Query gi|254781194|ref|YP_003065607.1| hypothetical protein CLIBASIA_05505 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 98
No_of_seqs 107 out of 430
Neff 6.2
Searched_HMMs 33803
Date Wed Jun 1 23:22:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781194.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2eo0_A Hypothetical protein S 97.6 0.00053 1.6E-08 45.0 8.8 81 1-82 4-92 (147)
2 >1gef_A Holliday junction reso 97.6 0.00071 2.1E-08 44.2 9.4 74 5-82 2-79 (123)
3 >2wcw_A HJC; type II restricti 97.6 0.0012 3.6E-08 42.9 10.2 79 4-83 4-88 (139)
4 >1hh1_A Holliday junction reso 97.5 0.00092 2.7E-08 43.6 8.7 80 1-81 1-89 (143)
5 >3h1t_A Type I site-specific r 96.7 0.003 8.7E-08 40.6 5.1 80 5-84 23-123 (178)
6 >2fco_A Recombination protein 95.4 0.24 7E-06 29.4 11.0 78 6-84 32-137 (200)
7 >2w00_A HSDR, R.ECOR124I; ATP- 95.2 0.048 1.4E-06 33.5 5.6 61 3-64 28-102 (174)
8 >2vld_A NUCS, UPF0286 protein 95.0 0.044 1.3E-06 33.7 4.9 89 5-93 3-100 (130)
9 >1zp7_A Recombination protein 95.0 0.32 9.6E-06 28.6 11.4 88 6-94 34-158 (206)
10 >3dnx_A Uncharacterized protei 94.6 0.21 6.3E-06 29.7 7.5 55 4-58 9-63 (153)
11 >3fov_A UPF0102 protein RPA032 93.3 0.61 1.8E-05 27.0 7.9 60 11-71 26-91 (134)
12 >2v9k_A Uncharacterized protei 92.0 0.88 2.6E-05 26.1 7.3 85 5-91 313-404 (410)
13 >1ob8_A Holliday-junction reso 61.4 15 0.00043 18.9 9.4 69 9-78 7-81 (135)
14 >2ixs_A SDAI restriction endon 53.5 20 0.00059 18.1 5.7 63 34-96 69-136 (164)
15 >3bac_A DNA ligase; adenylatio 50.2 21 0.00061 18.0 3.7 47 46-96 26-76 (134)
16 >1xmx_A Hypothetical protein V 47.9 25 0.00073 17.6 4.4 52 8-60 45-105 (175)
17 >1zj8_A Probable ferredoxin-de 47.5 25 0.00074 17.6 7.4 61 37-97 132-204 (211)
18 >1y88_A Hypothetical protein A 45.2 27 0.0008 17.3 7.1 88 6-94 14-115 (144)
19 >1dgs_A DNA ligase; AMP comple 42.6 24 0.0007 17.7 3.0 47 48-97 28-78 (120)
20 >1cw0_A Protein (DNA mismatch 37.1 36 0.0011 16.6 6.1 73 9-85 3-98 (137)
21 >3hrl_A Endonuclease-like prot 36.7 37 0.0011 16.6 6.0 75 7-84 3-80 (104)
22 >1zjj_A Hypothetical protein P 35.0 39 0.0012 16.4 3.4 38 58-95 15-57 (131)
23 >2r5v_A PCZA361.1; dioxygenase 33.3 42 0.0012 16.2 4.2 88 8-96 18-107 (207)
24 >1dce_A Protein (RAB geranylge 32.6 20 0.00058 18.2 1.3 42 23-65 14-57 (110)
25 >1l6r_A Hypothetical protein T 32.5 43 0.0013 16.1 6.5 37 58-94 20-58 (160)
26 >3f9r_A Phosphomannomutase; tr 32.1 44 0.0013 16.1 5.9 40 56-95 17-58 (142)
27 >1v2d_A Glutamine aminotransfe 31.7 23 0.00067 17.8 1.5 23 35-57 32-55 (90)
28 >1vb3_A Threonine synthase; PL 30.7 42 0.0012 16.2 2.7 37 57-96 35-74 (118)
29 >2owo_A DNA ligase; protein/DN 30.2 47 0.0014 15.9 3.8 42 49-96 30-75 (118)
30 >1zau_A DNA ligase; AMP; HET: 30.0 17 0.0005 18.5 0.6 43 49-96 28-74 (118)
31 >1aop_A Sirhp, sulfite reducta 28.3 31 0.00091 17.0 1.7 85 13-97 24-147 (154)
32 >2noc_A Putative periplasmic p 28.2 52 0.0015 15.7 3.8 32 4-35 47-78 (99)
33 >1z6n_A Hypothetical protein P 26.9 23 0.00068 17.8 0.9 59 32-94 106-164 (167)
34 >3fzq_A Putative hydrolase; YP 25.9 57 0.0017 15.5 3.0 37 13-51 28-73 (160)
35 >1vsr_A Protein (VSR endonucle 25.7 57 0.0017 15.4 5.5 74 9-86 2-98 (136)
36 >2c5k_T Syntaxin TLG1, T-snare 24.8 59 0.0017 15.4 2.7 35 62-96 15-49 (95)
37 >3jsl_A DNA ligase; NAD+-depen 24.2 61 0.0018 15.3 3.6 46 48-96 26-75 (126)
38 >3hr6_A SPAA, putative surface 23.2 56 0.0017 15.5 2.3 17 45-61 99-115 (147)
39 >3hr6_A SPAA, putative surface 22.1 43 0.0013 16.2 1.5 28 32-60 83-110 (145)
40 >1kl7_A Threonine synthase; th 21.2 70 0.0021 14.9 3.7 40 57-96 65-105 (158)
No 1
>>2eo0_A Hypothetical protein ST1444; holliday junction resolvase, DNA binding protein, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} (A:)
Probab=97.60 E-value=0.00053 Score=44.96 Aligned_cols=81 Identities=14% Similarity=0.220 Sum_probs=62.9
Q ss_pred CCCHHCCHHHHHHHHHHHHHHCCCEEEEEECCCC---CCCCCEEEEECCCCEEEEEEECC-CCC---CCHHHHHHHHHHH
Q ss_conf 9501205999999999999978988999714898---87662799915991999997278-988---6989999999999
Q gi|254781194|r 1 MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQ---RGCPDRLIITPNGAHFWVEMKTS-RGR---LSNAQKRVIATLL 73 (98)
Q Consensus 1 ~~~~~m~E~~ie~~i~~~~k~~g~~~~k~~~~g~---~G~PDli~~~~~g~~~fIEvK~~-~gk---ls~~Q~~~~~~l~ 73 (98)
|++.+++=+..|+.|++.+...|+.++...++|. +-.||++... ++.++.||+|.. ++. +...|..-+-.+.
