BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781194|ref|YP_003065607.1| hypothetical protein
CLIBASIA_05505 [Candidatus Liberibacter asiaticus str. psy62]
(98 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781194|ref|YP_003065607.1| hypothetical protein CLIBASIA_05505 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040871|gb|ACT57667.1| hypothetical protein CLIBASIA_05505 [Candidatus Liberibacter
asiaticus str. psy62]
gi|317120756|gb|ADV02577.1| endonuclease [Candidatus Liberibacter asiaticus]
Length = 98
Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR 60
MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR
Sbjct: 1 MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR 60
Query: 61 LSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLECY 98
LSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLECY
Sbjct: 61 LSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLECY 98
>gi|255957562|dbj|BAH96623.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957567|dbj|BAH96627.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957572|dbj|BAH96631.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957577|dbj|BAH96635.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957582|dbj|BAH96639.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957587|dbj|BAH96643.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957597|dbj|BAH96651.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957607|dbj|BAH96659.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
Length = 103
Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 64/93 (68%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y +E +EKRLV G++KLDC V K F+ +RGCPDRLIITPNG +W+E+K GRLS+
Sbjct: 8 YQTEKDVEKRLVTGAEKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQ 67
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
Q I LL Q+V+VL S EEVD FL L C
Sbjct: 68 QMSEIEELLRRGQRVKVLVSMEEVDNFLEELAC 100
>gi|255957617|dbj|BAH96667.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957627|dbj|BAH96675.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
Length = 103
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 63/93 (67%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y +E +EKRLV G+KKLDC V K F+ +RGCPDRLIITPNG +W+E+K GRLS+
Sbjct: 8 YQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQ 67
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
Q I L Q+V+VL S EEVD FL L C
Sbjct: 68 QMSEIEELRRRGQRVKVLVSMEEVDNFLEELAC 100
>gi|254780128|ref|YP_003064541.1| VRR-NUC domain-containing protein [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039805|gb|ACT56601.1| VRR-NUC domain-containing protein [Candidatus Liberibacter
asiaticus str. psy62]
gi|317120699|gb|ADV02522.1| endonuclease [Liberibacter phage SC1]
gi|317120843|gb|ADV02664.1| endonuclease [Liberibacter phage SC1]
Length = 103
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 63/93 (67%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y +E +EKRLV G+KKLDC V K F+ +RGCPDRLIITPNG +W+E+K GRLS+
Sbjct: 8 YQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQ 67
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
Q I L Q+V+VL S EEVD FL L C
Sbjct: 68 QMSEIEELRRRGQRVKVLVSMEEVDNFLEELAC 100
>gi|255957602|dbj|BAH96655.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957632|dbj|BAH96679.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957637|dbj|BAH96683.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957642|dbj|BAH96687.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957647|dbj|BAH96691.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957677|dbj|BAH96715.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957682|dbj|BAH96719.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957687|dbj|BAH96723.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
Length = 103
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 63/93 (67%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y +E +EKRLV G+KKLDC V K F+ +RGCPDRLIITPNG +W+E+K GRLS+
Sbjct: 8 YQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQ 67
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
Q I L Q+V+VL S EEVD FL L C
Sbjct: 68 QMSEIEELRRRGQRVKVLISIEEVDNFLEELAC 100
>gi|255957612|dbj|BAH96663.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
Length = 103
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 63/93 (67%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y +E +EKRLV G+KKLDC V K F+ +RGCPDRLIITPNG +W+E+K GRLS+
Sbjct: 8 YQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQ 67
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
Q I L Q+V+VL S EEVD FL L C
Sbjct: 68 QMSEIEELRRRGQRVKVLISMEEVDNFLEELAC 100
>gi|255957557|dbj|BAH96619.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|317120742|gb|ADV02564.1| endonuclease [Liberibacter phage SC2]
gi|317120803|gb|ADV02624.1| endonuclease [Liberibacter phage SC2]
Length = 103
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 63/93 (67%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y +E +EKRLV G+KKLDC V K F+ +RGCPDRLIITPNG +W+E+K GRLS+
Sbjct: 8 YQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQ 67
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
Q I L Q+V+VL S EEVD FL L C
Sbjct: 68 QMSEIEELRRRGQRVKVLISMEEVDNFLEELAC 100
>gi|255957592|dbj|BAH96647.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
Length = 103
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 63/93 (67%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y +E +EKRLV G+KKLDC V K F+ +RGCPDRLIITPNG +W+E+K GRLS+
Sbjct: 8 YQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGRLWWIEVKKPTGRLSHQ 67
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
Q I L Q+V+VL S EEVD FL L C
Sbjct: 68 QMSEIEELRRRGQRVKVLVSMEEVDNFLEELAC 100
>gi|315121968|ref|YP_004062457.1| VRR-NUC domain-containing protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|315122936|ref|YP_004063425.1| VRR-NUC domain-containing protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495370|gb|ADR51969.1| VRR-NUC domain-containing protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496338|gb|ADR52937.1| VRR-NUC domain-containing protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 101
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 64/91 (70%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
SE ++EKRLVKG ++LDC V K F++ RGCPDRLIITP G +W+E+K GRLS QK
Sbjct: 9 SEHEIEKRLVKGVQQLDCWVRKASFVSHRGCPDRLIITPQGRLWWIEVKQPSGRLSPQQK 68
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
I LL Q+V+VL S EEVD FL+ L C
Sbjct: 69 IEIEELLRRGQRVKVLFSAEEVDNFLKELAC 99
>gi|255957662|dbj|BAH96703.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957667|dbj|BAH96707.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
Length = 103
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 63/93 (67%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y +E +EKRLV G++KLDC V K F+ +RGCPDRLIITPNG +W+E+K GRLS+
Sbjct: 8 YQTEKDVEKRLVTGAEKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQ 67
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
Q I L Q+V+VL S EEVD FL L C
Sbjct: 68 QMSEIEELRRRGQRVKVLVSIEEVDNFLEELAC 100
>gi|255957622|dbj|BAH96671.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957652|dbj|BAH96695.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957657|dbj|BAH96699.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957672|dbj|BAH96711.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
Length = 103
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 63/93 (67%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y +E +EKRLV G++KLDC V K F+ +RGCPDRLIITPNG +W+E+K GRLS+
Sbjct: 8 YQTEKDVEKRLVTGAEKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQ 67
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
Q I L Q+V+VL S EEVD FL L C
Sbjct: 68 QMSEIEELRRRGQRVKVLVSMEEVDNFLEELAC 100
>gi|320140664|gb|EFW32518.1| VRR-NUC domain protein [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320142764|gb|EFW34567.1| VRR-NUC domain protein [Staphylococcus aureus subsp. aureus
MRSA177]
Length = 116
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%)
Query: 1 MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR 60
++ +Y+ E+ LEK LVK KL+ L K RG PDR+II P G ++VEMK +G+
Sbjct: 16 IQGEYMKESTLEKYLVKEISKLNGLCLKWVAPGTRGVPDRIIIMPEGKTYFVEMKQEKGK 75
Query: 61 LSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
L QK V KV VL + E+V+ F+RM+
Sbjct: 76 LHPLQKYVHRQFENRDHKVYVLWNKEQVNTFIRMV 110
>gi|87161853|ref|YP_494106.1| hypothetical protein SAUSA300_1409 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|161509686|ref|YP_001575345.1| hypothetical protein USA300HOU_1457 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|294848485|ref|ZP_06789231.1| hypothetical protein SKAG_00548 [Staphylococcus aureus A9754]
gi|300911908|ref|ZP_07129351.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus TCH70]
gi|87127827|gb|ABD22341.1| conserved hypothetical phage protein [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|160368495|gb|ABX29466.1| hypothetical bacteriophage protein [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|294824511|gb|EFG40934.1| hypothetical protein SKAG_00548 [Staphylococcus aureus A9754]
gi|300886154|gb|EFK81356.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus TCH70]
gi|315197729|gb|EFU28063.1| hypothetical bacteriophage protein [Staphylococcus aureus subsp.
aureus CGS01]
Length = 96
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 51/90 (56%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ LEK LVK KL+ L K RG PDR+II P G ++VEMK +G+L Q
Sbjct: 1 MKESTLEKYLVKEISKLNGLCLKWVAPGTRGVPDRIIIMPEGKTYFVEMKQEKGKLHPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
K V KV VL + E+V+ F+RM+
Sbjct: 61 KYVHRQFENRDHKVYVLWNKEQVNTFIRMV 90
>gi|29028642|ref|NP_803331.1| phi related protein [Staphylococcus phage phi 12]
gi|66395698|ref|YP_240069.1| ORF044 [Staphylococcus phage 47]
gi|88195256|ref|YP_500059.1| phi related protein [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|148267488|ref|YP_001246431.1| VRR-NUC [Staphylococcus aureus subsp. aureus JH9]
gi|150393542|ref|YP_001316217.1| VRR-NUC domain-containing protein [Staphylococcus aureus subsp.
aureus JH1]
gi|253315480|ref|ZP_04838693.1| VRR-NUC domain-containing protein [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|258420305|ref|ZP_05683252.1| VRR-NUC domain-containing protein [Staphylococcus aureus A9719]
gi|258427144|ref|ZP_05688066.1| VRR-NUC domain-containing protein [Staphylococcus aureus A9299]
gi|258448844|ref|ZP_05696954.1| VRR-NUC domain-containing protein [Staphylococcus aureus A6224]
gi|282905865|ref|ZP_06313720.1| phi family protein [Staphylococcus aureus subsp. aureus Btn1260]
gi|282919230|ref|ZP_06326965.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus C427]
gi|282927342|ref|ZP_06334960.1| phi protein [Staphylococcus aureus A10102]
gi|284024516|ref|ZP_06378914.1| VRR-NUC domain-containing protein [Staphylococcus aureus subsp.
aureus 132]
gi|295407566|ref|ZP_06817359.1| phage protein [Staphylococcus aureus A8819]
gi|296276323|ref|ZP_06858830.1| VRR-NUC domain-containing protein [Staphylococcus aureus subsp.
aureus MR1]
gi|297207822|ref|ZP_06924256.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297246596|ref|ZP_06930429.1| phi like protein [Staphylococcus aureus A8796]
gi|18920566|gb|AAL82306.1| phi related protein [Staphylococcus phage phi 12]
gi|62636122|gb|AAX91233.1| ORF044 [Staphylococcus phage 47]
gi|87202814|gb|ABD30624.1| phi related protein [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|147740557|gb|ABQ48855.1| VRR-NUC [Staphylococcus aureus subsp. aureus JH9]
gi|149945994|gb|ABR51930.1| VRR-NUC domain protein [Staphylococcus aureus subsp. aureus JH1]
gi|257843730|gb|EEV68132.1| VRR-NUC domain-containing protein [Staphylococcus aureus A9719]
gi|257849922|gb|EEV73881.1| VRR-NUC domain-containing protein [Staphylococcus aureus A9299]
gi|257857881|gb|EEV80772.1| VRR-NUC domain-containing protein [Staphylococcus aureus A6224]
gi|282317040|gb|EFB47414.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus C427]
gi|282331157|gb|EFB60671.1| phi family protein [Staphylococcus aureus subsp. aureus Btn1260]
gi|282590666|gb|EFB95742.1| phi protein [Staphylococcus aureus A10102]
gi|283469595|emb|CAQ48806.1| phi related protein [Staphylococcus aureus subsp. aureus ST398]
gi|283470736|emb|CAQ49947.1| phi related protein [Staphylococcus aureus subsp. aureus ST398]
gi|294967585|gb|EFG43621.1| phage protein [Staphylococcus aureus A8819]
gi|296887538|gb|EFH26437.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297176554|gb|EFH35819.1| phi like protein [Staphylococcus aureus A8796]
gi|298693628|gb|ADI96850.1| hypothetical phage protein [Staphylococcus aureus subsp. aureus
ED133]
gi|302333126|gb|ADL23319.1| VRR-NUC domain [Staphylococcus aureus subsp. aureus JKD6159]
gi|312438076|gb|ADQ77147.1| phi phage protein [Staphylococcus aureus subsp. aureus TCH60]
gi|323438428|gb|EGA96183.1| hypothetical protein SAO11_2724 [Staphylococcus aureus O11]
gi|323441316|gb|EGA98981.1| hypothetical protein SAO46_2726 [Staphylococcus aureus O46]
gi|329729402|gb|EGG65807.1| VRR-NUC domain protein [Staphylococcus aureus subsp. aureus
21189]
gi|329730601|gb|EGG66986.1| VRR-NUC domain protein [Staphylococcus aureus subsp. aureus
21193]
Length = 96
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 51/90 (56%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ LEK LVK KL+ L K RG PDR+II P G ++VEMK +G+L Q
Sbjct: 1 MKESTLEKYLVKEITKLNGLCLKWVAPGTRGVPDRIIIMPEGKTYFVEMKQEKGKLHPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
K V KV VL + E+V+ F+RM+
Sbjct: 61 KYVHRQFENRDHKVYVLWNKEQVNTFIRMV 90
>gi|282911094|ref|ZP_06318896.1| gp33 [Staphylococcus aureus subsp. aureus WBG10049]
gi|282324789|gb|EFB55099.1| gp33 [Staphylococcus aureus subsp. aureus WBG10049]
Length = 96
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 50/90 (55%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ LEK LVK KL+ L K RG PDR+II P G ++VEMK +G+L Q
Sbjct: 1 MKESTLEKYLVKEITKLNGLCLKWVAPGTRGVPDRIIIMPEGKTYFVEMKQEKGKLHPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
K V V VL + E+VD F+RM+
Sbjct: 61 KYVHRQFENRDHTVYVLWNKEQVDEFIRMV 90
>gi|257428239|ref|ZP_05604637.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257432447|ref|ZP_05608810.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus E1410]
gi|257275080|gb|EEV06567.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257283326|gb|EEV13458.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus E1410]
Length = 96
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 50/90 (55%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ LEK LVK KL+ L K RG PDR+II P G F+VEMK +G+L Q
Sbjct: 1 MKESTLEKYLVKEITKLNGLCLKWVAPGTRGVPDRIIIMPEGKTFFVEMKQEKGKLHPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
K V V VL + E+V+ F+RM+
Sbjct: 61 KYVHRQFENRDHTVYVLWNKEQVNTFIRMV 90
>gi|156603989|ref|YP_001429935.1| hypothetical protein SPTP3102_gp40 [Staphylococcus phage tp310-2]
gi|154818075|gb|ABS87502.1| hypothetical protein [Staphylococcus phage tp310-2]
Length = 96
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 50/90 (55%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E LEK LVK KL+ L K RG PDR+II P G ++VEMK +G+L Q
Sbjct: 1 MKETTLEKYLVKEITKLNGLCLKWVAPGTRGVPDRIIIMPEGKTYFVEMKQEKGKLHPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
K V +V VL + E+V+ F+RM+
Sbjct: 61 KYVHRQFENRDHRVYVLWNKEQVNTFIRMV 90
>gi|66395557|ref|YP_239929.1| ORF053 [Staphylococcus phage 42E]
gi|215401141|ref|YP_002332396.1| hypothetical protein SauSIPLA35_gp33 [Staphylococcus phage
phiSauS-IPLA35]
gi|62636050|gb|AAX91161.1| ORF053 [Staphylococcus phage 42E]
gi|215260492|gb|ACJ64622.1| gp33 [Staphylococcus phage phiSauS-IPLA35]
Length = 96
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 50/90 (55%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ LEK LVK KL+ L K RG PDR+II P G ++VEMK +G+L Q
Sbjct: 1 MKESTLEKYLVKEITKLNGLCLKWVAPGTRGVPDRIIIMPEGKTYFVEMKQEKGKLHPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
K V V VL + E+V+ F+RM+
Sbjct: 61 KYVHRQFENRDHTVYVLWNKEQVNTFIRMV 90
>gi|49483701|ref|YP_040925.1| hypothetical protein SAR1524 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49485833|ref|YP_043054.1| hypothetical protein SAS0927 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|66395630|ref|YP_239996.1| ORF045 [Staphylococcus phage 3A]
gi|209363582|ref|YP_002268000.1| hypothetical protein phi2958PVL_gp30 [Staphylococcus phage
phi2958PVL]
gi|258445561|ref|ZP_05693743.1| gp33 [Staphylococcus aureus A6300]
gi|258455569|ref|ZP_05703526.1| conserved hypothetical protein [Staphylococcus aureus A5937]
gi|262052906|ref|ZP_06025089.1| hypothetical protein SA930_0247 [Staphylococcus aureus 930918-3]
gi|282921766|ref|ZP_06329483.1| conserved hypothetical protein [Staphylococcus aureus A9765]
gi|295428025|ref|ZP_06820657.1| predicted protein [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297591004|ref|ZP_06949642.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus MN8]
gi|49241830|emb|CAG40522.1| hypothetical phage protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49244276|emb|CAG42703.1| hypothetical phage protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|62635976|gb|AAX91087.1| ORF045 [Staphylococcus phage 3A]
gi|208973083|dbj|BAG74399.1| hypothetical protein [Staphylococcus phage phi2958PVL]
gi|257855608|gb|EEV78541.1| gp33 [Staphylococcus aureus A6300]
gi|257862257|gb|EEV85028.1| conserved hypothetical protein [Staphylococcus aureus A5937]
gi|259159213|gb|EEW44274.1| hypothetical protein SA930_0247 [Staphylococcus aureus 930918-3]
gi|282594028|gb|EFB99017.1| conserved hypothetical protein [Staphylococcus aureus A9765]
gi|295128383|gb|EFG58017.1| predicted protein [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297575890|gb|EFH94606.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus MN8]
gi|315128427|gb|EFT84435.1| hypothetical protein CGSSa03_13292 [Staphylococcus aureus subsp.
aureus CGS03]
Length = 96
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 50/90 (55%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ LEK LVK KL+ L K RG PDR+II P G ++VEMK +G+L Q
Sbjct: 1 MKESTLEKYLVKEITKLNGLCLKWVAPGTRGVPDRIIIMPEGKTYFVEMKQEKGKLHPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
K V V VL + E+V+ F+RM+
Sbjct: 61 KYVHRQFENRDHTVYVLWNKEQVNTFIRMV 90
>gi|312897718|ref|ZP_07757134.1| VRR-NUC domain protein [Megasphaera micronuciformis F0359]
gi|310621102|gb|EFQ04646.1| VRR-NUC domain protein [Megasphaera micronuciformis F0359]
Length = 111
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +EK+LV G KKL +K G PDR++I P+G+ ++E+KT++G+LS Q
Sbjct: 18 ERDIEKKLVAGVKKLGGRAYKFVSPGNIGVPDRIVIWPDGSIEFIELKTAKGQLSKTQAT 77
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFLRM 94
IA L V +L + V+ +L +
Sbjct: 78 QIARLQAMECNVHILYGMDAVNAYLNV 104
>gi|227872573|ref|ZP_03990909.1| VRR-NUC domain protein [Oribacterium sinus F0268]
gi|227841574|gb|EEJ51868.1| VRR-NUC domain protein [Oribacterium sinus F0268]
Length = 103
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 47/85 (55%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E K+EK +V+ L C +K N RG PDRL IT G F+ E+KT +GRLS+ Q+
Sbjct: 5 EKKVEKAMVRMLWNLGCESYKFVSPNCRGVPDRLFITEEGKVFFAELKTIKGRLSSLQEN 64
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFL 92
I L Q+V V+ E V F+
Sbjct: 65 QIKKLKALKQEVYVIYGMEGVRKFV 89
>gi|70726781|ref|YP_253695.1| hypothetical protein SH1780 [Staphylococcus haemolyticus
JCSC1435]
gi|68447505|dbj|BAE05089.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 92
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+K+E LV+ KKL L K RG PDR++I P G ++VEMK GR+ Q
Sbjct: 1 MRESKIESYLVREVKKLKGLCLKWVSPGTRGVPDRIVIMPKGKTYYVEMKQPNGRVDPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLR 93
+ + L +V L + E+V+ F++
Sbjct: 61 QYMHKQLTNRDHQVFTLWTKEQVNEFIK 88
>gi|66395482|ref|YP_239851.1| ORF037 [Staphylococcus phage 2638A]
gi|62635909|gb|AAX91020.1| ORF037 [Staphylococcus phage 2638A]
Length = 98
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ +EK LVK KK L K RG PDR++I P G ++VEMK +GR Q
Sbjct: 1 MRESNIEKYLVKEVKKKKGLCLKWVAPGTRGVPDRIVIMPKGKTYYVEMKQPKGRTDPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLR 93
K + L +V L ++VD F++
Sbjct: 61 KYMHKQLEDRGHQVFTLWDKKQVDEFIK 88
>gi|225405818|ref|ZP_03761007.1| hypothetical protein CLOSTASPAR_05039 [Clostridium asparagiforme
DSM 15981]
gi|225042658|gb|EEG52904.1| hypothetical protein CLOSTASPAR_05039 [Clostridium asparagiforme
DSM 15981]
Length = 96
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E++LV+G K+L FK G PDR++ P VE+KT G+LS Q
Sbjct: 1 MREKDIEQKLVQGVKRLGGRAFKWTSPGNDGVPDRIVFLPGRPPVLVELKTDTGKLSALQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
+ I L Q V+VL ++V FL EC
Sbjct: 61 RIQIGRLRDLGQDVRVLYGLDQVLEFLN--EC 90
>gi|266623805|ref|ZP_06116740.1| putative protein p44 [Clostridium hathewayi DSM 13479]
gi|288864377|gb|EFC96675.1| putative protein p44 [Clostridium hathewayi DSM 13479]
Length = 111
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +EK LV KKL +K G PDR++I P +VE+KT +GRLS Q+
Sbjct: 3 EKDIEKILVNEVKKLGGRAYKWVSPGNDGVPDRIVILPGLRPVFVELKTEKGRLSAIQRV 62
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
I L Q V VL +V FL EC
Sbjct: 63 QIERLKKMKQDVSVLYGEPQVRDFLE--EC 90
>gi|258646423|ref|ZP_05733892.1| putative protein p44 [Dialister invisus DSM 15470]
gi|260403826|gb|EEW97373.1| putative protein p44 [Dialister invisus DSM 15470]
Length = 105
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
SE EK LV KKL +K G PDR+II P G +VEMK+ G LS QK
Sbjct: 7 SERDAEKLLVSKIKKLGGRAYKFTSPGSAGVPDRIIILPGGYVEFVEMKSETGMLSVLQK 66
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFL 92
I+ L V+VL ++VD ++
Sbjct: 67 ICISHLRSLGCHVEVLYGAKDVDTYV 92
>gi|21283135|ref|NP_646223.1| hypothetical protein MW1406 [Staphylococcus aureus subsp. aureus
MW2]
gi|21204575|dbj|BAB95271.1| hypothetical protein [Staphylococcus aureus subsp. aureus MW2]
Length = 65
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 37 CPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
PDR+II P G ++VEMK +G+L QK V KV VL + E+V+ F+RM+
Sbjct: 1 MPDRIIIMPEGKTYFVEMKQEKGKLHPLQKYVHRQFENRDHKVYVLWNKEQVNTFIRMV 59
>gi|237738631|ref|ZP_04569112.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
gi|229424114|gb|EEO39161.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
Length = 102
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTS--RGRLSNA 64
SE ++E LVK K + L K G PDR++I P G ++VE+K R LS
Sbjct: 4 SEREIEAYLVKSIKNKNGLCMKWTSPGNAGVPDRIVIVPGGDVYFVELKAEGKREDLSPL 63
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFL 92
Q+ I L + +V++S +EVD F+
Sbjct: 64 QRNFINKLKNLNCDARVIASFKEVDEFI 91
>gi|41179403|ref|NP_958712.1| Bbp43 [Bordetella phage BPP-1]
gi|45569536|ref|NP_996605.1| hypothetical protein BMP-1p42 [Bordetella phage BMP-1]
gi|45580787|ref|NP_996653.1| hypothetical protein BIP-1p42 [Bordetella phage BIP-1]
gi|40950142|gb|AAR97708.1| Bbp43 [Bordetella phage BPP-1]
Length = 87
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ +EK LV+ +KL V K ++I + G PDRL++ P+ WVE+K + Q
Sbjct: 1 MRESDIEKYLVERVRKLGGEVRKVRWIGRNGAPDRLVMLPDRT-VWVELKAPGEKCRPHQ 59
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFL 92
R + Q+V V+ S E VD L
Sbjct: 60 IREHERMRRMGQRVAVVDSHEGVDEVL 86
>gi|253581728|ref|ZP_04858952.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
gi|251836077|gb|EES64614.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
Length = 97
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++EK L + KKL + +K G PDRL++ P G +VE+K G+ + Q
Sbjct: 1 MREKEIEKYLREEIKKLGGIAYKFTSPGNSGVPDRLVLLPCGVVAFVELKAPGGKTTAIQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
R IA + V ++ S +VD F++ ++
Sbjct: 61 DRQIARIQKLDFDVYIVDSKFKVDCFIQDMQ 91
>gi|168179445|ref|ZP_02614109.1| phage associated protein [Clostridium botulinum NCTC 2916]
gi|182669696|gb|EDT81672.1| phage associated protein [Clostridium botulinum NCTC 2916]
Length = 91
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E+ +EKRL K +KL K G PDR+++ P G +VE+K + QK
Sbjct: 3 ESSIEKRLKKEIEKLSGKALKFVSPGVSGVPDRIVLLPQGRIIFVELKAPGKKPRPIQKY 62
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFLR 93
I L +V+++ S E ++ F+R
Sbjct: 63 RIKELTALGFRVEIIDSIEGINNFIR 88
>gi|212499740|ref|YP_002308548.1| hypothetical protein APSE235 [Bacteriophage APSE-2]
gi|238898731|ref|YP_002924412.1| APSE-2 prophage; hypothetical protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|75906054|gb|ABA29400.1| conserved hypothetical protein [Bacteriophage APSE-2]
gi|211731709|gb|ACJ10197.1| conserved hypothetical protein [Bacteriophage APSE-2]
gi|211731854|gb|ACJ10153.1| conserved hypothetical protein [Bacteriophage APSE-4]
gi|229466490|gb|ACQ68264.1| APSE-2 prophage; conserved hypothetical protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 94
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +EK LV+ +K+ + +K +RG PDRL+ PNG +VE K + + Q
Sbjct: 4 IREDSIEKHLVREVQKIGGIAYKFVSPGRRGVPDRLVALPNGKIIFVECKAPGEKPTPYQ 63
Query: 66 KRVIATLLLYHQKVQVLSSTE 86
R A L +V VL S +
Sbjct: 64 LREHARLFALGHQVIVLDSQD 84
>gi|211731845|gb|ACJ10148.1| conserved hypothetical protein [Bacteriophage APSE-5]
Length = 93
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +EK LV+ +K+ + +K +RG PDRL+ PNG +VE K + + Q
Sbjct: 4 IREDSIEKHLVREVQKIGGIAYKFVSPGRRGVPDRLVALPNGKIIFVECKAPGEKPTPYQ 63
Query: 66 KRVIATLLLYHQKVQVLSSTE 86
R A L +V VL S +
Sbjct: 64 LREHARLFALGHQVIVLDSQD 84
>gi|284007834|emb|CBA73722.1| conserved hypothetical phage protein [Arsenophonus nasoniae]
Length = 93
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +EK LV+ +K+ + +K +RG PDRL+ PNG +VE K + + Q
Sbjct: 4 IREESIEKHLVREVQKIGGIAYKFVSPGRRGVPDRLVALPNGNIIFVECKAPGEKPTPYQ 63
Query: 66 KRVIATLLLYHQKVQVLSSTE 86
R A L +V VL S +
Sbjct: 64 LREHARLFALGHQVIVLDSQD 84
>gi|303239098|ref|ZP_07325628.1| VRR-NUC domain protein [Acetivibrio cellulolyticus CD2]
gi|302593436|gb|EFL63154.1| VRR-NUC domain protein [Acetivibrio cellulolyticus CD2]
Length = 138
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +LEK+L K + L K G PDR+++ PNG ++ E+K +L Q++
Sbjct: 49 EKELEKKLRTAVKAIGGLALKFVSPGMAGVPDRMVLLPNGRIYFSELKRHGEKLRPLQQK 108
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFLR 93
L + KV + S ++GFLR
Sbjct: 109 RKQQLEMLGFKVYCIDSASSLEGFLR 134
>gi|318064434|gb|ADV36448.1| gp36 [Edwardsiella phage eiAU]
gi|318064542|gb|ADV36500.1| gp36 [Edwardsiella phage eiDWF]
gi|318064646|gb|ADV36552.1| gp36 [Edwardsiella phage eiMSLS]
Length = 92
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 37/83 (44%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
E K++ L + K + LV K + +RGCPD I+ P G VE+K G Q
Sbjct: 3 PEGKVQAHLQRRFKAIGGLVRKISYEGRRGCPDLFIVLPGGVVVMVEVKKPGGTPEPHQV 62
Query: 67 RVIATLLLYHQKVQVLSSTEEVD 89
R I L V V+ S E D
Sbjct: 63 REIERLRQRGVPVYVIDSIEGAD 85
>gi|9633591|ref|NP_051005.1| hypothetical protein APSE-1_44 [Acyrthosiphon pisum bacteriophage
APSE-1]
gi|9910954|sp|Q9T1Q4|VP44_BPAPS RecName: Full=Putative nuclease p44
gi|6118039|gb|AAF03987.1|AF157835_44 P44 [Endosymbiont phage APSE-1]
Length = 93
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +EK LV +K+ + +K +RG PDRL+ PNG +VE K + + Q
Sbjct: 4 IREDSIEKHLVSEVRKIGGIAYKFVSPGRRGVPDRLVALPNGKIIFVECKAPGEKPTPYQ 63
Query: 66 KRVIATLLLYHQKVQVLSSTE 86
R A L +V VL S +
Sbjct: 64 LREHARLFALGHQVIVLDSQD 84
>gi|153940485|ref|YP_001391669.1| VRR-NUC domain-containing protein [Clostridium botulinum F str.
