HHsearch alignment for GI: 254781194 and conserved domain: pfam03838
>pfam03838 RecU Recombination protein U.
Probab=92.51 E-value=1.1 Score=25.91 Aligned_cols=77 Identities=13% Similarity=0.016 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECC---------------------CCCCCCCEEEEECCCCEEEEEEECCC-------
Q ss_conf 59999999999999789889997148---------------------98876627999159919999972789-------
Q gi|254781194|r 7 SEAKLEKRLVKGSKKLDCLVFKTQFI---------------------NQRGCPDRLIITPNGAHFWVEMKTSR------- 58 (98)
Q Consensus 7 ~E~~ie~~i~~~~k~~g~~~~k~~~~---------------------g~~G~PDli~~~~~g~~~fIEvK~~~------- 58 (98)
T Consensus 6 lE~~IN~tn~~Y~~~~~A~I~KkptPi~ivkv~~~~r~~a~I~~ayf~~kSt~DY~Gvy-~G~~i~FEAKeT~nkt~Fpl 84 (167)
T pfam03838 6 LEELINETNQYYLANGIAVIHKKPTPIQIVKVDYPKRSAAVIKEAYFKQKSTTDYNGVY-KGRYIDFEAKETKNKTSFPL 84 (167)
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCEEE-CCEEEEEECCCCCCCCCCCH
T ss_conf 99999999999987797999970788179943786555334677887357767733167-78999998224356674572
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 88698999999999978986999839
Q gi|254781194|r 59 GRLSNAQKRVIATLLLYHQKVQVLSS 84 (98)
Q Consensus 59 gkls~~Q~~~~~~l~~~G~~~~Vv~s 84 (98)
T Consensus 85 ~Ni~~HQi~~L~~~~~~gGiaF~ii~ 110 (167)
T pfam03838 85 KNIHEHQIEHLKQVLKQGGICFVIIR 110 (167)
T ss_pred HHCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 45569999999999988997999999