T Consensus 4 ~~~~~~kG~~~EReL~~~L~~~Gfav~R~p~Sgg~~~~~~pDiiA~~-~~~~~~iEvKst~k~~~iyi~~eqvekL~~f~ 82 (147)
T 2eo0_A 4 VNSNKSRGSSVERYIVSRLRDKGFAVIRAPASGSKRKDHVPDIIALK-SGVIILIEVKSRKNGQKIYIEKEQAEGIREFA 82 (147)
T ss_dssp --------CHHHHHHHHHHHHTTCEEECC-----CCGGGSCSEEEEE-TTEEEEEEEEECCCC-CEEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEECC-CCCEEEEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 31203353399999999999779867970145776788888625037-98379999987156875346999999999999
Q ss_pred -HCCCEEEEE
Q ss_conf -789869998
Q gi|254781194|r 74 -LYHQKVQVL 82 (98)
Q Consensus 74 -~~G~~~~Vv 82 (98)
..|+..+++
T Consensus 83 ~~fg~~p~iA 92 (147)
T 2eo0_A 83 KRSGGELFLG 92 (147)
T ss_dssp HHHTCEEEEE
T ss_pred HHCCCEEEEE
T ss_conf 9679938999
No 2
>>1gef_A Holliday junction resolvase; HJC, hydrolase; 2.00A {Pyrococcus furiosus} (A:)
Probab=97.59 E-value=0.00071 Score=44.23 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=57.9
Q ss_pred HCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECCCCC---CCHHHHHHHHHHH-HCCCEEE
Q ss_conf 20599999999999997898899971489887662799915991999997278988---6989999999999-7898699
Q gi|254781194|r 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR---LSNAQKRVIATLL-LYHQKVQ 80 (98)
Q Consensus 5 ~m~E~~ie~~i~~~~k~~g~~~~k~~~~g~~G~PDli~~~~~g~~~fIEvK~~~gk---ls~~Q~~~~~~l~-~~G~~~~ 80 (98)
+++=+..|+.|++.+...|+.++...+ +|-||++... ++.++.||+|...+. ++..|..-+..+. ..|+..+
T Consensus 2 ~~kG~~~EReL~~~L~~~Gfav~R~pg---Sg~pDiiA~~-~~~~~~iEvKst~k~~iyi~~eqiekL~~f~~~fg~~p~ 77 (123)
T 1gef_A 2 YRKGAQAERELIKLLEKHGFAVVRSAG---SKKVDLVAGN-GKKYLCIEVKVTKKDHLYVGKRDMGRLIEFSRRFGGIPV 77 (123)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEBGG---GSSCSEEEEC-SSCEEEEEEEEESSSCEEECHHHHHHHHHHHHHHTCEEE
T ss_pred CCCCCHHHHHHHHHHHHHCEEEEEECC---CCCCCEEECC-CEEEEEEEEEECCCCCEEECHHHHHHHHHHHHHCCCCEE
T ss_conf 644106799999999972716999548---9997666057-406899999981687566258888999999986197268
Q ss_pred EE
Q ss_conf 98
Q gi|254781194|r 81 VL 82 (98)
Q Consensus 81 Vv 82 (98)
++
T Consensus 78 ia 79 (123)
T 1gef_A 78 LA 79 (123)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
No 3
>>2wcw_A HJC; type II restriction endonuclease, hydrolase, DNA binding protein, holliday junction resolvase; 1.58A {Archaeoglobus fulgidus} PDB: 2wcz_A 2wiw_A 2wiz_A 2wj0_A (A:)
Probab=97.56 E-value=0.0012 Score=42.88 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=61.4
Q ss_pred HHCCHHHHHHHHHHHHHHCCCEEEEEECCC--CCCCCCEEEEECCCCEEEEEEECCCCC---CCHHHHHHHHH-HHHCCC
Q ss_conf 120599999999999997898899971489--887662799915991999997278988---69899999999-997898
Q gi|254781194|r 4 DYLSEAKLEKRLVKGSKKLDCLVFKTQFIN--QRGCPDRLIITPNGAHFWVEMKTSRGR---LSNAQKRVIAT-LLLYHQ 77 (98)
Q Consensus 4 ~~m~E~~ie~~i~~~~k~~g~~~~k~~~~g--~~G~PDli~~~~~g~~~fIEvK~~~gk---ls~~Q~~~~~~-l~~~G~ 77 (98)
++++=+..|+.|+..+...|+.++....+| ....||++... ++.++.||+|...+. ++..|..-+.. .+..|+
T Consensus 4 ~~~kG~~~EReL~~~L~~~GfaviRapgSg~~~~~~pDiiA~~-~~~~~~IEvKst~~~~iyi~~eqiekL~~f~~~fg~ 82 (139)
T 2wcw_A 4 GKSKGTRFERDLLVELWKAGFAAIRVAGAGVSPFPCPDIVAGN-GRTYLAIEVKMRKELPLYLSADEVEQLVTFARGFGA 82 (139)
T ss_dssp ---CHHHHHHHHHHHHHHTTCEEEEBTTSSSCSSCCCSEEEEC-SSCEEEEEEEECSSSCEEEEHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEC-CCCEEEEECCCCCCCCEEECHHHHHHHHHHHHHCCC
T ss_conf 0001369999999999978986998754467888998788406-981686675750266256099999999999981798
Q ss_pred EEEEEC
Q ss_conf 699983
Q gi|254781194|r 78 KVQVLS 83 (98)
Q Consensus 78 ~~~Vv~ 83 (98)
..+++.
T Consensus 83 ~p~iav 88 (139)
T 2wcw_A 83 EAYVAL 88 (139)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 599999
No 4
>>1hh1_A Holliday junction resolving enzyme HJC; holliday junction resolvase, homologous recombination, nuclease domain, archaea; 2.15A {Sulfolobus solfataricus} (A:)
Probab=97.48 E-value=0.00092 Score=43.58 Aligned_cols=80 Identities=16% Similarity=0.205 Sum_probs=60.1
Q ss_pred CCCHHCCHHHHHHHHHHHHHHCCCEEEEEECCC---CCCCCCEEEEECCCCEEEEEEECC-----CCCCCHHHHHHHHHH
Q ss_conf 950120599999999999997898899971489---887662799915991999997278-----988698999999999
Q gi|254781194|r 1 MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFIN---QRGCPDRLIITPNGAHFWVEMKTS-----RGRLSNAQKRVIATL 72 (98)
Q Consensus 1 ~~~~~m~E~~ie~~i~~~~k~~g~~~~k~~~~g---~~G~PDli~~~~~g~~~fIEvK~~-----~gkls~~Q~~~~~~l 72 (98)
|+++..+-..-|+.+.+++.+.|+.++.....| +.|-||++... ++...|||||+- +-..++.|...+..+
T Consensus 1 M~~~~~~G~~~E~~a~~~L~~~Gy~ilr~~~~n~~~~~gEiDIIa~~-~~~lvfVEVKtr~~~~~~~~v~~~k~~kl~~~ 79 (143)
T 1hh1_A 1 MNAKKRKGSAVERNIVSRLRDKGFAVVRAPASGSKRKDPIPDIIALK-NGVIILIEMKSRKDIEGKIYVRREQAEGIIEF 79 (143)
T ss_dssp --------CHHHHHHHHHHHHTTCEEEECCC-------CCCSEEEEE-TTEEEEEEECCEECTTSCEEECHHHHHHHHHH
T ss_pred CCCHHCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCEECCC-CCEEEEEEEEECCCCCCCEEEEHHHHHHHHHH
T ss_conf 96001044478999999998757049995068877769994402467-74399999885157655365208888999999
Q ss_pred HH-CCCEEEE
Q ss_conf 97-8986999
Q gi|254781194|r 73 LL-YHQKVQV 81 (98)
Q Consensus 73 ~~-~G~~~~V 81 (98)
.. .+...++
T Consensus 80 a~~~~~~~~i 89 (143)
T 1hh1_A 80 ARKSGGSLFL 89 (143)
T ss_dssp HHHHTCEEEE
T ss_pred HHHHCHHEEE
T ss_conf 9860713178
No 5
>>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} (A:1-169,A:362-370)
Probab=96.70 E-value=0.003 Score=40.60 Aligned_cols=80 Identities=14% Similarity=0.011 Sum_probs=59.7
Q ss_pred HCCHHHHHHHHH-HHHHHCCCEEE------E-------------EECCCCCCCCCEEEEECCCCE-EEEEEECCCCCCCH
Q ss_conf 205999999999-99997898899------9-------------714898876627999159919-99997278988698
Q gi|254781194|r 5 YLSEAKLEKRLV-KGSKKLDCLVF------K-------------TQFINQRGCPDRLIITPNGAH-FWVEMKTSRGRLSN 63 (98)
Q Consensus 5 ~m~E~~ie~~i~-~~~k~~g~~~~------k-------------~~~~g~~G~PDli~~~~~g~~-~fIEvK~~~gkls~ 63 (98)
.|.|.++..+++ ..++.+||-.. . .......|.||++++.++|.+ +.||.|+++-.++.
T Consensus 23 ~~~E~~vr~~~I~~lL~~lGw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~Dy~l~~~~~~p~~viEaK~~~~~l~~ 102 (178)
T 3h1t_A 23 ALNEADTCRVYVTPKLKESGWENNPSAITEQYTFTDGRVQFKGSKVQRGEQKRADYLLKYTRDFPIAVVEAKPENSPVGQ 102 (178)
T ss_dssp SCCHHHHHHHTHHHHHHHTTTTSTTCEEEEEEECCCCCEEEETTEEEECCCCEEEEEEEEETTEEEEEEEECCTTSCGGG
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCHHH
T ss_conf 89999999998589999769998865015899504653643687466688787508998779908999963789779999
Q ss_pred HHHHHHHHHHHCCCEEEEECC
Q ss_conf 999999999978986999839
Q gi|254781194|r 64 AQKRVIATLLLYHQKVQVLSS 84 (98)
Q Consensus 64 ~Q~~~~~~l~~~G~~~~Vv~s 84 (98)
.-..-.......|.++.++.+
T Consensus 103 ~~~Q~~~Ya~~~~~~~~ilTN 123 (178)
T 3h1t_A 103 GXQQAKDYAEILGLKFAYSTN 123 (178)
T ss_dssp SHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHHHCCCCEEEEEC
T ss_conf 999999978866887799979
No 6
>>2fco_A Recombination protein U (penicillin-binding protein related factor A); flexibility, hydrolase; 1.40A {Geobacillus kaustophilus HTA426} PDB: 1y1o_A (A:)
Probab=95.42 E-value=0.24 Score=29.44 Aligned_cols=78 Identities=13% Similarity=-0.001 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECC---------------------CCCCCCCEEEEECCCCEEEEEEECC-C-----
Q ss_conf 059999999999999789889997148---------------------9887662799915991999997278-9-----
Q gi|254781194|r 6 LSEAKLEKRLVKGSKKLDCLVFKTQFI---------------------NQRGCPDRLIITPNGAHFWVEMKTS-R----- 58 (98)
Q Consensus 6 m~E~~ie~~i~~~~k~~g~~~~k~~~~---------------------g~~G~PDli~~~~~g~~~fIEvK~~-~----- 58 (98)
-.|.+|.+....+....-+...|...| .++.-||...++ .|+++..|.|.- +
T Consensus 32 ~lE~~In~sn~~Y~~~~iA~I~KkPtPi~ivkv~~~~r~~a~i~~a~f~~kSt~DY~Gvy-kG~~i~FEAKeT~~k~~fp 110 (200)
T 2fco_A 32 TLEDDLNATNEYYRERGIAVIHKKPTPVQIVRVDYPKRSAAVITEAYFRQASTTDYNGVY-RGKYIDFEAKETKNKTAFP 110 (200)
T ss_dssp SHHHHHHHHHHHHHHTTSCEEEECCCCC-----------------CCCCCCSSCSEEEEE-TTEEEEEEEEEESCSSEEE
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEE-CCEEEEEECCCCCCCCCCC
T ss_conf 899999999999987797999970788279962477656654677896467988722577-6889999843445766014
Q ss_pred -CCCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf -88698999999999978986999839
Q gi|254781194|r 59 -GRLSNAQKRVIATLLLYHQKVQVLSS 84 (98)
Q Consensus 59 -gkls~~Q~~~~~~l~~~G~~~~Vv~s 84 (98)
...+++|...++....+|+.++++=.