Langeland]
gi|152936381|gb|ABS41879.1| VRR-NUC domain protein [Clostridium botulinum F str. Langeland]
Length = 93
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+++EKRL K +KL K G PDR+++ P G +VE+K + Q
Sbjct: 1 MEESRIEKRLKKEIEKLGGKALKFVSPGVSGVPDRIVLLPEGRIIFVELKAPGKKPRPIQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFL 92
K I L +V+++ S E ++ F+
Sbjct: 61 KYRIKELRSLGFRVEIIDSIERINNFV 87
>gi|211731860|gb|ACJ10158.1| conserved hypothetical protein [Bacteriophage APSE-3]
Length = 93
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +EK LV +K+ + +K +RG PDRL+ PNG +VE K + + Q
Sbjct: 4 IREDSIEKHLVSEVQKIGGIAYKFVSPGRRGVPDRLVALPNGKIIFVECKAPGEKPTPYQ 63
Query: 66 KRVIATLLLYHQKVQVLSSTE 86
R A L +V VL S +
Sbjct: 64 LREHARLFALGHQVIVLDSQD 84
>gi|254975144|ref|ZP_05271616.1| VRR-NUC domain-containing protein [Clostridium difficile
QCD-66c26]
gi|255092534|ref|ZP_05322012.1| VRR-NUC domain-containing protein [Clostridium difficile CIP
107932]
gi|255306561|ref|ZP_05350732.1| VRR-NUC domain-containing protein [Clostridium difficile ATCC
43255]
gi|255314271|ref|ZP_05355854.1| VRR-NUC domain-containing protein [Clostridium difficile
QCD-76w55]
gi|255516951|ref|ZP_05384627.1| VRR-NUC domain-containing protein [Clostridium difficile
QCD-97b34]
gi|255650053|ref|ZP_05396955.1| VRR-NUC domain-containing protein [Clostridium difficile
QCD-37x79]
gi|306519588|ref|ZP_07405935.1| phage-like protein [Clostridium difficile QCD-32g58]
Length = 108
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E+K+EKRL K + L K + G PDR+++ P G +VE+K +L Q+
Sbjct: 3 ESKIEKRLKKEIELLGGKAMKFISPGEAGVPDRIVLLPEGHVIFVELKAPGKKLRKLQQY 62
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFLRMLECY 98
+ L KV+ +S+ +E+D F++ ++ +
Sbjct: 63 KMRELRELGFKVKCVSTLKEIDDFIKEVKGW 93
>gi|269120030|ref|YP_003308207.1| VRR-NUC domain protein [Sebaldella termitidis ATCC 33386]
gi|268613908|gb|ACZ08276.1| VRR-NUC domain protein [Sebaldella termitidis ATCC 33386]
Length = 110
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%)
Query: 1 MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR 60
M + L E +EK L KK+ + +K G PDRL++ P F+VE+K +
Sbjct: 1 MFKNELKEKDIEKYLRDEIKKVGGIAYKFVSPGNAGVPDRLVLLPGRWSFFVELKAPGKK 60
Query: 61 LSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLECY 98
Q R I + V ++ S ++VD ++M++ +
Sbjct: 61 TRAVQDRQIRKIRNLDFSVLIIDSKKQVDDLVKMIKHH 98
>gi|238018845|ref|ZP_04599271.1| hypothetical protein VEIDISOL_00705 [Veillonella dispar ATCC
17748]
gi|237864611|gb|EEP65901.1| hypothetical protein VEIDISOL_00705 [Veillonella dispar ATCC
17748]
Length = 110
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +E+ L KK+ C+ K G PDR+I+ P G +VE+K + G+L Q+
Sbjct: 2 EKDIERWLGNQLKKMGCIYMKFVSPGNDGVPDRIIVLPGGGVIFVELKDTNGKLMANQRV 61
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
I+ L V V++ + F+ +E
Sbjct: 62 QISRLRKQGALVFVVTGMPDAKLFVEDME 90
>gi|302873664|ref|YP_003842297.1| VRR-NUC domain-containing protein [Clostridium cellulovorans
743B]
gi|307686612|ref|ZP_07629058.1| VRR-NUC domain-containing protein [Clostridium cellulovorans
743B]
gi|302576521|gb|ADL50533.1| VRR-NUC domain-containing protein [Clostridium cellulovorans
743B]
Length = 92
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+K+EK L KK + K G PDRL++ PNG +VE+K + + Q
Sbjct: 1 MRESKIEKALTIELKKRGGMALKFVSPGMAGVPDRLVLIPNGEVIFVELKAPGKTMRHLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLR 93
+ + L +V V+ S VD F+R
Sbjct: 61 LKRKSQLENLGFRVYVIDSLGGVDSFVR 88
>gi|325478671|gb|EGC81782.1| VRR-NUC domain protein [Anaerococcus prevotii ACS-065-V-Col13]
Length = 93
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 37/82 (45%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E ++EK LV K L K + G PDR+I+ P G +VE K G QKR
Sbjct: 3 ENEIEKALVDKVKPHGGLCLKFTSPSMTGIPDRIILLPKGKIGFVETKRPGGEPRPIQKR 62
Query: 68 VIATLLLYHQKVQVLSSTEEVD 89
I KV VL S E +D
Sbjct: 63 RIRQFKNLGFKVYVLDSKENID 84
>gi|15837284|ref|NP_297972.1| hypothetical protein XF0682 [Xylella fastidiosa 9a5c]
gi|15838883|ref|NP_299571.1| hypothetical protein XF2292 [Xylella fastidiosa 9a5c]
gi|15839116|ref|NP_299804.1| hypothetical protein XF2526 [Xylella fastidiosa 9a5c]
gi|9105564|gb|AAF83492.1|AE003912_4 phage-related protein [Xylella fastidiosa 9a5c]
gi|9107456|gb|AAF85091.1|AE004041_3 phage-related protein [Xylella fastidiosa 9a5c]
gi|9107732|gb|AAF85324.1|AE004059_14 phage-related protein [Xylella fastidiosa 9a5c]
Length = 92
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +E+ LV + + K ++ + G PDR+ + PNG WVE+K + + Q R
Sbjct: 7 ERTIERYLVAQVRAKGGEIRKVKWGGRHGAPDRIAMLPNGRTLWVELKAPGKQCTPHQVR 66
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFL 92
A + Q V V+ S + VD L
Sbjct: 67 EHARMRRMGQHVVVVDSLKGVDEVL 91
>gi|304439203|ref|ZP_07399121.1| VRR-NUC domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372335|gb|EFM25923.1| VRR-NUC domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 93
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E ++EK LV K L K ++ G PDR+I+ P G +VE K G QK+
Sbjct: 3 ENEIEKALVDKVKLHGGLCLKFTSLSMTGIPDRIILLPKGKVGFVETKRPGGEPRPIQKK 62
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFLR 93
I KV VL S E +D ++
Sbjct: 63 RIRQFKNLGFKVYVLDSKENIDEIIK 88
>gi|170023448|ref|YP_001719953.1| VRR-NUC domain-containing protein [Yersinia pseudotuberculosis
YPIII]
gi|169749982|gb|ACA67500.1| VRR-NUC domain protein [Yersinia pseudotuberculosis YPIII]
Length = 89
Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y+ E +E LVK KK + +K +R PDRL++ P G +VE K + + A
Sbjct: 3 YIREDSIEAHLVKEVKKAGGIAYKFISPGRRSVPDRLVLLPGGNVIFVECKAPGEKPTAA 62
Query: 65 QKRVIATLLLYHQKVQVLS 83
Q R H+K++ L
Sbjct: 63 QLR-------EHEKIRALG 74
>gi|257088836|ref|ZP_05583197.1| predicted protein [Enterococcus faecalis CH188]
gi|256997648|gb|EEU84168.1| predicted protein [Enterococcus faecalis CH188]
Length = 132
Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 2 RTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRL 61
R D E +EK L++ K+ L +K RG PDR+I+ G F+VE+K G+
Sbjct: 24 RQDMQIENDIEKYLIRQIKRTGALCYKFTSPGTRGVPDRIILY-QGNVFFVELKRPGGKP 82
Query: 62 SNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
Q ++I V V+ S + VD + ++
Sbjct: 83 RKDQLKIIEKFKEQLIPVFVIDSKQGVDTLIYAMQ 117
>gi|227520160|ref|ZP_03950209.1| VRR-NUC domain protein [Enterococcus faecalis TX0104]
gi|227072405|gb|EEI10368.1| VRR-NUC domain protein [Enterococcus faecalis TX0104]
gi|315160594|gb|EFU04611.1| VRR-NUC domain protein [Enterococcus faecalis TX0645]
gi|315574063|gb|EFU86254.1| VRR-NUC domain protein [Enterococcus faecalis TX0309B]
gi|315579440|gb|EFU91631.1| VRR-NUC domain protein [Enterococcus faecalis TX0630]
gi|315582008|gb|EFU94199.1| VRR-NUC domain protein [Enterococcus faecalis TX0309A]
Length = 127
Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 2 RTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRL 61
R D E +EK L++ K+ L +K RG PDR+I+ G F+VE+K G+
Sbjct: 19 RQDMQIENDIEKYLIRQIKRTGALCYKFTSPGTRGVPDRIILY-QGNVFFVELKRPGGKP 77
Query: 62 SNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
Q ++I V V+ S + VD + ++
Sbjct: 78 RKDQLKIIEKFKEQLIPVFVIDSKQGVDTLIYAMQS 113
>gi|28198297|ref|NP_778611.1| hypothetical protein PD0380 [Xylella fastidiosa Temecula1]
gi|182680934|ref|YP_001829094.1| VRR-NUC domain-containing protein [Xylella fastidiosa M23]
gi|28056367|gb|AAO28260.1| phage-related protein [Xylella fastidiosa Temecula1]
gi|182631044|gb|ACB91820.1| VRR-NUC domain protein [Xylella fastidiosa M23]
gi|307579402|gb|ADN63371.1| VRR-NUC domain-containing protein [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 92
Score = 41.2 bits (95), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +E+ LV + + K ++ + G PDR+ + PNG WVE+K + + Q R
Sbjct: 7 ERTIERYLVAQVRAKGGEIRKVKWEGRHGAPDRIAMLPNGRTLWVELKAPGQQCTPHQVR 66
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFL 92
+ Q+V V+ S + VD L
Sbjct: 67 EHERMRGMGQRVVVVDSLKGVDEVL 91
>gi|182682344|ref|YP_001830504.1| VRR-NUC domain-containing protein [Xylella fastidiosa M23]
gi|273810425|ref|YP_003344896.1| putative nuclease [Xylella phage Xfas53]
gi|182632454|gb|ACB93230.1| VRR-NUC domain protein [Xylella fastidiosa M23]
gi|257097800|gb|ACV41106.1| putative nuclease [Xylella phage Xfas53]
Length = 91
Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +E+ LV + + K ++ + G PDR+ + PNG WVE+K + + Q R
Sbjct: 6 ERTIERYLVAQVRAKGGEIRKVKWGGRHGAPDRIAMLPNGRTLWVELKAPGQQCTPHQVR 65
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFL 92
+ Q+V V+ S + VD L
Sbjct: 66 EHERMRGMGQRVVVVDSLKGVDEVL 90
>gi|28199027|ref|NP_779341.1| hypothetical protein PD1135 [Xylella fastidiosa Temecula1]
gi|28199080|ref|NP_779394.1| hypothetical protein PD1192 [Xylella fastidiosa Temecula1]
gi|28199603|ref|NP_779917.1| hypothetical protein PD1728 [Xylella fastidiosa Temecula1]
gi|182681749|ref|YP_001829909.1| VRR-NUC domain-containing protein [Xylella fastidiosa M23]
gi|182681806|ref|YP_001829966.1| VRR-NUC domain-containing protein [Xylella fastidiosa M23]
gi|28057125|gb|AAO28990.1| phage-related protein [Xylella fastidiosa Temecula1]
gi|28057178|gb|AAO29043.1| phage-related protein [Xylella fastidiosa Temecula1]
gi|28057718|gb|AAO29566.1| phage-related protein [Xylella fastidiosa Temecula1]
gi|182631859|gb|ACB92635.1| VRR-NUC domain protein [Xylella fastidiosa M23]
gi|182631916|gb|ACB92692.1| VRR-NUC domain protein [Xylella fastidiosa M23]
gi|307578625|gb|ADN62594.1| VRR-NUC domain-containing protein [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|307580178|gb|ADN64147.1| VRR-NUC domain-containing protein [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|307580242|gb|ADN64211.1| VRR-NUC domain-containing protein [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 92
Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +E+ LV + + K ++ + G PDR+ + PNG WVE+K + + Q R
Sbjct: 7 ERTIERYLVAQVRAKGGEIRKVKWGGRHGAPDRIAMLPNGRTLWVELKAPGQQCTPHQVR 66
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFL 92
+ Q+V V+ S + VD L
Sbjct: 67 EHERMRGMGQRVVVVDSLKGVDEVL 91
>gi|288799808|ref|ZP_06405267.1| putative protein p44 [Prevotella sp. oral taxon 299 str. F0039]
gi|288333056|gb|EFC71535.1| putative protein p44 [Prevotella sp. oral taxon 299 str. F0039]
Length = 100
Score = 41.2 bits (95), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
SE LE+ L K K++ +K N G PDRLII NG + E+K+ GRL+ Q+
Sbjct: 8 SEKVLERNLQKRVKEIGGKAYKFISSNCTGVPDRLIIF-NGRFCFAEIKSYNGRLAPRQE 66
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFLRML 95
I L KV ++ + E+++ ++ +
Sbjct: 67 IEIRKLKNLGAKVFIVYTPEDIESIIKYI 95
>gi|29374968|ref|NP_814121.1| hypothetical protein EF0329 [Enterococcus faecalis V583]
gi|29342426|gb|AAO80192.1| conserved hypothetical protein [Enterococcus faecalis V583]
Length = 106
Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +EK LV+ K++ L +K RG PDR+I+ G F+VE+K G+ Q +
Sbjct: 4 ENDIEKYLVRQIKRIGALCYKFTSPGTRGVPDRIILY-QGNVFFVELKRPGGKPRKDQLK 62
Query: 68 VIATLLLYHQKVQVLSSTEEVD 89
+I V V+ S + VD
Sbjct: 63 IIEKFKEQLIPVFVIDSKQGVD 84
>gi|332160955|ref|YP_004297532.1| VRR-NUC domain protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325665185|gb|ADZ41829.1| VRR-NUC domain protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862110|emb|CBX72274.1| putative protein p44 [Yersinia enterocolitica W22703]
Length = 90
Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y E +E LVK KK+ + +K +R PDRL++ P G +VE K + + A
Sbjct: 3 YNREDSIEDHLVKEVKKVGGIAYKFISPGRRSVPDRLVLLPGGKVIFVECKAPGEKPTAA 62
Query: 65 QKRVIATLLLYHQKVQVLSST 85
Q R H+K++ L T
Sbjct: 63 QLR-------EHEKLRALGFT 76
>gi|293400002|ref|ZP_06644148.1| hypothetical protein HMPREF0863_00285 [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291306402|gb|EFE47645.1| hypothetical protein HMPREF0863_00285 [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 106
Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRG-RLSNAQ 65
E ++EK L L L +K G PDR+II NG +VE+K RG R+S+ Q
Sbjct: 11 PERQVEKYLTDKISNLGGLPWKFTSPGTAGVPDRIIIM-NGLICFVELKRPRGGRISDMQ 69
Query: 66 KRVIATLLLYHQKVQVLSSTEEVD 89
+ I L K V+ + EEVD
Sbjct: 70 QWRIEQLRKQGMKAYVIKNKEEVD 93
>gi|291336802|gb|ADD96337.1| hypothetical protein BACINT_02220 [uncultured organism
MedDCM-OCT-S08-C700]
Length = 79
Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
++EA+ +K+L+ +K V K N+ G PD + + P+ F +E+K +GRLS Q
Sbjct: 1 MTEAQYQKKLIDRHEKEGWTVIKLIMCNKAGLPDLICMKPDEVKF-IEVKGPKGRLSEVQ 59
Query: 66 KRVIATL 72
K I L
Sbjct: 60 KYRIEEL 66
>gi|167746057|ref|ZP_02418184.1| hypothetical protein ANACAC_00752 [Anaerostipes caccae DSM 14662]
gi|167654572|gb|EDR98701.1| hypothetical protein ANACAC_00752 [Anaerostipes caccae DSM 14662]
Length = 93
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++EKRLV KK + K G PDR+I+ P G + E+K + Q
Sbjct: 1 MREKEIEKRLVAEVKKNGGICPKFVSPGYAGMPDRIILLPKGKIAFAELKAPGQKPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
L+ +V V+ TE++ G +R ++
Sbjct: 61 AARHKILMGLGFRVYVIDGTEQIGGVIREIQS 92
>gi|332983342|ref|YP_004464783.1| VRR-NUC domain-containing protein [Mahella australiensis 50-1
BON]
gi|332701020|gb|AEE97961.1| VRR-NUC domain-containing protein [Mahella australiensis 50-1
BON]
Length = 93
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E++L+K K L K G PDRL++ P G + E+K S + Q
Sbjct: 1 MREKYIEQKLIKAVKTAGGLALKFISPGFNGVPDRLLLLPGGIIAFAEIKASGSKPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFL 92
KR L KV V+ ++ G L
Sbjct: 61 KRRHEMLRQLGFKVYVIDDESQIGGML 87
>gi|212712314|ref|ZP_03320442.1| hypothetical protein PROVALCAL_03402 [Providencia alcalifaciens
DSM 30120]
gi|212685060|gb|EEB44588.1| hypothetical protein PROVALCAL_03402 [Providencia alcalifaciens
DSM 30120]
Length = 89
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E+ LV KK+ + +K +RG PDR+++ P+G +VE K + Q
Sbjct: 4 IREDVIERHLVYKVKKVGGIAYKFTSPGRRGVPDRIVLLPHGKIIFVECKAPGEKPRPDQ 63
Query: 66 KRVIATLLLYHQKVQVLSSTE 86
R A L V VL S +
Sbjct: 64 LREHARLFALGFHVVVLDSKD 84
>gi|281416461|ref|YP_003347381.1| hypothetical protein [Enterococcus phage phiFL4A]
gi|270209637|gb|ACZ64176.1| conserved hypothetical protein [Enterococcus phage phiFL4A]
Length = 106
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +EK L++ K+ L +K RG PDR+I+ G F+VE+K G+ Q +
Sbjct: 4 ENDIEKYLIRQIKRTGALCYKFTSPGTRGVPDRIILY-QGNVFFVELKRPGGKPRKDQLK 62
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
+I V V+ S + VD + ++
Sbjct: 63 IIEKFKEQLIPVFVIDSKQGVDTLIYAMQS 92
>gi|71901492|ref|ZP_00683579.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71728748|gb|EAO30892.1| phage-related protein [Xylella fastidiosa Ann-1]
Length = 92
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +E+ LV K + K ++ + G PDR+ + P G WVE+K + + Q R
Sbjct: 7 ERTIERYLVAQVKAKGGEIRKVKWGGRHGAPDRIAMLPEGRTLWVELKAPGQQCTPHQVR 66
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFL 92
+ Q+V V+ S + VD L
Sbjct: 67 EHERMRGMGQRVVVVDSLKGVDEVL 91
>gi|71276268|ref|ZP_00652546.1| phage-related protein [Xylella fastidiosa Dixon]
gi|71902065|ref|ZP_00684105.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71162876|gb|EAO12600.1| phage-related protein [Xylella fastidiosa Dixon]
gi|71728176|gb|EAO30367.1| phage-related protein [Xylella fastidiosa Ann-1]
Length = 92
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +E+ LV + + K ++ + G PDR+ + P G WVE+K + + Q R
Sbjct: 7 ERTIERYLVAQVRAKGGEIRKVKWGGRHGAPDRIAMLPEGRTLWVELKAPGQQCTPHQVR 66
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFL 92
L Q+V V+ S + VD L
Sbjct: 67 EHERLRRMGQRVVVVDSLKGVDEVL 91
>gi|160935261|ref|ZP_02082644.1| hypothetical protein CLOBOL_00157 [Clostridium bolteae ATCC
BAA-613]
gi|158441992|gb|EDP19689.1| hypothetical protein CLOBOL_00157 [Clostridium bolteae ATCC
BAA-613]
Length = 97
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
E +E L K +K+ L FK G PDR+ I P+G ++VE+K G+++ QK
Sbjct: 3 EKDIEDWLNKQIEKMGGLAFKFVSPGNPGVPDRIYILPDGRVWFVELKQQLGKVARIQK 61
>gi|71274494|ref|ZP_00650782.1| phage-related protein [Xylella fastidiosa Dixon]
gi|71900323|ref|ZP_00682458.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71164226|gb|EAO13940.1| phage-related protein [Xylella fastidiosa Dixon]
gi|71729898|gb|EAO31994.1| phage-related protein [Xylella fastidiosa Ann-1]
Length = 92
Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +E+ LV + + K ++ + G PDR+ + P G WVE+K + + Q R
Sbjct: 7 ERTIERYLVAQVRAKGGEIRKVKWGGRHGAPDRIAMLPEGRTLWVELKAPGQQCTPHQVR 66
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFL 92
L Q+V V+ S + VD L
Sbjct: 67 EHERLRRMGQRVVVVDSFKGVDEVL 91
>gi|313898077|ref|ZP_07831616.1| VRR-NUC domain protein [Clostridium sp. HGF2]
gi|312957105|gb|EFR38734.1| VRR-NUC domain protein [Clostridium sp. HGF2]
Length = 93
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKT---SRGRLSNA 64
E +EK+L KK + K + G PDRLI+ P+G + E+K S L A
Sbjct: 3 EKTIEKKLTTAVKKAGGIAPKFVSPSFAGMPDRLILLPDGKFAFAELKAPGESPRPLQKA 62
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFL 92
+ R++ +L +V V+ S E++ G +
Sbjct: 63 RHRLLHSLGF---RVYVIDSVEQIGGMI 87
>gi|71899885|ref|ZP_00682033.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71730325|gb|EAO32408.1| phage-related protein [Xylella fastidiosa Ann-1]
Length = 92
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +E+ LV + + K ++ + G PDR+ + P G WVE+K + + Q R
Sbjct: 7 ERTIERYLVAQVRAKGGEIRKVKWGGRHGAPDRIAMLPEGRTLWVELKAPGQQCTPHQVR 66
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFL 92
+ Q+V V+ S + VD L
Sbjct: 67 EHERMRRMGQRVVVVDSLKGVDEVL 91
>gi|331090253|ref|ZP_08339140.1| hypothetical protein HMPREF1025_02723 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330401872|gb|EGG81447.1| hypothetical protein HMPREF1025_02723 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 108
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%)
Query: 4 DYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSN 63
+ L E+ +EK LVK +K + K G PDRL++ P G +VE+K +L
Sbjct: 14 EVLRESVIEKALVKEAKSRGGMAVKFVSPGFDGVPDRLVLLPGGKCAFVELKAPGKKLRP 73
Query: 64 AQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+++ L V V+ E++ G L ++
Sbjct: 74 LKEKRKHQLEALGFSVYVIDGLEQIGGVLHGIQ 106
>gi|284048431|ref|YP_003398770.1| VRR-NUC domain protein [Acidaminococcus fermentans DSM 20731]
gi|283952652|gb|ADB47455.1| VRR-NUC domain protein [Acidaminococcus fermentans DSM 20731]
Length = 100
Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 4 DYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR--- 60
++L E ++E LV +K L K + G PDRL++ P+G +VE+K +
Sbjct: 2 NFLREKQIEHSLVTAVRKQGGLALKFVSPSYAGMPDRLVLLPDGKMAFVEVKAPGKKPRV 61
Query: 61 LSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLR 93
L Q R++ L +V VL + G L+
Sbjct: 62 LQEKQHRMLRALGF---QVFVLDDASAIPGLLK 91
>gi|320530607|ref|ZP_08031659.1| VRR-NUC domain protein [Selenomonas artemidis F0399]
gi|320137134|gb|EFW29064.1| VRR-NUC domain protein [Selenomonas artemidis F0399]
Length = 123
Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%)
Query: 1 MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR 60
+R E+ +E+ V+ KK L K + G PDR+++ P G + E+K +
Sbjct: 14 LRLHIDHESWIEQAFVREVKKRGGLALKFVSPGRVGVPDRIVLIPGGRCVFAEIKAPGKK 73
Query: 61 LSNAQKRVIATLLLYHQKVQVLSSTEEVDGF 91
L Q + + +V V+SS EEV F
Sbjct: 74 LRKLQIAAHRVIHGFGLEVSVVSSLEEVKTF 104
>gi|71897668|ref|ZP_00679913.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71898926|ref|ZP_00681093.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71731338|gb|EAO33402.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71732571|gb|EAO34624.1| phage-related protein [Xylella fastidiosa Ann-1]
Length = 92
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +E+ LV + + K ++ + G PDR+ + P G WVE+K + + Q R
Sbjct: 7 ERTIERYLVAQVRAKGGEIRKVKWGGRHGAPDRIAMLPEGRTLWVELKAPGQQCTPHQVR 66
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFL 92
+ Q+V V+ S + VD L
Sbjct: 67 EHERMRGMGQRVVVVDSLKGVDEVL 91
>gi|71275470|ref|ZP_00651756.1| phage-related protein [Xylella fastidiosa Dixon]
gi|71276172|ref|ZP_00652452.1| phage-related protein [Xylella fastidiosa Dixon]
gi|71898327|ref|ZP_00680500.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71900966|ref|ZP_00683079.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71163090|gb|EAO12812.1| phage-related protein [Xylella fastidiosa Dixon]
gi|71163770|gb|EAO13486.1| phage-related protein [Xylella fastidiosa Dixon]
gi|71729271|gb|EAO31389.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71731850|gb|EAO33908.1| phage-related protein [Xylella fastidiosa Ann-1]
Length = 92
Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +E+ LV + + K ++ + G PDR+ + P G WVE+K + + Q R
Sbjct: 7 ERTIERYLVAQVRAKGGEIRKVKWGGRHGAPDRIAMLPEGRTLWVELKAPGQQCTPHQVR 66
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFL 92
+ Q+V V+ S + VD L
Sbjct: 67 EHERMRRMGQRVVVVDSFKGVDEVL 91
>gi|298346381|ref|YP_003719068.1| VRR-NUC domain-containing protein [Mobiluncus curtisii ATCC
43063]
gi|298236442|gb|ADI67574.1| VRR-NUC domain protein [Mobiluncus curtisii ATCC 43063]
Length = 93
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E LE+ LVK + L + +K G PDR+++ P+G +VE+K G++ Q
Sbjct: 1 MKEQHLEQALVKTVEALGGVCWKLVSPGTAGVPDRIVLLPDGHVGFVEVKAPGGKVRAIQ 60
Query: 66 KR 67
K
Sbjct: 61 KH 62
>gi|315654959|ref|ZP_07907864.1| VRR-NUC domain protein [Mobiluncus curtisii ATCC 51333]
gi|315490920|gb|EFU80540.1| VRR-NUC domain protein [Mobiluncus curtisii ATCC 51333]
Length = 93
Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E LE+ LVK + L + +K G PDR+++ P+G +VE+K G++ Q
Sbjct: 1 MKEQHLEQALVKTIEALGGVCWKLVSPGTAGVPDRIVLLPDGHVGFVEVKAPGGKVRAIQ 60
Query: 66 KR 67
K
Sbjct: 61 KH 62
>gi|238854133|ref|ZP_04644480.1| phage associated protein [Lactobacillus gasseri 202-4]
gi|238833209|gb|EEQ25499.1| phage associated protein [Lactobacillus gasseri 202-4]
Length = 93
Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E ++E VK +++ L K + G PDRL++ P G +VEMK+ Q +
Sbjct: 3 EKRIESAFVKATQQRGGLCLKFTSPSMTGVPDRLVLLPEGHMGFVEMKSPGKHPRPLQIQ 62
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
++ L +V V E++ G L ++
Sbjct: 63 RLSQLKQLGYQVFVCDQFEQIGGMLDAIQA 92
>gi|293401138|ref|ZP_06645282.1| hypothetical protein HMPREF0863_01422 [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291305264|gb|EFE46509.1| hypothetical protein HMPREF0863_01422 [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 95
Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKT---SRGRLSNA 64
E +E +L +K + K + RG PDRL++ P+G +VE+K S L A
Sbjct: 5 EKNIENKLTTAVEKAGGIAPKFVSPSLRGMPDRLVLLPDGVFAFVELKAPGESPRPLQRA 64
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
+ R + +L KV V+ S + + G L L
Sbjct: 65 RHRKLRSLGF---KVYVIDSIDGIGGMLHEL 92
>gi|332800347|ref|YP_004461846.1| VRR-NUC domain-containing protein [Tepidanaerobacter sp. Re1]
gi|332698082|gb|AEE92539.1| VRR-NUC domain-containing protein [Tepidanaerobacter sp. Re1]
Length = 92
Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++E +L + K+ K G PDRL++ P G+ +VE+K +L Q
Sbjct: 1 MREKQIEAKLKREIKRRGGAALKFTSPGIAGVPDRLVLLPTGSVVFVELKAPGKKLRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFL 92
+ L KV VL S VD F+
Sbjct: 61 LKRKEQLESLGFKVYVLDSYAAVDAFI 87
>gi|116630099|ref|YP_815271.1| Phage associated protein [Lactobacillus gasseri ATCC 33323]
gi|116095681|gb|ABJ60833.1| Phage associated protein [Lactobacillus gasseri ATCC 33323]
Length = 103
Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E ++E VK +++ L K + G PDRL++ P G +VEMK+ Q +
Sbjct: 13 EKRIESAFVKATQQRGGLCLKFTSPSMTGVPDRLVLLPEGHMGFVEMKSPGKHPRPLQIQ 72
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
++ L +V V E++ G L ++
Sbjct: 73 RLSQLKQLGYQVFVCDQFEQIGGMLDAIQA 102
>gi|71898990|ref|ZP_00681156.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71901325|ref|ZP_00683421.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71728909|gb|EAO31044.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71731236|gb|EAO33301.1| phage-related protein [Xylella fastidiosa Ann-1]
Length = 92
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%)
Query: 11 LEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIA 70
+E+ LV + + K ++ + G PDR+ + P G WVE+K + + Q R
Sbjct: 10 IERYLVAQVRAKGGEIRKVKWGGRHGAPDRIAMLPEGRTLWVELKAPGQQCTPHQVREHE 69
Query: 71 TLLLYHQKVQVLSSTEEVDGFL 92
+ Q+V V+ S + VD L
Sbjct: 70 RMRGMGQRVVVVDSLKGVDEVL 91
>gi|170729636|ref|YP_001775069.1| hypothetical protein Xfasm12_0425 [Xylella fastidiosa M12]
gi|170730323|ref|YP_001775756.1| hypothetical protein Xfasm12_1175 [Xylella fastidiosa M12]
gi|170730596|ref|YP_001776029.1| hypothetical protein Xfasm12_1483 [Xylella fastidiosa M12]
gi|167964429|gb|ACA11439.1| conserved hypothetical protein [Xylella fastidiosa M12]
gi|167965116|gb|ACA12126.1| conserved hypothetical protein [Xylella fastidiosa M12]
gi|167965389|gb|ACA12399.1| conserved hypothetical protein [Xylella fastidiosa M12]
Length = 92
Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +E+ LV + + K ++ + G PDR+ + P G WVE+K + + Q R
Sbjct: 7 ERTIERYLVAQVRAKGGEIRKVKWGGRHGAPDRIAMLPEGRTLWVELKAPGQQCTLHQVR 66
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFL 92
+ Q+V V+ S + VD L
Sbjct: 67 EHERMRRMGQRVVVVDSLKGVDEVL 91
>gi|323693307|ref|ZP_08107525.1| VRR-NUC domain-containing protein [Clostridium symbiosum
WAL-14673]
gi|323502790|gb|EGB18634.1| VRR-NUC domain-containing protein [Clostridium symbiosum
WAL-14673]
Length = 93
Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKT---SRGRLSNA 64
E +EK+L KK + K + G PDR+I+ P+G + E+K S L A
Sbjct: 3 EKTIEKKLTTAVKKAGGIAPKFVSPSFAGMPDRIILLPDGKFAFAELKAPGESPRPLQKA 62
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFL 92
+ R++ +L +V V+ S E++ G +
Sbjct: 63 RHRLLRSLGF---RVYVIDSIEQIGGMI 87
>gi|219855698|ref|YP_002472820.1| hypothetical protein CKR_2355 [Clostridium kluyveri NBRC 12016]
gi|219569422|dbj|BAH07406.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 106
Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
++ E +EK+LV KK+ + K G PDRL++ P+G +VE+K +
Sbjct: 13 FMLEKYIEKKLVAEVKKMGGIAAKFVSPGLDGMPDRLVLLPHGKMAFVELKAPGKKPRLL 72
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFL 92
Q R I L V+ +++ G L
Sbjct: 73 QIRRIKQLQKLGFACYVIDDVKQIGGIL 100
>gi|297587095|ref|ZP_06945740.1| VRR-NUC domain protein [Finegoldia magna ATCC 53516]
gi|297575076|gb|EFH93795.1| VRR-NUC domain protein [Finegoldia magna ATCC 53516]
Length = 65
Score = 37.4 bits (85), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 36 GCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
G PDR+I+ P G +VE K G QK+ I KV VL S E +D ++ +
Sbjct: 3 GIPDRIILLPKGKVGFVETKRPGGEPRPIQKKRIRQFKNLGFKVYVLDSKENIDEIIKRI 62
>gi|227530257|ref|ZP_03960306.1| VRR_NUC domain protein [Lactobacillus vaginalis ATCC 49540]
gi|227349830|gb|EEJ40121.1| VRR_NUC domain protein [Lactobacillus vaginalis ATCC 49540]
Length = 93
Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E ++E VK + + L K + G PDRL++ P+G +VEMK R Q +
Sbjct: 3 EKRIETAFVKATHQRGGLCLKFTSPSMAGVPDRLVLLPDGHMGFVEMKAPGKRPRPLQVQ 62
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
++ L +V V ++ G L ++
Sbjct: 63 RLSQLKQLGYQVFVCDQFGQIGGMLDAIQ 91
>gi|291336952|gb|ADD96479.1| VRR NUC domain containing protein [uncultured organism
MedDCM-OCT-S09-C94]
Length = 120
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
+ GCPD ++ P G ++E+K +GRLS+ QK
Sbjct: 49 KSGCPDIIVEYPMGKILYIELKNEKGRLSDNQK 81
>gi|313895645|ref|ZP_07829201.1| conserved hypothetical protein [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312975771|gb|EFR41230.1| conserved hypothetical protein [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 122
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 36 GCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
G PDRL++ P G ++E+K + Q R I L KV V+ EE+ G + L
Sbjct: 63 GVPDRLVLMPGGKMCFMELKAPGRKPRPLQVRRIEQLRALGFKVYVVDGKEEIGGIINAL 122
>gi|256847829|ref|ZP_05553274.1| phage associated protein [Lactobacillus coleohominis 101-4-CHN]
gi|256715518|gb|EEU30494.1| phage associated protein [Lactobacillus coleohominis 101-4-CHN]
Length = 93
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E ++E VK + + L K + G PDRL++ P+G +VEMK Q +
Sbjct: 3 EKRIETAFVKATHQRGGLCLKFTSPSMAGVPDRLVLLPDGHMGFVEMKAPGKHPRPLQVQ 62
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
I L +V V +++ G L ++
Sbjct: 63 RINQLKRLGYQVFVCDQFDQIGGMLDAIQA 92
>gi|204927408|ref|ZP_03218610.1| VRR-NUC domain protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|204324073|gb|EDZ09268.1| VRR-NUC domain protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
Length = 89
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTS 57
Y E+ +EK LV KK + FK +R PDR+++ P G +VE K
Sbjct: 3 YERESIIEKHLVAEVKKAGGVAFKFVSPGRRSVPDRIVLLPGGRLVFVECKAP 55
>gi|331654017|ref|ZP_08355018.1| putative protein p44 [Escherichia coli M718]
gi|331048866|gb|EGI20942.1| putative protein p44 [Escherichia coli M718]
Length = 98
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTS 57
Y E+ +EK LV KK + FK R PDR+++ P G +VE K+
Sbjct: 12 YERESLIEKHLVAEVKKAGGVAFKFVSPGHRSVPDRIVLLPGGRIVFVECKSP 64
>gi|188494825|ref|ZP_03002095.1| phage associated protein [Escherichia coli 53638]
gi|188490024|gb|EDU65127.1| phage associated protein [Escherichia coli 53638]
gi|323173127|gb|EFZ58758.1| VRR-NUC domain protein [Escherichia coli LT-68]
gi|332088067|gb|EGI93192.1| VRR-NUC domain protein [Shigella boydii 5216-82]
Length = 98
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 1 MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTS 57
++ Y E+ +EK LV KK + FK R PDR+++ P G +VE K+
Sbjct: 8 IQMAYERESLIEKHLVAEVKKAGGVAFKFVSPGHRSVPDRIVLLPGGRIVFVECKSP 64
>gi|153955275|ref|YP_001396040.1| hypothetical protein CKL_2657 [Clostridium kluyveri DSM 555]
gi|146348133|gb|EDK34669.1| Phage-related protein [Clostridium kluyveri DSM 555]
Length = 93
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +EK+LV KK+ + K G PDRL++ P+G +VE+K + Q R
Sbjct: 3 EKYIEKKLVAEVKKMGGIAAKFVSPGLDGMPDRLVLLPHGKMAFVELKAPGKKPRLLQIR 62
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFL 92
I L V+ +++ G L
Sbjct: 63 RIKQLQKLGFACYVIDDVKQIGGIL 87
>gi|167757892|ref|ZP_02430019.1| hypothetical protein CLOSCI_00223 [Clostridium scindens ATCC 35704]
gi|167664546|gb|EDS08676.1| hypothetical protein CLOSCI_00223 [Clostridium scindens ATCC 35704]
Length = 120
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 2 RTDY-LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR 60
R +Y + E ++E++LV+ +K + K G PDRL++ P+G + E+K R
Sbjct: 21 RKEYGMREKQIEQKLVREVRKRGGICPKFTSPGFAGMPDRLLLLPHGRMAFAELKAPGCR 80
Query: 61 ---LSNAQKRVIATLLLYHQKVQVLSSTEEVD 89
L A+ +++A L +V V+ S E+++
Sbjct: 81 PRPLQEARHKLLARLGF---RVYVIDSPEQIE 109
>gi|167039883|ref|YP_001662868.1| hypothetical protein Teth514_1238 [Thermoanaerobacter sp. X514]
gi|300915370|ref|ZP_07132684.1| VRR-NUC domain protein [Thermoanaerobacter sp. X561]
gi|307724793|ref|YP_003904544.1| VRR-NUC domain-containing protein [Thermoanaerobacter sp. X513]
gi|166854123|gb|ABY92532.1| hypothetical protein Teth514_1238 [Thermoanaerobacter sp. X514]
gi|300888646|gb|EFK83794.1| VRR-NUC domain protein [Thermoanaerobacter sp. X561]
gi|307581854|gb|ADN55253.1| VRR-NUC domain-containing protein [Thermoanaerobacter sp. X513]
Length = 93
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E K+E++LVK K + + K G PDRLI+ PN +VE+K L Q
Sbjct: 1 MREKKIEQQLVKEVKDIGGIALKIASPGFDGMPDRLILLPNRKLAFVEVKAPGKTLRPLQ 60
Query: 66 KR 67
++
Sbjct: 61 EK 62
>gi|323484111|ref|ZP_08089481.1| hypothetical protein HMPREF9474_01232 [Clostridium symbiosum
WAL-14163]
gi|323402553|gb|EGA94881.1| hypothetical protein HMPREF9474_01232 [Clostridium symbiosum
WAL-14163]
Length = 93
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E++L KK+ + K G PDR+++ P+ +VE+K +L Q
Sbjct: 1 MRENAIERQLAMAVKKMGGMAVKFVSPGLDGVPDRIVLLPDKKMAFVELKAPGKKLRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFL 92
++ L V V+ E++ G L
Sbjct: 61 EKRRWQLEALGFPVYVIDGAEQIGGVL 87
>gi|42779466|ref|NP_976713.1| phage protein, putative [Bacillus cereus ATCC 10987]
gi|42735382|gb|AAS39321.1| phage protein, putative [Bacillus cereus ATCC 10987]
Length = 93
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +EK+LV KK++ + K G PDR+++ P+G ++E+K + Q R
Sbjct: 3 EKYIEKKLVAEVKKMEGIAAKFVSPGLDGMPDRIVLLPHGKMAFIELKAPGKKPRPLQIR 62
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFL 92
I L V+ +++ G L
Sbjct: 63 RIRQLQKLGFTCYVIDDVKQIGGVL 87
>gi|300764699|ref|ZP_07074690.1| conserved hypothetical protein [Listeria monocytogenes FSL
N1-017]
gi|300514585|gb|EFK41641.1| conserved hypothetical protein [Listeria monocytogenes FSL
N1-017]
Length = 94
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTS 57
+ E ++E+ LVK K++ + K G PDRL++ PNG +VE+K
Sbjct: 1 MREKQVEQALVKAVKRVGGICPKFTSPGLAGVPDRLVLMPNGKLGFVEVKAP 52
>gi|191174025|ref|ZP_03035542.1| VRR_NUC domain protein [Escherichia coli F11]
gi|190905716|gb|EDV65338.1| VRR_NUC domain protein [Escherichia coli F11]
gi|324014346|gb|EGB83565.1| VRR-NUC domain protein [Escherichia coli MS 60-1]
Length = 98
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTS 57
Y E+ +EK LV KK + FK +R PDR+++ P G +VE K
Sbjct: 4 YERESLIEKHLVAEVKKAGGVAFKFVSPGRRSVPDRIVLLPGGRIVFVECKAP 56
>gi|331648303|ref|ZP_08349392.1| putative protein p44 [Escherichia coli M605]
gi|331042852|gb|EGI14993.1| putative protein p44 [Escherichia coli M605]
Length = 98
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTS 57
Y E+ +EK LV KK + FK +R PDR+++ P G +VE K
Sbjct: 4 YERESLIEKHLVAEVKKAGGVAFKFVSPGRRSVPDRIVLLPGGRIVFVECKAP 56
>gi|227544672|ref|ZP_03974721.1| phage associated protein [Lactobacillus reuteri CF48-3A]
gi|300909461|ref|ZP_07126922.1| VRR-NUC domain protein [Lactobacillus reuteri SD2112]
gi|227185348|gb|EEI65419.1| phage associated protein [Lactobacillus reuteri CF48-3A]
gi|300893326|gb|EFK86685.1| VRR-NUC domain protein [Lactobacillus reuteri SD2112]
Length = 148
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E ++E VK + + L K + G PDRL++ P+G +VEMK R Q +
Sbjct: 58 EKQIETAFVKATHQRGGLCLKFISPSMAGVPDRLVLLPDGHMGFVEMKAPGKRPRPLQVQ 117
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
++ L +V V ++ G L ++
Sbjct: 118 RLSQLKQLGYQVFVCDQFGQIGGMLDAIQ 146
>gi|220930214|ref|YP_002507123.1| VRR-NUC domain protein [Clostridium cellulolyticum H10]
gi|220000542|gb|ACL77143.1| VRR-NUC domain protein [Clostridium cellulolyticum H10]
Length = 93
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +EK+LV KK+ + K G PDRL++ P+G +VE+K + Q R
Sbjct: 3 EKYIEKKLVAEVKKMGGIAAKFVSPGLDGMPDRLVLLPHGKMAFVELKAPGKKPRLLQIR 62
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFL 92
I L V+ +++ G L
Sbjct: 63 RIKQLQKLGFTCYVIDDVKQIGGVL 87
>gi|260845242|ref|YP_003223020.1| hypothetical protein ECO103_3135 [Escherichia coli O103:H2 str.
