HHSEARCH alignment of GI: 254781194 and SCOP domain: d1gefa_

Alignment
>d1gefa_ c.52.1.18 (A:) Archaeal Holliday junction resolvase Hjc {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=96.04  E-value=0.0075  Score=35.94  Aligned_cols=73  Identities=12%  Similarity=0.100  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECCCCC---CCHHHHHHHHHHH-HCCCEEEEEC
Q ss_conf             99999999999997898899971489887662799915991999997278988---6989999999999-7898699983
Q gi|254781194|r    8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR---LSNAQKRVIATLL-LYHQKVQVLS   83 (98)
Q Consensus         8 E~~ie~~i~~~~k~~g~~~~k~~~~g~~G~PDli~~~~~g~~~fIEvK~~~gk---ls~~Q~~~~~~l~-~~G~~~~Vv~   83 (98)
                      =+..|+.+++.++..|+.+...  ++ +|-||++... ++..+.||||+-...   .++.|....-... ..|....+++
T Consensus         5 G~~~ERel~~~l~~~G~~~~R~--~~-sg~~D~~a~~-~~~~~~IEvK~~~~~~~~~~~~~~eql~~~a~~~g~~P~la~   80 (120)
T d1gefa_           5 GAQAERELIKLLEKHGFAVVRS--AG-SKKVDLVAGN-GKKYLCIEVKVTKKDHLYVGKRDMGRLIEFSRRFGGIPVLAV   80 (120)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEB--GG-GSSCSEEEEC-SSCEEEEEEEEESSSCEEECHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCEEEC--CC-CCCCCCCCCC-CCCEEEEECCCCCCCCEEECHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             4399999999998679769998--78-7788721378-883699983771046524299999999999985799369999


Q ss_pred             C
Q ss_conf             9
Q gi|254781194|r   84 S   84 (98)
Q Consensus        84 s   84 (98)
                      -
T Consensus        81 K   81 (120)
T d1gefa_          81 K   81 (120)
T ss_dssp             E
T ss_pred             E
T ss_conf             9


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: Restriction endonuclease-like
family: Hjc-like
domain: Archaeal Holliday junction resolvase Hjc
species: Archaeon Pyrococcus furiosus [TaxId: 2261]