T Consensus 111 l~nI~~HQi~~L~~~~~~ggiaF~iI~ 137 (200)
T 2fco_A 111 LKNFHAHQIRHMEQVVAHGGICFAILR 137 (200)
T ss_dssp GGGSCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHCCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 230779999999999978997999999
No 7
>>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, plasmid, helicase, hydrolase, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} (A:1-54,A:129-248)
Probab=95.18 E-value=0.048 Score=33.47 Aligned_cols=61 Identities=21% Similarity=0.275 Sum_probs=47.6
Q ss_pred CHHCCHHHHHHHHHHHHHHCCCEEEEE------------E-CCCCCCCCCEEEEECCCCE-EEEEEECCCCCCCHH
Q ss_conf 012059999999999999789889997------------1-4898876627999159919-999972789886989
Q gi|254781194|r 3 TDYLSEAKLEKRLVKGSKKLDCLVFKT------------Q-FINQRGCPDRLIITPNGAH-FWVEMKTSRGRLSNA 64 (98)
Q Consensus 3 ~~~m~E~~ie~~i~~~~k~~g~~~~k~------------~-~~g~~G~PDli~~~~~g~~-~fIEvK~~~gkls~~ 64 (98)
.+|-+|+++|+.+++.|..-|.-+++. . ..+..=-||+.++. +|-. ..||+|+|+-.....
T Consensus 28 ~~~~~e~~~~~~~~~~l~~~~~~~~~~~~nN~f~VvnQ~~~~g~~~~R~DIvLlV-NGLPLV~IELK~~~~~i~eA 102 (174)
T 2w00_A 28 DSYQSESDLERELIQDLRNQGYEFISVLXRNKVQIIQQFEQAGSHANRYDVTILV-NGLPLVQIELKKRGVAIREA 102 (174)
T ss_dssp SCCSSHHHHHHHHHHHHHHTTCEECCCGGGSCEEEEECCC------CCCEEEEEE-TTEEEEEEEECCTTCCHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHCCCEECCCCCCCEEEEEEEEEECCCCCEEEEEEEEE-CCCEEEEEEECCCCCCHHHH
T ss_conf 1027999999999999998796348985378699999889879996131399999-88167999868798999999
No 8
>>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi} (A:122-251)
Probab=94.98 E-value=0.044 Score=33.69 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=58.5
Q ss_pred HCCHHHHHHHHHHHHHHCC-CE-EEEEECCCCCCCCCEEEEECCCCEEEEEEECCCCCCC-HHHHH-HHHHHHHCC----
Q ss_conf 2059999999999999789-88-9997148988766279991599199999727898869-89999-999999789----
Q gi|254781194|r 5 YLSEAKLEKRLVKGSKKLD-CL-VFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLS-NAQKR-VIATLLLYH---- 76 (98)
Q Consensus 5 ~m~E~~ie~~i~~~~k~~g-~~-~~k~~~~g~~G~PDli~~~~~g~~~fIEvK~~~gkls-~~Q~~-~~~~l~~~G---- 76 (98)
.++|+++|..|.+.+...| ++ ...-..+-..|.=|++...++|+++-||+|++..+.. -.|.. ....+.+.+
T Consensus 3 ~~~E~dLe~~i~~n~~~l~~g~~~v~~E~~~~~g~IDll~~d~~~~~ViIElK~~~~~~~~i~Ql~~Y~~~~~~~~~~~~ 82 (130)
T 2vld_A 3 TGSEAEXANLIFENPRVIEEGFKPIYREKPIRHGIVDVXGVDKDGNIVVLELKRRKADLHAVSQXKRYVDSLKEEYGENV 82 (130)
T ss_dssp --CHHHHHHHHHHCGGGTCTTCEEEEEEEEETTEEEEEEEECTTSCEEEEEECSSCBCHHHHHHHHHHHHHHHHHHCSCE
T ss_pred EECHHHHHHHHHHCHHHHCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 52299999999869998678968999999718886689999179999999997047987489999999999861259991
Q ss_pred CEEEEECCHHH-HHHHHH
Q ss_conf 86999839899-999999
Q gi|254781194|r 77 QKVQVLSSTEE-VDGFLR 93 (98)
Q Consensus 77 ~~~~Vv~s~e~-v~~~i~ 93 (98)
--..+|.+.+. +.+.++
T Consensus 83 ~gi~~a~~~~~~~~~~~~ 100 (130)
T 2vld_A 83 RGILVAPSLTEGAKKLLE 100 (130)
T ss_dssp EEEEEESCBCHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHH
T ss_conf 399997869989999999
No 9
>>1zp7_A Recombination protein U; recombination,DNA-binding protein,resolvase, DNA binding protein; 2.25A {Bacillus subtilis} PDB: 1rzn_A (A:)
Probab=94.97 E-value=0.32 Score=28.63 Aligned_cols=88 Identities=15% Similarity=0.037 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECC---------------------CCCCCCCEEEEECCCCEEEEEEECCCC-----
Q ss_conf 059999999999999789889997148---------------------988766279991599199999727898-----
Q gi|254781194|r 6 LSEAKLEKRLVKGSKKLDCLVFKTQFI---------------------NQRGCPDRLIITPNGAHFWVEMKTSRG----- 59 (98)
Q Consensus 6 m~E~~ie~~i~~~~k~~g~~~~k~~~~---------------------g~~G~PDli~~~~~g~~~fIEvK~~~g----- 59 (98)
-.|..|.....-+....=+.+.|...| .++.-||...++ .|+++..|.|.-.+
T Consensus 34 ~lE~~In~sn~~Y~~~~iAvI~KkPtPi~ivkv~~~~r~~a~I~~ayf~~kSt~DY~Gvy-kG~~i~FEAKeT~nk~~fp 112 (206)
T 1zp7_A 34 TLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAYFKQSSTTDYNGIY-KGRYIDFEAKETKNKTSFP 112 (206)
T ss_dssp CHHHHHHHHHHHHHHTTSCEEEECCCCCCSCC-------------CCCCCCSSCSEEEEE-TTEEEEEEEEECCCSSEEE
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCEEE-CCEEEEEECCCCCCCCCCC
T ss_conf 899999999999997798999972798289961576666745566896345778710377-7899999743335776015
Q ss_pred --CCCHHHHHHHHHHHHCCCEEEEECC---------HHHHHHHHHH
Q ss_conf --8698999999999978986999839---------8999999998
Q gi|254781194|r 60 --RLSNAQKRVIATLLLYHQKVQVLSS---------TEEVDGFLRM 94 (98)
Q Consensus 60 --kls~~Q~~~~~~l~~~G~~~~Vv~s---------~e~v~~~i~~ 94 (98)
..+++|...++....+|+.++++=+ .+++.++.+.