12009]
gi|257760389|dbj|BAI31886.1| hypothetical protein ECO103_3135 [Escherichia coli O103:H2 str.
12009]
gi|309702942|emb|CBJ02273.1| putative phage related protein [Escherichia coli ETEC H10407]
Length = 97
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTS 57
Y E+ +EK LV KK + FK +R PDR+++ P G +VE K
Sbjct: 3 YERESLIEKHLVAEVKKAGGVAFKFISPGRRSVPDRIVLLPGGRIVFVECKAP 55
>gi|194429282|ref|ZP_03061809.1| VRR-NUC domain protein [Escherichia coli B171]
gi|218555137|ref|YP_002388050.1| hypothetical protein ECIAI1_2667 [Escherichia coli IAI1]
gi|194412690|gb|EDX28985.1| VRR-NUC domain protein [Escherichia coli B171]
gi|218361905|emb|CAQ99505.1| conserved hypothetical protein from bacteriophage origin
[Escherichia coli IAI1]
gi|323159214|gb|EFZ45204.1| VRR-NUC domain protein [Escherichia coli E128010]
Length = 95
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTS 57
Y E +EK LV KK + FK +R PDR+++ P G +VE K+
Sbjct: 3 YERENLIEKHLVAEVKKAGGVAFKFVSPGRRSVPDRIVLLPGGRIIFVECKSP 55
>gi|156098143|ref|XP_001615104.1| hypothetical protein [Plasmodium vivax SaI-1]
gi|148803978|gb|EDL45377.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 2276
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 27 FKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSST 85
F+ +++ RG P L ITP+GAHF +E R NA + + + H + + +T
Sbjct: 365 FEVKYVRGRGSPGGLAITPDGAHFSMEFSIVR----NAAEYTMVDFIREHFTRECMHNT 419
>gi|295096882|emb|CBK85972.1| VRR-NUC domain [Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 91
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y E+ +EK LV KK + +K +R PDR+++ P G +VE K G+ A
Sbjct: 3 YERESLIEKHLVAEVKKAGGVAYKFVSPGRRSVPDRIVLLPGGRLVFVECKAP-GKPPRA 61
Query: 65 QKRVIATLLLYHQKVQVLSST 85
+ L H++++ L T
Sbjct: 62 DQ------LREHERLRALGFT 76
>gi|226949729|ref|YP_002804820.1| VRR-NUC domain protein [Clostridium botulinum A2 str. Kyoto]
gi|226843509|gb|ACO86175.1| VRR-NUC domain protein [Clostridium botulinum A2 str. Kyoto]
Length = 62
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 38 PDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFL 92
PDR+++ P G +VE+K + QK I L +V+++ S E+++ F+
Sbjct: 2 PDRIVLLPQGRIVFVELKAPDKKPRPIQKYRIKELRALGFRVEIIDSIEDINNFV 56
>gi|51596137|ref|YP_070328.1| hypothetical protein YPTB1802 [Yersinia pseudotuberculosis IP
32953]
gi|51589419|emb|CAH21041.1| hypothetical protein YPTB1802 [Yersinia pseudotuberculosis IP
32953]
Length = 152
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 34 QRGCPDRLIITPNG--AHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
++G PD + P G A W+EMK+S+G ++N Q ++ L KV V
Sbjct: 80 RKGVPDLFLALPRGGYAGLWIEMKSSKGHVNNNQNCWLSKLGDIGYKVDV 129
>gi|268610657|ref|ZP_06144384.1| VRR_NUC domain-containing protein [Ruminococcus flavefaciens
FD-1]
Length = 93
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++E +LVK K + +K G PDR+++ +G +VE+K + Q
Sbjct: 1 MRENEIETKLVKAVKARGGVCWKFVSPGTAGVPDRIVLMQSGRIAFVEVKAPGEKPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFL 92
+ I L KV VL E++ G +
Sbjct: 61 RVRIKLLRRLGFKVYVLDGAEQIGGII 87
>gi|291283831|ref|YP_003500649.1| Phage associated protein [Escherichia coli O55:H7 str. CB9615]
gi|290763704|gb|ADD57665.1| Phage associated protein [Escherichia coli O55:H7 str. CB9615]
Length = 89
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTS 57
Y E +EK LV KK + FK ++R PDR+++ P G +VE K+
Sbjct: 3 YERENLIEKHLVAEVKKAGGVAFKFISPSRRSVPDRIVLLPGGRLVFVECKSP 55
>gi|297583089|ref|YP_003698869.1| VRR-NUC domain-containing protein [Bacillus selenitireducens
MLS10]
gi|297141546|gb|ADH98303.1| VRR-NUC domain protein [Bacillus selenitireducens MLS10]
Length = 96
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
++E +EK+LV ++ + K G PDRLI+ P G +VE+K RL Q
Sbjct: 1 MTEKDIEKQLVVSTRTAGGMAPKLVSPGFDGIPDRLILMPGGRIGFVEVKAPGKRLRPLQ 60
Query: 66 KR 67
++
Sbjct: 61 EK 62
>gi|213157759|ref|YP_002320557.1| hypothetical protein AB57_3238 [Acinetobacter baumannii AB0057]
gi|301346503|ref|ZP_07227244.1| hypothetical protein AbauAB0_09664 [Acinetobacter baumannii AB056]
gi|301594702|ref|ZP_07239710.1| hypothetical protein AbauAB059_02795 [Acinetobacter baumannii
AB059]
gi|213056919|gb|ACJ41821.1| hypothetical protein AB57_3238 [Acinetobacter baumannii AB0057]
Length = 141
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 36 GCPDRLIITPNGA--HFWVEMKTSRGRLSNAQKRVIATL 72
G PD +I PNG W+E+K+ +G+L +Q+ +I L
Sbjct: 77 GVPDLQLIVPNGEIHGLWIELKSKKGKLQPSQRLMIQRL 115
>gi|260556797|ref|ZP_05829015.1| PmgM [Acinetobacter baumannii ATCC 19606]
gi|260410056|gb|EEX03356.1| PmgM [Acinetobacter baumannii ATCC 19606]
Length = 141
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 36 GCPDRLIITPNGA--HFWVEMKTSRGRLSNAQKRVIATL 72
G PD +I PNG W+E+K+ +G+L +Q+ +I L
Sbjct: 77 GVPDLQLIVPNGEIHGLWIELKSKKGKLQPSQRLMIQRL 115
>gi|218133419|ref|ZP_03462223.1| hypothetical protein BACPEC_01284 [Bacteroides pectinophilus ATCC
43243]
gi|217990794|gb|EEC56800.1| hypothetical protein BACPEC_01284 [Bacteroides pectinophilus ATCC
43243]
Length = 93
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ-- 65
E+ +E+ L + +KK + K G PDR+++ P+G +VE+K + Q
Sbjct: 3 ESTVERHLREEAKKRKGMALKFVSPGMNGVPDRIVLMPDGKMAFVELKAPGKKPRPLQLK 62
Query: 66 -KRVIATLLLYHQKVQVLSSTEEVDGFL 92
KR++ L V V+ + E++ G L
Sbjct: 63 RKRMLERLGF---PVYVVDNIEQIGGIL 87
>gi|153821464|ref|ZP_01974131.1| conjugative coupling factor [Vibrio cholerae B33]
gi|229509119|ref|ZP_04398606.1| TraD [Vibrio cholerae B33]
gi|229608791|ref|YP_002879439.1| TraD [Vibrio cholerae MJ-1236]
gi|126521064|gb|EAZ78287.1| conjugative coupling factor [Vibrio cholerae B33]
gi|229353876|gb|EEO18811.1| TraD [Vibrio cholerae B33]
gi|229371446|gb|ACQ61869.1| TraD [Vibrio cholerae MJ-1236]
Length = 606
Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 43 ITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ PN F VE+K + + K+ +A LL Y++++Q +++ +++G L M E
Sbjct: 306 VYPN---FSVEIKRFTEKANTLAKQAMAMLLFYYERIQPIAANTDLEGLLSMFE 356
>gi|331085753|ref|ZP_08334836.1| hypothetical protein HMPREF0987_01139 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406676|gb|EGG86181.1| hypothetical protein HMPREF0987_01139 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 94
Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+SE +E++L +KK+ K G PDRL++ P G +VE+K ++ Q
Sbjct: 2 VSEKSIEQKLRTETKKMGGWAVKFSSPGLDGMPDRLVLFPGGKLGFVELKAPGKKMRPLQ 61
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFL 92
++ TL V + S E + G L
Sbjct: 62 EKRKRTLEELGFLVFCVDSKEMIGGVL 88
>gi|57234141|ref|YP_181812.1| hypothetical protein DET1097 [Dehalococcoides ethenogenes 195]
gi|57224589|gb|AAW39646.1| conserved hypothetical protein [Dehalococcoides ethenogenes 195]
Length = 95
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR---LS 62
+ E +EK+L+ K + + K G PDRL++ P G + E+K + L
Sbjct: 3 IDEKTIEKKLINAVKSMGGIAPKFVSPGFDGMPDRLVLLPGGVMAFAELKAPGKKPRPLQ 62
Query: 63 NAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
A+ R++ L KV V+ ++ G L L
Sbjct: 63 LARHRLLRELGF---KVYVIDDISQIGGMLDELHA 94
>gi|300856811|ref|YP_003781795.1| phage-like protein [Clostridium ljungdahlii DSM 13528]
gi|300436926|gb|ADK16693.1| phage related protein [Clostridium ljungdahlii DSM 13528]
Length = 91
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E+ +EKRL K +K+ K G PDR+++ P+G +VE+K + Q+
Sbjct: 3 ESVIEKRLKKEIEKIGGKALKFVSPGMSGVPDRIVLLPHGKIIFVELKAPGKKRRKLQEY 62
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFLRML 95
L +V+ + S V F++ L
Sbjct: 63 RAKELNTLGFRVECIDSISGVKQFIKEL 90
>gi|259156604|gb|ACV96547.1| conjugative coupling factor [Vibrio fluvialis Ind1]
Length = 461
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 43 ITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ PN F VE+K + + K+ +A LL Y++++Q +++ +++G L M E
Sbjct: 306 VYPN---FSVEIKRFTEKANTLAKQAMAMLLFYYERIQPVAANTDLEGLLSMFE 356
>gi|259156486|gb|ACV96430.1| conjugative coupling factor [Vibrio cholerae Mex1]
Length = 606
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 43 ITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ PN F VE+K + + K+ +A LL Y++++Q +++ +++G L M E
Sbjct: 306 VYPN---FSVEIKRFTEKANTLAKQAMAMLLFYYERIQPVAANTDLEGLLSMFE 356
>gi|259156114|gb|ACV96062.1| conjugative coupling factor [Providencia alcalifaciens Ban1]
Length = 606
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 43 ITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ PN F VE+K + + K+ +A LL Y++++Q +++ +++G L M E
Sbjct: 306 VYPN---FSVEIKRFTEKANTLAKQAMAMLLFYYERIQPVAANTDLEGLLSMFE 356
>gi|255743734|ref|ZP_05417692.1| conjugative transfer protein TraD [Vibrio cholera CIRS 101]
gi|255738595|gb|EET93982.1| conjugative transfer protein TraD [Vibrio cholera CIRS 101]
gi|259156182|gb|ACV96129.1| conjugative coupling factor [Vibrio cholerae Ban5]
gi|259156418|gb|ACV96363.1| conjugative coupling factor [Vibrio cholerae Ind5]
Length = 606
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 43 ITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ PN F VE+K + + K+ +A LL Y++++Q +++ +++G L M E
Sbjct: 306 VYPN---FSVEIKRFTEKANTLAKQAMAMLLFYYERIQPVAANTDLEGLLSMFE 356
>gi|197286321|ref|YP_002152193.1| plasmid conjugative transfer protein [Proteus mirabilis HI4320]
gi|194683808|emb|CAR44883.1| putative plasmid conjugative transfer protein [Proteus mirabilis
HI4320]
Length = 606
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 43 ITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ PN F VE+K + + K+ +A LL Y++++Q +++ +++G L M E
Sbjct: 306 VYPN---FSVEIKRFTEKANTLAKQAMAMLLFYYERIQPVAANTDLEGLLSMFE 356
>gi|172051567|emb|CAQ34963.1| TraD [Photobacterium damselae subsp. piscicida]
Length = 606
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 43 ITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ PN F VE+K + + K+ +A LL Y++++Q +++ +++G L M E
Sbjct: 306 VYPN---FSVEIKRFTEKANTLAKQAMAMLLFYYERIQPVAANTDLEGLLSMFE 356
>gi|20095138|gb|AAM08004.1| TraD [Providencia rettgeri]
Length = 606
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 43 ITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ PN F VE+K + + K+ +A LL Y++++Q +++ +++G L M E
Sbjct: 306 VYPN---FSVEIKRFTEKANTLAKQAMAMLLFYYERIQPVAANTDLEGLLSMFE 356
>gi|21885274|gb|AAL59680.1| conjugative coupling factor [Vibrio cholerae]
Length = 599
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 43 ITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ PN F VE+K + + K+ +A LL Y++++Q +++ +++G L M E
Sbjct: 299 VYPN---FSVEIKRFTEKANTLAKQAMAMLLFYYERIQPVAANTDLEGLLSMFE 349
>gi|254850936|ref|ZP_05240286.1| conjugative coupling factor [Vibrio cholerae MO10]
gi|254846641|gb|EET25055.1| conjugative coupling factor [Vibrio cholerae MO10]
gi|259156353|gb|ACV96299.1| conjugative coupling factor [Vibrio cholerae Ind4]
Length = 606
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 43 ITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ PN F VE+K + + K+ +A LL Y++++Q +++ +++G L M E
Sbjct: 306 VYPN---FSVEIKRFTEKANTLAKQAMAMLLFYYERIQPVAANTDLEGLLSMFE 356
>gi|120597929|ref|YP_962503.1| hypothetical protein Sputw3181_1099 [Shewanella sp. W3-18-1]
gi|120558022|gb|ABM23949.1| conserved hypothetical protein [Shewanella sp. W3-18-1]
Length = 607
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 43 ITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ PN F VE+K + + K+ +A LL Y++++Q +++ +++G L M E
Sbjct: 307 VYPN---FSVEIKRFTEKANTLAKQAMAMLLFYYERIQPVAANTDLEGLLSMFE 357
>gi|227544669|ref|ZP_03974718.1| phage associated protein [Lactobacillus reuteri CF48-3A]
gi|300909416|ref|ZP_07126877.1| VRR-NUC domain protein [Lactobacillus reuteri SD2112]
gi|227185351|gb|EEI65422.1| phage associated protein [Lactobacillus reuteri CF48-3A]
gi|300893281|gb|EFK86640.1| VRR-NUC domain protein [Lactobacillus reuteri SD2112]
Length = 148
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTS 57
E ++E VK + + L K + G PDRL++ P+G +VEMK
Sbjct: 58 EKQIETTFVKATHQRGGLCLKFTSPSMAGVPDRLVLLPDGHMGFVEMKAP 107
>gi|262043425|ref|ZP_06016550.1| hypothetical protein HMPREF0484_3568 [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|259039251|gb|EEW40397.1| hypothetical protein HMPREF0484_3568 [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
Length = 89
Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTS 57
Y E+ +EK L K + + +K +R PDR+++ P G +VE KT
Sbjct: 3 YERESIIEKHLTATVKAVGGIAYKFVSPGRRSVPDRIVLLPGGRIVFVECKTP 55
>gi|313896465|ref|ZP_07830016.1| VRR-NUC domain protein [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312974889|gb|EFR40353.1| VRR-NUC domain protein [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 93
Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E++L K + + K G PDRL++ P G +VE+KT + Q
Sbjct: 1 MYERTIEQKLAARVKAMGGIAPKFTSPGFDGMPDRLVLLPGGRMGFVELKTPGKKPRALQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
L KV V+ E++D L ++
Sbjct: 61 LARHRLLRRLGFKVYVIDGIEQIDSVLEEID 91
>gi|150391740|ref|YP_001321789.1| VRR_NUC domain-containing protein [Alkaliphilus metalliredigens
QYMF]
gi|149951602|gb|ABR50130.1| VRR_NUC domain protein [Alkaliphilus metalliredigens QYMF]
Length = 94
Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
++E +E++LVK K+ + K G PDR+++ P G +VE+K ++ Q
Sbjct: 1 MTEKYIEQKLVKAVKERGGIAPKFVSPGLDGVPDRIVLLPMGRMAFVELKAPGNKMRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFL 92
+ L V + E++ G L
Sbjct: 61 VKRKTQLEALGFLVYCIDGVEQIGGVL 87
>gi|256617083|ref|ZP_05473929.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|257088354|ref|ZP_05582715.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|256596610|gb|EEU15786.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256996384|gb|EEU83686.1| conserved hypothetical protein [Enterococcus faecalis D6]
Length = 95
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSR 58
+ E ++E+ LVK K + K G PDRL++ PNG +VE+K +
Sbjct: 1 MREKQVEQALVKAVKARGGICPKFVSPGLSGVPDRLVLMPNGKIAFVEVKAPK 53
>gi|154504836|ref|ZP_02041574.1| hypothetical protein RUMGNA_02346 [Ruminococcus gnavus ATCC
29149]
gi|153794719|gb|EDN77139.1| hypothetical protein RUMGNA_02346 [Ruminococcus gnavus ATCC
29149]
Length = 93
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ-- 65
E+ +E+ L + ++K + K G PDR+++ P+G +VE+K + Q
Sbjct: 3 ESTVERHLREEARKRKGMALKFVSPGMNGVPDRIVLMPDGKMAFVELKAPGKKPRPLQLK 62
Query: 66 -KRVIATLLLYHQKVQVLSSTEEVDGFL 92
KR++ L V V+ + E++ G L
Sbjct: 63 RKRMLERLGF---PVYVVDNIEQIGGIL 87
>gi|153800440|ref|ZP_01955026.1| conjugative coupling factor [Vibrio cholerae MZO-3]
gi|124124066|gb|EAY42809.1| conjugative coupling factor [Vibrio cholerae MZO-3]
Length = 590
Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 36 GCPDRLIITPNGA-------HFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEV 88
G P+ L++ A +F VE+K + + K+ +A LL Y++++Q +++ ++
Sbjct: 273 GGPEGLVVKAVTAWGEQVYPNFSVEIKRFTEKANTLAKQAMAMLLFYYERIQPVAANTDL 332
Query: 89 DGFLRMLE 96
+G L M E
Sbjct: 333 EGLLSMFE 340
>gi|304436364|ref|ZP_07396340.1| VRR-NUC domain protein [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304370633|gb|EFM24282.1| VRR-NUC domain protein [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 93
Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +EK L +K + + K G PDRL++ P G +VE+K + Q
Sbjct: 1 MREKDIEKELTARTKAMGGIAPKFTSPGFDGMPDRLVLLPRGRMEFVELKAPGRKPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFL 92
L KV V+ ++DG L
Sbjct: 61 LARHRLLRRLGFKVYVIDEINQIDGVL 87
>gi|325690427|gb|EGD32430.1| VRR-NUC domain protein [Streptococcus sanguinis SK115]
Length = 103
Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++E++L SKK L K G PDR+++ P G +VE+K R Q
Sbjct: 1 MREREIEEKLRVESKKRGGLAMKFVSPGLVGVPDRIVVLPQGRLGFVELKAPGERPRRIQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFL 92
R + L V VL E++ L
Sbjct: 61 VRRMEQLRKLGFLVYVLDDKEKIGEIL 87
Searching..................................................done
Results from round 2
>gi|320140664|gb|EFW32518.1| VRR-NUC domain protein [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320142764|gb|EFW34567.1| VRR-NUC domain protein [Staphylococcus aureus subsp. aureus
MRSA177]
Length = 116
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 55/95 (57%)
Query: 1 MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR 60
++ +Y+ E+ LEK LVK KL+ L K RG PDR+II P G ++VEMK +G+
Sbjct: 16 IQGEYMKESTLEKYLVKEISKLNGLCLKWVAPGTRGVPDRIIIMPEGKTYFVEMKQEKGK 75
Query: 61 LSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
L QK V KV VL + E+V+ F+RM+
Sbjct: 76 LHPLQKYVHRQFENRDHKVYVLWNKEQVNTFIRMV 110
>gi|87161853|ref|YP_494106.1| hypothetical protein SAUSA300_1409 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|161509686|ref|YP_001575345.1| hypothetical protein USA300HOU_1457 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|294848485|ref|ZP_06789231.1| hypothetical protein SKAG_00548 [Staphylococcus aureus A9754]
gi|300911908|ref|ZP_07129351.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus TCH70]
gi|87127827|gb|ABD22341.1| conserved hypothetical phage protein [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|160368495|gb|ABX29466.1| hypothetical bacteriophage protein [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|294824511|gb|EFG40934.1| hypothetical protein SKAG_00548 [Staphylococcus aureus A9754]
gi|300886154|gb|EFK81356.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus TCH70]
gi|315197729|gb|EFU28063.1| hypothetical bacteriophage protein [Staphylococcus aureus subsp.
aureus CGS01]
Length = 96
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 51/90 (56%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ LEK LVK KL+ L K RG PDR+II P G ++VEMK +G+L Q
Sbjct: 1 MKESTLEKYLVKEISKLNGLCLKWVAPGTRGVPDRIIIMPEGKTYFVEMKQEKGKLHPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
K V KV VL + E+V+ F+RM+
Sbjct: 61 KYVHRQFENRDHKVYVLWNKEQVNTFIRMV 90
>gi|49483701|ref|YP_040925.1| hypothetical protein SAR1524 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49485833|ref|YP_043054.1| hypothetical protein SAS0927 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|66395630|ref|YP_239996.1| ORF045 [Staphylococcus phage 3A]
gi|209363582|ref|YP_002268000.1| hypothetical protein phi2958PVL_gp30 [Staphylococcus phage
phi2958PVL]
gi|258445561|ref|ZP_05693743.1| gp33 [Staphylococcus aureus A6300]
gi|258455569|ref|ZP_05703526.1| conserved hypothetical protein [Staphylococcus aureus A5937]
gi|262052906|ref|ZP_06025089.1| hypothetical protein SA930_0247 [Staphylococcus aureus 930918-3]
gi|282921766|ref|ZP_06329483.1| conserved hypothetical protein [Staphylococcus aureus A9765]
gi|295428025|ref|ZP_06820657.1| predicted protein [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297591004|ref|ZP_06949642.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus MN8]
gi|49241830|emb|CAG40522.1| hypothetical phage protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49244276|emb|CAG42703.1| hypothetical phage protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|62635976|gb|AAX91087.1| ORF045 [Staphylococcus phage 3A]
gi|208973083|dbj|BAG74399.1| hypothetical protein [Staphylococcus phage phi2958PVL]
gi|257855608|gb|EEV78541.1| gp33 [Staphylococcus aureus A6300]
gi|257862257|gb|EEV85028.1| conserved hypothetical protein [Staphylococcus aureus A5937]
gi|259159213|gb|EEW44274.1| hypothetical protein SA930_0247 [Staphylococcus aureus 930918-3]
gi|282594028|gb|EFB99017.1| conserved hypothetical protein [Staphylococcus aureus A9765]
gi|295128383|gb|EFG58017.1| predicted protein [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297575890|gb|EFH94606.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus MN8]
gi|315128427|gb|EFT84435.1| hypothetical protein CGSSa03_13292 [Staphylococcus aureus subsp.
aureus CGS03]
Length = 96
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 50/90 (55%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ LEK LVK KL+ L K RG PDR+II P G ++VEMK +G+L Q
Sbjct: 1 MKESTLEKYLVKEITKLNGLCLKWVAPGTRGVPDRIIIMPEGKTYFVEMKQEKGKLHPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
K V V VL + E+V+ F+RM+
Sbjct: 61 KYVHRQFENRDHTVYVLWNKEQVNTFIRMV 90
>gi|66395557|ref|YP_239929.1| ORF053 [Staphylococcus phage 42E]
gi|215401141|ref|YP_002332396.1| hypothetical protein SauSIPLA35_gp33 [Staphylococcus phage
phiSauS-IPLA35]
gi|62636050|gb|AAX91161.1| ORF053 [Staphylococcus phage 42E]
gi|215260492|gb|ACJ64622.1| gp33 [Staphylococcus phage phiSauS-IPLA35]
Length = 96
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 50/90 (55%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ LEK LVK KL+ L K RG PDR+II P G ++VEMK +G+L Q
Sbjct: 1 MKESTLEKYLVKEITKLNGLCLKWVAPGTRGVPDRIIIMPEGKTYFVEMKQEKGKLHPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
K V V VL + E+V+ F+RM+
Sbjct: 61 KYVHRQFENRDHTVYVLWNKEQVNTFIRMV 90
>gi|29028642|ref|NP_803331.1| phi related protein [Staphylococcus phage phi 12]
gi|66395698|ref|YP_240069.1| ORF044 [Staphylococcus phage 47]
gi|88195256|ref|YP_500059.1| phi related protein [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|148267488|ref|YP_001246431.1| VRR-NUC [Staphylococcus aureus subsp. aureus JH9]
gi|150393542|ref|YP_001316217.1| VRR-NUC domain-containing protein [Staphylococcus aureus subsp.
aureus JH1]
gi|253315480|ref|ZP_04838693.1| VRR-NUC domain-containing protein [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|258420305|ref|ZP_05683252.1| VRR-NUC domain-containing protein [Staphylococcus aureus A9719]
gi|258427144|ref|ZP_05688066.1| VRR-NUC domain-containing protein [Staphylococcus aureus A9299]
gi|258448844|ref|ZP_05696954.1| VRR-NUC domain-containing protein [Staphylococcus aureus A6224]
gi|282905865|ref|ZP_06313720.1| phi family protein [Staphylococcus aureus subsp. aureus Btn1260]
gi|282919230|ref|ZP_06326965.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus C427]
gi|282927342|ref|ZP_06334960.1| phi protein [Staphylococcus aureus A10102]
gi|284024516|ref|ZP_06378914.1| VRR-NUC domain-containing protein [Staphylococcus aureus subsp.
aureus 132]
gi|295407566|ref|ZP_06817359.1| phage protein [Staphylococcus aureus A8819]
gi|296276323|ref|ZP_06858830.1| VRR-NUC domain-containing protein [Staphylococcus aureus subsp.
