HHSEARCH alignment of GI: 254781194 and SCOP domain: d1y1oa_

Alignment
>d1y1oa_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related factor A (PrfA) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=94.00  E-value=0.22  Score=27.31  Aligned_cols=77  Identities=13%  Similarity=0.007  Sum_probs=60.3

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEEEECC---------C------------CCCCCCEEEEECCCCEEEEEEECC-C------
Q ss_conf             59999999999999789889997148---------9------------887662799915991999997278-9------
Q gi|254781194|r    7 SEAKLEKRLVKGSKKLDCLVFKTQFI---------N------------QRGCPDRLIITPNGAHFWVEMKTS-R------   58 (98)
Q Consensus         7 ~E~~ie~~i~~~~k~~g~~~~k~~~~---------g------------~~G~PDli~~~~~g~~~fIEvK~~-~------   58 (98)
                      .|..|.....-+..+.-+.+.|...|         .            ++.-||.+.++ .|+++..|.|.- +      
T Consensus         3 lE~~In~tn~~Y~~~~~A~I~K~ptPi~~vkvd~~~r~~a~i~~ayf~~kSt~DY~Gvy-~G~~I~FEAKeT~~ktsFpl   81 (168)
T d1y1oa_           3 LEDDLNATNEYYRERGIAVIHKKPTPVQIVRVDYPKRSAAVITEAYFRQASTTDYNGVY-RGKYIDFEAKETKNKTAFPL   81 (168)
T ss_dssp             HHHHHHHHHHHHHHTTSCEEEECCCCEEEEEEECCSSSCCEEEEEEECCCSSCSEEEEE-TTEEEEEEEEEECCSSEEEG
T ss_pred             HHHHHHHHHHHHHHCCEEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEE-CCEEEEEEEEECCCCCEECH
T ss_conf             79999999999997797999970798389961577665644677796467988755675-56589999630368870453


Q ss_pred             CCCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             88698999999999978986999839
Q gi|254781194|r   59 GRLSNAQKRVIATLLLYHQKVQVLSS   84 (98)
Q Consensus        59 gkls~~Q~~~~~~l~~~G~~~~Vv~s   84 (98)
                      ...+++|...++++...|+.++++=.
T Consensus        82 ~ni~~HQi~~L~~~~~~gGI~F~iI~  107 (168)
T d1y1oa_          82 KNFHAHQIRHMEQVVAHGGICFAILR  107 (168)
T ss_dssp             GGSCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             30779999999999978997999999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: Restriction endonuclease-like
family: RecU-like
domain: Recombination protein U (RecU)/PBP related factor A (PrfA)
species: Bacillus stearothermophilus [TaxId: 1422]