T Consensus 113 l~ni~~HQi~~L~~~~~~gGIaF~ii~F~~~~y~ip~~~l~~~~~~ 158 (206)
T 1zp7_A 113 LQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDR 158 (206)
T ss_dssp GGGSCHHHHHHHHHHHHTTCEEEEEEEETTEEEEEEHHHHHHHHHG
T ss_pred HHHCCHHHHHHHHHHHHCCCEEEEEEEECCEEEEEEHHHHHHHHHH
T ss_conf 3337299999999999789989999998888999879999999998
No 10
>>3dnx_A Uncharacterized protein SPO1766; structural genomics, APC88088, protein of unknown function, PSI-2, protein structure initiative; HET: MSE; 1.94A {Silicibacter pomeroyi} (A:)
Probab=94.56 E-value=0.21 Score=29.68 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=47.4
Q ss_pred HHCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECCC
Q ss_conf 1205999999999999978988999714898876627999159919999972789
Q gi|254781194|r 4 DYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSR 58 (98)
Q Consensus 4 ~~m~E~~ie~~i~~~~k~~g~~~~k~~~~g~~G~PDli~~~~~g~~~fIEvK~~~ 58 (98)
..++...|++.+-+++.+.|+.+.--.+....--||++.+.++|.+..||+|...
T Consensus 9 ~~~~~~~l~r~v~r~l~~~g~~~~~Ev~l~~g~RaDv~a~~~~g~~~~iEiKvSr 63 (153)
T 3dnx_A 9 DLQPGQRLARGVARHLRAHGFVSVEEFVPARGLRVDVXGLGPKGEIWVIECKSSR 63 (153)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEEEEECTTCCEEEEEECSSH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCH
T ss_conf 4775879999999999977995666660689977889998899949999973578
No 11
>>3fov_A UPF0102 protein RPA0323; structural genomics, APC7380, PSI-2, protein structure initiative; 1.88A {Rhodopseudomonas palustris CGA009} (A:)
Probab=93.31 E-value=0.61 Score=26.99 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECC------CCCCCHHHHHHHHH
Q ss_conf 99999999997898899971489887662799915991999997278------98869899999999
Q gi|254781194|r 11 LEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTS------RGRLSNAQKRVIAT 71 (98)
Q Consensus 11 ie~~i~~~~k~~g~~~~k~~~~g~~G~PDli~~~~~g~~~fIEvK~~------~gkls~~Q~~~~~~ 71 (98)
-|.....++++.|+.++.--.-.+.|==|||.. .++...|||||+- -..+++.+...+.+
T Consensus 26 gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDlIa~-~~~~LvFVEVK~R~~~~~~~eav~~~K~~ri~~ 91 (134)
T 3fov_A 26 AEASAADYLERQGYRILARRFKTRCGEIDLVAQ-RDALVAFVEVKARGNVDDAAYAVTPRQQSRIVA 91 (134)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEE-ETTEEEEEEEEEC------CCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEE-CCCEEEEEEEEEECCCCCHHHCCCHHHHHHHHH
T ss_conf 999999999987999943422579996067998-199999999887448899767399999999999
No 12
>>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domain, lyase; HET: EPE; 2.0A {Homo sapiens} (A:1-410)
Probab=92.01 E-value=0.88 Score=26.09 Aligned_cols=85 Identities=14% Similarity=0.175 Sum_probs=58.7
Q ss_pred HCCHHHHHHHHHHHH-HHCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECCC-CCCCHHHHHHH-HHHHHCCCEEEE
Q ss_conf 205999999999999-978988999714898876627999159919999972789-88698999999-999978986999
Q gi|254781194|r 5 YLSEAKLEKRLVKGS-KKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSR-GRLSNAQKRVI-ATLLLYHQKVQV 81 (98)
Q Consensus 5 ~m~E~~ie~~i~~~~-k~~g~~~~k~~~~g~~G~PDli~~~~~g~~~fIEvK~~~-gkls~~Q~~~~-~~l~~~G~~~~V 81 (98)
.+-|.-||.-|.+.+ +..++--++|++.|+--+==+++ .+||.+.+|++.|. ..++..+...+ +.+++....+.|
T Consensus 313 r~~~~SVee~I~~~i~~~~~~~~~~fh~sGREDvDVRmL--G~GRPFviEi~nP~r~~~~~~~l~~le~~IN~~~~~V~V 390 (410)
T 2v9k_A 313 RKLESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTL--GNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNKIQV 390 (410)
T ss_dssp BSSSCCHHHHHHTTHHHHHTCSEEEEEESSCCCTTCEEE--EEEEEEEEEEESCSCCCCCHHHHHHHHHHHHTTCSSEEE
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEC--CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 768778899988999987088734896367565541212--799836999247745668889999999998445993899
Q ss_pred EC----CHHHHHHH
Q ss_conf 83----98999999
Q gi|254781194|r 82 LS----STEEVDGF 91 (98)
Q Consensus 82 v~----s~e~v~~~ 91 (98)
-+ +-+++..+
T Consensus 391 ~~L~~v~r~~~~~i 404 (410)
T 2v9k_A 391 RDLQLVTREAIGHM 404 (410)
T ss_dssp EEEEEECTHHHHHH
T ss_pred EEEEEECHHHHHHH
T ss_conf 97489868997555
No 13
>>1ob8_A Holliday-junction resolvase; hydrolase, enzyme, homologous recombination, holliday junction resolving enzyme, nuclease, archaea; 1.8A {Sulfolobus solfataricus} (A:)
Probab=61.42 E-value=15 Score=18.92 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECC--CCCCCCCEEEEECCCCEEEEEEECCCC---CCCHHHHHHHHHHHH-CCCE
Q ss_conf 999999999999789889997148--988766279991599199999727898---869899999999997-8986
Q gi|254781194|r 9 AKLEKRLVKGSKKLDCLVFKTQFI--NQRGCPDRLIITPNGAHFWVEMKTSRG---RLSNAQKRVIATLLL-YHQK 78 (98)
Q Consensus 9 ~~ie~~i~~~~k~~g~~~~k~~~~--g~~G~PDli~~~~~g~~~fIEvK~~~g---kls~~Q~~~~~~l~~-~G~~ 78 (98)
.+++..|++..+..|..+++-... +..=+||++.- ++|.+..|++|.... .++..|...+..+.. .|+.
T Consensus 7 ~Rf~~el~di~~~~gf~vfr~~~~~~~~~~~~d~ia~-~gg~v~aI~vk~~~~~~~~~~r~~ie~l~~~ak~~gak 81 (135)
T 1ob8_A 7 KNAERELVSILRGEGFNAVRIPTSNSSPNPLPDIFAT-KGNTLLSIECKSTWENKVKVKEHQVRKLLDFLSMFTMK 81 (135)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCC-----CCSCSEEEE-ETTEEEEEEEEEESSSEEEECHHHHHHHHHHHHTSSSE
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEE-CCCEEEEEEEEECCCCEEEECHHHHHHHHHHHHHCCCC
T ss_conf 6999999999985993599955789987899978996-79869999999557986988899999999999964976
No 14
>>2ixs_A SDAI restriction endonuclease; hydrolase, domain architecture; HET: EPE; 2.0A {Streptomyces diastaticus} (A:160-323)
Probab=53.51 E-value=20 Score=18.13 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=42.0
Q ss_pred CCCCCCEEEEECCCCE-EEEEEECCCCCCCHHHHHHHHHHHHC-CCEEEEEC---CHHHHHHHHHHHH
Q ss_conf 8876627999159919-99997278988698999999999978-98699983---9899999999862
Q gi|254781194|r 34 QRGCPDRLIITPNGAH-FWVEMKTSRGRLSNAQKRVIATLLLY-HQKVQVLS---STEEVDGFLRMLE 96 (98)
Q Consensus 34 ~~G~PDli~~~~~g~~-~fIEvK~~~gkls~~Q~~~~~~l~~~-G~~~~Vv~---s~e~v~~~i~~l~ 96 (98)
+.-.||+++..++..+ +|||.=+..|-.++.-+..+.+|-.. .....-|. +....++++.+|+
T Consensus 69 h~klPDvVl~~~~~~wL~liEaVtS~GPv~~~R~~eL~~l~~~~~~glvfVTAF~dr~~fkk~~~eiA 136 (164)
T 2ixs_A 69 HGRMPDLVLHDKVRKWLFLMEAVKSKGPFDEERHRTLRELFATPVAGLVFVNCFENREAMRQWLPELA 136 (164)
T ss_dssp TCCCCSEEEEETTTTEEEEEEECCTTCCCCHHHHHHHHHHTCBTTBEEEEEEEESSHHHHGGGGGGCC
T ss_pred CCCCCCEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHC
T ss_conf 56799889982899989999997577998989999999997367888699985589999999999733
No 15
>>3bac_A DNA ligase; adenylation domain, DNA damage, DNA repair, DNA replication, NAD; HET: DNA 3B9; 3.00A {Haemophilus influenzae} (A:19-55,A:174-270)
Probab=50.19 E-value=21 Score=18.05 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=37.6
Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEE----EEECCHHHHHHHHHHHH
Q ss_conf 9919999972789886989999999999789869----99839899999999862
Q gi|254781194|r 46 NGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKV----QVLSSTEEVDGFLRMLE 96 (98)
Q Consensus 46 ~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~----~Vv~s~e~v~~~i~~l~ 96 (98)
+.--+..|.|--- ..|...++.|+.+|+++ .+|.|.+++.++++++.
