HHsearch alignment for GI: 254781194 and conserved domain: pfam01870
>pfam01870 Hjc Archaeal holliday junction resolvase (hjc). This family of archaebacterial proteins are holliday junction resolvases (hjc gene). The Holliday junction is an essential intermediate of homologous recombination. This protein is the archaeal equivalent of RuvC but is not sequence similar.
Probab=97.56 E-value=0.0014 Score=42.94 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHCCCEEEEEECCC--CCCCCCEEEEECCCCEEEEEEECCCC---CCCHHHHHHHHHHH-HCCCEEEEEC
Q ss_conf 99999999997898899971489--88766279991599199999727898---86989999999999-7898699983
Q gi|254781194|r 11 LEKRLVKGSKKLDCLVFKTQFIN--QRGCPDRLIITPNGAHFWVEMKTSRG---RLSNAQKRVIATLL-LYHQKVQVLS 83 (98)
Q Consensus 11 ie~~i~~~~k~~g~~~~k~~~~g--~~G~PDli~~~~~g~~~fIEvK~~~g---kls~~Q~~~~~~l~-~~G~~~~Vv~ 83 (98)
T Consensus 2 ~ERel~~~l~~~gFavvR~~gSG~~~~~~pDiiA~~-g~~~~~iEvKst~~~kiyl~~eqve~L~~f~~~fg~~p~iav 79 (93)
T pfam01870 2 YERELVKILEERGFAVVRAAGSGGAVKPLPDIIAGN-GGVYLVIEVKSRKKDKIYLKKEQVEKLVEFARRFGGEPFLAV 79 (93)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEC-CCEEEEEEEEECCCCCEEECHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 079999999868916999567899888999889856-987999999961698188789999999999997399699999