D Sbjct: 115 LPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFN------EEMMDYNVQD 168 Query: 165 VTVTREI-------------------------FKRLEPLSSKEQELWYLDQTINDRGYCV 199 V VT+ + + E +L G+ Sbjct: 169 VVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDIEHRAAWLLAKQERNGFPF 228 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED----LT 255 D L + R++L ++L E TG L T Sbjct: 229 DTKAIEELYVELAARRSELLRKLTETFGSWYQPKGGTEMF---CHPRTGKPLPKYPRIKT 285 Query: 256 ETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 ++ + ++ + + + R + + + +V +S ++ LQ G Sbjct: 286 PKVGGIFKKPKNKAQREGREPCE-LDTREYVAGAPYTPVEHVVFNPSSRDHIQKKLQEAG 344 Query: 313 A-----SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 + G + + + +I + +R Sbjct: 345 WVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDKAWLR-- 402 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV-------TTYARSFNVA 420 +A +GK + G ++ + Sbjct: 403 YVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKP 462 Query: 421 PAQVTKDQRAIGKVMEL-ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 Q D +EL L + + A + + + Sbjct: 463 WVQAGID----ASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTF 518 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 + + +KK + + ++ L + Q ++ + Sbjct: 519 IYGFLYGAGDEAIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQ 578 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 K + + GR + R Sbjct: 579 QVKWKRR------------WIKGLDGRKVHVRSPHA---------------------ALN 605 Query: 600 NIVQAVSRDILAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDEFNASML 647 ++Q+ I ++ + G + VHDEI + + Sbjct: 606 TLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQV--V 663 Query: 648 YHLMTSNPSWAKG-----LPLKAEGYESKRY 673 W L EG + Sbjct: 664 IETAQEAMRWVGDHWNFRCLLDTEGKMGPNW 694 >gi|156101137|ref|XP_001616262.1| DNA polymerase 1 [Plasmodium vivax SaI-1] gi|148805136|gb|EDL46535.1| DNA polymerase 1, putative [Plasmodium vivax] Length = 1221 Score = 85.6 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 45/383 (11%), Positives = 100/383 (26%), Gaps = 86/383 (22%) Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRP--- 332 + + + L + + + ++ +GA TGR S QN+ Sbjct: 795 VKLYRESKKLFQNYIENLPKFIQKETNKIHCNFNQIGA-STGRLSCEQPNLQNIHSRFRC 853 Query: 333 --------------------SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + ++ + + + + + + Sbjct: 854 AVSLKGGEVGGEERGSGERGIANQCSANRGSVEVGGNNLTTAENPPPANFTCEGA--PPD 911 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G+ L+ D +E V+A+++ + LK ++G+ T QVT + R + Sbjct: 912 GENLITFDYKQMELFVMAYLSFDVQLLKMLQSGDVFVETAKVLFNTT---QVTSELRRMT 968 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y L ++ ++ + + + F + + Sbjct: 969 KTVIYGILYGQTENGL-----AKSLLISEGMASNLISNFFQVFPNVYRFMQMQKILLKHM 1023 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 IG +RV + + + I I + + Sbjct: 1024 NRVYTLIGR--KRVIE------PTIKN---------KYRISMNTPIQGCAADVMKFALLS 1066 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 S R L +V N + T Sbjct: 1067 CFCIMTHGWPQSARLLKINNVSAAVLEENKPFLKAT------------------------ 1102 Query: 613 GMMNATKAGYDIVLTVHDEIVCE 635 ++L VHDE++ E Sbjct: 1103 ----------KLILQVHDELLFE 1115 >gi|258655373|ref|YP_003204529.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233] gi|258558598|gb|ACV81540.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233] Length = 550 Score = 85.6 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 61/441 (13%), Positives = 104/441 (23%), Gaps = 130/441 (29%) Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 L E+ V+ ++ F G +E + + P Sbjct: 202 LAALADEISQAFGFPVNPDSAVDVRAA--FRRVGFDIESTRSWVIKAI------DHPAVR 253 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 V R +E R GA +GRW+ +PR Sbjct: 254 PVLAY-KELVRLHTANGWAWLEQWVRGNRFHAEY-LSGAVVSGRWATRGGGALQIPR--- 308 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R V+A G +L+VAD A +E RVLA ++ Sbjct: 309 ----------------------------VLRQAVVADPGYRLIVADAAQLEPRVLAAISA 340 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + + G A + + Sbjct: 341 DLVLQAISA-----------------------EDDLYAGLAADGFGGNRAAAKVAMLGAM 377 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G R+ R ++ Sbjct: 378 YGQ-----------------------------------------TTGEGGRLVSTLRARY 396 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + E G+ + + R P P G S +G Sbjct: 397 PQAMGY----VDGAARAGERGEVVHSVLGRACP---------------PPGTSWEAVRIG 437 Query: 575 NNRSYLNTTTRQLTREYTYGGKLT-ENIVQAVSRDILAEGMMNA-----TKAGYDIVLTV 628 + R G+ T +VQA + D A + AG ++V Sbjct: 438 RQQDATPAERTLADRLAGDRGRFTRNFVVQASAADWAAVWLAGLRTSLTEVAGAELVFFQ 497 Query: 629 HDEIVCETPDTDEFNASMLYH 649 HDE++ P+ + L Sbjct: 498 HDELIVHAPEPVAEPVAGLIE 518 >gi|47934720|gb|AAT39798.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 85.6 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 74/223 (33%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +DV A L + E ++ EL+S+ V + Sbjct: 1 ERNGFKLDVPYAEKLMMDLTFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V + + R + V ++++ Sbjct: 61 SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + GA TGR + +P S Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG LV D +G+E R+LA ++ Sbjct: 160 -----FGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDED 197 >gi|47934704|gb|AAT39790.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934706|gb|AAT39791.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934746|gb|AAT39811.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 85.6 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 72/223 (32%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +D A L + E ++ EL+S+ + + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V R + V ++++ Sbjct: 61 SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDSIDLPEAKAVARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + GA TGR + +P S Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG +LV D +G+E R+LA ++ Sbjct: 160 -----FGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDED 197 >gi|326424982|ref|YP_004286204.1| putative DNA polymerase [Pseudomonas phage phi15] gi|325048386|emb|CBZ41999.1| putative DNA polymerase [Pseudomonas phage phi15] Length = 722 Score = 85.6 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 83/741 (11%), Positives = 185/741 (24%), Gaps = 162/741 (21%) Query: 44 LWDCVHDPVMPQVLKEALE----NTDVTIVAHN-SYFERTVLKA------CFNLDIPIHR 92 +++ + +K ALE D IV HN ++ L NL+IP + Sbjct: 31 VFEGYRPDNVLDYIK-ALEAEAAKPDGLIVFHNGIKYDIPALAKIKKSLTGKNLNIPRQK 89 Query: 93 WICTLVLARSNGL---------------------PSALKAVGEALK--LSSQKMEEGKEL 129 + TLVL+R +L+A G L K + ++L Sbjct: 90 VLDTLVLSRLLHANLKNTDAGLLRKGILPGDRYGSHSLEAWGYRLGEMKGEYKDDFKRDL 149 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE------- 182 AR N+P + YC+ DV VT ++ ++ Sbjct: 150 AARGETYVDGMEWEHFNEPMYD--------YCEQDVRVTLKLLRKFLADKFYFGSDVAPN 201 Query: 183 --------------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E + + G+ + A L Q + ER+ L +L Sbjct: 202 GEQWMGGIRAVRLEHEAAWTLAQMERNGFPFNKQKAERLYQELAAERSDLLVKLIETFGT 261 Query: 229 LVSSSRCLEKLKTWLFLETG-----LHLEDLTET--------TCQRVLSSNKKLTPQAIQ 275 + + +L +TG + ++ ++ K+ +P Sbjct: 262 ---WWAPTKGTEPFLHPKTGKVLSKYPMVKRAKSGNADGHCGKTKKNPKGVKEKSPYVAG 318 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + + + + + + G GA + + P + Sbjct: 319 CIYTPIEHITFSPTSRDHIQKVLKDAGWEPTEFTDKGAPIVDDETLEGVTVDD-PVKQAA 377 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + + + + C +G + G Sbjct: 378 ITLIQRYLMIQKRIGQLAEGKKAWLLYC-----ETEDGFIHGSINPNGAGTGRATHSHPN 432 Query: 396 QWKLKAFETGEDLYVTT---YARSFNVAPAQVTKDQRAIGKVME------LALGYQGGA- 445 ++ + ++ A + ++ + +E + GGA Sbjct: 433 MGQVPSAKSPYGPECRELFGAAYASHLPGWEAVVQVGRDASGLELRCLGHFGAKFDGGAY 492 Query: 446 -----KAFQKMASTTGLNLNTFAHLVKTNSAPEEW---EDAENFCRWMQENHPEHAIEDL 497 A+ + +K + + W + + + Sbjct: 493 VEQVLNGDVHWANAVAAGIAKDPVRIKGDEQHDRWRDNAKTFIYAFLYGAGNGKIGQIVG 552 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + +KK++ + + L + L +A + Sbjct: 553 GGESHGKALKKSFLENTPVIKSLSDSLIEALVAEQKWNNVTK----------RFDLKWKR 602 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN- 616 + GR + R + ++Q I ++ Sbjct: 603 KWIKGLDGRMVHIRSPHS---------------------ALNFLLQGAGAVICKAWVVET 641 Query: 617 --------ATKAGYD---------IVLTVHDEIVCETPDTDEFNA------SMLYHLMTS 653 Y + VHDE+ + + + ++ Sbjct: 642 ERLLMEQGLHHGWYREDGTPGDFCFMAWVHDELQIAARNPEIAEVVHAACQQAIRNI--- 698 Query: 654 NPSWAKGLPLKAEGYESKRYR 674 + L EG+ +R Sbjct: 699 GEEFGIRCQLDTEGHTGPTWR 719 >gi|119637765|ref|YP_919001.1| DNA polymerase [Yersinia phage Berlin] gi|119391796|emb|CAJ70669.1| hypothetical protein [Yersinia phage Berlin] Length = 704 Score = 85.6 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 59/477 (12%), Positives = 108/477 (22%), Gaps = 136/477 (28%) Query: 227 YGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +V + + + L + VL K P A + Sbjct: 330 EHVVFNPSSRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEY 389 Query: 284 SRSAV------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-PSRSH 336 N + + DGR+ G++ GA TGR + +P + Sbjct: 390 LMIQKRVGQVAEGDNGWLRMIGEDGRIHGSVNPNGA-VTGRATHSFPNVAQVPSIRAAYG 448 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 E PDP V D +G+E R L Sbjct: 449 EPCRAAFGAEHNMKDGKPDP-----------------WIQVGVDASGLELRCLGHFMYRY 491 Query: 397 WKLKAFETGEDLYVTTYARS-FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + ET + T + + K Y GA Sbjct: 492 DEGEYVETILTGDIHTKNQMAAGLPTRDN-------AKTFIYGFLYGAGAAKI------- 537 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 +R+ K + ++ Sbjct: 538 -------------------------------------GQIVGGTSEDGKRLIKNFLEQTP 560 Query: 516 RVSELWNELHQAFEQTIE--NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ L + A + + G+ + KRR V + GR + R Sbjct: 561 AIAALREAITGALVKDSKWVGGEQKVTWKRRWVRGL--------------DGRKVHVRSP 606 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYD------ 623 ++Q+ I ++ + GY Sbjct: 607 HA---------------------ALNTLLQSAGALICKLWIVKTEEMLLEMGYKHGWDGD 645 Query: 624 --IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673 ++ +HDE + A ++ + W L EG + Sbjct: 646 FCLMGWIHDEQQLACRTEEI--AKVVIEVSQQAMRWVGDHFNFRCQLDTEGKMGPNW 700 >gi|47934698|gb|AAT39787.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 49/230 (21%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +D L H L +++ +L++L V + Sbjct: 1 ERNGWLLDQRLCHILCAKFKERMNEIESDLQALFPPIVEERYSEKTGKRLKDKVTVFNVG 60 Query: 235 CLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 +++ L + + ++ L N + P+A QV + + ++ Sbjct: 61 SRQQVAERLSAKGAVWTELTPTGKPMVDEKTLKENSHV-PEAAQVLEY-LLLQKRY-AQV 117 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 N+ +E + DGR+ G + GA TGR + +P Sbjct: 118 NSWLEHVQDDGRVHGRVTTNGA-VTGRMTHQNPNMAQVPS-------------------- 156 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + R+C I EG+KLV D +G+E R+LA G++ Sbjct: 157 ----VNSEYGEDCRNCWIVPEGRKLVGVDASGLELRMLAHYMGDEEFTNV 202 >gi|47934744|gb|AAT39810.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 72/223 (32%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +D A L + E ++ EL+S+ + + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V R + V ++++ Sbjct: 61 SRKQIAERL-QGLGVKFKKKTEKGNIIVDEKVLNSIDLPEAKAVARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + GA TGR + +P S Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG +LV D +G+E R+LA ++ Sbjct: 160 -----FGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDED 197 >gi|47934618|gb|AAT39747.1| DNA polymerase [Uncultured T7-like podovirus] Length = 201 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 71/223 (31%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +D A L + E ++ EL+S+ + + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V R + V ++++ Sbjct: 61 SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKXIARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + GA TGR + +P S Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG LV D +G+E R+LA ++ Sbjct: 160 -----FGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDED 197 >gi|47934724|gb|AAT39800.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 85.2 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 74/223 (33%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +DV A L + E ++ EL+S+ V + Sbjct: 1 ERNGFKLDVPYAEQLMMDLMFEMNSIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V + + R + V ++++ Sbjct: 61 SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + GA TGR + +P S Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG LV D +G+E R+LA ++ Sbjct: 160 -----FGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDED 197 >gi|37956824|gb|AAP34091.1| gene 5 [Enterobacteria phage T7] Length = 704 Score = 85.2 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 76/697 (10%), Positives = 159/697 (22%), Gaps = 141/697 (20%) Query: 67 TIVAHNS-YFERTVLKACFN------LDIPIHRWICTLVLARSNGL-------------- 105 IV HN ++ L +P I TLVL+R Sbjct: 55 LIVFHNGHKYDVPALIKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKNIDMGLLRSGK 114 Query: 106 -------PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 AL+A G L + ++ + + E + + N Sbjct: 115 LPGKRFGSHALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFN------EEMM 168 Query: 159 EYCKGDVTVTREI-------------------------FKRLEPLSSKEQELWYLDQTIN 193 +Y DV VT+ + + E +L Sbjct: 169 DYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDIEHRAAWLLAKQE 228 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G+ D L + R++L ++L E TG L Sbjct: 229 RNGFPFDTKAIEELYVELASRRSELLRKLTETFGSWYQPKGGTEMF---CHPRTGKPLPK 285 Query: 254 ----LTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T ++ + ++ + + + R + + + +V +S ++ Sbjct: 286 YPRIKTPKVGGIFKKPKNKAQREGREPCE-LDTREYVAGAPYTPVEHVVFNPSSRDHIQK 344 Query: 307 TLQFLGA-----SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 LQ G + G + + + +I + Sbjct: 345 KLQETGWIPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDK 404 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV-------TTYA 414 +R +A +GK + G ++ + Sbjct: 405 AWLR--YVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLD 462 Query: 415 RSFNVAPAQVTKDQRAIGKVMEL-ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 Q D +EL L + + A + + Sbjct: 463 GITGKPWVQAGID----ASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTR 518 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + +KK + + ++ L + Q ++ + Sbjct: 519 DNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQ 578 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 K + + GR + R Sbjct: 579 WVAGEQQVKWKRR------------WIKGLDGRKVHVRSPHA------------------ 608 Query: 594 GGKLTENIVQAVSRDILAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDE 641 ++Q+ I ++ + G + VHDEI + Sbjct: 609 ---ALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEI 665 Query: 642 FNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673 + + W L EG + Sbjct: 666 AQV--VIEIAQEAMRWVGDHWNFRCLLDTEGKMGPNW 700 >gi|47934788|gb|AAT39832.1| DNA polymerase [Uncultured T7-like podovirus] Length = 202 Score = 85.2 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 71/223 (31%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +D A L + E ++ EL+S+ + + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V R + V ++++ Sbjct: 61 SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + GA TGR + +P S Sbjct: 120 LKAVXDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG LV D +G+E R+LA ++ Sbjct: 160 -----FGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDED 197 >gi|47934756|gb|AAT39816.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 84.8 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 71/223 (31%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +D A L + E ++ EL+S+ + + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEETGKRLKDKVTIFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V R + V ++++ Sbjct: 61 SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + GA TGR + +P S Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG LV D +G+E R+LA ++ Sbjct: 160 -----FGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDED 197 >gi|194100384|ref|YP_002003958.1| gp5 [Enterobacteria phage 13a] gi|193201431|gb|ACF15908.1| gp5 [Enterobacteria phage 13a] Length = 704 Score = 84.8 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 81/730 (11%), Positives = 165/730 (22%), Gaps = 146/730 (20%) Query: 37 FDDHPVELWDCVHDPVMPQVLKEALENT---DVTIVAHNS-YFERTVLKACFN------L 86 +D E +ALE IV HN ++ L Sbjct: 24 YDYSTAEYVSYRPGDF--GAYLDALEAEVARGGLIVFHNGHKYDVPALTKLAKLQLNREF 81 Query: 87 DIPIHRWICTLVLARSNGL---------------------PSALKAVGEALKLSSQKMEE 125 +P I TLVL+R AL+A G L + ++ Sbjct: 82 HLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGKRFGSHALEAWGYRLGEMKGEYKD 141 Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-------------- 171 + + E + + N +Y DV VT+ + Sbjct: 142 DFKRMLEEQGEEYVDGMEWWNFN------EEMMDYNVQDVVVTKALLEKLLSDKHYFPPE 195 Query: 172 -----------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + E +L G+ D L + R++L + Sbjct: 196 IDFTDVGYTTFWSESLEAVDVEHRAAWLLAKQERNGFPFDTKAIEELYVELAARRSELLR 255 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLED----LTETTC---QRVLSSNKKLTPQA 273 +L E TG L T ++ + ++ + Sbjct: 256 KLTETFGSWYQPKGGTEMF---CHPRTGKPLPKYPRIKTPKVGGIFKKPKNKAQREGREP 312 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-----SRTGRWSGCVFPPQN 328 + + R + + + +V +S ++ LQ G + G + Sbjct: 313 CE-LDTREYVAGAPYTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEG 371 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 + + +I + +R +A +GK + G Sbjct: 372 VRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDKAWLR--YVAEDGKIHGSVNPNGAVTGR 429 Query: 389 LAWMAGEQWKLKAFETGEDLYV-------TTYARSFNVAPAQVTKDQRAIGKVMEL-ALG 440 ++ + Q D +EL L Sbjct: 430 ATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGID----ASGLELRCLA 485 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 + + A + + + + + Sbjct: 486 HFMARFDNGEYAHEILNGDIHTKNQMAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGK 545 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + +KK + + ++ L + Q ++ + K + + Sbjct: 546 ERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRR------------WI 593 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---- 616 GR + R ++Q+ I ++ Sbjct: 594 KGLDGRKVHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEM 632 Query: 617 ATKAGYDI--------VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPL 663 + G + VHDEI + + W L Sbjct: 633 LVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQV--VIETAQEAMRWVGDHWNFRCLL 690 Query: 664 KAEGYESKRY 673 EG + Sbjct: 691 DTEGKMGPNW 700 >gi|47934748|gb|AAT39812.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934754|gb|AAT39815.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934758|gb|AAT39817.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934760|gb|AAT39818.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934800|gb|AAT39838.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 84.8 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 71/223 (31%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +D A L + E ++ EL+S+ + + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V R + V ++++ Sbjct: 61 SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + GA TGR + +P S Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG LV D +G+E R+LA ++ Sbjct: 160 -----FGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDED 197 >gi|47934688|gb|AAT39782.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 84.8 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 43/225 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +DV A L+ + ++ E++ + + Sbjct: 1 ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEIFPPIVEERWSEKTGKQLKDKVTEFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 ++ L E G + TET +V + + + V +++ Sbjct: 61 SRLQIGDRL-QELGWKPKQFTETGKAKVDETILESIDLPEAQLIAEYLMIQKRVGLIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ ++ + TGR + +P Sbjct: 120 LKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP------------------------ 155 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + RS +G +L+ DL+GIE R LA + Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQ 200 >gi|32141203|ref|NP_733604.1| DNA polymerase I [Streptomyces coelicolor A3(2)] gi|24413788|emb|CAD55317.1| putative DNA polymerase I [Streptomyces coelicolor A3(2)] Length = 563 Score = 84.8 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 72/501 (14%), Positives = 127/501 (25%), Gaps = 152/501 (30%) Query: 186 WYLDQTINDRGYC----VDVALAHTLNQI------VDVERTKLDQELESLTYGLVSSSRC 235 + +N G V + H L +L +E+ + V Sbjct: 167 MLVAAEMNRAGLPWRADVHREVLHDLLGERYAGGGEPRRLAELAEEVSAAFGRRV-RPDL 225 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + F + G+ + + + P + + R V + + Sbjct: 226 PADVVK-AFGQAGVKVGSTRRWELESL------DHPAVKPLIEY-KKLYRIWVAHGWSWL 277 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + DGR R G + TGRW +P+ Sbjct: 278 QDWVRDGRFRPEF-LAGGTVTGRWVTNGGGGLQIPK------------------------ 312 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R V+A G +LVVAD +E RVLA ++ + ++ DLY + R Sbjct: 313 -------VIRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRETDLYQSVSDR 365 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 +F+ K+ L Y T+G L A L Sbjct: 366 AFSGDRD--------QAKLAVLGAVY----------GQTSGDGLKNLAAL---------- 397 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 R++ R ++ + E G Sbjct: 398 -----------------------------------RRRFPRAVAYVDD----AARAGEEG 418 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 + + R P D G +R+ T G Sbjct: 419 RLVRTWLGRTCPPAAGAADGTEEA-----GLPQDEPAGAGDRAQEWVPGYASTNARARGR 473 Query: 596 KLTENIVQA---------------VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 +VQ D+ ++V HDE++ P+ + Sbjct: 474 FARNFVVQGSAADWALLLLAALRQTCADMA-----------AELVFFQHDEVIVHCPEEE 522 Query: 641 EFNASMLYHLMTSNPSWAKGL 661 A+ + + A L Sbjct: 523 ---AATVVAAIRDAAELAGRL 540 >gi|47934786|gb|AAT39831.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 84.8 bits (208), Expect = 5e-14, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 71/223 (31%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +D A L + E ++ EL+S+ + + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V R + V ++++ Sbjct: 61 SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + GA TGR + +P S Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG LV D +G+E R+LA ++ Sbjct: 160 -----FGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDED 197 >gi|47934722|gb|AAT39799.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 84.8 bits (208), Expect = 5e-14, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 73/223 (32%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +DV A L + E ++ EL+S+ V + Sbjct: 1 ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V + + R + V ++++ Sbjct: 61 SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + GA TGR + +P Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVP------------------------ 154 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG LV D +G+E R+LA ++ Sbjct: 155 AVPAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDED 197 >gi|47934716|gb|AAT39796.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 84.8 bits (208), Expect = 5e-14, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 74/223 (33%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +DV A L + E ++ EL+S+ V + Sbjct: 1 ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V + + R + V ++++ Sbjct: 61 SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + GA TGR + +P S Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG LV D +G+E R+LA ++ Sbjct: 160 -----FGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDED 197 >gi|291438121|ref|ZP_06577511.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] gi|291341016|gb|EFE67972.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] Length = 563 Score = 84.4 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 55/423 (13%), Positives = 104/423 (24%), Gaps = 126/423 (29%) Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 F + G+ + + V P + + R V + ++ DGR Sbjct: 219 FAQAGVKVSSTRRWEIESV------DHPAVKPLLEY-KKLYRIWVAHGWSWLQDWVRDGR 271 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 R G + +GRW +P+ Sbjct: 272 FRPEFH-AGGTVSGRWVSHGGGALQIPK-------------------------------V 299 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G +LVVAD +E RVLA ++ + ++ DLY + R F+ Sbjct: 300 IRRATVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRETDLYQSVSDRVFSGDRD- 358 Query: 424 VTKDQRAIGKVMELALGYQGGAK-AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 K+ L Y + + +A+ + A + Sbjct: 359 -------RAKLAVLGAVYGQTSGDGLKNLAAL-----------------RRRFPRAVAYV 394 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 E + ++G C + A E+ G + Sbjct: 395 DEAARAGEEGRLVRTWLGRTCPPAART--------------TDDAVEEA---GIPVAGGS 437 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 + R ++ R G +V Sbjct: 438 GTSGGSGASGDSGE---------------EAEGGRPWVPGHASADARAR--GRFARNFVV 480 Query: 603 QAV---------------SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE-FNASM 646 Q D ++V HDE++ P+ + + Sbjct: 481 QGSAADWALLLLAALRRALSD-----------RAAELVFFQHDEVIVHCPEEEARDVVAA 529 Query: 647 LYH 649 + Sbjct: 530 IRE 532 >gi|239929792|ref|ZP_04686745.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] Length = 577 Score = 84.4 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 55/423 (13%), Positives = 104/423 (24%), Gaps = 126/423 (29%) Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 F + G+ + + V P + + R V + ++ DGR Sbjct: 233 FAQAGVKVSSTRRWEIESV------DHPAVKPLLEY-KKLYRIWVAHGWSWLQDWVRDGR 285 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 R G + +GRW +P+ Sbjct: 286 FRPEFH-AGGTVSGRWVSHGGGALQIPK-------------------------------V 313 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G +LVVAD +E RVLA ++ + ++ DLY + R F+ Sbjct: 314 IRRATVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRETDLYQSVSDRVFSGDRD- 372 Query: 424 VTKDQRAIGKVMELALGYQGGAK-AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 K+ L Y + + +A+ + A + Sbjct: 373 -------RAKLAVLGAVYGQTSGDGLKNLAAL-----------------RRRFPRAVAYV 408 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 E + ++G C + A E+ G + Sbjct: 409 DEAARAGEEGRLVRTWLGRTCPPAART--------------TDDAVEEA---GIPVAGGS 451 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 + R ++ R G +V Sbjct: 452 GTSGGSGASGDSGE---------------EAEGGRPWVPGHASADARAR--GRFARNFVV 494 Query: 603 QAV---------------SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE-FNASM 646 Q D ++V HDE++ P+ + + Sbjct: 495 QGSAADWALLLLAALRRALSD-----------RAAELVFFQHDEVIVHCPEEEARDVVAA 543 Query: 647 LYH 649 + Sbjct: 544 IRE 546 >gi|312436366|gb|ADQ83175.1| DNA polymerase [Yersinia phage Yep-phi] Length = 704 Score = 84.4 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 56/475 (11%), Positives = 103/475 (21%), Gaps = 132/475 (27%) Query: 227 YGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +V + + + L + VL K P A + Sbjct: 330 EHVVFNPSSRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEY 389 Query: 284 SRSAV------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-PSRSH 336 N + + DGR+ G++ GA TGR + +P + Sbjct: 390 LMIQKRIGQVAEGDNGWLRMIGEDGRIHGSVNPNGA-VTGRATHSFPNVAQVPSIRAAYG 448 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 E PDP V D +G+E R L Sbjct: 449 EPCRAAFGAEHNLKDGKPDP-----------------WIQVGVDASGLELRCLGHFMYRY 491 Query: 397 WKLKAFETGEDLYVTTYARS-FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + ET + T + + K Y GA Sbjct: 492 DEGEYVETILTGDIHTKNQMAAGLPTRDN-------AKTFIYGFLYGAGAAKI------- 537 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 +R+ K + ++ Sbjct: 538 -------------------------------------GQIVGGTAEDGKRLIKNFLEQTP 560 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + A + I ++ V K+ + GR + R Sbjct: 561 AI--------AALREAITGTLVKDSKWVGGEQKVTWKRR----WVRGLDGRKVHVRSPHA 608 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYD-------- 623 ++Q+ I ++ + GY Sbjct: 609 ---------------------ALNTLLQSAGALICKLWIVKTEEMLLEMGYKHGWDGDFC 647 Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673 ++ +HDE + A ++ + W L EG + Sbjct: 648 LMGWIHDEQQLACRTEEI--AKVVIEVSQQAMHWVGDHFNFRCQLDTEGKMGPNW 700 >gi|47934718|gb|AAT39797.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 84.4 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 73/223 (32%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G +DV A L + E ++ EL+S+ V + Sbjct: 1 ERNGSKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V + + R + V ++++ Sbjct: 61 SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + GA TGR + +P S Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG LV D +G+E R+LA ++ Sbjct: 160 -----FGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDED 197 >gi|291335495|gb|ADD95107.1| 5B protein [uncultured phage MedDCM-OCT-S04-C348] Length = 429 Score = 84.4 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 71/281 (25%), Gaps = 39/281 (13%) Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETT----CQRVLSSNKKLTPQAIQVFNNRMRAS 284 V + +++ L + G E T+ VL P+A + + Sbjct: 49 EVFNPGSRQQIVDRLKKKYGWVPESKTDKGNPVLNDDVLEKLP--YPEAKPLAEYMLLKK 106 Query: 285 RS--AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 R N ++ ++ DG + G + G TGR S +P Sbjct: 107 RLGQIKDGNNAWIKLVSPDGYIHGDMVTNGC-ITGRCSHRNPNTAQIPAGYSP------- 158 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 RS A + L+ +D +E R LA Sbjct: 159 -----------------YGKECRSLFHAPDDWILIGSDAKALELRCLAGYLAFWD----G 197 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + + + R I K + A+ Y G + + + Sbjct: 198 GEYGQMVTDDSVDIHTYNQEKFGVETRDISKRLLYAVLYGAGFYKAGTIVDPDEKDPDIL 257 Query: 463 AHLVK--TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 L K NS + + EN Sbjct: 258 KQLGKTAINSFMTGVPALQELKNKLAENLVARGYLLGLDRR 298 >gi|47934762|gb|AAT39819.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 84.4 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 70/221 (31%), Gaps = 44/221 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +D A L + E ++ EL+S+ + + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V R + V ++++ Sbjct: 61 SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + GA TGR + +P S Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 RSC EG LV D +G+E R+LA + Sbjct: 160 -----FGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDD 195 >gi|47934684|gb|AAT39780.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 84.0 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 43/225 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +DV A L+ + ++ E++ + + Sbjct: 1 ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 ++ L E G + TET +V + + + V +++ Sbjct: 61 SRLQIGDRL-QELGWKPKQFTETGKAKVDETILEAIDLPEAQLIAEYLMIQKRVGLIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ ++ + TGR + +P Sbjct: 120 LKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP------------------------ 155 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + RS +G +L+ DL+GIE R LA + Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHHMQDPEWQ 200 >gi|229073437|ref|ZP_04206573.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus cereus F65185] gi|228709744|gb|EEL61782.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus cereus F65185] Length = 464 Score = 84.0 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 53/380 (13%), Positives = 103/380 (27%), Gaps = 70/380 (18%) Query: 11 RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------------PVMPQVL 57 + ID G + + +I GF D+ + L Sbjct: 86 YTFIDTKSTGSNPFKDS--IISITIGFMDNSFFYIPIKPFKHRLSQNTSTLSLEYTMKKL 143 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 LE D ++ NS L N DI + + T + A K V E K Sbjct: 144 SPLLE-KDTLLILSNSKQHIHALYNWCNFDITYNIFWDTEIAANLLNENHP-KGVKEWYK 201 Query: 118 --LSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE---------AWRLFGEYCKGDVT 166 + + + +G L K E +H + EY K Sbjct: 202 EYVLPRLISKGTILNTMDSKKYMFEKTLYDQLQHHVATYFACYDIFMLKSVFEYQKRIFE 261 Query: 167 VT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT-LNQIVDVERTKLDQELES 224 + + E L + T +G + + QI+ + + +E+ + Sbjct: 262 NPKFNLVHIYKLFREIEMPLIAVLTTAERKGIKISEEFLSNDVKQILQAKLQSVKKEILN 321 Query: 225 LTYGLV-------------------------SSSRCLEKLKTWLFLETGL-----HLEDL 254 + + L L+++ + + Sbjct: 322 HLGSTITLNNCMHPPKQQNKYNSVNKLTSTLFNINSPAHLAQKLYIDNAILKPIMEYDKG 381 Query: 255 TET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM--NSDGRLRG 306 ++ T ++ L N + P + R + N+L + D ++ Sbjct: 382 CKSLISKLKTDRKTLIRNLSMHPVIPLILEYRR-LVKLISSFCNSLPKEQQGTIDNKIHP 440 Query: 307 TLQFLGASRTGRWSGCVFPP 326 +G ++TGR S Sbjct: 441 IYNSVG-TKTGRMSCSSPNL 459 >gi|47934690|gb|AAT39783.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934692|gb|AAT39784.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934700|gb|AAT39788.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934702|gb|AAT39789.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 84.0 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 43/225 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +DV A L+ + ++ E++ + + Sbjct: 1 ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 ++ L E G + TET +V + + + V +++ Sbjct: 61 SRLQIGDRL-QELGWKPKQFTETGKAKVDETILESIDLPEAQLIAEYLMIQKRVGLIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ ++ + TGR + +P Sbjct: 120 LKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP------------------------ 155 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + RS +G +L+ DL+GIE R LA + Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQ 200 >gi|47934660|gb|AAT39768.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 84.0 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 64/228 (28%), Gaps = 49/228 (21%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +D+ L + ++ E++++ V + Sbjct: 1 ERNGFKLDIDACELLRAKLSDRMGIIEDEVQAVFPPIVEERWSEKTGKRLKDKITVFNLA 60 Query: 235 CLEKLKTWLFLETGLHLE---DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 +++ L + + L ++ + + V + Sbjct: 61 SRKQIAERLMGLGWTPTKHTEKGQPIVDEGTLEDIDIPQ---AKLIAEYLMLQK-RVGMI 116 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 ++ ++ ++ + TGR + +P ++ Sbjct: 117 DSWLKHVDKTTHRVHGGVITQGTITGRMAHRNPNLGQVPSVTKP---------------- 160 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + +RS EG LV +DL+G+E R L+ ++ Sbjct: 161 --------YGEEIRSLWTVDEGNVLVGSDLSGVELRCLSHYMQDEEWQ 200 >gi|154334068|ref|XP_001563289.1| mitochondrial DNA polymerase I protein D [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060301|emb|CAM45712.1| putative mitochondrial DNA polymerase I protein D [Leishmania braziliensis MHOM/BR/75/M2904] Length = 1578 Score = 84.0 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 47/412 (11%), Positives = 97/412 (23%), Gaps = 88/412 (21%) Query: 260 QRVLSSNKKLTPQ-AIQVFNNRMRASRSAVLKLNT------LVEAMNSDGRLRGTLQFLG 312 + LS K + + + +V ++S Sbjct: 1193 EDSLSYFKSNHDDKTASIILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHN 1252 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR + QN+P+ +S +R I+ Sbjct: 1253 KTNTGRLASANPNCQNIPKEDKS---------------------------SLRDMFISRF 1285 Query: 373 GKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 G K + AD + +E LA +A ++ L+ D + P D Sbjct: 1286 GDKGMCIEADYSQLEVVALAVLASDEQMLEDLRQNVDFHCKRVTMMR---PDLKYTDVLQ 1342 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + +F R Sbjct: 1343 RAKKN-----------------------------KELEFVKLRQQAKIFSFQRQYGAGVR 1373 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + + + + + V ++ + + A + R+V Sbjct: 1374 MLSQSTGLTQDQVRMLIEKENETYRGVEVF----NKMVALSANSYDASLQNGVRNVRGHQ 1429 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 K + +G V+ + L L VQ + +I+ Sbjct: 1430 FFKGMFPV----LTGSRYVFTESDVPEGMLRERDAVRKSTNFSPTHLKNYPVQGFAGEIV 1485 Query: 611 AEGMMNA----------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LM 651 + M+ + TVHD + + + + +M Sbjct: 1486 -QVMLGVLWRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1536 Score = 77.1 bits (188), Expect = 8e-12, Method: Composition-based stats. Identities = 56/417 (13%), Positives = 112/417 (26%), Gaps = 95/417 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----LWD----------- 46 L +D ET + I K + ++ V+L V +D Sbjct: 466 RYLILDLETTT-IRRYKRVANPFTKENYVVLSGARDYKGNVFLPRRYFDRSVALRYDDPS 524 Query: 47 CVHDPVMPQV------LKEALENTDVTIVAHNSYFER-TVL-----KACFNLDIPIHRWI 94 + + L+ DV V HN F+ + + + Sbjct: 525 VTSQNHLVEKSSKDSLFLPPLDEYDVI-VGHNIKFDMLHIWRDVEFRRFLR---RGGKIW 580 Query: 95 CTLVLARS-------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 T+ G + L+ V ++ + K++ K + K Sbjct: 581 DTMYAEYLLTGHEVKLGHGAGLEDVAKSYGGQTMKLDAVK-------------QAWSEGK 627 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ---------TINDRGYC 198 + + EY GD+ T IF + + +++++ + G Sbjct: 628 ETYEIPYSTLTEYLHGDLENTELIFCKHMERALEQRQVIICCARMEGLLCTTEMEYNGLK 687 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLV-------SSSRCLEKLKTWLFLETGLHL 251 ++ LA + + + ++L ++LE + + + L T+ F Sbjct: 688 TNLDLAQRQSNELTTKVSELRRQLEESIPHEIPHDCRKFFNWSSNQHLITFFF------G 741 Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQF 310 +LT +T R R + +G LR + Sbjct: 742 GNLTLSTNARESKPLTGE-------LFARHTLF-LRSEY---FPRSAYPNGVFLRPPVHV 790 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 LG +G PS L + + I+ R Sbjct: 791 LGIGDCVVMAG---------LPSEKGTRLFRGYLEAYMRQANFRKSSSILESLRREA 838 >gi|47934668|gb|AAT39772.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 84.0 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 43/225 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +DV A L+ + ++ E++ + + Sbjct: 1 ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKITEFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 ++ L E G + TET +V + + + V +++ Sbjct: 61 SRLQIGDRL-QELGWKPKQFTETGKAKVDETILESIDLPEAQLIAEYLMIQKRVGLIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ ++ + TGR + +P Sbjct: 120 LKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP------------------------ 155 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + RS +G +L+ DL+GIE R LA + Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQ 200 >gi|47934752|gb|AAT39814.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 84.0 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 73/223 (32%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234 G+ +D A L + E ++ EL+S+ +V + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTFRRLKDKVTTFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V R + V ++++ Sbjct: 61 SRKQIAERL-QGLGVKFTNKTEKGNIIVDEKALNSIDLPEAKAVARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + GA TGR + +P S Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG KLV D +G+E R+LA ++ Sbjct: 160 -----FGTECRSCWTVDEGNKLVGIDASGLELRMLAHYMDDED 197 >gi|116666722|pdb|2AJQ|A Chain A, Structure Of Replicative Dna Polymerase Provides Insigts Into The Mechanisms For Processivity, Frameshifting And Editing gi|116666726|pdb|2AJQ|F Chain F, Structure Of Replicative Dna Polymerase Provides Insigts Into The Mechanisms For Processivity, Frameshifting And Editing Length = 704 Score = 83.6 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 76/697 (10%), Positives = 158/697 (22%), Gaps = 141/697 (20%) Query: 67 TIVAHNS-YFERTVLKACFN------LDIPIHRWICTLVLARSNGL-------------- 105 IV HN ++ L +P I TLVL+R Sbjct: 55 LIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGK 114 Query: 106 -------PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 AL+A G L + ++ + + E + + N Sbjct: 115 LPGKRFGSHALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFN------EEMM 168 Query: 159 EYCKGDVTVTREI-------------------------FKRLEPLSSKEQELWYLDQTIN 193 +Y DV VT+ + + E +L Sbjct: 169 DYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDIEHRAAWLLAKQE 228 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G+ D L + R++L ++L E TG L Sbjct: 229 RNGFPFDTKAIEELYVELAARRSELLRKLTETFGSWYQPKGGTEMF---CHPRTGKPLPK 285 Query: 254 ----LTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T ++ + ++ + + + R + + + +V +S ++ Sbjct: 286 YPRIKTPKVGGIFKKPKNKAQREGREPCE-LDTREYVAGAPYTPVEHVVFNPSSRDHIQK 344 Query: 307 TLQFLGA-----SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 LQ G + G + + + +I + Sbjct: 345 KLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDK 404 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV-------TTYA 414 +R +A +GK + G ++ + Sbjct: 405 AWLR--YVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLD 462 Query: 415 RSFNVAPAQVTKDQRAIGKVMEL-ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 Q D +EL L + + A + + Sbjct: 463 GITGKPWVQAGID----ASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTR 518 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + +KK + + ++ L + Q ++ + Sbjct: 519 DNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQ 578 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 K + + GR + R Sbjct: 579 WVAGEQQVKWKRR------------WIKGLDGRKVHVRSPHA------------------ 608 Query: 594 GGKLTENIVQAVSRDILAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDE 641 ++Q+ I ++ + G + VHDEI + Sbjct: 609 ---ALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEI 665 Query: 642 FNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673 + W L EG + Sbjct: 666 AQV--VIETAQEAMRWVGDHWNFRCLLDTEGKMGPNW 700 >gi|47934736|gb|AAT39806.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 83.6 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 71/223 (31%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +D A L + E ++ EL+S+ + + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V R + V ++++ Sbjct: 61 SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + GA TGR + +P S Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG LV D +G+E R+LA ++ Sbjct: 160 -----FGTECRSCWTVDEGSSLVGIDASGLELRMLAHYMDDED 197 >gi|47934742|gb|AAT39809.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 83.6 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 71/223 (31%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +D A L + E ++ EL+S+ + + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V R + V ++++ Sbjct: 61 SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDSIDLPEAKAVARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + GA TGR + +P S Sbjct: 120 LKAVRDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC G +LV D +G+E R+LA ++ Sbjct: 160 -----FGTECRSCWTVDGGNRLVGIDASGLELRMLAHYMDDED 197 >gi|47934710|gb|AAT39793.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 83.6 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 72/222 (32%), Gaps = 44/222 (19%) Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSRC 235 G+ +D A L + E ++ EL+S+ + + Sbjct: 2 RNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPGS 61 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 +++ L G+ + TE V R + V ++++ + Sbjct: 62 RKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDSIDLPEAKAVARYMMLQKRVAQIDSWL 120 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 +A+ DGR+ G + GA TGR + +P S Sbjct: 121 KAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP-------------------- 159 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG +LV D +G+E R+LA ++ Sbjct: 160 ----FGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDED 197 >gi|47934672|gb|AAT39774.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934674|gb|AAT39775.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934676|gb|AAT39776.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934678|gb|AAT39777.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934680|gb|AAT39778.