HHsearch alignment for GI: 254781194 and conserved domain: pfam08774

>pfam08774 VRR_NUC VRR-NUC domain.
Probab=99.68  E-value=1e-16  Score=119.92  Aligned_cols=81  Identities=32%  Similarity=0.371  Sum_probs=72.5

Q ss_pred             CCHHHHHHHHHHHHHHCC-CEEEEEECC-------------CCCCCCCEEEEECCCC-EEEEEEECCCCCCCHHHHHHHH
Q ss_conf             059999999999999789-889997148-------------9887662799915991-9999972789886989999999
Q gi|254781194|r    6 LSEAKLEKRLVKGSKKLD-CLVFKTQFI-------------NQRGCPDRLIITPNGA-HFWVEMKTSRGRLSNAQKRVIA   70 (98)
Q Consensus         6 m~E~~ie~~i~~~~k~~g-~~~~k~~~~-------------g~~G~PDli~~~~~g~-~~fIEvK~~~gkls~~Q~~~~~   70 (98)
T Consensus         1 ~~e~~~e~~~~~~~~k~g~~~~~~~~~~~~~~~~~~~~~~g~~~G~PDli~~~~~~~~~~~iEvK~p~~~~~~~Q~~~~~   80 (96)
T pfam08774         1 MREGRIEVALVEALKKLGYPLPRKNWGKKGAEALGKYFRYGLRKGVPDLILFLPPGKRFLLVEVKGPGDKLSPEQRAWLD   80 (96)
T ss_pred             CCCCEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCHHHHHHHH
T ss_conf             97640000999999982898876553543867731044157879998789981599869999987899998989999999


Q ss_pred             HHHHCCCEEEEECCHH
Q ss_conf             9997898699983989
Q gi|254781194|r   71 TLLLYHQKVQVLSSTE   86 (98)
Q Consensus        71 ~l~~~G~~~~Vv~s~e   86 (98)
T Consensus        81 ~l~~~g~~v~V~~~~~   96 (96)
T pfam08774        81 RLARSGFKVAVCDSVE   96 (96)
T ss_pred             HHHHCCCEEEEEECCC
T ss_conf             9997799499960769