HHsearch alignment for GI: 254781194 and conserved domain: pfam08722
>pfam08722 TnsA_N TnsA endonuclease N terminal. The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5' end of the transposon is carried out by TnsA, and breakage and joining at the 3' end is carried out by TnsB. The N terminal domain of TnsA is catalytic.
Probab=90.36 E-value=0.74 Score=26.90 Aligned_cols=48 Identities=19% Similarity=0.056 Sum_probs=32.6
Q ss_pred CCCCEEEEECCCCEEEEEEECCCC----CCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 766279991599199999727898----869899999999997898699983
Q gi|254781194|r 36 GCPDRLIITPNGAHFWVEMKTSRG----RLSNAQKRVIATLLLYHQKVQVLS 83 (98)
Q Consensus 36 G~PDli~~~~~g~~~fIEvK~~~g----kls~~Q~~~~~~l~~~G~~~~Vv~ 83 (98)
T Consensus 29 yTpDflv~~~dg~~~~~eVK~~~~l~~~~~~~K~~~~r~~~~~~g~~~~i~T 80 (81)
T pfam08722 29 YTPDFLVTYKDGKPEAVEVKYSEDLEDERTLEKFEIERRYAEERGIPFRIVT 80 (81)
T ss_pred ECCCEEEEEECCCEEEEEEEHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9988999996793999997447563377789999999999998498599970