HHsearch alignment for GI: 254781194 and conserved domain: pfam08774
>pfam08774 VRR_NUC VRR-NUC domain.
Probab=99.68 E-value=1e-16 Score=119.92 Aligned_cols=81 Identities=32% Similarity=0.371 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHHHHCC-CEEEEEECC-------------CCCCCCCEEEEECCCC-EEEEEEECCCCCCCHHHHHHHH
Q ss_conf 059999999999999789-889997148-------------9887662799915991-9999972789886989999999
Q gi|254781194|r 6 LSEAKLEKRLVKGSKKLD-CLVFKTQFI-------------NQRGCPDRLIITPNGA-HFWVEMKTSRGRLSNAQKRVIA 70 (98)
Q Consensus 6 m~E~~ie~~i~~~~k~~g-~~~~k~~~~-------------g~~G~PDli~~~~~g~-~~fIEvK~~~gkls~~Q~~~~~ 70 (98)
T Consensus 1 ~~e~~~e~~~~~~~~k~g~~~~~~~~~~~~~~~~~~~~~~g~~~G~PDli~~~~~~~~~~~iEvK~p~~~~~~~Q~~~~~ 80 (96)
T pfam08774 1 MREGRIEVALVEALKKLGYPLPRKNWGKKGAEALGKYFRYGLRKGVPDLILFLPPGKRFLLVEVKGPGDKLSPEQRAWLD 80 (96)
T ss_pred CCCCEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCHHHHHHHH
T ss_conf 97640000999999982898876553543867731044157879998789981599869999987899998989999999
Q ss_pred HHHHCCCEEEEECCHH
Q ss_conf 9997898699983989
Q gi|254781194|r 71 TLLLYHQKVQVLSSTE 86 (98)
Q Consensus 71 ~l~~~G~~~~Vv~s~e 86 (98)
T Consensus 81 ~l~~~g~~v~V~~~~~ 96 (96)
T pfam08774 81 RLARSGFKVAVCDSVE 96 (96)
T ss_pred HHHHCCCEEEEEECCC
T ss_conf 9997799499960769