aureus MR1]
gi|297207822|ref|ZP_06924256.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297246596|ref|ZP_06930429.1| phi like protein [Staphylococcus aureus A8796]
gi|18920566|gb|AAL82306.1| phi related protein [Staphylococcus phage phi 12]
gi|62636122|gb|AAX91233.1| ORF044 [Staphylococcus phage 47]
gi|87202814|gb|ABD30624.1| phi related protein [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|147740557|gb|ABQ48855.1| VRR-NUC [Staphylococcus aureus subsp. aureus JH9]
gi|149945994|gb|ABR51930.1| VRR-NUC domain protein [Staphylococcus aureus subsp. aureus JH1]
gi|257843730|gb|EEV68132.1| VRR-NUC domain-containing protein [Staphylococcus aureus A9719]
gi|257849922|gb|EEV73881.1| VRR-NUC domain-containing protein [Staphylococcus aureus A9299]
gi|257857881|gb|EEV80772.1| VRR-NUC domain-containing protein [Staphylococcus aureus A6224]
gi|282317040|gb|EFB47414.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus C427]
gi|282331157|gb|EFB60671.1| phi family protein [Staphylococcus aureus subsp. aureus Btn1260]
gi|282590666|gb|EFB95742.1| phi protein [Staphylococcus aureus A10102]
gi|283469595|emb|CAQ48806.1| phi related protein [Staphylococcus aureus subsp. aureus ST398]
gi|283470736|emb|CAQ49947.1| phi related protein [Staphylococcus aureus subsp. aureus ST398]
gi|294967585|gb|EFG43621.1| phage protein [Staphylococcus aureus A8819]
gi|296887538|gb|EFH26437.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297176554|gb|EFH35819.1| phi like protein [Staphylococcus aureus A8796]
gi|298693628|gb|ADI96850.1| hypothetical phage protein [Staphylococcus aureus subsp. aureus
ED133]
gi|302333126|gb|ADL23319.1| VRR-NUC domain [Staphylococcus aureus subsp. aureus JKD6159]
gi|312438076|gb|ADQ77147.1| phi phage protein [Staphylococcus aureus subsp. aureus TCH60]
gi|323438428|gb|EGA96183.1| hypothetical protein SAO11_2724 [Staphylococcus aureus O11]
gi|323441316|gb|EGA98981.1| hypothetical protein SAO46_2726 [Staphylococcus aureus O46]
gi|329729402|gb|EGG65807.1| VRR-NUC domain protein [Staphylococcus aureus subsp. aureus
21189]
gi|329730601|gb|EGG66986.1| VRR-NUC domain protein [Staphylococcus aureus subsp. aureus
21193]
Length = 96
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 51/90 (56%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ LEK LVK KL+ L K RG PDR+II P G ++VEMK +G+L Q
Sbjct: 1 MKESTLEKYLVKEITKLNGLCLKWVAPGTRGVPDRIIIMPEGKTYFVEMKQEKGKLHPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
K V KV VL + E+V+ F+RM+
Sbjct: 61 KYVHRQFENRDHKVYVLWNKEQVNTFIRMV 90
>gi|257428239|ref|ZP_05604637.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257432447|ref|ZP_05608810.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus E1410]
gi|257275080|gb|EEV06567.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257283326|gb|EEV13458.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus E1410]
Length = 96
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 50/90 (55%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ LEK LVK KL+ L K RG PDR+II P G F+VEMK +G+L Q
Sbjct: 1 MKESTLEKYLVKEITKLNGLCLKWVAPGTRGVPDRIIIMPEGKTFFVEMKQEKGKLHPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
K V V VL + E+V+ F+RM+
Sbjct: 61 KYVHRQFENRDHTVYVLWNKEQVNTFIRMV 90
>gi|282911094|ref|ZP_06318896.1| gp33 [Staphylococcus aureus subsp. aureus WBG10049]
gi|282324789|gb|EFB55099.1| gp33 [Staphylococcus aureus subsp. aureus WBG10049]
Length = 96
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 50/90 (55%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ LEK LVK KL+ L K RG PDR+II P G ++VEMK +G+L Q
Sbjct: 1 MKESTLEKYLVKEITKLNGLCLKWVAPGTRGVPDRIIIMPEGKTYFVEMKQEKGKLHPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
K V V VL + E+VD F+RM+
Sbjct: 61 KYVHRQFENRDHTVYVLWNKEQVDEFIRMV 90
>gi|156603989|ref|YP_001429935.1| hypothetical protein SPTP3102_gp40 [Staphylococcus phage tp310-2]
gi|154818075|gb|ABS87502.1| hypothetical protein [Staphylococcus phage tp310-2]
Length = 96
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 50/90 (55%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E LEK LVK KL+ L K RG PDR+II P G ++VEMK +G+L Q
Sbjct: 1 MKETTLEKYLVKEITKLNGLCLKWVAPGTRGVPDRIIIMPEGKTYFVEMKQEKGKLHPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
K V +V VL + E+V+ F+RM+
Sbjct: 61 KYVHRQFENRDHRVYVLWNKEQVNTFIRMV 90
>gi|254781194|ref|YP_003065607.1| hypothetical protein CLIBASIA_05505 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040871|gb|ACT57667.1| hypothetical protein CLIBASIA_05505 [Candidatus Liberibacter
asiaticus str. psy62]
gi|317120756|gb|ADV02577.1| endonuclease [Candidatus Liberibacter asiaticus]
Length = 98
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR 60
MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR
Sbjct: 1 MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR 60
Query: 61 LSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLECY 98
LSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLECY
Sbjct: 61 LSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLECY 98
>gi|70726781|ref|YP_253695.1| hypothetical protein SH1780 [Staphylococcus haemolyticus
JCSC1435]
gi|68447505|dbj|BAE05089.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 92
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+K+E LV+ KKL L K RG PDR++I P G ++VEMK GR+ Q
Sbjct: 1 MRESKIESYLVREVKKLKGLCLKWVSPGTRGVPDRIVIMPKGKTYYVEMKQPNGRVDPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
+ + L +V L + E+V+ F++ +
Sbjct: 61 QYMHKQLTNRDHQVFTLWTKEQVNEFIKKV 90
>gi|66395482|ref|YP_239851.1| ORF037 [Staphylococcus phage 2638A]
gi|62635909|gb|AAX91020.1| ORF037 [Staphylococcus phage 2638A]
Length = 98
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ +EK LVK KK L K RG PDR++I P G ++VEMK +GR Q
Sbjct: 1 MRESNIEKYLVKEVKKKKGLCLKWVAPGTRGVPDRIVIMPKGKTYYVEMKQPKGRTDPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
K + L +V L ++VD F++ +
Sbjct: 61 KYMHKQLEDRGHQVFTLWDKKQVDEFIKKV 90
>gi|255957617|dbj|BAH96667.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957627|dbj|BAH96675.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
Length = 103
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 52/93 (55%), Positives = 63/93 (67%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y +E +EKRLV G+KKLDC V K F+ +RGCPDRLIITPNG +W+E+K GRLS+
Sbjct: 8 YQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQ 67
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
Q I L Q+V+VL S EEVD FL L C
Sbjct: 68 QMSEIEELRRRGQRVKVLVSMEEVDNFLEELAC 100
>gi|255957592|dbj|BAH96647.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
Length = 103
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 52/93 (55%), Positives = 63/93 (67%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y +E +EKRLV G+KKLDC V K F+ +RGCPDRLIITPNG +W+E+K GRLS+
Sbjct: 8 YQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGRLWWIEVKKPTGRLSHQ 67
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
Q I L Q+V+VL S EEVD FL L C
Sbjct: 68 QMSEIEELRRRGQRVKVLVSMEEVDNFLEELAC 100
>gi|255957612|dbj|BAH96663.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
Length = 103
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 52/93 (55%), Positives = 63/93 (67%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y +E +EKRLV G+KKLDC V K F+ +RGCPDRLIITPNG +W+E+K GRLS+
Sbjct: 8 YQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQ 67
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
Q I L Q+V+VL S EEVD FL L C
Sbjct: 68 QMSEIEELRRRGQRVKVLISMEEVDNFLEELAC 100
>gi|254780128|ref|YP_003064541.1| VRR-NUC domain-containing protein [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039805|gb|ACT56601.1| VRR-NUC domain-containing protein [Candidatus Liberibacter
asiaticus str. psy62]
gi|317120699|gb|ADV02522.1| endonuclease [Liberibacter phage SC1]
gi|317120843|gb|ADV02664.1| endonuclease [Liberibacter phage SC1]
Length = 103
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 52/93 (55%), Positives = 63/93 (67%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y +E +EKRLV G+KKLDC V K F+ +RGCPDRLIITPNG +W+E+K GRLS+
Sbjct: 8 YQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQ 67
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
Q I L Q+V+VL S EEVD FL L C
Sbjct: 68 QMSEIEELRRRGQRVKVLVSMEEVDNFLEELAC 100
>gi|255957557|dbj|BAH96619.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|317120742|gb|ADV02564.1| endonuclease [Liberibacter phage SC2]
gi|317120803|gb|ADV02624.1| endonuclease [Liberibacter phage SC2]
Length = 103
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 52/93 (55%), Positives = 63/93 (67%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y +E +EKRLV G+KKLDC V K F+ +RGCPDRLIITPNG +W+E+K GRLS+
Sbjct: 8 YQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQ 67
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
Q I L Q+V+VL S EEVD FL L C
Sbjct: 68 QMSEIEELRRRGQRVKVLISMEEVDNFLEELAC 100
>gi|255957562|dbj|BAH96623.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957567|dbj|BAH96627.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957572|dbj|BAH96631.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957577|dbj|BAH96635.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957582|dbj|BAH96639.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957587|dbj|BAH96643.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957597|dbj|BAH96651.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957607|dbj|BAH96659.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
Length = 103
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 52/93 (55%), Positives = 64/93 (68%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y +E +EKRLV G++KLDC V K F+ +RGCPDRLIITPNG +W+E+K GRLS+
Sbjct: 8 YQTEKDVEKRLVTGAEKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQ 67
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
Q I LL Q+V+VL S EEVD FL L C
Sbjct: 68 QMSEIEELLRRGQRVKVLVSMEEVDNFLEELAC 100
>gi|255957622|dbj|BAH96671.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957652|dbj|BAH96695.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957657|dbj|BAH96699.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957672|dbj|BAH96711.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
Length = 103
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 51/93 (54%), Positives = 63/93 (67%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y +E +EKRLV G++KLDC V K F+ +RGCPDRLIITPNG +W+E+K GRLS+
Sbjct: 8 YQTEKDVEKRLVTGAEKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQ 67
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
Q I L Q+V+VL S EEVD FL L C
Sbjct: 68 QMSEIEELRRRGQRVKVLVSMEEVDNFLEELAC 100
>gi|255957602|dbj|BAH96655.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957632|dbj|BAH96679.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957637|dbj|BAH96683.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957642|dbj|BAH96687.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957647|dbj|BAH96691.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957677|dbj|BAH96715.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957682|dbj|BAH96719.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957687|dbj|BAH96723.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
Length = 103
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 52/93 (55%), Positives = 63/93 (67%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y +E +EKRLV G+KKLDC V K F+ +RGCPDRLIITPNG +W+E+K GRLS+
Sbjct: 8 YQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQ 67
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
Q I L Q+V+VL S EEVD FL L C
Sbjct: 68 QMSEIEELRRRGQRVKVLISIEEVDNFLEELAC 100
>gi|255957662|dbj|BAH96703.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
gi|255957667|dbj|BAH96707.1| VRR-NUC domain protein [Candidatus Liberibacter asiaticus]
Length = 103
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 51/93 (54%), Positives = 63/93 (67%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y +E +EKRLV G++KLDC V K F+ +RGCPDRLIITPNG +W+E+K GRLS+
Sbjct: 8 YQTEKDVEKRLVTGAEKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQ 67
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
Q I L Q+V+VL S EEVD FL L C
Sbjct: 68 QMSEIEELRRRGQRVKVLVSIEEVDNFLEELAC 100
>gi|225405818|ref|ZP_03761007.1| hypothetical protein CLOSTASPAR_05039 [Clostridium asparagiforme
DSM 15981]
gi|225042658|gb|EEG52904.1| hypothetical protein CLOSTASPAR_05039 [Clostridium asparagiforme
DSM 15981]
Length = 96
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 45/89 (50%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E++LV+G K+L FK G PDR++ P VE+KT G+LS Q
Sbjct: 1 MREKDIEQKLVQGVKRLGGRAFKWTSPGNDGVPDRIVFLPGRPPVLVELKTDTGKLSALQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRM 94
+ I L Q V+VL ++V FL
Sbjct: 61 RIQIGRLRDLGQDVRVLYGLDQVLEFLNE 89
>gi|315121968|ref|YP_004062457.1| VRR-NUC domain-containing protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|315122936|ref|YP_004063425.1| VRR-NUC domain-containing protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495370|gb|ADR51969.1| VRR-NUC domain-containing protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496338|gb|ADR52937.1| VRR-NUC domain-containing protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 101
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 52/92 (56%), Positives = 64/92 (69%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
SE ++EKRLVKG ++LDC V K F++ RGCPDRLIITP G +W+E+K GRLS Q
Sbjct: 8 QSEHEIEKRLVKGVQQLDCWVRKASFVSHRGCPDRLIITPQGRLWWIEVKQPSGRLSPQQ 67
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
K I LL Q+V+VL S EEVD FL+ L C
Sbjct: 68 KIEIEELLRRGQRVKVLFSAEEVDNFLKELAC 99
>gi|253581728|ref|ZP_04858952.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
gi|251836077|gb|EES64614.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
Length = 97
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++EK L + KKL + +K G PDRL++ P G +VE+K G+ + Q
Sbjct: 1 MREKEIEKYLREEIKKLGGIAYKFTSPGNSGVPDRLVLLPCGVVAFVELKAPGGKTTAIQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
R IA + V ++ S +VD F++ ++
Sbjct: 61 DRQIARIQKLDFDVYIVDSKFKVDCFIQDMQ 91
>gi|312897718|ref|ZP_07757134.1| VRR-NUC domain protein [Megasphaera micronuciformis F0359]
gi|310621102|gb|EFQ04646.1| VRR-NUC domain protein [Megasphaera micronuciformis F0359]
Length = 111
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +EK+LV G KKL +K G PDR++I P+G+ ++E+KT++G+LS Q
Sbjct: 16 MLERDIEKKLVAGVKKLGGRAYKFVSPGNIGVPDRIVIWPDGSIEFIELKTAKGQLSKTQ 75
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRM 94
IA L V +L + V+ +L +
Sbjct: 76 ATQIARLQAMECNVHILYGMDAVNAYLNV 104
>gi|266623805|ref|ZP_06116740.1| putative protein p44 [Clostridium hathewayi DSM 13479]
gi|288864377|gb|EFC96675.1| putative protein p44 [Clostridium hathewayi DSM 13479]
Length = 111
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 43/89 (48%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +EK LV KKL +K G PDR++I P +VE+KT +GRLS Q
Sbjct: 1 MLEKDIEKILVNEVKKLGGRAYKWVSPGNDGVPDRIVILPGLRPVFVELKTEKGRLSAIQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRM 94
+ I L Q V VL +V FL
Sbjct: 61 RVQIERLKKMKQDVSVLYGEPQVRDFLEE 89
>gi|258646423|ref|ZP_05733892.1| putative protein p44 [Dialister invisus DSM 15470]
gi|260403826|gb|EEW97373.1| putative protein p44 [Dialister invisus DSM 15470]
Length = 105
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 48/96 (50%)
Query: 1 MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR 60
M+ SE EK LV KKL +K G PDR+II P G +VEMK+ G
Sbjct: 1 MQVVKHSERDAEKLLVSKIKKLGGRAYKFTSPGSAGVPDRIIILPGGYVEFVEMKSETGM 60
Query: 61 LSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
LS QK I+ L V+VL ++VD ++ ++
Sbjct: 61 LSVLQKICISHLRSLGCHVEVLYGAKDVDTYVTRVK 96
>gi|237738631|ref|ZP_04569112.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
gi|229424114|gb|EEO39161.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
Length = 102
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR--LSNA 64
SE ++E LVK K + L K G PDR++I P G ++VE+K R LS
Sbjct: 4 SEREIEAYLVKSIKNKNGLCMKWTSPGNAGVPDRIVIVPGGDVYFVELKAEGKREDLSPL 63
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
Q+ I L + +V++S +EVD F+ +
Sbjct: 64 QRNFINKLKNLNCDARVIASFKEVDEFIEEV 94
>gi|211731860|gb|ACJ10158.1| conserved hypothetical protein [Bacteriophage APSE-3]
Length = 93
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 40/81 (49%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +EK LV +K+ + +K +RG PDRL+ PNG +VE K + + Q
Sbjct: 4 IREDSIEKHLVSEVQKIGGIAYKFVSPGRRGVPDRLVALPNGKIIFVECKAPGEKPTPYQ 63
Query: 66 KRVIATLLLYHQKVQVLSSTE 86
R A L +V VL S +
Sbjct: 64 LREHARLFALGHQVIVLDSQD 84
>gi|9633591|ref|NP_051005.1| hypothetical protein APSE-1_44 [Acyrthosiphon pisum bacteriophage
APSE-1]
gi|9910954|sp|Q9T1Q4|VP44_BPAPS RecName: Full=Putative nuclease p44
gi|6118039|gb|AAF03987.1|AF157835_44 P44 [Endosymbiont phage APSE-1]
Length = 93
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 40/81 (49%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +EK LV +K+ + +K +RG PDRL+ PNG +VE K + + Q
Sbjct: 4 IREDSIEKHLVSEVRKIGGIAYKFVSPGRRGVPDRLVALPNGKIIFVECKAPGEKPTPYQ 63
Query: 66 KRVIATLLLYHQKVQVLSSTE 86
R A L +V VL S +
Sbjct: 64 LREHARLFALGHQVIVLDSQD 84
>gi|212499740|ref|YP_002308548.1| hypothetical protein APSE235 [Bacteriophage APSE-2]
gi|238898731|ref|YP_002924412.1| APSE-2 prophage; hypothetical protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|75906054|gb|ABA29400.1| conserved hypothetical protein [Bacteriophage APSE-2]
gi|211731709|gb|ACJ10197.1| conserved hypothetical protein [Bacteriophage APSE-2]
gi|211731854|gb|ACJ10153.1| conserved hypothetical protein [Bacteriophage APSE-4]
gi|229466490|gb|ACQ68264.1| APSE-2 prophage; conserved hypothetical protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 94
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +EK LV+ +K+ + +K +RG PDRL+ PNG +VE K + + Q
Sbjct: 4 IREDSIEKHLVREVQKIGGIAYKFVSPGRRGVPDRLVALPNGKIIFVECKAPGEKPTPYQ 63
Query: 66 KRVIATLLLYHQKVQVLSSTE 86
R A L +V VL S +
Sbjct: 64 LREHARLFALGHQVIVLDSQD 84
>gi|211731845|gb|ACJ10148.1| conserved hypothetical protein [Bacteriophage APSE-5]
Length = 93
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +EK LV+ +K+ + +K +RG PDRL+ PNG +VE K + + Q
Sbjct: 4 IREDSIEKHLVREVQKIGGIAYKFVSPGRRGVPDRLVALPNGKIIFVECKAPGEKPTPYQ 63
Query: 66 KRVIATLLLYHQKVQVLSSTE 86
R A L +V VL S +
Sbjct: 64 LREHARLFALGHQVIVLDSQD 84
>gi|284007834|emb|CBA73722.1| conserved hypothetical phage protein [Arsenophonus nasoniae]
Length = 93
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +EK LV+ +K+ + +K +RG PDRL+ PNG +VE K + + Q
Sbjct: 4 IREESIEKHLVREVQKIGGIAYKFVSPGRRGVPDRLVALPNGNIIFVECKAPGEKPTPYQ 63
Query: 66 KRVIATLLLYHQKVQVLSSTE 86
R A L +V VL S +
Sbjct: 64 LREHARLFALGHQVIVLDSQD 84
>gi|168179445|ref|ZP_02614109.1| phage associated protein [Clostridium botulinum NCTC 2916]
gi|182669696|gb|EDT81672.1| phage associated protein [Clostridium botulinum NCTC 2916]
Length = 91
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ +EKRL K +KL K G PDR+++ P G +VE+K + Q
Sbjct: 1 MLESSIEKRLKKEIEKLSGKALKFVSPGVSGVPDRIVLLPQGRIIFVELKAPGKKPRPIQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
K I L +V+++ S E ++ F+R ++
Sbjct: 61 KYRIKELTALGFRVEIIDSIEGINNFIREIK 91
>gi|269120030|ref|YP_003308207.1| VRR-NUC domain protein [Sebaldella termitidis ATCC 33386]
gi|268613908|gb|ACZ08276.1| VRR-NUC domain protein [Sebaldella termitidis ATCC 33386]
Length = 110
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
L E +EK L KK+ + +K G PDRL++ P F+VE+K + Q
Sbjct: 6 LKEKDIEKYLRDEIKKVGGIAYKFVSPGNAGVPDRLVLLPGRWSFFVELKAPGKKTRAVQ 65
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
R I + V ++ S ++VD ++M++
Sbjct: 66 DRQIRKIRNLDFSVLIIDSKKQVDDLVKMIK 96
>gi|304406780|ref|ZP_07388435.1| VRR-NUC domain protein [Paenibacillus curdlanolyticus YK9]
gi|304344313|gb|EFM10152.1| VRR-NUC domain protein [Paenibacillus curdlanolyticus YK9]
Length = 102
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 37/91 (40%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E L + + +K G PDR+++ P G +VE+K + + Q
Sbjct: 1 MRERDIETYLREKVRAAGGKAYKWTSPGNAGVPDRIVMLPGGRVAFVELKAPGKKATPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
T+ V V+ S D F+ ++
Sbjct: 61 VNQQRTISNLGLPVTVIDSKAGADAFISRMQ 91
>gi|227872573|ref|ZP_03990909.1| VRR-NUC domain protein [Oribacterium sinus F0268]
gi|227841574|gb|EEJ51868.1| VRR-NUC domain protein [Oribacterium sinus F0268]
Length = 103
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 48/90 (53%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
E K+EK +V+ L C +K N RG PDRL IT G F+ E+KT +GRLS+ Q+
Sbjct: 4 QEKKVEKAMVRMLWNLGCESYKFVSPNCRGVPDRLFITEEGKVFFAELKTIKGRLSSLQE 63
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
I L Q+V V+ E V F+ +
Sbjct: 64 NQIKKLKALKQEVYVIYGMEGVRKFVEDFQ 93
>gi|153940485|ref|YP_001391669.1| VRR-NUC domain-containing protein [Clostridium botulinum F str.
Langeland]
gi|152936381|gb|ABS41879.1| VRR-NUC domain protein [Clostridium botulinum F str. Langeland]
Length = 93
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 44/88 (50%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+++EKRL K +KL K G PDR+++ P G +VE+K + Q
Sbjct: 1 MEESRIEKRLKKEIEKLGGKALKFVSPGVSGVPDRIVLLPEGRIIFVELKAPGKKPRPIQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLR 93
K I L +V+++ S E ++ F+
Sbjct: 61 KYRIKELRSLGFRVEIIDSIERINNFVE 88
>gi|170023448|ref|YP_001719953.1| VRR-NUC domain-containing protein [Yersinia pseudotuberculosis
YPIII]
gi|169749982|gb|ACA67500.1| VRR-NUC domain protein [Yersinia pseudotuberculosis YPIII]
Length = 89
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 38/82 (46%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y+ E +E LVK KK + +K +R PDRL++ P G +VE K + + A
Sbjct: 3 YIREDSIEAHLVKEVKKAGGIAYKFISPGRRSVPDRLVLLPGGNVIFVECKAPGEKPTAA 62
Query: 65 QKRVIATLLLYHQKVQVLSSTE 86
Q R + V VL S +
Sbjct: 63 QLREHEKIRALGFAVWVLDSKD 84
>gi|167746057|ref|ZP_02418184.1| hypothetical protein ANACAC_00752 [Anaerostipes caccae DSM 14662]
gi|167654572|gb|EDR98701.1| hypothetical protein ANACAC_00752 [Anaerostipes caccae DSM 14662]
Length = 93
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 43/91 (47%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++EKRLV KK + K G PDR+I+ P G + E+K + Q
Sbjct: 1 MREKEIEKRLVAEVKKNGGICPKFVSPGYAGMPDRIILLPKGKIAFAELKAPGQKPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
L+ +V V+ TE++ G +R ++
Sbjct: 61 AARHKILMGLGFRVYVIDGTEQIGGVIREIQ 91
>gi|48697220|ref|YP_024950.1| hypothetical protein BcepC6B_gp30 [Burkholderia phage BcepC6B]
gi|47779026|gb|AAT38389.1| gp30 [Burkholderia phage BcepC6B]
Length = 280
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 38/87 (43%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E LV + +K + PDR++I P ++VE+K + + Q
Sbjct: 16 MLEKTVETYLVDRVRAAGGDAYKFSSPARVSVPDRIVIFPPARVYFVELKRPGNKPTKGQ 75
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFL 92
R L V+V+ S E VD F+
Sbjct: 76 LREHERLRALGCDVRVIDSREAVDAFV 102
>gi|332160955|ref|YP_004297532.1| VRR-NUC domain protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325665185|gb|ADZ41829.1| VRR-NUC domain protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862110|emb|CBX72274.1| putative protein p44 [Yersinia enterocolitica W22703]
Length = 90
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 38/81 (46%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y E +E LVK KK+ + +K +R PDRL++ P G +VE K + + A
Sbjct: 3 YNREDSIEDHLVKEVKKVGGIAYKFISPGRRSVPDRLVLLPGGKVIFVECKAPGEKPTAA 62
Query: 65 QKRVIATLLLYHQKVQVLSST 85
Q R L V+VL S
Sbjct: 63 QLREHEKLRALGFTVRVLDSK 83
>gi|332800347|ref|YP_004461846.1| VRR-NUC domain-containing protein [Tepidanaerobacter sp. Re1]
gi|332698082|gb|AEE92539.1| VRR-NUC domain-containing protein [Tepidanaerobacter sp. Re1]
Length = 92
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 41/91 (45%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++E +L + K+ K G PDRL++ P G+ +VE+K +L Q
Sbjct: 1 MREKQIEAKLKREIKRRGGAALKFTSPGIAGVPDRLVLLPTGSVVFVELKAPGKKLRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ L KV VL S VD F+ +
Sbjct: 61 LKRKEQLESLGFKVYVLDSYAAVDAFIEEVA 91
>gi|302876788|ref|YP_003845421.1| VRR-NUC domain-containing protein [Clostridium cellulovorans
743B]
gi|307687469|ref|ZP_07629915.1| VRR-NUC domain-containing protein [Clostridium cellulovorans
743B]
gi|302579645|gb|ADL53657.1| VRR-NUC domain-containing protein [Clostridium cellulovorans
743B]
Length = 92
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 39/90 (43%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++EK+L+ KK + K G PDR+++ P G +VE+K + Q
Sbjct: 1 MREKQIEKKLITEVKKRGGICPKWVSPGFDGVPDRIVLLPGGKFAFVEVKAPGEKPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
L +V VL ++ G L +
Sbjct: 61 VSRHKLLRRLGFRVYVLDDMSQIGGILDEI 90
>gi|212712314|ref|ZP_03320442.1| hypothetical protein PROVALCAL_03402 [Providencia alcalifaciens
DSM 30120]
gi|212685060|gb|EEB44588.1| hypothetical protein PROVALCAL_03402 [Providencia alcalifaciens
DSM 30120]
Length = 89
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 39/81 (48%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E+ LV KK+ + +K +RG PDR+++ P+G +VE K + Q
Sbjct: 4 IREDVIERHLVYKVKKVGGIAYKFTSPGRRGVPDRIVLLPHGKIIFVECKAPGEKPRPDQ 63
Query: 66 KRVIATLLLYHQKVQVLSSTE 86
R A L V VL S +
Sbjct: 64 LREHARLFALGFHVVVLDSKD 84
>gi|302873664|ref|YP_003842297.1| VRR-NUC domain-containing protein [Clostridium cellulovorans
743B]
gi|307686612|ref|ZP_07629058.1| VRR-NUC domain-containing protein [Clostridium cellulovorans
743B]
gi|302576521|gb|ADL50533.1| VRR-NUC domain-containing protein [Clostridium cellulovorans
743B]
Length = 92
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 44/90 (48%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+K+EK L KK + K G PDRL++ PNG +VE+K + + Q
Sbjct: 1 MRESKIEKALTIELKKRGGMALKFVSPGMAGVPDRLVLIPNGEVIFVELKAPGKTMRHLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
+ + L +V V+ S VD F+R +
Sbjct: 61 LKRKSQLENLGFRVYVIDSLGGVDSFVREV 90
>gi|41179403|ref|NP_958712.1| Bbp43 [Bordetella phage BPP-1]
gi|45569536|ref|NP_996605.1| hypothetical protein BMP-1p42 [Bordetella phage BMP-1]
gi|45580787|ref|NP_996653.1| hypothetical protein BIP-1p42 [Bordetella phage BIP-1]
gi|40950142|gb|AAR97708.1| Bbp43 [Bordetella phage BPP-1]
Length = 87
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ +EK LV+ +KL V K ++I + G PDRL++ P+ WVE+K + Q
Sbjct: 1 MRESDIEKYLVERVRKLGGEVRKVRWIGRNGAPDRLVMLPD-RTVWVELKAPGEKCRPHQ 59
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFL 92
R + Q+V V+ S E VD L
Sbjct: 60 IREHERMRRMGQRVAVVDSHEGVDEVL 86
>gi|188494825|ref|ZP_03002095.1| phage associated protein [Escherichia coli 53638]
gi|188490024|gb|EDU65127.1| phage associated protein [Escherichia coli 53638]
gi|323173127|gb|EFZ58758.1| VRR-NUC domain protein [Escherichia coli LT-68]
gi|332088067|gb|EGI93192.1| VRR-NUC domain protein [Shigella boydii 5216-82]
Length = 98
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 36/85 (42%)
Query: 1 MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR 60
++ Y E+ +EK LV KK + FK R PDR+++ P G +VE K+
Sbjct: 8 IQMAYERESLIEKHLVAEVKKAGGVAFKFVSPGHRSVPDRIVLLPGGRIVFVECKSPGKP 67
Query: 61 LSNAQKRVIATLLLYHQKVQVLSST 85
Q R L V VL S
Sbjct: 68 PRPDQLREHERLRKLGFTVVVLDSK 92
>gi|268610657|ref|ZP_06144384.1| VRR_NUC domain-containing protein [Ruminococcus flavefaciens
FD-1]
Length = 93
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++E +LVK K + +K G PDR+++ +G +VE+K + Q
Sbjct: 1 MRENEIETKLVKAVKARGGVCWKFVSPGTAGVPDRIVLMQSGRIAFVEVKAPGEKPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ I L KV VL E++ G + ++
Sbjct: 61 RVRIKLLRRLGFKVYVLDGAEQIGGIIDEIQ 91
>gi|331648303|ref|ZP_08349392.1| putative protein p44 [Escherichia coli M605]
gi|331042852|gb|EGI14993.1| putative protein p44 [Escherichia coli M605]
Length = 98
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 34/81 (41%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y E+ +EK LV KK + FK +R PDR+++ P G +VE K
Sbjct: 4 YERESLIEKHLVAEVKKAGGVAFKFVSPGRRSVPDRIVLLPGGRIVFVECKAPGKPPRPD 63
Query: 65 QKRVIATLLLYHQKVQVLSST 85
Q R L V VL S
Sbjct: 64 QLREHERLRALGFTVVVLDSK 84
>gi|325478671|gb|EGC81782.1| VRR-NUC domain protein [Anaerococcus prevotii ACS-065-V-Col13]
Length = 93
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 40/90 (44%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++EK LV K L K + G PDR+I+ P G +VE K G Q
Sbjct: 1 MLENEIEKALVDKVKPHGGLCLKFTSPSMTGIPDRIILLPKGKIGFVETKRPGGEPRPIQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
KR I KV VL S E +D + +
Sbjct: 61 KRRIRQFKNLGFKVYVLDSKENIDEIINRI 90
>gi|313895645|ref|ZP_07829201.1| conserved hypothetical protein [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312975771|gb|EFR41230.1| conserved hypothetical protein [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 122
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 39/94 (41%)
Query: 2 RTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRL 61
R + E+ LEK K L K G PDRL++ P G ++E+K +
Sbjct: 29 RGISMRESDLEKFTRLYIKLHGGLALKFISPGCAGVPDRLVLMPGGKMCFMELKAPGRKP 88
Query: 62 SNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
Q R I L KV V+ EE+ G + L
Sbjct: 89 RPLQVRRIEQLRALGFKVYVVDGKEEIGGIINAL 122
>gi|331654017|ref|ZP_08355018.1| putative protein p44 [Escherichia coli M718]
gi|331048866|gb|EGI20942.1| putative protein p44 [Escherichia coli M718]
Length = 98
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 36/85 (42%)
Query: 1 MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR 60
++ Y E+ +EK LV KK + FK R PDR+++ P G +VE K+
Sbjct: 8 IQMAYERESLIEKHLVAEVKKAGGVAFKFVSPGHRSVPDRIVLLPGGRIVFVECKSPGKP 67
Query: 61 LSNAQKRVIATLLLYHQKVQVLSST 85
Q R L V VL S
Sbjct: 68 PRPDQLREHERLRKLGFTVVVLDSK 92
>gi|191174025|ref|ZP_03035542.1| VRR_NUC domain protein [Escherichia coli F11]
gi|190905716|gb|EDV65338.1| VRR_NUC domain protein [Escherichia coli F11]
gi|324014346|gb|EGB83565.1| VRR-NUC domain protein [Escherichia coli MS 60-1]
Length = 98
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 34/81 (41%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y E+ +EK LV KK + FK +R PDR+++ P G +VE K
Sbjct: 4 YERESLIEKHLVAEVKKAGGVAFKFVSPGRRSVPDRIVLLPGGRIVFVECKAPSKPPRPD 63
Query: 65 QKRVIATLLLYHQKVQVLSST 85
Q R L V VL S
Sbjct: 64 QLREHERLRALGFTVVVLDSK 84
>gi|295096882|emb|CBK85972.1| VRR-NUC domain [Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 91
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 34/81 (41%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y E+ +EK LV KK + +K +R PDR+++ P G +VE K
Sbjct: 3 YERESLIEKHLVAEVKKAGGVAYKFVSPGRRSVPDRIVLLPGGRLVFVECKAPGKPPRAD 62
Query: 65 QKRVIATLLLYHQKVQVLSST 85
Q R L V VL S
Sbjct: 63 QLREHERLRALGFTVVVLDSK 83
>gi|194429282|ref|ZP_03061809.1| VRR-NUC domain protein [Escherichia coli B171]
gi|218555137|ref|YP_002388050.1| hypothetical protein ECIAI1_2667 [Escherichia coli IAI1]
gi|194412690|gb|EDX28985.1| VRR-NUC domain protein [Escherichia coli B171]
gi|218361905|emb|CAQ99505.1| conserved hypothetical protein from bacteriophage origin
[Escherichia coli IAI1]
gi|323159214|gb|EFZ45204.1| VRR-NUC domain protein [Escherichia coli E128010]
Length = 95
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 34/81 (41%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y E +EK LV KK + FK +R PDR+++ P G +VE K+
Sbjct: 3 YERENLIEKHLVAEVKKAGGVAFKFVSPGRRSVPDRIVLLPGGRIIFVECKSPGKPPRPD 62
Query: 65 QKRVIATLLLYHQKVQVLSST 85
Q R L V VL S
Sbjct: 63 QLREHGRLRALGFTVVVLDSK 83
>gi|293401138|ref|ZP_06645282.1| hypothetical protein HMPREF0863_01422 [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291305264|gb|EFE46509.1| hypothetical protein HMPREF0863_01422 [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 95
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 40/90 (44%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E +L +K + K + RG PDRL++ P+G +VE+K Q
Sbjct: 3 MLEKNIENKLTTAVEKAGGIAPKFVSPSLRGMPDRLVLLPDGVFAFVELKAPGESPRPLQ 62
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
+ L KV V+ S + + G L L
Sbjct: 63 RARHRKLRSLGFKVYVIDSIDGIGGMLHEL 92
>gi|260845242|ref|YP_003223020.1| hypothetical protein ECO103_3135 [Escherichia coli O103:H2 str.
