HHsearch alignment for GI: 254781194 and conserved domain: pfam03838

>pfam03838 RecU Recombination protein U.
Probab=92.51  E-value=1.1  Score=25.91  Aligned_cols=77  Identities=13%  Similarity=0.016  Sum_probs=58.3

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEEEECC---------------------CCCCCCCEEEEECCCCEEEEEEECCC-------
Q ss_conf             59999999999999789889997148---------------------98876627999159919999972789-------
Q gi|254781194|r    7 SEAKLEKRLVKGSKKLDCLVFKTQFI---------------------NQRGCPDRLIITPNGAHFWVEMKTSR-------   58 (98)
Q Consensus         7 ~E~~ie~~i~~~~k~~g~~~~k~~~~---------------------g~~G~PDli~~~~~g~~~fIEvK~~~-------   58 (98)
T Consensus         6 lE~~IN~tn~~Y~~~~~A~I~KkptPi~ivkv~~~~r~~a~I~~ayf~~kSt~DY~Gvy-~G~~i~FEAKeT~nkt~Fpl   84 (167)
T pfam03838         6 LEELINETNQYYLANGIAVIHKKPTPIQIVKVDYPKRSAAVIKEAYFKQKSTTDYNGVY-KGRYIDFEAKETKNKTSFPL   84 (167)
T ss_pred             HHHHHHHHHHHHHHCCEEEEEEECCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCEEE-CCEEEEEECCCCCCCCCCCH
T ss_conf             99999999999987797999970788179943786555334677887357767733167-78999998224356674572


Q ss_pred             CCCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             88698999999999978986999839
Q gi|254781194|r   59 GRLSNAQKRVIATLLLYHQKVQVLSS   84 (98)
Q Consensus        59 gkls~~Q~~~~~~l~~~G~~~~Vv~s   84 (98)
T Consensus        85 ~Ni~~HQi~~L~~~~~~gGiaF~ii~  110 (167)
T pfam03838        85 KNIHEHQIEHLKQVLKQGGICFVIIR  110 (167)
T ss_pred             HHCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             45569999999999988997999999