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934686|gb|AAT39781.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934694|gb|AAT39785.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 83.6 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 43/225 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +DV A L+ + ++ E++ + + Sbjct: 1 ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 ++ L E G + TET +V + + + V +++ Sbjct: 61 SRLQIGDRL-QELGWKPKQFTETGKAKVDETILEAIDLPEAQLIAEYLMIQKRVGLIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ ++ + TGR + +P Sbjct: 120 LKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP------------------------ 155 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + RS +G +L+ DL+GIE R LA + Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQ 200 >gi|95928412|ref|ZP_01311160.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684] gi|95135683|gb|EAT17334.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684] Length = 374 Score = 83.6 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 69/194 (35%), Gaps = 29/194 (14%) Query: 4 LFIDFETRS--PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L D ET + +DL + Y E V L F + D V L + P LK L Sbjct: 16 LAKDLETCAVFAVDLEADSMHSYQE--KVCLLQFTYHDTTVLLDPLAAGDLAP--LKPVL 71 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-AL-KAVGEALKLS 119 ++ + + H + ++ L F+++I T++ ++ G L +G+ ++ Sbjct: 72 ADSSIRKIFHAADYDIRCLARDFDIEIR--GLFDTMIASQFLGEEKVGLADVLGKYFDVT 129 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K + + R E Y D ++ LEP Sbjct: 130 LDKRFQRADWSKRPLSPE-------------------MCHYAAEDTRHLEKLVAILEPAL 170 Query: 180 SKEQELWYLDQTIN 193 ++ LW++++ Sbjct: 171 KEKDRLWWVEEEFR 184 >gi|47934750|gb|AAT39813.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 83.6 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 72/223 (32%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +D A L + E ++ EL+S+ + + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V R + V ++++ Sbjct: 61 SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDSIDLPEAKAVARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + ++ TGR + +P S Sbjct: 120 LKAVKDDGRVHGRV-ITNSAVTGRMTHLSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG +LV D +G+E R+LA ++ Sbjct: 160 -----FGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDED 197 >gi|9627454|ref|NP_041982.1| DNA polymerase [Enterobacteria phage T7] gi|118856|sp|P00581|DPOL_BPT7 RecName: Full=DNA polymerase; AltName: Full=T7 DNA polymerase gi|15591|emb|CAA24412.1| unnamed protein product [Enterobacteria phage T7] gi|37956666|gb|AAP33936.1| gene 5 [Enterobacteria phage T7] gi|265524990|gb|ACY75853.1| DNA polymerase [Enterobacteria phage T7] Length = 704 Score = 83.6 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 76/697 (10%), Positives = 158/697 (22%), Gaps = 141/697 (20%) Query: 67 TIVAHNS-YFERTVLKACFN------LDIPIHRWICTLVLARSNGL-------------- 105 IV HN ++ L +P I TLVL+R Sbjct: 55 LIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGK 114 Query: 106 -------PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 AL+A G L + ++ + + E + + N Sbjct: 115 LPGKRFGSHALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFN------EEMM 168 Query: 159 EYCKGDVTVTREI-------------------------FKRLEPLSSKEQELWYLDQTIN 193 +Y DV VT+ + + E +L Sbjct: 169 DYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDIEHRAAWLLAKQE 228 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G+ D L + R++L ++L E TG L Sbjct: 229 RNGFPFDTKAIEELYVELAARRSELLRKLTETFGSWYQPKGGTEMF---CHPRTGKPLPK 285 Query: 254 ----LTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T ++ + ++ + + + R + + + +V +S ++ Sbjct: 286 YPRIKTPKVGGIFKKPKNKAQREGREPCE-LDTREYVAGAPYTPVEHVVFNPSSRDHIQK 344 Query: 307 TLQFLGA-----SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 LQ G + G + + + +I + Sbjct: 345 KLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDK 404 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV-------TTYA 414 +R +A +GK + G ++ + Sbjct: 405 AWLR--YVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLD 462 Query: 415 RSFNVAPAQVTKDQRAIGKVMEL-ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 Q D +EL L + + A + + Sbjct: 463 GITGKPWVQAGID----ASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTR 518 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + +KK + + ++ L + Q ++ + Sbjct: 519 DNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQ 578 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 K + + GR + R Sbjct: 579 WVAGEQQVKWKRR------------WIKGLDGRKVHVRSPHA------------------ 608 Query: 594 GGKLTENIVQAVSRDILAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDE 641 ++Q+ I ++ + G + VHDEI + Sbjct: 609 ---ALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEI 665 Query: 642 FNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673 + W L EG + Sbjct: 666 AQV--VIETAQEAMRWVGDHWNFRCLLDTEGKMGPNW 700 >gi|47934662|gb|AAT39769.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 83.6 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 77/227 (33%), Gaps = 52/227 (22%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +DV A L + E ++ EL+S+ V + Sbjct: 1 ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 +++ L G+ + TE ++VL + + + M + V + Sbjct: 61 SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDRPE---AKAVAHYMMLQK-RVAQ 115 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 +++ ++A+ DGR+ G + GA TGR + +P S Sbjct: 116 IDSWLKAVKDDGRVHGRVVTNGA-VTGRMTHQSPNMAQVPAVSAP--------------- 159 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG LV D +G+E R+LA + Sbjct: 160 ---------FGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDDD 197 >gi|148266297|ref|YP_001233003.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4] gi|146399797|gb|ABQ28430.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4] Length = 409 Score = 83.2 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 23/188 (12%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65 ++ ET DL + Y E V L + + L L N Sbjct: 52 LNTETTLAFDLEADSLHHYTE--KVCLIQVSTNSETALIDPLAPLD--LSPLAPILANPA 107 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125 V V H + ++ L F ++ T++ ++ G + AL K Sbjct: 108 VRKVFHGADYDMRSLYRDFGFEVR--NLFDTMIASQFLGEKEV--GLAAAL-----KKRF 158 Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185 G EL ++ K + + +P EY D ++ +++ +LE + L Sbjct: 159 GVELDKKYQKADWSK------RPFSP----QMIEYAMKDTSLLIKLYLQLEDELRAKGRL 208 Query: 186 WYLDQTIN 193 ++++ Sbjct: 209 AWVEEESE 216 >gi|47934606|gb|AAT39741.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 83.2 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 77/228 (33%), Gaps = 52/228 (22%) Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSS 233 G+ +DV A L + E ++ EL+S+ V + Sbjct: 1 KERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNP 60 Query: 234 RCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 +++ L G+ + TE ++VL + + + M + V Sbjct: 61 GSRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDRPE---AKAVAHYMMLQK-RVA 115 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 ++++ ++A+ DGR+ G + GA TGR + +P S Sbjct: 116 QIDSWLKAVKDDGRVHGRVVTNGA-VTGRMTHQSPNMAQVPAVSAP-------------- 160 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG LV D +G+E R+LA + Sbjct: 161 ----------FGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDDD 198 >gi|47934682|gb|AAT39779.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 83.2 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 62/225 (27%), Gaps = 43/225 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +DV A L+ + ++ E++ + Sbjct: 1 ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEAFPPIVEERWSEKTGKQLKDKVTEFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 ++ L E G + TET +V + + + V +++ Sbjct: 61 SRLQIGDRL-QELGWKPKQFTETGKAKVDETILEAIDLPEAQLIAEYLMIQKRVGLIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ ++ + TGR + +P Sbjct: 120 LKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP------------------------ 155 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + RS +G +L+ DL+GIE R LA + Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQ 200 >gi|255070583|ref|XP_002507373.1| predicted protein [Micromonas sp. RCC299] gi|226522648|gb|ACO68631.1| predicted protein [Micromonas sp. RCC299] Length = 1659 Score = 83.2 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 6/86 (6%) Query: 595 GKLTENIVQAVSRDILAEGMMNA----TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH- 649 + Q + D++ M+ + VL +HDE++ E + A+ Sbjct: 1562 RRAVNTACQGSAADVVKRAMIAVFDELDPSLATPVLQIHDELLFEVDASRVVEAARAVRA 1621 Query: 650 LMTSNP-SWAKGLPLKAEGYESKRYR 674 +M + +PL + + Sbjct: 1622 IMERAGDEFGLTVPLPVKVSAGANWG 1647 >gi|229604938|ref|YP_002875638.1| putative DNA polymerase [Vibrio phage VP93] gi|227976983|gb|ACP44085.1| putative DNA polymerase [Vibrio phage VP93] Length = 811 Score = 83.2 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 46/385 (11%), Positives = 101/385 (26%), Gaps = 74/385 (19%) Query: 288 VLKLNTLVEAMNSD----GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + K + +++ + + + A+ TGR S QNLPR Sbjct: 447 ITKSSGMLQYVIPEKPDGSGIIHHRLNTCATVTGRLSASNPNLQNLPR------------ 494 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 ++ D V+ + E +++ D + +E + G+ L+ Sbjct: 495 --------AEEDKDGNAKSRVKEMFTSRFGEDGRIIEVDYSALEVVMGVVHTGDMKLLEL 546 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 + G D++ A N+ +V + Sbjct: 547 LKAGTDMHCYRLAFQENLDYEEV------------------------------YRRCHDE 576 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + A +F + A + ++ Sbjct: 577 GFEFHALWKSMRTAIKAPSFAAQYGASAAGIAFATGCTVEFAQAFLDNEAALFPDTAKFR 636 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + E+T +R++ + P+G +R V R Sbjct: 637 QVIRDEVERTGNLPG----NLKREMTDDGSVRLYRRGYWTSPAGMRYSFRQV--ERWVKR 690 Query: 582 TTTRQLTREYTY-GGKLTENIVQAVSRDILAEG--MM-------NATKAGYDIVLTVHDE 631 R + + Y +L Q + ++A M+ N ++ VHD Sbjct: 691 ADGRGMEKVMDYKDTQLANYWCQGEAFFLMAVAFGMILRHMIAKNWYDNQVCLITNVHDA 750 Query: 632 IVCETPDTDE--FNASMLYHLMTSN 654 + + + A + +M Sbjct: 751 AYLDAANEEVGREAALAVKDIMERA 775 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 45/314 (14%), Positives = 81/314 (25%), Gaps = 67/314 (21%) Query: 3 TLFIDFETRSPIDLTKCGI--CKYAEDVCVILFAFGFD----DHPVEL-----WDCVHDP 51 LF+D ET + G Y D ++ F D D E+ Sbjct: 4 VLFLDLET---QNYEYHGSKASPYCPDNYIVESGFRVDRKKPDGTTEVGGIESVRYDSRE 60 Query: 52 VMPQ----VLKEALENTDVTIVAHNSYFERTVLKACFNLDI-----PIHRWICTLVLARS 102 E+ IVAHN+ +E + R CT+ Sbjct: 61 AFVNAPTTEWLPIPED-CWLIVAHNAAYEVSWFLQFARESFESFLRRGGRVFCTMHGEYL 119 Query: 103 ------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156 +L + K++ K L +++ L Sbjct: 120 ATDQTSLYP--SLDETAPKYG-GTHKVDGIKLL-------------WEQGVLTSEIDPIL 163 Query: 157 FGEYCK---GDVTVTREIFKRLEPLSSKE------QELWYLD---QTINDRGYCVDVALA 204 EY GDV T F + +++ E G V++ +A Sbjct: 164 LHEYLAGPNGDVANTALCFYGQCAVLAEQGKFPLVWERMDALLSFAFCEWFGLYVNMPVA 223 Query: 205 HTLNQIVDVERTKLDQELE-----SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL---TE 256 + + E +L L L + + + L+ + + + Sbjct: 224 QKNQAVQEAEIAELTTRLRTYLPDDLPEEIDFNWGSDFHMSALLYG-GPIKYKKKVHYDK 282 Query: 257 TTCQRVLSSNKKLT 270 T +V + Sbjct: 283 PTYVKVDAYQLHEH 296 >gi|256786957|ref|ZP_05525388.1| DNA polymerase I [Streptomyces lividans TK24] gi|289770851|ref|ZP_06530229.1| DNA polymerase I [Streptomyces lividans TK24] gi|289701050|gb|EFD68479.1| DNA polymerase I [Streptomyces lividans TK24] Length = 493 Score = 83.2 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 72/501 (14%), Positives = 127/501 (25%), Gaps = 152/501 (30%) Query: 186 WYLDQTINDRGYC----VDVALAHTLNQI------VDVERTKLDQELESLTYGLVSSSRC 235 + +N G V + H L +L +E+ + V Sbjct: 97 MLVAAEMNRAGLPWRADVHREVLHDLLGERYAGGGEPRRLAELAEEVSAAFGRRV-RPDL 155 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + F + G+ + + + P + + R V + + Sbjct: 156 PADVVK-AFGQAGVKVGSTRRWELESL------DHPAVKPLIEY-KKLYRIWVAHGWSWL 207 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + DGR R G + TGRW +P+ Sbjct: 208 QDWVRDGRFRPEF-LAGGTVTGRWVTNGGGGLQIPK------------------------ 242 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R V+A G +LVVAD +E RVLA ++ + ++ DLY + R Sbjct: 243 -------VIRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRETDLYQSVSDR 295 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 +F+ K+ L Y T+G L A L Sbjct: 296 AFSGDRD--------QAKLAVLGAVY----------GQTSGDGLKNLAAL---------- 327 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 R++ R ++ + E G Sbjct: 328 -----------------------------------RRRFPRAVAYVDD----AARAGEEG 348 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 + + R P D G +R+ T G Sbjct: 349 RLVRTWLGRTCPPAAGAADGTEEA-----GLPQDEAADAGDRAQEWVPGYASTNARARGR 403 Query: 596 KLTENIVQA---------------VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 +VQ D+ ++V HDE++ P+ + Sbjct: 404 FARNFVVQGSAADWALLLLAALRQTCADMA-----------AELVFFQHDEVIVHCPEEE 452 Query: 641 EFNASMLYHLMTSNPSWAKGL 661 A+ + + A L Sbjct: 453 ---AATVVAAIRDAAELAGRL 470 >gi|170743378|ref|YP_001772033.1| 3'-5' exonuclease [Methylobacterium sp. 4-46] gi|168197652|gb|ACA19599.1| 3'-5' exonuclease [Methylobacterium sp. 4-46] Length = 204 Score = 83.2 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 33/204 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + +D ET G+ + + + + D +L P VLK L + Sbjct: 20 IAVDTET--------LGLEPHRD--RLCVVQISRGDGEADLVQIAKGGPEPVVLKRVLTD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 VT + H + F+ VL + CT V +R + LK + L Sbjct: 70 PAVTKIFHFARFDLAVLFHRLG--VMPGPIYCTKVASRLSRTYTDRHGLKDLVREL---- 123 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 L K + + EY DV + +L+ + + Sbjct: 124 --------LGIEISKQQQSSDWGAETLSPAQI------EYAASDVLHLHALRAKLDAMLA 169 Query: 181 KEQELWYLDQTINDRGYCVDVALA 204 +E+ + + L Sbjct: 170 REERTALAEACFAFLPTRARLDLL 193 >gi|239947292|ref|ZP_04699045.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis] gi|239921568|gb|EER21592.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis] Length = 203 Score = 83.2 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 56/204 (27%), Gaps = 33/204 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L ID ET G+ + + + L F + + + LK L + Sbjct: 20 LAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHFVHFTNQDYIAPNLKALLLD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 + H + F+ +K ++D+ CT + ++ L + L Sbjct: 70 KTRCKIFHFARFDLAFIKKYLSIDLE--NIFCTKISSKLVRTYTDSHGLNDLCREL---- 123 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 L K + N EY DV ++ L+ + Sbjct: 124 --------LNINISKQQQSSYWGADNLS------SEQKEYAAKDVLYLHQLKDILQKMLL 169 Query: 181 KEQELWYLDQTINDRGYCVDVALA 204 KE ++ L Sbjct: 170 KENRYELAQDIFRFLPTRANLDLL 193 >gi|167393523|ref|XP_001740613.1| DNA polymerase I [Entamoeba dispar SAW760] gi|165895221|gb|EDR22960.1| DNA polymerase I, putative [Entamoeba dispar SAW760] Length = 226 Score = 82.9 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 56/215 (26%), Gaps = 43/215 (20%) Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + A + + +++ + + E+ Sbjct: 40 DITDGERRKAKTIVYGCIYGIGPFSLADQLHISLDESKTFLESFLDQFPSFKKWKEEIIT 99 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 T I +RR + + DK L + Sbjct: 100 NASTT--GFVHTINNRRRRINNLTDSSDKKTL--------------------------AE 131 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD 640 R + +Q + DI+ M+ K G ++L +HDEIV E PD Sbjct: 132 SKRIA------VNSPIQGTAADIIKMCMIEIFKKIHSTWLGVQLLLNIHDEIVLEVPDHL 185 Query: 641 EFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 L +LM +PL K++ Sbjct: 186 LDEVCVTLKYLMEHIVQ--LEVPLVVTVETGKKWG 218 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 14/114 (12%), Positives = 37/114 (32%), Gaps = 5/114 (4%) Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 ++ R+LA + ++ F++ D++ A +T +R K + Y Sbjct: 1 MKLRILANFTKDHHLIEFFKSNIDIHKLIAAHWLKKNVNDITDGERRKAKTIVYGCIYGI 60 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 G + L+++ S +++ + + + N Sbjct: 61 GPFSLAD-----QLHISLDESKTFLESFLDQFPSFKKWKEEIITNASTTGFVHT 109 >gi|315518941|dbj|BAJ51818.1| DNA polymerase-like protein [Ralstonia phage RSB2] Length = 701 Score = 82.9 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 84/741 (11%), Positives = 184/741 (24%), Gaps = 126/741 (17%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFA----FGFDDHPVELW--DCVHDPVMPQVLKE 59 D ET ++ + + D+ + P + + Sbjct: 12 FDIETDGLME------YSVIPGAETTVVSKVHCIVIHDYHANWYRRYRSDQPGAIEEALK 65 Query: 60 ALENTDVTIVAHN-SYFERTVLKA-CFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL 116 L ++D+ VAHN ++ VL+ + R + TLVL+R V Sbjct: 66 VLMDSDLL-VAHNGIKYDIPVLELLYPWFKLDKRRVLDTLVLSRLLFADIKDRDNVLLRK 124 Query: 117 KLSSQKMEEGKELIARFCKGETHECL-YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 K+ L A + + + E EYC+ DV VTR++F + Sbjct: 125 GQLPGKLYGSHSLKAWGYRVGEAKGEYGEGEGNVWAELNDDMVEYCEQDVRVTRKVFDLM 184 Query: 176 EPLSSKE--------------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + + ++ G+ D A L + +R + + Sbjct: 185 VQNTYYFSDDMTQLQYAVRLEHDAAWVLAQQERNGFPFDERGAAALYAELAGKRQTILDK 244 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 + + + + + TG L + P+ ++ Sbjct: 245 VMATFGSWYVAKGGV---TAFRHPRTGAPLTK--YPNVK---------YPKTGDIYTKAG 290 Query: 282 RASRSAVLK---LNTLVEAM-NSDGRLRGT--LQFLGASRTGRWSGCVF---------PP 326 + ++ +K + + N R LQ G T + Sbjct: 291 KLAKIEYVKDRPYTPIEHVVFNPGSRQHIAKVLQERGWVPTEFTETGLPKVDEETLAEAA 350 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA----SEGKKLVVA--- 379 +NLP R +L L + + I G A Sbjct: 351 ENLPEQYRDDVKLIAEYLLLVKRLGQIAEGDNAWLKLCNKGFIHGSVNPNGAVTGRATHA 410 Query: 380 --DLAGIEARVLAWMAGEQWKLKAFETG-----EDLYVTTYARSFNVAPAQVTKDQ--RA 430 +LA + + + + V + + + Sbjct: 411 FPNLAQVPSGTALYGPQCRALFGVEHIRKTVVGWAAAVQVGTDASGLELRCLGHFMARFD 470 Query: 431 IGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 G+ + L + + G + + + + Sbjct: 471 DGQYIRDILEGDIHWVNVEALGLVPKGTKRIKEGPGHEEHDKFRGYAKTFIYAFLYGAGD 530 Query: 490 PEHAIEDLFIGTA-CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + A + +KK + + ++ L L + ++ + + K + Sbjct: 531 EKIGSIIPGGNKAVGKDLKKKFMEGTPAIASLRATLEELLVESQKWVDGVAQVKWKRR-- 588 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + GR + R +++Q+ Sbjct: 589 ----------WIKGLDGRKIKVRSPHA---------------------ALNSLLQSAGAL 617 Query: 609 ILAEGMMNATKA------------GYDIVLTVHDEIVCET--PDTDEFNASMLYHLMTSN 654 + ++ + + + VHDE+ P+ A M Sbjct: 618 LCKYWVVRTEQLLLERGLVHGWHGDFAYLAWVHDEMQIAARTPEIAAIIAECSQQAMREA 677 Query: 655 PS-WAKGLPLKAEGYESKRYR 674 +A L E ++ Sbjct: 678 GDFFAFRCILDTESKVGDNWK 698 >gi|47934630|gb|AAT39753.1| DNA polymerase [Uncultured T7-like podovirus] Length = 239 Score = 82.9 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 74/242 (30%), Gaps = 54/242 (22%) Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT--------- 226 + E ++ G+ D A L + +++ EL+++ Sbjct: 26 QQCRDLEHDVAKATAQQIANGFAFDFPTACNLYCEHEQRMREIEAELQAIFPPIVEERWS 85 Query: 227 ---------YGLVSSSRCLEKLKTWLFLETGL---HLEDLTETTCQRVLSSNKKLTPQAI 274 V + +++ L + + + L N+K+ A Sbjct: 86 EKTGKRLKDKVTVFNVASRQQVAERLAQKGAVWCDTTPSGKPKVDEATLKQNEKIAEAA- 144 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + + L ++A+ DGR+ G + GA TGR + +P S Sbjct: 145 -LVLEYLTLQKRYG-MLKNWLDAVQDDGRIHGRVNTCGA-VTGRMTHSSPNMAQIPSDSL 201 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 R C + EG KLV D +G+E R+LA Sbjct: 202 Y-----------------------------RQCFVVPEGSKLVGIDASGLELRMLAHYMD 232 Query: 395 EQ 396 + Sbjct: 233 DP 234 >gi|92115811|ref|YP_575540.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14] gi|91798705|gb|ABE61080.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14] Length = 206 Score = 82.9 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 56/202 (27%), Gaps = 33/202 (16%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64 ID ET G+ + + + + D ++ LK+ L + Sbjct: 23 AIDTET--------MGLNPHRD--RLCVVQMSPGDGSADVIQIAQGQREAPNLKQLLADP 72 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSSQ 121 + + H + F+ L F + CT + +R LK + L Sbjct: 73 TIVKIFHFARFDLAALSNAFG--VMPQPVYCTKIASRLIRTYTDRHGLKDLVREL----- 125 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 L K + + + + A Y DV + +L+ + ++ Sbjct: 126 -------LNIELSKQQQSSDWGAQTLSDAQLA------YAASDVLHLHALRDKLDAMLAR 172 Query: 182 EQELWYLDQTINDRGYCVDVAL 203 E + L Sbjct: 173 ENRTGMAQACFEFLPTRAKLDL 194 >gi|329939436|ref|ZP_08288772.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] gi|329301665|gb|EGG45559.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] Length = 558 Score = 82.9 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 75/541 (13%), Positives = 132/541 (24%), Gaps = 153/541 (28%) Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC----VDVALA 204 E + T R+ L + E + +N G + + Sbjct: 133 MSPEDLAEVYAAQRRRTDAT-SHPDRMRLLLTSESAGMLVAAEMNAAGLPWRADIHREVL 191 Query: 205 HTLNQI------VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 L +L +E+ + V + F G+ + Sbjct: 192 RELLGERYPGGGEPTRLAELAEEVSAAFGHRV-RPDLPADVVK-AFARAGIRVGSTRRWE 249 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 Q + P + + R V + ++ DGR R G + TGR Sbjct: 250 IQSL------DHPAVRPLLEYKR-LYRIWVAHGWSWLQNWVRDGRFRPEFHAHG-TVTGR 301 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378 W +P+ +R V+A G LVV Sbjct: 302 WVTNGGGALQIPK-------------------------------VIRRAVVADPGHCLVV 330 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD A +E RVLA ++ + ++ +DLY + + RA K+ L Sbjct: 331 ADAAQLEPRVLAAISRDPGLMEVAARADDLYQSVS--------ERAFSGDRAQAKLAVLG 382 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 Y T G L A L Sbjct: 383 AIYGQ----------TKGDGLKNLAAL--------------------------------- 399 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 R++ R + +A E G+ + R P + Sbjct: 400 ------------RRRFPRAVAY---VDEAAR-AGEEGRLVRTWLGRTCPPAAGAGEDAAE 443 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS------------ 606 +P + + G +VQ + Sbjct: 444 EAGIP------------QEEAGDGSRSVPGDARARGRFARNFVVQGSAADWALLLLAALR 491 Query: 607 RDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTS-NPSWAKG-LPLK 664 R ++V HDE++ P + + + A G +P++ Sbjct: 492 RGCAGLA--------AELVFFQHDEVIVHCPVEEADAVVTVLEEASRLATRLAFGEVPVR 543 Query: 665 A 665 Sbjct: 544 V 544 >gi|194100488|ref|YP_002003333.1| gp5 [Yersinia phage Yepe2] gi|193201221|gb|ACF15702.1| gp5 [Yersinia phage Yepe2] Length = 706 Score = 82.9 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 56/475 (11%), Positives = 103/475 (21%), Gaps = 130/475 (27%) Query: 227 YGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +V + + + L + VL K P A + Sbjct: 330 EHVVFNPSSRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEY 389 Query: 284 SRSAV------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-PSRSH 336 N + + DGR+ G++ GA TGR + +P + Sbjct: 390 LMIQKRVGQVAEGDNGWLRMIGEDGRIHGSVNPNGA-VTGRATHSFPNVAQVPSIRAAYG 448 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 E PDP V D +G+E R L Sbjct: 449 EPCRAAFGAEHNMKDGKPDP-----------------WIQVGVDASGLELRCLGHFMYRY 491 Query: 397 WKLKAFETGEDLYVTTYARS-FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + ET + T + + K Y GA Sbjct: 492 DEGEYVETILTGDIHTKNQMAAGLPTRDNAKTF-----NGIYGFLYGAGAAKI------- 539 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 +R+ K + ++ Sbjct: 540 -------------------------------------GQIVGGTSEDGKRLIKNFLEQTP 562 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + A + I ++ V K+ + GR + R Sbjct: 563 AI--------AALREAITGTLVKDSKWVGGEQKVTWKRR----WVRGLDGRKVHVRSPHA 610 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYD-------- 623 ++Q+ I ++ + GY Sbjct: 611 ---------------------ALNTLLQSAGALICKLWIVKTEEMLLEMGYKHGWDGDFC 649 Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673 ++ +HDE + A ++ + W L EG + Sbjct: 650 LMGWIHDEQQLACRTEEI--AKVVIEVSQQAMRWVGDHFNFRCQLDTEGKMGPNW 702 >gi|332709748|ref|ZP_08429707.1| ribonuclease D [Lyngbya majuscula 3L] gi|332351575|gb|EGJ31156.1| ribonuclease D [Lyngbya majuscula 3L] Length = 216 Score = 82.9 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 61/206 (29%), Gaps = 34/206 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L +D ET I Y D + L V LK+ LE Sbjct: 34 LAVDTETMGLI---------YQRD-RLCLVQLCDPQGRVTFVRIDKGQTEAPRLKQLLEA 83 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119 T+V V H + F+ +L+ +D+ CT + ++ LK + + L ++ Sbjct: 84 TNVLKVFHFARFDVAMLRQNLGIDVNP--VFCTKIASKLARTYTSSHGLKELVKELERID 141 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K + + EY DV + ++L + Sbjct: 142 LDKSAQSSDWGN------------------VANLSDQQLEYAANDVRYLLNVRQKLINML 183 Query: 180 SKEQELWYLDQTINDRGYCVDVALAH 205 +E Q V + L H Sbjct: 184 EREDRWELAQQCFEALPTMVSLDLLH 209 >gi|47934714|gb|AAT39795.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 82.9 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 73/223 (32%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +DV A L + E ++ EL+S+ V + Sbjct: 1 ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V + + R + ++++ Sbjct: 61 SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKRAAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + GA TGR + +P S Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG LV D +G+E R+LA ++ Sbjct: 160 -----FGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDED 197 >gi|47934728|gb|AAT39802.1| DNA polymerase [Uncultured T7-like podovirus] Length = 202 Score = 82.9 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 32/171 (18%) Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKLTPQAIQVFNNRMRASR 285 + +++ L + + + + + VL+S P+A M + Sbjct: 57 EPFNPGSRQQIAERLIEKGWKPTKRTEKGSVIVDEEVLASL--DYPEAKA-LAEYMMLQK 113 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + ++++ +EA+ DGR+ G + GA TGR + +P Sbjct: 114 -RIAQIDSWLEAVGKDGRVHGRVITNGA-VTGRMTHMSPNMAQVP--------------- 156 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + R +G KLV D AG+E R+LA +Q Sbjct: 157 ---------NSGSPYGHECRDLWTVEKGYKLVGIDAAGLELRMLAHYMNDQ 198 >gi|194100278|ref|YP_002003476.1| gp5 [Enterobacteria phage BA14] gi|193201273|gb|ACF15753.1| gp5 [Enterobacteria phage BA14] Length = 704 Score = 82.9 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 58/476 (12%), Positives = 103/476 (21%), Gaps = 132/476 (27%) Query: 227 YGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +V + + + L + VL K P A + Sbjct: 330 EHVVFNPASRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEY 389 Query: 284 SRSAV------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-PSRSH 336 N + + DGR+ G++ GA TGR + +P + Sbjct: 390 LMIQKRIGQVAEGDNGWLRMIGEDGRIHGSVNPNGA-VTGRATHSFPNVAQVPSIRAAYG 448 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 E PDP V D +G+E R L Sbjct: 449 EPCRAAFGAEHNMKDGKPDP-----------------WIQVGVDASGLELRCLGHFMYRY 491 Query: 397 WKLKAFETGEDLYVTTYARS-FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + ET + T + + K Y GA Sbjct: 492 DEGEYVETILTGDIHTKNQMAAGLPTRDN-------AKTFIYGFLYGAGAAKI------- 537 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 +R+ K + ++ Sbjct: 538 -------------------------------------GQIVGGTAEDGKRLIKNFLEQTP 560 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + A + I ++ V K+ + GR + R Sbjct: 561 AI--------AALREAITGTLVKDSKWVGGEQKVTWKRR----WVRGLDGRKVHVRSPHA 608 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDI------- 624 ++Q+ I ++ + AG Sbjct: 609 ---------------------ALNTLLQSAGALICKLWIVETERLLLEAGLKHGWDGDFA 647 Query: 625 -VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRYR 674 + VHDEI + + A + L L EG ++ Sbjct: 648 YMAWVHDEI--QVAARTQEIADKIVELAQQAMRNVGDHFNFRCQLDTEGKTGANWK 701 >gi|47934608|gb|AAT39742.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 82.5 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 77/227 (33%), Gaps = 52/227 (22%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +DV A L V E ++ EL+S+ V + Sbjct: 1 ERNGFKLDVPYAEKLMMDVMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 +++ L G+ + TE ++VL + + + M + V + Sbjct: 61 SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDRPE---AKAVAHYMMLQK-RVAQ 115 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 +++ ++A+ DGR+ G + GA TGR + +P S Sbjct: 116 IDSWLKAVKDDGRVHGRVVTNGA-VTGRMTHQSPNMAQVPAVSAP--------------- 159 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG LV D +G+E R+LA + Sbjct: 160 ---------FGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDDD 197 >gi|228907507|ref|ZP_04071364.1| DNA polymerase I (POL I) [Bacillus thuringiensis IBL 200] gi|228851999|gb|EEM96796.1| DNA polymerase I (POL I) [Bacillus thuringiensis IBL 200] Length = 235 Score = 82.5 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 22/221 (9%), Positives = 59/221 (26%), Gaps = 52/221 (23%) Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + + A + ++++ +E H+ + Sbjct: 1 MTLYGITEIGLSDQLNITKAAATSLINQFKKQLPNFLRWESETHREVLT--NGYVKDLFG 58 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 ++R +K ++ S L ++ R+ Sbjct: 59 RKRRFKETILKATSSSTFKNKNSDWRL----------------EKIKRQS------CNFK 96 Query: 602 VQAVSRDILAEGMMNA--------------------------TKAGYDIVLTVHDEIVCE 635 +Q S + + M+N + IVL +HDE++ + Sbjct: 97 IQGTSATQVKKAMVNLFYPTRPDGTKCLDRDEWLQENYKSILEEHDIHIVLQIHDELIFD 156 Query: 636 TPDT-DEFNASMLYHLMTSNPSWA-KGLPLKAEGYESKRYR 674 P + + ++M + G+ ++ + S + Sbjct: 157 VPQDVSQDVLKKISNIMLNAIPSTHLGVTFHSDIHTSPYWG 197 >gi|86171563|ref|XP_966236.1| DNA polymerase 1, putative [Plasmodium falciparum 3D7] gi|46361202|emb|CAG25066.1| DNA polymerase 1, putative [Plasmodium falciparum 3D7] Length = 1444 Score = 82.5 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 34/405 (8%), Positives = 84/405 (20%), Gaps = 109/405 (26%) Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + + + L + + + ++ +GA TGR S QN+ Sbjct: 1016 IKLYRESKKLVQNYIENLPKYIQKNTNKIHCNFNQIGA-STGRLSCDQPNLQNIHSR--- 1071 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + L +D ++ + I Sbjct: 1072 ----FRCAISLKGKEENDTHDNNNNNNNI-----------------PQIHISTNNVSTNN 1110 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + T + + + + L + + Sbjct: 1111 VPMNIMS---STYPLYTMNKKNLITFDYKQMELFVMA-----YLSFDEQLLKLLNYSDVF 1162 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + + + + A L T + + + Q Sbjct: 1163 IETAKVLFNTNDVTNELRRMTKTVIYGILYGQTENGLAKSLLISDTLASNLIENFFQFFP 1222 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + N + ++R + ++ N Sbjct: 1223 NVYRFMQMQKFLVKHM--NCVYTLIGRKRII-----------------------LPNIKN 1257 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN------------------- 616 R +Q + DI+ +++ Sbjct: 1258 K-----------YRISMNTP------IQGCAADIMKFSLLSCFSVLNNNIYNNNKLLKMN 1300 Query: 617 ------ATKAGY-----DIVLTVHDEIVCETPDTDEFNASMLYHL 650 K +++L VHDE++ E ++ + L Sbjct: 1301 NINPLIIHKNQAFLNPTNLILQVHDELLLE---SEHDATKYIIQL 1342 >gi|47934696|gb|AAT39786.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 82.5 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 43/225 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +DV A L+ + ++ E++ + + Sbjct: 1 ERNGFKLDVPEAQILHATLIDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 ++ L E G + TET +V + + + V +++ Sbjct: 61 SRLQIGDRL-QELGWKPKQFTETGKAKVDETILEAIDLPEAQLIAEYLMIQKRVGLIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ ++ + TGR + +P Sbjct: 120 LKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP------------------------ 155 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + RS +G +L+ DL+GIE R LA + Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRRLAHYMQDPEWQ 200 >gi|157866402|ref|XP_001681907.1| mitochondrial DNA polymerase I protein D [Leishmania major strain Friedlin] gi|68125206|emb|CAJ03183.1| putative mitochondrial DNA polymerase I protein D [Leishmania major strain Friedlin] Length = 1577 Score = 82.5 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 49/412 (11%), Positives = 98/412 (23%), Gaps = 88/412 (21%) Query: 260 QRVLSSNKKLTPQ-AIQVFNNRMRASRSAVLKLNT------LVEAMNSDGRLRGTLQFLG 312 + LS K A V + + +V ++S Sbjct: 1192 EDTLSYFKSNHNDSAASVILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHN 1251 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR + QN+P+ +S +R I+ Sbjct: 1252 KTNTGRLASANPNCQNIPKEDKS---------------------------SLRDMFISRF 1284 Query: 373 GKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 G K + AD + +E LA +A ++ L+ D + P D Sbjct: 1285 GDKGMCIEADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRVTMMR---PDLKYTDVLQ 1341 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + +F R Sbjct: 1342 RAKKI-----------------------------KEPEFVKLRQQAKIFSFQRQYGAGVR 1372 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + + + + + V + + + A + R+V Sbjct: 1373 MLSQSTGLTQDQVRMLIEKENETYRGVEVFNKMVTLSA----NSYDASLQNGVRNVRGHQ 1428 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 K + +G V+ + L L VQ + +I+ Sbjct: 1429 FFKGMFPV----LTGSRYVFTESDVPEGMLRERDAVRKSTNFSPTHLKNYPVQGFAGEIV 1484 Query: 611 AEGMMNA----------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LM 651 + M+ + TVHD + + + + +M Sbjct: 1485 -QVMLGVLWRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1535 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 44/306 (14%), Positives = 91/306 (29%), Gaps = 68/306 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----LWD----------- 46 L +D ET + I K + ++ V+L V +D Sbjct: 466 RYLIVDLETTT-IRRYKRIANPFTKENYVVLSGARDYKGNVFMPRRYFDRSIAMRYDDPS 524 Query: 47 CVHDPVMPQV------LKEALENTDVTIVAHNSYFER-TVLKACFNLDI--PIHRWICTL 97 + + L+ DV V HN F+ + + + T+ Sbjct: 525 VTSQNHLVEKSSKDSLFLPPLDEYDVI-VGHNIKFDMLHIWRDVEFRKFLRRGGKIWDTM 583 Query: 98 VLARS-------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 G + L+ V ++ + K++ K + K + Sbjct: 584 YGEYLLTGHEVKLGHGAGLEDVAKSYGGQTMKLDAVKR-------------AWAEGKETY 630 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ---------TINDRGYCVDV 201 + + EY GD+ T IF + + +++++ + G +V Sbjct: 631 EIPYSILTEYLHGDLENTELIFCKHMERALEQRQVIICCARMEGLLCTTEMEYNGLKTNV 690 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLV-------SSSRCLEKLKTWLFLETGLHLEDL 254 LA + + + ++L ++LE + + + L T F L Sbjct: 691 DLAQRQSNELMTKVSELRRQLEESIPHEIPHDCRKFFNWSSNQHLITLFF------GGKL 744 Query: 255 TETTCQ 260 T +T Sbjct: 745 TLSTNA 750 >gi|228969100|ref|ZP_04130014.1| DNA polymerase I (POL I) [Bacillus thuringiensis serovar sotto str. T04001] gi|229073434|ref|ZP_04206570.1| DNA polymerase I (POL I) [Bacillus cereus F65185] gi|228709741|gb|EEL61779.1| DNA polymerase I (POL I) [Bacillus cereus F65185] gi|228790589|gb|EEM38276.1| DNA polymerase I (POL I) [Bacillus thuringiensis serovar sotto str. T04001] Length = 235 Score = 82.5 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 22/221 (9%), Positives = 59/221 (26%), Gaps = 52/221 (23%) Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + + A + ++++ +E H+ + Sbjct: 1 MTLYGITEIGLSDQLNITKAAATSLINQFKKQLPNFLRWESETHREVLT--NGYVKDLFG 58 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 ++R +K ++ S L ++ R+ Sbjct: 59 RKRRFKETILKATSSSTFKNKNSDWRL----------------EKIKRQS------CNFK 96 Query: 602 VQAVSRDILAEGMMNA--------------------------TKAGYDIVLTVHDEIVCE 635 +Q S + + M+N + IVL +HDE++ + Sbjct: 97 IQGTSATQVKKAMVNLFYPTRPDGTKCLDRDEWLQENYKSILEEHDIHIVLQIHDELIFD 156 Query: 636 TPDT-DEFNASMLYHLMTSNPSWA-KGLPLKAEGYESKRYR 674 P + + ++M + G+ ++ + S + Sbjct: 157 VPQDVSQDVLKEISNIMLNAIPSTHLGVTFHSDIHTSPYWG 197 >gi|30387474|ref|NP_848283.1| DNA polymerase [Yersinia pestis phage phiA1122] gi|30314111|gb|AAP20519.1| DNA polymerase [Yersinia pestis phage phiA1122] Length = 704 Score = 82.5 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 74/692 (10%), Positives = 160/692 (23%), Gaps = 131/692 (18%) Query: 67 TIVAHNS-YFERTVLKACFN------LDIPIHRWICTLVLARSNGL-------------- 105 IV HN ++ L +P I TLVL+R Sbjct: 55 LIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGK 114 Query: 106 -------PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 AL+A G L + ++ + + E + + N Sbjct: 115 LPGKRFGSHALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYIDGMEWWNFN------EEMM 168 Query: 159 EYCKGDVTVTREI-------------------------FKRLEPLSSKEQELWYLDQTIN 193 +Y DV VT+ + + E +L Sbjct: 169 DYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDVEHRAAWLLAKQE 228 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G+ D L + R++L ++L E TG L Sbjct: 229 RNGFPFDTKAIEELYVELAARRSELLRKLTETFGLWYQPKGGTEIF---CHPRTGKPLPK 285 Query: 254 ----LTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 ++ + ++ + + + R + + + +V +S ++ Sbjct: 286 YPRIKIPKVGGIFKKPKNKAQREGREPCE-LDTREYVAGAPYTPVEHVVFNPSSRDHIQK 344 Query: 307 TLQFLGA-----SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 LQ G + G + + + +I + Sbjct: 345 KLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDK 404 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A +GK + G ++ + + + Sbjct: 405 AWLR--YVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHH-L 461 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKM-----ASTTGLNLNTFAHLVKTNSAPEEWE 476 ++T + L + A + A + + + Sbjct: 462 DEITGKPWVQAGIDASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNA 521 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 + + + +KK + + ++ L + Q ++ + Sbjct: 522 KTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVA 581 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 K + + GR + R + Sbjct: 582 GEQQVKWKRR------------WIKGLDGRKVHVRSPHS--------------------- 608 Query: 597 LTENIVQAVSRDILAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDEFNA 644 ++Q+ I ++ + G + VHDEI + Sbjct: 609 ALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQV 668 Query: 645 --SMLYHLMTSNPS-WAKGLPLKAEGYESKRY 673 M W L EG + Sbjct: 669 VIDTAQEAMRWVGDHWNFRCLLDTEGKMGPNW 700 >gi|220925751|ref|YP_002501053.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060] gi|219950358|gb|ACL60750.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060] Length = 204 Score = 82.5 bits (202), Expect = 3e-13, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 58/204 (28%), Gaps = 33/204 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + +D ET G+ + + + + D ++ P VLK L + Sbjct: 20 IAVDTET--------LGLEPHRD--RLCVVQISHGDGEADVVQIPKIGPEPVVLKRVLTD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 VT + H + F+ VL + CT V +R LK + L Sbjct: 70 PAVTKIFHYARFDLAVLYHRLG--VMPGPVYCTKVASRLARTYTDRHGLKDLVREL---- 123 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 L K + + Y DV + +L+ + + Sbjct: 124 --------LGVELSKQQQSSDWGADTLTPAQID------YAASDVLHLHALRAKLDAMLA 169 Query: 181 KEQELWYLDQTINDRGYCVDVALA 204 +E+ + + L Sbjct: 170 REERTDMAEACFAFLPTRARLDLL 193 >gi|293571803|ref|ZP_06682819.1| DNA polymerase I [Enterococcus faecium E980] gi|291608057|gb|EFF37363.1| DNA polymerase I [Enterococcus faecium E980] Length = 562 Score = 82.1 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 20/236 (8%), Positives = 61/236 (25%), Gaps = 22/236 (9%) Query: 29 CVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 ++ + D Q + + + +++ L Sbjct: 335 EIVGV--AWGTEKKIYVTNDLSVFEN--QAFHSWITDPNRLKKVYDAKRTYVALNRYTG- 389 Query: 87 DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 L+ A ++ + + + +E + L Sbjct: 390 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------TVYGKGAKKGL 441 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200 + + R +++E+ + + ++ EL + + G VD Sbjct: 442 PEEEELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISGIKVD 501 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 + +++Q++ + ++L LF + GL + + Sbjct: 502 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKQK 556 >gi|326536127|ref|YP_004300559.1| gp5 [Enterobacteria phage 285P] gi|256861516|gb|ACV32472.1| gp5 [Enterobacteria phage 285P] Length = 704 Score = 82.1 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 58/475 (12%), Positives = 100/475 (21%), Gaps = 130/475 (27%) Query: 227 YGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +V + + + L + VL K P A + Sbjct: 330 EHVVFNPASRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEY 389 Query: 284 SRSAV------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-PSRSH 336 N + + DGR+ G++ GA TGR + +P + Sbjct: 390 LMIQKRIGQVAEGDNGWLRMIGDDGRIHGSVNPNGA-VTGRATHSFPNVAQVPSIRAAYG 448 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 E PDP V D +G+E R L Sbjct: 449 EPCRAAFGAEHNMKDGKPDP-----------------WIQVGVDASGLELRCLGHFMYRY 491 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + + ET R K Y GA Sbjct: 492 DEGEYVETILTGD------IHTKNQLAAGLPTRDNAKTFIYGFLYGAGAAKI-------- 537 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 +R+ K + ++ Sbjct: 538 ------------------------------------GQIVGGTAEDGKRLIKNFLEQTPA 561 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + A + I ++ V K+ + GR + R Sbjct: 562 I--------AALREAITGTLVKDSKWVGGEQKVTWKRR----WVRGLDGRKVHVRSPHA- 608 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDI-------- 624 ++Q+ I ++ + AG Sbjct: 609 --------------------ALNTLLQSAGALICKLWIVETERLLLEAGLKHGWDGDFAY 648 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRYR 674 + VHDEI + + A + L L EG ++ Sbjct: 649 MAWVHDEI--QVAARTQEIADKIVELAQQAMRNVGDHFNFRCQLDTEGKTGANWK 701 >gi|294630609|ref|ZP_06709169.1| DNA polymerase I [Streptomyces sp. e14] gi|292833942|gb|EFF92291.1| DNA polymerase I [Streptomyces sp. e14] Length = 566 Score = 82.1 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 73/475 (15%), Positives = 120/475 (25%), Gaps = 155/475 (32%) Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 +L E+ + V ++ F G+ + + V P Sbjct: 198 RRLAELADEVSAAFGHRV-RPDLPAEVVK-AFARAGVKVRSTRRWELRSV------DHPA 249 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + + R V + ++ +GR R G + TGRW +P+ Sbjct: 250 VEPLLEYKR-LYRIWVAHGWSWLQDWVREGRFRPEF-LAGGTVTGRWVTNGGGALQIPK- 306 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +R V+A G +LVVAD +E RVLA + Sbjct: 307 ------------------------------VIRRAVVADPGWRLVVADADQMEPRVLAAI 336 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + ++ DLY + R+F RA K+ L Y Sbjct: 337 SRDPGLMEVAGRTSDLYQSVSDRAFAGD--------RAQAKLAVLGAVY----------G 378 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 T+G L A L R+ Sbjct: 379 QTSGDGLKNLAAL---------------------------------------------RR 393 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP--------- 563 + R + +A E G+ + R P + LP Sbjct: 394 RFPRAVAY---VDEAAR-AGEEGRLVRTWLGRTCPPAAANSEDATQEAGLPQDDPAERPG 449 Query: 564 --SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA---------------VS 606 SG +R +L R G +VQ Sbjct: 450 GGSGDR-----TNGDRGWLPGYASSDARAR--GRFARNFVVQGSAADWALLLLAALRRTC 502 Query: 607 RDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGL 661 RD+ ++V HDE++ P + + A L Sbjct: 503 RDMA-----------AELVFFQHDEVIVHCPKEEADTV---VEAIREAAELAGRL 543 >gi|47934712|gb|AAT39794.