T Consensus 26 ~~~~y~~e~k~d~----~tq~e~L~~L~~lGF~v~~~~~~~~~~~ev~~~i~~~~ 76 (134)
T 3bac_A 26 KPLTFCCEPKLDP----TTHYARLQWLKSIGIPVNPEIRLCNGADEVLDFYQDIQ 76 (134)
T ss_dssp SSCEEEEEEEESC----SBHHHHHHHHHHTTCCBCTTCEEEEHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEECC----CCHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHH
T ss_conf 7823898765526----53999999999838976655148658189999999998
No 16
>>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, structural genomics, PSI, midwest center for structural genomics; 2.10A {Vibrio cholerae} (A:142-182,A:252-385)
Probab=47.85 E-value=25 Score=17.59 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHCCCEE---E--EEECCCCCC----CCCEEEEECCCCEEEEEEECCCCC
Q ss_conf 9999999999999789889---9--971489887----662799915991999997278988
Q gi|254781194|r 8 EAKLEKRLVKGSKKLDCLV---F--KTQFINQRG----CPDRLIITPNGAHFWVEMKTSRGR 60 (98)
Q Consensus 8 E~~ie~~i~~~~k~~g~~~---~--k~~~~g~~G----~PDli~~~~~g~~~fIEvK~~~gk 60 (98)
|--+-..++...+..+... . .+..++... ==|+++.. +++.++||+|+.+-+
T Consensus 45 E~yV~~~i~~l~~e~~~~~d~~~nv~I~~~~gd~~~~nELDV~~~~-~n~L~iIECKTg~~~ 105 (175)
T 1xmx_A 45 ETLVHSTVKQIQDDMPTIQDRSLNVQVYRQLGEREVRNELDVATVV-NNKLHIIECKTKGMR 105 (175)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEEEEEEEEEETTEEEEEEEEEEEEE-TTEEEEEEEESSCCC
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEE-CCEEEEEEECCCCCC
T ss_conf 9999999999875125551245655995068887656405899998-999999995688877
No 17
>>1zj8_A Probable ferredoxin-dependent nitrite reductase NIRA; sulfite, siroheme, Fe4-S4, Cys- Tyr covalent bond; HET: SRM; 2.80A {Mycobacterium tuberculosis H37RV} (A:46-169,A:332-418)
Probab=47.48 E-value=25 Score=17.56 Aligned_cols=61 Identities=16% Similarity=0.167 Sum_probs=40.5
Q ss_pred CCCEEEEECC-CCEEEEEEECCCCCCCHHHHHHHHHHHH-CCC-E--------EEEE-CCHHHHHHHHHHHHC
Q ss_conf 6627999159-9199999727898869899999999997-898-6--------9998-398999999998623
Q gi|254781194|r 37 CPDRLIITPN-GAHFWVEMKTSRGRLSNAQKRVIATLLL-YHQ-K--------VQVL-SSTEEVDGFLRMLEC 97 (98)
Q Consensus 37 ~PDli~~~~~-g~~~fIEvK~~~gkls~~Q~~~~~~l~~-~G~-~--------~~Vv-~s~e~v~~~i~~l~~ 97 (98)
..|.+.+++. ...+++=++.|+|++|+.|...+..+.+ .|. . ..+. -+.+++.+++++|+.
T Consensus 132 ~~~~~Gv~~q~dg~~~vri~~p~G~lt~~ql~~la~iA~kyg~g~irlTtrQ~i~l~~i~~~~~~~i~~~L~~ 204 (211)
T 1zj8_A 132 PIDHVGVQRLKNGLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDA 204 (211)
T ss_dssp CCCCCEEEECTTSSEEEEEBCBTTEEEHHHHHHHHHHHHHHTCCCEEECTTSCEEEEEECHHHHHHHHHHHHH
T ss_pred CCCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf 5533643752688457645458845562565999999985399869976400515304633409999999997
No 18
>>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure initiative, PSI; 1.85A {Archaeoglobus fulgidus} (A:1-144)
Probab=45.19 E-value=27 Score=17.35 Aligned_cols=88 Identities=10% Similarity=-0.007 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHH-HHHHCCCEEEE---EECCCCCCCCCEEEEECCCCEEEEEEECCCCCCCHHHHHH------HHHHHHC
Q ss_conf 059999999999-99978988999---7148988766279991599199999727898869899999------9999978
Q gi|254781194|r 6 LSEAKLEKRLVK-GSKKLDCLVFK---TQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRV------IATLLLY 75 (98)
Q Consensus 6 m~E~~ie~~i~~-~~k~~g~~~~k---~~~~g~~G~PDli~~~~~g~~~fIEvK~~~gkls~~Q~~~------~~~l~~~ 75 (98)
|.-.++|.+++. .+++.|+.+.. +..++..|-=|++... ++..++||+|.-.+......... ...+...
T Consensus 14 l~~~~FE~~lv~~ll~~~Gy~~~~~~~~~~~~~D~giD~~~~~-~~~~~~VqcK~~~~~v~~~~v~~~~~~~~~~~~~~~ 92 (144)
T 1y88_A 14 RENLYFQGHMVARLLEEHGFETKTNVIVQGNCVEQEIDVVAER-DGERYMIECKFHNIPVYTGLKEAMYTYARFLDVEKH 92 (144)
T ss_dssp --CHHHHHHHHHHHHHTTTCEEEEEEEEECSSSEEEEEEEEEE-TTEEEEEEECCCSSSCEECHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEECEEECCCCCCCCEEEEEEE-CCEEEEEEEEECCCCCCCCCHHEEEHHHHHHHHHHC
T ss_conf 7227699999999999769907114586788788624899997-990899999972678889810111046578777642
Q ss_pred CCEEEEE--CC--HHHHHHHHHH
Q ss_conf 9869998--39--8999999998
Q gi|254781194|r 76 HQKVQVL--SS--TEEVDGFLRM 94 (98)
Q Consensus 76 G~~~~Vv--~s--~e~v~~~i~~ 94 (98)
++...|. .+ .+++.++.+.
T Consensus 93 ~~~~gi~iT~~~ft~~A~~~a~~ 115 (144)
T 1y88_A 93 GFTQPWIFTNTKFSEEAKKYAGC 115 (144)
T ss_dssp TCSEEEEECSSEECHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHH
T ss_conf 78628999789679999999997
No 19
>>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} (A:82-117,A:232-315)
Probab=42.56 E-value=24 Score=17.70 Aligned_cols=47 Identities=21% Similarity=0.054 Sum_probs=36.4
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHCCCEE----EEECCHHHHHHHHHHHHC
Q ss_conf 19999972789886989999999999789869----998398999999998623
Q gi|254781194|r 48 AHFWVEMKTSRGRLSNAQKRVIATLLLYHQKV----QVLSSTEEVDGFLRMLEC 97 (98)
Q Consensus 48 ~~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~----~Vv~s~e~v~~~i~~l~~ 97 (98)
--+.+|.|-.+- ..|...++.|+..|+++ .+|.|.+++.+.++.+.-
T Consensus 28 ~~~~~E~K~~~~---~t~~e~l~~L~~~GF~v~~~~~~~~~~~~i~~~~~~~~~ 78 (120)
T 1dgs_A 28 SLYTVEHKVSGL---KSQYELLLWLKEKGFPVEHCYEKALGAEGVEEVYRRGLA 78 (120)
T ss_dssp CEEEEEECCCCC---CBHHHHHHHHHHTTCCCCSCEEEEEHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCC---CCHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHH
T ss_conf 438998745885---699999999997799878675860899999999999998
No 20
>>1cw0_A Protein (DNA mismatch endonuclease); protein-DNA complex, intercalation, zinc, hydrolase/DNA; HET: DNA; 2.30A {Escherichia coli} (A:19-155)
Probab=37.13 E-value=36 Score=16.60 Aligned_cols=73 Identities=15% Similarity=0.049 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECCCCC---------C--------------CHHH
Q ss_conf 9999999999997898899971489887662799915991999997278988---------6--------------9899
Q gi|254781194|r 9 AKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR---------L--------------SNAQ 65 (98)
Q Consensus 9 ~~ie~~i~~~~k~~g~~~~k~~~~g~~G~PDli~~~~~g~~~fIEvK~~~gk---------l--------------s~~Q 65 (98)
|..|+.+...+...|..+..-+.. -++.+|+. + ++ .-+.||+=...=. + ...-
T Consensus 3 S~~E~~l~~~L~~~G~~~~~q~~v-~~~~~D~~-~-~~-~rl~IE~DG~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~rd 78 (137)
T 1cw0_A 3 TAIEKRLASLLTGQGLAFRVQDAS-LPGRPDFV-V-DE-YRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERD 78 (137)
T ss_dssp CHHHHHHHHHHHHTTCCCEECCTT-STTCCSEE-E-GG-GTEEEEEECTTTTTCSSTTCCCCSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCEEEECCCC-CCCEEEEE-E-CC-CEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 989999999999889889965677-79976699-6-26-30389972010157764335688741888888876468989
Q ss_pred HHHHHHHHHCCCEEEEECCH
Q ss_conf 99999999789869998398
Q gi|254781194|r 66 KRVIATLLLYHQKVQVLSST 85 (98)
Q Consensus 66 ~~~~~~l~~~G~~~~Vv~s~ 85 (98)
+.....|+.+|+.+.-+.+.