12009]
gi|257760389|dbj|BAI31886.1| hypothetical protein ECO103_3135 [Escherichia coli O103:H2 str.
12009]
gi|309702942|emb|CBJ02273.1| putative phage related protein [Escherichia coli ETEC H10407]
Length = 97
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 34/81 (41%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y E+ +EK LV KK + FK +R PDR+++ P G +VE K
Sbjct: 3 YERESLIEKHLVAEVKKAGGVAFKFISPGRRSVPDRIVLLPGGRIVFVECKAPGKPPRAG 62
Query: 65 QKRVIATLLLYHQKVQVLSST 85
Q R L V VL S
Sbjct: 63 QLREHGRLRALGFTVVVLDSK 83
>gi|204927408|ref|ZP_03218610.1| VRR-NUC domain protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|204324073|gb|EDZ09268.1| VRR-NUC domain protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
Length = 89
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 34/81 (41%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y E+ +EK LV KK + FK +R PDR+++ P G +VE K
Sbjct: 3 YERESIIEKHLVAEVKKAGGVAFKFVSPGRRSVPDRIVLLPGGRLVFVECKAPGKAPRAD 62
Query: 65 QKRVIATLLLYHQKVQVLSST 85
Q R L V VL S
Sbjct: 63 QGREHERLRALGFTVVVLDSK 83
>gi|323693307|ref|ZP_08107525.1| VRR-NUC domain-containing protein [Clostridium symbiosum
WAL-14673]
gi|323502790|gb|EGB18634.1| VRR-NUC domain-containing protein [Clostridium symbiosum
WAL-14673]
Length = 93
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 40/90 (44%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +EK+L KK + K + G PDR+I+ P+G + E+K Q
Sbjct: 1 MLEKTIEKKLTTAVKKAGGIAPKFVSPSFAGMPDRIILLPDGKFAFAELKAPGESPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
K L +V V+ S E++ G + L
Sbjct: 61 KARHRLLRSLGFRVYVIDSIEQIGGMIDEL 90
>gi|262043425|ref|ZP_06016550.1| hypothetical protein HMPREF0484_3568 [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|259039251|gb|EEW40397.1| hypothetical protein HMPREF0484_3568 [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
Length = 89
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 34/81 (41%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y E+ +EK L K + + +K +R PDR+++ P G +VE KT
Sbjct: 3 YERESIIEKHLTATVKAVGGIAYKFVSPGRRSVPDRIVLLPGGRIVFVECKTPGKAPRAD 62
Query: 65 QKRVIATLLLYHQKVQVLSST 85
Q R L V VL S
Sbjct: 63 QLREHERLRALGFNVVVLDSK 83
>gi|254975144|ref|ZP_05271616.1| VRR-NUC domain-containing protein [Clostridium difficile
QCD-66c26]
gi|255092534|ref|ZP_05322012.1| VRR-NUC domain-containing protein [Clostridium difficile CIP
107932]
gi|255306561|ref|ZP_05350732.1| VRR-NUC domain-containing protein [Clostridium difficile ATCC
43255]
gi|255314271|ref|ZP_05355854.1| VRR-NUC domain-containing protein [Clostridium difficile
QCD-76w55]
gi|255516951|ref|ZP_05384627.1| VRR-NUC domain-containing protein [Clostridium difficile
QCD-97b34]
gi|255650053|ref|ZP_05396955.1| VRR-NUC domain-containing protein [Clostridium difficile
QCD-37x79]
gi|306519588|ref|ZP_07405935.1| phage-like protein [Clostridium difficile QCD-32g58]
Length = 108
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+K+EKRL K + L K + G PDR+++ P G +VE+K +L Q
Sbjct: 1 MLESKIEKRLKKEIELLGGKAMKFISPGEAGVPDRIVLLPEGHVIFVELKAPGKKLRKLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ + L KV+ +S+ +E+D F++ ++
Sbjct: 61 QYKMRELRELGFKVKCVSTLKEIDDFIKEVK 91
>gi|313898077|ref|ZP_07831616.1| VRR-NUC domain protein [Clostridium sp. HGF2]
gi|312957105|gb|EFR38734.1| VRR-NUC domain protein [Clostridium sp. HGF2]
Length = 93
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +EK+L KK + K + G PDRLI+ P+G + E+K Q
Sbjct: 1 MLEKTIEKKLTTAVKKAGGIAPKFVSPSFAGMPDRLILLPDGKFAFAELKAPGESPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
K L +V V+ S E++ G + L
Sbjct: 61 KARHRLLHSLGFRVYVIDSVEQIGGMIDEL 90
>gi|331090253|ref|ZP_08339140.1| hypothetical protein HMPREF1025_02723 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330401872|gb|EGG81447.1| hypothetical protein HMPREF1025_02723 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 108
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 44/93 (47%)
Query: 4 DYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSN 63
+ L E+ +EK LVK +K + K G PDRL++ P G +VE+K +L
Sbjct: 14 EVLRESVIEKALVKEAKSRGGMAVKFVSPGFDGVPDRLVLLPGGKCAFVELKAPGKKLRP 73
Query: 64 AQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+++ L V V+ E++ G L ++
Sbjct: 74 LKEKRKHQLEALGFSVYVIDGLEQIGGVLHGIQ 106
>gi|219855698|ref|YP_002472820.1| hypothetical protein CKR_2355 [Clostridium kluyveri NBRC 12016]
gi|219569422|dbj|BAH07406.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 106
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 43/92 (46%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
++ E +EK+LV KK+ + K G PDRL++ P+G +VE+K +
Sbjct: 13 FMLEKYIEKKLVAEVKKMGGIAAKFVSPGLDGMPDRLVLLPHGKMAFVELKAPGKKPRLL 72
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
Q R I L V+ +++ G L ++
Sbjct: 73 QIRRIKQLQKLGFACYVIDDVKQIGGILGEIQ 104
>gi|303239098|ref|ZP_07325628.1| VRR-NUC domain protein [Acetivibrio cellulolyticus CD2]
gi|302593436|gb|EFL63154.1| VRR-NUC domain protein [Acetivibrio cellulolyticus CD2]
Length = 138
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 45/90 (50%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +LEK+L K + L K G PDR+++ PNG ++ E+K +L Q
Sbjct: 47 MLEKELEKKLRTAVKAIGGLALKFVSPGMAGVPDRMVLLPNGRIYFSELKRHGEKLRPLQ 106
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
++ L + KV + S ++GFLR +
Sbjct: 107 QKRKQQLEMLGFKVYCIDSASSLEGFLREV 136
>gi|284048431|ref|YP_003398770.1| VRR-NUC domain protein [Acidaminococcus fermentans DSM 20731]
gi|283952652|gb|ADB47455.1| VRR-NUC domain protein [Acidaminococcus fermentans DSM 20731]
Length = 100
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 43/93 (46%)
Query: 4 DYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSN 63
++L E ++E LV +K L K + G PDRL++ P+G +VE+K +
Sbjct: 2 NFLREKQIEHSLVTAVRKQGGLALKFVSPSYAGMPDRLVLLPDGKMAFVEVKAPGKKPRV 61
Query: 64 AQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
Q++ L +V VL + G L+ +
Sbjct: 62 LQEKQHRMLRALGFQVFVLDDASAIPGLLKKIA 94
>gi|238018845|ref|ZP_04599271.1| hypothetical protein VEIDISOL_00705 [Veillonella dispar ATCC
17748]
gi|237864611|gb|EEP65901.1| hypothetical protein VEIDISOL_00705 [Veillonella dispar ATCC
17748]
Length = 110
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +E+ L KK+ C+ K G PDR+I+ P G +VE+K + G+L Q+
Sbjct: 2 EKDIERWLGNQLKKMGCIYMKFVSPGNDGVPDRIIVLPGGGVIFVELKDTNGKLMANQRV 61
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
I+ L V V++ + F+ +E
Sbjct: 62 QISRLRKQGALVFVVTGMPDAKLFVEDME 90
>gi|167757892|ref|ZP_02430019.1| hypothetical protein CLOSCI_00223 [Clostridium scindens ATCC 35704]
gi|167664546|gb|EDS08676.1| hypothetical protein CLOSCI_00223 [Clostridium scindens ATCC 35704]
Length = 120
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 2 RTDY-LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR 60
R +Y + E ++E++LV+ +K + K G PDRL++ P+G + E+K R
Sbjct: 21 RKEYGMREKQIEQKLVREVRKRGGICPKFTSPGFAGMPDRLLLLPHGRMAFAELKAPGCR 80
Query: 61 LSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
Q+ L +V V+ S E+++ + +
Sbjct: 81 PRPLQEARHKLLARLGFRVYVIDSPEQIEKIMAEM 115
>gi|256617083|ref|ZP_05473929.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|257088354|ref|ZP_05582715.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|256596610|gb|EEU15786.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256996384|gb|EEU83686.1| conserved hypothetical protein [Enterococcus faecalis D6]
Length = 95
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 40/90 (44%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++E+ LVK K + K G PDRL++ PNG +VE+K + + Q
Sbjct: 1 MREKQVEQALVKAVKARGGICPKFVSPGLSGVPDRLVLMPNGKIAFVEVKAPKKKPRALQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
+ L K VL E++ + +
Sbjct: 61 LYRMKQLTDLGFKCFVLDEVEQIPALIGEI 90
>gi|15837284|ref|NP_297972.1| hypothetical protein XF0682 [Xylella fastidiosa 9a5c]
gi|15838883|ref|NP_299571.1| hypothetical protein XF2292 [Xylella fastidiosa 9a5c]
gi|15839116|ref|NP_299804.1| hypothetical protein XF2526 [Xylella fastidiosa 9a5c]
gi|9105564|gb|AAF83492.1|AE003912_4 phage-related protein [Xylella fastidiosa 9a5c]
gi|9107456|gb|AAF85091.1|AE004041_3 phage-related protein [Xylella fastidiosa 9a5c]
gi|9107732|gb|AAF85324.1|AE004059_14 phage-related protein [Xylella fastidiosa 9a5c]
Length = 92
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
E +E+ LV + + K ++ + G PDR+ + PNG WVE+K + + Q
Sbjct: 6 RERTIERYLVAQVRAKGGEIRKVKWGGRHGAPDRIAMLPNGRTLWVELKAPGKQCTPHQV 65
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFL 92
R A + Q V V+ S + VD L
Sbjct: 66 REHARMRRMGQHVVVVDSLKGVDEVL 91
>gi|220930419|ref|YP_002507328.1| VRR-NUC domain protein [Clostridium cellulolyticum H10]
gi|220000747|gb|ACL77348.1| VRR-NUC domain protein [Clostridium cellulolyticum H10]
Length = 86
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 36/85 (42%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+K+EK L K + K G PDR+ + P G +VE K + Q
Sbjct: 1 MRESKIEKTLKKSVEAKGGKCLKFVSPGMSGVPDRICLYPGGKIIFVETKAPNKKPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDG 90
++ L +V+V+ S E +
Sbjct: 61 EKRHNELRSLGFEVRVIDSEAEANE 85
>gi|332983342|ref|YP_004464783.1| VRR-NUC domain-containing protein [Mahella australiensis 50-1
BON]
gi|332701020|gb|AEE97961.1| VRR-NUC domain-containing protein [Mahella australiensis 50-1
BON]
Length = 93
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E++L+K K L K G PDRL++ P G + E+K S + Q
Sbjct: 1 MREKYIEQKLIKAVKTAGGLALKFISPGFNGVPDRLLLLPGGIIAFAEIKASGSKPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
KR L KV V+ ++ G L +
Sbjct: 61 KRRHEMLRQLGFKVYVIDDESQIGGMLDEI 90
>gi|304439203|ref|ZP_07399121.1| VRR-NUC domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372335|gb|EFM25923.1| VRR-NUC domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 93
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 42/90 (46%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++EK LV K L K ++ G PDR+I+ P G +VE K G Q
Sbjct: 1 MLENEIEKALVDKVKLHGGLCLKFTSLSMTGIPDRIILLPKGKVGFVETKRPGGEPRPIQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
K+ I KV VL S E +D ++ +
Sbjct: 61 KKRIRQFKNLGFKVYVLDSKENIDEIIKRI 90
>gi|291283831|ref|YP_003500649.1| Phage associated protein [Escherichia coli O55:H7 str. CB9615]
gi|290763704|gb|ADD57665.1| Phage associated protein [Escherichia coli O55:H7 str. CB9615]
Length = 89
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 35/81 (43%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
Y E +EK LV KK + FK ++R PDR+++ P G +VE K+
Sbjct: 3 YERENLIEKHLVAEVKKAGGVAFKFISPSRRSVPDRIVLLPGGRLVFVECKSPGKPPRPD 62
Query: 65 QKRVIATLLLYHQKVQVLSST 85
Q R L V VL S
Sbjct: 63 QLREHERLRKLGFTVVVLDSK 83
>gi|300764699|ref|ZP_07074690.1| conserved hypothetical protein [Listeria monocytogenes FSL
N1-017]
gi|300514585|gb|EFK41641.1| conserved hypothetical protein [Listeria monocytogenes FSL
N1-017]
Length = 94
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 42/90 (46%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++E+ LVK K++ + K G PDRL++ PNG +VE+K + + Q
Sbjct: 1 MREKQVEQALVKAVKRVGGICPKFTSPGLAGVPDRLVLMPNGKLGFVEVKAPGKKPRSLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
+ L + VL +++ L +
Sbjct: 61 LFRMKQLTDLGFQCFVLDEIDQIPELLERI 90
>gi|300856811|ref|YP_003781795.1| phage-like protein [Clostridium ljungdahlii DSM 13528]
gi|300436926|gb|ADK16693.1| phage related protein [Clostridium ljungdahlii DSM 13528]
Length = 91
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ +EKRL K +K+ K G PDR+++ P+G +VE+K + Q
Sbjct: 1 MLESVIEKRLKKEIEKIGGKALKFVSPGMSGVPDRIVLLPHGKIIFVELKAPGKKRRKLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
+ L +V+ + S V F++ L
Sbjct: 61 EYRAKELNTLGFRVECIDSISGVKQFIKEL 90
>gi|42779466|ref|NP_976713.1| phage protein, putative [Bacillus cereus ATCC 10987]
gi|42735382|gb|AAS39321.1| phage protein, putative [Bacillus cereus ATCC 10987]
Length = 93
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +EK+LV KK++ + K G PDR+++ P+G ++E+K + Q
Sbjct: 1 MLEKYIEKKLVAEVKKMEGIAAKFVSPGLDGMPDRIVLLPHGKMAFIELKAPGKKPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
R I L V+ +++ G L ++
Sbjct: 61 IRRIRQLQKLGFTCYVIDDVKQIGGVLGEIQ 91
>gi|71274494|ref|ZP_00650782.1| phage-related protein [Xylella fastidiosa Dixon]
gi|71900323|ref|ZP_00682458.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71164226|gb|EAO13940.1| phage-related protein [Xylella fastidiosa Dixon]
gi|71729898|gb|EAO31994.1| phage-related protein [Xylella fastidiosa Ann-1]
Length = 92
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
E +E+ LV + + K ++ + G PDR+ + P G WVE+K + + Q
Sbjct: 6 RERTIERYLVAQVRAKGGEIRKVKWGGRHGAPDRIAMLPEGRTLWVELKAPGQQCTPHQV 65
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFL 92
R L Q+V V+ S + VD L
Sbjct: 66 REHERLRRMGQRVVVVDSFKGVDEVL 91
>gi|227498326|ref|ZP_03928476.1| diacylglycerol kinase [Acidaminococcus sp. D21]
gi|226903788|gb|EEH89706.1| diacylglycerol kinase [Acidaminococcus sp. D21]
Length = 102
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++E LV ++K + K + G PDRL++ +G +VE+K + Q
Sbjct: 1 MREKEIEHNLVMETRKAGGMAVKFVSPSFSGMPDRLVLLGDGKIGFVEVKAPGQKPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ A L +V VL + E++ L+ +
Sbjct: 61 LKRHAMLRRLGYQVFVLDAMEDIPAVLKAIA 91
>gi|323484111|ref|ZP_08089481.1| hypothetical protein HMPREF9474_01232 [Clostridium symbiosum
WAL-14163]
gi|323402553|gb|EGA94881.1| hypothetical protein HMPREF9474_01232 [Clostridium symbiosum
WAL-14163]
Length = 93
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 41/90 (45%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E++L KK+ + K G PDR+++ P+ +VE+K +L Q
Sbjct: 1 MRENAIERQLAMAVKKMGGMAVKFVSPGLDGVPDRIVLLPDKKMAFVELKAPGKKLRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
++ L V V+ E++ G L +
Sbjct: 61 EKRRWQLEALGFPVYVIDGAEQIGGVLDEI 90
>gi|57234141|ref|YP_181812.1| hypothetical protein DET1097 [Dehalococcoides ethenogenes 195]
gi|57224589|gb|AAW39646.1| conserved hypothetical protein [Dehalococcoides ethenogenes 195]
Length = 95
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 37/90 (41%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +EK+L+ K + + K G PDRL++ P G + E+K + Q
Sbjct: 3 IDEKTIEKKLINAVKSMGGIAPKFVSPGFDGMPDRLVLLPGGVMAFAELKAPGKKPRPLQ 62
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
L KV V+ ++ G L L
Sbjct: 63 LARHRLLRELGFKVYVIDDISQIGGMLDEL 92
>gi|220930214|ref|YP_002507123.1| VRR-NUC domain protein [Clostridium cellulolyticum H10]
gi|220000542|gb|ACL77143.1| VRR-NUC domain protein [Clostridium cellulolyticum H10]
Length = 93
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +EK+LV KK+ + K G PDRL++ P+G +VE+K + Q
Sbjct: 1 MLEKYIEKKLVAEVKKMGGIAAKFVSPGLDGMPDRLVLLPHGKMAFVELKAPGKKPRLLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
R I L V+ +++ G L ++
Sbjct: 61 IRRIKQLQKLGFTCYVIDDVKQIGGVLGEIQ 91
>gi|71276268|ref|ZP_00652546.1| phage-related protein [Xylella fastidiosa Dixon]
gi|71902065|ref|ZP_00684105.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71162876|gb|EAO12600.1| phage-related protein [Xylella fastidiosa Dixon]
gi|71728176|gb|EAO30367.1| phage-related protein [Xylella fastidiosa Ann-1]
Length = 92
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
E +E+ LV + + K ++ + G PDR+ + P G WVE+K + + Q
Sbjct: 6 RERTIERYLVAQVRAKGGEIRKVKWGGRHGAPDRIAMLPEGRTLWVELKAPGQQCTPHQV 65
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFL 92
R L Q+V V+ S + VD L
Sbjct: 66 REHERLRRMGQRVVVVDSLKGVDEVL 91
>gi|153955275|ref|YP_001396040.1| hypothetical protein CKL_2657 [Clostridium kluyveri DSM 555]
gi|146348133|gb|EDK34669.1| Phage-related protein [Clostridium kluyveri DSM 555]
Length = 93
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +EK+LV KK+ + K G PDRL++ P+G +VE+K + Q
Sbjct: 1 MLEKYIEKKLVAEVKKMGGIAAKFVSPGLDGMPDRLVLLPHGKMAFVELKAPGKKPRLLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
R I L V+ +++ G L ++
Sbjct: 61 IRRIKQLQKLGFACYVIDDVKQIGGILGEIQ 91
>gi|77412070|ref|ZP_00788396.1| P44 [Streptococcus agalactiae CJB111]
gi|77161875|gb|EAO72860.1| P44 [Streptococcus agalactiae CJB111]
Length = 109
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 39/91 (42%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E++LV KK + K + G PDRL+ P G VE+K G+ Q
Sbjct: 17 MREKIVEQKLVSEVKKRGGVCPKWVSPSFGGVPDRLVFLPKGKFGMVEVKAPGGKPRLLQ 76
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
KV VL S E++ L +E
Sbjct: 77 VTRHKMFDGLGFKVHVLDSVEKIGEVLDEIE 107
>gi|182682344|ref|YP_001830504.1| VRR-NUC domain-containing protein [Xylella fastidiosa M23]
gi|273810425|ref|YP_003344896.1| putative nuclease [Xylella phage Xfas53]
gi|182632454|gb|ACB93230.1| VRR-NUC domain protein [Xylella fastidiosa M23]
gi|257097800|gb|ACV41106.1| putative nuclease [Xylella phage Xfas53]
Length = 91
Score = 97.6 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
E +E+ LV + + K ++ + G PDR+ + PNG WVE+K + + Q
Sbjct: 5 RERTIERYLVAQVRAKGGEIRKVKWGGRHGAPDRIAMLPNGRTLWVELKAPGQQCTPHQV 64
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFL 92
R + Q+V V+ S + VD L
Sbjct: 65 REHERMRGMGQRVVVVDSLKGVDEVL 90
>gi|28199027|ref|NP_779341.1| hypothetical protein PD1135 [Xylella fastidiosa Temecula1]
gi|28199080|ref|NP_779394.1| hypothetical protein PD1192 [Xylella fastidiosa Temecula1]
gi|28199603|ref|NP_779917.1| hypothetical protein PD1728 [Xylella fastidiosa Temecula1]
gi|182681749|ref|YP_001829909.1| VRR-NUC domain-containing protein [Xylella fastidiosa M23]
gi|182681806|ref|YP_001829966.1| VRR-NUC domain-containing protein [Xylella fastidiosa M23]
gi|28057125|gb|AAO28990.1| phage-related protein [Xylella fastidiosa Temecula1]
gi|28057178|gb|AAO29043.1| phage-related protein [Xylella fastidiosa Temecula1]
gi|28057718|gb|AAO29566.1| phage-related protein [Xylella fastidiosa Temecula1]
gi|182631859|gb|ACB92635.1| VRR-NUC domain protein [Xylella fastidiosa M23]
gi|182631916|gb|ACB92692.1| VRR-NUC domain protein [Xylella fastidiosa M23]
gi|307578625|gb|ADN62594.1| VRR-NUC domain-containing protein [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|307580178|gb|ADN64147.1| VRR-NUC domain-containing protein [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|307580242|gb|ADN64211.1| VRR-NUC domain-containing protein [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 92
Score = 97.6 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
E +E+ LV + + K ++ + G PDR+ + PNG WVE+K + + Q
Sbjct: 6 RERTIERYLVAQVRAKGGEIRKVKWGGRHGAPDRIAMLPNGRTLWVELKAPGQQCTPHQV 65
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFL 92
R + Q+V V+ S + VD L
Sbjct: 66 REHERMRGMGQRVVVVDSLKGVDEVL 91
>gi|71275470|ref|ZP_00651756.1| phage-related protein [Xylella fastidiosa Dixon]
gi|71276172|ref|ZP_00652452.1| phage-related protein [Xylella fastidiosa Dixon]
gi|71898327|ref|ZP_00680500.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71900966|ref|ZP_00683079.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71163090|gb|EAO12812.1| phage-related protein [Xylella fastidiosa Dixon]
gi|71163770|gb|EAO13486.1| phage-related protein [Xylella fastidiosa Dixon]
gi|71729271|gb|EAO31389.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71731850|gb|EAO33908.1| phage-related protein [Xylella fastidiosa Ann-1]
Length = 92
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
E +E+ LV + + K ++ + G PDR+ + P G WVE+K + + Q
Sbjct: 6 RERTIERYLVAQVRAKGGEIRKVKWGGRHGAPDRIAMLPEGRTLWVELKAPGQQCTPHQV 65
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFL 92
R + Q+V V+ S + VD L
Sbjct: 66 REHERMRRMGQRVVVVDSFKGVDEVL 91
>gi|325690427|gb|EGD32430.1| VRR-NUC domain protein [Streptococcus sanguinis SK115]
Length = 103
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 41/91 (45%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++E++L SKK L K G PDR+++ P G +VE+K R Q
Sbjct: 1 MREREIEEKLRVESKKRGGLAMKFVSPGLVGVPDRIVVLPQGRLGFVELKAPGERPRRIQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
R + L V VL E++ L ++
Sbjct: 61 VRRMEQLRKLGFLVYVLDDKEKIGEILDDIQ 91
>gi|28198297|ref|NP_778611.1| hypothetical protein PD0380 [Xylella fastidiosa Temecula1]
gi|182680934|ref|YP_001829094.1| VRR-NUC domain-containing protein [Xylella fastidiosa M23]
gi|28056367|gb|AAO28260.1| phage-related protein [Xylella fastidiosa Temecula1]
gi|182631044|gb|ACB91820.1| VRR-NUC domain protein [Xylella fastidiosa M23]
gi|307579402|gb|ADN63371.1| VRR-NUC domain-containing protein [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 92
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
E +E+ LV + + K ++ + G PDR+ + PNG WVE+K + + Q
Sbjct: 6 RERTIERYLVAQVRAKGGEIRKVKWEGRHGAPDRIAMLPNGRTLWVELKAPGQQCTPHQV 65
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFL 92
R + Q+V V+ S + VD L
Sbjct: 66 REHERMRGMGQRVVVVDSLKGVDEVL 91
>gi|71901492|ref|ZP_00683579.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71728748|gb|EAO30892.1| phage-related protein [Xylella fastidiosa Ann-1]
Length = 92
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
E +E+ LV K + K ++ + G PDR+ + P G WVE+K + + Q
Sbjct: 6 RERTIERYLVAQVKAKGGEIRKVKWGGRHGAPDRIAMLPEGRTLWVELKAPGQQCTPHQV 65
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFL 92
R + Q+V V+ S + VD L
Sbjct: 66 REHERMRGMGQRVVVVDSLKGVDEVL 91
>gi|71899885|ref|ZP_00682033.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71730325|gb|EAO32408.1| phage-related protein [Xylella fastidiosa Ann-1]
Length = 92
Score = 97.3 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
E +E+ LV + + K ++ + G PDR+ + P G WVE+K + + Q
Sbjct: 6 RERTIERYLVAQVRAKGGEIRKVKWGGRHGAPDRIAMLPEGRTLWVELKAPGQQCTPHQV 65
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFL 92
R + Q+V V+ S + VD L
Sbjct: 66 REHERMRRMGQRVVVVDSLKGVDEVL 91
>gi|218133419|ref|ZP_03462223.1| hypothetical protein BACPEC_01284 [Bacteroides pectinophilus ATCC
43243]
gi|217990794|gb|EEC56800.1| hypothetical protein BACPEC_01284 [Bacteroides pectinophilus ATCC
43243]
Length = 93
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 43/91 (47%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ +E+ L + +KK + K G PDR+++ P+G +VE+K + Q
Sbjct: 1 MLESTVERHLREEAKKRKGMALKFVSPGMNGVPDRIVLMPDGKMAFVELKAPGKKPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ L V V+ + E++ G L ++
Sbjct: 61 LKRKRMLERLGFPVYVVDNIEQIGGILDEIQ 91
>gi|160935261|ref|ZP_02082644.1| hypothetical protein CLOBOL_00157 [Clostridium bolteae ATCC
BAA-613]
gi|158441992|gb|EDP19689.1| hypothetical protein CLOBOL_00157 [Clostridium bolteae ATCC
BAA-613]
Length = 97
Score = 96.9 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 43/90 (47%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E L K +K+ L FK G PDR+ I P+G ++VE+K G+++ Q
Sbjct: 1 MLEKDIEDWLNKQIEKMGGLAFKFVSPGNPGVPDRIYILPDGRVWFVELKQQLGKVARIQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
K L+ +++ ++ ++ +
Sbjct: 61 KWQRERLIRLGCNYRLVKGMDDARAYVGEM 90
>gi|291556510|emb|CBL33627.1| VRR-NUC domain [Eubacterium siraeum V10Sc8a]
Length = 93
Score = 96.9 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 37/90 (41%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E+ LVK K + K G PDRL++ P G +VE+K Q
Sbjct: 1 MREKIVEQHLVKAVKSSGGIAPKLVSPGFDGMPDRLVLLPGGKIGFVEVKAPGKEPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
L KV +L E++ G L +
Sbjct: 61 VARHGLLRRLGFKVYILDDLEQIGGILDEI 90
>gi|71897668|ref|ZP_00679913.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71898926|ref|ZP_00681093.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71731338|gb|EAO33402.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71732571|gb|EAO34624.1| phage-related protein [Xylella fastidiosa Ann-1]
Length = 92
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
E +E+ LV + + K ++ + G PDR+ + P G WVE+K + + Q
Sbjct: 6 RERTIERYLVAQVRAKGGEIRKVKWGGRHGAPDRIAMLPEGRTLWVELKAPGQQCTPHQV 65
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFL 92
R + Q+V V+ S + VD L
Sbjct: 66 REHERMRGMGQRVVVVDSLKGVDEVL 91
>gi|315654959|ref|ZP_07907864.1| VRR-NUC domain protein [Mobiluncus curtisii ATCC 51333]
gi|315490920|gb|EFU80540.1| VRR-NUC domain protein [Mobiluncus curtisii ATCC 51333]
Length = 93
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 44/91 (48%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E LE+ LVK + L + +K G PDR+++ P+G +VE+K G++ Q
Sbjct: 1 MKEQHLEQALVKTIEALGGVCWKLVSPGTAGVPDRIVLLPDGHVGFVEVKAPGGKVRAIQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
K + L VL++ +++ ++
Sbjct: 61 KHRLRQLKHLGFTALVLNNPDDIKKVCHAIQ 91
>gi|298346381|ref|YP_003719068.1| VRR-NUC domain-containing protein [Mobiluncus curtisii ATCC
43063]
gi|298236442|gb|ADI67574.1| VRR-NUC domain protein [Mobiluncus curtisii ATCC 43063]
Length = 93
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 44/91 (48%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E LE+ LVK + L + +K G PDR+++ P+G +VE+K G++ Q
Sbjct: 1 MKEQHLEQALVKTVEALGGVCWKLVSPGTAGVPDRIVLLPDGHVGFVEVKAPGGKVRAIQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
K + L VL++ +++ ++
Sbjct: 61 KHRLRQLKHLGFTALVLNNPDDIKKVCHAIQ 91
>gi|154504836|ref|ZP_02041574.1| hypothetical protein RUMGNA_02346 [Ruminococcus gnavus ATCC
29149]
gi|153794719|gb|EDN77139.1| hypothetical protein RUMGNA_02346 [Ruminococcus gnavus ATCC
29149]
Length = 93
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 43/91 (47%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ +E+ L + ++K + K G PDR+++ P+G +VE+K + Q
Sbjct: 1 MLESTVERHLREEARKRKGMALKFVSPGMNGVPDRIVLMPDGKMAFVELKAPGKKPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ L V V+ + E++ G L ++
Sbjct: 61 LKRKRMLERLGFPVYVVDNIEQIGGILDEIQ 91
>gi|134299060|ref|YP_001112556.1| hypothetical protein Dred_1197 [Desulfotomaculum reducens MI-1]
gi|134051760|gb|ABO49731.1| conserved hypothetical protein [Desulfotomaculum reducens MI-1]
Length = 93
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 40/90 (44%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
++EA++E++ + ++ +K G PDR+++ P G +VE+K Q
Sbjct: 1 MNEAQIERKFKREVERRGGKAWKFTSPGMSGVPDRIVLLPGGRSIFVELKAPGEEPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