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 82.1 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 75/223 (33%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +DV+ A L + E ++ EL+S+ V + Sbjct: 1 ERNGFKLDVSYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V + + R + V ++++ Sbjct: 61 SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + GA TGR + +P S Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG LV D +G+E R+LA ++ Sbjct: 160 -----FGTECRSCWTVDEGNVLVGIDASGLELRMLARYMDDED 197 >gi|212671402|ref|YP_002308401.1| DNA polymerase [Kluyvera phage Kvp1] gi|211997246|gb|ACJ14563.1| DNA polymerase [Kluyvera phage Kvp1] Length = 704 Score = 81.7 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 58/475 (12%), Positives = 100/475 (21%), Gaps = 130/475 (27%) Query: 227 YGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +V + + + L + VL K P A + Sbjct: 330 EHVVFNPASRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEY 389 Query: 284 SRSAV------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-PSRSH 336 N + + DGR+ G++ GA TGR + +P + Sbjct: 390 LMIQKRIGQVAEGDNGWLRMIGEDGRIHGSVNPNGA-VTGRATHSFPNVAQVPSIRAAYG 448 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 E PDP V D +G+E R L Sbjct: 449 EPCRAAFGAEHNMKDGKPDP-----------------WIQVGVDASGLELRCLGHFMYRY 491 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + + ET R K Y GA Sbjct: 492 DEGEYVETILTGD------IHTKNQLAAGLPTRDNAKTFIYGFLYGAGAAKI-------- 537 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 +R+ K + ++ Sbjct: 538 ------------------------------------GQIVGGTAEDGKRLIKNFLEQTPA 561 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + A + I ++ V K+ + GR + R Sbjct: 562 I--------AALREAITGTLVKDSKWVGGEQKVTWKRR----WVRGLDGRKVHVRSPHA- 608 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDI-------- 624 ++Q+ I ++ + AG Sbjct: 609 --------------------ALNTLLQSAGALICKLWIVETERLLLEAGLKHGWDGDFAY 648 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRYR 674 + VHDEI + + A + L L EG ++ Sbjct: 649 MAWVHDEI--QVAARTQEIADKIVELAQQAMRNVGDHFNFRCQLDTEGKTGANWK 701 >gi|47934738|gb|AAT39807.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 81.7 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 70/223 (31%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +D A L + E ++ EL+S+ + + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ + TE V R + V ++ + Sbjct: 61 SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKRVAQIGSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A+ DGR+ G + GA TGR + +P S Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG LV D +G+E R+LA ++ Sbjct: 160 -----FGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDED 197 >gi|254422868|ref|ZP_05036586.1| 3'-5' exonuclease, putative [Synechococcus sp. PCC 7335] gi|196190357|gb|EDX85321.1| 3'-5' exonuclease, putative [Synechococcus sp. PCC 7335] Length = 207 Score = 81.7 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 58/204 (28%), Gaps = 34/204 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + +D ET L + L V LK+ LE Sbjct: 25 IAVDTETMGLNPLRD----------RLCLIQLCDPGGYVCAIRTERGQSSAPNLKQLLEE 74 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA---RSNGLPSALKAVGEAL-KLS 119 ++T + H + F+ L+ + CT + + R+ LK++ + L + Sbjct: 75 KNITKIFHFARFDLATLQHHLGIVTAP--VFCTKIASKIARTYSPSHGLKSLVKELIGIE 132 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++ + Y DV + +L + Sbjct: 133 LDKSQQSSDWGN------------------AAALSDEQLSYAANDVRYLYVLQNKLTEML 174 Query: 180 SKEQELWYLDQTINDRGYCVDVAL 203 +E Q ++ V++ L Sbjct: 175 KREGRWTLAKQCLDCLPVFVELDL 198 >gi|37956721|gb|AAP33990.1| gene 5 [Enterobacteria phage T7] Length = 704 Score = 81.7 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 72/694 (10%), Positives = 156/694 (22%), Gaps = 135/694 (19%) Query: 67 TIVAHNS-YFERTVLKACFN------LDIPIHRWICTLVLARSNGL-------------- 105 IV HN ++ L +P I TLVL+R Sbjct: 55 LIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMSLLRSGK 114 Query: 106 -------PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 L+A G L + ++ + + E + + N Sbjct: 115 LPGKRFGSHTLEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFN------EEMM 168 Query: 159 EYCKGDVTVTREI-------------------------FKRLEPLSSKEQELWYLDQTIN 193 +Y DV VT+ + + E +L Sbjct: 169 DYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDIGYTTFWSESLEAVDIEHRAAWLLAKQE 228 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G+ D L + R++L ++L E + Sbjct: 229 RNGFPFDTKAIEELYVELASRRSELLRKLTETFGSWYQPKGGTEMFCHPRTDKPLPKYPR 288 Query: 254 -LTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T ++ + ++ + + + R + + + +V +S ++ LQ Sbjct: 289 IKTPKVGGIFKKPKNKAQREGREPCE-LDTREYVAGAPYTPVEHVVFNPSSRDHIQKKLQ 347 Query: 310 FLGA-----SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 G + G + + + +I + + Sbjct: 348 EAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDKAWL 407 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV-------TTYARSF 417 R +A +GK + G ++ + + Sbjct: 408 R--YVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPSVRSPYGEQCRAAFGAEHHLDGIT 465 Query: 418 NVAPAQVTKDQRAIGKVMEL-ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 Q D +EL L + + A + + + Sbjct: 466 GKPWVQAGID----ASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNA 521 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 + + + +KK + + ++ L + Q ++ + Sbjct: 522 KTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLKNTPAIAALRESIQQTLVESFQWVA 581 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 K + + GR + R Sbjct: 582 GEQQVKWKRR------------WIKGLDGRKIHVRSPHA--------------------- 608 Query: 597 LTENIVQAVSRDILAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDEFNA 644 ++Q+ I ++ + G + VHDEI + Sbjct: 609 ALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQV 668 Query: 645 SMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673 + W L EG + Sbjct: 669 --VIETAQEAMRWVGDHWNFRCLLDTEGKMGLNW 700 >gi|313760827|gb|ADR79390.1| DNA polymerase [T7-like bacteriophage Eptesicus fuscus/P1/IT/USA/2009] Length = 713 Score = 81.7 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 54/453 (11%), Positives = 98/453 (21%), Gaps = 125/453 (27%) Query: 230 VSSSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNKKLTPQAIQVFNN------R 280 + + L L + L K P A Sbjct: 335 EFNPNSNDHLIKVLTDRGWEPTEFTDKGNPKCDDETLEYVKLKDPVAQHCLELVRKYLVI 394 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + A ++ + SDGR+ G++ GA TGR + +P + H E Sbjct: 395 QKLIAQAAEGKQAWLKNVKSDGRVHGSINPCGA-VTGRATHSSPNMAQVPANGKLHGETC 453 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA------- 393 + + + V D +G+E R L A Sbjct: 454 RGAFGAHHNKKDGK----------------PDPWIQVGVDASGLELRCLGHFAAPYDGGE 497 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA-IGKVMELALGYQGGAKAFQKMA 452 + L + A + D K A Y GA Sbjct: 498 YAENVLNGDIHWTNAVNAGLAPNVPRDKEDHYHDACRNNAKTFIYAFLYGAGAAKI---- 553 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + + K + + Sbjct: 554 ----------------------------------------GSIVGGHAKEGKELTKKFME 573 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + L + A + + + K + L GR + R Sbjct: 574 GTPAIKSLREGIASALVSSEKWVDGEMQVKWKRR------------WLKGLDGRKVHVRS 621 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDI---- 624 + ++Q+ I + ++ K AGY Sbjct: 622 PHS---------------------ALNTLLQSAGALICKKWIVEVEKAMIAAGYKHGWDG 660 Query: 625 ----VLTVHDEIVCETPDTDEFN--ASMLYHLM 651 + VHDE+ + + +M Sbjct: 661 DFAYMAWVHDELQIACRTQEIAEHCVQIAQDVM 693 Score = 74.4 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 70/257 (27%), Gaps = 66/257 (25%) Query: 7 DFETRSPIDLT---KCGICKYAEDVCVILFAFGFDDHPVELWDCVH----DPVMPQVLKE 59 D ET +D CG+ A + + + + L+ Sbjct: 6 DIETDGLLDTVSQFHCGVMINAGTRETLKYG---------VIPMTGIVGGFKEYVEKLEA 56 Query: 60 ALENTDVTIVAHN-SYFERTVLK----ACFN--LDIPIHRWICTLVLARSNGLP------ 106 + D +V HN ++ +K F L+ + + TLVL+R Sbjct: 57 ISASPDGMVVFHNGINYDIPAIKILKKKYFGKNLNFNKAKMVDTLVLSRLMFANLKDKDL 116 Query: 107 ---------------SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 +L+A G L E K+ CK + E Sbjct: 117 GLIRSGKLAGKFWGRHSLEAWGYRLGEMK---GEYKDDFKAMCKEKGIEYKAG---DEWL 170 Query: 152 EAWRLFGEYCKGDVTVTREIF----------------KRLEPLSSKEQELWYLDQTINDR 195 + +Y DV VT ++F E E ++ + Sbjct: 171 TPSQEMLDYNVQDVVVTLKLFERFLTDKYYFPEGETNWEAIESIKLEHEAQWVCSKMERN 230 Query: 196 GYCVDVALAHTLNQIVD 212 G+ DV + + Sbjct: 231 GFPTDVEALEKMYHDLQ 247 >gi|261334251|emb|CBH17245.1| mitochondrial DNA polymerase I protein D,putative [Trypanosoma brucei gambiense DAL972] Length = 1629 Score = 81.7 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 47/428 (10%), Positives = 104/428 (24%), Gaps = 87/428 (20%) Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ--AIQVFNNRMRASRSAVLKLN- 292 +L + + L+ KK A + R + Sbjct: 1220 PSQLDAEQVMRKFRSPTTRQLQVGEDSLTYFKKTHGDKTAETILELR-AMEKLIGTYYEN 1278 Query: 293 -----TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 +V ++ D + TGR + QN+P+ +S Sbjct: 1279 TDDGTGMVSLVHDDDSCIHHELIHNKTNTGRLASANPNCQNIPKEDKS------------ 1326 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +R ++ G+K + AD + +E LA +A +Q L+ + Sbjct: 1327 ---------------PLREMFVSRYGEKGMCIEADYSQLEVVALAVLANDQQMLEDLRSN 1371 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D + A P + K Sbjct: 1372 VDFHCKRVAMMR---PDLQYTEILKKAK-----------------------------KDK 1399 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + +F R + + + R+ + V + + Sbjct: 1400 EPEFVKLRQQAKIFSFQRQYGAGVKMISESTGLTQDQVRHLIEKERETYRGVDVFNSMV- 1458 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + ++ R K + + +G ++ + L + Sbjct: 1459 --ALSANKFDASLQNGSRNVRGHQIFK-----GMFPVITGSRYIFTESDVPEGLLRNKSL 1511 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGM-------MNATKAG--YDIVLTVHDEIVCET 636 + L VQ + +I+ + + G ++ TVHD + + Sbjct: 1512 AVKSTNFSPTHLKNYPVQGFAGEIVQIMLGVLWRHFLRKDNYGGLAVLINTVHDCVWIDC 1571 Query: 637 PDTDEFNA 644 + Sbjct: 1572 HMDVLQDV 1579 Score = 70.5 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 92/292 (31%), Gaps = 66/292 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVIL--------------------FAFGFDDHP 41 L +D ET + + K + ++ V+L A +DD Sbjct: 521 RYLVVDLETTT-VRRYKRVANPFTKENYVVLSGARDYRGQVFMPSRYYSRNVALRYDDLH 579 Query: 42 VE-LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI-----PIHRWIC 95 V V + L++ DV V HN F+ L ++++ + Sbjct: 580 VTSTHSLVKGSSKHSLFLPPLDDYDVL-VGHNIKFDL--LHMWRDVELRRFLKRGGKIWD 636 Query: 96 TLVLARS-------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 T+ G + L+ V ++ + K++ K + K Sbjct: 637 TMYAEYLLTGHEVKLGHGAGLEEVAKSYGGQTPKLDAVK-------------QAWSSGKD 683 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ---------TINDRGYCV 199 +R +Y GD+ T IFK+ + ++++ + + G Sbjct: 684 TCEIPYRTLTQYLHGDLENTELIFKKHIERALAQRQVVIILARMDGLLCTTEMEYNGLKT 743 Query: 200 DVALAHTLNQIVDVERTKLDQEL-------ESLTYGLVSSSRCLEKLKTWLF 244 +V LA + + + + +L + L S+ + + L + F Sbjct: 744 NVQLALSQSNELMCKVKELRRHLDNSIPKEISIDCRKYFNWASNQHLIAFFF 795 >gi|71754987|ref|XP_828408.1| mitochondrial DNA polymerase I protein D [Trypanosoma brucei TREU927] gi|21929665|gb|AAM81965.1|AF445379_1 DNA polymerase I-like protein D [Trypanosoma brucei] gi|70833794|gb|EAN79296.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma brucei] Length = 1629 Score = 81.7 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 47/428 (10%), Positives = 104/428 (24%), Gaps = 87/428 (20%) Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ--AIQVFNNRMRASRSAVLKLN- 292 +L + + L+ KK A + R + Sbjct: 1220 PSQLDAEQVMRKFRSPTTRQLQVGEDSLTYFKKTHGDKTAETILELR-AMEKLIGTYYEN 1278 Query: 293 -----TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 +V ++ D + TGR + QN+P+ +S Sbjct: 1279 TDDGTGMVSLVHDDDSCIHHELIHNKTNTGRLASANPNCQNIPKEDKS------------ 1326 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +R ++ G+K + AD + +E LA +A +Q L+ + Sbjct: 1327 ---------------PLREMFVSRYGEKGMCIEADYSQLEVVALAVLANDQQMLEDLRSN 1371 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D + A P + K Sbjct: 1372 VDFHCKRVAMMR---PDLQYTEILKKAK-----------------------------KDK 1399 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + +F R + + + R+ + V + + Sbjct: 1400 EPEFVKLRQQAKIFSFQRQYGAGVKMISESTGLTQDQVRHLIEKERETYRGVDVFNSMV- 1458 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + ++ R K + + +G ++ + L + Sbjct: 1459 --ALSANKFDASLQNGSRNVRGHQIFK-----GMFPVITGSRYIFTESDVPEGLLRNKSL 1511 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGM-------MNATKAG--YDIVLTVHDEIVCET 636 + L VQ + +I+ + + G ++ TVHD + + Sbjct: 1512 AVKSTNFSPTHLKNYPVQGFAGEIVQIMLGVLWRHFLRKDNYGGLAVLINTVHDCVWIDC 1571 Query: 637 PDTDEFNA 644 + Sbjct: 1572 HMDVLQDV 1579 Score = 70.5 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 92/292 (31%), Gaps = 66/292 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVIL--------------------FAFGFDDHP 41 L +D ET + + K + ++ V+L A +DD Sbjct: 521 RYLVVDLETTT-VRRYKRVANPFTKENYVVLSGARDYRGQVFMPSRYYSRNVALRYDDLH 579 Query: 42 VE-LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI-----PIHRWIC 95 V V + L++ DV V HN F+ L ++++ + Sbjct: 580 VTSTHSLVKGSSKHSLFLPPLDDYDVL-VGHNIKFDL--LHMWRDVELRRFLKRGGKIWD 636 Query: 96 TLVLARS-------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 T+ G + L+ V ++ + K++ K + K Sbjct: 637 TMYAEYLLTGHEVKLGHGAGLEEVAKSYGGQTPKLDAVK-------------QAWSSGKD 683 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ---------TINDRGYCV 199 +R +Y GD+ T IFK+ + ++++ + + G Sbjct: 684 TCEIPYRTLTQYLHGDLENTELIFKKHIERALAQRQVVIILARMDGLLCTTEMEYNGLKT 743 Query: 200 DVALAHTLNQIVDVERTKLDQEL-------ESLTYGLVSSSRCLEKLKTWLF 244 +V LA + + + + +L + L S+ + + L + F Sbjct: 744 NVQLALSQSNELMCKVKELRRHLDNSIPKEISIDCRKYFNWASNQHLIAFFF 795 >gi|37956773|gb|AAP34041.1| gene 5 [Enterobacteria phage T7] Length = 704 Score = 81.7 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 71/694 (10%), Positives = 156/694 (22%), Gaps = 135/694 (19%) Query: 67 TIVAHNS-YFERTVLKACFN------LDIPIHRWICTLVLARSNGL-------------- 105 IV HN ++ L +P I TLVL+R Sbjct: 55 LIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMSLLRSGK 114 Query: 106 -------PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 L+A G L + ++ + + E + + N Sbjct: 115 LPGKRFGSHTLEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFN------EEMM 168 Query: 159 EYCKGDVTVTREI-------------------------FKRLEPLSSKEQELWYLDQTIN 193 +Y DV VT+ + + E ++ Sbjct: 169 DYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDIGYTTFWSESLEAVDIEHRAAWMLAKQE 228 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G+ D L + R++L ++L E + Sbjct: 229 RNGFPFDTKAIEELYVELASRRSELLRKLTETFGSWYQPKGGTEMFCHPRTDKPLPKYPR 288 Query: 254 -LTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T ++ + ++ + + + R + + + +V +S ++ LQ Sbjct: 289 IKTPKVGGIFKKPKNKAQREGREPCE-LDTREYVAGAPYTPVEHVVFNPSSRDHIQKKLQ 347 Query: 310 FLGA-----SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 G + G + + + +I + + Sbjct: 348 EAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDKAWL 407 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV-------TTYARSF 417 R +A +GK + G ++ + + Sbjct: 408 R--YVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPSVRSPYGEQCRAAFGAEHHLDGIT 465 Query: 418 NVAPAQVTKDQRAIGKVMEL-ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 Q D +EL L + + A + + + Sbjct: 466 GKPWVQAGID----ASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNA 521 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 + + + +KK + + ++ L + Q ++ + Sbjct: 522 KTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLKNTPAIAALRESIQQTLVESFQWVA 581 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 K + + GR + R Sbjct: 582 GEQQVKWKRR------------WIKGLDGRKIHVRSPHA--------------------- 608 Query: 597 LTENIVQAVSRDILAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDEFNA 644 ++Q+ I ++ + G + VHDEI + Sbjct: 609 ALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQV 668 Query: 645 SMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673 + W L EG + Sbjct: 669 --VIETAQEAMRWVGDHWNFRCLLDTEGKMGLNW 700 >gi|47934644|gb|AAT39760.1| DNA polymerase [Uncultured T7-like podovirus] Length = 205 Score = 81.3 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 75/225 (33%), Gaps = 54/225 (24%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234 G+ D A +++ T ++ +L+ + ++ + Sbjct: 1 ERNGFAFDFPRACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60 Query: 235 CLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 +++ L + + ++ L N + P+A V + S+ + + Sbjct: 61 SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANI-PEAALVLEY-LTLSK-RIGMV 117 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + ++A+ DGR+ G + GA TGR + +P S Sbjct: 118 RSWLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY---------------- 160 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 RSC EG KLV D +G+E R+LA + Sbjct: 161 -------------RSCFTVDEGNKLVGIDASGLELRMLAHYMDDP 192 >gi|47934656|gb|AAT39766.1| DNA polymerase [Uncultured T7-like podovirus] Length = 205 Score = 81.3 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 77/225 (34%), Gaps = 54/225 (24%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234 G+ D +A +++ T ++ +L+ + ++ + Sbjct: 1 ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60 Query: 235 CLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 +++ L + + ++ L N + P+A V + S+ + + Sbjct: 61 SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANI-PEAALVLEY-LTLSK-RIGMV 117 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + ++A+ DGR+ G + GA TGR + +P S Sbjct: 118 RSWLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY---------------- 160 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 RSC ++G KLV D +G+E R+LA + Sbjct: 161 -------------RSCFTVADGNKLVGIDASGLELRMLAHYMDDP 192 >gi|119960534|ref|YP_949044.1| DNA polymerase I [Arthrobacter aurescens TC1] gi|119947393|gb|ABM06304.1| putative DNA polymerase I [Arthrobacter aurescens TC1] Length = 563 Score = 81.3 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 67/470 (14%), Positives = 115/470 (24%), Gaps = 140/470 (29%) Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 EL ++ + + L L G+ + ++T Q L P + Sbjct: 218 AELRNILNSPSLNPDSPQDLMRALH-RNGIEV----KSTRQWELQE--SKHPAIQPLLAY 270 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + SR + ++A DGR +G +GRW+ +PR Sbjct: 271 -KKLSRLHTANGWSWLDAWVRDGRFHPEY-VVGGVVSGRWASRGGGALQIPRN------- 321 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R+ V A G KL+VAD + +E RVL +A + Sbjct: 322 ------------------------IRAAVHADPGHKLIVADASQLEPRVLVALAQDTKMA 357 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +A + AQ RA K+ L Y Sbjct: 358 EAARD---------KDLYAGIAAQGFGGDRAKAKIALLGAVYGATTG------------- 395 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + A F +G + W + Sbjct: 396 ---ESGRLMPQLTRTYPRAVGFVEQAAREGEAGRTVTTRLGRSSPPPSAGWLRS------ 446 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 Q E +A + R Sbjct: 447 ------QQSTTAEEQRRADNLARSRGRFTRNF---------------------------- 472 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----------AGYDIVLTVH 629 +VQ + + A + + A ++V +H Sbjct: 473 ---------------------VVQGSAAEWAACWLAELRRRLRALRAEGSAAGELVFFLH 511 Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKG-LPLK--AEGYESKRYRK 675 DE++ PD S + T+ G +P++ Y K Sbjct: 512 DEVMVHAPDDAVDACISAIEEAATAAKELMFGRIPVEFPVSVAVVDSYDK 561 >gi|47934648|gb|AAT39762.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934652|gb|AAT39764.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934664|gb|AAT39770.1| DNA polymerase [Uncultured T7-like podovirus] Length = 205 Score = 81.3 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 77/225 (34%), Gaps = 54/225 (24%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234 G+ D +A +++ T ++ +L+ + ++ + Sbjct: 1 ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60 Query: 235 CLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 +++ L + + ++ L N + P+A V + S+ + + Sbjct: 61 SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANI-PEAALVLEY-LTLSK-RIGMV 117 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + ++A+ DGR+ G + GA TGR + +P S Sbjct: 118 RSWLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY---------------- 160 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 RSC ++G KLV D +G+E R+LA + Sbjct: 161 -------------RSCFTVADGNKLVGIDASGLELRMLAHYMDDP 192 >gi|170078658|ref|YP_001735296.1| putative ribonuclease D [Synechococcus sp. PCC 7002] gi|157811866|gb|ABV80286.1| ribonuclease D [Synechococcus sp. PCC 7002] gi|169886327|gb|ACB00041.1| putative ribonuclease D [Synechococcus sp. PCC 7002] Length = 207 Score = 80.9 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ Y + + L D V LK +E Sbjct: 25 IAIDTET--------MGLNPYRD--RLCLVQLCDDAGYVSAIRIAQGQTAAPNLKALMEA 74 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 ++T V H + F+ L+ F ++ + CT + + L + Sbjct: 75 PEITKVFHFARFDLAQLRHVFGIETRP--FFCTKIAS--------------KLGRTYTSS 118 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 K L+ E + + N +Y DV + ++L + +E Sbjct: 119 HGLKALVKELMGVELDKSAQSSDWGNVAVLSAEQLKYASNDVRYLIPMMRKLTAMLQREN 178 Query: 184 ELWYLDQTINDRGYCVDVALA 204 +++ + + + LA Sbjct: 179 RWPLMEECLRCLPTFISLDLA 199 >gi|240139043|ref|YP_002963518.1| 3'-5' exonuclease [Methylobacterium extorquens AM1] gi|240009015|gb|ACS40241.1| 3'-5' exonuclease [Methylobacterium extorquens AM1] Length = 209 Score = 80.9 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 59/205 (28%), Gaps = 37/205 (18%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ P+ LK L + Sbjct: 25 IAIDTET--------LGLNPHRD--RLCVVQVSRGDGSADVVQIRPGDPAPERLKAVLAD 74 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119 V + H + F+ VL F + CT + ++ LK V L + Sbjct: 75 AGVVKIFHFARFDLAVLFNAFG--VMPAPVYCTKIASKLARTYTDRHGLKDVVRELVGVD 132 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++ + + Y DV +RL+ + Sbjct: 133 LSKQQQSSDW-------------GAGTLSQAQID------YAASDVLHLHAARERLDAML 173 Query: 180 --SKEQELWYLDQTINDRGYCVDVA 202 E+ +D+A Sbjct: 174 AREGRTEMAQACFDFLPTRSKLDLA 198 >gi|47934646|gb|AAT39761.1| DNA polymerase [Uncultured T7-like podovirus] Length = 205 Score = 80.9 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 76/225 (33%), Gaps = 54/225 (24%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234 G D +A +++ T ++ +L+ + ++ + Sbjct: 1 ERNGSAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60 Query: 235 CLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 +++ L + + ++ L N + P+A V + S+ + + Sbjct: 61 SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANI-PEAALVLEY-LTLSK-RIGMV 117 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + ++A+ DGR+ G + GA TGR + +P S Sbjct: 118 RSWLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY---------------- 160 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 RSC ++G KLV D +G+E R+LA + Sbjct: 161 -------------RSCFTVADGNKLVGIDASGLELRMLAHYMDDP 192 >gi|47934654|gb|AAT39765.1| DNA polymerase [Uncultured T7-like podovirus] Length = 205 Score = 80.9 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 77/225 (34%), Gaps = 54/225 (24%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234 G+ D +A +++ T ++ +L+ + ++ + Sbjct: 1 ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60 Query: 235 CLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 +++ L + + ++ L N + P+A V + S+ + + Sbjct: 61 SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANI-PEAALVLEY-LTLSK-RIGMV 117 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + ++A+ DGR+ G + GA TGR + +P S Sbjct: 118 RSWLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY---------------- 160 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 RSC ++G KLV D +G+E R+LA + Sbjct: 161 -------------RSCFTVADGNKLVGIDASGLELRMLAHYIDDP 192 >gi|254561638|ref|YP_003068733.1| 3'-5' exonuclease [Methylobacterium extorquens DM4] gi|254268916|emb|CAX24877.1| 3'-5' exonuclease [Methylobacterium extorquens DM4] Length = 209 Score = 80.9 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 59/205 (28%), Gaps = 37/205 (18%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ P+ LK L + Sbjct: 25 IAIDTET--------LGLNPHRD--RLCVVQVSRGDGSADVVQIRPGDPAPERLKAVLAD 74 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119 V + H + F+ VL F + CT + ++ LK V L + Sbjct: 75 AGVVKIFHFARFDLAVLFNAFG--VMPAPVYCTKIASKLARTYTDRHGLKDVVRELVGVD 132 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++ + + Y DV +RL+ + Sbjct: 133 LSKQQQSSDW-------------GAGTLSQAQID------YAASDVLHLHAARERLDAML 173 Query: 180 --SKEQELWYLDQTINDRGYCVDVA 202 E+ +D+A Sbjct: 174 AREGRTEMAQACFDFLPTRSKLDLA 198 >gi|17570811|ref|NP_523320.1| DNA polymerase [Enterobacteria phage T3] gi|118853|sp|P20311|DPOL_BPT3 RecName: Full=DNA polymerase gi|15702|emb|CAA35140.1| 5 [Enterobacteria phage T3] gi|17384295|emb|CAC86283.1| DNA polymerase [Enterobacteria phage T3] Length = 704 Score = 80.5 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 52/475 (10%), Positives = 107/475 (22%), Gaps = 130/475 (27%) Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKLTPQ---AIQVFNNR 280 +V + + ++ L + + + VL + P+ AI + Sbjct: 330 EHVVFNPSSRDHIQKKLQEAGWVPTKFTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEY 389 Query: 281 MRASR---SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSH 336 + + + + + DG++ G++ GA TGR + +P S Sbjct: 390 LMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIPGVRSPYG 448 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 E+ P D +G+E R LA Sbjct: 449 EQCRAAFGAEHHLDGITGKP-----------------WVQAGIDASGLELRCLAHF---- 487 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + F+ GE + R K Y G + Sbjct: 488 --MARFDNGEYAHEILNGDIHTKNQMAAELPTRDNAKTFIYGFLYGAGDEKI-------- 537 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + +KK + + Sbjct: 538 ------------------------------------GQIVGAGKERGKELKKKFLENTPA 561 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 ++ L + Q ++ + K + + GR + R Sbjct: 562 IAALRESIQQTLVESSQWVAGEQQVKWKRR------------WIKGLDGRKVHVRSPHA- 608 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDI-------- 624 ++Q+ I ++ + G Sbjct: 609 --------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAY 648 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRYR 674 + +HDEI + A + + W L EG ++ Sbjct: 649 MAWIHDEIQVACRTEEI--AKTVIEVAQEAMRWVGEHWNFRCLLDTEGKMGANWK 701 >gi|158345045|ref|YP_001522810.1| putative DNA polymerase A [Pseudomonas phage LKD16] gi|114796398|emb|CAK25954.1| putative DNA polymerase A [Pseudomonas phage LKD16] Length = 808 Score = 80.5 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 39/430 (9%), Positives = 93/430 (21%), Gaps = 87/430 (20%) Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL--------------NTLVEAMNSDG 302 +T L + +K +A ++ + +++ ++ DG Sbjct: 400 STSGDALKALEKQGFEAAKLLMRLAELHKDNSSFYITHTYNKDGSIKDTKGMLQYVDEDG 459 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 + +L A+ T R S Q LP E Sbjct: 460 IIHHSLN-TTATATTRLSSSRPNLQQLPSKDEDDPEA---------------------GS 497 Query: 363 CVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 V+ ++ L D +E +LA ++ ++ L+ G D++ Sbjct: 498 RVKEMFVSRFGPDGMLGETDYTALEVVMLAALSKDRNLLEKLMAGTDMH----------- 546 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 + F + + + + Sbjct: 547 -------LYRLAGKHN-------NWNGF-DYDQLVAIKKDPNHEWHGRVMQARKKIKPKA 591 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 F + A + + + E A Sbjct: 592 FSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIAFRQIVRDSAE-------ATSL 644 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL---TREYTYGGK- 596 + + Y Y + R+ K Sbjct: 645 VMYKAEDQMPAGAFSEMGSDGNWRQYRRGYWQAPGGTCYSFRQQERWDKEQRKTVMDFKD 704 Query: 597 --LTENIVQAVSRDILAEGMMNA-----TKAGY----DIVLTVHDEIVCETPDTDEFNAS 645 + Q + ++ + + G+ ++ VHD + + + Sbjct: 705 TQIANYWNQGEAGFMMTVSVGRIFRWMLHRPGFMVTEFLINNVHDAVYTDCHKDTAAEVN 764 Query: 646 M-LYHLMTSN 654 + +M Sbjct: 765 KGVRDIMADA 774 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 68/278 (24%), Gaps = 52/278 (18%) Query: 1 MATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK- 58 M T+ +D ET S + + +++ A+ D D + + Sbjct: 1 MTTIRILDLETES-YEHKGRKASPFDHRNYIVMAAWRDD------VDGKVGQKVEHRFRN 53 Query: 59 -EALENTDVTI---------VAHNSYFERTVL-----KACFNLDIPIHRWICTLVLARSN 103 E+ + VAHN+ FE R CT Sbjct: 54 RAEAEDPNNRWFNLDGVDVIVAHNAMFESNWFFTRYRDEYLAFLRRGGRVWCTQQAEYLL 113 Query: 104 G----LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 L AL + + + K + + ++ + Sbjct: 114 SHQTWLYPALDELAPKYGGTHKVD---------GIKLLWDQGVLTSQ--MDQDLLSEYLS 162 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI---------NDRGYCVDVALAH----T 206 GD+ T +F + G VD+ +A Sbjct: 163 GPCGDIENTALVFYGQLMKLQARGMWAGYLERCEALLGFSAMECAGLKVDLEVAKVNHAK 222 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 + V +L + + L + WL+ Sbjct: 223 QLEEVAEIEAELQKLMPEFPPYFEFKYTSLYHMSAWLY 260 >gi|47934650|gb|AAT39763.1| DNA polymerase [Uncultured T7-like podovirus] Length = 205 Score = 80.5 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 76/225 (33%), Gaps = 54/225 (24%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234 G+ D +A +++ T ++ +L+ + ++ + Sbjct: 1 ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60 Query: 235 CLEKLKTWLFLE---TGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 +++ L + ++ L N + P+A V + S+ + + Sbjct: 61 SRQQVADRLTAKDAVWKDITPTGKPKVDEKSLEQNANI-PEAALVLEY-LTLSK-RIGMV 117 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + ++A+ DGR+ G + GA TGR + +P S Sbjct: 118 RSWLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY---------------- 160 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 RSC ++G KLV D +G+E R+LA + Sbjct: 161 -------------RSCFTVADGNKLVGIDASGLELRMLAHYMDDP 192 >gi|88854986|ref|ZP_01129651.1| DNA polymerase I [marine actinobacterium PHSC20C1] gi|88815514|gb|EAR25371.1| DNA polymerase I [marine actinobacterium PHSC20C1] Length = 558 Score = 80.5 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 68/455 (14%), Positives = 114/455 (25%), Gaps = 118/455 (25%) Query: 198 CVDVALAH---TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 + L T+ + L E+ L + L L + G+ Sbjct: 187 RILTDLLGPRPTMESARPSKVQDLVDEIRELLDAPQLNPESPSDLLRALNVA-GIQ---- 241 Query: 255 TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 T +T L + P + + + +R +++ DGR R G Sbjct: 242 TNSTRAWELKQLR--HPVISPLLHY-KKLARLLTANGWNWLDSWVHDGRFRPDY-VPGGV 297 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374 TGRW+ LP +R VI G Sbjct: 298 VTGRWATSGGGALQLP-------------------------------HLIRGAVIPDPGW 326 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 KLVVAD + +E R+LA M+ ++ ++A + + A + RA K+ Sbjct: 327 KLVVADASQLEPRILAAMSADRGMVEAG---------SSGDLYEGIVASGAVETRAHAKL 377 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 L Y + A I Sbjct: 378 AMLGAMYGATTG----------------ESGRLMPKLARAYPRAIQLVEDAARAGERGEI 421 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 +G + R + L A + + R + Sbjct: 422 VSTQLGRSSPRGEDT--------GTYDESLTPAERAALRERG--RSWGRFTRNFIVQGTA 471 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 + + S RS +G G LTE+ Sbjct: 472 AEWALCWMASIRSR-LVSLGE------------------GKWLTESP------------- 499 Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649 +V +HDE+V P+ + L Sbjct: 500 --------HLVFFLHDEVVVHAPEELAETVAALID 526 >gi|47934670|gb|AAT39773.1| DNA polymerase [Uncultured T7-like podovirus] Length = 205 Score = 80.5 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 77/225 (34%), Gaps = 54/225 (24%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234 G+ D +A +++ T ++ +L+ + ++ + Sbjct: 1 ERNGFAFDFPVACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60 Query: 235 CLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 +++ L + + ++ L N + P+A V + S+ + + Sbjct: 61 SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANI-PEAALVLEY-LTLSK-RIGMV 117 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + ++A+ DGR+ G + GA TGR + +P S Sbjct: 118 RSWLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY---------------- 160 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 RSC ++G KLV D +G+E R+LA + Sbjct: 161 -------------RSCFTVADGNKLVGIDASGLELRMLAHYMDDP 192 >gi|47934642|gb|AAT39759.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 80.5 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 60/227 (26%), Gaps = 49/227 (21%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +DV L + ++ E++++ + + Sbjct: 1 EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSEKTGKQLKDKVTIFNLA 60 Query: 235 CLEKLKTWLFLETGLHLE---DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 +++ L + + L Q+ + + V + Sbjct: 61 SRKQIAERLQGLGWTPTKHTEKGQPIVDEGTLEDIDIPQ---AQLIAEYLMLQK-RVGMI 116 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + ++ ++ + TGR + +P ++ Sbjct: 117 DAWLKRVDEKTHRVHGGVITQGTITGRMAHRNPNLGQVPSVTKP---------------- 160 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 + +RS +G L DL+GIE R LA + Sbjct: 161 --------YGEQIRSLWTVDDGNVLCGTDLSGIELRCLAHYMQDDEW 199 >gi|47934622|gb|AAT39749.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 80.5 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 60/227 (26%), Gaps = 49/227 (21%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +DV L + ++ E++++ + + Sbjct: 1 EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSDKTGKQLKDKVTIFNLA 60 Query: 235 CLEKLKTWLFLETGLHLE---DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 +++ L + + L Q+ + + V + Sbjct: 61 SRKQIAERLQGLGWTPTKHTEKGQPIVDEGTLEDIDIPQ---AQLIAEYLMLQK-RVGMI 116 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + ++ ++ + TGR + +P ++ Sbjct: 117 DAWLKRVDEKTHRVHGGVITQGTITGRMAHRNPNLGQVPSVTKP---------------- 160 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 + +RS +G L DL+GIE R LA + Sbjct: 161 --------YGEQIRSLWTVDDGNVLCGTDLSGIELRCLAHYMQDDEW 199 >gi|47934616|gb|AAT39746.1| DNA polymerase [Uncultured T7-like podovirus] Length = 211 Score = 80.5 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 60/227 (26%), Gaps = 49/227 (21%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +DV L + ++ E++++ + + Sbjct: 2 EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSDKTGKQLKDKVTIFNLA 61 Query: 235 CLEKLKTWLFLETGLHLE---DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 +++ L + + L Q+ + + V + Sbjct: 62 SRKQIAERLQGLGWTPTKHTEKGQPIVDEGTLEDIDIPQ---AQLIAEYLMLQK-RVGMI 117 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + ++ ++ + TGR + +P ++ Sbjct: 118 DAWLKRVDEKTHRVHGGVITQGTITGRMAHRNPNLGQVPSVTKP---------------- 161 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 + +RS +G L DL+GIE R LA + Sbjct: 162 --------YGEQIRSLWTVDDGNVLCGTDLSGIELRCLAHYMQDDEW 200 >gi|307106799|gb|EFN55044.1| hypothetical protein CHLNCDRAFT_134899 [Chlorella variabilis] Length = 1781 Score = 80.5 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 44/301 (14%) Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 +E L + + G +D +L ++ R ++ E+ + ++ Sbjct: 1486 LEQEMPLAVVLAGMEAVGVGIDTQHLQSLRSQLEQRRKDIELEIARALGRRLD-LSKFKE 1544 Query: 239 LKTWLFLETG-----------LHLEDLTETTCQRVLSSN----KKLTPQAIQVFNNRMRA 283 + LF + L+ + + V+ + P + +R A Sbjct: 1545 VSDVLFGKLEGQLGLQPPPCAKKLKRGGYSANKEVMQALVRLNPDCPPVVKLIAEHRRLA 1604 Query: 284 SRSAVLKLNTLVEAMNSD--------------------GRLRGTLQFLGASRTGRWSGCV 323 +V + L++ + G R + + Sbjct: 1605 Y--SVWFIRQLLQCARAGAALAQQLEPAAGAAPLGRAGGGPRIWTVLHQTNSDTGAGAVL 1662 Query: 324 FPP---QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380 +PR + T S +++ VR +A+ G L+ AD Sbjct: 1663 LGLLRRCCVPRTHE--LRMLLKGTAREGDDVSASGQHRLLEANVRKAFVAAPGCVLLGAD 1720 Query: 381 LAGIEARVLAWMAGEQWKLKAFET-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 IE R++A + ++ L F+ D + A+ QV++ R + K ++ + Sbjct: 1721 YRAIELRMMAHFSQDEKLLATFQDGQHDPFRLLAAKWLGKELGQVSQTDRQLIKHLQYGI 1780 Query: 440 G 440 Sbjct: 1781 M 1781 >gi|322829429|gb|EFZ32820.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma cruzi] Length = 1036 Score = 80.5 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 44/290 (15%), Positives = 88/290 (30%), Gaps = 62/290 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVIL--------------------FAFGFDDHP 41 L +D ET + + K + ++ V+L A +DD Sbjct: 517 RYLVLDLETTT-VRRYKRVANPFTKENYVVLSGARDYTGKVFMAGRYFSRNIALRYDDFE 575 Query: 42 VE-LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE-RTVLKACFNLDI--PIHRWICTL 97 V D V + L++ DV V HN F+ + + + T+ Sbjct: 576 VTSTCDLVDGSSQHSLFLPPLDDYDVI-VGHNIKFDLLHIWRDAELRRFLSRGGKVWDTM 634 Query: 98 VLARS-------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 G + L+ + ++ + K++ KE + + K + Sbjct: 635 YAEYLLTGHEVKLGRGAGLEDIAKSYGGQTPKLDAVKE-------------AWAKGKETY 681 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPL---------SSKEQELWYLDQTINDRGYCVDV 201 + L EY GD+ T IF++ + + + G +V Sbjct: 682 EIPYALLSEYLHGDLENTELIFRKHMERALLQRQAIICTARMDGLLCTTEMEYNGLKTNV 741 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLV-------SSSRCLEKLKTWLF 244 LA T + + + +L L+ + + + L + F Sbjct: 742 QLAVTQSNELMGKVVELRNHLDDAIPKEIPPDCRKYFNWSSNQHLIAFFF 791 >gi|23009303|ref|ZP_00050402.1| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1] Length = 209 Score = 80.5 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 46/166 (27%), Gaps = 35/166 (21%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ P LK L + Sbjct: 25 IAIDTET--------LGLNPHRD--RLCVVQISRGDGSADVVQIRPGDPEPVRLKAILAD 74 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119 V + H + F+ VL + CT V ++ LK V L + Sbjct: 75 PGVLKIFHFARFDLAVLFRALG--VMPAPVYCTKVASKLARTYTDRHGLKDVVRELVGVD 132 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 K ++ + + Y DV Sbjct: 133 LSKQQQSSDW-------------GAETLSQAQID------YAASDV 159 >gi|47934658|gb|AAT39767.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 80.5 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 73/223 (32%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +D+ AH+L + E ++ EL+ + V + Sbjct: 1 ERNGFKLDIPFAHSLMMDLMFEMNSIEAELQEIFPPIVEERWSEKTGKRLKDKVTVFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ +TE V + + R + V ++++ Sbjct: 61 SRKQIAERLKG-LGVTFNKMTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + A+ DGR+ G + GA TGR + +P S Sbjct: 120 LGAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 R C EG LV D +G+E R+LA ++ Sbjct: 160 -----FGTECRQCWTVDEGNVLVGIDASGLELRMLAHYMDDED 197 >gi|321399177|emb|CAM66559.2| putative mitochondrial DNA polymerase I protein D [Leishmania infantum JPCM5] Length = 1579 Score = 80.2 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 48/412 (11%), Positives = 97/412 (23%), Gaps = 88/412 (21%) Query: 260 QRVLSSNKKLTPQ-AIQVFNNRMRASRSAVLKLNT------LVEAMNSDGRLRGTLQFLG 312 + LS K V + + +V ++S Sbjct: 1194 EDTLSYFKSNHNDSTASVILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHN 1253 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR + QN+P+ +S +R I+ Sbjct: 1254 KTNTGRLASANPNCQNIPKEDKS---------------------------SLRDMFISRF 1286 Query: 373 GKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 G K + AD + +E LA +A ++ L+ D + P D Sbjct: 1287 GDKGMCIEADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRVTMMR---PDLKYTDVLQ 1343 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + +F R Sbjct: 1344 RAKKI-----------------------------KEPEFVKLRQQAKIFSFQRQYGAGVR 1374 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + + + + + V + + + A + R+V Sbjct: 1375 MLSQSTGLTQDQVRMLIEKENETYRGVEVFNKMVTLSA----NSYDASLQNGVRNVRGHQ 1430 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 K + +G V+ + L L VQ + +I+ Sbjct: 1431 FFKGMFPV----LTGSRYVFTESDVPEGMLRERDVVRKSTNFSPTHLKNYPVQGFAGEIV 1486 Query: 611 AEGMMNA----------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LM 651 + M+ + TVHD + + + + +M Sbjct: 1487 -QVMLGVLWRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1537 Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 44/306 (14%), Positives = 92/306 (30%), Gaps = 68/306 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----LWD----------- 46 L +D ET + I K + ++ V+L V +D Sbjct: 466 RYLIVDLETTT-IRRYKRVANPFTKENYVVLSGARDYKGNVFMPRRYFDRSVAMRYDDPS 524 Query: 47 CVHDPVMPQV------LKEALENTDVTIVAHNSYFER-TVLKACFNLDI--PIHRWICTL 97 + + L+ DV V HN F+ + + + T+ Sbjct: 525 VTSQNHLVEKSSKDSLFLPPLDEYDVI-VGHNIKFDMLHIWRDVEFRKFLRRGGKIWDTM 583 Query: 98 VLARS-------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 G + L+ V ++ + K++ K + K + Sbjct: 584 YGEYLLTGHEVKLGHGAGLEDVAKSYGGQTMKLDAVKR-------------AWAEGKETY 630 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ---------TINDRGYCVDV 201 + + EY GD+ T IF + + +++++ + G +V Sbjct: 631 EIPYSILTEYLHGDLENTELIFCKHMERALEQRQVIICCARMEGLLCTTEMEYNGLKTNV 690 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLV-------SSSRCLEKLKTWLFLETGLHLEDL 254 LA + + + ++L ++LE + + + L T+ F L Sbjct: 691 DLAQRQSNELMTKVSELRRQLEESIPHEIPHDCRKFFNWSSNQHLITFFF------GGKL 744 Query: 255 TETTCQ 260 T +T Sbjct: 745 TLSTNA 750 >gi|29831179|ref|NP_825813.1| DNA polymerase I [Streptomyces avermitilis MA-4680] gi|29608293|dbj|BAC72348.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680] Length = 564 Score = 80.2 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 59/426 (13%), Positives = 103/426 (24%), Gaps = 145/426 (34%) Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 F + G+ + + V P + + R V + ++ DGR Sbjct: 233 FAQAGIKVRSTRRWEIESV------DHPAVKPLLEY-KKLYRIWVAHGWSWLQDWVRDGR 285 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 R G + TGRW +P+ Sbjct: 286 FRPEY-LPGGTVTGRWVTNGGGALQIPK-------------------------------V 313 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R V+A G +LVVAD +E RVLA ++ + ++ DLY + + Sbjct: 314 IRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRESDLYQSVS--------DR 365 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 RA K+ L Y T+G L A L Sbjct: 366 AFSGDRAQAKLAVLGAIY----------GQTSGDGLKNLAAL------------------ 397 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R++ + + A E R Sbjct: 398 ---------------------------RRRFPKAVAY---VDDAARAGEEGRLVRTWLGR 427 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 P +D + G + ++ +R G +VQ Sbjct: 428 TSPPAAGASEDSAEEAGIPQDE---PAPSSGAAQEWMPGYASTNSRAR--GRFARNFVVQ 482 Query: 604 AV-------------------SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN- 643 + + +V HDE++ P + Sbjct: 483 GSAADWALLLLAALRRACAGLAAE---------------LVFFQHDEVIVHCPAEEADTV 527 Query: 644 ASMLYH 649 + + Sbjct: 528 VAAIRE 533 >gi|302553133|ref|ZP_07305475.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736] gi|302470751|gb|EFL33844.