T Consensus 79 ~~r~~~L~~~GW~vlr~~~~ 98 (137)
T 1cw0_A 79 RRDISRLQELGWRVLIVWEC 98 (137)
T ss_dssp HHHHHHHHHTTCEEEEEEHH
T ss_pred HHHHHHHHHCCCEEEEEECC
T ss_conf 99999999789989999667
No 21
>>3hrl_A Endonuclease-like protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Neisseria gonorrhoeae fa 1090} (A:)
Probab=36.70 E-value=37 Score=16.56 Aligned_cols=75 Identities=12% Similarity=-0.037 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCEEEEECCCCEEEEEEECCCCC-CCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 599999999999997898--899971489887662799915991999997278988-69899999999997898699983
Q gi|254781194|r 7 SEAKLEKRLVKGSKKLDC--LVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR-LSNAQKRVIATLLLYHQKVQVLS 83 (98)
Q Consensus 7 ~E~~ie~~i~~~~k~~g~--~~~k~~~~g~~G~PDli~~~~~g~~~fIEvK~~~gk-ls~~Q~~~~~~l~~~G~~~~Vv~ 83 (98)
.+|..|+.+...+.+.|- .-+....+...+.+|+. + |+. -+.||+-.+.-. ....-....+.|..+|+.+.=+.
T Consensus 3 ~~S~~E~~l~~~l~~~gl~~~~~~~~~~~~~~~~D~~-~-~~~-rlaIE~DG~~~~~~~~~d~~R~~~L~~~Gw~vlrv~ 79 (104)
T 3hrl_A 3 AXSEAEAKLWQHLRAGRLNGYKFRRQQPXGNYIVDFX-C-VTP-KLIVEADGGQHAEQAVYDHARTVYLNSLGFTVLRFW 79 (104)
T ss_dssp CCCHHHHHHHHHHGGGTTTTCCEEEEEEETTEEEEEE-E-TTT-TEEEEEEC-------CCCHHHHHHHHHTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEE-C-CCC-CEEEEECCCHHCCCCCCHHHHHHHHHHCCCEEEEEC
T ss_conf 9999999999999844757986560276566666110-4-432-889997670213411422999999998998899960
Q ss_pred C
Q ss_conf 9
Q gi|254781194|r 84 S 84 (98)
Q Consensus 84 s 84 (98)
.
T Consensus 80 ~ 80 (104)
T 3hrl_A 80 N 80 (104)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 22
>>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genomics; 1.85A {Pyrococcus horikoshii OT3} (A:1-69,A:202-263)
Probab=34.97 E-value=39 Score=16.39 Aligned_cols=38 Identities=16% Similarity=0.052 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEC-----CHHHHHHHHHHH
Q ss_conf 98869899999999997898699983-----989999999986
Q gi|254781194|r 58 RGRLSNAQKRVIATLLLYHQKVQVLS-----STEEVDGFLRML 95 (98)
Q Consensus 58 ~gkls~~Q~~~~~~l~~~G~~~~Vv~-----s~e~v~~~i~~l 95 (98)
+.++-|.-..++++|+++|.++.++- +.+++.+.++.+
T Consensus 15 ~~~~~~~a~e~l~~L~~~G~~~~ivTN~~~~~~~~~~~~L~~l 57 (131)
T 1zjj_A 15 GNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKM 57 (131)
T ss_dssp TTEECTTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9995844999999999779968999489999999999999976
No 23
>>2r5v_A PCZA361.1; dioxygenase, non-heme iron, vancomycin, oxidoreductase; HET: HHH; 2.30A {Amycolatopsis orientalis} (A:151-357)
Probab=33.34 E-value=42 Score=16.23 Aligned_cols=88 Identities=6% Similarity=0.010 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHCCCEEE-EEECCCC-CCCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCH
Q ss_conf 99999999999997898899-9714898-876627999159919999972789886989999999999789869998398
Q gi|254781194|r 8 EAKLEKRLVKGSKKLDCLVF-KTQFINQ-RGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSST 85 (98)
Q Consensus 8 E~~ie~~i~~~~k~~g~~~~-k~~~~g~-~G~PDli~~~~~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~~Vv~s~ 85 (98)
-+++++.+.=|.+.+|-... .+..++. .++.-+.+..+++ ...+++-.+.+-.......-.......++..+++..+
T Consensus 18 ~~Dl~~ai~FY~~~LGf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~~~~~~~~~~~~~~~~~~~g~~Hiaf~V 96 (207)
T 2r5v_A 18 AGDLGPTVEYYERALGFRQIFDEHIVVGAQAMNSTVVQSASG-AVTLTLIEPDRNADPGQIDEFLKDHQGAGVQHIAFNS 96 (207)
T ss_dssp TTCHHHHHHHHHHHHCCEEEEEEEEEETTEEEEEEEEECTTS-CCEEEEEEECTTSBCCHHHHHHHHHTSSEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEEEECCCCC-CEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEEE
T ss_conf 768899999999873956874540135750388874205788-6545553367778720466676550576513677872
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999862
Q gi|254781194|r 86 EEVDGFLRMLE 96 (98)
Q Consensus 86 e~v~~~i~~l~ 96 (98)
++++.+.+.|+
T Consensus 97 ~did~~~~~L~ 107 (207)
T 2r5v_A 97 NDAVRAVKALS 107 (207)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 76999999998
No 24
>>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} (A:242-351)
Probab=32.60 E-value=20 Score=18.18 Aligned_cols=42 Identities=21% Similarity=0.209 Sum_probs=30.8
Q ss_pred CCEEEEEECC--CCCCCCCEEEEECCCCEEEEEEECCCCCCCHHH
Q ss_conf 9889997148--988766279991599199999727898869899
Q gi|254781194|r 23 DCLVFKTQFI--NQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65 (98)
Q Consensus 23 g~~~~k~~~~--g~~G~PDli~~~~~g~~~fIEvK~~~gkls~~Q 65 (98)
+++..-|.-| -.+|.-+|+++. ||..++||-.+|.|+.++.+
T Consensus 14 ~cltv~FSrpv~vg~~~~~LlL~~-D~~Pl~VeWRTp~gr~r~s~ 57 (110)
T 1dce_A 14 ACLSVCFSRPLTVGSRMGTLLLMV-DEAPLSVEWRTPDGRNRPSH 57 (110)
T ss_dssp TEEEEEEEEEECTTBTTBCEEEEE-SSSEECCCCBCTTSSCCSEE
T ss_pred CEEEEEECCCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCCCC
T ss_conf 504676246655443443001003-56654243358877676462
No 25
>>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolase, midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} (A:1-85,A:153-227)
Probab=32.47 E-value=43 Score=16.15 Aligned_cols=37 Identities=16% Similarity=0.005 Sum_probs=14.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEC--CHHHHHHHHHH
Q ss_conf 98869899999999997898699983--98999999998
Q gi|254781194|r 58 RGRLSNAQKRVIATLLLYHQKVQVLS--STEEVDGFLRM 94 (98)
Q Consensus 58 ~gkls~~Q~~~~~~l~~~G~~~~Vv~--s~e~v~~~i~~ 94 (98)
.+++++.=...+++|++.|....+|. +...++.++++
T Consensus 20 ~~~i~~~~~~aL~~L~~~Gi~i~iaTGr~~~~v~~~~~~ 58 (160)
T 1l6r_A 20 DRLISTKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIF 58 (160)
T ss_dssp TSCBCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
T ss_conf 993599999999999977998999848860215899997
No 26
>>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} PDB: 2i54_A* 2i55_A* (A:1-88,A:193-246)
Probab=32.08 E-value=44 Score=16.11 Aligned_cols=40 Identities=13% Similarity=-0.117 Sum_probs=25.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEE--CCHHHHHHHHHHH
Q ss_conf 789886989999999999789869998--3989999999986
Q gi|254781194|r 56 TSRGRLSNAQKRVIATLLLYHQKVQVL--SSTEEVDGFLRML 95 (98)
Q Consensus 56 ~~~gkls~~Q~~~~~~l~~~G~~~~Vv--~s~e~v~~~i~~l 95 (98)
.+++++++.=+.++.++++.|....+| ++...+.+.++++
T Consensus 17 ~~~~~i~~~~~~~L~~l~~kGv~i~ivTGR~~~~i~e~l~~~ 58 (142)
T 3f9r_A 17 PPRLCQTDEMRALIKRARGAGFCVGTVGGSDFAKQVEQLGRD 58 (142)
T ss_dssp STTSCCCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHCTT
T ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 899978999999999998489999998899979878888885
No 27
>>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} (A:1-36,A:299-352)
Probab=31.69 E-value=23 Score=17.80 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=17.8
Q ss_pred CCCCCEEEEECCCC-EEEEEEECC
Q ss_conf 87662799915991-999997278
Q gi|254781194|r 35 RGCPDRLIITPNGA-HFWVEMKTS 57 (98)
Q Consensus 35 ~G~PDli~~~~~g~-~~fIEvK~~ 57 (98)
+|+||+-+..|.|. ++|+++..-
T Consensus 32 qg~p~v~~~~P~GGfflWv~lp~~ 55 (90)
T 1v2d_A 32 QGFPSLRVYVPEGTYFLMAELPGW 55 (90)
T ss_dssp CCSCSCCEECCSBSSEEEEECTTC
T ss_pred CCCCCCCCCCCCCCEEEEEECCCH
T ss_conf 889995430798326999968933
No 28
>>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} (A:124-213,A:401-428)
Probab=30.66 E-value=42 Score=16.24 Aligned_cols=37 Identities=11% Similarity=0.272 Sum_probs=27.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHHH
Q ss_conf 89886989999999999789869998---39899999999862
Q gi|254781194|r 57 SRGRLSNAQKRVIATLLLYHQKVQVL---SSTEEVDGFLRMLE 96 (98)
Q Consensus 57 ~~gkls~~Q~~~~~~l~~~G~~~~Vv---~s~e~v~~~i~~l~ 96 (98)
|.|..|+.|+. ++...|..+.++ -++||+...++++.