+ L +V + S ++ F+ +
Sbjct: 61 VKRAKELTELGFEVYCIDSFAAINKFVIEV 90
>gi|297583089|ref|YP_003698869.1| VRR-NUC domain-containing protein [Bacillus selenitireducens
MLS10]
gi|297141546|gb|ADH98303.1| VRR-NUC domain protein [Bacillus selenitireducens MLS10]
Length = 96
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
++E +EK+LV ++ + K G PDRLI+ P G +VE+K RL Q
Sbjct: 1 MTEKDIEKQLVVSTRTAGGMAPKLVSPGFDGIPDRLILMPGGRIGFVEVKAPGKRLRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
++ L VL E++ L ++
Sbjct: 61 EKRKRQLEALGFSAFVLDGVEQIPEILTAIQ 91
>gi|325687763|gb|EGD29784.1| VRR-NUC domain protein [Streptococcus sanguinis SK72]
Length = 103
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 40/91 (43%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++E++L S+K L K G PDR+++ P G +VE+K + Q
Sbjct: 1 MREREIEEKLRVESQKRGGLAMKFVSPGLIGVPDRIVVLPQGRLGFVELKAPGEKPRKIQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
R + L V VL ++ L ++
Sbjct: 61 VRRMEQLRKLGFLVYVLDDKGKIGEILDDIQ 91
>gi|256847829|ref|ZP_05553274.1| phage associated protein [Lactobacillus coleohominis 101-4-CHN]
gi|256715518|gb|EEU30494.1| phage associated protein [Lactobacillus coleohominis 101-4-CHN]
Length = 93
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 41/91 (45%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++E VK + + L K + G PDRL++ P+G +VEMK Q
Sbjct: 1 MLEKRIETAFVKATHQRGGLCLKFTSPSMAGVPDRLVLLPDGHMGFVEMKAPGKHPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ I L +V V +++ G L ++
Sbjct: 61 VQRINQLKRLGYQVFVCDQFDQIGGMLDAIQ 91
>gi|225573261|ref|ZP_03782016.1| hypothetical protein RUMHYD_01452 [Blautia hydrogenotrophica DSM
10507]
gi|225039393|gb|EEG49639.1| hypothetical protein RUMHYD_01452 [Blautia hydrogenotrophica DSM
10507]
Length = 104
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 39/96 (40%)
Query: 1 MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR 60
+ ++ E +E++ + + K G PDRL + P G +VE+K +
Sbjct: 7 IGGVFVKEKIIEQKFRAAVRTAGGVAVKFVSPGLDGMPDRLALLPGGRMAFVEVKAPGKK 66
Query: 61 LSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
Q+ L +V VL +++ G + ++
Sbjct: 67 PRPLQEARHRMLRRLGFQVYVLDDEKQIGGIIDEIQ 102
>gi|71898990|ref|ZP_00681156.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71901325|ref|ZP_00683421.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71728909|gb|EAO31044.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71731236|gb|EAO33301.1| phage-related protein [Xylella fastidiosa Ann-1]
Length = 92
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
E +E+ LV + + K ++ + G PDR+ + P G WVE+K + + Q
Sbjct: 6 RERIIERYLVAQVRAKGGEIRKVKWGGRHGAPDRIAMLPEGRTLWVELKAPGQQCTPHQV 65
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFL 92
R + Q+V V+ S + VD L
Sbjct: 66 REHERMRGMGQRVVVVDSLKGVDEVL 91
>gi|167039883|ref|YP_001662868.1| hypothetical protein Teth514_1238 [Thermoanaerobacter sp. X514]
gi|300915370|ref|ZP_07132684.1| VRR-NUC domain protein [Thermoanaerobacter sp. X561]
gi|307724793|ref|YP_003904544.1| VRR-NUC domain-containing protein [Thermoanaerobacter sp. X513]
gi|166854123|gb|ABY92532.1| hypothetical protein Teth514_1238 [Thermoanaerobacter sp. X514]
gi|300888646|gb|EFK83794.1| VRR-NUC domain protein [Thermoanaerobacter sp. X561]
gi|307581854|gb|ADN55253.1| VRR-NUC domain-containing protein [Thermoanaerobacter sp. X513]
Length = 93
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E K+E++LVK K + + K G PDRLI+ PN +VE+K L Q
Sbjct: 1 MREKKIEQQLVKEVKDIGGIALKIASPGFDGMPDRLILLPNRKLAFVEVKAPGKTLRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
++ L V L +++ G L ++
Sbjct: 61 EKRKRQLEALGFLVFCLDHIDQIGGILHEIQ 91
>gi|327461126|gb|EGF07459.1| VRR-NUC domain protein [Streptococcus sanguinis SK1057]
Length = 106
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 39/91 (42%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E++L S+K L K G PDR++ P G +VE+K + Q
Sbjct: 1 MQERAIEEKLRVESQKRGGLAMKFISPGLVGVPDRIVALPQGKIGFVELKAPGEKPRKIQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
R + L V VL E++ L ++
Sbjct: 61 VRRMEQLRKLGFLVYVLDDKEKIGEILDDIQ 91
>gi|317132763|ref|YP_004092077.1| VRR-NUC domain-containing protein [Ethanoligenens harbinense
YUAN-3]
gi|315470742|gb|ADU27346.1| VRR-NUC domain-containing protein [Ethanoligenens harbinense
YUAN-3]
Length = 95
Score = 94.2 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 39/90 (43%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
SE ++E++L K+ + K G PDR+I+ P + E+K + Q
Sbjct: 3 SEKQIEQKLASEVKRRGGIAPKFVSPGFDGMPDRIILLPGARIAFAELKAPGKKPRRLQY 62
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
L +V V+ + E++ G + +E
Sbjct: 63 ARHRLLRKLGFRVYVIDNPEQIGGVIDEIE 92
>gi|197303502|ref|ZP_03168541.1| hypothetical protein RUMLAC_02224 [Ruminococcus lactaris ATCC
29176]
gi|197297500|gb|EDY32061.1| hypothetical protein RUMLAC_02224 [Ruminococcus lactaris ATCC
29176]
Length = 92
Score = 93.8 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E++LV+ KK L K G PDR+++ P+G +VE+K + Q
Sbjct: 1 MREKYIEQKLVREVKKRGGLCEKWNS-GSSGWPDRIVLLPDGKIGFVEVKAPGEKSRKLQ 59
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
L KV VL ++ G + ++
Sbjct: 60 VHRHDQLRALGYKVFVLDDMGQIGGIIDAIQ 90
>gi|170729636|ref|YP_001775069.1| hypothetical protein Xfasm12_0425 [Xylella fastidiosa M12]
gi|170730323|ref|YP_001775756.1| hypothetical protein Xfasm12_1175 [Xylella fastidiosa M12]
gi|170730596|ref|YP_001776029.1| hypothetical protein Xfasm12_1483 [Xylella fastidiosa M12]
gi|167964429|gb|ACA11439.1| conserved hypothetical protein [Xylella fastidiosa M12]
gi|167965116|gb|ACA12126.1| conserved hypothetical protein [Xylella fastidiosa M12]
gi|167965389|gb|ACA12399.1| conserved hypothetical protein [Xylella fastidiosa M12]
Length = 92
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
E +E+ LV + + K ++ + G PDR+ + P G WVE+K + + Q
Sbjct: 6 RERTIERYLVAQVRAKGGEIRKVKWGGRHGAPDRIAMLPEGRTLWVELKAPGQQCTLHQV 65
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFL 92
R + Q+V V+ S + VD L
Sbjct: 66 REHERMRRMGQRVVVVDSLKGVDEVL 91
>gi|297585288|ref|YP_003701068.1| VRR-NUC domain-containing protein [Bacillus selenitireducens
MLS10]
gi|297143745|gb|ADI00503.1| VRR-NUC domain protein [Bacillus selenitireducens MLS10]
Length = 93
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 35/89 (39%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E KLE+ + L K G PDRL I P G +VEMK G+ Q
Sbjct: 1 MEEQKLEQTFKRAVLNHGGLALKLITPGYAGIPDRLAILPGGRVAFVEMKRPGGKPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRM 94
+ L V V+ S E + +L
Sbjct: 61 VKRHEQLRQLGCDVAVIDSNERLGAWLAE 89
>gi|325662085|ref|ZP_08150704.1| hypothetical protein HMPREF0490_01442 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471748|gb|EGC74967.1| hypothetical protein HMPREF0490_01442 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 96
Score = 93.8 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 4 DYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSN 63
+ + E ++EK+L+ KK L K G PDR++I P+G +VE+K +
Sbjct: 3 EAMREREVEKQLIDEVKKRGGLCEKWIS-GTVGWPDRIVIIPDGKIGFVEVKRPGEKPRP 61
Query: 64 AQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
Q L KV VL +++ G L L+
Sbjct: 62 IQVHRHNQLRQIGVKVYVLDHQDKIGGILNDLQ 94
>gi|150391740|ref|YP_001321789.1| VRR_NUC domain-containing protein [Alkaliphilus metalliredigens
QYMF]
gi|149951602|gb|ABR50130.1| VRR_NUC domain protein [Alkaliphilus metalliredigens QYMF]
Length = 94
Score = 93.8 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 42/91 (46%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
++E +E++LVK K+ + K G PDR+++ P G +VE+K ++ Q
Sbjct: 1 MTEKYIEQKLVKAVKERGGIAPKFVSPGLDGVPDRIVLLPMGRMAFVELKAPGNKMRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ L V + E++ G L ++
Sbjct: 61 VKRKTQLEALGFLVYCIDGVEQIGGVLDEIK 91
>gi|227520160|ref|ZP_03950209.1| VRR-NUC domain protein [Enterococcus faecalis TX0104]
gi|227072405|gb|EEI10368.1| VRR-NUC domain protein [Enterococcus faecalis TX0104]
gi|315160594|gb|EFU04611.1| VRR-NUC domain protein [Enterococcus faecalis TX0645]
gi|315574063|gb|EFU86254.1| VRR-NUC domain protein [Enterococcus faecalis TX0309B]
gi|315579440|gb|EFU91631.1| VRR-NUC domain protein [Enterococcus faecalis TX0630]
gi|315582008|gb|EFU94199.1| VRR-NUC domain protein [Enterococcus faecalis TX0309A]
Length = 127
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 2 RTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRL 61
R D E +EK L++ K+ L +K RG PDR+I+ G F+VE+K G+
Sbjct: 19 RQDMQIENDIEKYLIRQIKRTGALCYKFTSPGTRGVPDRIILY-QGNVFFVELKRPGGKP 77
Query: 62 SNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
Q ++I V V+ S + VD + ++
Sbjct: 78 RKDQLKIIEKFKEQLIPVFVIDSKQGVDTLIYAMQ 112
>gi|257088836|ref|ZP_05583197.1| predicted protein [Enterococcus faecalis CH188]
gi|256997648|gb|EEU84168.1| predicted protein [Enterococcus faecalis CH188]
Length = 132
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 2 RTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRL 61
R D E +EK L++ K+ L +K RG PDR+I+ G F+VE+K G+
Sbjct: 24 RQDMQIENDIEKYLIRQIKRTGALCYKFTSPGTRGVPDRIILY-QGNVFFVELKRPGGKP 82
Query: 62 SNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
Q ++I V V+ S + VD + ++
Sbjct: 83 RKDQLKIIEKFKEQLIPVFVIDSKQGVDTLIYAMQ 117
>gi|313618478|gb|EFR90481.1| putative protein p44 [Listeria innocua FSL S4-378]
Length = 93
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 40/91 (43%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E++LV K + + K G PDR+++ P G +VE K + ++ Q
Sbjct: 1 MQEKYIEQKLVATVKSMGGMAPKFVSPGIDGMPDRIVLLPMGRIAFVECKATGKKMRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ L V L E++ G L ++
Sbjct: 61 NKRKKQLEALGFLVYCLDDIEQIGGILSEIQ 91
>gi|259502600|ref|ZP_05745502.1| hypothetical protein HMPREF0494_0896 [Lactobacillus antri DSM
16041]
gi|259169415|gb|EEW53910.1| hypothetical protein HMPREF0494_0896 [Lactobacillus antri DSM
16041]
Length = 93
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 41/91 (45%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++E VK + + L K + G PDRL++ P+G +VEMK Q
Sbjct: 1 MLEKQIETAFVKATHQRGGLCLKFISPSMAGVPDRLVLLPDGHMGFVEMKAPGKHPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ + L +V V +++ G L ++
Sbjct: 61 VQRLNQLKQLGFQVFVCDQLDQIGGMLDAIQ 91
>gi|227544669|ref|ZP_03974718.1| phage associated protein [Lactobacillus reuteri CF48-3A]
gi|300909416|ref|ZP_07126877.1| VRR-NUC domain protein [Lactobacillus reuteri SD2112]
gi|227185351|gb|EEI65422.1| phage associated protein [Lactobacillus reuteri CF48-3A]
gi|300893281|gb|EFK86640.1| VRR-NUC domain protein [Lactobacillus reuteri SD2112]
Length = 148
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 41/91 (45%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++E VK + + L K + G PDRL++ P+G +VEMK Q
Sbjct: 56 MLEKQIETTFVKATHQRGGLCLKFTSPSMAGVPDRLVLLPDGHMGFVEMKAPGKHPRPLQ 115
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ + L +V V +++ G L ++
Sbjct: 116 VQRLNQLKQLGYQVFVCDQFDQIGGMLDAIQ 146
>gi|317501094|ref|ZP_07959300.1| VRR-NUC domain-containing protein [Lachnospiraceae bacterium
8_1_57FAA]
gi|316897481|gb|EFV19546.1| VRR-NUC domain-containing protein [Lachnospiraceae bacterium
8_1_57FAA]
Length = 93
Score = 92.6 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 40/91 (43%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++E +L KK + K + G PDRLI+ P+G + E+K + Q
Sbjct: 1 MIEKQIENKLTMAVKKNGGIALKLVCPSFAGMPDRLILLPDGHIGFAELKAPGKKPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
L +V V+ E++ G + L+
Sbjct: 61 LSRHRLLRELGYRVYVIDDPEQIGGMINELQ 91
>gi|238854133|ref|ZP_04644480.1| phage associated protein [Lactobacillus gasseri 202-4]
gi|238833209|gb|EEQ25499.1| phage associated protein [Lactobacillus gasseri 202-4]
Length = 93
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++E VK +++ L K + G PDRL++ P G +VEMK+ Q
Sbjct: 1 MLEKRIESAFVKATQQRGGLCLKFTSPSMTGVPDRLVLLPEGHMGFVEMKSPGKHPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ ++ L +V V E++ G L ++
Sbjct: 61 IQRLSQLKQLGYQVFVCDQFEQIGGMLDAIQ 91
>gi|300853543|ref|YP_003778527.1| phage-like protein [Clostridium ljungdahlii DSM 13528]
gi|300433658|gb|ADK13425.1| phage-related protein [Clostridium ljungdahlii DSM 13528]
Length = 93
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 38/91 (41%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E +LV KK+ + K G PDRL+ P+G +VE+K ++ Q
Sbjct: 1 MLEKYIENKLVTAVKKMGGICPKFVSPGFDGVPDRLVFLPHGKFAFVELKAKGKKMRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
L V + ++ G L ++
Sbjct: 61 VNRKMQLEQLGFLVYCIDDASKIGGILNEIQ 91
>gi|167630963|ref|YP_001681462.1| hypothetical protein HM1_2942 [Heliobacterium modesticaldum Ice1]
gi|167593703|gb|ABZ85451.1| conserved hypothetical protein [Heliobacterium modesticaldum
Ice1]
Length = 93
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 39/91 (42%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E +L K + + K G PDRL++ P+G ++E+K S R Q
Sbjct: 1 MREKTIEIKLKNTVKSMGGIALKLISPGFDGVPDRLVLLPHGKLAFIELKASGKRPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
++ L V + ++ G L ++
Sbjct: 61 EKRKRQLEALGFLVFCIDGAGQIGGILDEIQ 91
>gi|320530607|ref|ZP_08031659.1| VRR-NUC domain protein [Selenomonas artemidis F0399]
gi|320137134|gb|EFW29064.1| VRR-NUC domain protein [Selenomonas artemidis F0399]
Length = 123
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E+ +E+ V+ KK L K + G PDR+++ P G + E+K +L Q
Sbjct: 21 ESWIEQAFVREVKKRGGLALKFVSPGRVGVPDRIVLIPGGRCVFAEIKAPGKKLRKLQIA 80
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFLR 93
+ + +V V+SS EEV F
Sbjct: 81 AHRVIHGFGLEVSVVSSLEEVKTFCE 106
>gi|227530257|ref|ZP_03960306.1| VRR_NUC domain protein [Lactobacillus vaginalis ATCC 49540]
gi|227349830|gb|EEJ40121.1| VRR_NUC domain protein [Lactobacillus vaginalis ATCC 49540]
Length = 93
Score = 91.9 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 42/91 (46%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++E VK + + L K + G PDRL++ P+G +VEMK R Q
Sbjct: 1 MLEKRIETAFVKATHQRGGLCLKFTSPSMAGVPDRLVLLPDGHMGFVEMKAPGKRPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ ++ L +V V ++ G L ++
Sbjct: 61 VQRLSQLKQLGYQVFVCDQFGQIGGMLDAIQ 91
>gi|76787039|ref|YP_329360.1| hypothetical protein SAK_0732 [Streptococcus agalactiae A909]
gi|76562096|gb|ABA44680.1| conserved hypothetical protein [Streptococcus agalactiae A909]
Length = 93
Score = 91.9 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 37/91 (40%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E++LV + + K + G PDRL+ P+G VE+K + Q
Sbjct: 1 MREKVVERKLVSEVRNRGGICPKWVSPSFAGVPDRLVFLPSGKFGLVEVKAPGEKPRLLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
KV VL +++ L +E
Sbjct: 61 VSRHRLFERLGFKVHVLDRVDKIGEVLDEIE 91
>gi|227544672|ref|ZP_03974721.1| phage associated protein [Lactobacillus reuteri CF48-3A]
gi|300909461|ref|ZP_07126922.1| VRR-NUC domain protein [Lactobacillus reuteri SD2112]
gi|227185348|gb|EEI65419.1| phage associated protein [Lactobacillus reuteri CF48-3A]
gi|300893326|gb|EFK86685.1| VRR-NUC domain protein [Lactobacillus reuteri SD2112]
Length = 148
Score = 91.9 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 42/91 (46%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++E VK + + L K + G PDRL++ P+G +VEMK R Q
Sbjct: 56 MLEKQIETAFVKATHQRGGLCLKFISPSMAGVPDRLVLLPDGHMGFVEMKAPGKRPRPLQ 115
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ ++ L +V V ++ G L ++
Sbjct: 116 VQRLSQLKQLGYQVFVCDQFGQIGGMLDAIQ 146
>gi|21283135|ref|NP_646223.1| hypothetical protein MW1406 [Staphylococcus aureus subsp. aureus
MW2]
gi|21204575|dbj|BAB95271.1| hypothetical protein [Staphylococcus aureus subsp. aureus MW2]
Length = 65
Score = 91.9 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 37 CPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
PDR+II P G ++VEMK +G+L QK V KV VL + E+V+ F+RM+
Sbjct: 1 MPDRIIIMPEGKTYFVEMKQEKGKLHPLQKYVHRQFENRDHKVYVLWNKEQVNTFIRMV 59
>gi|29374968|ref|NP_814121.1| hypothetical protein EF0329 [Enterococcus faecalis V583]
gi|29342426|gb|AAO80192.1| conserved hypothetical protein [Enterococcus faecalis V583]
Length = 106
Score = 91.9 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +EK LV+ K++ L +K RG PDR+I+ G F+VE+K G+ Q +
Sbjct: 4 ENDIEKYLVRQIKRIGALCYKFTSPGTRGVPDRIILY-QGNVFFVELKRPGGKPRKDQLK 62
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+I V V+ S + VD + ++
Sbjct: 63 IIEKFKEQLIPVFVIDSKQGVDMLIYAMQ 91
>gi|116630099|ref|YP_815271.1| Phage associated protein [Lactobacillus gasseri ATCC 33323]
gi|116095681|gb|ABJ60833.1| Phage associated protein [Lactobacillus gasseri ATCC 33323]
Length = 103
Score = 91.9 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++E VK +++ L K + G PDRL++ P G +VEMK+ Q
Sbjct: 11 MLEKRIESAFVKATQQRGGLCLKFTSPSMTGVPDRLVLLPEGHMGFVEMKSPGKHPRPLQ 70
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ ++ L +V V E++ G L ++
Sbjct: 71 IQRLSQLKQLGYQVFVCDQFEQIGGMLDAIQ 101
>gi|331085753|ref|ZP_08334836.1| hypothetical protein HMPREF0987_01139 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406676|gb|EGG86181.1| hypothetical protein HMPREF0987_01139 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 94
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 42/90 (46%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+SE +E++L +KK+ K G PDRL++ P G +VE+K ++ Q
Sbjct: 2 VSEKSIEQKLRTETKKMGGWAVKFSSPGLDGMPDRLVLFPGGKLGFVELKAPGKKMRPLQ 61
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
++ TL V + S E + G L +
Sbjct: 62 EKRKRTLEELGFLVFCVDSKEMIGGVLHEI 91
>gi|260579062|ref|ZP_05846961.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
43734]
gi|258602813|gb|EEW16091.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
43734]
Length = 92
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
++E +E+ L + K + L +K G PDR+ I G +VE+K Q
Sbjct: 1 MNEHAIEQHLKQAVKAIGGLCWKFTSPGTAGVPDRICIH-RGRVIFVELKAPGRLPRPIQ 59
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGF 91
+R I L + V V+ S E
Sbjct: 60 RRRIQQLTDHGMDVVVVDSVEGTKEV 85
>gi|281416461|ref|YP_003347381.1| hypothetical protein [Enterococcus phage phiFL4A]
gi|270209637|gb|ACZ64176.1| conserved hypothetical protein [Enterococcus phage phiFL4A]
Length = 106
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +EK L++ K+ L +K RG PDR+I+ G F+VE+K G+ Q +
Sbjct: 4 ENDIEKYLIRQIKRTGALCYKFTSPGTRGVPDRIILY-QGNVFFVELKRPGGKPRKDQLK 62
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+I V V+ S + VD + ++
Sbjct: 63 IIEKFKEQLIPVFVIDSKQGVDTLIYAMQ 91
>gi|300933479|ref|ZP_07148735.1| hypothetical protein CresD4_05372 [Corynebacterium resistens DSM
45100]
Length = 92
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
++E +E+ L + + + + +K G PDR+ I G +VE+K Q
Sbjct: 1 MNEHAIEQHLKQAVEAIGGICWKFTSPGTAGVPDRICIH-RGRVIFVELKAPGRLPRPIQ 59
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGF 91
+R I L + V V+ S E
Sbjct: 60 RRRIQQLTDHGMDVVVVDSVEGTKEV 85
>gi|313896465|ref|ZP_07830016.1| VRR-NUC domain protein [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312974889|gb|EFR40353.1| VRR-NUC domain protein [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 93
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 40/91 (43%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E++L K + + K G PDRL++ P G +VE+KT + Q
Sbjct: 1 MYERTIEQKLAARVKAMGGIAPKFTSPGFDGMPDRLVLLPGGRMGFVELKTPGKKPRALQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
L KV V+ E++D L ++
Sbjct: 61 LARHRLLRRLGFKVYVIDGIEQIDSVLEEID 91
>gi|50914496|ref|YP_060468.1| hypothetical protein M6_Spy1150 [Streptococcus pyogenes
MGAS10394]
gi|40218554|gb|AAR83208.1| hypothetical protein [Streptococcus pyogenes]
gi|50261599|gb|AAT72367.1| unknown [Streptococcus pyogenes]
gi|50903570|gb|AAT87285.1| Phage-related protein [Streptococcus pyogenes MGAS10394]
Length = 100
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 35/91 (38%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E+ LVK K + K + G PDRL+ P G VE+K + Q
Sbjct: 8 MREKYVEQALVKSVKARGGICPKWVSPSFSGVPDRLVFLPKGKFGLVEVKAPDQKPRKLQ 67
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
KV V+ E + L ++
Sbjct: 68 VSRHKLFERLGFKVYVIDRIEMIGEVLDEID 98
>gi|262113724|emb|CAR95391.1| hypothetical protein [Streptococcus phage phi-m46.1]
Length = 93
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 35/91 (38%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E+ LVK K + K + G PDRL+ PNG E+K + Q
Sbjct: 1 MREKYVEQALVKSVKARGGICPKWVSPSFSGVPDRLVFLPNGKFGLAEVKAPDQKPRKLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
KV V+ E + L ++
Sbjct: 61 GSRHKLFERLGFKVYVIDRIEMIGEVLDEID 91
>gi|71911261|ref|YP_282811.1| hypothetical protein M5005_Spy_1448 [Streptococcus pyogenes
MGAS5005]
gi|157311153|ref|YP_001469198.1| hypothetical protein P9_gp18 [Streptococcus phage P9]
gi|71854043|gb|AAZ52066.1| phage-related protein [Streptococcus pyogenes MGAS5005]
gi|119104302|gb|ABL61047.1| hypothetical protein [Streptococcus phage P9]
Length = 91
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
+E +E L KK L K G PDR+++ G F+VE+K + +Q
Sbjct: 3 TEKDIENYLK---KKTKGLCLKFTSPGTIGVPDRIVVMNTG-TFFVEVKAPGKKPRPSQV 58
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ + Q V V+ S E VD L+ +E
Sbjct: 59 AMHKKIKEAGQHVWVVDSYESVDMALKEME 88
>gi|94992971|ref|YP_601070.1| hypothetical protein MGAS2096_Spy1474 [Streptococcus pyogenes
MGAS2096]
gi|94546479|gb|ABF36526.1| phage-related protein [Streptococcus pyogenes MGAS2096]
Length = 97
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 3 TDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLS 62
+E +E L KK L K G PDR+++ G F+VE+K +
Sbjct: 5 GRMRTEKDIENYLK---KKTKGLCLKFTSPGTIGVPDRIVVMNTG-TFFVEVKAPGKKPR 60
Query: 63 NAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+Q + + Q V V+ S E VD L+ +E
Sbjct: 61 PSQVAMHKKIKEAGQHVWVVDSYESVDMALKEME 94
>gi|304436364|ref|ZP_07396340.1| VRR-NUC domain protein [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304370633|gb|EFM24282.1| VRR-NUC domain protein [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 93
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 38/91 (41%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +EK L +K + + K G PDRL++ P G +VE+K + Q
Sbjct: 1 MREKDIEKELTARTKAMGGIAPKFTSPGFDGMPDRLVLLPRGRMEFVELKAPGRKPRPLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
L KV V+ ++DG L +
Sbjct: 61 LARHRLLRRLGFKVYVIDEINQIDGVLEDIS 91
>gi|209559300|ref|YP_002285772.1| hypothetical protein Spy49_0764 [Streptococcus phage NZ131.2]
gi|209540501|gb|ACI61077.1| hypothetical protein Spy49_0764 [Streptococcus phage NZ131.2]
Length = 97
Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 3 TDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLS 62
+E +E L KK L K G PDR+++ G F+VE+K +
Sbjct: 5 GKTRTEKDIENYLK---KKTKGLCLKFASPGTIGVPDRIVVMNTG-TFFVEVKAPGKKPR 60
Query: 63 NAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+Q + + Q V V+ S E VD L+ +E
Sbjct: 61 PSQVAMHKKIKKAGQHVWVVDSYESVDIALKEME 94
>gi|319757799|gb|ADV69741.1| hypothetical protein SSUJS14_0650 [Streptococcus suis JS14]
Length = 93
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 35/91 (38%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E+ LVK K + K + G PDRL+ PNG VE+K + Q
Sbjct: 1 MREKYVEQALVKSVKARGGICPKWVSPSFSGVPDRLVFLPNGKFGLVEVKAPDQKPRMLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
V V+ E + L ++
Sbjct: 61 VSRHKLFEQLGFTVYVIDRIEMIGEVLDEID 91
>gi|332523351|ref|ZP_08399603.1| VRR-NUC domain protein [Streptococcus porcinus str. Jelinkova
176]
gi|332314615|gb|EGJ27600.1| VRR-NUC domain protein [Streptococcus porcinus str. Jelinkova
176]
Length = 93
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 35/91 (38%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E+ LVK K + K + G PDRL+ P G VE+K + Q
Sbjct: 1 MREKYVEQALVKSVKARGGICPKWVSPSFSGVPDRLVFLPKGKFGLVEVKAPDQKPRKLQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
KV V+ E + L ++
Sbjct: 61 VSRHKLFERLGFKVYVIDRIEMIGEVLDEID 91
>gi|50913382|ref|YP_059354.1| hypothetical protein M6_Spy0036 [Streptococcus pyogenes
MGAS10394]
gi|50902456|gb|AAT86171.1| Phage-related protein [Streptococcus pyogenes MGAS10394]
Length = 97
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 3 TDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLS 62
+E +E L KK L K G PDR+++ G F+VE+K +
Sbjct: 5 GKMRTEKDIENYLK---KKTKGLCLKFASPGTIGVPDRIVVMNTG-TFFVEVKAPGKKPR 60
Query: 63 NAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+Q + + Q V V+ S E VD L+ +E
Sbjct: 61 PSQVAMHKKIKKAGQHVWVVDSYESVDIALKEME 94
>gi|293400002|ref|ZP_06644148.1| hypothetical protein HMPREF0863_00285 [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291306402|gb|EFE47645.1| hypothetical protein HMPREF0863_00285 [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 106
Score = 88.0 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTS-RGRLSNAQK 66
E ++EK L L L +K G PDR+II NG +VE+K GR+S+ Q+
Sbjct: 12 ERQVEKYLTDKISNLGGLPWKFTSPGTAGVPDRIIIM-NGLICFVELKRPRGGRISDMQQ 70
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFLRML 95
I L K V+ + EEVD + +
Sbjct: 71 WRIEQLRKQGMKAYVIKNKEEVDYLVEHM 99
>gi|227496459|ref|ZP_03926743.1| VRR-NUC domain protein [Actinomyces urogenitalis DSM 15434]
gi|226834015|gb|EEH66398.1| VRR-NUC domain protein [Actinomyces urogenitalis DSM 15434]
Length = 93
Score = 88.0 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 33/86 (38%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E LV+ + L +K G PDRL++ P G VE+K R Q
Sbjct: 1 MRERAVEAALVREVRARGGLCWKLVSPGTVGVPDRLVLLPAGHVGLVEVKAPGERPRAVQ 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGF 91
+ I + VL +V
Sbjct: 61 RVRIDQVRALGTPCLVLDDPAKVGEV 86
>gi|21910977|ref|NP_665245.1| hypothetical protein SpyM3_1441 [Streptococcus pyogenes MGAS315]
gi|28876471|ref|NP_795677.1| hypothetical protein SpyM3_1441 [Streptococcus pyogenes phage
315.6]
gi|28895336|ref|NP_801686.1| hypothetical protein SPs0424 [Streptococcus pyogenes SSI-1]
gi|139473886|ref|YP_001128602.1| hypothetical protein SpyM51053 [Streptococcus pyogenes str.