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736] Length = 560 Score = 80.2 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 55/413 (13%), Positives = 107/413 (25%), Gaps = 131/413 (31%) Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 F + G+ + + + V P + + R V + ++ +GR Sbjct: 230 FAQAGIKVSSTRKWEIESV------DHPAVKPLLEY-KKLYRIWVAHGWSWLQDWVREGR 282 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 R G + TGRW +P+ Sbjct: 283 FRPEF-LAGGTVTGRWVTNGGGGLQIPK-------------------------------V 310 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R V+A G +LVVAD +E RVLA ++ + ++ DLY + + Sbjct: 311 IRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRESDLYQSVS--------DR 362 Query: 424 VTKDQRAIGKVMELALGYQGGAK-AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 RA K+ L Y + + +A+ + A + Sbjct: 363 AFSGDRAQAKLAVLGAVYGQTSGDGLKNLAAL-----------------RRRFPRAVAYV 405 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 E + ++G C +A +A E+ ++ Sbjct: 406 DEAARAGEEGRLVRTWLGRTCPPAARA--------------TDEAAEEAGIPLSEDDTQR 451 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 + + ++ R G +V Sbjct: 452 --------------------------------DAQQWVPGYASTNARAR--GRFARNFVV 477 Query: 603 QAV-----------SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644 Q R + ++V HDE++ P+ + Sbjct: 478 QGSAADWALLLLAALR-------KTCAELSAELVFFQHDEVIVHCPEEETAAV 523 >gi|159475854|ref|XP_001696029.1| hypothetical protein CHLREDRAFT_175586 [Chlamydomonas reinhardtii] gi|158275200|gb|EDP00978.1| predicted protein [Chlamydomonas reinhardtii] Length = 259 Score = 80.2 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 34/261 (13%), Positives = 64/261 (24%), Gaps = 52/261 (19%) Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAG 394 +++ I L I L+ VR A G LVVAD +E R+LA M Sbjct: 5 RQVNAIDKLLSAFIIPLQPALEKDRYKVRQAFTADVAAGHTLVVADYGQLELRLLAHMTD 64 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L+AF G D + T ++ + + + + Sbjct: 65 CKSMLEAFVLGGDFHSRTAVGMYDHIKDAIRDN---------------------KVLLEW 103 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G + + ++ NF + A + + W Sbjct: 104 DGEGESPLPLVKDLYASERRKAKVLNFSIAYGKTAHGLAADFKTSKEEAQATVDKWYADR 163 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + + + Q + + GR+ + Sbjct: 164 FEVRQWQEKTKEGARQEGK--------------------------VRTLLGRTRPLPGIN 197 Query: 575 NNRSYLNTTTRQLTREYTYGG 595 + R Sbjct: 198 APDFKSKGHS---ERAAINTP 215 >gi|17570813|ref|NP_523322.1| gene 5B protein [Enterobacteria phage T3] gi|579192|emb|CAA35141.1| 5B [Enterobacteria phage T3] gi|17384297|emb|CAC86285.1| gene 5B protein [Enterobacteria phage T3] Length = 372 Score = 79.8 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 51/471 (10%), Positives = 105/471 (22%), Gaps = 130/471 (27%) Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKLTPQ---AIQVFNNRMRAS 284 + + ++ L + + + VL + P+ AI + + Sbjct: 2 FNPSSRDHIQKKLQEAGWVPTKFTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQ 61 Query: 285 R---SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELD 340 + + + + DG++ G++ GA TGR + +P S E+ Sbjct: 62 KRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIPGVRSPYGEQCR 120 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 P D +G+E R LA + Sbjct: 121 AAFGAEHHLDGITGKP-----------------WVQAGIDASGLELRCLAHF------MA 157 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F+ GE + R K Y G + Sbjct: 158 RFDNGEYAHEILNGDIHTKNQMAAELPTRDNAKTFIYGFLYGAGDEKI------------ 205 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + +KK + + ++ L Sbjct: 206 --------------------------------GQIVGAGKERGKELKKKFLENTPAIAAL 233 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + Q ++ + K + + GR + R Sbjct: 234 RESIQQTLVESSQWVAGEQQVKWKRR------------WIKGLDGRKVHVRSPHA----- 276 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDI--------VLTV 628 ++Q+ I ++ + G + + Sbjct: 277 ----------------ALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWI 320 Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRYR 674 HDEI + A + + W L EG ++ Sbjct: 321 HDEIQVACRTEEI--AKTVIEVAQEAMRWVGEHWNFRCLLDTEGKMGANWK 369 >gi|308071862|emb|CBW54783.1| putative DNA polymerase A [Pantoea phage LIMElight] Length = 778 Score = 79.8 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 58/447 (12%), Positives = 116/447 (25%), Gaps = 97/447 (21%) Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRS-AVLKLNTLVEAM----NSDGRLRGTLQFLG 312 T ++++ L R ++ +V KL+ +++ + + + Sbjct: 396 TSAKLVNELASLEKDTGTY-YLRTEYNKDGSVKKLSGMLQYVIPMDDDGSGIIHHRLNTC 454 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 A+ T R S QNLPR + V+ + Sbjct: 455 ATITTRLSSGNPNLQNLPRDG---------------------------TSKVKQMFTSRF 487 Query: 373 GK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 G +++ D + +E + G+ L +TG D++ A N+ V K Sbjct: 488 GSAGRIIEVDYSALEVVMGCVHTGDLKLLHLLQTGTDMHCYRLAFRHNMPYEDVLK---- 543 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 + E Y+ +F Sbjct: 544 LAVEDEDGPDYKMW-------------------------KQRRTDIKPPSFAAQYGATAK 578 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 A C+ + + + + + E+T + +R+ Sbjct: 579 GIAFATGLSLEFCQEFLDNEAKLFPDSIKFRDVIRKEVERTGNLPG----QLKREQNDDG 634 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 PSG+ +R R T + T Q + ++ Sbjct: 635 SFSVYKVGYWTSPSGQRYSFRQKKQWRDGRQTMDYKATEMA-------NYWCQGEAFFMM 687 Query: 611 AEG--MM-------NATKAGYDIVLTVHDEIVCETPDTDEFNASML--YHLMTSNPS--- 656 A M+ + ++ VHD + D + L +M + Sbjct: 688 AVAFGMLIRHLIANDFYDGKVALMTNVHDAAYLDAADEVVGRQAALDTKRIMETARERIL 747 Query: 657 --W-----AKGLPLKAEGYESKR-YRK 675 W K +P A + Y K Sbjct: 748 QFWPDYGILKDVPFPAAAEMGESMYSK 774 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 62/266 (23%), Gaps = 35/266 (13%) Query: 6 IDFETRSPIDLTKCG--ICKYAEDVCVILFAF---------GFDDHPVELWDCVHDPVMP 54 ID ET + G Y V+ A+ D PV+ Sbjct: 3 IDLET---ENYEYYGSKASPYCPQNYVVESAWRYDRALSDGSTDVGPVQYVRYSSREEFI 59 Query: 55 Q---VLKEALENTDVTIVAHNSYFERTVLKACFNLDI-----PIHRWICTLVLARSN--- 103 + IVAHN+ +E + + R CT+ Sbjct: 60 AAGSQWCPI-PDDCWLIVAHNAAYEISWFLQFDRANFEAFLKRGGRVWCTMHGEYLVTDQ 118 Query: 104 -GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 ++L + + E L N Y + Sbjct: 119 QSQYASLDETAPKYGGTHKVDGVKVLWEQGVRTSEIDPMLLHDYLVNGDIPNTALVFYGQ 178 Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R PL + + G VD+ A + + +L EL Sbjct: 179 YQKFTERG----QFPLIWERMDALLAFAYCEWFGLWVDMPTAKKNQKEQEARIAELKAEL 234 Query: 223 E----SLTYGLVSSSRCLEKLKTWLF 244 E L + + ++ Sbjct: 235 EQLLPELPETFEFNWGSNFMMSALIY 260 >gi|86747785|ref|YP_484281.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2] gi|86570813|gb|ABD05370.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2] Length = 204 Score = 79.8 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 54/184 (29%), Gaps = 33/184 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ LK+ L + Sbjct: 20 VAIDTET--------MGLHPHRD--RLCVVQLSNGDGSADVVQIPQGHSDAPNLKKLLGD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 ++ + H + F+ L + CT + +R LK + L Sbjct: 70 PNILKIFHFARFDLAALSNALG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREL---- 123 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 L K + + + A Y DV + +L+ + + Sbjct: 124 --------LNVDLSKQQQSSDWGADTLSDAQLA------YAASDVLHLHALRDKLDAMLA 169 Query: 181 KEQE 184 +E Sbjct: 170 RENR 173 >gi|256395061|ref|YP_003116625.1| DNA-directed DNA polymerase [Catenulispora acidiphila DSM 44928] gi|256361287|gb|ACU74784.1| DNA-directed DNA polymerase [Catenulispora acidiphila DSM 44928] Length = 568 Score = 79.8 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 60/449 (13%), Positives = 94/449 (20%), Gaps = 138/449 (30%) Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 E + L + ++ F + G+ L L + + P Sbjct: 217 REMVAMAARLAEALGIRALNPDSAAQVTK-AFSDAGVKLPSLRRWELEGI------DHPA 269 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + SR + DGR R G TGRW+ + R Sbjct: 270 IPLLLKY-KELSRLYSFNGWVWRDTWVVDGRFRPEYSV-GGVVTGRWAARGGGALQIARR 327 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +R VIA G V AD A +E R+LA M Sbjct: 328 -------------------------------LRKAVIADPGWLFVSADAAQLEPRILAAM 356 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 A + +A ++ A A V + R K+ L Y Sbjct: 357 AQDPGMAEATQS----------DDMYSALAGVFEGSRDQAKLGLLGAMYGQTGGGAAAPL 406 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + + A + +G C + W Sbjct: 407 ALM----------------RRRFPKATALLDDAAREGERGRLVRSQLGRTCPPPSQRW-- 448 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 S R Sbjct: 449 ------------------------------------QSAIAGDAEADAADDSNRR----- 467 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----------GY 622 R R ++QA + + A G Sbjct: 468 -------SGQVARARGR------FTRNFVIQATAAEW-----AEVLLALLRQQLRTLDGP 509 Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHL 650 +V HDE++ P M+ Sbjct: 510 QLVFFQHDEVLVHAPREHAAAVTEMIIQC 538 >gi|157803820|ref|YP_001492369.1| ribonuclease D [Rickettsia canadensis str. McKiel] gi|157785083|gb|ABV73584.1| ribonuclease D [Rickettsia canadensis str. McKiel] Length = 203 Score = 79.8 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 56/204 (27%), Gaps = 33/204 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L ID ET G+ + + + L F + L + LK L + Sbjct: 20 LAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFENQNYTAPNLKALLSD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 + H + F+ +K +I + CT + ++ LK + L Sbjct: 70 KSRCKIFHFARFDLAAIKKYL--EIELENIFCTKISSKLVRTYTDSHGLKDLCREL---- 123 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 L K + N EY DV ++ L+ + Sbjct: 124 --------LNINISKQQQSSYWRADNLS------SEQKEYAAKDVLYLHQLKDILQKMLL 169 Query: 181 KEQELWYLDQTINDRGYCVDVALA 204 KE ++ L Sbjct: 170 KENRFELAQDIFRFVPTRANLDLL 193 >gi|146081058|ref|XP_001464182.1| mitochondrial DNA polymerase I protein D [Leishmania infantum JPCM5] Length = 1073 Score = 79.8 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 48/412 (11%), Positives = 97/412 (23%), Gaps = 88/412 (21%) Query: 260 QRVLSSNKKLTPQ-AIQVFNNRMRASRSAVLKLNT------LVEAMNSDGRLRGTLQFLG 312 + LS K V + + +V ++S Sbjct: 688 EDTLSYFKSNHNDSTASVILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHN 747 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR + QN+P+ +S +R I+ Sbjct: 748 KTNTGRLASANPNCQNIPKEDKS---------------------------SLRDMFISRF 780 Query: 373 GKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 G K + AD + +E LA +A ++ L+ D + P D Sbjct: 781 GDKGMCIEADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRVTMMR---PDLKYTDVLQ 837 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + +F R Sbjct: 838 RAKKI-----------------------------KEPEFVKLRQQAKIFSFQRQYGAGVR 868 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + + + + + V + + + A + R+V Sbjct: 869 MLSQSTGLTQDQVRMLIEKENETYRGVEVFNKMVTLSA----NSYDASLQNGVRNVRGHQ 924 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 K + +G V+ + L L VQ + +I+ Sbjct: 925 FFKGMFPV----LTGSRYVFTESDVPEGMLRERDVVRKSTNFSPTHLKNYPVQGFAGEIV 980 Query: 611 AEGMMNA----------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LM 651 + M+ + TVHD + + + + +M Sbjct: 981 -QVMLGVLWRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1031 Score = 70.5 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 71/224 (31%), Gaps = 45/224 (20%) Query: 63 NTDVTIVAHNSYFER-TVLKACFNLDI--PIHRWICTLVLARS-------NGLPSALKAV 112 + IV HN F+ + + + T+ G + L+ V Sbjct: 40 DEYDVIVGHNIKFDMLHIWRDVEFRKFLRRGGKIWDTMYGEYLLTGHEVKLGHGAGLEDV 99 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 ++ + K++ K + K + + + EY GD+ T IF Sbjct: 100 AKSYGGQTMKLDAVKR-------------AWAEGKETYEIPYSILTEYLHGDLENTELIF 146 Query: 173 KRLEPLSSKEQELWYLDQ---------TINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + + +++++ + G +V LA + + + ++L ++LE Sbjct: 147 CKHMERALEQRQVIICCARMEGLLCTTEMEYNGLKTNVDLAQRQSNELMTKVSELRRQLE 206 Query: 224 SLTYGLV-------SSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260 + + + L T+ F LT +T Sbjct: 207 ESIPHEIPHDCRKFFNWSSNQHLITFFF------GGKLTLSTNA 244 >gi|116671916|ref|YP_832849.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24] gi|116612025|gb|ABK04749.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24] Length = 568 Score = 79.4 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 66/479 (13%), Positives = 110/479 (22%), Gaps = 127/479 (26%) Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + E+ P + E D A L EL Sbjct: 179 AMIAAELQHTGVPWREELHEEILADYLGPRPPLGHRPARLEAL-----------TTELRR 227 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 L + ++L L G+ ++ + + P + + + Sbjct: 228 LLNSPGLNPDSPQELMRALH-RNGIEVKTTRQWELKE------SSHPAIEPLLAY-KKLA 279 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 R ++A ++GR + +G +GRW+ +PR Sbjct: 280 RLHAANGWAWLDAWVNNGRFQPEY-VVGGVVSGRWASRGGGALQIPR------------- 325 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +R V A G KL+VAD + +E RVL +A + +A Sbjct: 326 ------------------QIRGAVHADPGHKLIVADASQLEPRVLVALAQDSKMAEAARD 367 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 + AQ RA KV L Y Sbjct: 368 ---------KDLYAGIAAQGFGGDRAKAKVALLGAIYGATTG----------------ES 402 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + A F +G + W L ++ Sbjct: 403 GRLMPQLTRTYPRAVGFVEQAAREGEAGGTVTSRLGRSSPPPSDRW---------LQSQK 453 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 E+ +R R V + L R + RS T Sbjct: 454 STTAEEQRRADAIARSRGRFTRNFVVQGSAADWAACWLAELRRR----LRAMRSAGGPTG 509 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 +V +HDE++ PD Sbjct: 510 E--------------------------------------LVFFLHDEVMVHCPDGSVDA 530 >gi|322489593|emb|CBZ24851.1| mitochondrial DNA polymerase I protein D,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 1579 Score = 79.4 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 48/412 (11%), Positives = 96/412 (23%), Gaps = 88/412 (21%) Query: 260 QRVLSSNKKLTPQ-AIQVFNNRMRASRSAVLKLNT------LVEAMNSDGRLRGTLQFLG 312 + LS K V + + +V ++S Sbjct: 1194 EDTLSYFKSNHNDSTASVILELRALEKLIGTYYESTDGGTGMVSLVHSMDSCIHHELIHN 1253 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR + QN+P+ +S +R I+ Sbjct: 1254 KTNTGRLASANPNCQNIPKEDKS---------------------------SLRDMFISRF 1286 Query: 373 GKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 G K + AD + +E LA +A ++ L+ D + P D Sbjct: 1287 GDKGMCIEADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRVTMMR---PDLKYTDVLQ 1343 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + +F R Sbjct: 1344 RAKKN-----------------------------KEPEFVKLRQQAKIFSFQRQYGAGVR 1374 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + + + + + V + + + A + R+V Sbjct: 1375 MLSQSTGLTQDQVRMLIEKENETYRGVEVFNKMVTLSA----NSYDASLQNGVRNVRGHQ 1430 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 K + +G V+ + L L VQ + +I+ Sbjct: 1431 FFKGMFPV----LTGSRYVFTESDVPEGMLRERDAVRKSTNFSPTHLKNYPVQGFAGEIV 1486 Query: 611 AEGMMNA----------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LM 651 + M+ + TVHD + + + + +M Sbjct: 1487 -QVMLGVLWRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1537 Score = 74.4 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 46/306 (15%), Positives = 86/306 (28%), Gaps = 68/306 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----LWD----------- 46 L +D ET + I K + ++ V+L V +D Sbjct: 466 RYLILDLETTT-IRRYKRVANPFTKENYVVLSGARDYKGNVFMPRRYFDRSVAMRYDDPS 524 Query: 47 CVHDPVMPQV------LKEALENTDVTIVAHNSYFER-TVLKACFNLDI--PIHRWICTL 97 + + L+ DV V HN F+ + + + T+ Sbjct: 525 VTSQNHLVEKSSKDSLFLPPLDEYDVI-VGHNIKFDMLHIWRDVEFRKFLRRGGKIWDTM 583 Query: 98 VLARS-------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 G + L+ V ++ + K++ K + K + Sbjct: 584 YGEYLLTGQEVKLGHGAGLEDVAKSYGGQTMKLDAVKR-------------AWAEGKETY 630 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPL-SSKEQ--------ELWYLDQTINDRGYCVDV 201 + EY GD+ T IF + + Q E + G +V Sbjct: 631 EIPYSTLTEYLHGDLENTELIFCKHMERALEQRQVIIGCARMEGLLCTTEMEYNGLKTNV 690 Query: 202 ALAHTLNQIVDVERTKLDQELES-------LTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 LA + + + ++L + LE + + L T+ F L Sbjct: 691 DLAQRQSNELMTKVSELRRHLEESIPQEIPHDCRKFFNWSSNQHLITFFF------GGKL 744 Query: 255 TETTCQ 260 T +T Sbjct: 745 TLSTNA 750 >gi|322497562|emb|CBZ32636.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 1579 Score = 79.4 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 48/412 (11%), Positives = 98/412 (23%), Gaps = 88/412 (21%) Query: 260 QRVLSSNKKLTPQ-AIQVFNNRMRASRSAVLKLNT------LVEAMNSDGRLRGTLQFLG 312 + LS K V + + +V ++S Sbjct: 1194 EDTLSYFKSNHNDSTASVILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHN 1253 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR + QN+P+ +S +R I+ Sbjct: 1254 KTNTGRLASANPNCQNIPKEDKS---------------------------SLRDMFISRF 1286 Query: 373 GKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 G K + AD + +E LA +A ++ L+ D + + Sbjct: 1287 GDKGMCIEADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRVTMMRPDLKYTDVLQRSK 1346 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K E ++ A +F R Sbjct: 1347 KIKEPEF--------VKLRQQA------------------------KIFSFQRQYGAGVR 1374 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + + + + + V + + + A + R+V Sbjct: 1375 MLSQSTGLTQDQVRMLIEKENETYRGVEVFNKMVTLSA----NSYDASLQNGVRNVRGHQ 1430 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 K + +G V+ + L L VQ + +I+ Sbjct: 1431 FFKGMFPV----LTGSRYVFTESDVPEGMLRERDVVRKSTNFSPTHLKNYPVQGFAGEIV 1486 Query: 611 AEGMMNA----------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LM 651 + M+ + TVHD + + + + +M Sbjct: 1487 -QVMLGVLWRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1537 Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 44/306 (14%), Positives = 92/306 (30%), Gaps = 68/306 (22%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----LWD----------- 46 L +D ET + I K + ++ V+L V +D Sbjct: 466 RYLIVDLETTT-IRRYKRVANPFTKENYVVLSGARDYKGNVFMPRRYFDRSVAMRYDDPS 524 Query: 47 CVHDPVMPQV------LKEALENTDVTIVAHNSYFER-TVLKACFNLDI--PIHRWICTL 97 + + L+ DV V HN F+ + + + T+ Sbjct: 525 VTSQNHLVEKSSKDSLFLPPLDEYDVI-VGHNIKFDMLHIWRDVEFRKFLRRGGKIWDTM 583 Query: 98 VLARS-------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 G + L+ V ++ + K++ K + K + Sbjct: 584 YGEYLLTGHEVKLGHGAGLEDVAKSYGGQTMKLDAVKR-------------AWAEGKETY 630 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ---------TINDRGYCVDV 201 + + EY GD+ T IF + + +++++ + G +V Sbjct: 631 EIPYSILTEYLHGDLENTELIFCKHMERALEQRQVIICCARMEGLLCTTEMEYNGLKTNV 690 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLV-------SSSRCLEKLKTWLFLETGLHLEDL 254 LA + + + ++L ++LE + + + L T+ F L Sbjct: 691 DLAQRQSNELMTKVSELRRQLEESIPHEIPHDCRKFFNWSSNQHLITFFF------GGKL 744 Query: 255 TETTCQ 260 T +T Sbjct: 745 TLSTNA 750 >gi|84495963|ref|ZP_00994817.1| putative DNA polymerase I [Janibacter sp. HTCC2649] gi|84382731|gb|EAP98612.1| putative DNA polymerase I [Janibacter sp. HTCC2649] Length = 565 Score = 79.4 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 57/335 (17%), Positives = 92/335 (27%), Gaps = 63/335 (18%) Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK-GDVTVTREIFKRLEPLSSKEQEL 185 +EL+ W C + R+ E Sbjct: 126 EELVRGDGHLRADAASGWLETDERLLRWAEAALECAVRQRDRAESLGARIVGTIHSESAA 185 Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVD------------VERTKLDQELESLTYGLVSSS 233 + + + G VD A+ L R + + L + + Sbjct: 186 ALMCLELEEGGLPVDRAVMERLIGEFAGPRAASEEAAAVARRERDAEVLRHVPGRESTDL 245 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK-LN 292 R +++ L G+ + + + VL + + + P + +A R A Sbjct: 246 RNPLQVRDML-AGVGVDVPNTRKW----VLDAYRHVHPVVDALL-AWRKAERIATTYGYR 299 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L + + D RLRG GR + NLP Sbjct: 300 WLDQCVGPDDRLRGG-WTACDGAAGRMTAEN-GLHNLP---------------------- 335 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +RS V A G V ADL IE RVLA ++G+ +A Sbjct: 336 ---------AALRSGVAAHPGHVFVRADLGQIEPRVLAVVSGDPAFAEATRA-------- 378 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 A R + K+ LA Y + A Sbjct: 379 --DDLYAPVASRLGVDRPVAKIAVLAAMYGQRSGA 411 Score = 69.0 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 18/147 (12%) Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 A+ R V + + ++P+GR L VG N + G Sbjct: 424 PVAMGLLDRAYDTGVRGEPLRTFGGRLIPTGRFLAQSPVGTNPALD----------AARG 473 Query: 595 GKLTENIVQAVSRDILAEGMMNATK----AGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650 I+Q + ++ G IVL +HDE++ P++ + L Sbjct: 474 RFARNAIIQGAAAELFKAWAATVRALGTPMGAQIVLCLHDELLVHAPESRAAEVAALVDQ 533 Query: 651 -MTSNP-SWAKGLPLK--AEGYESKRY 673 + WA G P++ A+ R+ Sbjct: 534 SLADASRRWAAGAPVRFVADTSIIARW 560 >gi|228907509|ref|ZP_04071366.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus thuringiensis IBL 200] gi|228852001|gb|EEM96798.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus thuringiensis IBL 200] Length = 464 Score = 79.4 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 47/380 (12%), Positives = 99/380 (26%), Gaps = 70/380 (18%) Query: 11 RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV---HD----------PVMPQVL 57 + ID G + + +I GF D+ H + L Sbjct: 86 YTFIDTKSTGFNPFKDS--IISITIGFMDNCFFYIPIKPFKHGLSQHISTLSLEYTMKKL 143 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEA 115 LE D ++ NS L + DI + + T + A +K + Sbjct: 144 SPLLE-KDTLLILSNSKQHIHALYNWCDFDITYNIFWDTEIAANLLNENHPKGVKEWYKE 202 Query: 116 LKLSS--------QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L ++ K +I + + + + EY K Sbjct: 203 YVLPRLISNETILNTIDRKKYMIEKTLYDQLQHHVATYFACYDIFMLKSVFEYQKRIFEN 262 Query: 168 T-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT-LNQIVDVERTKLDQELESL 225 + + E L + T +G + + QI+ + + +E+ + Sbjct: 263 PKFNLGPIYKLFREIEMPLIAVLTTAERKGIKISEEFLSNDVKQILQTKFQSVKKEILNY 322 Query: 226 TYGLV-------------------------SSSRCLEKLKTWLFLETGLHLE-------- 252 + + L L+++ + Sbjct: 323 LGSTITLNNCMHPPKQQNKYKGANKLTSTLFNINSPAHLAQKLYIDNAILKPIMEYDKSC 382 Query: 253 ----DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM--NSDGRLRG 306 + T ++ L N P + R + ++L + D ++ Sbjct: 383 KSVISKLK-TDRKTLIRNLSKHPVIPLILEYRR-LVKLISSFCDSLPKEQQGTIDNKIHP 440 Query: 307 TLQFLGASRTGRWSGCVFPP 326 +G ++TGR S Sbjct: 441 IYNSVG-TKTGRMSCSSPNL 459 >gi|302559315|ref|ZP_07311657.1| DNA polymerase I [Streptomyces griseoflavus Tu4000] gi|302476933|gb|EFL40026.1| DNA polymerase I [Streptomyces griseoflavus Tu4000] Length = 563 Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 62/437 (14%), Positives = 108/437 (24%), Gaps = 148/437 (33%) Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 F + G+ + + V P + + R V + ++ DGR Sbjct: 233 FAQAGVKVASTRRWELESV------DHPAVAPLIEY-KKLYRIWVAHGWSWLQDWVRDGR 285 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 R G + TGRW +P+ Sbjct: 286 FRPEF-LAGGTVTGRWVTNGGGALQIPK-------------------------------V 313 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G +LVVAD +E RVLA ++ + ++ DLY + + Sbjct: 314 IRRAAVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRESDLYQSVS--------DR 365 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 RA K+ L Y T+G L A L Sbjct: 366 AFSGDRAQAKLAVLGAVY----------GQTSGDGLKNLAAL------------------ 397 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R++ R ++ + E G+ + Sbjct: 398 ---------------------------RRRFPRAVAYVDD----AARAGEEGRLVRTWLG 426 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 R P D +P +R+++ R G +VQ Sbjct: 427 RTCPPAARTGDDAAEEAGIPVA---DEGTPDGDRAWVPGYASTDARAR--GRFARNFVVQ 481 Query: 604 AV-------------------SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644 + + +V HDE++ P+ + Sbjct: 482 GSAADWALLLLAALRRTLAGMAAE---------------LVFFQHDEVIVHCPEEEAETV 526 Query: 645 SMLYHLMTSNPSWAKGL 661 + A L Sbjct: 527 ---VAAIREAAELAGRL 540 >gi|47934666|gb|AAT39771.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 73/223 (32%), Gaps = 44/223 (19%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ +D+ AH+L + E ++ EL+ + V + Sbjct: 1 ERNGFKLDIPFAHSLMMDLMFEVNSIEAELQEIFPPIVEERWSEKTGKRLKDKVTVFNPG 60 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ L G+ +TE V + + R + V ++++ Sbjct: 61 SRKQIAERLKG-LGVTFNKMTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKRVAQIDSW 119 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + A+ DGR+ G + GA TGR + +P S Sbjct: 120 LGAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVPAVSAP------------------- 159 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 R C EG LV D +G+E R+LA ++ Sbjct: 160 -----FGTECRQCWTVDEGNVLVGIDASGLELRMLAHYMDDED 197 >gi|91205563|ref|YP_537918.1| ribonuclease D [Rickettsia bellii RML369-C] gi|157827279|ref|YP_001496343.1| ribonuclease D [Rickettsia bellii OSU 85-389] gi|91069107|gb|ABE04829.1| Ribonuclease D [Rickettsia bellii RML369-C] gi|157802583|gb|ABV79306.1| Ribonuclease D [Rickettsia bellii OSU 85-389] Length = 203 Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 58/185 (31%), Gaps = 33/185 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L ID ET G+ Y + + L F + L ++ LK L + Sbjct: 20 LAIDTET--------MGLNLYRD--KLCLLQFSNGNGDAHLVHFLNQNYNAPNLKNLLSD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 + + H + F+ +K +D+ CT + ++ LK + L Sbjct: 70 KERCKIFHFARFDLAAIKKYLGIDLE--NIFCTKISSKLVRTYTESHGLKDICREL---- 123 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 L K + N + ++ EY DV ++ + L + Sbjct: 124 --------LGVNISKQQQSSYWGADNLSSDQQ------EYAAKDVLYLHKLREHLIEMLV 169 Query: 181 KEQEL 185 KE Sbjct: 170 KENRF 174 >gi|319408044|emb|CBI81698.1| Ribonuclease D [Bartonella schoenbuchensis R1] Length = 206 Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 25/203 (12%), Positives = 53/203 (26%), Gaps = 31/203 (15%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + +D ET G+ Y + + + D ++ L + LE+ Sbjct: 22 IAVDTET--------LGLQPYRD--RLCVVQLSSGDGTADIIQIAKGQNSAPNLVKLLED 71 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 +T + H F+ +L F + CT + ++ ++ Sbjct: 72 KAITKIFHFGRFDLAILAHTFGI--MPDVVFCTKIASKL-----------------TRTY 112 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREA--WRLFGEYCKGDVTVTREIFKRLEPLSSK 181 + L + + + R EY DV + E + Sbjct: 113 TDRHGLKEICSELLNVNISKQQQSSDWATETLSRAQIEYAASDVLYLHRLKSVFETRLKR 172 Query: 182 EQELWYLDQTINDRGYCVDVALA 204 E+ + L Sbjct: 173 EERENVAKACFQFLPMRAKLDLL 195 >gi|21929661|gb|AAM81963.1|AF445377_1 DNA polymerase I-like protein B [Trypanosoma brucei] Length = 1404 Score = 79.0 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 54/428 (12%), Positives = 115/428 (26%), Gaps = 102/428 (23%) Query: 260 QRVLSSNKKLT-PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 +R + +K +A V R + + L L L RG+ FL + GR Sbjct: 1006 KRTIEQLRKRHLDEATFVVLQRHKLEVA-GLLLQKLQLE-------RGSANFLHSGTDGR 1057 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK--L 376 S + + + + + +S S + + +R ++ G+K Sbjct: 1058 LSI----LHSDNKVRQYIDLTATTTSRTTSSYPSCQNIPKDDKSSLRHLFVSRFGEKGRC 1113 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V D + +E V+A + ++ + G D +V + ++ ++ Sbjct: 1114 VEIDYSQLEIVVMAVLCEDERLVSDLNQGVDFHVKRASFFSGISYDEIYN---------- 1163 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 GY+ G F K+ + +F R P Sbjct: 1164 ---GYKRGEAKFLKL---------------------RKVAKTFSFQRLYGAGVPLLHKTT 1199 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + +++ +S + G Sbjct: 1200 GIPVQDLQECIRREEEEYPGISRFHRLARTVALRANNPGLPTHFI--------------- 1244 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM- 615 + LP+G + Y + + +Q+ + LA+ M+ Sbjct: 1245 ---VELPTGLRVCY---------------KTRDVVLNLPPVKNYPIQSFGAE-LAQMMIG 1285 Query: 616 NA---------TKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSN--------PSW 657 ++ VHD + + + +M P Sbjct: 1286 RVFRQFVRKSFYGQKAFMINFVHDSLWLDCHMSVLEECVHETRTIMEEVDTYVAKTFPGV 1345 Query: 658 AKGLPLKA 665 +PLK Sbjct: 1346 KLKVPLKV 1353 Score = 44.0 bits (102), Expect = 0.081, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 50/235 (21%), Gaps = 55/235 (23%) Query: 68 IVAHNSYF------ERTVLKACFNLDIPIHRWICTLVLARSNGL------PSALKAVGEA 115 IV H+ + L+ R CT+ ++L V Sbjct: 504 IVCHDVKHFVLLIWDDPELRRFLK---RGGRVWCTMFAEYLLDAQRCQSGSNSLHDVAMK 560 Query: 116 LK-LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L+ Q G Y V +F+ Sbjct: 561 YGILTPQSSVLG--------------------LSTPDLPIAFIQHYLVAAVDAISRVFQE 600 Query: 175 LEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL--- 222 + + +I G +D A Q + +D+ L Sbjct: 601 QLKKACGNSQLICVAHRMDSLLAMASIEKAGIHIDSKEATLQAQAIRNRLLAIDKSLSLY 660 Query: 223 ----ESLTYGLVSSSRCLEKLKTWLF---LETGLHLEDLTETTCQRVLSSNKKLT 270 L L+ L+ + F + G +T L Sbjct: 661 APDEIPLDMQRFFDWTSLQHLQAYFFGGSITLGYTDISRDSSTWTAHLIHLCHKY 715 >gi|71755261|ref|XP_828545.1| mitochondrial DNA polymerase I protein B [Trypanosoma brucei TREU927] gi|70833931|gb|EAN79433.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma brucei] gi|261334421|emb|CBH17415.1| conserved hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 1404 Score = 79.0 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 54/428 (12%), Positives = 115/428 (26%), Gaps = 102/428 (23%) Query: 260 QRVLSSNKKLT-PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 +R + +K +A V R + + L L L RG+ FL + GR Sbjct: 1006 KRTIEQLRKRHLDEATFVVLQRHKLEVA-GLLLQKLQLE-------RGSANFLHSGTDGR 1057 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK--L 376 S + + + + + +S S + + +R ++ G+K Sbjct: 1058 LSI----LHSDNKVRQYIDLTATTTSRTTSSYPSCQNIPKDDKSSLRHLFVSRFGEKGRC 1113 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V D + +E V+A + ++ + G D +V + ++ ++ Sbjct: 1114 VEIDYSQLEIVVMAVLCEDERLVSDLNQGVDFHVKRASFFSGISYDEIYN---------- 1163 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 GY+ G F K+ + +F R P Sbjct: 1164 ---GYKRGEAKFLKL---------------------RKVAKTFSFQRLYGAGVPLLHKTT 1199 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + +++ +S + G Sbjct: 1200 GIPVQDLQECIRREEEEYPGISRFHRLARTVALRANNPGLPTHFI--------------- 1244 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM- 615 + LP+G + Y + + +Q+ + LA+ M+ Sbjct: 1245 ---VELPTGLRVCY---------------KTRDVVLNLPPVKNYPIQSFGAE-LAQMMIG 1285 Query: 616 NA---------TKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSN--------PSW 657 ++ VHD + + + +M P Sbjct: 1286 RVFRQFVRKSFYGQKAFMINFVHDSLWLDCHMSVLEECVHETRTIMEEVDTYVAKTFPGV 1345 Query: 658 AKGLPLKA 665 +PLK Sbjct: 1346 KLKVPLKV 1353 Score = 44.0 bits (102), Expect = 0.081, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 50/235 (21%), Gaps = 55/235 (23%) Query: 68 IVAHNSYF------ERTVLKACFNLDIPIHRWICTLVLARSNGL------PSALKAVGEA 115 IV H+ + L+ R CT+ ++L V Sbjct: 504 IVCHDVKHFVLLIWDDPELRRFLK---RGGRVWCTMFAEYLLDAQRCQSGSNSLHDVAMK 560 Query: 116 LK-LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L+ Q G Y V +F+ Sbjct: 561 YGILTPQSSVLG--------------------LSTPDLPIAFIQHYLVAAVDAISRVFQE 600 Query: 175 LEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL--- 222 + + +I G +D A Q + +D+ L Sbjct: 601 QLKKACGNSQLICVAHRMDSLLAMASIEKAGIHIDSKEATLQAQAIRNRLLAIDKSLSLY 660 Query: 223 ----ESLTYGLVSSSRCLEKLKTWLF---LETGLHLEDLTETTCQRVLSSNKKLT 270 L L+ L+ + F + G +T L Sbjct: 661 APDEIPLDMQRFFDWTSLQHLQAYFFGGSITLGYTDISRDSSTWTAHLIHLCHKY 715 >gi|188581677|ref|YP_001925122.1| 3'-5' exonuclease [Methylobacterium populi BJ001] gi|179345175|gb|ACB80587.1| 3'-5' exonuclease [Methylobacterium populi BJ001] Length = 209 Score = 79.0 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 59/205 (28%), Gaps = 37/205 (18%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ P+ LK L + Sbjct: 25 IAIDTET--------LGLNPHRD--RLCVVQISRGDGSADVVQIRPGDPAPERLKAVLAD 74 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119 + + H + F+ VL F + CT V ++ LK V L + Sbjct: 75 PQIVKIFHFARFDLAVLFKAFG--VMPMPVYCTKVASKLARTYTDRHGLKDVVRELVGVD 132 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++ + + Y DV +RL+ + Sbjct: 133 LSKQQQSSDW-------------GAEALSQAQID------YAASDVLHLHAARERLDAML 173 Query: 180 --SKEQELWYLDQTINDRGYCVDVA 202 E+ +D+A Sbjct: 174 AREGRTEMAQACFDFLPTRAKLDLA 198 >gi|115374272|ref|ZP_01461557.1| DNA polymerase I domain protein [Stigmatella aurantiaca DW4/3-1] gi|115368693|gb|EAU67643.1| DNA polymerase I domain protein [Stigmatella aurantiaca DW4/3-1] Length = 699 Score = 78.6 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 91/739 (12%), Positives = 172/739 (23%), Gaps = 183/739 (24%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD-HPVELWDCVHDPVMPQVLKE 59 M D ET ++ + + L D Q Sbjct: 1 MKIWSFDTETHRKRPGLVSPP--------LVCGSIAARELGSERLLD---KEQARQFFAN 49 Query: 60 ALENTDVTIVAHNSYFERTVLK--ACFNLD-----IPIHRWICTLVLARSNGLPSALKAV 112 A+ N DV +V N ++ V+ + ++ + R + L V Sbjct: 50 AISNRDVHLVGANLPYDLGVMAADNSWLIESIFDALDAGRLHDVATREALIDIAKGLHGV 109 Query: 113 G----------------------EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 L L + + K +A + + + P Sbjct: 110 DPTTGRKLDDDEGARYPLALLVKRYLGLDISEDK--KNPLAWRLRYGELDGVPVERWP-- 165 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPL------------SSKEQELWYLDQTINDRGYC 198 EY K D T ++F + E + ++ + G Sbjct: 166 ----VEAVEYPKCDARYTIDVFFKQEEQARDVTNGGNLHAEPDQMRAAFVLHLASIWGLR 221 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET- 257 + L + V+ E + ++ S+ ++L + G + + Sbjct: 222 TNGVAVAELRKRVEAEWQQNRIRFQAAGIFRADGSKDTKRLAALVTAAYGGNPPYTAPSA 281 Query: 258 --------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T + L P + + L+ + ++ L + Sbjct: 282 RYPDGQIATDRDTL--LGSGDPLLED-LGKSGKVDKYKSTYLDVVEAGVS----LPINPR 334 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 F T R S Q LP+ +R Sbjct: 335 FNVLVSTTRVSSD---YQQLPQKG-----------------------------GIREVHE 362 Query: 370 ASEGKKLVVADLAGIEARVL----AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 A G D G+E R + W G A +G D++ A Sbjct: 363 ARPGYVFCSVDYGGLELRTMAQRAIWELGYSKMADALNSGLDVHTLAAAEFLG---ESYA 419 Query: 426 KDQRAIGKVMELALGYQGGAKAF----QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 + +A+ ++ AK + L N A + + D Sbjct: 420 GLLAKVKAKDPVAVAFRQLAKILNFGKGGGMTGGSLVYNARAKDRVSFCLLAKRADMCGV 479 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 R + + + + W +L + + G Sbjct: 480 ERVPVTVQRKPKMVCRTCVEVARELDEKWLAAWPE----QRDLQRKAKSLTYGGGVADVM 535 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 R T ++ Sbjct: 536 ----------------------------IPGANILRGACGYT------------QILNTP 555 Query: 602 VQAVSRDILAEGMMNATKA----------GYDIVLTVHDEIVCE--------TPDTDEFN 643 Q + GM ++ G +VL VHDE++ E D E Sbjct: 556 FQGLGAVGCKLGMWRVSREMYTVRSSPLFGSRLVLNVHDELISELLADDQQRLHDAAERK 615 Query: 644 ASMLYHLM-TSNPSWAKGL 661 A ++ M + P A + Sbjct: 616 ALLMRDAMKETTPDLAAAV 634 >gi|302535235|ref|ZP_07287577.1| LOW QUALITY PROTEIN: DNA polymerase I [Streptomyces sp. C] gi|302444130|gb|EFL15946.1| LOW QUALITY PROTEIN: DNA polymerase I [Streptomyces sp. C] Length = 559 Score = 78.6 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 87/312 (27%), Gaps = 77/312 (24%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P + H P + P + +R V+A G +LVVAD +E RVL Sbjct: 277 PGRPLPPRVHPRRHPHRPLGHPTAAGPCRS-PKVIRRAVVADPGWRLVVADADQMEPRVL 335 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++ + ++ EDLY + F+ K+ L Y Sbjct: 336 AAISRDPAFMEVAGRPEDLYTAVSRQGFSGDRD--------KAKIAVLGAVY-------- 379 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 T+G L A L Sbjct: 380 --GQTSGDGLKNLAAL-------------------------------------------- 393 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 R++ R ++ + E G+ + R P + + + G Sbjct: 394 -RRRFPRAVAYVDD----AARAGEEGRLVRTWLGRTCPPPVGAAEADEAGIPQEQGPERA 448 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD--ILAEGMMNATKAGYD--IV 625 + + TR G +VQ + D +L + AG +V Sbjct: 449 ---DSAETGWTPSYASANTRAR--GRFTRNFVVQGSAADWALLMLAALRQATAGMRAELV 503 Query: 626 LTVHDEIVCETP 637 HDE++ P Sbjct: 504 FFQHDEVIVHCP 515 >gi|256375220|ref|YP_003098880.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827] gi|255919523|gb|ACU35034.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827] Length = 555 Score = 78.6 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 59/494 (11%), Positives = 114/494 (23%), Gaps = 138/494 (27%) Query: 190 QTINDRGYCVDVALAHTLNQIVD----------VERTKLDQELESLTYGLVSSSRCLEKL 239 + G + L + +L + + G + Sbjct: 172 AEMTHFGLPWRRDVHEELLADLLGPRTAPGVRPRRLAELADRITAAFGGRAVNPDNPA-S 230 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 F G+ + + + P A + +R V + ++A Sbjct: 231 IVRAFAREGVDVPSARAWVIKEL------DHPAAEPLLAY-KELARLWVAHGWSWLDAWV 283 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 +DGR R +G +GRW+ +PR Sbjct: 284 ADGRFRPDY-VVGGVVSGRWATRGGAALQIPR---------------------------- 314 Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R+ V A G +LV AD A +E RVLA ++ ++ + + Sbjct: 315 ---SLRTAVRADPGWRLVAADAAQLEPRVLAALSRDRRLAEVAGEDDLYTTLAADSFHG- 370 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 R K+ L+ Y G + ++ + + DA Sbjct: 371 --------DRGQAKIAMLSAMYGGTSGGAAELLAVL----------------RRRFPDAV 406 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 + + +G +AW + + + +A Sbjct: 407 GYVERAAREGERGGVVRSRLGRTSPAPSQAWHEA-------TGSADDGEDALRRSQRAAR 459 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 R V + +L + R Sbjct: 460 EWGRFTRNFVVQASAADWTAALLGALRR-------------------------------- 487 Query: 600 NIVQAVSRDILAEGMMNATKA--GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS 656 + +V HDE++ P + + Sbjct: 488 ----------------RLHERAPEAHLVFFQHDEVLVHCPAGLAEVVCAEVVAAGEEASR 531 Query: 657 WAKG-----LPLKA 665 PLKA Sbjct: 532 LVFEGTDVRFPLKA 545 >gi|159476518|ref|XP_001696358.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii] gi|158282583|gb|EDP08335.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii] Length = 894 Score = 78.2 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 84/313 (26%), Gaps = 56/313 (17%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R+ +A G+ LV AD + IE R+LA ++ + Sbjct: 616 RAAFVAPAGRLLVSADYSQIELRLLAHLS------------------------------I 645 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 + R K + A+ Y + + S G+ + L +S + ++F Sbjct: 646 SSRDREQAKRIIYAIIYGMSPQGLAQALSDHGVEVKEATAL--RSSFLRHFAGVQSFITS 703 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + H + + S L E + +I G A K Sbjct: 704 SLHHARRHGFITTGLLGRRRPISGL----ASNDVRLRAEAERKVVNSIVQGSAADLIKMA 759 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 + + G T T Sbjct: 760 MTMWGTYSHPPAAGANEQQKQKQPQPQQTGGAAGAATGTRAAATDAAPQLPPGCPPP--- 816 Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCET---PDTDEFNASMLYHLMTSNPSWAKGL 661 + D++ ++HDEI+ E P+ + + + LM A + Sbjct: 817 ------------LEEGCVDLIGSIHDEILFECDARPEVLQRLVAAVRCLMCGVV--ALDV 862 Query: 662 PLKAEGYESKRYR 674 PL + + + Sbjct: 863 PLCVKLSVGQSWG 875 >gi|296270208|ref|YP_003652840.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833] gi|296092995|gb|ADG88947.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833] Length = 538 Score = 78.2 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 53/336 (15%), Positives = 90/336 (26%), Gaps = 77/336 (22%) Query: 187 YLDQTINDRGYCVDVALAHTLNQIVD----------VERTKLDQELESLTYGLVSSSRCL 236 + + G + L + L E+ + V + Sbjct: 165 LIAAEMRHHGMPWRQDVHDALLTELLGPRPAPGMRPARLQALADEISAAFGHPV-NPDSP 223 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L F G+ L +RV P + SR Sbjct: 224 QQLLK-AFKAAGIDLPSTRSHVLERV------DHPAVKPLLEY-KELSRLHSFYGWAWAA 275 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 GR +G +GRW+ +P+ Sbjct: 276 QWVRGGRFHPEY-VVGGVVSGRWATSGGGALQIPK------------------------- 309 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R V+A +G LVVAD A +E RVLA M+G+ L Sbjct: 310 ------VMRRAVVADQGWTLVVADAAQLEPRVLAAMSGD----------AALARAAGEAD 353 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 A A+ R K+ L+ Y G + ++ + + + Sbjct: 354 LYSALAEAFGGSRESAKIAMLSAMYGGTSGDAPRLLAVM----------------RQRFP 397 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 A F E + ++G C + WR+ Sbjct: 398 RAYAFVEEAARAGEEGRVVRSWLGRTCPPPSQRWRE 433 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 40/156 (25%), Gaps = 31/156 (19%) Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 R+ RQ+ R + +A E G+ + + R P Sbjct: 379 GGTSGDAPRLLAVMRQRFPRAYAF---VEEAAR-AGEEGRVVRSWLGRTCPP-------- 426 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD--ILAEGM 614 PS R + + R G +VQA + + + + Sbjct: 427 ------PSQRWRELT------AGPDGGRVARER----GRFTRNFVVQATAAEWALTLLAV 470 Query: 615 MN-ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649 + +V HDE++ P Sbjct: 471 LRGLLPDPARLVFFQHDEVMVHCPLHQAERVRAAVE 506 >gi|297201366|ref|ZP_06918763.1| DNA polymerase I [Streptomyces sviceus ATCC 29083] gi|297147869|gb|EFH28770.1| DNA polymerase I [Streptomyces sviceus ATCC 29083] Length = 563 Score = 78.2 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 60/418 (14%), Positives = 107/418 (25%), Gaps = 146/418 (34%) Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 ++T + + S P + + R V + ++ DGR R G Sbjct: 239 KVKSTRRWEIQSL--DHPAVKPLVEY-KKLYRIWVAHGWSWLQDWVRDGRFRPEF-LAGG 294 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGRW +P+ +R V+A G Sbjct: 295 TVTGRWVTHGGGALQIPK-------------------------------VIRRAVVADPG 323 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 +LVVAD +E RVLA ++ + ++ DLY + + RA K Sbjct: 324 WRLVVADADQMEPRVLAAISRDPGLMEVAGRESDLYQSVS--------DRAFSGDRAQAK 375 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + L Y T+G L A L Sbjct: 376 LAVLGAVY----------GQTSGDGLKNLAAL---------------------------- 397 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 R++ + ++ + E G+ + R P Sbjct: 398 -----------------RRRFPKAVAYVDD----AARAGEEGRLVRTWLGRTCPPAAGAG 436 Query: 554 DKNNLILM--LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV------ 605 D + P+G+ ++ TR G +VQ Sbjct: 437 DAEEAGIPQDDPAGQ-----PASGEDGWVPGYASTNTRAR--GRFARNFVVQGSAADWAL 489 Query: 606 -------------SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYH 649 + + +V HDE++ P + + + Sbjct: 490 LLLAALRQACAGMAAE---------------LVFFQHDEVIVHCPKEEAEAVVAAIRE 532 >gi|163851920|ref|YP_001639963.1| 3'-5' exonuclease [Methylobacterium extorquens PA1] gi|163663525|gb|ABY30892.1| 3'-5' exonuclease [Methylobacterium extorquens PA1] Length = 209 Score = 78.2 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 58/205 (28%), Gaps = 37/205 (18%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ P+ L L + Sbjct: 25 IAIDTET--------LGLNPHRD--RLCVVQVSRGDGSADVVQIRPGDPAPERLMAVLAD 74 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119 V + H + F+ VL F + CT + ++ LK V L + Sbjct: 75 AGVVKIFHFARFDLAVLFNAFG--VMPAPVYCTKIASKLARTYTDRHGLKDVVRELVGVD 132 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++ + + Y DV +RL+ + Sbjct: 133 LSKQQQSSDW-------------GAGTLSQAQID------YAASDVLHLHAARERLDAML 173 Query: 180 --SKEQELWYLDQTINDRGYCVDVA 202 E+ +D+A Sbjct: 174 AREGRTEMAQACFDFLPTRSKLDLA 198 >gi|218530671|ref|YP_002421487.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4] gi|218522974|gb|ACK83559.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4] Length = 209 Score = 78.2 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 59/205 (28%), Gaps = 37/205 (18%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ P+ LK L + Sbjct: 25 IAIDTET--------LGLNPHRD--RLCVVQVSRGDGSADVVQIRPSDPAPERLKAVLAD 74 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119 V + H + F+ VL F + CT + ++ LK V L + Sbjct: 75 AGVVKIFHFARFDLAVLFNAFG--VMPAPVYCTKIASKLARTYTDRHGLKDVVRELVGVD 132 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++ + + Y DV +RL+ + Sbjct: 133 LSKQQQSSDW-------------GAATLSQAQID------YAASDVLHLHAARERLDAML 173 Query: 180 --SKEQELWYLDQTINDRGYCVDVA 202 E+ +D+A Sbjct: 174 AREGRTEMAQACFDFLPTRSKLDLA 198 >gi|294085087|ref|YP_003551847.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322] gi|292664662|gb|ADE39763.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Candidatus Puniceispirillum marinum IMCC1322] Length = 418 Score = 78.2 bits (191), Expect = 5e-12, Method: Composition-based stats. Identities = 55/503 (10%), Positives = 108/503 (21%), Gaps = 134/503 (26%) Query: 168 TREIFKRLEPLSSKEQ---ELWYLDQTINDRGYCVDVALAHTLNQ---IVDVERTKLDQE 221 + + + RG +D + + + Sbjct: 1 MLAHWPVGPMDLDQVLTRGRYVATVALMEHRGVPIDTTTLGLMRDNWHDFKQALIEKTDQ 60 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFN 278 + L + L Q PQ ++ Sbjct: 61 AYGVYDKGSFRV----HLFEHYLGAENIAWPRLASGELQLDRDTFKMMALRHPQLAELRE 116 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R + +KL + DGR R L + +TGR N P ++ Sbjct: 117 LRKTLAEMREIKLT-----VGRDGRNRTLLSPFNS-KTGR---------NQPSTTK---- 157 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 + + RS + G L D + E + A ++G+ Sbjct: 158 -----------------FIFGLPAWARSLIKPEPGTALAYLDFSSQEIAIAACLSGDDAL 200 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +A+ +G+ + A GL Sbjct: 201 WQAYASGDPYI----------------------------------------QFAIDAGL- 219 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 +++ A + + + E + + + + Sbjct: 220 -APVGATKESHKAERDACKVIMLGVQYGMSAYGMGQKASLHVLEAEDLLQRHKDVY---L 275 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 W + + + + + GR DV N Sbjct: 276 TFWRWAERNVNAGLAGVELHTVFGWK---------------IRAGKGR-----DVKEN-- 313 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 +QA ++L + + + VHD I+ E P Sbjct: 314 -----------------TFLNWPMQANGAEMLRLAYIALEEESIVMCAPVHDAILIEAPL 356 Query: 639 TDEFN-ASMLYHLMTSNPSWAKG 660 H M W G Sbjct: 357 DAIDQHVERATHEMQKASGWVLG 379 >gi|258541780|ref|YP_003187213.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01] gi|256632858|dbj|BAH98833.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01] gi|256635915|dbj|BAI01884.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03] gi|256638970|dbj|BAI04932.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07] gi|256642024|dbj|BAI07979.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22] gi|256645079|dbj|BAI11027.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26] gi|256648134|dbj|BAI14075.