HHsearch alignment for GI: 254781194 and conserved domain: cd00221
>cd00221 Vsr Very Short Patch Repair (Vsr) Endonuclease. Endonucleases in DNA repair that recognize damaged DNA and cleave the phosphodiester backbone. Vsr endonucleases have a common endonuclease topology that has been tailored for recognition of TG mismatches.
Probab=92.48 E-value=0.81 Score=26.67 Aligned_cols=76 Identities=16% Similarity=0.072 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEE----CC---CCCCCHHHHHHH----------
Q ss_conf 5999999999999978988999714898876627999159919999972----78---988698999999----------
Q gi|254781194|r 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMK----TS---RGRLSNAQKRVI---------- 69 (98)
Q Consensus 7 ~E~~ie~~i~~~~k~~g~~~~k~~~~g~~G~PDli~~~~~g~~~fIEvK----~~---~gkls~~Q~~~~---------- 69 (98)
T Consensus 16 k~TkpE~~vrk~L~~~G~Ryr-~~~k~lpG~PDiv-~~~~k~aIFvdGCFWHgh~~~~~~~pk~n~~fW~~Ki~~N~~RD 93 (115)
T cd00221 16 KDTKPERAVRSALWELGYRFR-KQDKDLPGKPDIV-VPGYRLAIFVDGCFWHGHPCHKRKPPPKNTEFWLEKIERNVERD 93 (115)
T ss_pred CCCHHHHHHHHHHHHCCCEEE-ECCCCCCCCCCEE-ECCCCEEEEECCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 998699999999998899899-6688779999997-35762899932404338887578889853899999999999989
Q ss_pred ----HHHHHCCCEEEEECC
Q ss_conf ----999978986999839
Q gi|254781194|r 70 ----ATLLLYHQKVQVLSS 84 (98)
Q Consensus 70 ----~~l~~~G~~~~Vv~s 84 (98)
T Consensus 94 ~~~~~~L~~~GW~v~~vWE 112 (115)
T cd00221 94 RRVQAALERLGWRVLRVWE 112 (115)
T ss_pred HHHHHHHHHCCCEEEEEEE
T ss_conf 9999999988998999983