Manfredo]
gi|21905185|gb|AAM80048.1| conserved hypothetical protein - phage-associated [Streptococcus
pyogenes MGAS315]
gi|28810582|dbj|BAC63519.1| hypothetical protein [Streptococcus pyogenes SSI-1]
gi|134272133|emb|CAM30378.1| hypothetical phage protein [Streptococcus pyogenes str. Manfredo]
Length = 91
Score = 88.0 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
+E +E L KK L K G PDR+++ G F+VE+K + +Q
Sbjct: 3 TEKDIENYLK---KKTKGLCLKFASPGTIGVPDRIVVMNTG-TFFVEVKAPGKKPRPSQV 58
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ + Q V V+ S E VD L+ +E
Sbjct: 59 AMHKKIKKAGQHVWVVDSYESVDIALKEME 88
>gi|94989080|ref|YP_597181.1| hypothetical protein MGAS9429_Spy1450 [Streptococcus pyogenes
MGAS9429]
gi|94542588|gb|ABF32637.1| phage-related protein [Streptococcus pyogenes MGAS9429]
Length = 97
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 3 TDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLS 62
+E +E L KK L K G PDR+++ G F+VE+K +
Sbjct: 5 GRMRTEKDIENYLK---KKTKGLCLKFTSPGTIGVPDRIVVMNTG-TFFVEVKAPGKKPR 60
Query: 63 NAQKRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
+Q + + Q V V+ S E VD L+ +
Sbjct: 61 PSQVAMHKKIKEAGQHVWVVDSYESVDMALKEM 93
>gi|213692068|ref|YP_002322654.1| hypothetical protein Blon_1186 [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|213523529|gb|ACJ52276.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|320458180|dbj|BAJ68801.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 96
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 36/82 (43%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E +E+R +++ L K + G PDRL+ P G + VE+K G+ +Q
Sbjct: 4 VRENTVERRFNMLARRHGGLSLKWVSPGRLGVPDRLLFMPGGRLYLVELKRPGGKPRASQ 63
Query: 66 KRVIATLLLYHQKVQVLSSTEE 87
+ A L V V+ +
Sbjct: 64 NAMFAKLETRGFHVWVVDDPDA 85
>gi|225871339|ref|YP_002747286.1| phage protein [Streptococcus equi subsp. equi 4047]
gi|225700743|emb|CAW95384.1| hypothetical phage protein [Streptococcus equi subsp. equi 4047]
Length = 91
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
+E +E L KK L K G PDR+++ G F+VE+K + +Q
Sbjct: 3 TEKDIENYLK---KKTKGLCLKFASPGTIGVPDRIVVMNTG-TFFVEVKAPGKKPRPSQV 58
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ + Q V V+ S E VD L+ +E
Sbjct: 59 AMHKKIKEAGQHVWVVDSYESVDIALKEME 88
>gi|300933381|ref|ZP_07148637.1| hypothetical protein CresD4_04880 [Corynebacterium resistens DSM
45100]
Length = 92
Score = 87.2 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
++E +E+ L K + + L +K G PDR+ I G +VE+K Q
Sbjct: 1 MNEQAIEQHLKKAVEAIGGLCWKFTSPGTAGVPDRICIH-RGRVIFVELKAPGRLPRPIQ 59
Query: 66 KRVIATLLLYHQKVQVLSSTEE 87
+R I L + V+ S
Sbjct: 60 RRRIHQLTDHGVDAVVVDSLTG 81
>gi|306826831|ref|ZP_07460131.1| VRR-NUC domain protein [Streptococcus pyogenes ATCC 10782]
gi|304430849|gb|EFM33858.1| VRR-NUC domain protein [Streptococcus pyogenes ATCC 10782]
Length = 91
Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
+E +E L KK L K G PDR+++ G F+VE+K + +Q
Sbjct: 3 TEKDIENYLK---KKTKGLCLKFTSPGTIGVPDRIVVMNTG-IFFVEVKAPDKKPRPSQV 58
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
+ + Q V V+ S E VD L+ +E
Sbjct: 59 AMHKKIKEAGQHVWVVDSYESVDIALKEME 88
>gi|297242713|ref|ZP_06926651.1| hypothetical protein GVAMD_0725 [Gardnerella vaginalis AMD]
gi|296888924|gb|EFH27658.1| hypothetical protein GVAMD_0725 [Gardnerella vaginalis AMD]
Length = 96
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 41/91 (45%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
+L E + E++LV+ K + K + G PDRL++ G +VE+K +
Sbjct: 3 FLREKETERKLVRDVKAAGGMAIKLTSPSVDGLPDRLVLLNGGKIGFVELKAPGKKPRVL 62
Query: 65 QKRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
Q + + L KV V+ ++ G + +
Sbjct: 63 QVKRMKDLQALGFKVFVVDEKSQIGGVIDAI 93
>gi|315656931|ref|ZP_07909818.1| VRR-NUC domain protein [Mobiluncus curtisii subsp. holmesii ATCC
35242]
gi|315492886|gb|EFU82490.1| VRR-NUC domain protein [Mobiluncus curtisii subsp. holmesii ATCC
35242]
Length = 92
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
++E +E++L K + L +K G PDR+ + N +VE+K + + Q
Sbjct: 1 MNERTIERQLKKAVEACGGLCWKLVCPGTSGVPDRICLM-NSRVVFVELKAAGKQPRPIQ 59
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
+R ++ L + V+ S + + L L
Sbjct: 60 QRRMSQLRDQGFQTFVVDSVDGIREVLDAL 89
>gi|313813467|gb|EFS51181.1| VRR-NUC domain protein [Propionibacterium acnes HL025PA1]
gi|315106938|gb|EFT78914.1| VRR-NUC domain protein [Propionibacterium acnes HL030PA1]
Length = 92
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
++E +E +L K + L +K G PDRL + G +VE+K + Q
Sbjct: 1 MNEHHIEAQLKKAVEASGGLCWKLVCPGTTGVPDRLCLM-GGQVVFVEVKAPGKKPRPIQ 59
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
+R ++ L + V+ S + + L L
Sbjct: 60 RRRMSQLAAHGFTALVVDSVDGIKEVLDAL 89
>gi|217965846|ref|YP_002351524.1| VRR_NUC domain protein [Listeria monocytogenes HCC23]
gi|217335116|gb|ACK40910.1| VRR_NUC domain protein [Listeria monocytogenes HCC23]
gi|307569606|emb|CAR82785.1| phage protein, putative [Listeria monocytogenes L99]
Length = 92
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+K+EK L + K L +K RG PDR+++ + +VE K + L Q
Sbjct: 1 MLESKVEKYLREQVNKRGGLCWKFTSPGTRGVPDRIVML-DRRIVFVETKAPKKELRKLQ 59
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFL 92
++ A + + + E+VD +
Sbjct: 60 EKRKAQIEAQGLLHYAVDTKEQVDNLM 86
>gi|328913306|gb|AEB64902.1| hypothetical protein LL3_03372 [Bacillus amyloliquefaciens LL3]
Length = 83
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 27 FKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTE 86
K G PDR+++ P G +VEMK + Q + L +V+VL S +
Sbjct: 1 MKFISPGLSGVPDRIVLLPGGKLVFVEMKAPGEKPRPLQLKRKKDLETMGFEVRVLDSID 60
Query: 87 EVDGFLR 93
+ F+R
Sbjct: 61 SITAFVR 67
>gi|50843065|ref|YP_056292.1| hypothetical protein PPA1595 [Propionibacterium acnes KPA171202]
gi|50840667|gb|AAT83334.1| phage-related protein [Propionibacterium acnes KPA171202]
Length = 92
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
++E +E +L K + L +K G PDRL + G +VE+K + Q
Sbjct: 1 MNEHHIEAQLKKAVEASGGLCWKLVCPGTTGVPDRLCLM-GGQVVFVEVKAPGKKPRPIQ 59
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
+R ++ L + V+ S + + L L
Sbjct: 60 RRRMSQLAAHGFTALVVDSVDGIKKVLDAL 89
>gi|282533170|gb|ADA82279.1| hypothetical protein [Escherichia phage K1G]
gi|282534221|gb|ADA82329.1| hypothetical protein [Escherichia phage K1H]
Length = 99
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKT-SRGRLSNAQ 65
E +++K + L LV K + + G PD L+I P G ++VE+K + Q
Sbjct: 8 KEGRVQKYAKDRFEALGGLVRKLSYEGRSGAPDLLVILPGGIVWFVEVKKDENTKPDPHQ 67
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFL 92
R + V V+ S ++VD +
Sbjct: 68 LREHERMRKRGANVFVVGSFKQVDDLI 94
>gi|288799808|ref|ZP_06405267.1| putative protein p44 [Prevotella sp. oral taxon 299 str. F0039]
gi|288333056|gb|EFC71535.1| putative protein p44 [Prevotella sp. oral taxon 299 str. F0039]
Length = 100
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQK 66
SE LE+ L K K++ +K N G PDRLII NG + E+K+ GRL+ Q+
Sbjct: 8 SEKVLERNLQKRVKEIGGKAYKFISSNCTGVPDRLIIF-NGRFCFAEIKSYNGRLAPRQE 66
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFLRML 95
I L KV ++ + E+++ ++ +
Sbjct: 67 IEIRKLKNLGAKVFIVYTPEDIESIIKYI 95
>gi|322691246|ref|YP_004220816.1| hypothetical protein BLLJ_1057 [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320456102|dbj|BAJ66724.1| conserved hypothetical protein [Bifidobacterium longum subsp.
longum JCM 1217]
Length = 88
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 34/77 (44%)
Query: 11 LEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIA 70
+E+R +++ L K + G PDRL+ P G + VE+K G+ +Q + A
Sbjct: 1 MERRFNMLARRHGGLSLKWVSPGRLGVPDRLLFMPGGRLYLVELKRPGGKPRASQSAMFA 60
Query: 71 TLLLYHQKVQVLSSTEE 87
L V V+ +
Sbjct: 61 KLETRGFHVWVVDDPDA 77
>gi|227875062|ref|ZP_03993207.1| phage associated protein [Mobiluncus mulieris ATCC 35243]
gi|304390305|ref|ZP_07372258.1| VRR-NUC domain protein [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|306817349|ref|ZP_07451094.1| VRR-NUC domain protein [Mobiluncus mulieris ATCC 35239]
gi|227844340|gb|EEJ54504.1| phage associated protein [Mobiluncus mulieris ATCC 35243]
gi|304326061|gb|EFL93306.1| VRR-NUC domain protein [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|304649790|gb|EFM47070.1| VRR-NUC domain protein [Mobiluncus mulieris ATCC 35239]
Length = 92
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
++E +E +L K + L +K G PDR+ + N +VE+K + Q
Sbjct: 1 MNERTIEHQLKKAIEASGGLCWKLVCPGTTGVPDRICLMRN-RVVFVELKAPGKQPRPIQ 59
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
R + L V+ S + + L L
Sbjct: 60 VRRMNQLRQQGFTALVVDSIDGIQEVLDALS 90
>gi|225220077|ref|YP_002720044.1| hypothetical protein EpSSL_gp05 [Enterobacteria phage SSL-2009a]
gi|224986018|gb|ACN74582.1| hypothetical protein [Enterobacteria phage SSL-2009a]
Length = 92
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E +++ L+K K + K + + G PD +II NG +VE+K G+ Q R
Sbjct: 4 EGRIQIYLMKQVKAVGGFCRKVAWEGRAGAPDLIIII-NGKIVFVEVKRPGGKPKPHQIR 62
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFLRML 95
+ V+V+ + ++ D + L
Sbjct: 63 EHERMARRGADVRVIDNIDDCDLLVAEL 90
>gi|273810590|ref|YP_003344971.1| gp36 [Sodalis phage SO-1]
gi|258619875|gb|ACV84128.1| gp36 [Sodalis phage SO-1]
Length = 92
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E K++ L++ K++ K + + G PD +II NG +VE+K G+ Q R
Sbjct: 4 EGKIQSHLMRRVKEVGGFCRKLAWEGRAGAPDLIIII-NGKIVFVEVKRPGGKPKPHQVR 62
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFLRML 95
+ V+V+ + + D + L
Sbjct: 63 EHERMARRGADVRVIDNISDCDLLVAEL 90
>gi|318064434|gb|ADV36448.1| gp36 [Edwardsiella phage eiAU]
gi|318064542|gb|ADV36500.1| gp36 [Edwardsiella phage eiDWF]
gi|318064646|gb|ADV36552.1| gp36 [Edwardsiella phage eiMSLS]
Length = 92
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 38/85 (44%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E K++ L + K + LV K + +RGCPD I+ P G VE+K G Q R
Sbjct: 4 EGKVQAHLQRRFKAIGGLVRKISYEGRRGCPDLFIVLPGGVVVMVEVKKPGGTPEPHQVR 63
Query: 68 VIATLLLYHQKVQVLSSTEEVDGFL 92
I L V V+ S E D +
Sbjct: 64 EIERLRQRGVPVYVIDSIEGADKLV 88
>gi|262200538|ref|YP_003271746.1| VRR-NUC domain-containing protein [Gordonia bronchialis DSM 43247]
gi|262083885|gb|ACY19853.1| VRR-NUC domain protein [Gordonia bronchialis DSM 43247]
Length = 131
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLII----TPNGAHFWVEMKTSRGRLS 62
E+ +E+ LV+ ++ L K G PDR+++ + +VE+K
Sbjct: 9 RESAIERHLVQRCAEIGVLCLKFTSPGHVGVPDRVLMGHDANDDSVTLFVEVKRPDEAPR 68
Query: 63 NAQKRVIATLLLYHQKVQVLSSTEEVDGFLRM 94
+Q +I + + Q V S VD +
Sbjct: 69 PSQVAMIRRMRDHGQHAVVADSKASVDALISD 100
>gi|304389861|ref|ZP_07371820.1| VRR-NUC domain protein [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|304327037|gb|EFL94276.1| VRR-NUC domain protein [Mobiluncus curtisii subsp. curtisii ATCC
35241]
Length = 92
Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
++E +E +L K + + L +K G PDR+ + N A +VE+K Q
Sbjct: 1 MNERTIEAKLKKAVEDIGGLCWKLVCPGTIGVPDRICLMRNRAV-FVELKVPGQNPRPIQ 59
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
R + L V+ S +++ L L
Sbjct: 60 LRRMNQLRYQGFTALVVDSVDDIQEVLDALS 90
>gi|134288569|ref|YP_001110808.1| hypothetical protein SPSV3_gp08 [Salmonella phage SETP3]
gi|125631934|gb|ABN47337.1| hypothetical protein [Salmonella phage SETP3]
Length = 95
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKT-SRGRLSNAQ 65
E +++K + + L LV K + + G PD L+I P G ++VE+K + Q
Sbjct: 4 KEGRVQKYAKERFEALGGLVRKLSYEGRSGAPDLLVILPRGVIWFVEVKKDENTKPDPHQ 63
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLR 93
R V V+ S ++VD +
Sbjct: 64 LREHERFRKRGANVFVVGSFKQVDKLIE 91
>gi|62327353|ref|YP_224066.1| hypothetical protein BPKS7gp44 [Salmonella phage SS3e]
gi|57472387|gb|AAW51249.1| hypothetical protein [Salmonella phage SS3e]
Length = 95
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKT-SRGRLSNAQK 66
E +++K + + L LV K + N+ G PD L+I P G ++VE+K + Q
Sbjct: 5 EGRVQKYAKERFEALGGLVRKLSYENRVGAPDLLVILPGGIIWFVEVKKDENTKPDPHQL 64
Query: 67 RVIATLLLYHQKVQVLSSTEEVDGFLR 93
R + V V+ S ++VD +
Sbjct: 65 REHERMRKRGANVFVVGSKKQVDKLIE 91
>gi|153814244|ref|ZP_01966912.1| hypothetical protein RUMTOR_00453 [Ruminococcus torques ATCC
27756]
gi|145848640|gb|EDK25558.1| hypothetical protein RUMTOR_00453 [Ruminococcus torques ATCC
27756]
Length = 74
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 33/72 (45%)
Query: 25 LVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSS 84
+ K + G PDR+++ P+G +VE+K + Q + L V V+ +
Sbjct: 1 MALKFVSHSMNGVPDRIVLMPDGKMAFVELKAPGKKPRPLQLKRKRMLERLGFPVYVVDN 60
Query: 85 TEEVDGFLRMLE 96
E++ G L ++
Sbjct: 61 IEQIGGILDEIQ 72
>gi|290466809|gb|ADD25739.1| hypothetical protein [Lactococcus phage 1358]
Length = 113
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+++EK L + K G PDR++I N +VE+K Q
Sbjct: 18 IRESEVEKYLKDRCVAVGGRAMKWT--GGNGVPDRIVIV-NDCVVFVELKRPYATPRADQ 74
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
A + V V+ E+VD L L
Sbjct: 75 LAQHAKIRRAGGTVYVVDRFEQVDELLDKL 104
>gi|226949729|ref|YP_002804820.1| VRR-NUC domain protein [Clostridium botulinum A2 str. Kyoto]
gi|226843509|gb|ACO86175.1| VRR-NUC domain protein [Clostridium botulinum A2 str. Kyoto]
Length = 62
Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 37 CPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
PDR+++ P G +VE+K + QK I L +V+++ S E+++ F+ ++
Sbjct: 1 MPDRIVLLPQGRIVFVELKAPDKKPRPIQKYRIKELRALGFRVEIIDSIEDINNFVEEIK 60
>gi|295319701|gb|ADG00079.1| VRR-NUC domain protein [Clostridium botulinum F str. 230613]
Length = 62
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 37 CPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLR 93
PDR+++ P G +VE+K + QK I L +V+++ S E ++ F+
Sbjct: 1 MPDRIVLLPEGRIIFVELKAPGKKPRPIQKYRIKELRSLGFRVEIIDSIERINNFVE 57
>gi|297587095|ref|ZP_06945740.1| VRR-NUC domain protein [Finegoldia magna ATCC 53516]
gi|297575076|gb|EFH93795.1| VRR-NUC domain protein [Finegoldia magna ATCC 53516]
Length = 65
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 36 GCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
G PDR+I+ P G +VE K G QK+ I KV VL S E +D ++ +
Sbjct: 3 GIPDRIILLPKGKVGFVETKRPGGEPRPIQKKRIRQFKNLGFKVYVLDSKENIDEIIKRI 62
>gi|255994013|ref|ZP_05427148.1| putative protein p44 [Eubacterium saphenum ATCC 49989]
gi|255993681|gb|EEU03770.1| putative protein p44 [Eubacterium saphenum ATCC 49989]
Length = 145
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
++E +E+RL++ K +K G PDR+++ G F+VE+K G LS Q
Sbjct: 5 ITEKDIERRLIRKVKSYGDKTYKFISPTAAGVPDRIVLL-AGHVFFVEVKRPDGELSLRQ 63
Query: 66 KRVIATLL-------LYHQKVQVLSSTEEVDGFLRML 95
+ L + VLS+ +EVD ++ +
Sbjct: 64 VLRLIELKGTVPHKSKLIPRCAVLSTADEVDVWVEYI 100
>gi|331007740|ref|ZP_08330866.1| hypothetical protein IMCC1989_1941 [gamma proteobacterium
IMCC1989]
gi|330418448|gb|EGG92988.1| hypothetical protein IMCC1989_1941 [gamma proteobacterium
IMCC1989]
Length = 88
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ +EK++ + +K+ L +K N RG PDRL VE K + + S Q
Sbjct: 1 MRESVIEKKVTEYAKEQGWLSYKWSSPNSRGVPDRLYFKRCLVVV-VEFKATNKKPSKLQ 59
Query: 66 KRVIATLLLYHQKVQVLSSTE 86
K + L V V+ S E
Sbjct: 60 KEIHKKLNEQGFLVHVIDSIE 80
>gi|85059136|ref|YP_454838.1| hypothetical protein SG1158 [Sodalis glossinidius str.
'morsitans']
gi|84779656|dbj|BAE74433.1| hypothetical phage protein [Sodalis glossinidius str.
'morsitans']
Length = 95
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSS 84
Q G PDRL++ P G +VE K + +Q+R L +V VL
Sbjct: 38 QAGVPDRLVVLPGGRVLFVECKAPGQKARPSQRREHDRLRALGGEVIVLDD 88
>gi|85059144|ref|YP_454846.1| hypothetical protein SG1166 [Sodalis glossinidius str.
'morsitans']
gi|84779664|dbj|BAE74441.1| hypothetical phage protein [Sodalis glossinidius str.
'morsitans']
Length = 102
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEV 88
Q G PDRL++ P G +VE K + +Q+R L +V VL V
Sbjct: 38 QAGVPDRLVVLPGGRVLFVECKAPGQKARPSQRREHDRLRALGGEVIVLDDRTVV 92
>gi|160898848|ref|YP_001564430.1| VRR-NUC domain-containing protein [Delftia acidovorans SPH-1]
gi|160364432|gb|ABX36045.1| VRR-NUC domain protein [Delftia acidovorans SPH-1]
Length = 94
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITP---------NGAHFWVEMKTS 57
E+ +E+ K K L+ K + G PD +++ P +VE K
Sbjct: 5 RESAIERADRKNHKAAGRLLLKFVSPGRNGMPDDILLNPIPPEHQELVARYFRFVEYKKP 64
Query: 58 RGRLSNAQKRVIATLLLYHQKVQVLSST 85
+ Q R A L V V+ S
Sbjct: 65 KATPRADQLRRHAELRALGFTVDVIDSQ 92
>gi|291336802|gb|ADD96337.1| hypothetical protein BACINT_02220 [uncultured organism
MedDCM-OCT-S08-C700]
Length = 79
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
++EA+ +K+L+ +K V K N+ G PD + + P+ ++E+K +GRLS Q
Sbjct: 1 MTEAQYQKKLIDRHEKEGWTVIKLIMCNKAGLPDLICMKPD-EVKFIEVKGPKGRLSEVQ 59
Query: 66 KRVIATLLLYHQKVQVL 82
K I L V+V+
Sbjct: 60 KYRIEELKEAGFDVEVM 76
>gi|91214214|ref|NP_919001.2| conserved phage protein [Burkholderia phage BcepNazgul]
gi|88604907|gb|AAQ63368.2| conserved phage protein [Burkholderia phage BcepNazgul]
Length = 108
Score = 54.9 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E ++E + +K V K QRG PDR+ I +G ++E K Q
Sbjct: 18 VRETRIEDQTNDWAKANGWFVAKFVSPGQRGVPDRMYIR-SGIVVFIEFKRKDAEPKRHQ 76
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRMLECY 98
+ + V + E+ +R+L Y
Sbjct: 77 YNKHDEMRRHGAYVHWADNHEDA---IRILASY 106
>gi|189465858|ref|ZP_03014643.1| hypothetical protein BACINT_02220 [Bacteroides intestinalis DSM
17393]
gi|189434122|gb|EDV03107.1| hypothetical protein BACINT_02220 [Bacteroides intestinalis DSM
17393]
Length = 80
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKR 67
E+K++ R++K + V K N+ G PD L++ +G F+VE+K + Q+
Sbjct: 5 ESKIQARIIKRLEAQGYYVVKLILTNKNGIPD-LLVLKDGKAFFVEVKRPGEKPRPLQEY 63
Query: 68 VIATLLLYHQKVQV 81
+ L +V
Sbjct: 64 RMNELKELGFICEV 77
>gi|297565626|ref|YP_003684598.1| VRR-NUC domain-containing protein [Meiothermus silvanus DSM 9946]
gi|296850075|gb|ADH63090.1| VRR-NUC domain protein [Meiothermus silvanus DSM 9946]
Length = 111
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 3 TDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRG--------CPDRLIITPNGAHFWVEM 54
+ +SEA++++ +V+ + +V + + +RG PD L G W+E+
Sbjct: 15 AEAMSEAEIQQGIVRYLRATGWVVLEIKGNAKRGGTVFQTKGIPD-LYAARKGRSLWLEV 73
Query: 55 KTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFL 92
K R Q+ + L +V V+ E ++ L
Sbjct: 74 KRPGQRPRPEQEALHERLRQEGCEVHVIDGIEALEKLL 111
>gi|307317156|ref|ZP_07596597.1| VRR-NUC domain protein [Sinorhizobium meliloti AK83]
gi|306897244|gb|EFN27989.1| VRR-NUC domain protein [Sinorhizobium meliloti AK83]
Length = 95
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 9 AKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRV 68
+ +++ LV+ K LV K + +RG PD L G +E K QKR
Sbjct: 5 SDVQRPLVEYGKSEGWLVRKVVYQGRRGSPD-LWFLKGGTWVLIEAKKFGDEARIQQKRE 63
Query: 69 IATLLLYHQKVQVLSSTEE 87
L V V+ + E
Sbjct: 64 HERLRRKGANVYVVDTLAE 82
>gi|301321600|gb|ADK68990.1| hypothetical protein KTR9_4909 [Gordonia sp. KTR9]
Length = 139
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGA----HFWVEMKTSRGRLSN 63
E +E LV ++ D L K +R DRL+I + ++E+K
Sbjct: 2 ERIVENHLVASCQRHDLLCLKVTSPARRAITDRLVIGHDDRSDPVVLFLELKRPGTVPRA 61
Query: 64 AQKRVIATLLLYH 76
+QK + A + ++
Sbjct: 62 SQKAMFARMRVHG 74
>gi|266623804|ref|ZP_06116739.1| hypothetical protein CLOSTHATH_05124 [Clostridium hathewayi DSM
13479]
gi|288864376|gb|EFC96674.1| hypothetical protein CLOSTHATH_05124 [Clostridium hathewayi DSM
13479]
Length = 123
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 13/87 (14%), Positives = 33/87 (37%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+++ LE+++ + + N G P ++I P G +VE+ A
Sbjct: 1 MTKIDLEQKIKDAVDARGGRMHEISVGNTPGFPGYMVILPGGHVGFVEIGKPNRNQLIAL 60
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFL 92
+ I+ L + + +++ +
Sbjct: 61 RNQISELRTLGCAAMAIDNESQINSMM 87
>gi|152990201|ref|YP_001355923.1| hypothetical protein NIS_0452 [Nitratiruptor sp. SB155-2]
gi|151422062|dbj|BAF69566.1| phage-related protein [Nitratiruptor sp. SB155-2]
Length = 91
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
+ E+ ++K+++ KK C K N+ G PD ++ NG +E+K R + + Q
Sbjct: 1 MKESLIQKKILDFLKKRGCYAVKVIAANESGTPD-ILACCNGKFVGIEVKAGRNKPTKLQ 59
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFLRM 94
+ + V S E+V+ L
Sbjct: 60 MHKLEKIKEAAGISMVAYSVEDVEKMLED 88
>gi|319955978|ref|YP_004167241.1| vrr-nuc domain-containing protein [Nitratifractor salsuginis DSM
16511]
gi|319418382|gb|ADV45492.1| VRR-NUC domain-containing protein [Nitratifractor salsuginis DSM
16511]
Length = 92
Score = 50.7 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65
++E K++KR+++ K + K N+ G PD ++ NG +E+K + Q
Sbjct: 1 MTEQKIQKRILRFLKDIGAYPAKIVTGNRAGIPD-ILACVNGRFVAIEVKVPGKEATKLQ 59
Query: 66 KRVIATLLLYHQKVQVLSSTEEVDGFL 92
+ + V +EV L
Sbjct: 60 DLHLQRIKEAGGVAFVAHGADEVREAL 86
>gi|220922591|ref|YP_002497893.1| VRR-NUC domain-containing protein [Methylobacterium nodulans ORS
2060]
gi|219947198|gb|ACL57590.1| VRR-NUC domain protein [Methylobacterium nodulans ORS 2060]
Length = 129
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 13 KRLVKGSKKLDCLVFKTQFINQRGC---------------PDRLIITPNGAHFWVEMKTS 57
K +V ++ DCL +RG PD ++ G F +E+K
Sbjct: 13 KIVVAMHRRFDCLCVHVPNGGRRGKREGVAFKEMGVEAGHPDLIVYGRGGRCFLIEVKAP 72
Query: 58 RGRLSNAQKRVIATLLLYHQKVQVLSSTEE 87
G LS +Q+ + L V V+ S +E
Sbjct: 73 GGSLSASQRAFLPGLRERGFPVHVVDSVDE 102
>gi|220924928|ref|YP_002500230.1| VRR-NUC domain-containing protein [Methylobacterium nodulans ORS
2060]
gi|219949535|gb|ACL59927.1| VRR-NUC domain protein [Methylobacterium nodulans ORS 2060]
Length = 129
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 21 KLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQ 80
KL+ + FK + + G PD ++ G F +E+K G LS +Q+ + L V
Sbjct: 37 KLEGVAFKEMGV-EAGHPDLIVYGRGGRCFLIEVKAPGGSLSASQRAFLPGLRERGFPVH 95
Query: 81 VLSSTEE 87
V+ S E+
Sbjct: 96 VVDSVED 102
>gi|313895715|ref|ZP_07829271.1| VRR-NUC domain protein [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312975841|gb|EFR41300.1| VRR-NUC domain protein [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 93
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 6 LSEAKLEKRLVKGSK-KLDCLVFKTQF--INQRGCPDRLIITPNGAHFWVEMKTSRGRLS 62
+ E+ + K ++ K + DC +K G PD +I G + E+KT RG+ +
Sbjct: 1 MKESSIVKSILTYLKSRPDCFCWKAHGGLYGTAGIPD-IIACIGGKFYGFEVKTERGKPT 59
Query: 63 NAQKRVIATLLLYHQKVQVLSSTEEVDGFLRM 94
Q+ I + V+ S +V L
Sbjct: 60 ALQEATIRKINAVGGIAAVVRSVADVKAVLEE 91
>gi|326336482|ref|ZP_08202652.1| VRR-NUC domain protein [Capnocytophaga sp. oral taxon 338 str.
F0234]
gi|325691355|gb|EGD33324.1| VRR-NUC domain protein [Capnocytophaga sp. oral taxon 338 str.