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32] gi|256651187|dbj|BAI17121.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654178|dbj|BAI20105.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12] Length = 217 Score = 78.2 bits (191), Expect = 5e-12, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 57/187 (30%), Gaps = 42/187 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC------VHDPVMPQVL 57 + +D ET G+ + + + L D L P L Sbjct: 27 VAVDTET--------MGLNPHRD--RLCLVQLSAGDGTAHLVQIIPTSLGGKGYDCP-NL 75 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGE 114 K L + +T + H + F+ +L+ + + +CT + AR L A+ Sbjct: 76 KRVLADPSITKIMHFARFDVAILQHALGITVSP--VVCTKIAARLVRTFTDRHGLAALCR 133 Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L + K ++ + A+ K E Y DV ++ Sbjct: 134 DMLGVELSKQQQTSDWGAKELKPEQ-------------------LAYAASDVLYLHALWD 174 Query: 174 RLEPLSS 180 ++ L Sbjct: 175 KMSALLD 181 >gi|33300830|ref|NP_877458.1| putative DNA directed DNA polymerase [Pseudomonas phage phiKMV] gi|195546662|ref|YP_002117743.1| DNA directed DNA polymerase [Pseudomonas phage PT5] gi|195546724|ref|YP_002117802.1| putative exonuclease [Pseudomonas phage PT2] gi|33284801|emb|CAD44210.1| putative DNA directed DNA polymerase [Enterobacteria phage phiKMV] gi|158187623|gb|ABW23100.1| DNA directed DNA polymerase [Pseudomonas phage PT5] gi|165880733|gb|ABY70988.1| putative exonuclease [Pseudomonas phage PT2] Length = 807 Score = 77.8 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 40/428 (9%), Positives = 95/428 (22%), Gaps = 83/428 (19%) Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL--------------NTLVEAMNSDG 302 +T L + +K +A ++ + +++ ++ DG Sbjct: 399 STSGDALKALEKQGFEAAKLLMRLAELHKDNSSFYITHTYNKDGTIKDTKGMLQYVDDDG 458 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 + +L A+ T R S Q LP E Sbjct: 459 IIHHSLN-TTATATTRLSSSRPNLQQLPSKDEDDPEA---------------------GS 496 Query: 363 CVRSCVIASEGK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 V+ ++ G + D +E +LA ++ ++ L G D++ Sbjct: 497 RVKEMFVSRFGADGMIGETDYTALEVVMLAALSKDRNLLAKLMAGTDMH----------- 545 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 + F + + + + Sbjct: 546 -------LYRLAGKHN-------NWNGF-DYDQLVAIKKDPNHPWHGRMMQARKNIKPKA 590 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT----IENGK 536 F + A + + + E T + Sbjct: 591 FSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIAFRQIVRDSAEATSLVMYKAED 650 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 + A ++ + P G +R T Sbjct: 651 QMPAGAFSEMGPDGNWRQYRRGFWQAPGGTCYSFRQQERWDKEQRKTVMDFKDTQI---- 706 Query: 597 LTENIVQAVSRDILAEGMMNA-----TKAGY----DIVLTVHDEIVCETPDTDEFNASM- 646 Q + ++ + + G+ ++ VHD + + + Sbjct: 707 -ANYWNQGEAGFMMTVSVGRIFRWMLHRPGFMVTEFLINNVHDAVYTDCHKDTAAEVNKG 765 Query: 647 LYHLMTSN 654 + +M Sbjct: 766 VRDIMADA 773 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 70/280 (25%), Gaps = 56/280 (20%) Query: 1 MATL-FIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVL 57 M T+ +D ET S G D +++ + D D + Sbjct: 1 MTTIRILDLETESH---EHKGRKASPFDPRNYIVMAGWRDD------VDGKVGQKVEHRF 51 Query: 58 K--EALENTDVTI---------VAHNSYFERTVL-----KACFNLDIPIHRWICTLVLAR 101 + E+ + VAHN+ FE R CT Sbjct: 52 RSRAEAEDPNNRWFNLDGVDVIVAHNAMFESNWFFTRYRDEYLAFLRRGGRVWCTQQAEY 111 Query: 102 SNG----LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 L AL + + K++ K L ++ + Sbjct: 112 LLSHQTWLYPALDELAPKYG-GTHKVDGIKMLWD----------QGVLTSEMDQDLLSEY 160 Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI---------NDRGYCVDVALAHTLN 208 GD+ T +F + G VD+ +A + Sbjct: 161 LSGPCGDIENTALVFYGQLMKLQARGMWAGYLERCEALIGFSAMECAGLKVDLEVAKVNH 220 Query: 209 QIVDVERTKLDQELESLT----YGLVSSSRCLEKLKTWLF 244 E ++ EL+ L L + WL+ Sbjct: 221 AKQLEEVAGIEAELKKLMPDFPEYFEFKYTSLYHMSAWLY 260 >gi|167600464|ref|YP_001671963.1| DNA polymerase [Pseudomonas phage LUZ19] gi|161168327|emb|CAP45491.1| DNA polymerase [Pseudomonas phage LUZ19] Length = 807 Score = 77.8 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 40/428 (9%), Positives = 95/428 (22%), Gaps = 83/428 (19%) Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL--------------NTLVEAMNSDG 302 +T L + +K +A ++ + +++ ++ DG Sbjct: 399 STSGDALKALEKQGFEAAKLLMRLAELHKDNSSFYITHTYNKDGTIKDTKGMLQYVDDDG 458 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 + +L A+ T R S Q LP E Sbjct: 459 IIHHSLN-TTATATTRLSSSRPNLQQLPSKDEDDPEA---------------------GS 496 Query: 363 CVRSCVIASEGK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 V+ ++ G + D +E +LA ++ ++ L G D++ Sbjct: 497 RVKEMFVSRFGADGMIGETDYTALEVVMLAALSKDRNLLAKLMAGTDMH----------- 545 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 + F + + + + Sbjct: 546 -------LYRLAGKHN-------NWNGF-DYDQLVAIKKDPNHPWHGRMMQARKNIKPKA 590 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT----IENGK 536 F + A + + + E T + Sbjct: 591 FSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIAFRQIVRDSAEATSLVMYKAED 650 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 + A ++ + P G +R T Sbjct: 651 QMPAGAFSEMGPDGNWRQYRRGFWQAPGGTCYSFRQQERWDKEQRKTVMDFKDTQI---- 706 Query: 597 LTENIVQAVSRDILAEGMMNA-----TKAGY----DIVLTVHDEIVCETPDTDEFNASM- 646 Q + ++ + + G+ ++ VHD + + + Sbjct: 707 -ANYWNQGEAGFMMTVSVGRIFRWMLHRPGFMVTEFLINNVHDAVYTDCHKDTAAEVNKG 765 Query: 647 LYHLMTSN 654 + +M Sbjct: 766 VRDIMADA 773 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 70/280 (25%), Gaps = 56/280 (20%) Query: 1 MATL-FIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVL 57 M T+ +D ET S G D +++ + D D + Sbjct: 1 MTTIRILDLETES---YEHKGRKASPFDPRNYIVMAGWRDD------VDGKVGQKVEHRF 51 Query: 58 K--EALENTDVTI---------VAHNSYFERTVL-----KACFNLDIPIHRWICTLVLAR 101 + E+ + VAHN+ FE R CT Sbjct: 52 RSRAEAEDPNNRWFNLDGVDVIVAHNAMFESNWFFTRYRDEYLAFLRRGGRVWCTQQAEY 111 Query: 102 SNG----LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 L AL + + K++ K L ++ + Sbjct: 112 LLSHQTWLYPALDELAPKYG-GTHKVDGIKMLWD----------QGVLTSEMDQDLLSEY 160 Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI---------NDRGYCVDVALAHTLN 208 GD+ T +F + G VD+ +A + Sbjct: 161 LSGPCGDIENTALVFYGQLMKLQARGMWAGYLERCEALIGFSAMECAGLKVDLEVAKVNH 220 Query: 209 QIVDVERTKLDQELESLT----YGLVSSSRCLEKLKTWLF 244 E ++ EL+ L L + WL+ Sbjct: 221 AKQLEEVAGIEAELKKLMPDFPEYFEFKYTSLYHMSAWLY 260 >gi|88856344|ref|ZP_01131003.1| DNA polymerase I [marine actinobacterium PHSC20C1] gi|88814428|gb|EAR24291.1| DNA polymerase I [marine actinobacterium PHSC20C1] Length = 523 Score = 77.5 bits (189), Expect = 6e-12, Method: Composition-based stats. Identities = 88/538 (16%), Positives = 140/538 (26%), Gaps = 153/538 (28%) Query: 161 CKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 D T L SS QE + + + G+ +DV L + + Sbjct: 115 AARDAVATARFVVALPDDASAATRAAVWSSCAQEQLWRSRQLE--GHPIDVELLNRELAM 172 Query: 211 VDVERTKLDQEL-ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS---N 266 D R EL LT ++R + + WL ++ + R L Sbjct: 173 ADAHRVAAIAELGIDLTDSA--TARGSKAIHAWLAPVGVFLVDAKGAPSLSRDLYDRVSI 230 Query: 267 KKLTPQAIQVFNNRMRASRSA-VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + + R S ++ V KL + A+N +GR TL A RTGR + Sbjct: 231 PETDEAQSRWKKFREVRSVASRVGKLREIQRALN-NGRTHSTLYVRRA-RTGRGAVTGPA 288 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+ R +R ++A G+ LV D + +E Sbjct: 289 LQNIHRG-------------------------------LRPLLMAPVGEVLVSLDFSQME 317 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ----VTKDQRAIGKVMELALGY 441 RV A ++ + L A E+ DLY R + R K + L + Y Sbjct: 318 PRVSAGLSQDPDLLAALES-GDLYAELSRRIWGAEADDADGKPNPLLRDRAKTLMLGIFY 376 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 G A Sbjct: 377 GEGKNAL--------------------------------------------GRALGIEPK 392 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 + + + + L Sbjct: 393 DAKVLLDSVWAAFPGLQAYDLWLQSEVRAGR--------------------------PAF 426 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 GR + G N VQA S DI + Sbjct: 427 TQDGRPVPLPKRGL-------------------HAALNNRVQAESADIFWAAVARVAAVL 467 Query: 622 YD--IVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA-EGYESKRYRK 675 + L VHDE+V P A ++ M + +G+P+ + +RK Sbjct: 468 GPKSLFLGVHDELVVSVPANRSEWARIVLEREMNTVF---RGVPVTGTAVVIGRSWRK 522 >gi|255326718|ref|ZP_05367794.1| DNA-directed DNA polymerase [Rothia mucilaginosa ATCC 25296] gi|255295935|gb|EET75276.1| DNA-directed DNA polymerase [Rothia mucilaginosa ATCC 25296] Length = 668 Score = 77.5 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 59/443 (13%), Positives = 117/443 (26%), Gaps = 109/443 (24%) Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKK 268 + +L ++++ + + + + L L G+ ++ ++ + + +K Sbjct: 299 QKMQELAEQIQRMLFMPSLNPDSPQDLLRALQSA-GVSVKSTRSWELKSWADAIPAQRQK 357 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + + R T + S+G R L+ GA+ TGRW Sbjct: 358 RWAMIDPILRY-KKLYRIWTANGWTWADTWVSEGAFRPHLEVGGAA-TGRWGASGGGALQ 415 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 LP +R V A EG+ L V D + IE R+ Sbjct: 416 LP-------------------------------AEIRQAVQAPEGQVLTVTDGSQIEPRI 444 Query: 389 LAWMAGEQWKLKAFETGEDLY-VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 LA ++ ++ A + + AR V + + KV LA+ Y G + Sbjct: 445 LAALSRDEALASAGRGADLYAGIAELARMKGVGLTERSH-----AKVGMLAIMYGGRSGE 499 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + + A +F F+G V Sbjct: 500 IGALLP----------------HVAALFPQAMDFTERAARIGEAGGQVTTFLGRTSPPVD 543 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + +R+ + +A +G+ + + + L S R Sbjct: 544 ERFREIVAD-RSSPAAESRAVSSARAHGRMTRNFIVQGTAAEWALCWMGAVRSRLLSERI 602 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 IV Sbjct: 603 FGMP------------------------------------------------MRTRIVYF 614 Query: 628 VHDEIVCETPDTDEFNASMLYHL 650 +HDE++ P+ + + Sbjct: 615 LHDELLLCGPELEADRVERIVRE 637 >gi|154333792|ref|XP_001563151.1| mitochondrial DNA polymerase I protein B [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060163|emb|CAM45570.1| putative mitochondrial DNA polymerase I protein B [Leishmania braziliensis MHOM/BR/75/M2904] Length = 1419 Score = 77.5 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 43/380 (11%), Positives = 92/380 (24%), Gaps = 109/380 (28%) Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ DGR+ + + A+ T R QN+P+ +S Sbjct: 1062 LAILHRDGRVHQHI-DMTATTTSRTVSAYPSCQNIPKDDKS------------------- 1101 Query: 355 DPLQIISDCVRSCVIASEGK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 VR ++ G + V D + +E VLA + + G D +V Sbjct: 1102 --------SVRRLFVSRFGSQGRCVEVDYSQLEIVVLAILCNDANLTHDLNHGVDFHVKR 1153 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 A + + YQG + K Sbjct: 1154 AAFFSGLPYDE----------------IYQGYKRNVPKYVK------------------L 1179 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 +F R P E + + + +++ + + Sbjct: 1180 RRTAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEAYPGIAQFHRTIRSVALRPN 1239 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 G +P+G + + Sbjct: 1240 NPGLPTSFI------------------AEMPTGLRMSL---------------RTRDVVL 1266 Query: 593 YGGKLTENIVQAVSRDILAEGMM----------NATKAGYDIVLTVHDEIVCETPDTDE- 641 + +Q + LA+ M+ + K ++ VHD + + Sbjct: 1267 NLPPIKNYPIQGYGAE-LAQMMLGRLFRHFMRRDFYKNRAFLINFVHDSVWMDCHVDVLR 1325 Query: 642 FNASMLYHLMTSNPSWAKGL 661 + ++ S + + Sbjct: 1326 ECVTDTCRILGSAHEYVPKV 1345 >gi|114797270|ref|YP_758935.1| putative exonuclease [Hyphomonas neptunium ATCC 15444] gi|114737444|gb|ABI75569.1| putative exonuclease [Hyphomonas neptunium ATCC 15444] Length = 204 Score = 77.5 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 61/206 (29%), Gaps = 36/206 (17%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 + +D E G+ ++ + L D L D P LK L Sbjct: 20 VIAVDTE--------AMGLNAMRDN--LTLVQVSSGDGTAHLVQLTRDYDCP-NLKALLT 68 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKL 118 + V + H + F+ ++K + CT + +R LK V E + Sbjct: 69 DPKVLKIFHFARFDVVMMKRWMGITCAP--IWCTKIASRLARTYTDRHGLKDVAREVAGV 126 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 K ++ + + + +Y DV +I LE + Sbjct: 127 DMSKAQQSSDW-------------GQDKLTDAQI------QYAASDVLYLHQIKAGLEAM 167 Query: 179 SSKEQELWYLDQTINDRGYCVDVALA 204 +E L + D+ LA Sbjct: 168 LEREGRLELAQACFDFLPIRADLDLA 193 >gi|323136907|ref|ZP_08071987.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242] gi|322397668|gb|EFY00190.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242] Length = 204 Score = 77.5 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 52/180 (28%), Gaps = 33/180 (18%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 + ID ET + D + + D EL + L + L Sbjct: 19 IVAIDTETLGLN---------HRRD-RLCVVQLSIGDGDAELVQIAKGQTQAENLVKLLV 68 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119 + V + H + F+ +L F + CT + ++ LK + L Sbjct: 69 DPKVLKLFHFARFDMGILAKTFG--VMPAPVYCTKIASKLTRTYTDRHGLKDLAREL--- 123 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K + + ++A Y DV ++ ++L+ + Sbjct: 124 ---------AGVEISKQQQSSDWGAATLTDAQQA------YAASDVLYLHQLKEKLDAML 168 >gi|115522454|ref|YP_779365.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53] gi|115516401|gb|ABJ04385.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53] Length = 204 Score = 77.5 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 35/180 (19%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ LK+ L + Sbjct: 20 VAIDTET--------MGLNPHRD--RLCVVQLSNGDGSADVVQIPLGHTEAPNLKKLLGD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLS 119 VT + H + F+ + L + CT + +R LK + E L + Sbjct: 70 PAVTKIFHFARFDLSALSNALG--VMPQPIYCTKIASRLCRTYTDRHGLKDLVREVLGID 127 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++ + +N + + A Y DV + RL+ + Sbjct: 128 LSKQQQSSDW-------------GAQNLTDAQLA------YAASDVLHLHALRARLDAML 168 >gi|291571594|dbj|BAI93866.1| ribonuclease D [Arthrospira platensis NIES-39] Length = 207 Score = 77.5 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 52/186 (27%), Gaps = 26/186 (13%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L ID ET G+ + + + L V LK LE Sbjct: 25 LAIDTET--------MGLLPWRD--RLCLVQICDPKGQVVAIRIERGQREAPNLKTLLET 74 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 T++ V H + F+ L+ +++ CT + ++ + Sbjct: 75 TNILKVFHFARFDVATLRHNLGIEVNP--VFCTKIASK----------LARTY----TGK 118 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 K+LI E + + N Y DV +L + +E+ Sbjct: 119 HGLKDLIMELEGVELDKSSQSSDWGNAANLSENQLNYAANDVRYLLSAKDKLNQMLKREE 178 Query: 184 ELWYLD 189 Sbjct: 179 RWDLAL 184 >gi|283457405|ref|YP_003361981.1| DNA polymerase I [Rothia mucilaginosa DY-18] gi|283133396|dbj|BAI64161.1| DNA polymerase I [Rothia mucilaginosa DY-18] Length = 668 Score = 77.1 bits (188), Expect = 8e-12, Method: Composition-based stats. Identities = 59/443 (13%), Positives = 115/443 (25%), Gaps = 109/443 (24%) Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKK 268 + +L ++++ + + + + L L G+ ++ ++ + + K Sbjct: 299 QKMQELAEQIQRMLFMPSLNPDSPQDLLRALQSA-GVSVKSTRSWELKSWADAIPAQRDK 357 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + + R T + S+G R L+ GA+ TGRW Sbjct: 358 RWALIDPILRY-KKLYRIWTANGWTWADTWVSEGAFRPHLEVGGAA-TGRWGASGGGALQ 415 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 LP +R V A EG+ L V D + IE R+ Sbjct: 416 LP-------------------------------AEIRQAVQAPEGQVLTVTDGSQIEPRI 444 Query: 389 LAWMAGEQWKLKAFETGEDLY-VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 LA ++ ++ A + + AR V + + KV LA+ Y G + Sbjct: 445 LAALSRDEALASAGRGADLYAGIAELARLKGVGLTERSH-----AKVGMLAIMYGGRSGE 499 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + + A F F+G V Sbjct: 500 IGALLP----------------HVAALFPQAMEFTERAARIGEAGGQVTTFLGRTSPPVD 543 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + +R+ + +A +G+ + + + L S R Sbjct: 544 ERFREIVAD-RSSPAAESRAVSTARAHGRMTRNFIVQGTAAEWALCWMGAVRSRLLSERI 602 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 IV Sbjct: 603 FGMP------------------------------------------------MRTRIVYF 614 Query: 628 VHDEIVCETPDTDEFNASMLYHL 650 +HDE++ P+ + + Sbjct: 615 LHDELLLCGPELEADRVERIVRE 637 >gi|218779802|ref|YP_002431120.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01] gi|218761186|gb|ACL03652.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01] Length = 388 Score = 77.1 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 66/194 (34%), Gaps = 35/194 (18%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 + +D E S + Y E C++ + + D + D + + L L Sbjct: 35 KCIAVDLEADS--------MFHYQEKACLLQI---TSNGLNYIVDPLCDCDV-KALAPIL 82 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGE-ALKLS 119 EN ++ + H + ++ L F +++ H T V AR G P L + E + Sbjct: 83 ENDEIQKIFHGADYDVRCLFRDFGIEL--HNLFDTQVAARFLGEPQTGLAPLLESRFGVQ 140 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 +K + +N + Y D E+ + L+ Sbjct: 141 LEKKYQ------------------KKNWSLRPLPPEMMA-YAANDTVHLLELAEILKKEL 181 Query: 180 SKEQELWYLDQTIN 193 ++ L+++++ Sbjct: 182 VEKDRLFWVEEECE 195 >gi|168702959|ref|ZP_02735236.1| hypothetical protein GobsU_25749 [Gemmata obscuriglobus UQM 2246] Length = 209 Score = 77.1 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 67/209 (32%), Gaps = 37/209 (17%) Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 L + ++K F + G L T + + + A+ Sbjct: 36 LPGRETRNWDSPSQVKAA-FAQLGFAL----AATDDD--DTLAGIAHPLGALVREYRAAA 88 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + VE DG + + LGA GR S Q +PR S Sbjct: 89 KRLSTYGRVWVEKHVQDGAVLPSWNQLGAES-GRMSCSDPNLQQVPRGSAH--------- 138 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 R C A LV AD + E R+ A +A E+ + A+ Sbjct: 139 --------------------RRCFTARPEHPLVKADYSQTELRIAAKVAREKVMMAAYAD 178 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 G DL+ T AR N VTKD R + K Sbjct: 179 GRDLHALTAARVLNKDEDAVTKDDRQLAK 207 >gi|284053636|ref|ZP_06383846.1| 3'-5' exonuclease [Arthrospira platensis str. Paraca] Length = 209 Score = 77.1 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 52/186 (27%), Gaps = 26/186 (13%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L ID ET G+ + + + L V LK LE Sbjct: 27 LAIDTET--------MGLLPWRD--RLCLVQICDPKGQVVAIRIERGQREAPNLKTLLET 76 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 T++ V H + F+ L+ +++ CT + ++ + Sbjct: 77 TNILKVFHFARFDVATLRHNLGIEVNP--VFCTKIASK----------LARTY----TGK 120 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 K+LI E + + N Y DV +L + +E+ Sbjct: 121 HGLKDLIMELEGVELDKSSQSSDWGNAANLSENQLNYAANDVRYLLSAKDKLNQMLKREE 180 Query: 184 ELWYLD 189 Sbjct: 181 RWDLAL 186 >gi|241207041|ref|YP_002978137.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860931|gb|ACS58598.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 208 Score = 77.1 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 50/208 (24%), Gaps = 27/208 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET + + + D ++ + L LE+ Sbjct: 24 IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADIIRIAAGQKEARNLVALLED 73 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 + H F+ VL F + CT + +R + L K Sbjct: 74 PTHQKIFHYGRFDIAVLFHTFGVT--ATPVFCTKIASRLIR------TYTDRHGL---KD 122 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 + L K + + EY DV + +L ++ Sbjct: 123 NLKEMLDVDVSKAQQSSDWAAERLSPAQ------LEYAASDVLYLHALRDKLTERLIRDG 176 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIV 211 + + L + Sbjct: 177 RYDHATACFEFLPTRAKLDLLGWEEADI 204 >gi|17231283|ref|NP_487831.1| ribonuclease D [Nostoc sp. PCC 7120] gi|17132925|dbj|BAB75490.1| ribonuclease D [Nostoc sp. PCC 7120] Length = 209 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 58/202 (28%), Gaps = 26/202 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + +D ET + + + L + V LK+ LE Sbjct: 27 IAVDTETMGLLP----------QRDRLCLIQLCNPEGKVTAIRIAQGQTAAPNLKKLLEA 76 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 T+V V H + F+ L ++ + CT + ++ + + Sbjct: 77 TNVLKVFHFARFDVATLLHHLDIHVQP--IFCTKIASKLARTYTNRHGL----------- 123 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 K+L+ + E + + N Y DV ++L + +E+ Sbjct: 124 ---KDLVHELEQVELDKSAQGSDWGNAANLTEAQLSYAANDVRYLLSAQQKLVAMLKREE 180 Query: 184 ELWYLDQTINDRGYCVDVALAH 205 Q V + L Sbjct: 181 RWELAQQCFQVLPTIVSLDLLQ 202 >gi|218440719|ref|YP_002379048.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424] gi|218173447|gb|ACK72180.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424] Length = 209 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 63/204 (30%), Gaps = 34/204 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + +D ET G+ + + + L + V LK+ +E Sbjct: 27 IAVDTET--------MGLNPHRD--RLCLIQLCDPEGYVTAIRVTKGQQEAPKLKQLMEA 76 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119 +++T V H + F+ L+ F ++ CT + ++ LK++ L + Sbjct: 77 SNITKVFHFARFDVAQLRHHFGIE--TTPIFCTKIASKLARTYTSSHGLKSLVLELEGVE 134 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K + + + Y DV + ++L + Sbjct: 135 LDKTAQSSDWGN------------------ADKLSEEQLSYAANDVRYLLGVKEKLISML 176 Query: 180 SKEQELWYLDQTINDRGYCVDVAL 203 ++E + N V + L Sbjct: 177 NRENRMELARNCFNCLPVLVSLDL 200 >gi|281306681|ref|YP_003345487.1| hypothetical protein SBWP25_0022 [Pseudomonas phage phi-2] gi|271277986|emb|CBH51592.1| hypothetical phage protein [Pseudomonas phage phi-2] Length = 331 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 66/215 (30%), Gaps = 27/215 (12%) Query: 2 ATLFIDFET------RSPIDLTKCGICKYAEDVCVILFAFGFDDHP-VELWDC----VHD 50 L ID ET + G+ + E+ ++ + + P V D D Sbjct: 76 RILLIDIETAPILGYVWSLWKQNVGLNQIKEEWYILSYCAKWLGEPEVIYEDIRENPFCD 135 Query: 51 PVMPQVLKEALENTDVTIVAHNSY-FERT------VLKACFNLDIPIHRWICTLVLARSN 103 + L + + + I+ N F+ V+ ++ I T+++A+ Sbjct: 136 KPLLAGLWKLM-DEADIIIGQNGKAFDMPKIQARLVMNGYL--PPRPYKVIDTMLMAK-- 190 Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 + L+ + + L L+ + EAW EY Sbjct: 191 ---QQFRFTSNKLEWMTGESANLTTLTKSKHSKFPGFLLWAECLKKNPEAWDEMKEYNIP 247 Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198 DVT E++ +L P ++ + Sbjct: 248 DVTSMEELYLKLRPW-YQQHPNLAAYVESEEMLCP 281 >gi|197935875|ref|YP_002213711.1| hypothetical protein RSB1_gp22 [Ralstonia phage RSB1] gi|197927038|dbj|BAG70380.1| hypothetical protein [Ralstonia phage RSB1] Length = 264 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 74/218 (33%), Gaps = 34/218 (15%) Query: 2 ATLFIDFET-------RSPIDLTKCGICKYAEDVCVILFAFGF-DDHPVELWDCVH---- 49 L ID ET D + + + ++ F + V D + Sbjct: 5 KILTIDIETSPIGAHVWRLFD-ENVALNQITAEWTILSFCAKWLGSDEVIYEDTFNQRNK 63 Query: 50 --DPVMPQVLKEALENTDVTIVAHNS-YFER-TVLKACF--NLDIP-IHRWICTLVLAR- 101 D + + + + L + ++ N F+R + L P +R + T+++AR Sbjct: 64 RDDKRIVKRIHKLL-DEADIVIGQNVQKFDRRKINARFIMNGLTPPSPYRVVDTMLMARK 122 Query: 102 SNGLPSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + G S L+ + E L +K++ K L+ + EA EY Sbjct: 123 TFGFTSNKLEWLSEKLCTQYKKLKH---------KKFPGFELWAAFLAGNPEAQEEMREY 173 Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTI--NDRG 196 DV T E++ +L P + D+ R Sbjct: 174 NIVDVRSTEELYLKLRPWHPGHPNVNTYDEDAGDEMRC 211 >gi|157964505|ref|YP_001499329.1| ribonuclease D [Rickettsia massiliae MTU5] gi|157844281|gb|ABV84782.1| Ribonuclease D [Rickettsia massiliae MTU5] Length = 203 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 58/195 (29%), Gaps = 34/195 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L ID ET G+ + + + L F + L + LK L + Sbjct: 20 LAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFTNQDYTAPNLKALLLD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 + H + F+ +K ++D+ CT + ++ LK + L Sbjct: 70 KTRCKIFHFARFDLASIKKYLSIDLE--NIFCTKISSKLVRTYTDSHGLKDLCREL---- 123 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 L K + N EY DV ++ L+ + Sbjct: 124 --------LNINISKQQQSSYWGADNLS------SEQKEYAAKDVLYLHQLKDILQKMLL 169 Query: 181 KEQELWYLDQTINDR 195 KE + L Q I Sbjct: 170 KENR-YELAQDIFHF 183 >gi|51473610|ref|YP_067367.1| ribonuclease D [Rickettsia typhi str. Wilmington] gi|51459922|gb|AAU03885.1| ribonuclease D [Rickettsia typhi str. Wilmington] Length = 203 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 62/203 (30%), Gaps = 33/203 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + +D ET G+ + + + L F + L ++ LK L + Sbjct: 20 IAVDTET--------MGLNIHRD--KLCLLQFSNGNGAAHLVHFINQDYTAPNLKALLLD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 + H + F+ +K ++D+ CT + ++ LK + L Sbjct: 70 KTRCKIFHFARFDLASIKKYLSIDLE--NIFCTKISSKLVRTYTDSHGLKDLCREL---- 123 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 L K + N + EY DV ++ L+ + Sbjct: 124 --------LNINISKQQQSSYWGTDNLSLEQ------KEYAAKDVLYLHQLKDILQKMLF 169 Query: 181 KEQELWYLDQTINDRGYCVDVAL 203 +E L + V++ L Sbjct: 170 RENRLELAHEIFRFLPTRVNLDL 192 >gi|158345168|ref|YP_001522875.1| hypothetical protein PPLKA1_gp34 [Enterobacteria phage LKA1] gi|114796464|emb|CAK25002.1| hypothetical protein [Pseudomonas phage LKA1] Length = 343 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 66/202 (32%), Gaps = 35/202 (17%) Query: 3 TLFIDFETR------SPIDLTKCGICKYAEDVCVILFAFGFDDHP-VELWDCVHDPVMPQ 55 L ID ET + G+ + ++ ++ + + P V D + Sbjct: 90 ILSIDIETSPIEGRVWGLWKQNLGLNQITKEWNILSYCAKWLGDPNVIYSDLSQAENIAD 149 Query: 56 ------VLKEALENTDVTIVAHNSY-FERTVLKACF---NLDIP-IHRWICTLVLARSNG 104 L E L N +VA N F+ ++A F P R I T+++A+ Sbjct: 150 DSKLVAELYELL-NEADLVVAQNGKRFDLPKIQARFVMAGYKPPRPFRVIDTMLMAK--- 205 Query: 105 LPSALKAVGEALKLSSQKME--EGKELIARFCKGETHECLYDRN--KPNHREAWRLFGEY 160 + +S K+E K + K E + N + EAW Y Sbjct: 206 ---------QQFGFTSNKLEWMTDKLCTTKKRKHEKFPGMELWNQCLAGNPEAWEEMRLY 256 Query: 161 CKGDVTVTREIFKRLEPLSSKE 182 DV E++ L P Sbjct: 257 NIDDVISLEELYLILRPWYQGH 278 >gi|119487547|ref|ZP_01621157.1| hypothetical protein L8106_26862 [Lyngbya sp. PCC 8106] gi|119455716|gb|EAW36852.1| hypothetical protein L8106_26862 [Lyngbya sp. PCC 8106] Length = 309 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 84/305 (27%), Gaps = 56/305 (18%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV-----ELWDCVHDPVMPQVL 57 L++D E + Y + L + + L+D + P + + Sbjct: 22 ILWLDTE-----------VADYKNKPRLSLIQVLTTPNEIKSDHLYLFDVLDQPELTTLF 70 Query: 58 KE-ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA----RSNG--LPSALK 110 E + N + V HN+ ++ +L CTLV+A LK Sbjct: 71 IEEIMANPAIEKVFHNANYDLKLLGKK-----QSKNVTCTLVMAKKIPYYLLPVPNYQLK 125 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + L + K E R EY + DV + Sbjct: 126 TLATQLGDFTN-----------IDKQEQSSDWGQRPLT------EKQLEYAQMDVVYLAQ 168 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 I K Q L D T D+ T Q + + +LD E+ + L Sbjct: 169 IH----QCLLKLQPLASPDPTTE------DLNKLATRYQEIAHDWKQLDSEITHIQDRLK 218 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +++ + +TT ++ + + + Sbjct: 219 -QAMKTQQVDQTDSFKLSSSQRKTLKTTFAQLSEFVQTQNLELDFPLTLTQALQKQLGET 277 Query: 291 LNTLV 295 + L Sbjct: 278 IQQLP 282 >gi|281416299|ref|YP_003347539.1| DNA polymerase [Klebsiella phage KP32] gi|262410418|gb|ACY66683.1| DNA polymerase [Klebsiella phage KP32] Length = 704 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 50/472 (10%), Positives = 98/472 (20%), Gaps = 126/472 (26%) Query: 227 YGLVSSSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +V + + + L + + VL + P+ + + Sbjct: 330 EHVVFNPSSRDHIALKLKEAGWIPTEFTDKGAPKVDDEVLEHVRVDDPEKQRCIDLIKEY 389 Query: 284 SRSAV------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSH 336 + + DG++ G++ GA TGR + +P S Sbjct: 390 LMIQKRIGQAAEGDKAWLRYVQEDGKIHGSVNPNGA-VTGRATHSFPNLGQVPGVRSPYG 448 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 E P D +G+E R LA Sbjct: 449 EPCRAAFGAEHHLDGLTGLP-----------------WVQAGIDASGLELRCLAHF---- 487 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + ++ G V V R K Y G + Sbjct: 488 --MSKYDGGAYADVILNGDIHTVNQQAAELPTRDNAKTFIYGFLYGAGDEKI-------- 537 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + +KK + + Sbjct: 538 ------------------------------------GQIVGAGKERGKELKKKFLENTPA 561 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 ++ L + Q ++ K + + GR + R Sbjct: 562 IAALREGIQQTLVESSRWVAGEQKVKWKRR------------WIKGLDGRKVHVRSPHA- 608 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI------------ 624 ++Q+ I ++ + Sbjct: 609 --------------------ALNTLLQSAGALICKLWIVETEELLLKAGLKHGWDGDFAY 648 Query: 625 VLTVHDEIVCET--PDTDEFNASMLYHLMTSNPS-WAKGLPLKAEGYESKRY 673 + VHDEI P+ + M + + L EG + Sbjct: 649 MAWVHDEIQVACRTPEIAQQVIDTAQQAMRNVGEHFKFRCRLDTEGKMGPNW 700 >gi|209551599|ref|YP_002283516.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537355|gb|ACI57290.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 208 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 49/208 (23%), Gaps = 27/208 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET + + + D ++ L LE+ Sbjct: 24 IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIASGQKEAPNLVALLED 73 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 + H F+ VL F + CT + +R + L K Sbjct: 74 PTHQKIFHYGRFDIAVLFHTFGVTTNP--VFCTKIASRLIR------TYTDRHGL---KD 122 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 + L K + + EY DV + +L ++ Sbjct: 123 NLKEMLDVDISKAQQSSDWAAETLSPAQ------LEYAASDVLYLHALRDKLTERLLRDG 176 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIV 211 + + L + Sbjct: 177 RFDHATACFAFLPTRAKLDLLGWEEADI 204 >gi|22298627|ref|NP_681874.1| putative ribonuclease D [Thermosynechococcus elongatus BP-1] gi|22294807|dbj|BAC08636.1| tlr1083 [Thermosynechococcus elongatus BP-1] Length = 211 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 63/207 (30%), Gaps = 34/207 (16%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L +D ET G+ + + L + V + L++ L Sbjct: 26 DQLAVDTET--------MGLNIPRD--RLCLVQVCDPEGQVAVVKIGRGQKEAPHLQQLL 75 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA---RSNGLPSALKAVGEA-LK 117 E+ +T + H + F+ L+ + + CT + + R+ LK + L Sbjct: 76 EHPRITKIFHYARFDLATLRYHLGIRVHP--VFCTKIASKIARTYSPRHGLKDLVLDLLG 133 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + K + + Y DV + ++L Sbjct: 134 VEIDKSAQSSDWGNATA------------------LREDQLRYAANDVRYLIPLRQQLTA 175 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALA 204 + +E+ + ++ VD+ LA Sbjct: 176 MLKREERFELVQTALSCLPAIVDLDLA 202 >gi|302868656|ref|YP_003837293.1| DNA-directed DNA polymerase [Micromonospora aurantiaca ATCC 27029] gi|302571515|gb|ADL47717.1| DNA-directed DNA polymerase [Micromonospora aurantiaca ATCC 27029] Length = 552 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 58/429 (13%), Positives = 99/429 (23%), Gaps = 127/429 (29%) Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 +L + + +L F G+ L + + V P Sbjct: 203 RRLAELQARIADAFGVRQVHADSPAELLR-AFARVGVDLPNTRAWVLRGV------EHPA 255 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 A V R +A S GR G +GRW+ +P+ Sbjct: 256 APLVLEY-KELYRIWTAHGWAWRDAWVSGGRFHPEY-VPGGVVSGRWATRGGGALQIPK- 312 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +R V+A G VVAD +E RVLA + Sbjct: 313 ------------------------------VIRQAVVADPGWTFVVADAGQLEPRVLAAV 342 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ A G+ RA KV L Y A Sbjct: 343 SEDERLAAAGGAGDLYAALARDAFAG---------DRAKAKVALLGAMYGQTGGA----- 388 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + + + A + + ++G C Sbjct: 389 -----------AVPALAVLRKNYPTAFGYVEAAARTGEAGGLVRSWLGRTCP-------- 429 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + P G D Sbjct: 430 --PGSAGFAEGEEAM-----------------------------------PDG----GAD 448 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI--LAEGMMNATKAG--YDIVLTV 628 + + + + TR ++QA + + + AG ++V Sbjct: 449 PHSPSARAARSRGRFTR---------NFVIQATAAEWASTLLATLRTELAGTEAELVFFQ 499 Query: 629 HDEIVCETP 637 HDE++ P Sbjct: 500 HDEVMVHCP 508 >gi|320159696|ref|YP_004172920.1| putative ribonuclease D [Anaerolinea thermophila UNI-1] gi|319993549|dbj|BAJ62320.1| putative ribonuclease D [Anaerolinea thermophila UNI-1] Length = 380 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 42/163 (25%), Gaps = 16/163 (9%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 + +D E G+ Y E + L F + L E Sbjct: 30 QIAVDTE--------SNGLHAYQE--QICLIQFSVPGADYLVDPLASVN--LSGLNEIFS 77 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLSS 120 N + V H + ++ LK F T++ AR G L A+ E ++ Sbjct: 78 NPGIEKVFHAAEYDILCLKRDFGFTF--THLFDTMIAARILGRSEVGLAALLEEHFGVTL 135 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 K + R L E + Sbjct: 136 DKRYQRANWARRPLPPAMLNYARLDTHYLIDLRNHLAKELAER 178 >gi|47934638|gb|AAT39757.1| DNA polymerase [Uncultured T7-like podovirus] Length = 205 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 69/229 (30%), Gaps = 54/229 (23%) Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234 G+ D L + ++ EL+ + V + Sbjct: 1 ERNGFMFDYDAGSCLYRRQKERMGEIVTELQEVFPPIVEERWSEKTGKRLKDKVEVFNPA 60 Query: 235 CLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 +++ L + + + + + L + + + + + + Sbjct: 61 SRQQIARRLESKGVVWEKRTEKGNIIVDETTLGAYVDVPEAV--LILEYLTLGK-RSAMV 117 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 ++A SDGR+ G + G + TGR + +P + Sbjct: 118 KGWLDAYESDGRIHGYVNSNG-TVTGRMTHSNPNMAQIPSGAEY---------------- 160 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 RSC + +G+KLV D +G+E R+LA + + Sbjct: 161 -------------RSCFVVPQGRKLVGVDASGLELRMLAHYMRDDAFTQ 196 >gi|157828459|ref|YP_001494701.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933177|ref|YP_001649966.1| ribonuclease D [Rickettsia rickettsii str. Iowa] gi|157800940|gb|ABV76193.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908264|gb|ABY72560.1| ribonuclease D [Rickettsia rickettsii str. Iowa] Length = 203 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 58/195 (29%), Gaps = 34/195 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L ID ET G+ + + + L F + L + +K L + Sbjct: 20 LAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFTNQDYTAPNVKALLLD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 + H + F+ +K ++D+ CT + ++ LK + L Sbjct: 70 KTRCKIFHFARFDLASIKKYLSIDLE--NIFCTKISSKLVRTYTDSHGLKDLCREL---- 123 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 L K + N EY DV ++ L+ + Sbjct: 124 --------LNINISKQQQSSYWGADNLS------SEQKEYAAKDVLYLHQLKDILQKMLL 169 Query: 181 KEQELWYLDQTINDR 195 KE + L Q I Sbjct: 170 KENR-YELAQDIFRF 183 >gi|329114438|ref|ZP_08243200.1| Ribonuclease D [Acetobacter pomorum DM001] gi|326696514|gb|EGE48193.1| Ribonuclease D [Acetobacter pomorum DM001] Length = 256 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 42/187 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC------VHDPVMPQVL 57 + +D ET G+ + + + L D L P L Sbjct: 66 VAVDTET--------MGLNPHRD--RLCLVQLSAGDGTAHLVQIIPTSLGGKGYDCP-NL 114 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGE 114 K + + +T + H + F+ +L+ + + +CT + AR L A+ Sbjct: 115 KRVMADPSITKIMHFARFDVAILQHALGITVSP--VVCTKIAARLVRTFTDRHGLAALCR 172 Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L + K ++ + A K E Y DV ++ Sbjct: 173 DMLGVELSKQQQTSDWGALELKPEQ-------------------LAYAASDVLYLHALWD 213 Query: 174 RLEPLSS 180 ++ L Sbjct: 214 KMSALLD 220 >gi|319403664|emb|CBI77249.1| Ribonuclease D [Bartonella rochalimae ATCC BAA-1498] Length = 206 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 46/174 (26%), Gaps = 31/174 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ L LE+ Sbjct: 22 IAIDTET--------LGLQPHRD--RLCVVQLSSGDGTADIIQIAKGQNSAPNLVTLLED 71 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 +T + H F+ +L F + CT + ++ ++ Sbjct: 72 KTITKIFHFGRFDLAILAHTFG--VMPDAVFCTKLASKL-----------------TRTY 112 Query: 124 EEGKELIARFCKGETHECLYDRN-KPNHREAWRLF-GEYCKGDVTVTREIFKRL 175 + L + + +A EY DV + Sbjct: 113 TDRHGLKEICSELLNVNISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKSIF 166 >gi|152968215|ref|YP_001363999.1| DNA-directed DNA polymerase [Kineococcus radiotolerans SRS30216] gi|151362732|gb|ABS05735.1| DNA-directed DNA polymerase [Kineococcus radiotolerans SRS30216] Length = 592 Score = 76.3 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 68/454 (14%), Positives = 108/454 (23%), Gaps = 144/454 (31%) Query: 194 DRGYCVDVALAHTLNQIV---------DVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 G VD A+A + + R++ ++ + R ++ L Sbjct: 229 RTGLPVDRAVAERIVADAVGPRPGDAGEEARSRAVRDAPVHEHLGRVDLRNPAQVLAALR 288 Query: 245 LETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK-LNTLVEAMNSDGR 303 G + D L ++ P + +A R A L E + +DGR Sbjct: 289 G-LGFDVPDTR----AWRLERLREAHPGVAALL-AWRKAERLATTYGYRWLDEHVGADGR 342 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 LRG A+ + NLP Sbjct: 343 LRGEWSGADAAAGRMTAQAG--LHNLP-------------------------------SE 369 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R V A G LV ADL +E RVLA ++G+ + A A Sbjct: 370 LRPAVAAEPGHVLVRADLGQVEPRVLAAVSGDAGLVAATRD----------DDLYAPVAA 419 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 R KV LA Y + A + A + R Sbjct: 420 ALGVDRPTAKVAVLAAMYGQTSGA----------------AGEALRRMERAYPTALGYLR 463 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 + E + G L + + A A + Sbjct: 464 AAELAGLEGRDVRTYGGR----------------------LVRISDLAPAEPGAATAARG 501 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 R ++ L + G Sbjct: 502 RFARNAVVQGAAAELF--------------------------KAWAAAVRAGLA------ 529 Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 + IVL +HDE++ P Sbjct: 530 GSA---------------GRIVLCLHDELLLHVP 548 >gi|218670593|ref|ZP_03520264.1| ribonuclease III protein [Rhizobium etli GR56] Length = 208 Score = 76.3 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 26/212 (12%), Positives = 50/212 (23%), Gaps = 35/212 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET + + + D ++ L LE+ Sbjct: 24 VAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLVALLED 73 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKAVGEALKLS 119 + H F+ VL F + CT + +R + E L + Sbjct: 74 PTHQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRLIRTYTDRHGLKDNLKEMLDID 131 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++ + A EY DV + +L Sbjct: 132 ISKTQQSSDWAAETLSPAQ-------------------LEYAASDVLYLHALRDKLTARL 172 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 ++ + + L + Sbjct: 173 IRDGRFDHATACFEFLPTRAKLDLLGWEEADI 204 >gi|15892510|ref|NP_360224.1| ribonuclease D [Rickettsia conorii str. Malish 7] gi|34580497|ref|ZP_00141977.1| ribonuclease D [Rickettsia sibirica 246] gi|229586700|ref|YP_002845201.1| Ribonuclease D [Rickettsia africae ESF-5] gi|238650888|ref|YP_002916744.1| ribonuclease D [Rickettsia peacockii str. Rustic] gi|15619670|gb|AAL03125.1| ribonuclease D [Rickettsia conorii str. Malish 7] gi|28261882|gb|EAA25386.1| ribonuclease D [Rickettsia sibirica 246] gi|228021750|gb|ACP53458.1| Ribonuclease D [Rickettsia africae ESF-5] gi|238624986|gb|ACR47692.1| ribonuclease D [Rickettsia peacockii str. Rustic] Length = 203 Score = 76.3 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 58/195 (29%), Gaps = 34/195 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L ID ET G+ + + + L F + L + +K L + Sbjct: 20 LAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFTNQDYTAPNVKALLLD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 + H + F+ +K ++D+ CT + ++ LK + L Sbjct: 70 KTRCKIFHFARFDLASIKKYLSIDLE--NIFCTKISSKLVRTYTDSHGLKDLCREL---- 123 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 L K + N EY DV ++ L+ + Sbjct: 124 --------LNINISKQQQSSYWGADNLS------SEQKEYAAKDVLYLHQLKDILQKMLL 169 Query: 181 KEQELWYLDQTINDR 195 KE + L Q I Sbjct: 170 KENR-YELAQDIFRF 183 >gi|170751505|ref|YP_001757765.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831] gi|170658027|gb|ACB27082.