T Consensus 35 P~g~vS~~k~~---qm~~~GanV~vi~V~G~fDDa~~~a~~l~ 74 (118)
T 1vb3_A 35 PRGKISPLQEK---LFCTLGGNIETVAIDGDFDACQALVKQAF 74 (118)
T ss_dssp ETTCSCHHHHH---HHHSCCTTEEEEEEESCHHHHHHHHHHGG
T ss_pred CCCCCCHHHHH---HHHHCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 57764078999---98752677438815898778999999886
No 29
>>2owo_A DNA ligase; protein/DNA complex, ligase/DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli K12} (A:80-116,A:237-317)
Probab=30.20 E-value=47 Score=15.92 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=33.8
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHCCCEE----EEECCHHHHHHHHHHHH
Q ss_conf 9999972789886989999999999789869----99839899999999862
Q gi|254781194|r 49 HFWVEMKTSRGRLSNAQKRVIATLLLYHQKV----QVLSSTEEVDGFLRMLE 96 (98)
Q Consensus 49 ~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~----~Vv~s~e~v~~~i~~l~ 96 (98)
-+..|+|-. .|...++.|+.+|+++ .+|.+.++|.+.++.+.
T Consensus 30 ~~~~E~Ki~------t~~e~l~~L~~~GF~v~~~~~~~~~~~ei~~~~~~~~ 75 (118)
T 2owo_A 30 TWCCELKLD------THLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVE 75 (118)
T ss_dssp CEEEEEEES------BHHHHHHHHHHHTCCCCTTCEEESSHHHHHHHHHHHH
T ss_pred EEEEEEECC------HHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 389986040------2566665542115420222100121001023454588
No 30
>>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis} (A:90-125,A:247-328)
Probab=30.03 E-value=17 Score=18.54 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=33.8
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHCCCEEE----EECCHHHHHHHHHHHH
Q ss_conf 99999727898869899999999997898699----9839899999999862
Q gi|254781194|r 49 HFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQ----VLSSTEEVDGFLRMLE 96 (98)
Q Consensus 49 ~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~~----Vv~s~e~v~~~i~~l~ 96 (98)
-+.+|.|- ...|...++.|+..|+++- +|.+.+++.++++++.
T Consensus 28 ~~~~E~K~-----D~tq~e~L~~L~~~GF~v~~~~~~~~~~~ei~~~i~~~~ 74 (118)
T 1zau_A 28 HYLCELKI-----DATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWG 74 (118)
T ss_dssp CEEEEEEE-----CSBHHHHHHHHHTTTCCCCCCCCCBCHHHHHHHHHHHTT
T ss_pred CCCEEEEE-----CHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 22202444-----500699999999708766877388489999999999999
No 31
>>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron reduction, phosphate complex; HET: SRM; 1.60A {Escherichia coli} (A:1-74,A:272-351)
Probab=28.33 E-value=31 Score=17.01 Aligned_cols=85 Identities=8% Similarity=0.061 Sum_probs=50.0
Q ss_pred HHHHHHHHHCCC-EEEEEECCC--------------------CCCCCC---EEEEECC-CCEEEEEEECCCCCC----CH
Q ss_conf 999999997898-899971489--------------------887662---7999159-919999972789886----98
Q gi|254781194|r 13 KRLVKGSKKLDC-LVFKTQFIN--------------------QRGCPD---RLIITPN-GAHFWVEMKTSRGRL----SN 63 (98)
Q Consensus 13 ~~i~~~~k~~g~-~~~k~~~~g--------------------~~G~PD---li~~~~~-g~~~fIEvK~~~gkl----s~ 63 (98)
+.+-+-++++|. -..++++-+ ..|++- .+.+++. ...++|=++.|+|++ ++
T Consensus 24 ~~i~~ia~~yg~~G~~~lTtRq~iql~gi~~~~~~~i~~~L~~~Gl~~~gt~~G~~~q~~g~~~v~~~i~~G~i~~~~ta 103 (154)
T 1aop_A 24 QAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATRIGWVKGIDDNWHLTLFIENGRILDYPAR 103 (154)
T ss_dssp HHHHHHHHHHBSSCCEEECTTSCEEECCBC-----CHHHHHHHTTCCCC--CCEEEECSTTEEEEEECCGGGEECEETTE
T ss_pred HHHHHHHHHHCCCCEEEEECCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCH
T ss_conf 99999999838998599837704584788888999999999986998533512421122456427899615776775521
Q ss_pred HHHHHHHHHHH-CCCEEEEEC---------CHHHHHHHHHHHHC
Q ss_conf 99999999997-898699983---------98999999998623
Q gi|254781194|r 64 AQKRVIATLLL-YHQKVQVLS---------STEEVDGFLRMLEC 97 (98)
Q Consensus 64 ~Q~~~~~~l~~-~G~~~~Vv~---------s~e~v~~~i~~l~~ 97 (98)
.|...+..+.+ .+..+.+.- ..+++.+++++|+.
T Consensus 104 ~ql~~ia~ia~~y~g~~~lT~rQ~i~l~~i~~~~~~~i~~~L~~ 147 (154)
T 1aop_A 104 PLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKE 147 (154)
T ss_dssp EHHHHHHHHHHHCSSEEEECTTSCEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCEEECCCCHHHHHHHHHHHH
T ss_conf 38999999987429819986534711014651011899999986
No 32
>>2noc_A Putative periplasmic protein; GFT STR106, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella choleraesuis} (A:)
Probab=28.15 E-value=52 Score=15.71 Aligned_cols=32 Identities=13% Similarity=0.024 Sum_probs=27.3
Q ss_pred HHCCHHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 12059999999999999789889997148988
Q gi|254781194|r 4 DYLSEAKLEKRLVKGSKKLDCLVFKTQFINQR 35 (98)
Q Consensus 4 ~~m~E~~ie~~i~~~~k~~g~~~~k~~~~g~~ 35 (98)
...+-.+++..|-+..+..|..+|.+++.+..