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831] Length = 207 Score = 76.3 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 52/182 (28%), Gaps = 35/182 (19%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 + ID ET G+ + + + + D ++ P VLK L Sbjct: 21 RAVAIDTET--------LGLNPHRD--RLCVVQLSTGDGTADVVQIPQAGPEPVVLKRVL 70 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-K 117 + + + H + F+ VL + CT + ++ LK V L Sbjct: 71 ADPGILKIFHFARFDVAVLYRALG--VMPSPVYCTKIASKLARTYTDRHGLKDVVRELVG 128 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + K ++ + + Y DV +RL+ Sbjct: 129 VDLSKQQQSSDW-------------GAETLSQAQLD------YAASDVLHLHAARERLDA 169 Query: 178 LS 179 + Sbjct: 170 ML 171 >gi|218661189|ref|ZP_03517119.1| ribonuclease III protein [Rhizobium etli IE4771] Length = 208 Score = 76.3 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 49/208 (23%), Gaps = 27/208 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET + + + D ++ L LE+ Sbjct: 24 VAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLVALLED 73 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 + H F+ VL F + CT + +R + L K Sbjct: 74 PTHQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRLIR------TYTDRHGL---KD 122 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 + L K + + EY DV + +L ++ Sbjct: 123 NLKEMLDIDISKTQQSSDWAAETLSPAQ------LEYAASDVLYLHALRDKLTARLIRDG 176 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIV 211 + + L + Sbjct: 177 RFDHATACFEFLPTRAKLDLLGWEEADI 204 >gi|222147114|ref|YP_002548071.1| ribonuclease D [Agrobacterium vitis S4] gi|221734104|gb|ACM35067.1| ribonuclease D [Agrobacterium vitis S4] Length = 208 Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 48/203 (23%), Gaps = 27/203 (13%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 + ID ET I + + D ++ L L Sbjct: 22 RAIAIDTETLGLIP----------RRDRLCVVQLSPGDGTADVIRIAPGQRQAPNLTALL 71 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 E+ + H F+ VL F + CT + +R L Sbjct: 72 EDPTREKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRL---SRTYTD---RHGL--- 120 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 K + L K + + EY DV + +L + Sbjct: 121 KDNLKEMLDVDVSKAQQSSDWAAETLSPAQ------LEYAASDVLYLHALRDKLTARLVR 174 Query: 182 EQELWYLDQTINDRGYCVDVALA 204 + + + + L Sbjct: 175 DGRMDHATACFEFLPTRAKLDLL 197 >gi|315504872|ref|YP_004083759.1| DNA-directed DNA polymerase [Micromonospora sp. L5] gi|315411491|gb|ADU09608.1| DNA-directed DNA polymerase [Micromonospora sp. L5] Length = 552 Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 58/429 (13%), Positives = 99/429 (23%), Gaps = 127/429 (29%) Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 +L + + +L F G+ L + + V P Sbjct: 203 RRLAELQARIADAFGVRQVHADSPAELLR-AFARAGVDLPNTRAWVLRGV------EHPA 255 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 A V R +A S GR G +GRW+ +P+ Sbjct: 256 APLVLEY-KELYRIWTAHGWAWRDAWVSGGRFHPEY-VPGGVVSGRWATRGGGALQIPK- 312 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +R V+A G VVAD +E RVLA + Sbjct: 313 ------------------------------VIRQAVVADPGWTFVVADAGQLEPRVLAAV 342 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ A G+ RA KV L Y A Sbjct: 343 SEDERLAAAGGAGDLYAALARDAFAG---------DRAKAKVALLGAMYGQTGGA----- 388 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + + + A + + ++G C Sbjct: 389 -----------AVPALAVLRKNYPTAFGYVEAAARTGEAGGLVRSWLGRTCP-------- 429 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + P G D Sbjct: 430 --PGSAGFAEGEEAM-----------------------------------PDG----GAD 448 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI--LAEGMMNATKAG--YDIVLTV 628 + + + + TR ++QA + + + AG ++V Sbjct: 449 PHSPSARAARSRGRFTR---------NFVIQATAAEWASTLLATLRTELAGTEAELVFFQ 499 Query: 629 HDEIVCETP 637 HDE++ P Sbjct: 500 HDEVMVHCP 508 >gi|58040278|ref|YP_192242.1| ribonuclease D [Gluconobacter oxydans 621H] gi|58002692|gb|AAW61586.1| Ribonuclease D [Gluconobacter oxydans 621H] Length = 214 Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 61/208 (29%), Gaps = 42/208 (20%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC------VHDPVMPQVL 57 + ID ET G+ + + + L D L P L Sbjct: 24 VAIDTET--------MGLNPHRD--RLCLVQLSAGDGEAHLVQIKPVSMGGRGYDCP-NL 72 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGE 114 K L + VT + H + F+ VL+ FN+ IP ICT + AR L + Sbjct: 73 KALLTDDSVTKLMHFARFDVAVLQNAFNITIP--SVICTKIAARLVYTFTDRHGLAYLCR 130 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L L K + + + Y DV ++ + Sbjct: 131 DL------------LGVEISKHQQSSDWGAQTLTPDQ------LRYAASDVLYLHALWDK 172 Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVD 200 LE + ++L +D Sbjct: 173 LEAMLIRENRRDLAQACYDFLPARCRLD 200 >gi|296130861|ref|YP_003638111.1| DNA-directed DNA polymerase [Cellulomonas flavigena DSM 20109] gi|296022676|gb|ADG75912.1| DNA-directed DNA polymerase [Cellulomonas flavigena DSM 20109] Length = 570 Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 69/501 (13%), Positives = 116/501 (23%), Gaps = 146/501 (29%) Query: 187 YLDQTINDRGYCVDVALAHTLNQIVD----------VERTKLDQELESLTYGLVSSSRCL 236 + + G D L + +L + L + Sbjct: 181 LVAAEMQHDGLPWDPVRHDELLTDLLGPRPVGGGRPRRLEELVTTIRELLADPHLNPDSQ 240 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 L L G L ++ + + P + + SR ++ Sbjct: 241 PHLLAAL-RRQGFSLSSTSKWEVREL------DHPVVAPLLEY-KKLSRLLSANGWAWLD 292 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + DGR R +G TGRW+ LP Sbjct: 293 SWVRDGRFRPAY-VVGGVVTGRWATDGGGALQLP-------------------------- 325 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R+ A +G +LVVAD A +E RVLA M+G++ A + Sbjct: 326 -----ASLRAAARADDGWRLVVADAAQLEPRVLAAMSGDRAMADAARG---------SDL 371 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 + T R K L Y + + + Sbjct: 372 YQRIADAGTVPTRTDAKYALLGAIYGATTG----------------SAGMLMPRLARAYP 415 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 A ++G R + + L A + + Sbjct: 416 QAVALVEAAARAGERGETVSTWLG----------RTSPPASAAFLDRLGAAGAEGADPDD 465 Query: 537 AIIARKRR------DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 AR+R V + L S R R++G+ R Sbjct: 466 VRDARRRARDRGRFTRNFVVQGTAAEWALCWLASLRRR-LREIGDGR------------- 511 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650 +V +HDE+V +P D + Sbjct: 512 -------------------------------ARLVFFLHDEVVVHSPAQDADAVATAVRE 540 Query: 651 MTS----------NPSWAKGL 661 +A L Sbjct: 541 AAEEAGRLLFGAAPVEFALDL 561 >gi|13472866|ref|NP_104433.1| hypothetical protein mll3296 [Mesorhizobium loti MAFF303099] gi|14023613|dbj|BAB50219.1| mll3296 [Mesorhizobium loti MAFF303099] Length = 206 Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 56/204 (27%), Gaps = 35/204 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + L D ++ L L N Sbjct: 22 VAIDTET--------LGLNPHRD--RLCLVQISPGDGSADVIQIAPGQKKAPNLVSLLRN 71 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLS 119 VT + H F+ VL F + CT + +R LK + E L + Sbjct: 72 RSVTKLFHFGRFDLAVLYNAFG--VMPEPVFCTKIASRLTRTYTDRHGLKDICFELLGVG 129 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++ + A E EY DV + L Sbjct: 130 LSKAQQSSDWAAETLSPEQ-------------------LEYAASDVLYLHRLRDVLAGRL 170 Query: 180 SKEQELWYLDQTINDRGYCVDVAL 203 ++E D + L Sbjct: 171 AREGRTKEADACFRFLPTRAKLDL 194 >gi|319406582|emb|CBI80224.1| Ribonuclease D [Bartonella sp. 1-1C] Length = 206 Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 46/174 (26%), Gaps = 31/174 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ L LE+ Sbjct: 22 IAIDTET--------LGLQPHRD--RLCVVQLSPGDGTADIIQIAKGQNSAPNLVTLLED 71 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 +T + H F+ +L F + CT + ++ ++ Sbjct: 72 KTITKIFHFGRFDLAILAHTFG--VMPDAVFCTKLASKL-----------------TRTY 112 Query: 124 EEGKELIARFCKGETHECLYDRN-KPNHREAWRLF-GEYCKGDVTVTREIFKRL 175 + L + + +A EY DV + Sbjct: 113 TDRHGLKEICSELLNVNISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKSIF 166 >gi|225626345|ref|YP_002727841.1| DNA polymerase A [Pseudomonas phage phikF77] gi|225594854|emb|CAX63139.1| DNA polymerase A [Pseudomonas phage phikF77] Length = 808 Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 40/428 (9%), Positives = 95/428 (22%), Gaps = 83/428 (19%) Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL--------------NTLVEAMNSDG 302 +T L + +K +A ++ + +++ ++ DG Sbjct: 400 STSGDALKALEKQGFEAAKLLMRLAELHKDNSSFYITHTYNKDGTIKDTKGMLQYVDDDG 459 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 + +L A+ T R S Q LP E Sbjct: 460 IIHHSLN-TTATATTRLSSSRPNLQQLPSKDEDDPEA---------------------GS 497 Query: 363 CVRSCVIASEGK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 V+ ++ G + D +E +LA ++ ++ L G D++ Sbjct: 498 RVKEMFVSRFGADGMIGETDYTALEVVMLAALSKDRNLLAKLMAGTDMH----------- 546 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 + F + + + + Sbjct: 547 -------LYRLAGKHN-------NWNGF-DYDQLVAIKKDPNHPWHGRMMQARKNIKPKA 591 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT----IENGK 536 F + A + + + E T + Sbjct: 592 FSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIAFRQIVRDSAEATSLVMYKAED 651 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 + A ++ + P G +R T Sbjct: 652 QMPAGAFSEMGPDGNWRQYRRGFWQAPGGTCYSFRQQERWDKEQRKTVMDFKDTQI---- 707 Query: 597 LTENIVQAVSRDILAEGMMNA-----TKAGY----DIVLTVHDEIVCETPDTDEFNASM- 646 Q + ++ + + G+ ++ VHD + + + Sbjct: 708 -ANYWNQGEAGFMMTVSVGRIFRWMLHRPGFMVTEFLINNVHDAVYTDCHKDTAAEVNNG 766 Query: 647 LYHLMTSN 654 + +M Sbjct: 767 VRDIMADA 774 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 70/280 (25%), Gaps = 56/280 (20%) Query: 1 MATL-FIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVL 57 M T+ +D ET S G D +++ + D D + Sbjct: 1 MTTIRILDLETES---YEHKGRKASPFDPRNYIVMAGWRDD------VDGKVGQKVEHRF 51 Query: 58 K--EALENTDVTI---------VAHNSYFERTVL-----KACFNLDIPIHRWICTLVLAR 101 + E+ + VAHN+ FE R CT Sbjct: 52 RSRAEAEDPNNRWFNLDGVDVIVAHNAMFESNWFFTRYRDEYLAFLRRGGRVWCTQQAEY 111 Query: 102 SNG----LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 L AL + + K++ K L ++ + Sbjct: 112 LLSHQTWLYPALDELAPKYG-GTHKVDGIKMLWD----------QGVLTSEMDQDLLSEY 160 Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI---------NDRGYCVDVALAHTLN 208 GD+ T +F + G VD+ +A + Sbjct: 161 LSGPCGDIENTALVFYGQLMKLQARGMWAGYLERCEALIGFSAMECAGLKVDLEVAKVNH 220 Query: 209 QIVDVERTKLDQELESLT----YGLVSSSRCLEKLKTWLF 244 E ++ EL+ L L + WL+ Sbjct: 221 AKQLEEVAGIEAELKKLMPDFPEYFEFKYTSLYHMSAWLY 260 >gi|209524209|ref|ZP_03272759.1| 3'-5' exonuclease [Arthrospira maxima CS-328] gi|209495300|gb|EDZ95605.1| 3'-5' exonuclease [Arthrospira maxima CS-328] Length = 207 Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 50/186 (26%), Gaps = 26/186 (13%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L ID ET G+ + + L V LK LE Sbjct: 25 LAIDTET--------MGLLPGRD--RLCLVQICDPKGQVVAIRIERGQREAPNLKTLLET 74 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 ++ V H + F+ L+ +++ CT + ++ + Sbjct: 75 ANILKVFHFARFDVATLRHNLGIEVNP--VFCTKIASK----------LARTY----TGK 118 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 K+LI E + + N Y DV +L + +E+ Sbjct: 119 HGLKDLIMELEGVELDKSSQSSDWGNAANLSENQLNYAANDVRYLLSAKDKLIQMLKREE 178 Query: 184 ELWYLD 189 Sbjct: 179 RWDLAL 184 >gi|67459045|ref|YP_246669.1| ribonuclease D [Rickettsia felis URRWXCal2] gi|67004578|gb|AAY61504.1| Ribonuclease D [Rickettsia felis URRWXCal2] Length = 203 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 53/179 (29%), Gaps = 33/179 (18%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + L F + L V+ LK L + Sbjct: 20 IAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFVNQDYSAPNLKALLLD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 + H + F+ +K ++D+ CT + ++ LK + L Sbjct: 70 KTRCKIFHFARFDLAAIKKYLSIDLE--NIFCTKISSKLVRTYTDSHGLKDLCREL---- 123 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 L K + N EY DV ++ L+ + Sbjct: 124 --------LSINISKQQQSSYWGTDNLS------SEQKEYAAKDVLYLHQLKDILQKML 168 >gi|239787681|emb|CAX84189.1| 3\'-5\' exonuclease family protein [uncultured bacterium] Length = 202 Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 55/212 (25%), Gaps = 34/212 (16%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 + ID ET + + L D L P LK L Sbjct: 19 VIAIDTETMGLNPMRD----------RLCLVQLSSGDGDAHLVHFQGRYEAP-RLKALLA 67 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEALKLS 119 + + + H + F+ +L + CT + +R N LK + L Sbjct: 68 DHNRLKLFHYARFDIAMLARWLGVT--CTPVYCTKIASRLTRTNTDKHGLKDLCRDL--- 122 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 G +L + + Y DV + +L+ L Sbjct: 123 -----LGIDLSKQQQTSDWGSGDLT----------AEQQAYAASDVLHLHALKAKLDALL 167 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 +E D + + L + + Sbjct: 168 KREGRGALADSCYSFLPTRAALDLLGWGEEDI 199 >gi|328545553|ref|YP_004305662.1| 3'-5' exonuclease [polymorphum gilvum SL003B-26A1] gi|326415294|gb|ADZ72357.1| 3'-5' exonuclease, putative [Polymorphum gilvum SL003B-26A1] Length = 206 Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 25/208 (12%), Positives = 58/208 (27%), Gaps = 27/208 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + +D ET G+ + + + + D ++ L L + Sbjct: 22 VAVDTET--------LGLNPHRD--RLCVVQLSPGDGTADVVQIARGQRAAPNLARLLTD 71 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 + H + F+ VL+ +++ CT + ++ + L K Sbjct: 72 PAKMKIFHFARFDLAVLRHNLGIEVAP--VWCTKIASKLVR------TYTDRHGL---KD 120 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 + L K + + + A Y DV + ++L + +E+ Sbjct: 121 ITRELLGVDLSKQQQSSDWAAETLTDAQLA------YAASDVLHLHALREKLAAMLEREE 174 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIV 211 + L Q + Sbjct: 175 RTALARACYEFLPTRAALDLMGWEEQDI 202 >gi|75674370|ref|YP_316791.1| 3'-5' exonuclease [Nitrobacter winogradskyi Nb-255] gi|74419240|gb|ABA03439.1| 3'-5' exonuclease [Nitrobacter winogradskyi Nb-255] Length = 206 Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 52/197 (26%), Gaps = 33/197 (16%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64 ID ET G+ + + + + D ++ L + L++ Sbjct: 23 AIDTET--------MGLKPHRD--RLCVVQMSPGDGSADVIQIARGQRDAPNLIKLLKDP 72 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSSQ 121 + + H + F+ L F + CT + +R LK + L Sbjct: 73 AIVKIFHFARFDLAALYNAFG--VMPRPVYCTKIASRLIRTYTDRHGLKDLVREL----- 125 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 L K + + + A Y DV + +LE ++ Sbjct: 126 -------LSIDLSKQQQSSDWGSPTLSDAQLA------YAASDVLHLHALRDKLEATLAR 172 Query: 182 EQELWYLDQTINDRGYC 198 E Sbjct: 173 EDRSALAQACFEFLPSR 189 >gi|86355756|ref|YP_467648.1| RNAse D protein [Rhizobium etli CFN 42] gi|86279858|gb|ABC88921.1| RNAse D protein [Rhizobium etli CFN 42] Length = 208 Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 49/208 (23%), Gaps = 27/208 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET + + + D ++ L LE+ Sbjct: 24 IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADIIRIAAGQKAAPNLVALLED 73 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 + H F+ VL F + CT + +R + L K Sbjct: 74 PTHQKIFHYGRFDIAVLFHTFGVTTNP--VFCTKIASRLCR------TYTDRHGL---KD 122 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 + L K + + EY DV + +L ++ Sbjct: 123 NLKEMLDVDVSKAQQSSDWAAETLSPAQ------LEYAASDVLYLHALRDKLTARLIRDG 176 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIV 211 + + L + Sbjct: 177 RFDHATACFAFLPTRAKLDLLGWEEADI 204 >gi|207109828|ref|ZP_03243990.1| DNA polymerase I [Helicobacter pylori HPKX_438_CA4C1] Length = 152 Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 48/185 (25%), Gaps = 41/185 (22%) Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 L + + NF + + + +A+ Sbjct: 4 GRDIHLETSKALFGGDLAKEKRSIAKSINFGLVYGMGSKKLSETLNISLNEAKSYIEAYF 63 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ + + N + + +T + GR V+ Sbjct: 64 KRFPSIKDYLNRMKEEILKTSK--------------------------AFTLLGRYRVF- 96 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVL 626 D Y+ Y + I Q + D+L GM+ ++ ++L Sbjct: 97 DFTGANDYIKGN---------YLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLL 147 Query: 627 TVHDE 631 VHDE Sbjct: 148 QVHDE 152 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 5/79 (6%) Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 + K++R+I K + L Y G+K + LN++ + + + +++ Sbjct: 19 DLAKEKRSIAKSINFGLVYGMGSKKLSET-----LNISLNEAKSYIEAYFKRFPSIKDYL 73 Query: 483 RWMQENHPEHAIEDLFIGT 501 M+E + + +G Sbjct: 74 NRMKEEILKTSKAFTLLGR 92 >gi|75908135|ref|YP_322431.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413] gi|75701860|gb|ABA21536.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413] Length = 209 Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 59/202 (29%), Gaps = 26/202 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + +D ET + + + L + V LK+ LE Sbjct: 27 IAVDTETMGLLP----------QRDRLCLIQLCNPEGKVTAIRIARGQTAAPNLKKLLEA 76 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 T+V V H + F+ L+ ++ + CT + ++ + + Sbjct: 77 TNVLKVFHFARFDVATLRHHLDIHVQP--IFCTKIASKLARTYTNRHGL----------- 123 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 K+L+ + E + + N Y DV ++L + +E+ Sbjct: 124 ---KDLVYELEQVELDKSAQSSDWGNAANLTDAQLSYAANDVRYLLSAQQKLVAMLKREE 180 Query: 184 ELWYLDQTINDRGYCVDVALAH 205 Q V + L Sbjct: 181 RWELAQQCFQVLPTIVSLDLLQ 202 >gi|325842732|ref|ZP_08167767.1| 3'-5' exonuclease [Turicibacter sp. HGF1] gi|325489532|gb|EGC91897.1| 3'-5' exonuclease [Turicibacter sp. HGF1] Length = 232 Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 56/194 (28%), Gaps = 39/194 (20%) Query: 2 ATLFIDFETRSPIDLTKCG--ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59 + +D ET L I Y+ED + + +K Sbjct: 63 KIIGVDIETTGLDFLEDSIRLIAVYSEDFEYVG-------------------EDLEAVKT 103 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 L + V V H+S F+ LK I + + T ++ + ++ Sbjct: 104 LLTDPSVLKVFHHSQFDVCFLKKA---GIDVCTFTDTFIMNQILNNLPVFDSLSR----- 155 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K+ GK L + +E + YC D T E+++ + L Sbjct: 156 LAKVYLGKSLDKSLQH------ADNWQSDLTQEHYA----YCLDDAKTTYELYQHMFDLI 205 Query: 180 SKEQELWYLDQTIN 193 + I Sbjct: 206 INRYLYPRYRREIE 219 >gi|91974656|ref|YP_567315.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5] gi|91681112|gb|ABE37414.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5] Length = 204 Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 29/208 (13%), Positives = 58/208 (27%), Gaps = 35/208 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ LK+ L + Sbjct: 20 VAIDTET--------MGLHPHRD--RLCVVQLSNGDGSADVVQIPQGHSDAPNLKKLLGD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 V + H + F+ L F + CT + +R LK + L Sbjct: 70 PTVVKIFHFARFDLAALYNAFG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREL---- 123 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 L K + + + A Y DV + ++L+ + + Sbjct: 124 --------LNVDLSKQQQSSDWGAETLSDAQLA------YAASDVLHLHGLREKLDAMLA 169 Query: 181 KEQELWYLDQTIND--RGYCVDVALAHT 206 +E +D+ Sbjct: 170 RENRTDLAQACFGFLPHRSRLDLDGWSE 197 >gi|213423791|ref|ZP_03356771.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 304 Score = 75.2 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 20/83 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET S ++ ++ +F + HD Sbjct: 232 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 281 Query: 55 QVLKEALENTDVTIVAHNSYFER 77 ++LK LE+ V V N ++R Sbjct: 282 ELLKPLLEDEKVRKVGQNLKYDR 304 >gi|163867544|ref|YP_001608743.1| hypothetical protein Btr_0277 [Bartonella tribocorum CIP 105476] gi|161017190|emb|CAK00748.1| Ribonuclease D [Bartonella tribocorum CIP 105476] Length = 206 Score = 75.2 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 46/170 (27%), Gaps = 31/170 (18%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ L + LE+ Sbjct: 22 IAIDTET--------LGLQPHRD--RLCVVQISPGDGTADIIQIAKGQKNAPNLVKLLED 71 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 VT + H F+ +L F + CT + ++ ++ Sbjct: 72 NAVTKIFHFGRFDLAILAHTFG--VMPEAVFCTKIASKL-----------------TRTY 112 Query: 124 EEGKELIARFCKGETHECLYDRN-KPNHREAWRLF-GEYCKGDVTVTREI 171 + L + + E EY DV + Sbjct: 113 TDRHGLKEICNELLNVNISKQQQSSDWAAETLSQAQIEYAASDVLYLHRL 162 >gi|27476023|ref|NP_775225.1| DNA polymerase1 [Pseudomonas phage PaP3] gi|27414453|gb|AAL85539.1| DNA polymerase1 [Pseudomonas phage PaP3] Length = 545 Score = 75.2 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 58/445 (13%), Positives = 112/445 (25%), Gaps = 113/445 (25%) Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 L +T T + + V+ +R L LVE + +GRL G+ Sbjct: 190 LTTPKMT-ETSMDTVQGDLGKLVMQRMVWAHRRSL-------LQGLVEQVKPNGRLEGSA 241 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR V N+P +R Sbjct: 242 NPC-ATPTGRMRHRVV--VNIP------------------------AARSPFGPEIRGLF 274 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 W + + V K + Sbjct: 275 --------------QGTPNAGEWKWTVLRRDIGENERVRPHTNIVEVLKGGKWKTVGKYR 320 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA---------HLVKTNSAPEEWEDAE 479 + + + +GY G + +AS G T + + + Sbjct: 321 VYVPENQLIFVGYDGAGLELRMLASYIGDPDYTREVVDGDVHTANQIAAGLPTRDDAKTF 380 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 + + R+++ + + + +++L + Q E+ Sbjct: 381 IYAFIYGAGDAKIGQIIGGTRADGARLREQFLKANPELAKLIERVKQEAER--------- 431 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 L+ GR L R + ++ K Sbjct: 432 ------------------GYLVGLDGRKLTMRRSESGEVMVH--------------KALN 459 Query: 600 NIVQAVSRDILAEGMM----NATKAGYDI--VLTVHDEIVCETPDTDEFNASMLYHLMTS 653 ++QA ++ M+ +AG VL +HDE E D + L M + Sbjct: 460 TLLQAAGAIVMKWAMVILDEKVRRAGLKAWKVLDIHDEGQWECHPED---LATLRGFMET 516 Query: 654 NPSWAKGL-----PLKAEGYESKRY 673 A + PL ++ + + Sbjct: 517 CVKEAGEILGCNCPLASDSIAGRSW 541 >gi|186684292|ref|YP_001867488.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102] gi|186466744|gb|ACC82545.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102] Length = 209 Score = 75.2 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 60/202 (29%), Gaps = 26/202 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + +D ET G+ + + L + V + LK+ E Sbjct: 27 IAVDTET--------MGLLPQRD--RLCLVQLCNLEGKVTVIRIAKGQTEAPNLKKLFEA 76 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 +V V H + F+ L+A + + CT + ++ + + Sbjct: 77 ANVVKVFHFARFDIATLRANLGIQVSP--VFCTKIASKLARTYTNRHGL----------- 123 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 K+++ K E + + N Y DV + ++L + +E+ Sbjct: 124 ---KDVVQELEKVELDKSSQSSDWGNAVSLSEAQLSYAANDVRYLLSVQQKLTEMLKREE 180 Query: 184 ELWYLDQTINDRGYCVDVALAH 205 + V + L Sbjct: 181 RWKIAQECFEFLPTIVSLDLLQ 202 >gi|182437857|ref|YP_001825576.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466373|dbj|BAG20893.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350] Length = 558 Score = 75.2 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 53/402 (13%), Positives = 106/402 (26%), Gaps = 115/402 (28%) Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 F G+ ++ + + P + + R + ++ +GR Sbjct: 234 FARAGIPVKSTRRWELEEL------DHPAVEPLIAY-KKLYRIWTAHGWSWLQDWVREGR 286 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 R G + +GRW+ +P+ Sbjct: 287 FRPEY-QPGGTVSGRWTTNGGGALQIPK-------------------------------V 314 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R V+A G +LVVAD +E RVLA ++ ++ ++ DLY + Sbjct: 315 IRQAVVADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGHDGDLYKALS--------DR 366 Query: 424 VTKDQRAIGKVMELALGYQGGAK-AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 R K+ L Y + + +A+ + A + Sbjct: 367 AFSGDREHAKLAMLGAIYGQTSGDGLKNLAAL-----------------RRRFPLAVAYV 409 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 E + ++G A + + + + + +G AR Sbjct: 410 DDAARAGEEGRVVRTWLGRTSPPAASAGQDEEAGLPQ----EDPEGSGGAPDGGPARARG 465 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 R V + +LML + R ++ Sbjct: 466 RFTRNFVVQGSAADWALLMLAALRRTIFE------------------------------- 494 Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644 Q + +V HDE++ P + Sbjct: 495 QGL---------------RAQLVFFQHDEVIVHCPAEESAAV 521 >gi|255595591|ref|XP_002536350.1| DNA polymerase I, putative [Ricinus communis] gi|223520014|gb|EEF26033.1| DNA polymerase I, putative [Ricinus communis] Length = 547 Score = 74.8 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 74/581 (12%), Positives = 138/581 (23%), Gaps = 132/581 (22%) Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL---------------TYGLV 230 W + Q G A + + +L + Sbjct: 7 WDIVQMRET-GMPWSQEEAENYVLAQWAKVAEHAAKLIEMEPSLAPFSAALSNPEAGIKA 65 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN-KKLTPQAIQVFNNRMRASRSAVL 289 + + + +E + + ++ L + A F + +R+ Sbjct: 66 DLKAAIGQAFSNRGIELQMTEKSGAFKIGEKDLRRVKAAVVEDAKPFFEEWVALNRAK-- 123 Query: 290 KLNTLVEAMNS------DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 K + ++ DGRL TGR S Q PR Sbjct: 124 KAGGMAREVSKYASRSYDGRLHP--NTGHGPVTGRLSSSEPNCQQFPRD----------- 170 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE------QW 397 R+ V + G K+V AD + ++ RV A A Sbjct: 171 ------------------PGFRAIVRSRPGFKIVSADYSALDMRVGAACAIRAQRQILDA 212 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + D+Y+ + Q A KA + +A+ G Sbjct: 213 YMDERAVPHDVYLCIARVIEGRITLDNARVQEANANRAFD------EWKAERDVATAGGK 266 Query: 458 NLNTFAHLVKTNSAPEEW-EDAENFCRWMQENHPEHAIEDLFIGTACERV----KKAW-- 510 + V A + +++ + + W Sbjct: 267 DAAKRYWEVYRQRARTRLLAGFQRCLAEVRQRADAAGTAEWGSLRDAFSIDGMDIHTWTA 326 Query: 511 ---RQKHSR--------------VSELWNEL------------------------HQAFE 529 + + + EL A + Sbjct: 327 LDMFGHNPGTLFAGLQGEEVAAALKKWKKELGGDRQTGKVGNLSLLYAMQAFGLQEAAAK 386 Query: 530 QT-IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV----GNNRSYLNTTT 584 I + R Y++ D + L + D + + Sbjct: 387 NYNIHWTLEEASDVRSKWLAAYVEVDLWHKWTELNPKEEVYIPDPDRGGKFGKKQVYAAY 446 Query: 585 RQLTREYTYG---GKLTENIVQAVSRDILAEGMMNATKAGYD---IVLTVHDEIVCETPD 638 R Y Q+ DIL M + IV VHDE++ E PD Sbjct: 447 TLGERL-IYAFGLNAALSYEDQSTGADILGLVMQEFRQHPGVFKCIVNQVHDEVLFEIPD 505 Query: 639 TDEFNA-SMLYHLMTSNPSWAK---GLPLKAEGYESKRYRK 675 +++ +MT + G+ E ++ + K Sbjct: 506 DKVDEYNAVISRVMTDAAAHYLSPYGVKADCEPETAEFWPK 546 >gi|254718341|ref|ZP_05180152.1| hypothetical protein Bru83_02133 [Brucella sp. 83/13] gi|265983300|ref|ZP_06096035.1| 3'-5' exonuclease [Brucella sp. 83/13] gi|306839563|ref|ZP_07472369.1| 3'-5' exonuclease [Brucella sp. NF 2653] gi|264661892|gb|EEZ32153.1| 3'-5' exonuclease [Brucella sp. 83/13] gi|306405349|gb|EFM61622.1| 3'-5' exonuclease [Brucella sp. NF 2653] Length = 205 Score = 74.8 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 48/179 (26%), Gaps = 31/179 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ L + L++ Sbjct: 21 VAIDTET--------LGLNPHRD--RLCMVQISPGDGTADVIQIEAGQKKAPNLVKLLKD 70 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 +T + H F+ VL F CT + ++ ++ Sbjct: 71 RSITKIFHFGRFDLAVLANAFG--TMPQPVFCTKIASKL-----------------TRTY 111 Query: 124 EEGKELIARFCKGETHECLYDRNKPN--HREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 + L + + + + EY DV + LE Sbjct: 112 TDRHGLKEICSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLE 170 >gi|289178750|gb|ADC85996.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12] Length = 672 Score = 74.8 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 72/241 (29%), Gaps = 15/241 (6%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 D + D HD L+ L+ T+ H +L NL +P+ T + Sbjct: 424 DGHAVVVD-PHDEQYHMALQRILDTYAATLSVHGYKEHLHMLG-AVNLRLPMV-LFDTNL 480 Query: 99 LARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 +L+ + + E + DR + Sbjct: 481 AGYLIDPDFQGGSLQDCADHFLHRHAEEVTETEQGTLDIGMDDERAERDRKVVRNAAIVS 540 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 L + + L E + G VD A L ++ E Sbjct: 541 LLARTLARQLEQ----RCQYSLLRDIELPTSVALFHMEHTGASVDRARLDELLEMFTDES 596 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTP 271 +++Q V + + ++L LF E GL+ T+ +T ++ L++ + Sbjct: 597 NRMEQICYEAAGHEV-NLQSPKQLGVVLFEEMGLNPTKKTKRGSYSTNRKALTTLYATSE 655 Query: 272 Q 272 + Sbjct: 656 E 656 >gi|225626350|ref|YP_002727846.1| hypothetical protein PPphikF77_gp27 [Pseudomonas phage phikF77] gi|225594859|emb|CAX63144.1| hypothetical protein [Pseudomonas phage phikF77] Length = 348 Score = 74.8 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 25/193 (12%) Query: 2 ATLFIDFETR------SPIDLTKCGICKYAEDVCVILFAFGF-DDHPVELWDCVHDP--- 51 L +D ET + G+ + D ++ F + V DC DP Sbjct: 94 KVLSLDIETSPIEGWVWSLWKQNVGLNQIKRDWTILSFCAKWMHSDEVIYMDCQGDPLDD 153 Query: 52 -VMPQVLKEALENTDVTIVAHNSY-FER-TVLKACFNLDIPI---HRWICTLVLARSNGL 105 + L + L+ D+ IV N F+ + F +P + I TL++A+ Sbjct: 154 MHLLVALHKLLDEADIIIV-QNGKRFDVPKINARFFLNKMPPPRPFKVIDTLIIAK---- 208 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 L+ + K K R L+ ++ EAW Y DV Sbjct: 209 -QQFAFTSRKLEYMTHKACTIK---KRLHGKFPGFDLWAACLQDNPEAWEEMRLYNIDDV 264 Query: 166 TVTREIFKRLEPL 178 E++ + P Sbjct: 265 RSMEELYILMRPW 277 >gi|302840030|ref|XP_002951571.1| hypothetical protein VOLCADRAFT_92016 [Volvox carteri f. nagariensis] gi|300263180|gb|EFJ47382.1| hypothetical protein VOLCADRAFT_92016 [Volvox carteri f. nagariensis] Length = 1758 Score = 74.8 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 32/247 (12%), Positives = 65/247 (26%), Gaps = 64/247 (25%) Query: 426 KDQRAIGKVMELALGYQGG------AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 K+ +G Y K + G + ++ Sbjct: 7 KEAFELGGDFHSRTAYGMYEYIQEAVKNGECYLEWEGQGEPDKPLVKDKYASERRKAKVL 66 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 NF + A++ + W + W E Sbjct: 67 NFSIAYGKTAHGLAVDFKTTKEEAQETVDKWYS------DRWEE---------------- 104 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 + GR+ ++ + L+ + R Sbjct: 105 ------------------FKVRTLLGRTRPLPNISSPDFRLSGHSN---RAAINTP---- 139 Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMT 652 +Q + D+ A M+ K+ G+ +++ +HDE++ E P +A L LM Sbjct: 140 --IQGSAADVAAAAMVAIHKSEALRATGFKLLMQIHDEVILEGPRDRSEDAKRLVMELMA 197 Query: 653 SNPSWAK 659 + WA+ Sbjct: 198 NP--WAE 202 >gi|71657888|ref|XP_817452.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL Brener] gi|70882645|gb|EAN95601.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma cruzi] Length = 1417 Score = 74.8 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 37/330 (11%), Positives = 84/330 (25%), Gaps = 85/330 (25%) Query: 353 DPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 + + +R ++ G+K V D + +E VLA + G+ + G D ++ Sbjct: 1100 CQNIPKDDKSPIRRLFVSRFGEKGRCVELDYSQLEIVVLALLCGDPRLVSDLNRGVDFHI 1159 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 + + ++ K GY+ G + ++ Sbjct: 1160 KRASFFSGLPYDEIYK-------------GYKRGIPEYVQL------------------- 1187 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 +F R P E + +++ + + + + Sbjct: 1188 --RRTAKTFSFQRLYGAGVPLLHKTTGIPVEDLEASIRKEEEEYPGIMQFHRLVRTVALR 1245 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 G + LP+G + + + Sbjct: 1246 AENPGLPTHFV------------------VELPTGIRMSF---------------KTRDV 1272 Query: 591 YTYGGKLTENIVQAVSRDILAEGMM----------NATKAGYDIVLTVHDEIVCETPDTD 640 + +Q + LA+ M+ + +V VHD + + Sbjct: 1273 VLNLPPVKNYPIQGFGAE-LAQMMVGRVFRHFVRRDFYGQKAFMVNFVHDSLWLDCHLDV 1331 Query: 641 EFNA-----SMLYHLMTSNPSWAKGLPLKA 665 +L + T G+ LK Sbjct: 1332 LEECIRETRDILTEVHTYVAKAFPGVELKV 1361 >gi|71414478|ref|XP_809340.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL Brener] gi|70873706|gb|EAN87489.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma cruzi] Length = 1473 Score = 74.8 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 37/330 (11%), Positives = 84/330 (25%), Gaps = 85/330 (25%) Query: 353 DPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 + + +R ++ G+K V D + +E VLA + G+ + G D ++ Sbjct: 1156 CQNIPKDDKSPIRRLFVSRFGEKGRCVELDYSQLEIVVLALLCGDPRLVSDLNRGVDFHI 1215 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 + + ++ K GY+ G + ++ Sbjct: 1216 KRASFFSGLPYDEIYK-------------GYKRGIPEYVQL------------------- 1243 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 +F R P E + +++ + + + + Sbjct: 1244 --RRTAKTFSFQRLYGAGVPLLHKTTGIPVEDLEASIRKEEEEYPGIMQFHRLVRTVALR 1301 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 G + LP+G + + + Sbjct: 1302 AENPGLPTHFV------------------VELPTGIRMSF---------------KTRDV 1328 Query: 591 YTYGGKLTENIVQAVSRDILAEGMM----------NATKAGYDIVLTVHDEIVCETPDTD 640 + +Q + LA+ M+ + +V VHD + + Sbjct: 1329 VLNLPPVKNYPIQGFGAE-LAQMMVGRVFRHFVRRDFYGQKAFMVNFVHDSLWLDCHLDV 1387 Query: 641 EFNA-----SMLYHLMTSNPSWAKGLPLKA 665 +L + T G+ LK Sbjct: 1388 LEECIRETRDILTEVHTYVAKAFPGVELKV 1417 >gi|300021932|ref|YP_003754543.1| 3'-5' exonuclease [Hyphomicrobium denitrificans ATCC 51888] gi|299523753|gb|ADJ22222.1| 3'-5' exonuclease [Hyphomicrobium denitrificans ATCC 51888] Length = 205 Score = 74.8 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 51/180 (28%), Gaps = 35/180 (19%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + L D L LK L + Sbjct: 23 IAIDTET--------MGLNPHRD--RLCLVQLSGGDGTAHLVKFDGKSYDAPNLKALLAD 72 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAV-GEALKLS 119 + H + F+ VL+ + CT + ++ LK + GE L + Sbjct: 73 PKSLKIFHFARFDVAVLEHYLGVVTSP--IYCTKIASKLARTYTDRHGLKDLVGEILGIE 130 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++ + E Y DV + RL+ + Sbjct: 131 ISKQQQSSDWG-------------------AAELSDSQRSYAANDVLHLHALKTRLDEML 171 >gi|47934802|gb|AAT39839.1| DNA polymerase [Uncultured T7-like podovirus] Length = 228 Score = 74.8 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 87/249 (34%), Gaps = 42/249 (16%) Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 L E + + + ++ +PL + +E+ Y + L+ + + + Sbjct: 17 DLVAELKEKQYDLEETVHEKFKPLPTFVKEIV--------PKYKKNGELSSVGLKFLGED 68 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLT 270 T++ + + +++ +L L G E TET ++ L + + Sbjct: 69 WTQVGGTFSRI-DWPEFNLGSRQQIGRYLRL-FGWKPEKFTETGQAVVDEKTLETVTDIP 126 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 Q+ + + + ++ + ++A+ DGR+ G + +GA TGR + P Sbjct: 127 E--AQLIAEYLMVGK-RIAQVQSSLDAVEDDGRVHGQVNAIGA-VTGRMTHSSPNMAQTP 182 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 R+C I +G KLV D +G+E R+LA Sbjct: 183 ------------------------AVGVPYGYECRACWIVPDGHKLVGVDASGLELRMLA 218 Query: 391 WMAGEQWKL 399 + Sbjct: 219 SFMNDPTIQ 227 >gi|189427219|ref|YP_001949769.1| gp5 [Salmonella phage phiSG-JL2] gi|189085872|gb|ACD75687.1| gp5 [Salmonella phage phiSG-JL2] Length = 704 Score = 74.8 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 53/499 (10%), Positives = 103/499 (20%), Gaps = 126/499 (25%) Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE---DLTE 256 + A L R ++ + + + ++ L + + Sbjct: 303 NKAQREGLEPCDLDTRDYMEGAPYTPVEFVTFKPSSRDHIQKKLQEAGWVPEKFTEKGAP 362 Query: 257 TTCQRVLSSNKKLTPQ---AIQVFNNRMRASR---SAVLKLNTLVEAMNSDGRLRGTLQF 310 VL + P+ I + + + A + + DG++ G + Sbjct: 363 VVDDEVLEHVRVDDPEKQACIDLIKEYLMIQKRIGQAAEGDKAWLRYVQDDGKIHGAVNP 422 Query: 311 LGASRTGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 GA TGR + +P S E+ P Sbjct: 423 NGA-VTGRATHSFPNLAQVPGVRSPYGEQCRSAFGAEHHLDGITGKP------------- 468 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 D +G+E R LA + + R Sbjct: 469 ----WVQAGIDASGLELRCLAHFMARFDNGEYANEILNGD------IHTKNQNAAELPTR 518 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K Y G + Sbjct: 519 DNAKTFIYGFLYGAGDEKI----------------------------------------- 537 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + +KK + + ++ L + Q+ ++ A + + Sbjct: 538 ---GQIVGAGKERGKELKKKFLENTPAIAALREAIQQSLVKSSAWIGAEQKVQWKRR--- 591 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + GR + R ++Q+ I Sbjct: 592 ---------WIKGLDGRKVHVRSPHA---------------------ALNTLLQSAGALI 621 Query: 610 LAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDEFN--ASMLYHLMTSNP 655 ++ + G + VHDEI M Sbjct: 622 CKLWIIKTEEMLIEKGLKHGWDGDFAYMAWVHDEIQVACRTEHIAQIVIDTAQEAMRWVG 681 Query: 656 S-WAKGLPLKAEGYESKRY 673 WA L EG + Sbjct: 682 EHWAFRCRLDTEGKMGPNW 700 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 61/240 (25%), Gaps = 62/240 (25%) Query: 67 TIVAHNS-YFERTVLKACF------NLDIPIHRWICTLVLARSNGL-------------- 105 IV HN ++ L+ + +P I TLVL+R Sbjct: 55 LIVFHNGHKYDVPALEKLAKLQLNRDFKLPRENCIDTLVLSRLLHANLKDTDMGLLRSGK 114 Query: 106 -------PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 AL+A G L + ++ + + E + + Sbjct: 115 LPGRRFGSHALEAWGYRLGEMKGEYKDDFKAMLEEQGEEYVDGAEWVSFN------EPMM 168 Query: 159 EYCKGDVTVTREI-------------------------FKRLEPLSSKEQELWYLDQTIN 193 Y DV VT ++ ++ E +L Sbjct: 169 AYNVQDVVVTVKLLEKFLTDLHYFPAGMDFTKYDADLFWREAGESVDIEHRAAWLLAKQE 228 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G+ + L + +R +L Q+L E K TG L Sbjct: 229 RNGFPFNTKAIEELYVELAAKRAELLQKLTETFGSWYQPKGGKELFKHP---RTGKPLPS 285 >gi|42520711|ref|NP_966626.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410451|gb|AAS14560.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila melanogaster] Length = 206 Score = 74.8 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 34/206 (16%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 + ++ +D E G+ + + L F+D L +D P L++ Sbjct: 19 IRSIAVDTE--------AMGLLHSRD--RLCLVQLSFNDGNAHLVQLKNDYTAP-NLRKI 67 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALK 117 LE+ ++T + H + F+ ++++ + CT + +R +LK + L Sbjct: 68 LEDKNITKIFHFARFDVSIIRYYL--ETWALPCYCTKIASRLVRTYTDNHSLKELCLEL- 124 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 L + K + + N Y DV I ++L+ Sbjct: 125 -----------LDTKLNKQQQSSDWGNENLT------DKQKSYAASDVLYLHRIKEKLDL 167 Query: 178 LSSKEQELWYLDQTINDRGYCVDVAL 203 + +E + +++ L Sbjct: 168 MLERENRKELAQKCFEFLPTRIELDL 193 >gi|311112135|ref|YP_003983357.1| DNA-directed DNA polymerase [Rothia dentocariosa ATCC 17931] gi|310943629|gb|ADP39923.1| DNA-directed DNA polymerase [Rothia dentocariosa ATCC 17931] Length = 650 Score = 74.8 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 63/487 (12%), Positives = 131/487 (26%), Gaps = 121/487 (24%) Query: 187 YLDQTINDRGYCVDVALAHTLNQIVD----------VERTKLDQELESLTYGLVSSSRCL 236 + I G D A + + +L +++ + + + Sbjct: 245 LVAAEIEYYGIPFDTAAHDAHLTEILGPRPPEGEHPAKLMELAEQIRADLFAPHLNPDSP 304 Query: 237 EKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L G+++ + + + ++ + + R Sbjct: 305 QELLRALHAA-GVNVPSTRSYVLKGWAEETATQRERRWALIEPILRY-KKLYRIFTANGW 362 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + ++ +GR R L+ GA+ TGRW LP Sbjct: 363 SWADSWVRNGRFRPHLEVGGAA-TGRWGASGGGALQLP---------------------- 399 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY-VT 411 +RS ++A EG+ +V+D + IE R+LA ++ ++ A + + Sbjct: 400 ---------AEIRSAILAPEGEVFLVSDGSQIEPRILAALSHDEALASAGRGTDMYAGIA 450 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 AR VA + KV LA+ Y G + + Sbjct: 451 ELARLEGVALTERA-----QAKVGLLAIMYGGRSGEIGALLP----------------HV 489 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + A F F+G + +++ + Sbjct: 490 AKLFPRAMEFTERAARIGEVGGQVTTFLGRTSPAPDERFKRT----------VADRSTPA 539 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 E+ ++R + ++ + + GR +R T R Sbjct: 540 AESRAVSLSRSYGRMTRNFVVQGTAAEWALCWMGRVR-------SRLLTETVFGMPMRT- 591 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM 651 IV +HDE++ P + + Sbjct: 592 -------------------------------KIVYFLHDELLLCGPKLEAERVERILR-- 618 Query: 652 TSNPSWA 658 S A Sbjct: 619 ESAAEAA 625 >gi|114769797|ref|ZP_01447407.1| exonuclease, putative [alpha proteobacterium HTCC2255] gi|114549502|gb|EAU52384.1| exonuclease, putative [alpha proteobacterium HTCC2255] gi|161170293|gb|ABX59263.1| 5-exonuclease family protein [uncultured marine bacterium EB000_55B11] gi|297183821|gb|ADI19944.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 204 Score = 74.8 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 58/212 (27%), Gaps = 33/212 (15%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 + ID ET + + + F D + D + + L Sbjct: 19 IVAIDTETMGLNPMRD----------RLCVIQFSSGDGHAHIVQIEPDAPQAPNICKILL 68 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119 + + + H + F+ +LK F ++I CT + ++ LK + + Sbjct: 69 DQNKVKLFHFARFDIAILKHHFKINISP--VYCTKIASKLVRTYTNKHGLKNLLREM--- 123 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 L K + + EY DV ++ +L Sbjct: 124 ---------LSIEISKQQQSSDWGASELTKAQI------EYAASDVLYLHKLMDKLNLNL 168 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 +E + N + LA + Sbjct: 169 KRENRYEIAEACFNFLPMRATLDLAGWSEDDI 200 >gi|319898371|ref|YP_004158464.1| Ribonuclease D [Bartonella clarridgeiae 73] gi|319402335|emb|CBI75874.1| Ribonuclease D [Bartonella clarridgeiae 73] Length = 193 Score = 74.8 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 46/174 (26%), Gaps = 31/174 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ L LE+ Sbjct: 9 IAIDTET--------LGLKPHRD--RLCVVQLSSGDGTADIIQVAKGQNRAPNLVALLED 58 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 +T + H F+ +L F + CT + ++ ++ Sbjct: 59 KAITKIFHFGRFDLAILAHTFG--VIPDVVFCTKIASKL-----------------TRTY 99 Query: 124 EEGKELIARFCKGETHECLYDRN-KPNHREAWRLF-GEYCKGDVTVTREIFKRL 175 + L + + +A EY DV + Sbjct: 100 TDRHGLKEICSELLNINISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKNIF 153 >gi|300742225|ref|ZP_07072246.1| putative DNA polymerase I [Rothia dentocariosa M567] gi|300381410|gb|EFJ77972.1| putative DNA polymerase I [Rothia dentocariosa M567] Length = 579 Score = 74.8 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 63/487 (12%), Positives = 132/487 (27%), Gaps = 121/487 (24%) Query: 187 YLDQTINDRGYCVDVALAHTLNQIVD----------VERTKLDQELESLTYGLVSSSRCL 236 + I G D A+ + + +L +++ + + + Sbjct: 174 LVAAEIEYYGIPFDTAVHDAHLTEILGPRPPEGEHPAKLMELAEQIRADLFAPHLNPDSP 233 Query: 237 EKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L G+++ + + + ++ + + R Sbjct: 234 QELLRALHAA-GVNVPSTRSYVLKGWAEETATQRERRWVLIEPILRY-KKLYRIFTANGW 291 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + ++ +GR R L+ GA+ TGRW LP Sbjct: 292 SWADSWVRNGRFRPHLEVGGAA-TGRWGASGGGALQLP---------------------- 328 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY-VT 411 +RS ++A EG+ +V+D + IE R+LA ++ ++ A + + Sbjct: 329 ---------AEIRSAILAPEGEVFLVSDGSQIEPRILAALSHDEALASAGRGTDMYTGIA 379 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 AR VA + KV LA+ Y G + + Sbjct: 380 ELARLEGVALTERA-----QAKVGLLAIMYGGRSGEIGALLP----------------HV 418 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + A F F+G + +++ + Sbjct: 419 AKLFPRAMEFTERAARIGEVGGQVTTFLGRTSPTPDERFKRT----------VADRSTPA 468 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 E+ ++R + ++ + + GR +R T R Sbjct: 469 AESRAVSLSRSYGRMTRNFVVQGTAAEWALCWMGRVR-------SRLLTETVFGMPMRT- 520 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM 651 IV +HDE++ P + + Sbjct: 521 -------------------------------KIVYFLHDELLLCGPKLEAERVERILR-- 547 Query: 652 TSNPSWA 658 S A Sbjct: 548 ESAAEAA 554 >gi|260460457|ref|ZP_05808708.1| 3'-5' exonuclease [Mesorhizobium opportunistum WSM2075] gi|259033562|gb|EEW34822.1| 3'-5' exonuclease [Mesorhizobium opportunistum WSM2075] Length = 206 Score = 74.8 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 58/212 (27%), Gaps = 35/212 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ L L N Sbjct: 22 VAIDTET--------LGLNPHRD--RLCVVQISPGDGSADVIQIAPGQKKAPNLVSLLRN 71 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLS 119 +T + H F+ VL F + CT + +R LK + E L + Sbjct: 72 RGITKLFHYGRFDLAVLYNAFG--VMPEPVFCTKIASRLTRTYTDRHGLKDICFELLGVG 129 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++ + A E EY DV + L Sbjct: 130 LSKAQQSSDWAAEILSPEQ-------------------LEYAASDVLYLHRLRDVLSGRL 170 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 +++ D + L + + Sbjct: 171 ARDGRTKEADACFRFLPTRAKLDLMGWGEEDI 202 >gi|158334839|ref|YP_001516011.1| ribonuclease D [Acaryochloris marina MBIC11017] gi|158305080|gb|ABW26697.1| ribonuclease D [Acaryochloris marina MBIC11017] Length = 209 Score = 74.8 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 58/204 (28%), Gaps = 26/204 (12%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 + +D ET G+ + + + L + V + + LK+ + Sbjct: 25 DRIAVDTET--------MGLKPHRD--RLCLVQICNPEGQVTVVRIAQGQMDAPNLKQLM 74 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 E+ V V H + F+ L +++ CT + ++ L Sbjct: 75 ESDTVLKVFHFARFDIATLLHHLDIETMP--IFCTKIASKLVR------TYSPRHGL--- 123 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 KEL+ E + + N Y DV L + + Sbjct: 124 -----KELVRELVGEELDKSAQSSDWGNAENLSEEQLNYASNDVRYLLSAQATLVKMLER 178 Query: 182 EQELWYLDQTINDRGYCVDVALAH 205 E+ L V + L H Sbjct: 179 EERLELAMACFQCLPTIVTLDLMH 202 >gi|39995551|ref|NP_951502.1| ribonuclease D [Geobacter sulfurreducens PCA] gi|39982314|gb|AAR33775.1| ribonuclease D, putative [Geobacter sulfurreducens PCA] Length = 381 Score = 74.8 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 56/182 (30%), Gaps = 27/182 (14%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73 DL + Y E V L F + + + P L N + V H + Sbjct: 32 CDLEADSMHHYQE--KVCLIQFAVPGYAAIVDPLAAPDISP--LAPLFANAAIRKVFHGA 87 Query: 74 YFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKA-VGEALKLSSQKMEEGKELIA 131 ++ L F +++ T++ + G L A + + + K + + Sbjct: 88 DYDIRSLHRDFGIEVN--NLFDTMIACQLLGEREFGLAAQLRKRFGVELDKQYQRADWSR 145 Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191 R EY D T+ E++++L ++ ++++ Sbjct: 146 RPLTVG-------------------MIEYAVKDTTLLIELYRQLVAELEEKGRRGWVEEE 186 Query: 192 IN 193 Sbjct: 187 CE 188 >gi|163842395|ref|YP_001626799.1| hypothetical protein BSUIS_A0125 [Brucella suis ATCC 23445] gi|163673118|gb|ABY37229.1| Hypothetical protein BSUIS_A0125 [Brucella suis ATCC 23445] Length = 205 Score = 74.4 bits (181), Expect = 5e-11, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 48/179 (26%), Gaps = 31/179 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ L + L++ Sbjct: 21 VAIDTET--------LGLNPHRD--RLCVVQISPGDGTADVIQIEAGQKKAPNLVKLLKD 70 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 +T + H F+ VL F CT + ++ ++ Sbjct: 71 RSITKIFHFGRFDLAVLAHAFG--TMPQPVFCTKIASKL-----------------TRTY 111 Query: 124 EEGKELIARFCKGETHECLYDRNKPN--HREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 + L + + + + EY DV + LE Sbjct: 112 TDRHGLKEICSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLE 170 >gi|322829565|gb|EFZ32905.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma cruzi] Length = 1404 Score = 74.4 bits (181), Expect = 5e-11, Method: Composition-based stats. Identities = 37/330 (11%), Positives = 84/330 (25%), Gaps = 85/330 (25%) Query: 353 DPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 + + +R ++ G+K V D + +E VLA + G+ + G D ++ Sbjct: 1087 CQNIPKDDKSPIRRLFVSRFGEKGRCVELDYSQLEIVVLALLCGDPRLVSDLNRGVDFHI 1146 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 + + ++ K GY+ G + ++ Sbjct: 1147 KRASFFSGLPYDEIYK-------------GYKRGIPEYVQL------------------- 1174 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 +F R P E + +++ + + + + Sbjct: 1175 --RRTAKTFSFQRLYGAGVPLLHKTTGIPVEDLEASIRKEEEEYPGIMQFHRLVRTVALR 1232 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 G + LP+G + + + Sbjct: 1233 AENPGLPTHFV------------------VELPTGIRISF---------------KTRDV 1259 Query: 591 YTYGGKLTENIVQAVSRDILAEGMM----------NATKAGYDIVLTVHDEIVCETPDTD 640 + +Q + LA+ M+ + +V VHD + + Sbjct: 1260 VLNLPPVKNYPIQGFGAE-LAQMMVGRVFRHFVRRDFYGQKAFMVNFVHDSLWLDCHLDV 1318 Query: 641 EFNA-----SMLYHLMTSNPSWAKGLPLKA 665 +L + T G+ LK Sbjct: 1319 LEECIRETRDILTEVHTYVAKAFPGVELKV 1348 >gi|288956945|ref|YP_003447286.1| ribonuclease D [Azospirillum sp. B510] gi|288909253|dbj|BAI70742.1| ribonuclease D [Azospirillum sp. B510] Length = 208 Score = 74.4 bits (181), Expect = 5e-11, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 54/179 (30%), Gaps = 33/179 (18%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + L D V L LK L + Sbjct: 25 VAIDTET--------MGLNPHRD--RLCLVQLSAGDGAVHLVQFRPGRYEAPNLKRLLTD 74 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 VT + H + F+ V+KA +D CT V ++ LK + + L Sbjct: 75 PGVTKLFHFARFDVAVMKAYLGVDCRP--VYCTKVASKLVRTFTDRHGLKDLCKDL---- 128 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 L K + + Y DV ++ +L+ + Sbjct: 129 --------LGVEISKQQQSSDWGAPELTTDQMK------YAASDVLHLHDLKAKLDVML 173 >gi|121602332|ref|YP_989471.1| 3'-5' exonuclease domain-containing protein [Bartonella bacilliformis KC583] gi|120614509|gb|ABM45110.1| 3'-5' exonuclease domain protein [Bartonella bacilliformis KC583] Length = 206 Score = 74.4 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 21/170 (12%), Positives = 45/170 (26%), Gaps = 31/170 (18%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ L + L + Sbjct: 22 VAIDTET--------LGLQPHRD--RLCVVQLSSGDGTADIIQIAKGQNSAPNLVKLLAD 71 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 +T + H F+ +L F + CT + ++ ++ Sbjct: 72 KAITKIFHFGRFDLAILAHTFGI--MPDAVFCTKIASKL-----------------TRTY 112 Query: 124 EEGKELIARFCKGETHECLYDRN-KPNHREAWRLF-GEYCKGDVTVTREI 171 + L + + E EY DV + Sbjct: 113 TDRHGLKEICSELLNVNISKQQQSSDWAAETLSRAQIEYAASDVLYLHRL 162 >gi|167600469|ref|YP_001671968.1| hypothetical protein PPLUZ19_gp24 [Pseudomonas phage LUZ19] gi|161168332|emb|CAP45496.1| hypothetical protein [Pseudomonas phage LUZ19] Length = 348 Score = 74.4 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 25/193 (12%) Query: 2 ATLFIDFETR------SPIDLTKCGICKYAEDVCVILFAFGF-DDHPVELWDCVHDP--- 51 L +D ET + G+ + D ++ F + V DC DP Sbjct: 94 KVLSLDIETSPIEGWVWSLWKQNVGLNQIKRDWTILSFCAKWMHSDEVIYMDCQGDPLDD 153 Query: 52 -VMPQVLKEALENTDVTIVAHNSY-FER-TVLKACFNLDIPI---HRWICTLVLARSNGL 105 + L + L+ D+ IV N F+ + F +P + I TL++A+ Sbjct: 154 MHLLVALHKLLDEADIIIV-QNGKRFDVPKINARFFLNKMPPPRPFKVIDTLIIAK---- 208 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 L+ + K K R L+ ++ EAW Y DV Sbjct: 209 -QQFAFTSRKLEYMTHKACTIK---KRLHGKFPGFDLWAACLQDNPEAWEEMRLYNIDDV 264 Query: 166 TVTREIFKRLEPL 178 E++ + P Sbjct: 265 RSMEELYILMRPW 277 >gi|17988111|ref|NP_540745.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M] gi|62289101|ref|YP_220894.1| 3-5 exonuclease family protein [Brucella abortus bv. 1 str. 9-941] gi|82699039|ref|YP_413613.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308] gi|148559185|ref|YP_001258158.1| 3'-5' exonuclease family protein [Brucella ovis ATCC 25840] gi|189023376|ref|YP_001934144.1| 3'-5' exonuclease [Brucella abortus S19] gi|225626663|ref|ZP_03784702.1| ribonuclease D [Brucella ceti str. Cudo] gi|225851660|ref|YP_002731893.1| hypothetical protein BMEA_A0127 [Brucella melitensis ATCC 23457] gi|237814593|ref|ZP_04593591.1| ribonuclease D [Brucella abortus str. 2308 A] gi|254690430|ref|ZP_05153684.1| hypothetical protein Babob68_09714 [Brucella abortus bv. 6 str. 870] gi|254694918|ref|ZP_05156746.1| hypothetical protein Babob3T_09702 [Brucella abortus bv. 3 str. Tulya] gi|254696124|ref|ZP_05157952.1| hypothetical protein Babob28_00020 [Brucella abortus bv. 2 str. 86/8/59] gi|254700933|ref|ZP_05162761.1| hypothetical protein Bsuib55_08749 [Brucella suis bv. 5 str. 513] gi|254707182|ref|ZP_05169010.1| hypothetical protein BpinM_09468 [Brucella pinnipedialis M163/99/10] gi|254709273|ref|ZP_05171084.1| hypothetical protein BpinB_03206 [Brucella pinnipedialis B2/94] gi|254713304|ref|ZP_05175115.1| hypothetical protein BcetM6_08117 [Brucella ceti M644/93/1] gi|254716342|ref|ZP_05178153.1| hypothetical protein BcetM_07890 [Brucella ceti M13/05/1] gi|254731461|ref|ZP_05190039.1| hypothetical protein Babob42_09744 [Brucella abortus bv. 4 str. 292] gi|256030796|ref|ZP_05444410.1| hypothetical protein BpinM2_09123 [Brucella pinnipedialis M292/94/1] gi|256045912|ref|ZP_05448786.1| hypothetical protein Bmelb1R_15494 [Brucella melitensis bv. 1 str. Rev.1] gi|256060264|ref|ZP_05450439.1| hypothetical protein Bneo5_07870 [Brucella neotomae 5K33] gi|256112626|ref|ZP_05453547.1| hypothetical protein Bmelb3E_08085 [Brucella melitensis bv. 3 str. Ether] gi|256158817|ref|ZP_05456678.1| hypothetical protein BcetM4_08038 [Brucella ceti M490/95/1] gi|256254202|ref|ZP_05459738.1| hypothetical protein BcetB_07895 [Brucella ceti B1/94] gi|256258682|ref|ZP_05464218.1| hypothetical protein Babob9C_15316 [Brucella abortus bv. 9 str. C68] gi|256264829|ref|ZP_05467361.1| 3'-5' exonuclease [Brucella melitensis bv. 2 str. 63/9] gi|256368584|ref|YP_003106090.1| 3'-5' exonuclease family protein [Brucella microti CCM 4915] gi|260169700|ref|ZP_05756511.1| 3'-5' exonuclease family protein [Brucella sp. F5/99] gi|260546398|ref|ZP_05822138.1| 3'-5' exonuclease [Brucella abortus NCTC 8038] gi|260563197|ref|ZP_05833683.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. 16M] gi|260755977|ref|ZP_05868325.1| 3'-5' exonuclease [Brucella abortus bv. 6 str. 870] gi|260759201|ref|ZP_05871549.1| 3'-5' exonuclease [Brucella abortus bv. 4 str. 292] gi|260760489|ref|ZP_05872835.1| 3'-5' exonuclease [Brucella abortus bv. 2 str. 86/8/59] gi|260884998|ref|ZP_05896612.1| 3'-5' exonuclease [Brucella abortus bv. 9 str. C68] gi|261215252|ref|ZP_05929533.1| 3'-5' exonuclease [Brucella abortus bv. 3 str. Tulya] gi|261218123|ref|ZP_05932404.1| 3'-5' exonuclease [Brucella ceti M13/05/1] gi|261221350|ref|ZP_05935631.1| 3'-5' exonuclease [Brucella ceti B1/94] gi|261314663|ref|ZP_05953860.1| 3'-5' exonuclease [Brucella pinnipedialis M163/99/10] gi|261316779|ref|ZP_05955976.1| 3'-5' exonuclease [Brucella pinnipedialis B2/94] gi|261321030|ref|ZP_05960227.1| 3'-5' exonuclease [Brucella ceti M644/93/1] gi|261324237|ref|ZP_05963434.1| 3'-5' exonuclease [Brucella neotomae 5K33] gi|261751448|ref|ZP_05995157.1| 3'-5' exonuclease [Brucella suis bv. 5 str. 513] gi|261759236|ref|ZP_06002945.1| 3'-5' exonuclease [Brucella sp. F5/99] gi|265987850|ref|ZP_06100407.1| 3'-5' exonuclease [Brucella pinnipedialis M292/94/1] gi|265992324|ref|ZP_06104881.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. Rev.1] gi|265994066|ref|ZP_06106623.1| 3'-5' exonuclease [Brucella melitensis bv. 3 str. Ether] gi|265997310|ref|ZP_06109867.1| 3'-5' exonuclease [Brucella ceti M490/95/1] gi|294851524|ref|ZP_06792197.1| ribonuclease D [Brucella sp. NVSL 07-0026] gi|297247517|ref|ZP_06931235.1| 3'-5' exonuclease [Brucella abortus bv. 5 str. B3196] gi|306842591|ref|ZP_07475240.1| 3'-5' exonuclease [Brucella sp. BO2] gi|17983864|gb|AAL53009.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M] gi|62195233|gb|AAX73533.1| 3-5 exonuclease family protein [Brucella abortus bv. 1 str. 9-941] gi|82615140|emb|CAJ10073.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308] gi|148370442|gb|ABQ60421.1| 3'-5' exonuclease family protein [Brucella ovis ATCC 25840] gi|189018948|gb|ACD71670.1| 3'-5' exonuclease [Brucella abortus S19] gi|225618320|gb|EEH15363.1| ribonuclease D [Brucella ceti str. Cudo] gi|225640025|gb|ACN99938.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|237789430|gb|EEP63640.1| ribonuclease D [Brucella abortus str. 2308 A] gi|255998742|gb|ACU47141.1| 3'-5' exonuclease family protein [Brucella microti CCM 4915] gi|260096505|gb|EEW80381.1| 3'-5' exonuclease [Brucella abortus NCTC 8038] gi|260153213|gb|EEW88305.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. 16M] gi|260669519|gb|EEX56459.1| 3'-5' exonuclease [Brucella abortus bv. 4 str. 292] gi|260670924|gb|EEX57745.1| 3'-5' exonuclease [Brucella abortus bv. 2 str. 86/8/59] gi|260676085|gb|EEX62906.1| 3'-5' exonuclease [Brucella abortus bv. 6 str. 870] gi|260874526|gb|EEX81595.1| 3'-5' exonuclease [Brucella abortus bv. 9 str. C68] gi|260916859|gb|EEX83720.1| 3'-5' exonuclease [Brucella abortus bv. 3 str. Tulya] gi|260919934|gb|EEX86587.1| 3'-5' exonuclease [Brucella ceti B1/94] gi|260923212|gb|EEX89780.1| 3'-5' exonuclease [Brucella ceti M13/05/1] gi|261293720|gb|EEX97216.1| 3'-5' exonuclease [Brucella ceti M644/93/1] gi|261296002|gb|EEX99498.1| 3'-5' exonuclease [Brucella pinnipedialis B2/94] gi|261300217|gb|EEY03714.1| 3'-5' exonuclease [Brucella neotomae 5K33] gi|261303689|gb|EEY07186.1| 3'-5' exonuclease [Brucella pinnipedialis M163/99/10] gi|261739220|gb|EEY27216.1| 3'-5' exonuclease [Brucella sp. F5/99] gi|261741201|gb|EEY29127.1| 3'-5' exonuclease [Brucella suis bv. 5 str. 513] gi|262551778|gb|EEZ07768.1| 3'-5' exonuclease [Brucella ceti M490/95/1] gi|262765047|gb|EEZ10968.1| 3'-5' exonuclease [Brucella melitensis bv. 3 str. Ether] gi|263003390|gb|EEZ15683.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. Rev.1] gi|263095285|gb|EEZ18912.1| 3'-5' exonuclease [Brucella melitensis bv. 2 str. 63/9] gi|264660047|gb|EEZ30308.1| 3'-5' exonuclease [Brucella pinnipedialis M292/94/1] gi|294820113|gb|EFG37112.1| ribonuclease D [Brucella sp. NVSL 07-0026] gi|297174686|gb|EFH34033.1| 3'-5' exonuclease [Brucella abortus bv. 5 str. B3196] gi|306287236|gb|EFM58724.1| 3'-5' exonuclease [Brucella sp. BO2] gi|326408140|gb|ADZ65205.1| 3'-5' exonuclease [Brucella melitensis M28] gi|326537851|gb|ADZ86066.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 205 Score = 74.4 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 48/179 (26%), Gaps = 31/179 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ L + L++ Sbjct: 21 VAIDTET--------LGLNPHRD--RLCVVQISPGDGTADVIQIEAGQKKAPNLVKLLKD 70 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 +T + H F+ VL F CT + ++ ++ Sbjct: 71 RSITKIFHFGRFDLAVLAHAFG--TMPQPVFCTKIASKL-----------------TRTY 111 Query: 124 EEGKELIARFCKGETHECLYDRNKPN--HREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 + L + + + + EY DV + LE Sbjct: 112 TDRHGLKEICSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLE 170 >gi|58698542|ref|ZP_00373443.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae] gi|58534924|gb|EAL59022.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae] Length = 234 Score = 74.4 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 68/205 (33%), Gaps = 34/205 (16%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 ++ +D E G+ + + L F+D L +D P L++ L Sbjct: 48 RSIAVDTE--------AMGLLHGRD--RLCLVQLSFNDGNAHLVQLKNDYTAP-NLRKIL 96 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKL 118 E+ ++T + H + F+ ++++ + CT + +R +LK + L Sbjct: 97 EDKNITKIFHFARFDVSIIRYYL--ETWALPCYCTKIASRLVRTYTDNHSLKELCLEL-- 152 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 L + K + + N Y DV I ++L+ + Sbjct: 153 ----------LDTKLNKQQQSSDWGNENLT------DKQKSYAASDVLYLHRIKEKLDLM 196 Query: 179 SSKEQELWYLDQTINDRGYCVDVAL 203 +E + +++ L Sbjct: 197 LERENRKELAQKCFEFLPTRIELDL 221 >gi|306844394|ref|ZP_07476984.1| 3'-5' exonuclease [Brucella sp. BO1] gi|306275207|gb|EFM56957.1| 3'-5' exonuclease [Brucella sp. BO1] Length = 205 Score = 74.4 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 48/179 (26%), Gaps = 31/179 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ L + L++ Sbjct: 21 VAIDTET--------LGLNPHRD--RLCVVQISPGDGTADVIQIDAGQKKAPNLVKLLKD 70 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 +T + H F+ VL F CT + ++ ++ Sbjct: 71 RSITKIFHFGRFDLAVLAHAFG--TMPQPVFCTKIASKL-----------------TRTY 111 Query: 124 EEGKELIARFCKGETHECLYDRNKPN--HREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 + L + + + + EY DV + LE Sbjct: 112 TDRHGLKEICSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLE 170 >gi|225630598|ref|YP_002727389.1| 3'-5' exonuclease [Wolbachia sp. wRi] gi|225592579|gb|ACN95598.1| 3'-5' exonuclease [Wolbachia sp. wRi] Length = 206 Score = 74.4 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 68/205 (33%), Gaps = 34/205 (16%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 ++ +D E G+ + + L F+D L +D P L++ L Sbjct: 20 RSIAVDTE--------AMGLLHGRD--RLCLVQLSFNDGNAHLVQLKNDYTAP-NLRKIL 68 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKL 118 E+ ++T + H + F+ ++++ + CT + +R +LK + L Sbjct: 69 EDKNITKIFHFARFDVSIIRYYL--ETWALPCYCTKIASRLVRTYTDNHSLKELCLEL-- 124 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 L + K + + N Y DV I ++L+ + Sbjct: 125 ----------LDTKLNKQQQSSDWGNENLT------DKQKSYAASDVLYLHRIKEKLDLM 168 Query: 179 SSKEQELWYLDQTINDRGYCVDVAL 203 +E + +++ L Sbjct: 169 LERENRKELAQKCFEFLPTRIELDL 193 >gi|157825707|ref|YP_001493427.1| ribonuclease D [Rickettsia akari str. Hartford] gi|157799665|gb|ABV74919.1| Ribonuclease D [Rickettsia akari str. Hartford] Length = 203 Score = 74.0 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 59/203 (29%), Gaps = 33/203 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + L F + L V+ LK L + Sbjct: 20 IAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFVNQDYTAPNLKALLLD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 + H + F+ +K ++D+ CT + ++ LK + L Sbjct: 70 KTRCKIFHFARFDLASIKQYLSIDLE--NIFCTKISSKLVRTYTDNHGLKDLCREL---- 123 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 L K + N EY DV ++ L+ + Sbjct: 124 --------LNINISKQQQSSYWGTDNLS------SEQKEYAAKDVLYLHQLKDMLQKMLL 169 Query: 181 KEQELWYLDQTINDRGYCVDVAL 203 +E L ++ L Sbjct: 170 RENRLELAHDIFRFLPTRANLDL 192 >gi|209883609|ref|YP_002287466.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5] gi|209871805|gb|ACI91601.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5] Length = 204 Score = 74.0 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 57/198 (28%), Gaps = 33/198 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ LK+ L + Sbjct: 20 VAIDTET--------LGLNPHRD--RLCVVQLSNGDGTADVVQIPAGHTDAPNLKKLLAD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 VT + H + F+ VL+ F + CT + ++ LK + L Sbjct: 70 PMVTKLFHFARFDIAVLEHAFGVMTQP--IYCTKIASKLVRTYTDRHGLKDLVREL---- 123 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 L K + + Y DV + ++L+ + + Sbjct: 124 --------LGVEISKQQQSSDWGAEKLSEAQ------LTYAASDVLHLHALREKLDTMLA 169 Query: 181 KEQELWYLDQTINDRGYC 198 +E + Sbjct: 170 RENRMDLAKSCFEFLPTR 187 >gi|326778493|ref|ZP_08237758.1| DNA-directed DNA polymerase [Streptomyces cf. griseus XylebKG-1] gi|326658826|gb|EGE43672.1| DNA-directed DNA polymerase [Streptomyces cf. griseus XylebKG-1] Length = 558 Score = 74.0 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 53/402 (13%), Positives = 106/402 (26%), Gaps = 115/402 (28%) Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 F G+ ++ + + P + + R + ++ +GR Sbjct: 234 FARAGIPVKSTRRWELEEL------DHPAVEPLIAY-KKLYRIWTAHGWSWLQDWVREGR 286 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 R G + +GRW+ +P+ Sbjct: 287 FRPEY-QPGGTVSGRWTTNGGGALQIPK-------------------------------V 314 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R V+A G +LVVAD +E RVLA ++ ++ ++ DLY + Sbjct: 315 IRQAVVADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGHDGDLYKALS--------DR 366 Query: 424 VTKDQRAIGKVMELALGYQGGAK-AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 R K+ L Y + + +A+ + A + Sbjct: 367 AFSGDREHAKLALLGAVYGQTSGDGLKNLAAL-----------------RRRFPLAVAYV 409 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 E + ++G A + + + + + +G AR Sbjct: 410 DDAARAGEEGRVVRTWLGRTSPPAASAGQDEEAGLPQ----EDPEGSGGAPDGGPARARG 465 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 R V + +LML + R ++ Sbjct: 466 RFTRNFVVQGSAADWALLMLAALRRTIFE------------------------------- 494 Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644 Q + +V HDE++ P + Sbjct: 495 QGL---------------RAQLVFFQHDEVIVHCPAEESAAV 521 >gi|116249870|ref|YP_765708.1| ribonuclease [Rhizobium leguminosarum bv. viciae 3841] gi|115254518|emb|CAK05592.1| putative ribonuclease [Rhizobium leguminosarum bv. viciae 3841] Length = 208 Score = 74.0 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 49/208 (23%), Gaps = 27/208 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET + + + D ++ L LE+ Sbjct: 24 IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADIIRIAAGQKEAPNLVALLED 73 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 + H F+ VL F + CT + +R + L K Sbjct: 74 PTHQKIFHYGRFDIAVLFHTF--SVTTTPVFCTKIASRLIR------TYTDRHGL---KD 122 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 + L K + + EY DV + +L ++ Sbjct: 123 NLKEMLDVDVSKAQQSSDWAAERLSPAQ------LEYAASDVLYLHALRDKLTERLIRDG 176 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIV 211 + + L + Sbjct: 177 RYDHATACFEFLPTRAKLDLLGWEEADI 204 >gi|226361457|ref|YP_002779235.1| DNA polymerase [Rhodococcus opacus B4] gi|226239942|dbj|BAH50290.1| putative DNA polymerase [Rhodococcus opacus B4] Length = 513 Score = 74.0 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 51/367 (13%), Positives = 97/367 (26%), Gaps = 88/367 (23%) Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269 + + E+ + ++ + +E + F G+ L + + V Sbjct: 176 DLPQRIQDVSVEIGAAFGRRINPASHVEVVDA--FRREGIELASTRKHLLREV------D 227 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P + ++R S+ +++ D R R G +GRW+ + Sbjct: 228 HPAVPLLLHHR-DLSKLFSTNGWQWLDSWVRDNRFRPVY-VPGGVVSGRWASRGGGALQI 285 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P+P +RS VIA G V+AD +E R+L Sbjct: 286 PKP-------------------------------LRSSVIADPGHTFVIADAGQLEPRIL 314 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A M+G+ + A + A+ R KV L + Y A Sbjct: 315 AAMSGDTRMVAA---------AGADDLYAPVAAETFDGDRGKAKVAILGVLYGATAG--- 362 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 + A + + ++G AC Sbjct: 363 -------------EARSLLTLLRTRFPVAVEYVERAARAGERGEVVHSWLGRACP----- 404 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + W+ +R R V + +L R + Sbjct: 405 -----PPSPDFWSHGDA------------RSRGRFTRNFVVQATASEWALCVLADLRRRL 447 Query: 570 YRDVGNN 576 + + Sbjct: 448 ADEPDSE 454 >gi|111019317|ref|YP_702289.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1] gi|110818847|gb|ABG94131.1| probable DNA-directed DNA polymerase [Rhodococcus jostii RHA1] Length = 513 Score = 74.0 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 53/367 (14%), Positives = 96/367 (26%), Gaps = 88/367 (23%) Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269 + + E+ S ++ + +E + F G+ L + + V Sbjct: 176 DLPQRIQDVTVEIGSAFGRRINPASHVEVVDA--FRREGIELASTRKHLLREV------D 227 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P + +R S+ +++ D R R G +GRW+ + Sbjct: 228 HPAVPLLLRHR-DLSKLFSTNGWQWLDSWVRDDRFRPVY-VPGGVVSGRWASRGGGALQI 285 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P+P +RS VIA G V+AD +E R+L Sbjct: 286 PKP-------------------------------LRSSVIADPGHTFVIADAGQLEPRIL 314 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A M+G+ + A + A+ R KV L + Y A Sbjct: 315 AAMSGDARMVAA---------AGADDLYAPVAAETFDGDRGKAKVAILGVLYGATAG--- 362 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 + A + + ++G AC Sbjct: 363 -------------EARSLLTLLRTRFPVAVEYVERAARAGERGEVVHSWLGRACP----- 404 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + W+ +R R V + +L R + Sbjct: 405 -----PPSPDFWSHGDA------------RSRGRFTRNFVVQATAAEWALCVLADLRRRL 447 Query: 570 YRDVGNN 576 D + Sbjct: 448 ADDPDSE 454 >gi|33321977|gb|AAQ06707.1|AF496050_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis] Length = 80 Score = 74.0 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 5/81 (6%) Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF + GL + T+ +T VL+ K+ +P + R S+ Sbjct: 1 NSPKQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPXVSDILEYRQ-ISKIQSTY 59 Query: 291 LNTLVEAMNS-DGRLRGTLQF 310 + L++ ++ DGR+ Sbjct: 60 VKGLLDVIDERDGRIHTRYLQ 80 >gi|88608093|ref|YP_506413.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str. Miyayama] gi|88600262|gb|ABD45730.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str. Miyayama] Length = 206 Score = 73.6 bits (179), Expect = 9e-11, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 63/211 (29%), Gaps = 33/211 (15%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID E+ ++ + L D L LK L + Sbjct: 21 IAIDTESMGLVN----------RRDRLCLVQLSTGDGTAHLVRFNGTDYSAPRLKSLLVD 70 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 V + H + F+ +L+ + CT + +R +LK + L L Sbjct: 71 PAVIKIFHFARFDIAILRHYLG--VLTENCYCTKIASRLVRTYTDHHSLKELC--LDLLG 126 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++ +GK+ T R Y DV I + L+ + Sbjct: 127 VRLNKGKQSSDWGSTSLT----------------REQMSYAASDVLYLHAIKEALDVMLK 170 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 +E+ + Y ++ L NQ + Sbjct: 171 REKRIELARACFQFLPYRAELDLLGWENQDI 201 >gi|315122172|ref|YP_004062661.1| ribonuclease D [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495574|gb|ADR52173.1| ribonuclease D [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 209 Score = 73.6 bits (179), Expect = 9e-11, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 51/205 (24%), Gaps = 35/205 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + +D ET I + + D ++ + L L N Sbjct: 23 IAVDTETLGLIP----------RRDRLCVVQLSPGDGTADIIRIAAEQKNAPNLVTMLAN 72 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS----NGLPSALKAVGEALKLS 119 + H + F+ VL F + + CT + +R + E L + Sbjct: 73 ETQEKIFHYARFDIAVLFYTFGVRVKP--IFCTKIASRLTRTYIDRHGLKDNLRELLGVD 130 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++ + + + +Y DV + ++ Sbjct: 131 ISKKQQLSDW-------------------SEDDLSHEQLQYAASDVVHLHALREKFIAKL 171 Query: 180 SKEQELWYLDQTINDRGYCVDVALA 204 N ++ L Sbjct: 172 QSLGRSDVASACFNFLMSRAELDLL 196 >gi|157866092|ref|XP_001681752.1| mitochondrial DNA polymerase I protein B [Leishmania major strain Friedlin] gi|68125051|emb|CAJ02395.1| putative mitochondrial DNA polymerase I protein B [Leishmania major strain Friedlin] Length = 1429 Score = 73.6 bits (179), Expect = 9e-11, Method: Composition-based stats. Identities = 46/422 (10%), Positives = 100/422 (23%), Gaps = 111/422 (26%) Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN----TLVEAMNSDGRLRGTLQFL 311 + + VL+S + + R R L + ++ DGR+ + + Sbjct: 1018 KVFSETVLASLHAHGVKPAGLLLQRQLLDRHTSTFLQPSTGGRLAILHRDGRVHQHI-DM 1076 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 A+ T R QN+P+ +S VR ++ Sbjct: 1077 TATTTSRTVSAYPSCQNIPKDDKS---------------------------SVRRLFVSR 1109 Query: 372 EGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 G K V D + +E VLA + + +G D +V A + + Sbjct: 1110 FGSKGRCVEVDYSQLEIVVLAILCNDANLTNDLNSGVDFHVKRAAFFSGLPYDE------ 1163 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 YQG + K +F R Sbjct: 1164 ----------IYQGYKRNVPKYVK------------------LRRTAKQFSFQRLYGAGV 1195 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 P E + +++ +++ + + G Sbjct: 1196 PLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNNPGLPTSFI-------- 1247 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 +P+G + + + +Q ++ Sbjct: 1248 ----------AEMPTGLRMSL---------------RTRDVVLNLPPIKNYPIQGYGAEL 1282 Query: 610 LAEGMMNATKA---------GYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSNPSWAK 659 + + ++ VHD + + ++ S + Sbjct: 1283 AQMMLGRLYRHFVRKDFYDDRAFLINFVHDSVWMDCHVDVLRECVRDTCRILGSVHEYVP 1342 Query: 660 GL 661 + Sbjct: 1343 KV 1344 >gi|23501034|ref|NP_697161.1| 3'-5' exonuclease family protein [Brucella suis 1330] gi|161618108|ref|YP_001591995.1| hypothetical protein BCAN_A0123 [Brucella canis ATCC 23365] gi|254705301|ref|ZP_05167129.1| hypothetical protein Bsuib36_15553 [Brucella suis bv. 3 str. 686] gi|260567236|ref|ZP_05837706.1| 3'-5' exonuclease [Brucella suis bv. 4 str. 40] gi|261756011|ref|ZP_05999720.1| 3'-5' exonuclease [Brucella suis bv. 3 str. 686] gi|23346898|gb|AAN29076.1| 3'-5' exonuclease family protein [Brucella suis 1330] gi|161334919|gb|ABX61224.1| Hypothetical protein BCAN_A0123 [Brucella canis ATCC 23365] gi|260156754|gb|EEW91834.1| 3'-5' exonuclease [Brucella suis bv. 4 str. 40] gi|261745764|gb|EEY33690.1| 3'-5' exonuclease [Brucella suis bv. 3 str. 686] Length = 205 Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 31/179 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ D L + L++ Sbjct: 21 VAIDTET--------LGLNPHRD--RLCVVQISPGDGTADVIQIEADQKKAPNLVKLLKD 70 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 +T + H F+ VL F CT + ++ ++ Sbjct: 71 RSITKIFHFGRFDLAVLAHAFG--TMPQPVFCTKIASKL-----------------TRTY 111 Query: 124 EEGKELIARFCKGETHECLYDRNKPN--HREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 + L + + + + EY DV + LE Sbjct: 112 TDRHGLKEICSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLE 170 >gi|192288480|ref|YP_001989085.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1] gi|192282229|gb|ACE98609.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1] Length = 204 Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 55/184 (29%), Gaps = 33/184 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ LK+ L + Sbjct: 20 VAIDTET--------MGLHPHRD--RLCVVQLSNGDGSADVVQIPQGATDAPNLKKLLGD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 V + H + F+ L F + CT + +R LK + L Sbjct: 70 PAVVKIFHFARFDLAALYKAFG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREL---- 123 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 L K + + + + A Y DV + +L+ + + Sbjct: 124 --------LGIDLSKQQQSSDWGADSLSDAQLA------YAASDVLHLHALRDKLDTMLA 169 Query: 181 KEQE 184 +E Sbjct: 170 RENR 173 >gi|119713543|gb|ABL97595.1| putative exonuclease [uncultured marine bacterium EB0_39F01] Length = 204 Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 58/212 (27%), Gaps = 33/212 (15%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 + ID ET + + + F D + D + + L Sbjct: 19 IVAIDTETMGLNPMRD----------RLCVIQFSSGDGNAHIVQIEPDAPQAPNICKILL 68 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119 + + + H + F+ +LK F ++I CT + ++ LK + + Sbjct: 69 DQNKVKLFHFARFDIAILKHHFKINISP--VYCTKIASKLVRTYTNKHGLKNLLREM--- 123 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 L K + + EY DV ++ +L Sbjct: 124 ---------LSIEISKQQQSSDWGASELTKAQI------EYAASDVLYLHKLMDKLNLNL 168 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 +E + N + LA + Sbjct: 169 KRENRYEIAEACFNFLPMRATLDLAGWSEDDI 200 >gi|194100439|ref|YP_002003812.1| gp5 [Klebsiella phage K11] gi|193201378|gb|ACF15856.1| gp5 [Klebsiella phage K11] Length = 709 Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 50/474 (10%), Positives = 97/474 (20%), Gaps = 130/474 (27%) Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLE---DLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +V + + + L + E VL + P+ + + Sbjct: 335 EHVVFNPSSRDHIALKLKEAGWVPTEFTEKGAPKVDDEVLEHVRVGDPEKQRCIDLIKEY 394 Query: 284 SRSAV------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSH 336 + + DG++ G++ GA TGR + +P S Sbjct: 395 LMIQKRIGQAAEGDKAWLRYVQEDGKIHGSVNPNGA-VTGRATHSFPNLGQVPGVRSPYG 453 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 E P D +G+E R LA Sbjct: 454 EPCRAAFGAEHHLDGLTGQP-----------------WVQAGIDASGLELRCLAHF---- 492 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + ++ G V V R K Y G + Sbjct: 493 --MSKYDDGAYADVILNGDIHTVNQTAAELPTRDNAKTFIYGFLYGAGDEKI-------- 542 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + +KK + + Sbjct: 543 ------------------------------------GQIVGAGKERGKELKKKFLENTPA 566 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 ++ L + Q ++ K + + GR + R Sbjct: 567 IAALREGIQQTLVESSRWVAGEQKVKWKRR------------WIKGLDGRKVHVRSPHA- 613 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI------------ 624 ++Q+ I ++ + Sbjct: 614 --------------------ALNTLLQSAGALICKLWIVETEELLLKAGLKHGWDGDFAY 653 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673 + VHDEI ++ A + + L EG + Sbjct: 654 MAWVHDEIQVACRTSEI--AQQVIDIAQQAMRNVGDHFKFRCRLDTEGKMGPNW 705 >gi|114706944|ref|ZP_01439843.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506] gi|114537494|gb|EAU40619.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506] Length = 207 Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 51/189 (26%), Gaps = 17/189 (8%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET + + + D ++ + L + Sbjct: 20 VAIDTETLGLNTMRD----------RLCVVQLSPGDGTADVVQIAKGQTEAPNISALLAD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119 T + H + F+ L F CT + +R LK + L + Sbjct: 70 ASKTKIFHYARFDVAALYHAFG--AMTEGIFCTKIASRLTRTYTDRHGLKDLARELVGVD 127 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD-VTVTREIFKRLEPL 178 K ++ + + H L+ + D + + RE F+ L Sbjct: 128 LSKQQQSSDWAVETLSPAQLDYAASDVLYLHDIMGALYKRLEREDRMDLARECFRFLPMR 187 Query: 179 SSKEQELWY 187 + W Sbjct: 188 VRLDLAGWE 196 >gi|298504558|gb|ADI83281.1| ribonuclease D, putative [Geobacter sulfurreducens KN400] Length = 381 Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 53/182 (29%), Gaps = 27/182 (14%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73 DL + Y E V L F + + + P L N + V H + Sbjct: 32 CDLEADSMHHYQE--KVCLIQFAVPGYAAIVDPLAAPDISP--LAPLFANAAIRKVFHGA 87 Query: 74 YFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKA-VGEALKLSSQKMEEGKELIA 131 ++ L F +++ T++ + G L A + + + K + + Sbjct: 88 DYDIRSLHRDFGMEVN--NLFDTMIACQLLGEREFGLAAQLRKRFGVELDKQYQRADWSR 145 Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191 R EY D T+ E+ +L + ++++ Sbjct: 146 RPLTPG-------------------MIEYAVKDTTLLIELCWQLATDLEAKGRRGWVEEE 186 Query: 192 IN 193 Sbjct: 187 CE 188 >gi|322489448|emb|CBZ24706.1| mitochondrial DNA polymerase I protein B,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 1429 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 51/423 (12%), Positives = 107/423 (25%), Gaps = 113/423 (26%) Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN----TLVEAMNSDGRLRGTLQFL 311 + + VL+S + + R R L + ++ DGR+ + + Sbjct: 1018 KVFSEAVLASLHAHGVKPAGLLLQRQLLDRHTSTFLQPSTGGRLAILHRDGRVHQHI-DM 1076 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 A+ T R QN+P+ +S VR ++ Sbjct: 1077 TATTTSRTVSAYPSCQNIPKDDKS---------------------------SVRRLFVSR 1109 Query: 372 EGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 G K V D + +E VLA + + K +G D +V A + + Sbjct: 1110 FGSKGRCVEVDYSQLEIVVLAILCNDANLTKDLNSGVDFHVKRAAFFSGLPYDE------ 1163 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 YQG + K + +F R Sbjct: 1164 ----------IYQGYKRNVPKYVK------------------LRKTAKQFSFQRLYGAGV 1195 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 P E + +++ +++ + + G Sbjct: 1196 PLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNNPGLPTSFI-------- 1247 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 +P+G + + + +Q + Sbjct: 1248 ----------AEMPTGLRMSL---------------RTRDVVLNLPPIKNYPIQGYGAE- 1281 Query: 610 LAEGMM----------NATKAGYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSNPSWA 658 LA+ M+ + K ++ VHD + + + ++ S + Sbjct: 1282 LAQMMLGRLYRHFVRKDFYKDRAFLINFVHDSVWMDCHVDVLRECVTDTCRILGSVHEYV 1341 Query: 659 KGL 661 + Sbjct: 1342 PKV 1344 >gi|253698875|ref|YP_003020064.1| 3'-5' exonuclease [Geobacter sp. M21] gi|251773725|gb|ACT16306.1| 3'-5' exonuclease [Geobacter sp. M21] Length = 377 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 62/193 (32%), Gaps = 35/193 (18%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L D E S + Y E V L + +VL Sbjct: 34 VLAFDLEADS--------LHHYTE--KVCLIQVSSASEDRLIDPLAPID--VKVLAPIFA 81 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG-EALKLSS 120 N + + H + ++ L F +++ T++ ++ G L A+ + + Sbjct: 82 NPAIKKIFHGADYDMRSLYRDFGIEV--VNLFDTMIASQFLGESEFGLAALLKKRFGVEL 139 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 K + + R P +E +Y D ++ E++++LE Sbjct: 140 DKRYQKADWSKR---------------PFSQE----MLDYAMKDTSLLIELYRQLEAELK 180 Query: 181 KEQELWYLDQTIN 193 ++ L ++++ Sbjct: 181 QKGRLAWVEEESE 193 >gi|148251746|ref|YP_001236331.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp. BTAi1] gi|146403919|gb|ABQ32425.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp. BTAi1] Length = 204 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 50/179 (27%), Gaps = 33/179 (18%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ LK L N Sbjct: 20 VAIDTET--------MGLNPHRD--RLCVVQLSPGDGSADVVQIPKGHTDAPNLKALLAN 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 +T + H + F+ L F + CT + +R LK + L Sbjct: 70 PAITKIFHFARFDVATLFHTFG--VMPQPVYCTKIASRLARTYTDRHGLKDLVREL---- 123 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 L K + N Y DV + ++L+ + Sbjct: 124 --------LNVDLSKQQQSSDWGADNLS------EPQLAYAASDVLHLHALREKLDVML 168 >gi|254487503|ref|ZP_05100708.1| ribonuclease D [Roseobacter sp. GAI101] gi|214044372|gb|EEB85010.1| ribonuclease D [Roseobacter sp. GAI101] Length = 204 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 50/186 (26%), Gaps = 33/186 (17%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 + ID ET G+ + + + + D L L LE Sbjct: 19 IVAIDCET--------MGLHPHRD--RLCVVQLSGGDGHAHLVQIGKGQTEAPNLCALLE 68 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119 + +V + H F+ ++ F CT + +R L + + L Sbjct: 69 DPEVLKLFHFGRFDIAAMQNAFG--AKTAPVYCTKIASRLVRTFTDRHGLAKLCQEL--- 123 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 L K + + Y DV ++ +L + Sbjct: 124 ---------LGTDISKQQQSSDWGAAQLTQAQID------YAASDVLYLHQLRDKLNAML 168 Query: 180 SKEQEL 185 +E + Sbjct: 169 IREDRM 174 >gi|47934628|gb|AAT39752.1| DNA polymerase [Uncultured T7-like podovirus] Length = 190 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 26/168 (15%) Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + + +++ L G+ + TE V R + V Sbjct: 49 IFNPGSRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKRVA 107 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 ++++ ++A+ DGR+ G + GA TGR + +P S Sbjct: 108 QIDSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP-------------- 152 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 RSC EG LV D +G+E R+LA + Sbjct: 153 ----------FGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMETKT 190 >gi|16331359|ref|NP_442087.1| ribonuclease D [Synechocystis sp. PCC 6803] gi|1001530|dbj|BAA10157.1| ribonuclease D [Synechocystis sp. PCC 6803] Length = 217 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 57/198 (28%), Gaps = 28/198 (14%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 + +D ET G+ + + + L + V L + Sbjct: 29 KEVAVDTET--------MGLNPHRD--RLCLVQICDPEGNVTALRIAKGQEEAPNLTRLM 78 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 E+ +T + H + F+ LK F DI + CT + ++ ++ + Sbjct: 79 EDPGITKIFHFARFDTAQLKHTF--DIKTYPIFCTKIASKIARTYTSHHGL--------- 127 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 K L+ E + + N + Y DV + +LE + Sbjct: 128 -----KTLVQELVGVELDKSSQCSDWGNAANLSKAQLAYAANDVRYLIPLRHKLEKML-- 180 Query: 182 EQELWYLDQTINDRGYCV 199 +E V Sbjct: 181 AREDRLRLAQRCFECLPV 198 >gi|197116637|ref|YP_002137064.1| ribonuclease D [Geobacter bemidjiensis Bem] gi|197085997|gb|ACH37268.1| ribonuclease D, putative [Geobacter bemidjiensis Bem] Length = 377 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 62/193 (32%), Gaps = 35/193 (18%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 L D E S + Y E V L + +VL Sbjct: 34 VLAFDLEADS--------LHHYTE--KVCLIQVSSTSEDRLIDPLAPID--VKVLAPIFA 81 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG-EALKLSS 120 N + + H + ++ L F +++ T++ ++ G L A+ + + Sbjct: 82 NPAIKKIFHGADYDMRSLYRDFGIEV--VNLFDTMIASQFLGESEFGLAALLKKRFGVEL 139 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 K + + R P +E +Y D ++ E++++LE Sbjct: 140 DKRYQKADWSKR---------------PFSQE----MLDYAMKDTSLLIELYRQLEAELK 180 Query: 181 KEQELWYLDQTIN 193 ++ L ++++ Sbjct: 181 QKGRLAWVEEESE 193 >gi|38707863|ref|NP_944958.1| Putative DNA polymerase [Enterobacteria phage Felix 01] gi|33340466|gb|AAQ14817.1| putative DNA polymerase [Enterobacteria phage Felix 01] Length = 906 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 58/444 (13%), Positives = 115/444 (25%), Gaps = 67/444 (15%) Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + ++K L LTE++ + + + + + R S Sbjct: 480 QYIEHNWSVKKYTDLLEPCLIRTSPKLTESSYDTIEGELGQKIAKYYTLMHRRRTIENSK 539 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + + + DGRL GA G +G + Sbjct: 540 DDE-KGWLNQIRPDGRLS-----AGAMVFGTSTGRMTQ---------------------- 571 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA------ 401 I + P + + +R+ I EG ++ D + +L G++ KA Sbjct: 572 YGIVNVPSGAAVYGEPMRAVWICEEGTDIISVDQNSAQLVLLCNFMGDEDFTKAVTEGKE 631 Query: 402 -------------FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 + + + + L Y Sbjct: 632 SVEFTKQDDGRYYCKHLDKYLNPETDKYLRYDAENDLYEVYTGTDAHTLNSIY----FGL 687 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV-K 507 K L+ + + + + A T + K Sbjct: 688 NKEEDIVRCRETQDEELLHEITKGRKKAKNGIYALLFGAGDEKFAKTIKASSTEEGALTK 747 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + + ++ +L + L + F+ T + + + + Y+K L P Sbjct: 748 QTYFVRLPKIKKLLDRLEEDFKATKKALEEVFGKTSAIAKGGYIKVAGAWLWCKSPHKL- 806 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 L Y +G+ N RE T N G V + Sbjct: 807 LNYTLMGSEAQVQNEGINLANRELTERKLTVLNG--------------RKPAIGARWVCS 852 Query: 628 VHDEIVCETPDTDEFNASMLYHLM 651 HDE+ E P D + + M Sbjct: 853 YHDEVSLEVPTKDVPDVKEIIDRM 876 >gi|319781433|ref|YP_004140909.1| 3'-5' exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167321|gb|ADV10859.1| 3'-5' exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 206 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 56/204 (27%), Gaps = 35/204 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ L L N Sbjct: 22 VAIDTET--------LGLNPHRD--RLCVVQISPGDGSADVIQIAPGQKKAPNLVSLLRN 71 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLS 119 VT + H F+ VL F + CT + +R LK + E L + Sbjct: 72 RGVTKLFHYGRFDLAVLYNAFG--VMPEPVFCTKIASRLTRTYTDRHGLKDICFELLGVG 129 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++ + A E EY DV + L Sbjct: 130 LSKAQQSSDWAAETLSPEQ-------------------LEYAASDVLYLHRLRDVLAGRL 170 Query: 180 SKEQELWYLDQTINDRGYCVDVAL 203 +++ D + L Sbjct: 171 ARDGRTKEADACFRFLPTRAKLDL 194 >gi|298491354|ref|YP_003721531.1| 3'-5' exonuclease ['Nostoc azollae' 0708] gi|298233272|gb|ADI64408.1| 3'-5' exonuclease ['Nostoc azollae' 0708] Length = 209 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 61/202 (30%), Gaps = 26/202 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + +D ET G+ + + L V LK+ LE Sbjct: 27 IAVDTET--------MGLLPQRD--RLCLVQLCNSQGKVTAICIAKGQTEAPNLKQLLEA 76 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 T + V H + F+ L+ NL+I + CT + ++ + L + Sbjct: 77 THILKVFHFARFDVATLRH--NLEIQVQPVFCTKIASKLARTYTNLHGL----------- 123 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 K+++ + E + + N Y DV + ++L + +E Sbjct: 124 ---KDVVQELEQVELDKSAQSSDWGNAVNLSETQLSYAANDVRYLLNVQQKLTQMLEREG 180 Query: 184 ELWYLDQTINDRGYCVDVALAH 205 Q V + L Sbjct: 181 RWELAQQCFQVLPTLVSLDLLQ 202 >gi|33340353|gb|AAQ14704.1|AF320576_163 putative DNA polymerase [Enterobacteria phage Felix 01] Length = 909 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 58/444 (13%), Positives = 115/444 (25%), Gaps = 67/444 (15%) Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + ++K L LTE++ + + + + + R S Sbjct: 483 QYIEHNWSVKKYTDLLEPCLIRTSPKLTESSYDTIEGELGQKIAKYYTLMHRRRTIENSK 542 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + + + DGRL GA G +G + Sbjct: 543 DDE-KGWLNQIRPDGRLS-----AGAMVFGTSTGRMTQ---------------------- 574 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA------ 401 I + P + + +R+ I EG ++ D + +L G++ KA Sbjct: 575 YGIVNVPSGAAVYGEPMRAVWICEEGTDIISVDQNSAQLVLLCNFMGDEDFTKAVTEGKE 634 Query: 402 -------------FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 + + + + L Y Sbjct: 635 SVEFTKQDDGRYYCKHLDKYLNPETDKYLRYDAENDLYEVYTGTDAHTLNSIY----FGL 690 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV-K 507 K L+ + + + + A T + K Sbjct: 691 NKEEDIVRCRETQDEELLHEITKGRKKAKNGIYALLFGAGDEKFAKTIKASSTEEGALTK 750 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + + ++ +L + L + F+ T + + + + Y+K L P Sbjct: 751 QTYFVRLPKIKKLLDRLEEDFKATKKALEEVFGKTSAIAKGGYIKVAGAWLWCKSPHKL- 809 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 L Y +G+ N RE T N G V + Sbjct: 810 LNYTLMGSEAQVQNEGINLANRELTERKLTVLNG--------------RKPAIGARWVCS 855 Query: 628 VHDEIVCETPDTDEFNASMLYHLM 651 HDE+ E P D + + M Sbjct: 856 YHDEVSLEVPTKDVPDVKEIIDRM 879 >gi|27375830|ref|NP_767359.1| hypothetical protein blr0719 [Bradyrhizobium japonicum USDA 110] gi|27348968|dbj|BAC45984.1| blr0719 [Bradyrhizobium japonicum USDA 110] Length = 204 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 54/180 (30%), Gaps = 35/180 (19%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ LK L N Sbjct: 20 VAIDTET--------MGLNPHRD--RLCVVQLSPGDGSADVVQIPKGHTDAPNLKALLAN 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLS 119 +T + H + F+ VL + + CT + +R LK + E L + Sbjct: 70 PAITKIFHFARFDVAVL--YQSFGVMTGPIYCTKIASRLTRTYTDRHGLKDLVREVLNVD 127 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K ++ + + Y DV + +RL+ + Sbjct: 128 LSKQQQSSDWGS-------------------DSLTEPQLAYAASDVLHLHALRERLDAML 168 >gi|57239514|ref|YP_180650.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden] gi|58579496|ref|YP_197708.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden] gi|58617549|ref|YP_196748.1| putative ribonuclease D [Ehrlichia ruminantium str. Gardel] gi|57161593|emb|CAH58521.1| putative exonuclease [Ehrlichia ruminantium str. Welgevonden] gi|58417161|emb|CAI28274.1| Probable ribonuclease D [Ehrlichia ruminantium str. Gardel] gi|58418122|emb|CAI27326.1| Probable ribonuclease D [Ehrlichia ruminantium str. Welgevonden] Length = 205 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 29/207 (14%), Positives = 60/207 (28%), Gaps = 35/207 (16%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 T+ +D ET + + L + V L LK+ L Sbjct: 18 NTVAVDTET----------MGLVCRRDRLCLVQMSGSNGNVHLVKFPSTEYQASNLKKIL 67 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALK 117 + +T + H + F+ T ++ + CT + ++ LK + E L Sbjct: 68 SDLSITKIFHFARFDITAIRYYLGIW--AIPCYCTKIASKLARTYTDHHGLKELCNELLG 125 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + K+++ + E Y DV + +L+ Sbjct: 126 IKLNKVQQSSDWGKEVLTSEQLN-------------------YAASDVIHLHALKSKLDA 166 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALA 204 + +E + + V + L Sbjct: 167 MLERENKQELAKSCFDFLPTRVQLDLL 193 >gi|190889732|ref|YP_001976274.1| ribonuclease III protein [Rhizobium etli CIAT 652] gi|190695011|gb|ACE89096.1| ribonuclease III protein [Rhizobium etli CIAT 652] Length = 208 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 48/208 (23%), Gaps = 27/208 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET + + + D ++ L LE+ Sbjct: 24 VAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLVALLED 73 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 + H F+ VL F + CT + +R L K Sbjct: 74 PTHQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRL---SRTYTD---RHGL---KD 122 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 + L K + + EY DV + +L ++ Sbjct: 123 NLKEMLDVDISKTQQSSDWGAETLSPAQ------LEYAASDVLYLHALRDKLTARLIRDG 176 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIV 211 + + L + Sbjct: 177 RFDHATACFAFLPTRAKLDLLGWEEADI 204 >gi|194473823|ref|YP_002048647.1| DNA polymerase [Morganella phage MmP1] gi|194307044|gb|ACF42026.1| DNA polymerase [Morganella phage MmP1] Length = 703 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 87/765 (11%), Positives = 177/765 (23%), Gaps = 168/765 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL---KEALEN 63 D ET G+ K + + + D ++ P L + LE Sbjct: 5 DIETD--------GLLKQTKRFHC-GVTYDY--------DTDYEKFTPDELSGYLDLLEE 47 Query: 64 ---TDVTIVAHNS-YFERTVLKA------CFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 D IV HN F+ L + ++P + TLV++R + LK Sbjct: 48 VVAKDGLIVFHNGTKFDTKALTKLAKLQLNRDFELPKRNCLDTLVISRLL--HANLKNTD 105 Query: 114 EAL---KLSSQKMEEGKELIARFCKGETHECLYDRNK----------PNHREAW----RL 156 L + K L A + + Y + + + W + Sbjct: 106 APLLRKGILPGKRYGSHALEAWGYRLGVLKGEYKDDYKREVEAQGEEYHEGDEWLYFNQA 165 Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKE------------------------------QELW 186 +Y DV VT+ + ++ S + Sbjct: 166 MLDYNVQDVVVTKALLEKFLQDSWYFPVNEGEDWTVYTTMTATEFWSRVNYSVTLEHDAA 225 Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 +L + G+ D R KL +L +W + Sbjct: 226 WLLAKMELNGFPFDTESIEGHYAKWSALREKLLAKLVDTFG-------------SWYRPK 272 Query: 247 TGLHL---EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS-AVL---KLNTLVEAMN 299 G + + L P+A V + S++ V N Sbjct: 273 GGNTPFRHPKTGKPMKKYPLVK----YPKAGSVLTKAGKPSKTPYVKDCPYTPVEYVTFN 328 Query: 300 SDGRLRGTLQFLGA-------SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 R L+ A + TG+ +++ + +I Sbjct: 329 PSSRDHIQLKLQEAGWVPTEFTPTGQPVVDDTVLEHVKVDDPEKQASIDLIKDYLLIQKR 388 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 + +R + +G+ + G ++ + Sbjct: 389 IGQAAEGDKAWLR--YVEEDGRMHGSVNPNGAVTGRATHSFPNVAQVPSVRAPYGEECRK 446 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM-----ASTTGLNLNTFAHLVK 467 + + TKD + L + A + A + Sbjct: 447 AFGAEHNRKPDGTKDPWVQAGIDASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQNA 506 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + + + +K + + ++ L + Q Sbjct: 507 AELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKAKFLENTPAIAALRESIEQT 566 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 ++ + R K + GR + R Sbjct: 567 LVKSSKW-------VRNADGTSEQKVSWKRRWVKGLDGRKVHVRSPHA------------ 607 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL----------------TVHDE 631 ++Q+ I + ++ + ++L VHDE Sbjct: 608 ---------ALNTLLQSAGALICKQWIVTTEE----MLLAKGLKHGWDGDFAYMAWVHDE 654 Query: 632 IVCETPDTDEFN--ASMLYHLMTSNPS-WAKGLPLKAEGYESKRY 673 I + M + L EG + Sbjct: 655 IQVACRNEAIAKIVVETAQEAMRKVGEMFNFRCQLDTEGKIGANW 699 >gi|307151178|ref|YP_003886562.