T Consensus 47 ~~~s~~d~~~~la~kAd~~GA~yy~Iis~~~~ 78 (99)
T 2noc_A 47 GEMSPLDAREDLIKKADEKGADVVVLTSGQTE 78 (99)
T ss_dssp SCCCHHHHHHHHHHHHHHTCCSEEECCSCCSS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 98996999999999999849988999961899
No 33
>>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} (A:)
Probab=26.91 E-value=23 Score=17.76 Aligned_cols=59 Identities=10% Similarity=-0.016 Sum_probs=35.2
Q ss_pred CCCCCCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
Q ss_conf 898876627999159919999972789886989999999999789869998398999999998
Q gi|254781194|r 32 INQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRM 94 (98)
Q Consensus 32 ~g~~G~PDli~~~~~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~~Vv~s~e~v~~~i~~ 94 (98)
.|-.|+|-++++.++|...... +|.+......+...+........-..+.+++..++.+
T Consensus 106 ~~v~~~Pt~~~~~~~g~~~~~~----~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~ 164 (167)
T 1z6n_A 106 LERIAIPLVLVLDEEFNLLGRF----VERPQAVLDGGPQALAAYKAGDYLEHAIGDVLAIIEG 164 (167)
T ss_dssp CSSCCSSEEEEECTTCCEEEEE----ESSCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHCCCCCCEEECCCCCCEEEEE----EHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 5212432034326775044222----0034898861002477654140118999999998623
No 34
>>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolase, structural genomics; HET: MSE; 2.10A {Clostridium difficile 630} (A:1-84,A:199-274)
Probab=25.94 E-value=57 Score=15.47 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=20.1
Q ss_pred HHHHHHHHHCCCEEEEEECCCC---------CCCCCEEEEECCCCEEE
Q ss_conf 9999999978988999714898---------87662799915991999
Q gi|254781194|r 13 KRLVKGSKKLDCLVFKTQFINQ---------RGCPDRLIITPNGAHFW 51 (98)
Q Consensus 13 ~~i~~~~k~~g~~~~k~~~~g~---------~G~PDli~~~~~g~~~f 51 (98)
....+.+++.|..+.=.+.-.. -|+++++. . +|...+
T Consensus 28 ~~~L~~L~~~Gi~i~i~Tgr~~~~~~~~~~~lg~~~~i~-~-nGa~i~ 73 (160)
T 3fzq_A 28 KHAIRLCQKNHCSVVICTGRSXGTIQDDVLSLGVDGYIA-G-GGNYIQ 73 (160)
T ss_dssp HHHHHHHHHTTCEEEEECSSCTTTSCHHHHTTCCSEEEE-T-TTTEEE
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEE-C-CCEEEE
T ss_conf 999999986899899989999899999999707442342-3-854886
No 35
>>1vsr_A Protein (VSR endonuclease); DNA repair, mismatch recognition, hydrolase; 1.80A {Escherichia coli K12} (A:)
Probab=25.65 E-value=57 Score=15.44 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECC--CC------C---------------CCHHH
Q ss_conf 9999999999997898899971489887662799915991999997278--98------8---------------69899
Q gi|254781194|r 9 AKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTS--RG------R---------------LSNAQ 65 (98)
Q Consensus 9 ~~ie~~i~~~~k~~g~~~~k~~~~g~~G~PDli~~~~~g~~~fIEvK~~--~g------k---------------ls~~Q 65 (98)
|..|+.+...+...|-.+..-...+ ++.+|+. + ++ .-+.||+=.. -+ + ....=
T Consensus 2 S~~E~~l~~~L~~~G~~~~~~~~~~-~~~~D~~-~-~~-~kl~IE~DG~~~h~~~~~~~~~~~~~~~~~~~~~~~~~erD 77 (136)
T 1vsr_A 2 TAIEKRLASLLTGQGLAFRVQDASL-PGRPDFV-V-DE-YRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERD 77 (136)
T ss_dssp -CCCHHHHHHHHHTTCCCEESCTTS-TTCCSEE-E-GG-GTEEEEEECTTTTTCSSTTCCCCSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCEEEECCCCC-CCCCCEE-E-CC-CCEEEEEECHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 7599999999998899899788889-9987887-5-47-75799970421034884236899841877566775558889
Q ss_pred HHHHHHHHHCCCEEEEECCHH
Q ss_conf 999999997898699983989
Q gi|254781194|r 66 KRVIATLLLYHQKVQVLSSTE 86 (98)
Q Consensus 66 ~~~~~~l~~~G~~~~Vv~s~e 86 (98)
+.....|+.+|+.+.-+++.+
T Consensus 78 ~~r~~~L~~~GW~Vlr~~~~~ 98 (136)
T 1vsr_A 78 RRDISRLQELGWRVLIVWECA 98 (136)
T ss_dssp HHHHHHHHHTTCEEEEEEHHH
T ss_pred HHHHHHHHHCCCEEEEEECCC
T ss_conf 999999998889899996783
No 36
>>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T (T:)
Probab=24.77 E-value=59 Score=15.36 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 98999999999978986999839899999999862
Q gi|254781194|r 62 SNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96 (98)
Q Consensus 62 s~~Q~~~~~~l~~~G~~~~Vv~s~e~v~~~i~~l~ 96 (98)
+..|...+.+.-+.+..+--..+.++|++++++++
T Consensus 15 T~EQ~~RL~q~L~~~~~~~~~~~~~Ev~EIv~di~ 49 (95)
T 2c5k_T 15 TKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVE 49 (95)
T ss_dssp HHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999986035775346899999999999
No 37
>>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} PDB: 3jsn_A* (A:80-114,A:228-318)
Probab=24.17 E-value=61 Score=15.27 Aligned_cols=46 Identities=11% Similarity=0.176 Sum_probs=35.2
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHCCCEE----EEECCHHHHHHHHHHHH
Q ss_conf 19999972789886989999999999789869----99839899999999862
Q gi|254781194|r 48 AHFWVEMKTSRGRLSNAQKRVIATLLLYHQKV----QVLSSTEEVDGFLRMLE 96 (98)
Q Consensus 48 ~~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~----~Vv~s~e~v~~~i~~l~ 96 (98)
-.+.+|+|--+ -..|...++.|+..|+++ .+|.+.+++.+.++.+.
T Consensus 26 ~~~~~E~K~D~---~~t~~e~l~~Lk~~GF~v~~~~~~~~~~~ei~~~i~~~~ 75 (126)
T 3jsl_A 26 VEYMCELKIDN---ARSQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWT 75 (126)
T ss_dssp CCEEEEEEECC---CSBHHHHHHHHHHHTCCCCTTCEEESSHHHHHHHHHHHH
T ss_pred CEEEEEEECCC---CCHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 11898860265---211788999998627762445389799999999999999
No 38
>>3hr6_A SPAA, putative surface-anchored fimbrial subunit; multiple IG-like domains, cell WALL, peptidoglycan-anchor, structural protein; 1.60A {Corynebacterium diphtheriae} PDB: 3htl_X* (A:290-436)
Probab=23.18 E-value=56 Score=15.49 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=14.4
Q ss_pred CCCCEEEEEEECCCCCC
Q ss_conf 59919999972789886
Q gi|254781194|r 45 PNGAHFWVEMKTSRGRL 61 (98)
Q Consensus 45 ~~g~~~fIEvK~~~gkl 61 (98)
+.|.+.+.|+|+|.|-.
T Consensus 99 ~~G~Y~l~E~kAP~GY~ 115 (147)
T 3hr6_A 99 KGTEFCLVETATASGYE 115 (147)
T ss_dssp SCSEEEEEEEECCTTCB
T ss_pred CCCEEEEEEEECCCCCC
T ss_conf 98619999966899959
No 39
>>3hr6_A SPAA, putative surface-anchored fimbrial subunit; multiple IG-like domains, cell WALL, peptidoglycan-anchor, structural protein; 1.60A {Corynebacterium diphtheriae} PDB: 3htl_X* (A:1-145)
Probab=22.07 E-value=43 Score=16.18 Aligned_cols=28 Identities=7% Similarity=-0.107 Sum_probs=18.9
Q ss_pred CCCCCCCCEEEEECCCCEEEEEEECCCCC
Q ss_conf 89887662799915991999997278988
Q gi|254781194|r 32 INQRGCPDRLIITPNGAHFWVEMKTSRGR 60 (98)
Q Consensus 32 ~g~~G~PDli~~~~~g~~~fIEvK~~~gk 60 (98)
.+..|.--.-- ++.|.++++|.|+|.|-
T Consensus 83 Td~~G~~~~~~-L~~G~Y~~~Etkap~gy 110 (145)
T 3hr6_A 83 KTEGGVAKFDN-LTPALYLVVQELNGAEA 110 (145)
T ss_dssp ECBTTBEEEEE-ECSEEEEEEECSCSSSC
T ss_pred ECCCCEEEECC-CCCEEEEEEEECCCCCC
T ss_conf 76886699889-88576899995489874
No 40
>>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, monomer, lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} (A:121-241,A:478-514)
Probab=21.24 E-value=70 Score=14.92 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=25.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHHH
Q ss_conf 89886989999999999789869998-39899999999862
Q gi|254781194|r 57 SRGRLSNAQKRVIATLLLYHQKVQVL-SSTEEVDGFLRMLE 96 (98)
Q Consensus 57 ~~gkls~~Q~~~~~~l~~~G~~~~Vv-~s~e~v~~~i~~l~ 96 (98)
|.++.++.|...+......+..+..+ -++||+.+..+++.
T Consensus 65 P~~~vs~~k~~qi~~~gaenv~Vv~V~Gs~Dda~~~a~~l~ 105 (158)
T 1kl7_A 65 PTGRISPIQEEQXTTVPDENVQTLSVTGTFDNCQDIVKAIF 105 (158)
T ss_dssp ETTSSCHHHHHHHHHCCCTTEEEEEESSCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHEEECCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 68787502366621407898799872699688759999985
Done!