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822] gi|306981406|gb|ADN13287.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822] Length = 209 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 27/205 (13%), Positives = 54/205 (26%), Gaps = 34/205 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + +D ET G+ + + + L V LK+ +EN Sbjct: 27 IAVDTET--------MGLIPHRD--RLCLVQLCDPTGYVTAIRIAKGQKEAPKLKQLMEN 76 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119 V H + F+ L+ ++ CT + ++ LK++ L + Sbjct: 77 NHSIKVFHFARFDVAQLRHHLGIE--TTPIFCTKIASKLARTYTSSHGLKSLVLELEGIE 134 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K + + Y DV + ++L + Sbjct: 135 LDKTAQSSDWGN------------------AANLSEEQLSYAANDVRYLLGLKQKLITML 176 Query: 180 SKEQELWYLDQTINDRGYCVDVALA 204 +E V + L Sbjct: 177 QREDRWQLAQDCFQCLPVIVSLDLL 201 >gi|15604287|ref|NP_220803.1| hypothetical protein RP422 [Rickettsia prowazekii str. Madrid E] gi|3860979|emb|CAA14879.1| unknown [Rickettsia prowazekii] gi|292572036|gb|ADE29951.1| Ribonuclease D [Rickettsia prowazekii Rp22] Length = 203 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 60/203 (29%), Gaps = 33/203 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + +D ET G+ + + + L F + L ++ LK L + Sbjct: 20 IAVDTET--------MGLNIHRD--KLCLLQFSNGNGEAHLVHFINQDYTAPNLKMLLLD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 + H + F+ +K ++D+ CT + ++ LK + L Sbjct: 70 KTRCKIFHFARFDLASIKKYLSIDLE--NIFCTKISSKLVRTYTDSHGLKDLCREL---- 123 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 L K + + + EY DV ++ L+ + Sbjct: 124 --------LNINISKQQQSSYWGTDHLSLEQ------KEYAAKDVLYLHQLKDILQKMLL 169 Query: 181 KEQELWYLDQTINDRGYCVDVAL 203 +E L V + L Sbjct: 170 RENRLELAHDIFRFLPTRVHLDL 192 >gi|153007480|ref|YP_001368695.1| 3'-5' exonuclease [Ochrobactrum anthropi ATCC 49188] gi|151559368|gb|ABS12866.1| 3'-5' exonuclease [Ochrobactrum anthropi ATCC 49188] Length = 205 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 48/181 (26%), Gaps = 35/181 (19%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ L + L++ Sbjct: 21 VAIDTET--------LGLNPHRD--RLCVVQISPGDGTADVIQIEAGQKKAPNLVKLLKD 70 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 +T + H F+ VL F CT + ++ LK + L Sbjct: 71 RSITKIFHFGRFDLAVLAQAFG--TMPQPVFCTKIASKLTRTYTDRHGLKELCNELL--- 125 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF-GEYCKGDVTVTREIFKRLEPLS 179 + ++ E EY DV + LE Sbjct: 126 ----------------DVSISKQQQSSDWAAETLSAAQLEYAASDVLYLHRLKAVLEQRL 169 Query: 180 S 180 Sbjct: 170 E 170 >gi|218442029|ref|YP_002380358.1| cell divisionFtsK/SpoIIIE [Cyanothece sp. PCC 7424] gi|218174757|gb|ACK73490.1| cell divisionFtsK/SpoIIIE [Cyanothece sp. PCC 7424] Length = 648 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 59/388 (15%), Positives = 113/388 (29%), Gaps = 69/388 (17%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF-----GFDDHPVELWDCVHDPVMPQV 56 TL++D E Y + + L +++ V + D + P + Q Sbjct: 21 KTLWLDTE----------IADWYTPNPRLSLIQILTNPKNIEENNVYVLDVLDKPDLIQD 70 Query: 57 LK-EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 + ++N + V HN+ F+ + CTL +A+ G + Sbjct: 71 FINQIMKNPQIEKVFHNASFDI----KYLGGKEEVKNVTCTLKIAKKIGKH--------S 118 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L + + K+ K L C E + L Y K DV + L Sbjct: 119 LNVPNLKL---KTLAEYLCNLPIVEDQQASDWGKRPL-TELQLNYAKMDVVYLANVHHYL 174 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK--LDQELESLTYGLVSSS 233 L+S + + + + L + L+ + L + + Sbjct: 175 LTLNSDKTPPIFTPEVGE------NQELFNHLSAKFIEYLIQDPQIPTLFESSPDQLQLE 228 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 +L+ L+ + QA Q+ S + Sbjct: 229 TIASQLQKILYQSIFFPY----------LQEKITTEPHQAPQLQKTWQSLSHL-IKYWTE 277 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L+ A R + S + N P PS E++ Q + + + Sbjct: 278 LLIA----NRYHYS-----------PSELLPKTLNSP-PSPIDEKIGQNLVSILNAFGIK 321 Query: 354 PDPLQIISDC--VRSCVIASEGKKLVVA 379 D + I+ +R + G K+V Sbjct: 322 VDYVGAIAAPAFIRVKLKPYPGVKVVSI 349 >gi|254261387|ref|ZP_04952441.1| 38L [Burkholderia pseudomallei 1710a] gi|254220076|gb|EET09460.1| 38L [Burkholderia pseudomallei 1710a] Length = 800 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 47/442 (10%), Positives = 116/442 (26%), Gaps = 103/442 (23%) Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL----------NTLVEAMNSDGRLRG 306 + V+ + ++ N + + ++ + DG + Sbjct: 382 SVSSDVIEALGNRDIPFLKTLANVAKLGKDLGTYYVTTDEKTGVQKGMLTLVGDDGIIHQ 441 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 + ++ T R+S QN+ V+S Sbjct: 442 KIN-HTSTVTARFSEQDPNLQNV---------------------------SGAGKSQVKS 473 Query: 367 CVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 ++ ++V +D +E + A ++G + ++ G D++ ++ + Sbjct: 474 VFVSRWLADGQVVQSDFTSLEIFIQAILSGCKQLIEDLRAGLDMHCVRVSQKEGITYED- 532 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 + G + + + + +F R Sbjct: 533 -------------------------AVLKCKG-DPSRGVAPLPEWEKKRKGAKEFSFQRA 566 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 A + + + KA ++ +S A + I + RR Sbjct: 567 YGAGAAGIAASTGMLLEDVQALIKAEEARYPELSAY-----NAAKT------ERIKKSRR 615 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK------LT 598 + D L+ L G SY + + + + + Sbjct: 616 PTNNIQPHPDVKGLMCQLGKG--YSITPDNKVYSYRESPAPKWLVQQGGMPQSFSPTEIA 673 Query: 599 ENIVQAVSRDILAEGM-MNATKAGYD--------IVLTVHDEIVCETPDTDE-FNASMLY 648 VQ + M + +V VHD + + + ++++L+ Sbjct: 674 NYEVQGTGGEWAKAAMWLAIRAFYARKNFNGLALLVNQVHDALYKDAHKSVLFESSALLH 733 Query: 649 HLMTSN---PSWAKG----LPL 663 M + W G +P+ Sbjct: 734 ACMLAASDFIEWYFGWKIPVPV 755 Score = 45.5 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 67/244 (27%), Gaps = 35/244 (14%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE-RTVLKACF 84 E+ V+ + V P + L +V N F+ L+ Sbjct: 11 ENFVVVS-GWKRKGGDVMADYFGRGPRPFDWFTKLL-KETTLLVGVNIKFDLLHALREPQ 68 Query: 85 NLD------IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138 NLD + ++ L + + G + K + Sbjct: 69 NLDAWMEFVARGGNVWDCQLAEYLL---RGMEPTSHMLSMDEMVVSYGGNV-----KIDE 120 Query: 139 HECLYDRNKPNHREAWRLFGEYCK------GDVTVTREIF--KRLEPLSSKEQELWYLDQ 190 + L++ L Y GD+ T +IF + + S + + L+ Sbjct: 121 VKALWEAGVDTPDIDKDLILRYLCGDESGLGDIGNTEKIFLGQLAKARKSGQVKSILLNM 180 Query: 191 -------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL---VSSSRCLEKLK 240 + G VD AL L ++ T + EL + + L Sbjct: 181 GSLLCTVEMERNGMYVDKALGLRLAAELEERLTAITAELRAYLPDDCPFDFNWSNRYHLS 240 Query: 241 TWLF 244 +F Sbjct: 241 PLIF 244 >gi|282899306|ref|ZP_06307275.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505] gi|281195763|gb|EFA70691.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505] Length = 209 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 62/202 (30%), Gaps = 26/202 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L +D ET G+ + + L + V L++ LE+ Sbjct: 27 LAVDTET--------MGLLPQRD--RLCLVQLCNPEGKVTAVRIAKGQTHAPNLQQLLES 76 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 TDV V H + F+ L+ + + CT + ++ + + Sbjct: 77 TDVVKVFHFARFDLATLRHNLKIHVQP--VFCTKIASKLARTYTNRHGL----------- 123 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 KEL+ + E + + N Y DV + ++L + +E+ Sbjct: 124 ---KELVQELEQVELDKSSQSSDWGNPVSLSDAQLSYAANDVRYLLSLKQKLSQMLQREE 180 Query: 184 ELWYLDQTINDRGYCVDVALAH 205 + + V + L Sbjct: 181 RWQLAQECFSFLPTLVSLDLLQ 202 >gi|154250652|ref|YP_001411476.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1] gi|154154602|gb|ABS61819.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1] Length = 203 Score = 72.5 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 40/130 (30%), Gaps = 16/130 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + +D ET G+ + + + D + L+ + + Sbjct: 20 VAVDTET--------MGLHPERD--QLCVVQLSAGDGNAHIVQLDRGTYNAPRLRALMAD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119 + + H + F+ +L+ + CT + ++ LK + L + Sbjct: 70 PAILKIFHFARFDVAMLQRYLGVVTAP--VYCTKIASKLVRTYTDRHGLKDLARELVNID 127 Query: 120 SQKMEEGKEL 129 K ++ + Sbjct: 128 MSKQQQSSDW 137 >gi|86605802|ref|YP_474565.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab] gi|86554344|gb|ABC99302.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab] Length = 210 Score = 72.5 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 26/201 (12%), Positives = 58/201 (28%), Gaps = 26/201 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L +D ET I + + + V L L L + Sbjct: 27 LAVDTETMGLIP----------QRDRLCVVQIANAAGEVVLLRLSRGVKQAPHLARLLTD 76 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 ++ + H + F+ +L+ + CT + ++ + Sbjct: 77 PNIEKIFHYARFDLAMLRYHLGI--QAWPVFCTKIASK----------LARTY----TSK 120 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 K+++ C E ++ + N + EY DV + +L + +E+ Sbjct: 121 HSLKDVVGELCGVELNKTAQSSDWGNVQALSPEQLEYAANDVRYLIPVRHKLAQMLQREE 180 Query: 184 ELWYLDQTINDRGYCVDVALA 204 + V++ L Sbjct: 181 RWELAQRCFQHLPTLVELDLL 201 >gi|76810071|ref|YP_333053.1| hypothetical protein BURPS1710b_1649 [Burkholderia pseudomallei 1710b] gi|76579524|gb|ABA48999.1| 38L [Burkholderia pseudomallei 1710b] Length = 774 Score = 72.5 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 47/442 (10%), Positives = 116/442 (26%), Gaps = 103/442 (23%) Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL----------NTLVEAMNSDGRLRG 306 + V+ + ++ N + + ++ + DG + Sbjct: 356 SVSSDVIEALGNRDIPFLKTLANVAKLGKDLGTYYVTTDEKTGVQKGMLTLVGDDGIIHQ 415 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 + ++ T R+S QN+ V+S Sbjct: 416 KIN-HTSTVTARFSEQDPNLQNV---------------------------SGAGKSQVKS 447 Query: 367 CVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 ++ ++V +D +E + A ++G + ++ G D++ ++ + Sbjct: 448 VFVSRWLADGQVVQSDFTSLEIFIQAILSGCKQLIEDLRAGLDMHCVRVSQKEGITYED- 506 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 + G + + + + +F R Sbjct: 507 -------------------------AVLKCKG-DPSRGVAPLPEWEKKRKGAKEFSFQRA 540 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 A + + + KA ++ +S A + I + RR Sbjct: 541 YGAGAAGIAASTGMLLEDVQALIKAEEARYPELSAY-----NAAKT------ERIKKSRR 589 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK------LT 598 + D L+ L G SY + + + + + Sbjct: 590 PTNNIQPHPDVKGLMCQLGKG--YSITPDNKVYSYRESPAPKWLVQQGGMPQSFSPTEIA 647 Query: 599 ENIVQAVSRDILAEGM-MNATKAGYD--------IVLTVHDEIVCETPDTDE-FNASMLY 648 VQ + M + +V VHD + + + ++++L+ Sbjct: 648 NYEVQGTGGEWAKAAMWLAIRAFYARKNFNGLALLVNQVHDALYKDAHKSVLFESSALLH 707 Query: 649 HLMTSN---PSWAKG----LPL 663 M + W G +P+ Sbjct: 708 ACMLAASDFIEWYFGWKIPVPV 729 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 59/209 (28%), Gaps = 33/209 (15%) Query: 61 LENTDVTIVAHNSYFE-RTVLKACFNLD------IPIHRWICTLVLARSNGLPSALKAVG 113 L +V N F+ L+ NLD + ++ Sbjct: 18 LLKETTLLVGVNIKFDLLHALREPQNLDAWMEFVARGGNVWDCQLAEYLL---RGMEPTS 74 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK------GDVTV 167 L + + G + K + + L++ L Y GD+ Sbjct: 75 HMLSMDEMVVSYGGNV-----KIDEVKALWEAGVDTPDIDKDLILRYLCGDESGLGDIGN 129 Query: 168 TREIF--KRLEPLSSKEQELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKL 218 T +IF + + S + + L+ + G VD AL L ++ T + Sbjct: 130 TEKIFLGQLAKARKSGQVKSILLNMGSLLCTVEMERNGMYVDKALGLRLAAELEERLTAI 189 Query: 219 DQELESLTYGL---VSSSRCLEKLKTWLF 244 EL + + L +F Sbjct: 190 TAELRAYLPDDCPFDFNWSNRYHLSPLIF 218 >gi|73667429|ref|YP_303445.1| 3'-5' exonuclease [Ehrlichia canis str. Jake] gi|72394570|gb|AAZ68847.1| 3'-5' exonuclease [Ehrlichia canis str. Jake] Length = 216 Score = 72.5 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 28/205 (13%), Positives = 56/205 (27%), Gaps = 36/205 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET + + L V L + P L L + Sbjct: 32 VAIDTET----------MGLVCRRDRLCLVQLADSSGNVHLVKFSGNYQAP-NLVSVLSD 80 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLS 119 ++ + H + F+ V++ + CT + ++ LK + E L + Sbjct: 81 PNIIKIFHFARFDIAVMRYYLGMWANP--CYCTKIASKLVRTYTDHHGLKELCYELLGVK 138 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 KM++ + E Y DV + +L+ + Sbjct: 139 LNKMQQSSDWGRESLTSEQLN-------------------YAASDVIYLHALKSKLDAML 179 Query: 180 SKEQELWYLDQTINDRGYCVDVALA 204 +E + + L Sbjct: 180 QRENKRELAAACFKFLQTRAQLDLL 204 >gi|322497434|emb|CBZ32508.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 1430 Score = 72.5 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 47/422 (11%), Positives = 103/422 (24%), Gaps = 111/422 (26%) Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN----TLVEAMNSDGRLRGTLQFL 311 + + VL+S + + R R L + ++ DGR+ + + Sbjct: 1019 KVFSETVLASLHAHGVKPAGLLLQRQLLDRHTSTFLQPSTGGRLAILHRDGRVHQHI-DM 1077 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 A+ T R QN+P+ +S VR ++ Sbjct: 1078 TATTTSRTVSAYPSCQNIPKDDKS---------------------------SVRRLFVSR 1110 Query: 372 EGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 G K V D + +E VLA + + K +G D +V A + + Sbjct: 1111 FGSKGRCVEVDYSQLEIVVLAILCNDANLTKDLNSGVDFHVKRAAFFSGLPYDE------ 1164 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 YQG + K + +F R Sbjct: 1165 ----------IYQGYKRNVPKYVK------------------LRKTAKQFSFQRLYGAGV 1196 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 P E + +++ +++ + + G Sbjct: 1197 PLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNNPGLPTSFI-------- 1248 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 +P+G + + + +Q ++ Sbjct: 1249 ----------AEMPTGLRMSL---------------RTRDVVLNLPPIKNYPIQGYGAEL 1283 Query: 610 LAEGMMNATKA---------GYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSNPSWAK 659 + + ++ VHD + + + ++ S + Sbjct: 1284 AQMMLGRLYRHFVRRDFYEDRAFLINFVHDSVWMDCHVDVLRECVTDTCRILGSVHEYVP 1343 Query: 660 GL 661 + Sbjct: 1344 KV 1345 >gi|146080581|ref|XP_001464035.1| mitochondrial DNA polymerase I protein B [Leishmania infantum JPCM5] gi|134068125|emb|CAM66410.1| putative mitochondrial DNA polymerase I protein B [Leishmania infantum JPCM5] Length = 1430 Score = 72.5 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 47/422 (11%), Positives = 103/422 (24%), Gaps = 111/422 (26%) Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN----TLVEAMNSDGRLRGTLQFL 311 + + VL+S + + R R L + ++ DGR+ + + Sbjct: 1019 KVFSETVLASLHAHGVKPAGLLLQRQLLDRHTSTFLQPSTGGRLAILHRDGRVHQHI-DM 1077 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 A+ T R QN+P+ +S VR ++ Sbjct: 1078 TATTTSRTVSAYPSCQNIPKDDKS---------------------------SVRRLFVSR 1110 Query: 372 EGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 G K V D + +E VLA + + K +G D +V A + + Sbjct: 1111 FGSKGRCVEVDYSQLEIVVLAILCNDANLTKDLNSGVDFHVKRAAFFSGLPYDE------ 1164 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 YQG + K + +F R Sbjct: 1165 ----------IYQGYKRNVPKYVK------------------LRKTAKQFSFQRLYGAGV 1196 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 P E + +++ +++ + + G Sbjct: 1197 PLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNNPGLPTSFI-------- 1248 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 +P+G + + + +Q ++ Sbjct: 1249 ----------AEMPTGLRMSL---------------RTRDVVLNLPPIKNYPIQGYGAEL 1283 Query: 610 LAEGMMNATKA---------GYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSNPSWAK 659 + + ++ VHD + + + ++ S + Sbjct: 1284 AQMMLGRLYRHFVRKDFYEDRAFLINFVHDSVWMDCHVDVLRECVTDTCRILGSVHEYVP 1343 Query: 660 GL 661 + Sbjct: 1344 KV 1345 >gi|282897776|ref|ZP_06305775.1| 3'-5' exonuclease [Raphidiopsis brookii D9] gi|281197455|gb|EFA72352.1| 3'-5' exonuclease [Raphidiopsis brookii D9] Length = 209 Score = 72.5 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 61/202 (30%), Gaps = 26/202 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L +D ET + + + L + V L++ LE+ Sbjct: 27 LAVDTETMGLVP----------QRDRLCLVQLCNPEGKVTAVRIAKGQTHAPNLQQLLES 76 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 T V V H + F+ L+ + + CT + ++ + + Sbjct: 77 THVVKVFHFARFDLATLRHNLKIYVQP--VFCTKIASKLARTYTNRHGL----------- 123 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 KEL+ + E + + N Y DV + ++L + +E+ Sbjct: 124 ---KELVQELEQLELDKSSQSSDWGNPVSLSDAQLSYAANDVRYLLSLKQKLSQMLQREE 180 Query: 184 ELWYLDQTINDRGYCVDVALAH 205 + + + V + L Sbjct: 181 RWQLVQECFSFLPTLVSLDLLQ 202 >gi|299133324|ref|ZP_07026519.1| 3'-5' exonuclease [Afipia sp. 1NLS2] gi|298593461|gb|EFI53661.1| 3'-5' exonuclease [Afipia sp. 1NLS2] Length = 204 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 58/208 (27%), Gaps = 35/208 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ LK+ L + Sbjct: 20 VAIDTET--------LGLNPHRD--RLCVVQLSNGDGSADVVQIPAGHTDAPNLKKLLGD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 +T + H + F+ VL F + CT + ++ LK + + Sbjct: 70 PAITKLFHFARFDIAVLYHAFGVMAQP--VYCTKIASKLVRTYTDRHGLKDLVREM---- 123 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 L K + + + Y DV + +L+ + + Sbjct: 124 --------LGVEISKQQQSSDWGAASLSEAQ------LSYAASDVLHLHALRDKLDAMLA 169 Query: 181 KEQELWYLDQTIND--RGYCVDVALAHT 206 +E +D+ Sbjct: 170 REDREPLAKACFEFLPTRARLDLQGWEE 197 >gi|239830972|ref|ZP_04679301.1| 3'-5' exonuclease [Ochrobactrum intermedium LMG 3301] gi|239823239|gb|EEQ94807.1| 3'-5' exonuclease [Ochrobactrum intermedium LMG 3301] Length = 205 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 48/181 (26%), Gaps = 35/181 (19%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ L + L++ Sbjct: 21 VAIDTET--------LGLNPHRD--RLCVVQISPGDGTADVIQIEAGQKKAPNLVKLLKD 70 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 +T + H F+ VL F CT + ++ LK + L Sbjct: 71 RSITKIFHFGRFDLAVLAHTFG--TMPQPVFCTKIASKLTRTYTDRHGLKELCNELL--- 125 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF-GEYCKGDVTVTREIFKRLEPLS 179 + ++ E EY DV + LE Sbjct: 126 ----------------DVSISKQQQSSDWAAETLSAAQLEYAASDVLYLHRLKAVLEQRL 169 Query: 180 S 180 Sbjct: 170 E 170 >gi|159046129|ref|YP_001534923.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12] gi|157913889|gb|ABV95322.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12] Length = 203 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 53/200 (26%), Gaps = 35/200 (17%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 + ID ET + A D + + D + L L Sbjct: 19 VVAIDTETMGLVP---------ARD-RLCVVQLSSGDGDAHMVQIAQGQTEAPNLTRMLT 68 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKA-VGEALKL 118 + V + H + F+ L+ F + CT + ++ LKA + E L + Sbjct: 69 DPKVLKLFHYARFDVAALENAFG--VRTAPIYCTKIASKLVRTYTDRHGLKALLSEVLGV 126 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 K ++ + +Y DV + + L+ + Sbjct: 127 DVSKAQQSSDWG-------------------APTLSAAQLDYAASDVLYLHRLKEALDGM 167 Query: 179 SSKEQELWYLDQTINDRGYC 198 ++E Sbjct: 168 LAREGRTELAQACFEFLPTR 187 >gi|113475312|ref|YP_721373.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101] gi|110166360|gb|ABG50900.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101] Length = 207 Score = 72.5 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 54/201 (26%), Gaps = 26/201 (12%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64 +D ET + + L V LK+ +E Sbjct: 26 AVDTETMGLLP----------RRDRLCLVQLCDPLGQVTAIRIHKGQQEAPNLKQLMEAN 75 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 + V H + F+ +L+ + + CT + ++ + Sbjct: 76 SIVKVFHFARFDVAMLQHYLGIKVSP--IFCTKISSK----------LARTY----TGKH 119 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 K+L+ K E + + N Y DV + ++L + +E+ Sbjct: 120 GLKDLVMELEKVELDKSSQSSDWGNAENLTEKQLNYAANDVRYLLSVREKLSKILKREER 179 Query: 185 LWYLDQTINDRGYCVDVALAH 205 Q V + L Sbjct: 180 WELAQQCFECLPVFVGLDLLQ 200 >gi|85714031|ref|ZP_01045020.1| 3'-5' exonuclease [Nitrobacter sp. Nb-311A] gi|85699157|gb|EAQ37025.1| 3'-5' exonuclease [Nitrobacter sp. Nb-311A] Length = 206 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 52/190 (27%), Gaps = 27/190 (14%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64 ID ET G+ + + + + D ++ LK+ L + Sbjct: 23 AIDTET--------MGLKPHRD--RLCVVQMSPGDGSADVIQIARGQHDAPNLKKLLGDP 72 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 + + H + F+ L F + CT + +R L K Sbjct: 73 AIVKIFHFARFDLAALHNAFG--VMPRPVYCTKIASRL---TRTYTD---RHGL---KDL 121 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 + L K + + + A Y DV + +L+ + ++E Sbjct: 122 VREALSIDLSKQQQSSDWGSLALSDAQLA------YAASDVLHLHALRDKLDAMLAREDR 175 Query: 185 LWYLDQTIND 194 Sbjct: 176 TGLAQACFEF 185 >gi|162456960|ref|YP_001619327.1| pseudogene [Sorangium cellulosum 'So ce 56'] gi|161167542|emb|CAN98847.1| pseudogene [Sorangium cellulosum 'So ce 56'] Length = 101 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 6/64 (9%) Query: 614 MMNATKA---GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYE 669 M+ + G +VLTVHDE+ E P A + M S +PL + Sbjct: 1 MVRVPRPVVPGARMVLTVHDELAFEVPAEAVDEAKAKVREAMESVFP--LDVPLVVDVGH 58 Query: 670 SKRY 673 + Sbjct: 59 GPTW 62 >gi|49475064|ref|YP_033105.1| ribonuclease d [Bartonella henselae str. Houston-1] gi|49237869|emb|CAF27065.1| Ribonuclease d [Bartonella henselae str. Houston-1] Length = 206 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 53/206 (25%), Gaps = 31/206 (15%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 + + +D ET G+ + + + + D ++ L Sbjct: 19 IDAVAVDTET--------LGLQPHRD--RLCVVQLSSGDGTADVIQIAKGQKSAPNLVRL 68 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + D+T + H F+ +L F + CT + ++ + Sbjct: 69 LSDRDITKIFHFGRFDLAILAHTFG--VMPDVVFCTKIASKL-----------------T 109 Query: 121 QKMEEGKELIARFCKGETHECLYDRN-KPNHREAWRLF-GEYCKGDVTVTREIFKRLEPL 178 + + L + + E EY DV + E Sbjct: 110 RTYTDRHGLKEICGELLNVNISKQQQSSDWAAETLSRAQIEYAASDVLYLHRLKDIFEER 169 Query: 179 SSKEQELWYLDQTINDRGYCVDVALA 204 +E+ ++ L Sbjct: 170 LKREERESVAKACFQFLPMRANLDLL 195 >gi|257059023|ref|YP_003136911.1| 3'-5' exonuclease [Cyanothece sp. PCC 8802] gi|256589189|gb|ACV00076.1| 3'-5' exonuclease [Cyanothece sp. PCC 8802] Length = 210 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 60/213 (28%), Gaps = 35/213 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + +D ET I + + L V LK+ +E Sbjct: 28 IAVDTETMGLIP----------QRDRLCLVQLCDPSGFVTAIRIERGQKEAPKLKQLMEA 77 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119 + V H + F+ L+ F ++ CT + ++ LK++ + L + Sbjct: 78 KTILKVFHYARFDVAQLRYHFGIETQP--IFCTKIASKLARTYTSSHGLKSLVQELEGIE 135 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K + + N + Y DV ++L + Sbjct: 136 LDKTSQSSDW------------GNSANLSVAQ------LSYAANDVRYLIPAKEKLITML 177 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 +E+ +Q N V + I + Sbjct: 178 QREERWQLAEQCFNCIPVFVSLD-LEQYKDIFE 209 >gi|291301867|ref|YP_003513145.1| DNA-directed DNA polymerase [Stackebrandtia nassauensis DSM 44728] gi|290571087|gb|ADD44052.1| DNA-directed DNA polymerase [Stackebrandtia nassauensis DSM 44728] Length = 548 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 58/462 (12%), Positives = 103/462 (22%), Gaps = 145/462 (31%) Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + +++ F + G +E + + P + SR Sbjct: 215 HPFNPDSPQQVLA-AFRKAGHPIETTRAWELKTI------DHPAVPPLLRY-KELSRVHS 266 Query: 289 LKLNTLVEAMNSDG---------RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + DG R R +G TGRW+ +P+ Sbjct: 267 AHGWNWLSEWVGDGPGGPDSPAKRFRPRY-VVGGVVTGRWATDGGAALQIPK-------- 317 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R+ A G KLVVAD A +E R+LA M+ + + Sbjct: 318 -----------------------VIRAAATADAGHKLVVADAAQLEPRMLAAMSQDPGMI 354 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 A E + + K+ L+ Y G A + + Sbjct: 355 AAAEADDMYAALAPTFDGSRD----------DAKIALLSAMYGGTAGNATALLTVM---- 400 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + A + + + + ++G W Sbjct: 401 ------------RRRFPTAYAYVEQAARDGEKGGLVRTWLGRTSPAPGDGWWN------- 441 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + R L L Sbjct: 442 -----------ALTGPGGTRSARDRGRFTRNFVVQGTAAEWALSMMALLR---------- 480 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 +R R D+V HDEI+ + Sbjct: 481 ----SRLWER------------------------------ELGDLVFFQHDEIIVHCEQS 506 Query: 640 DEFNAS-MLYHLMTSNPSWAKG-----LPLKAEGYESKRYRK 675 + ++ G +PL A Y K Sbjct: 507 RAETVAGLIQECADQATRLLFGRLSMRVPLSAA--IVDSYDK 546 >gi|332671808|ref|YP_004454816.1| DNA-directed DNA polymerase [Cellulomonas fimi ATCC 484] gi|332340846|gb|AEE47429.1| DNA-directed DNA polymerase [Cellulomonas fimi ATCC 484] Length = 567 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 65/479 (13%), Positives = 108/479 (22%), Gaps = 137/479 (28%) Query: 187 YLDQTINDRGYCVDVALAHTLNQIV----------DVERTKLDQELESLTYGLVSSSRCL 236 + Q + G DV + L + L + + Sbjct: 178 LIAQEMRHDGMPWDVTVHDALLTDLLGPRPRGGGRPARLEALVARIREELVQPTLNPDSQ 237 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 L L L G + ++ + + V SR ++ Sbjct: 238 PDLLRGLRLA-GFDVASTSKW-------EIRGIDHPVRDVLLEYKTLSRLLSANGWAWMD 289 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 DGR R G +GRW+ LP R+ D Sbjct: 290 TWIHDGRFRPEY-VPGGVVSGRWATSGGGALQLPAAVRAAVRADD--------------- 333 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 G +LVVAD A +E RVLA M+G+ A + A Sbjct: 334 ----------------GWRLVVADAAQLEPRVLAAMSGDGAMAAAGRQADLYQGVVDAGI 377 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 K L Y +TTG + L Sbjct: 378 VATRSD---------AKYAMLGAIY----------GATTGASAALMPQLT---------- 408 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 + + + L +A + E G+ Sbjct: 409 -----------------------------------RAYPQAVAL----VEAAARAGERGE 429 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 A+ R P + R +G Sbjct: 430 AVTTWLGRSSPTPDAAWQAE-------------LSAASAEGAAAEDVRAVRRRARDWGRF 476 Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH 649 +VQ + + M + + +V +HDE++ +P + Sbjct: 477 TRNFVVQGTAAEWALCWMASLRRRLRDVPGRPHLVFFLHDEVMVHSPAPVAEEVAQAVR 535 >gi|167841478|ref|ZP_02468162.1| 38L [Burkholderia thailandensis MSMB43] Length = 787 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 56/517 (10%), Positives = 129/517 (24%), Gaps = 98/517 (18%) Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 + + + + D L + + K + + + + Sbjct: 279 DAEGNLQYYAKKETHYLLADGSTMECAEYEKRTDDGMPVEPLVK-FAGGKNKGEPKTKQV 337 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLT--------ETTCQRVLSSNKKLTPQAIQVF 277 T +++ + G D +T V+ + + Sbjct: 338 TVPDKER-GPKTRIEDHFYTFEGYTTGDKKWESSEPGVYSTAGDVIEALGNRGIPFLDAM 396 Query: 278 NNRMRASRSAVLK---LN-------TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 ++ + ++ + D + L + TGR S Q Sbjct: 397 ARVQALTKDLGTYFIRYDEKKKAHVGMLTLVQLDSIVHHMLN-HTNTVTGRLSSSNPNLQ 455 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 NL + +S + E ++ +D + +E Sbjct: 456 NLSKGQKSRVKEVFESRW-------------------------GEDGVIIQSDFSSLEVY 490 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 V A + + ++ ++G+D++ A +V + I E Sbjct: 491 VQAILTKAEKLIEDLKSGKDMHCVRLAAKEGKTYEEVF-ELCKIIADPE----------- 538 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 +F R + A E + Sbjct: 539 ---------------------WDYKRTGAKVFSFQRAYGAGNKTIAESTGMPLEEVEALA 577 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 +A +++ V + + + + + E A P P G+ Sbjct: 578 QAEDERYHEVPAYFEKKTEEIKASRE-----PAGIWLIHPANGADVQLGVGHSRTPGGKL 632 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM-MNAT-------- 618 Y++ + R + R + ++ VQ +I GM + Sbjct: 633 YTYKETLAPDFLVK---RGILRNFMPT-EIKNYEVQGEGGEIAKAGMWLTVRAFYTYENF 688 Query: 619 KAGYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSN 654 K +V VHD + A++L+ M+ Sbjct: 689 KMLALLVNQVHDAEYADAHKKVATKAAALLHACMSEA 725 Score = 47.0 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 61/231 (26%), Gaps = 40/231 (17%) Query: 56 VLKEALENTDVTIVAHNSYFERTVL--------------KACFNLDIPIHRWICTLVLAR 101 + LE T + HN F+ VL KA T + Sbjct: 52 WFVDLLEGTKILA-GHNIKFD--VLYALGNPNSNREANRKAWMKWVAEGGLVWDTQLAEY 108 Query: 102 SN----GLPSALKAVGEALKLSSQ-KMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156 L A++ K++E K + + +G + ++ + + Sbjct: 109 LLKGQAQEAHMLDLGTTAIEHGGNAKLDEVKLM---WAQGVDTIDIPRDKLMDYLVGFEV 165 Query: 157 FGEYCKGDVTVTREIFKRLE---------PLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 GE+ GD+ T IF+ G V+ LA L Sbjct: 166 NGEWEHGDIGNTELIFRSQYLIANKRGQLRSIFMNMGALIYTIECELNGMFVNQTLAKEL 225 Query: 208 NQIVDVERTKLDQELESLTYGL---VSSSRCLEKLKTWLF---LETGLHLE 252 + V+ E E+ S + +F ++ Sbjct: 226 AKEVEEELAAKLVEVNSYIPADLPFEFNWNSRFHKSALIFGGNVKYKAPAP 276 >gi|207110463|ref|ZP_03244625.1| DNA polymerase I [Helicobacter pylori HPKX_438_CA4C1] Length = 103 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 27/107 (25%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L+ + D ++ T G + TGR S QN+P S Sbjct: 1 LLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL---------------- 43 Query: 354 PDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R IA S+ L+ D + IE R+LA + ++ + Sbjct: 44 ---------LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLM 81 >gi|148272793|ref|YP_001222354.1| putative DNA polymerase I [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830723|emb|CAN01663.1| putative DNA polymerase I [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 556 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 84/582 (14%), Positives = 138/582 (23%), Gaps = 148/582 (25%) Query: 93 WICTLVLARSNGLP-------SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 W T AR+ L+ L+LS+Q EL +R Sbjct: 52 WDDTAAWARTLIAAGVRVARCHDLRLCHAILRLSTQ--TADSELARLPAGPWDRAAPSER 109 Query: 146 NKPNHREAWRLFGEYCKG---DVTVTREIF----------KRLEPLSSKEQELWYLDQTI 192 + ++ + RL L + E + + Sbjct: 110 EPSASATLFDDLDTSDGRSPDELVAELRLQLEAVAASAEPGRLRLLLAAESAGALVAAEM 169 Query: 193 NDRGYCVDVALAHTLNQIVDV----------ERTKLDQELESLTYGLVSSSRCLEKLKTW 242 + G D ++ L + +L + + + + Sbjct: 170 SADGLPWDTSVHDALLVDLLGGRPAHGGAPPALLRLAARVREILRAPDLNVDSPPDVLRA 229 Query: 243 LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 L G+ +T Q L P + ++ SR T +E DG Sbjct: 230 L-RRAGID----AASTRQWELQEI--DHPVIASLLEHKR-LSRLLTANGWTWMETWIRDG 281 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 R G TGRW+ LPR Sbjct: 282 RFHPEY-VPGGVVTGRWAASGGGALQLPR------------------------------- 309 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +RS V A G +LVVAD A +E RVLA +A ++ A + A Sbjct: 310 QIRSAVRADRGWRLVVADAAQLEPRVLAALAEDRAMADAGRGTDLYQGLVDAGVV----- 364 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 D RA KV L Y + + A + Sbjct: 365 ----DTRAHAKVAMLGAMYGATSG----------------ESGRLMPRLVRAYPRATGYV 404 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 A+ +G + AW V ++ + + + Sbjct: 405 ERAARAGESGAVVSTRLGRSSPPPGDAWVD----VQQIGRAGEASSADAARARTSARDQG 460 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 R V + L R Sbjct: 461 RFTRNFVVQGSAAEWALCWLAGLRRR---------------------------------- 486 Query: 603 QAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETPDTDEF 642 ++ + G +V +HDE++ PD Sbjct: 487 --LAA---------MERPGSRPHLVFFLHDEVMVHAPDDRVD 517 >gi|39933126|ref|NP_945402.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009] gi|39652751|emb|CAE25490.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009] Length = 204 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 33/184 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET G+ + + + + D ++ LK+ L + Sbjct: 20 VAIDTET--------MGLHPHRD--RLCVVQLSNGDGSADVVQIPQGATDAPNLKKLLGD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 V + H + F+ L F + CT + +R LK + L Sbjct: 70 PAVVKIFHFARFDLAALYKTFG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREL---- 123 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 L K + + + + A Y DV + RL+ + + Sbjct: 124 --------LGIDLSKQQQSSDWGADSLSDAQLA------YAASDVLHLHALRDRLDTMLA 169 Query: 181 KEQE 184 +E Sbjct: 170 RENR 173 >gi|218508865|ref|ZP_03506743.1| ribonuclease III protein [Rhizobium etli Brasil 5] gi|327190020|gb|EGE57137.1| ribonuclease III protein [Rhizobium etli CNPAF512] Length = 208 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 48/208 (23%), Gaps = 27/208 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET + + + D ++ L LE+ Sbjct: 24 VAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLVALLED 73 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 + H F+ VL F + CT + +R L K Sbjct: 74 PTHQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRL---SRTYTD---RHGL---KD 122 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 + L K + + EY DV + +L ++ Sbjct: 123 NLKEMLDVDISKTQQSSDWAAETLSQAQ------LEYAASDVLYLHALRDKLTARLIRDG 176 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIV 211 + + L + Sbjct: 177 RFDHATACFAFLPTRAKLDLLGWEEADI 204 >gi|218245974|ref|YP_002371345.1| 3'-5' exonuclease [Cyanothece sp. PCC 8801] gi|218166452|gb|ACK65189.1| 3'-5' exonuclease [Cyanothece sp. PCC 8801] Length = 210 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 60/213 (28%), Gaps = 35/213 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + +D ET I + + L V LK+ +E Sbjct: 28 IAVDTETMGLIP----------QRDRLCLVQLCDPSGFVTAIRIERGQKEAPKLKQLMEA 77 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119 + V H + F+ L+ F ++ CT + ++ LK++ + L + Sbjct: 78 KTILKVFHYARFDVAQLRYHFGIETQP--IFCTKIASKLARTYTSSHGLKSLVQELEGIE 135 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K + + N + Y DV ++L + Sbjct: 136 LDKTSQSSDW------------GNSANLSVAQ------LSYAANDVRYLIPAKEKLITML 177 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 +E+ +Q N V + I + Sbjct: 178 QREERWQLAEQCFNCIPVFVSLD-LEQYKDIFE 209 >gi|217976351|ref|YP_002360498.1| 3'-5' exonuclease [Methylocella silvestris BL2] gi|217501727|gb|ACK49136.1| 3'-5' exonuclease [Methylocella silvestris BL2] Length = 204 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 46/180 (25%), Gaps = 33/180 (18%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + ID ET + + L D +L L L + Sbjct: 20 VAIDTETMGLVPGRD----------RLCLVQLSRGDGSADLVQIAPAQTAAPNLTRLLAD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 V + H + F+ VL F + CT + ++ LK + L Sbjct: 70 PAVEKLFHFARFDIAVLYKTFG--VMTGPIYCTKIASKLARTYTDRHGLKDLAREL---- 123 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 L K + + A Y DV + +L+ + Sbjct: 124 --------LGIELSKQQQSSDWGGDILSEAQLA------YAASDVLHLHALRTKLDAMLE 169 >gi|311898817|dbj|BAJ31225.1| putative DNA polymerase [Kitasatospora setae KM-6054] Length = 562 Score = 71.7 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 48/300 (16%), Positives = 79/300 (26%), Gaps = 65/300 (21%) Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 + +L E++ + ++ F + G+ L + V P Sbjct: 213 AKLAELALEVQRALGARPFNLDSHTQVIK-AFADRGVQLSSTRSWELKAV------DHPA 265 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 A + SR A GR R +G TGRW+ +PR Sbjct: 266 AALLVRY-KELSRLHAAHGWAWQAAWARGGRFRPEY-VVGGVVTGRWASRGGGALQIPRT 323 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +R V+A G LVVAD A +E RVLA + Sbjct: 324 -------------------------------LRRAVVADPGWLLVVADAAQLEPRVLAAL 352 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G+ + G+ + R K+ L Y + Sbjct: 353 SGDAGLARTAAGGDLYAALAASAFHG---------DREQAKLGLLGAMYGQTGGGIGPLL 403 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 +T + DA + + + +G C W Sbjct: 404 NTL----------------RRRYPDAMGYVEAAARTGEDGGVVASRLGRVCPPPSADWLD 447 Score = 37.8 bits (86), Expect = 7.0, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 49/203 (24%), Gaps = 40/203 (19%) Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 + ++ GL + A + Q G Sbjct: 346 PRVLAALSGDAGLARTAAGGDLYAALAASAFHGDRE-----QAKLGLLGAMYGQTGGGIG 400 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + R+++ +A +T E+G + +R R P PS Sbjct: 401 PLLNTLRRRYPDAMGY----VEAAARTGEDGGVVASRLGRVCPP--------------PS 442 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN-------A 617 L + + + R R ++Q D + Sbjct: 443 ADWLDLTEAPESGEAGGRSARARGR------FTRNFVIQGSGADWALALLAALRRRLAVL 496 Query: 618 TKAGYDIVL---TVHDEIVCETP 637 G L HDE+V TP Sbjct: 497 HSGGDRPHLVFFQ-HDEVVVHTP 518 >gi|239942253|ref|ZP_04694190.1| putative DNA polymerase I [Streptomyces roseosporus NRRL 15998] gi|239988720|ref|ZP_04709384.1| putative DNA polymerase I [Streptomyces roseosporus NRRL 11379] gi|291445710|ref|ZP_06585100.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] gi|291348657|gb|EFE75561.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] Length = 563 Score = 71.7 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 51/383 (13%), Positives = 103/383 (26%), Gaps = 106/383 (27%) Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 ++T + L P + + R + ++ +GR R G + Sbjct: 242 KSTRRWELEEL--DHPAVEPLIAY-KKLYRIWTAHGWSWLQDWVREGRFRPEY-QPGGTV 297 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 +GRW+ +P+ +R V+A G + Sbjct: 298 SGRWTTNGGGALQIPK-------------------------------VIRQAVVADPGWR 326 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 LVVAD +E RVLA ++ ++ ++ DLY + R K+ Sbjct: 327 LVVADADQMEPRVLAAISRDRGLMEVAGHDGDLYKALS--------DRAFSGDREHAKLA 378 Query: 436 ELALGYQGGAK-AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 L Y + + +A+ + A + E + Sbjct: 379 LLGAVYGQTSGDGLKNLAAL-----------------RRRFPLAVAYVDDAARAGEEGRV 421 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 ++G V A + + + + + E +G + R ++ Sbjct: 422 VRTWLGRTSPPVVSAGQDEEAGIPQEAPEGAGDAGGPAGSGGGTARARGRFTRNFVVQGS 481 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 + L+L +G + Q + Sbjct: 482 AADWALLLLAGLRRTLFE------------------------------QGL--------- 502 Query: 615 MNATKAGYDIVLTVHDEIVCETP 637 +V HDE++ P Sbjct: 503 ------RAQLVFFQHDEVIVHCP 519 >gi|220907657|ref|YP_002482968.1| 3'-5' exonuclease [Cyanothece sp. PCC 7425] gi|219864268|gb|ACL44607.1| 3'-5' exonuclease [Cyanothece sp. PCC 7425] Length = 217 Score = 71.7 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 56/208 (26%), Gaps = 34/208 (16%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 + +D ET G+ + + L + + LK+ L Sbjct: 33 DRIAVDTET--------MGLKPQRD--RLCLVQLAHPQGLITVIRIGQGQRSAPHLKQLL 82 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAVGEAL-K 117 E+ T V H + F+ T L+ ++ + CT + ++ LK + L Sbjct: 83 EHPGTTKVFHFARFDITTLRYHLDIWVQP--LFCTKIASKLARTYSPRHGLKDLIRELEG 140 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + K + + N Y DV +L Sbjct: 141 VELDKTVQSSDW------------GNPNNLT------EEQLRYASNDVRYLLAAQAKLVE 182 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAH 205 + +E + + + L Sbjct: 183 MLQRENRWQLAQECFHCLPTLASLDLLE 210 >gi|322786066|gb|EFZ12677.1| hypothetical protein SINV_07179 [Solenopsis invicta] Length = 136 Score = 71.7 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 29/100 (29%) Query: 595 GKLTENIVQAVSRDILAEGMM----------------------------NATKAGYDIVL 626 + VQ + DI+ + M+ N + G +VL Sbjct: 23 RQAVNTKVQGSAADIVKKAMISIEDKIRSYFPDSTVIFPEVHTTRKLRSNLQQRGGYLVL 82 Query: 627 TVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKA 665 +HDE++ E D + ++ M + + LP+K Sbjct: 83 QLHDELLYEVNLVDLKQVAVIIKESMENVCQLSVPLPVKV 122 >gi|184200105|ref|YP_001854312.1| putative DNA polymerase [Kocuria rhizophila DC2201] gi|183580335|dbj|BAG28806.1| putative DNA polymerase [Kocuria rhizophila DC2201] Length = 588 Score = 71.7 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 66/550 (12%), Positives = 129/550 (23%), Gaps = 140/550 (25%) Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 +L AV E ELIA + + + Sbjct: 140 GSLFAVAEEHGPGVT------ELIAELAAQTSACATAR-----NPQRLERLLSLESQGAL 188 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 V ++ R P + + D + +L QE+ + Sbjct: 189 VAADMRHRGIPWNPAVHQQILEDMLGTRP-----------AGEERPARMQELAQEVRTAL 237 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV-----FNNRM 281 + +L L G+ ++ Q + PQ +V Sbjct: 238 AAPALNPDSPVELLKALRNA-GVDVDTTRAFKLQEW--TLVNGQPQEQRVATVTPVLEYK 294 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + SR ++ +GR +G TGRW+ +P+ Sbjct: 295 KLSRVFSATGWHWLDTWVHEGRFHPEY-VVGGVVTGRWAARGGGALQIPK---------- 343 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +R V A G LVVAD A +E RVLA +A + +A Sbjct: 344 ---------------------YIRDAVRADPGHALVVADAAQLEPRVLAILARDDALAEA 382 Query: 402 FETGEDLY-VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 + + ++ + + K+ L Y + A + Sbjct: 383 SRGRDLYTAIAEQGQARGSELTERSH-----AKLALLGAMYGATSGAGGRFMPQL----- 432 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + A + ++G W + Sbjct: 433 -----------TRMFPRAVGYVEHAARVGELGHQVCTYLGRWSPAPGPEWFE-------- 473 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + +A + +A A + + Sbjct: 474 ---VQRATDTQAGERRAAQASRSHGRFSRNFVVQGS------------------------ 506 Query: 581 NTTTRQLTREYTYGGKLTENIVQAV-SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + +I Q + D+ ++V +HDE++ + Sbjct: 507 ---------AAEWALAWLGHIRQGLHGADV-----------DAELVFFLHDEVMVHCAEQ 546 Query: 640 DEFNASMLYH 649 + Sbjct: 547 HADRVQQIVE 556 >gi|148284142|ref|YP_001248232.1| ribonuclease D [Orientia tsutsugamushi str. Boryong] gi|146739581|emb|CAM79331.1| ribonuclease D [Orientia tsutsugamushi str. Boryong] Length = 210 Score = 71.7 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 57/191 (29%), Gaps = 40/191 (20%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFG-------FDDHPVELWDCVHDPVMPQV 56 L ID ET +A D + L F DD V L Sbjct: 20 LAIDTETMGLN---------FARD-RLCLLQFCQESKDDNIDDKEVFLVKFEDQQYNSHN 69 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG 113 LK+ L + T + H + F+ ++ + + CT V ++ LK + Sbjct: 70 LKKLLMDCSRTKIFHFARFDLAAIQYYLGVTLN--NIFCTNVASKLVRTYTDSHGLKDLC 127 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L L + K ++ + +E EY DV I Sbjct: 128 REL------------LGIQISKQCQSSDWGRQSLTSDQE------EYAAKDVVYLHRIKN 169 Query: 174 RLEPLSSKEQE 184 LE + +E Sbjct: 170 ILEEMLIREHR 180 >gi|322830259|gb|EFZ33345.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma cruzi] Length = 274 Score = 71.7 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 39/315 (12%), Positives = 81/315 (25%), Gaps = 65/315 (20%) Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 ++ AD + +E VLA ++ + L+ D + + Sbjct: 1 MIEADYSQLEVVVLAALSRDTRMLQELHDKVDFHCLRVSLMTKEPYEN------------ 48 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + + +F R A Sbjct: 49 ---------------------VVRKAKQERDPHYIQLRQQAKTFSFQRQYGAGIATIATT 87 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 ER+ A Q + +S + + +E G + R R + + Sbjct: 88 TGLTEHEVERLISAEEQHYKDLSRYY----RLVMDCVEAGADRLLRLRTLDAATWSPAMR 143 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 ++L P L Y V + ++ +L VQ ++ +I+ Sbjct: 144 RMILLTEP----LHYFVVPTGSKFDFAKDKKSI------PRLKNYPVQGLAGEIVQIMCG 193 Query: 616 NA---------TKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSN--------PSW 657 +V TVHD + + + + +M+S P Sbjct: 194 KIVRRFYEKRNYDGRAFLVNTVHDCVWIDAHSSVADEVMHDVSEIMSSTSKVMSSLWPDV 253 Query: 658 AKGLPLKAEGYESKR 672 +P A+ + Sbjct: 254 KLDVPFNADVHIGPS 268 >gi|190571105|ref|YP_001975463.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019628|ref|ZP_03335434.1| 3'-5' exo