F0234]
Length = 112
Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 21/58 (36%)
Query: 35 RGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFL 92
G D ++ P+G ++EMK + + QK V S EE +
Sbjct: 49 AGVADLTVLLPHGKILYIEMKVKGNKQTPNQKTFQQKAEALGHTYYVCYSFEEFKEII 106
>gi|256003542|ref|ZP_05428532.1| VRR-NUC domain protein [Clostridium thermocellum DSM 2360]
gi|255992566|gb|EEU02658.1| VRR-NUC domain protein [Clostridium thermocellum DSM 2360]
gi|316941394|gb|ADU75428.1| VRR-NUC domain-containing protein [Clostridium thermocellum DSM
1313]
Length = 95
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 6 LSEAKLEKRLVKGSKKL-DCLVFKTQF--INQRGCPDRLIITPNGAHFWVEMKTSRGRLS 62
+SE + ++++ K + C +K G PD +I NG E+KT G+ +
Sbjct: 1 MSERSIVTKVLRYLKTVPGCFCWKEHGGMYGTAGIPD-IIACVNGRFIAFEIKTPSGKTT 59
Query: 63 NAQKRVIATLLLYHQKVQVLSSTEEVDGFLR 93
Q+ I +L V+ S +EV L
Sbjct: 60 KLQEATIRKILNAGGVAAVVHSVDEVKVILE 90
>gi|213157759|ref|YP_002320557.1| hypothetical protein AB57_3238 [Acinetobacter baumannii AB0057]
gi|301346503|ref|ZP_07227244.1| hypothetical protein AbauAB0_09664 [Acinetobacter baumannii AB056]
gi|301594702|ref|ZP_07239710.1| hypothetical protein AbauAB059_02795 [Acinetobacter baumannii
AB059]
gi|213056919|gb|ACJ41821.1| hypothetical protein AB57_3238 [Acinetobacter baumannii AB0057]
Length = 141
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 25 LVFKTQFIN-QRGCPDRLIITPNGAH--FWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
K + + + G PD +I PNG W+E+K+ +G+L +Q+ +I L +V
Sbjct: 65 EAAKFKKLGVKAGVPDLQLIVPNGEIHGLWIELKSKKGKLQPSQRLMIQRLEEQGYMCKV 124
Query: 82 LSSTEE 87
+E
Sbjct: 125 CFGADE 130
>gi|260556797|ref|ZP_05829015.1| PmgM [Acinetobacter baumannii ATCC 19606]
gi|260410056|gb|EEX03356.1| PmgM [Acinetobacter baumannii ATCC 19606]
Length = 141
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 25 LVFKTQFIN-QRGCPDRLIITPNGAH--FWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
K + + + G PD +I PNG W+E+K+ +G+L +Q+ +I L +V
Sbjct: 65 EAAKFKKLGVKAGVPDLQLIVPNGEIHGLWIELKSKKGKLQPSQRLMIQRLEEQGYMCKV 124
Query: 82 LSSTEE 87
+E
Sbjct: 125 CFGADE 130
>gi|125974152|ref|YP_001038062.1| hypothetical protein Cthe_1646 [Clostridium thermocellum ATCC
27405]
gi|125714377|gb|ABN52869.1| hypothetical protein Cthe_1646 [Clostridium thermocellum ATCC
27405]
Length = 100
Score = 48.0 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 6 LSEAKLEKRLVKGSKKL-DCLVFKTQF--INQRGCPDRLIITPNGAHFWVEMKTSRGRLS 62
+SE + ++++ K + C +K G PD +I NG E+KT G+ +
Sbjct: 1 MSEKSIVTKILRYLKTVPGCFCWKEHGGMYGTAGLPD-IIACVNGRFIAFEVKTPSGKTT 59
Query: 63 NAQKRVIATLLLYHQKVQVLSSTEEVDGFLR 93
Q+ I +L V+ S +EV L
Sbjct: 60 KLQEATIKKILNAGGVAAVVHSVDEVKVILE 90
>gi|220923738|ref|YP_002499040.1| VRR-NUC domain-containing protein [Methylobacterium nodulans ORS
2060]
gi|219948345|gb|ACL58737.1| VRR-NUC domain protein [Methylobacterium nodulans ORS 2060]
Length = 129
Score = 48.0 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 21 KLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQ 80
KL+ + FK + + G PD ++ G F +E+K G LS +Q+ + L V
Sbjct: 37 KLEGVAFKEMGV-EAGHPDLIVYGRGGRCFLIEVKAPGGSLSASQRAFLPVLRERGFPVH 95
Query: 81 VLSSTEE 87
V+ E+
Sbjct: 96 VVDCVED 102
>gi|85859013|ref|YP_461215.1| putative cytoplasmic protein [Syntrophus aciditrophicus SB]
gi|85722104|gb|ABC77047.1| hypothetical cytosolic protein [Syntrophus aciditrophicus SB]
Length = 105
Score = 48.0 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 28 KTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEE 87
+ + + G PD LI NG +E+K +G+ + AQK + V+ S E+
Sbjct: 39 QFYKMGRPGSPDLLIFLKNGRCAHIEVKNEKGKQNEAQKEYEQAVTDLGHDYHVVRSVEQ 98
Query: 88 VDGFLR 93
V+ L
Sbjct: 99 VEQLLN 104
>gi|220922463|ref|YP_002497765.1| VRR-NUC domain-containing protein [Methylobacterium nodulans ORS
2060]
gi|219947070|gb|ACL57462.1| VRR-NUC domain protein [Methylobacterium nodulans ORS 2060]
Length = 129
Score = 47.6 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 21 KLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQ 80
KL+ + FK + + G PD ++ G F +E+K G LS +Q+ + L V
Sbjct: 37 KLEGVAFKEMGV-EAGHPDLIVYGRGGRCFLIEVKAPGGSLSASQRAFLPGLRERGFPVH 95
Query: 81 VLSSTEE 87
V+ E+
Sbjct: 96 VVDCVED 102
>gi|262372948|ref|ZP_06066227.1| conserved hypothetical protein [Acinetobacter junii SH205]
gi|262312973|gb|EEY94058.1| conserved hypothetical protein [Acinetobacter junii SH205]
Length = 141
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 25 LVFKTQFIN-QRGCPDRLIITPNGAH--FWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
K + + + G PD ++ PNG W+E+K+ G+L +Q+ +I L +V
Sbjct: 65 EAAKFKKMGVKAGVPDLQLLVPNGLIHGLWIELKSKAGKLQPSQRLMIQRLEEQGYMCKV 124
Query: 82 LSSTEEVDGFLRMLEC 97
+E ++ C
Sbjct: 125 CFGADEAIQEIKKYLC 140
>gi|329767791|ref|ZP_08259307.1| hypothetical protein HMPREF0428_01004 [Gemella haemolysans M341]
gi|328838892|gb|EGF88486.1| hypothetical protein HMPREF0428_01004 [Gemella haemolysans M341]
Length = 97
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKT--QFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSN 63
+SE E ++ K K+ C K ++ +G PD L+I NG +E+K G+ S
Sbjct: 2 MSEKAFENKIKKFLKEKGCYFLKYNPEYFGIKGTPD-LLICCNGYFLGIEVKRETGKPSK 60
Query: 64 AQKRVIATLLLYHQKVQVLS--STEEVDGFLRML 95
Q + I + VL E+ + L
Sbjct: 61 LQLKKIEEIKNAGGIAMVLYPSGFEKFKKLIEEL 94
>gi|212638493|ref|YP_002315013.1| RecB family endonuclease [Anoxybacillus flavithermus WK1]
gi|212559973|gb|ACJ33028.1| RecB family endonuclease [Anoxybacillus flavithermus WK1]
Length = 105
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKT--QFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSN 63
++E +E ++ + +L K + G PD +I + +E+K G++S
Sbjct: 1 MTEKTIENQIKRYLDRLGVWYMKVHGSMYQKAGVPD-IIACIDSVFVGIEIKRPGGKVSV 59
Query: 64 AQKRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
Q+ I + V S E+V + L
Sbjct: 60 LQQLNIDEINKNGGCAFVAYSVEDVQRKIAEL 91
>gi|21910874|ref|NP_665142.1| hypothetical protein SpyM3_1338 [Streptococcus pyogenes MGAS315]
gi|28876420|ref|NP_795621.1| hypothetical protein SpyM3_1338 [Streptococcus pyogenes phage
315.5]
gi|28895436|ref|NP_801786.1| hypothetical protein SPs0524 [Streptococcus pyogenes SSI-1]
gi|21905080|gb|AAM79945.1| conserved hypothetical protein - phage-associated [Streptococcus
pyogenes MGAS315]
gi|28810682|dbj|BAC63619.1| hypothetical protein [Streptococcus pyogenes SSI-1]
Length = 106
Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 16 VKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLY 75
V K +D +F T +G D P+G F++E+K GR+ QK + +
Sbjct: 27 VGKVKTVDGRLFDTGLP--KGFCDLFGFKPDGQIFFIEVKNETGRVRPEQKNFMEVMASR 84
Query: 76 HQKVQVLSSTEEVDGFLRM 94
V V S E+ +
Sbjct: 85 GALVGVARSVEDALKIVND 103
>gi|192290701|ref|YP_001991306.1| VRR-NUC domain protein [Rhodopseudomonas palustris TIE-1]
gi|192284450|gb|ACF00831.1| VRR-NUC domain protein [Rhodopseudomonas palustris TIE-1]
Length = 160
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 33 NQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYH 76
G PD II G +++EMK +GR+ AQ ++A L
Sbjct: 82 GSAGVPDICIIW-RGVTYFLEMKALKGRVRPAQHVMMARLRGAG 124
>gi|71903675|ref|YP_280478.1| phage protein [Streptococcus pyogenes MGAS6180]
gi|71802770|gb|AAX72123.1| phage protein [Streptococcus pyogenes MGAS6180]
Length = 94
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 16 VKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLY 75
V K D F T +G D PNG F++E+K GR+ QK+ + +
Sbjct: 15 VGKVKTADGRFFDTGLP--KGFCDLFGFKPNGQIFFIEVKNETGRIRPEQKKFMEVMASR 72
Query: 76 HQKVQVLSSTEEVDGFLRM 94
V V S E+ +
Sbjct: 73 GALVGVARSVEDALNIVND 91
>gi|91976635|ref|YP_569294.1| hypothetical protein RPD_2158 [Rhodopseudomonas palustris BisB5]
gi|91683091|gb|ABE39393.1| hypothetical protein RPD_2158 [Rhodopseudomonas palustris BisB5]
Length = 160
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 33 NQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYH 76
G PD II G +++EMK +GR+ AQ + A L
Sbjct: 82 GSAGVPDICIIW-RGVTYFLEMKALKGRVRPAQHVMAARLRGAG 124
>gi|319762281|ref|YP_004126218.1| vrr-nuc domain-containing protein [Alicycliphilus denitrificans BC]
gi|317116842|gb|ADU99330.1| VRR-NUC domain-containing protein [Alicycliphilus denitrificans BC]
Length = 138
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 13 KRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATL 72
+R+ G+ K+ + + GCPD L +G VE+K GRL Q +A +
Sbjct: 59 ERMNTGAAKVGNRFIRFGWP---GCPDVLGQLKDGRFLGVEVKAQAGRLRPEQALFLARI 115
Query: 73 LLYHQKVQVLSSTEEVDGFLR 93
V +V LR
Sbjct: 116 RAAGGVAFVARDCRDVLRELR 136
>gi|94990321|ref|YP_598421.1| phage protein [Streptococcus phage 10270.2]
gi|94994244|ref|YP_602342.1| phage protein [Streptococcus phage 10750.2]
gi|94543829|gb|ABF33877.1| phage protein [Streptococcus phage 10270.2]
gi|94547752|gb|ABF37798.1| phage protein [Streptococcus phage 10750.2]
Length = 106
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 16 VKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLY 75
V K +D +F T +G D P+G F++E+K GR+ QK+ + +
Sbjct: 27 VGKVKTVDGRLFDTGLP--KGFCDLFGFKPDGQIFFIEVKNETGRVRPEQKKFMEVMASR 84
Query: 76 HQKVQVLSSTEEVDGFLRM 94
V V S E+ +
Sbjct: 85 GALVGVARSVEDALKIVND 103
>gi|19552945|ref|NP_600947.1| hypothetical protein NCgl1671 [Corynebacterium glutamicum ATCC
13032]
gi|62390622|ref|YP_226024.1| hypothetical protein cg1961 [Corynebacterium glutamicum ATCC
13032]
gi|21324510|dbj|BAB99134.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
gi|41325960|emb|CAF20123.1| hypothetical protein predicted by Glimmer [Corynebacterium
glutamicum ATCC 13032]
Length = 149
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLI--ITPNGAH--FWVEMKTSRGRLSN 63
E +E+ L + + K + G PDR++ I G +VE+K
Sbjct: 18 ETVIEQALQDACAVHNIMYLKFTS-SVTGVPDRILQGINAAGQPLTVYVELKRPGTHPRT 76
Query: 64 AQKRVIATLLLYHQKVQVLSSTE 86
QK V+ L+ + V V+ + +
Sbjct: 77 RQKEVMNRLINHGALVFVVDARD 99
>gi|256819730|ref|YP_003141009.1| VRR-NUC domain-containing protein [Capnocytophaga ochracea DSM
7271]
gi|256581313|gb|ACU92448.1| VRR-NUC domain protein [Capnocytophaga ochracea DSM 7271]
Length = 120
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 35 RGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLR 93
G D +++ P G ++EMK R ++ QK + V S EE +
Sbjct: 51 AGVADLVVLLPQGKSLYIEMKVKGNRQTDNQKEFQKKAIALGHTYAVCYSFEEFQQVIE 109
>gi|306827204|ref|ZP_07460494.1| phage protein [Streptococcus pyogenes ATCC 10782]
gi|304430660|gb|EFM33679.1| phage protein [Streptococcus pyogenes ATCC 10782]
Length = 116
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 13/102 (12%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKT------QFINQ---RGCP----DRLIITPNGAHFWV 52
LSE ++ + + +VF+ + G P D PNG F++
Sbjct: 12 LSEHDIQNLIRMELSQAGHMVFRANVGKVKTADGRFFDTGLPKGFCDLFGFKPNGQIFFI 71
Query: 53 EMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRM 94
E+K GR+ QK+ + + V V S E+ +
Sbjct: 72 EVKNETGRIRPEQKKFMEVMASRGALVGVARSVEDALKIVND 113
>gi|23455863|ref|NP_695093.1| hypothetical protein O1205p15 [Streptococcus phage O1205]
gi|2444095|gb|AAC79531.1| ORF15 [Streptococcus phage O1205]
Length = 86
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 16 VKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLY 75
V + D F T +G D P+G F++E+K +GRL + QK+ + +
Sbjct: 7 VGKVRMADGRWFDTGAP--KGFCDLFGFRPDGQIFFIEVKNEKGRLRDDQKKFMEAMKKR 64
Query: 76 HQKVQVLSSTEEVDGFLRMLEC 97
V V S ++ + +C
Sbjct: 65 GALVGVARSVKDAMDIVNEKKC 86
>gi|167758218|ref|ZP_02430345.1| hypothetical protein CLOSCI_00556 [Clostridium scindens ATCC 35704]
gi|167664115|gb|EDS08245.1| hypothetical protein CLOSCI_00556 [Clostridium scindens ATCC 35704]
Length = 159
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAH--FWVEMKTSRGRLS 62
++ E +L + K+ + V K + G PD + P G ++EMK G+ +
Sbjct: 22 FIPELRLLHHVPNEGKRTNGAVLKAAGLKT-GVPDLSLPVPRGGFHGLYIEMKFGSGKTT 80
Query: 63 NAQKRVIATLLLYHQKVQVLSSTEEVDGFLR 93
AQ+ +A L K V E+ +R
Sbjct: 81 KAQEEFMALLRQQGYKTAVAYGAEQAREIIR 111
>gi|19746258|ref|NP_607394.1| hypothetical protein spyM18_1287 [Streptococcus pyogenes
MGAS8232]
gi|19748445|gb|AAL97893.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232]
Length = 94
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 16 VKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLY 75
V K D F T +G D PNG F++E+K GR+ QK+ + +
Sbjct: 15 VGKVKTADGRFFDTGLP--KGFCDLFGFKPNGQIFFIEVKNETGRIRPEQKKFMEVMASR 72
Query: 76 HQKVQVLSSTEEVDGFLRM 94
V V S E+ +
Sbjct: 73 GALVGVARSVEDALKIVND 91
>gi|21910491|ref|NP_664759.1| hypothetical protein SpyM3_0955 [Streptococcus pyogenes MGAS315]
gi|28876239|ref|NP_795452.1| hypothetical protein SpyM3_0955 [Streptococcus pyogenes phage
315.2]
gi|28895812|ref|NP_802162.1| hypothetical protein SPs0900 [Streptococcus pyogenes SSI-1]
gi|21904690|gb|AAM79562.1| conserved hypothetical protein - phage-associated [Streptococcus
pyogenes MGAS315]
gi|28811061|dbj|BAC63995.1| hypothetical protein [Streptococcus pyogenes SSI-1]
Length = 106
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 16 VKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLY 75
V K D F T +G D PNG F++E+K GR+ QK+ + +
Sbjct: 27 VGKVKTADGRFFDTGLP--KGFCDLFGFKPNGQIFFIEVKNETGRIRPEQKKFMEVMASR 84
Query: 76 HQKVQVLSSTEEVDGFLRM 94
V V S E+ +
Sbjct: 85 GALVGVARSVEDALKIVND 103
>gi|94988184|ref|YP_596285.1| phage protein [Streptococcus phage 9429.1]
gi|94990064|ref|YP_598164.1| phage protein [Streptococcus phage 10270.1]
gi|94993976|ref|YP_602074.1| phage protein [Streptococcus phage 10750.1]
gi|94541692|gb|ABF31741.1| phage protein [Streptococcus phage 9429.1]
gi|94543572|gb|ABF33620.1| phage protein [Streptococcus phage 10270.1]
gi|94547484|gb|ABF37530.1| phage protein [Streptococcus phage 10750.1]
Length = 106
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 16 VKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLY 75
V K D F T +G D P+G F++E+K GR+ QK+ + +
Sbjct: 27 VGKVKTADGRFFDTGLP--KGFCDLFGFKPDGQVFFIEVKNETGRVRPEQKKFMEVMASR 84
Query: 76 HQKVQVLSSTEEVDGFLRM 94
V V S E+ +
Sbjct: 85 GALVGVARSVEDALKIVND 103
>gi|170755794|ref|YP_001781761.1| holliday junction resolvase Hjc [Clostridium botulinum B1 str.
Okra]
gi|169121006|gb|ACA44842.1| holliday junction resolvase Hjc [Clostridium botulinum B1 str.
Okra]
Length = 98
Score = 42.9 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 12 EKRLVKGSKKL-----DCLVFK-TQFI-NQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
EK+ KK FK ++ G PD +I NG +E+K G+ S
Sbjct: 4 EKKFENEIKKFLSELPKTWFFKYWAGPMSKAGIPD-IIACVNGKLVGIEVKAPNGKPSEL 62
Query: 65 QKRVIATLLLYHQKVQVLSSTE 86
QKR I + +L +
Sbjct: 63 QKRNIRLIQESGGVGYILYPKD 84
>gi|121586132|ref|ZP_01675924.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|153802909|ref|ZP_01957495.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|121549798|gb|EAX59820.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|124121574|gb|EAY40317.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
Length = 183
Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLL-YHQKVQVLSSTEE 87
G PD + +G+ +VE+K RLS +Q ++ + V V+ +EE
Sbjct: 105 TSGEPDLFLYKDDGSVLFVEVKKESDRLSKSQLVCLSQIKSILGCDVAVVYLSEE 159
>gi|281418296|ref|ZP_06249316.1| VRR-NUC domain protein [Clostridium thermocellum JW20]
gi|281409698|gb|EFB39956.1| VRR-NUC domain protein [Clostridium thermocellum JW20]
Length = 100
Score = 42.6 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 6 LSEAKLEKRLVKGSKKL-DCLVFKTQF--INQRGCPDRLIITPNGAHFWVEMKTSRGRLS 62
+SE + ++++ + + C +K G PD +I NG E+KT+ G+ +
Sbjct: 1 MSEKGIVTKVLRYLRTVPGCFCWKEHGGMYGTAGIPD-IIACVNGRFVAFEVKTASGKAT 59
Query: 63 NAQKRVIATLLLYHQKVQVLSSTEEVDGFLR 93
Q+ I +L V+ S +EV L
Sbjct: 60 KLQEATIKKILNVGGVAAVVRSVDEVKVILE 90
>gi|220923974|ref|YP_002499276.1| VRR-NUC domain-containing protein [Methylobacterium nodulans ORS
2060]
gi|219948581|gb|ACL58973.1| VRR-NUC domain protein [Methylobacterium nodulans ORS 2060]
Length = 126
Score = 42.6 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 36 GCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEE 87
G PD + +G +E+K + G LS Q+R+I L V V+ E
Sbjct: 51 GHPDLIAYGRDGRVLLLEVKAAGGSLSAVQRRLIPNLRERGFPVAVVRDVEG 102
>gi|223044312|ref|ZP_03614347.1| phage protein [Staphylococcus capitis SK14]
gi|222442280|gb|EEE48390.1| phage protein [Staphylococcus capitis SK14]
Length = 102
Score = 42.6 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 1 MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR 60
+R E + + V + D F T +G D P+G F++E+K G+
Sbjct: 10 IRIAASKENIIFRANVGKVRTADGRFFDTGLP--QGFCDLFGFRPDGQIFFIEVKKPGGK 67
Query: 61 LSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLR 93
+ + Q + I T+ V S E+ +
Sbjct: 68 IRDKQIKFIETVKKKGALAGVAYSVEDAIEIIE 100
>gi|125974242|ref|YP_001038152.1| hypothetical protein Cthe_1738 [Clostridium thermocellum ATCC
27405]
gi|125714467|gb|ABN52959.1| conserved hypothetical protein [Clostridium thermocellum ATCC
27405]
Length = 121
Score = 42.6 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFIN---QRGCPDRLIITPNGAHFWVEMKTSRGRLS 62
++E + + +++K K L + F + G PD LI NG +E+K +G+ +
Sbjct: 1 MTEKQFQTKVIKYLKTLSKTWYFKVFGGGFQRSGIPD-LICCINGVFVAIELKAEKGKPT 59
Query: 63 NAQKRVIATLLLYHQKVQVLS--STEEVDGFLRML 95
QK I + +L EE + +
Sbjct: 60 ELQKMNIKNINEAGGIGIILYPSGFEEFKKLIEEV 94
>gi|237737480|ref|ZP_04567961.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
gi|229421342|gb|EEO36389.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
Length = 117
Score = 42.6 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 27 FKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTE 86
K ++G PD +I NG +E+KT G+ S QK + + V+ S E
Sbjct: 46 RKLPTGAKKGIPDIWVII-NGKTIGLEVKTPTGKQSKEQKEIQEKFIKNGADYYVVRSYE 104
Query: 87 EVDGFLR 93
EV L
Sbjct: 105 EVKNILN 111
>gi|220924122|ref|YP_002499424.1| VRR-NUC domain-containing protein [Methylobacterium nodulans ORS
2060]
gi|219948729|gb|ACL59121.1| VRR-NUC domain protein [Methylobacterium nodulans ORS 2060]
Length = 126
Score = 42.2 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 36 GCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRM 94
G PD + +G +E+K + G LS AQ+R+I L V V+ E +R
Sbjct: 51 GHPDLIAYGRDGRVLLLEVKAAGGSLSAAQRRLIPNLRERGFPVAVVRDIEGAVQAMRE 109
>gi|289706284|ref|ZP_06502646.1| VRR-NUC domain protein [Micrococcus luteus SK58]
gi|289557007|gb|EFD50336.1| VRR-NUC domain protein [Micrococcus luteus SK58]
Length = 93
Score = 42.2 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKT--QFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSN 63
+ E ++++ ++ L V+ T + RG PD L++ G + E+KT +GR +
Sbjct: 1 MREDDFQRQVEGLAESLGWKVYHTHDSRRSHRGWPD-LVLGRRGRVLFRELKTMKGRTTP 59
Query: 64 AQKRVIATLLLYHQKVQV 81
QK+ + L V
Sbjct: 60 DQKQWLELLNAAGHDAAV 77
>gi|149915042|ref|ZP_01903571.1| hypothetical protein RAZWK3B_16760 [Roseobacter sp. AzwK-3b]
gi|149915252|ref|ZP_01903780.1| hypothetical protein RAZWK3B_15483 [Roseobacter sp. AzwK-3b]
gi|149810973|gb|EDM70812.1| hypothetical protein RAZWK3B_15483 [Roseobacter sp. AzwK-3b]
gi|149811230|gb|EDM71067.1| hypothetical protein RAZWK3B_16760 [Roseobacter sp. AzwK-3b]
Length = 146
Score = 41.8 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 36 GCPDRLIITPNGAH--FWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLR 93
G PD LI+ P + E+K Q+ + L +V V+ S ++V L
Sbjct: 58 GFPD-LIVLPYANIGALFFEVKAEGNYADKNQRDMHEALRALGYRVAVVRSIDDVREALA 116
Query: 94 M 94
Sbjct: 117 E 117
>gi|291336952|gb|ADD96479.1| VRR NUC domain containing protein [uncultured organism
MedDCM-OCT-S09-C94]
Length = 120
Score = 41.8 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 35 RGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSS-----TEEVD 89
GCPD ++ P G ++E+K +GRLS+ QK V+ ++V
Sbjct: 50 SGCPDIIVEYPMGKILYIELKNEKGRLSDNQKLWAVQSKGLGTPHFVVKGGLTECLDQVK 109
Query: 90 GFLR 93
+
Sbjct: 110 QIIE 113
>gi|9632928|ref|NP_049957.1| hypothetical protein Sfi19p37 [Streptococcus phage Sfi19]
gi|9634998|ref|NP_056714.1| gp106 [Streptococcus phage Sfi11]
gi|5524023|gb|AAD44076.1|AF115102_35 orf106 gp [Streptococcus phage Sfi19]
gi|7523558|gb|AAF63061.1|AF158600_15 gp106 [Streptococcus phage Sfi11]
gi|7523588|gb|AAF63090.1|AF158601_18 gp106 [Streptococcus phage SFi18]
Length = 106
Score = 41.8 bits (97), Expect = 0.035, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 16 VKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLY 75
V + D F T +G D P+G F++E+K +GRL QK+ + +
Sbjct: 27 VGKVRMADGRWFDTGAP--KGFCDLFGFRPDGQIFFIEVKNEKGRLREDQKKFMNAMKKR 84
Query: 76 HQKVQVLSSTEEVDGFLRMLE 96
V V S +E + +
Sbjct: 85 GALVGVARSVKEAMDIVNEKQ 105
>gi|315180272|gb|ADT87186.1| hypothetical protein vfu_A02035 [Vibrio furnissii NCTC 11218]
Length = 183
Score = 41.4 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLL-YHQKVQVLSSTEE 87
G PD + +G+ +VE+K RLS +Q +A + + V V EE
Sbjct: 105 TAGEPDLFLYKDDGSVLFVEVKKQSDRLSPSQLVCLAQIKSILNCDVGVAYLAEE 159
>gi|260911995|ref|ZP_05918558.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
gi|260633873|gb|EEX52000.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
Length = 115
Score = 41.4 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 34 QRGCPDRLIITPNGAH--FWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTE----E 87
+RG PD ++ P+ H +VEMKT GR +QK + L K + S E E
Sbjct: 50 RRGFPDLILCFPSKGHHALFVEMKTKTGRQQPSQKIMQRQLEWAGYKYAICRSLEDFINE 109
Query: 88 VDGFLR 93
++ +LR
Sbjct: 110 INDYLR 115
>gi|220921970|ref|YP_002497271.1| VRR-NUC domain-containing protein [Methylobacterium nodulans ORS
2060]
gi|219946576|gb|ACL56968.1| VRR-NUC domain protein [Methylobacterium nodulans ORS 2060]
Length = 127
Score = 41.4 bits (96), Expect = 0.041, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 36 GCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRM 94
G PD + +G E+K + G LS AQ+R+I L V V+ E +R
Sbjct: 52 GHPDLIAYGRDGRVLLFEVKAAGGSLSAAQRRLIPNLRERGFPVAVVRDVEGAVQAMRE 110
>gi|322806867|emb|CBZ04437.1| hypothetical protein H04402_02630 [Clostridium botulinum H04402
065]
Length = 98
Score = 41.4 bits (96), Expect = 0.045, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 12 EKRLVKGSKKL-----DCLVFK-TQFI-NQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
EK+ K +K ++ G PD +I +G +E+K GR S
Sbjct: 4 EKKFENEIKNFLSELPKTWFYKNWSGPYSKSGIPD-IIACVDGHFVGIEVKAPNGRASEL 62
Query: 65 QKRVIATLLLYHQKVQVLSSTE 86
QKR I + +L +
Sbjct: 63 QKRNIRLIQESGGVGYILYPKD 84
>gi|168229314|ref|YP_001686835.1| orf41 [Streptococcus phage 858]
gi|155241709|gb|ABT18029.1| orf41 [Streptococcus phage 858]
Length = 106
Score = 41.4 bits (96), Expect = 0.045, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 16 VKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLY 75
V + D F T +G D P+G F++E+K +GRL QK+ + +
Sbjct: 27 VGKVRMADGRWFDTGAP--KGFCDLFGFRPDGQIFFIEVKNEKGRLREDQKKFMNAMKKR 84
Query: 76 HQKVQVLSSTEEVDGFLRMLE 96
V V S +E + +
Sbjct: 85 GALVGVARSVKEAMDIVNEKQ 105
>gi|329117681|ref|ZP_08246398.1| VRR-NUC domain protein [Streptococcus parauberis NCFD 2020]
gi|326908086|gb|EGE55000.1| VRR-NUC domain protein [Streptococcus parauberis NCFD 2020]
Length = 115
Score = 41.4 bits (96), Expect = 0.047, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 13/101 (12%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFK------------TQFINQ-RGCPDRLIITPNGAHFWVE 53
SE ++ + KL F+ +G PD +G F++E
Sbjct: 8 SEHDIQSLIRLELTKLGIPCFRINVGKVKMKDGRWFSTGAPKGFPDLFGYRQDGQIFFIE 67
Query: 54 MKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRM 94
+K ++GR+ Q+ + V S E+ +
Sbjct: 68 VKDNKGRVRPEQENFMKVAKSKGALAGVARSVEDALEIIED 108
>gi|66391798|ref|YP_238522.1| hypothetical protein SPV2972_gp39 [Streptococcus phage 2972]
gi|56718455|gb|AAW27961.1| hypothetical protein [Streptococcus phage 2972]
Length = 106
Score = 41.0 bits (95), Expect = 0.049, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 16 VKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLY 75
V + D F T +G D P+G F++E+K +GRL QK+ + +
Sbjct: 27 VGKVRMADGRWFDTGAP--KGFCDLFGFRPDGQIFFIEVKNEKGRLREDQKKFMNAMKKR 84
Query: 76 HQKVQVLSSTEEVDGFLRMLE 96
V V S +E + +
Sbjct: 85 GALVGVARSVKEAMDIVNEKQ 105
>gi|289167299|ref|YP_003445566.1| hypothetical protein smi_0426 [Streptococcus mitis B6]
gi|288906864|emb|CBJ21698.1| conserved hypothetical protein [Streptococcus mitis B6]
Length = 102
Score = 41.0 bits (95), Expect = 0.052, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 16 VKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLY 75
V + D F T +G D P+G F+VE+K GR+ Q+ I T+
Sbjct: 27 VGKVRTADGRWFDTGLP--KGHADLYGFRPDGQIFYVEVKKENGRVRPEQENFIETVRKR 84
Query: 76 HQKVQVLSSTEEVDGFLR 93
V S +E ++
Sbjct: 85 GAIAGVARSAQEALELVK 102
>gi|223933201|ref|ZP_03625192.1| VRR-NUC domain protein [Streptococcus suis 89/1591]
gi|223898131|gb|EEF64501.1| VRR-NUC domain protein [Streptococcus suis 89/1591]
Length = 106
Score = 41.0 bits (95), Expect = 0.054, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFKT------QFINQ-------RGCPDRLIITPNGAHFWVE 53
E K++ + G + CLVF+ + +G D +G F++E
Sbjct: 3 KEHKIQNDIRVGLTEAGCLVFRANVGKVRTADGRYFDTGLPKGFSDLFGFRSDGQIFFIE 62
Query: 54 MKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLR 93
+K +GR+ Q++ I + + V S E+ +
Sbjct: 63 VKNEKGRVRPEQEKFIERMRKFGALAGVARSVEDALNIVE 102
>gi|237737302|ref|ZP_04567783.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
gi|229421164|gb|EEO36211.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
Length = 117
Score = 41.0 bits (95), Expect = 0.059, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 35 RGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFL 92
+G PD +I NG +E+KT G+ S QK + + V+ S EEV L
Sbjct: 54 KGIPDIWVII-NGKTIGLEVKTPTGKQSKEQKEIQEKFIKNGADYYVVRSYEEVKNIL 110
>gi|75764644|ref|ZP_00744078.1| hypothetical protein RBTH_00450 [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228904535|ref|ZP_04068618.1| hypothetical protein bthur0014_56730 [Bacillus thuringiensis IBL
4222]
gi|74487866|gb|EAO51648.1| hypothetical protein RBTH_00450 [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228855099|gb|EEM99675.1| hypothetical protein bthur0014_56730 [Bacillus thuringiensis IBL
4222]
Length = 92
Score = 41.0 bits (95), Expect = 0.061, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQ---RGCPDRLIITPNGAHFWVEMKTSRGRLS 62
+ E++ + +++K K+ K +Q G PD ++ G +E+KT G S
Sbjct: 1 MKESQFQAKVIKYLKEKGVWHVKYWAGSQYTKEGIPD-ILACIGGMFHGIELKTDVGTPS 59
Query: 63 NAQKRVIATLLLYHQKVQVLSSTE 86
Q I + + +L +
Sbjct: 60 KLQLYNIRKIKDSGGQAYILRPKD 83
>gi|294783587|ref|ZP_06748911.1| holliday junction resolvase Hjc [Fusobacterium sp. 1_1_41FAA]
gi|294480465|gb|EFG28242.1| holliday junction resolvase Hjc [Fusobacterium sp. 1_1_41FAA]
Length = 108
Score = 40.6 bits (94), Expect = 0.065, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKT--QFINQRGCPDRLIITPNGAHFWVEMK-TSRGRLS 62
L E +E ++ K K FK G PD ++ +G +E+K T G +S
Sbjct: 14 LKEKAVENKIKKWLKDKGYWFFKVHGSIFQPSGIPD-ILACIDGKFVAIEVKRTKGGVVS 72
Query: 63 NAQKRVIATLLLYHQKVQVLSSTEEVDGFLRM 94
QK IA + V SS EE L+
Sbjct: 73 PLQKAQIAKIKENGGIAGVASSMEEFLEILKE 104
>gi|323485272|ref|ZP_08090622.1| VRR-NUC domain-containing protein [Clostridium symbiosum
WAL-14163]
gi|323401450|gb|EGA93798.1| VRR-NUC domain-containing protein [Clostridium symbiosum
WAL-14163]
Length = 118
Score = 40.6 bits (94), Expect = 0.071, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKT---QFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
E E ++ K K V K + G PD L++ +G +E+K G S
Sbjct: 4 EKNFENKVKKFLKDKGAWVLKYWGGAAYTKSGIPD-LLVCSDGRFLGIEVKAPNGEPSLL 62
Query: 65 QKRVIATLLLYHQKVQVLSSTE 86
Q + + +L +
Sbjct: 63 QLVNLKKIRESGGYGILLYPKD 84
>gi|76788419|ref|YP_329253.1| hypothetical protein SAK_0621 [Streptococcus agalactiae A909]
gi|76799184|ref|ZP_00781364.1| gp106 [Streptococcus agalactiae 18RS21]
gi|76563476|gb|ABA46060.1| conserved hypothetical protein [Streptococcus agalactiae A909]
gi|76585460|gb|EAO62038.1| gp106 [Streptococcus agalactiae 18RS21]
Length = 93
Score = 40.6 bits (94), Expect = 0.073, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 16 VKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLY 75
V K D F T +G D PNG F++E+K GR+ QK + +
Sbjct: 15 VGKVKTADGRFFDTGLP--KGFCDLFGFKPNGQIFFIEVKNETGRIRPEQKNFMEVMASK 72
Query: 76 HQKVQVLSSTEEVDGFLR 93
V S E+ +
Sbjct: 73 GALAGVARSVEDALKIVN 90
>gi|77360920|ref|YP_340495.1| hypothetical protein PSHAa1996 [Pseudoalteromonas haloplanktis
TAC125]
gi|76875831|emb|CAI87052.1| conserved protein of unknown function; putative enzyme
[Pseudoalteromonas haloplanktis TAC125]
Length = 730
Score = 40.3 bits (93), Expect = 0.084, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 35 RGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
G PD ++I NG + E+K +L Q I L +V +
Sbjct: 509 DGYPDLMVIH-NGKVHFEEVKAPGDKLRRNQLTTIDNLKSSGFEVHI 554
>gi|321265299|ref|XP_003197366.1| hypothetical protein CGB_M3340W [Cryptococcus gattii WM276]
gi|317463845|gb|ADV25579.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 976
Score = 40.3 bits (93), Expect = 0.093, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 4 DYLSEAKLEKRL-VKGSKKLDCLVFKTQFINQ---RGCPDRLIITPNGAHF-WVEMKTSR 58
+Y E LE+ L G K L + + G PD ++ P +VE+K
Sbjct: 804 EYEKE-DLEEILECLGGKTLSGVCRMLAEEYRHRASGVPDLIVWNPETKDARFVEVKGPG 862
Query: 59 GRLSNAQKRVIATLLLYHQKVQV 81
LS QK I LL +V+V
Sbjct: 863 DSLSETQKIWIDVLLSTGIQVEV 885
>gi|119471121|ref|ZP_01613653.1| hypothetical protein ATW7_09096 [Alteromonadales bacterium TW-7]
gi|119445777|gb|EAW27059.1| hypothetical protein ATW7_09096 [Alteromonadales bacterium TW-7]
Length = 745
Score = 40.3 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 35 RGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVD 89
G PD ++I NG + E+K +L Q I L V + + VD
Sbjct: 521 DGYPDLMVIN-NGQVHFEEVKAPGDKLRRNQLTTIDNLKNVGFTVHIAAVKWFVD 574
>gi|9632454|ref|NP_049426.1| hypothetical protein DT1p37 [Streptococcus phage DT1]
gi|4530174|gb|AAD21914.1| unknown [Streptococcus phage DT1]
Length = 107
Score = 40.3 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 16 VKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLY 75
V + D F T +G D P+G F++E+K +GRL + QK+ + +
Sbjct: 27 VGKVRMADGRWFDTGAP--KGFCDLFGFRPDGQIFFIEVKNEKGRLRDDQKKFMEAMKKR 84
Query: 76 HQKVQVLSSTEE 87
V V S E+
Sbjct: 85 GALVGVARSVED 96
>gi|260063424|ref|YP_003196504.1| hypothetical protein RB2501_01410 [Robiginitalea biformata
HTCC2501]
gi|88782868|gb|EAR14042.1| hypothetical protein RB2501_01410 [Robiginitalea biformata
HTCC2501]
Length = 84
Score = 39.9 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 36 GCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDG 90
G D + + P G +E+KT RG S Q A ++ + V+ S +E+
Sbjct: 23 GVSDMIYLKPGGRPLLIEIKTMRGTQSPKQVAWQARVVANGYRYYVVRSLDEMKE 77
>gi|51596137|ref|YP_070328.1| hypothetical protein YPTB1802 [Yersinia pseudotuberculosis IP
32953]
gi|51589419|emb|CAH21041.1| hypothetical protein YPTB1802 [Yersinia pseudotuberculosis IP
32953]
Length = 152
Score = 39.9 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 34 QRGCPDRLIITPNGAHF--WVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSST 85
++G PD + P G + W+EMK+S+G ++N Q ++ L KV V S
Sbjct: 80 RKGVPDLFLALPRGGYAGLWIEMKSSKGHVNNNQNCWLSKLGDIGYKVDVSYSF 133
>gi|239834262|ref|ZP_04682590.1| p103 [Ochrobactrum intermedium LMG 3301]
gi|239822325|gb|EEQ93894.1| p103 [Ochrobactrum intermedium LMG 3301]
Length = 170
Score = 39.9 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 21/48 (43%)
Query: 35 RGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVL 82
G PD I G +E K +GRLS AQK A L V V+
Sbjct: 94 SGEPDLRIYGEYGRLLMIENKVGQGRLSPAQKDRHAALQRLGYTVLVI 141
>gi|325292909|ref|YP_004278773.1| hypothetical protein AGROH133_06209 [Agrobacterium sp. H13-3]
gi|325060762|gb|ADY64453.1| hypothetical protein AGROH133_06209 [Agrobacterium sp. H13-3]
Length = 157
Score = 39.9 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 36 GCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVL 82
G D I G +E K +GRLS AQ A+L V+V+
Sbjct: 83 GEADLRIYLKGGKLRMIENKVGKGRLSPAQVERHASLARLGHPVEVV 129
>gi|325956970|ref|YP_004292382.1| hypothetical protein LAC30SC_06595 [Lactobacillus acidophilus 30SC]
gi|325333535|gb|ADZ07443.1| hypothetical protein LAC30SC_06595 [Lactobacillus acidophilus 30SC]
Length = 131
Score = 39.5 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 16 VKGSKKLDCLVFKTQFINQRGCPDRL-IITPNGAHFWVEMKTSRGRLSNAQKRVIATLLL 74
V + D F T N G PD + F++E+K+ GR+ Q L+
Sbjct: 38 VGKVRTPDGRYFSTGAPN--GMPDLFGFRWIDRRIFFIEVKSPAGRIRPDQMAFHQDLMH 95
Query: 75 YHQKVQVLSSTEEVDGFLRM 94
H + S ++ +
Sbjct: 96 LHVIHGIARSIDDARKIVNE 115
>gi|312984190|ref|ZP_07791536.1| phage protein [Lactobacillus crispatus CTV-05]
gi|310894409|gb|EFQ43485.1| phage protein [Lactobacillus crispatus CTV-05]
Length = 122
Score = 39.5 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 16 VKGSKKLDCLVFKTQFINQRGCPDRL-IITPNGAHFWVEMKTSRGRLSNAQKRVIATLLL 74
V + D F T G PD +G F++E+K +GRL Q L
Sbjct: 38 VGKIRLPDGRFFSTGLP--SGFPDLFGFRWTDGKIFFIEVKNVKGRLRPDQIVFHKMLQR 95
Query: 75 YH 76
+
Sbjct: 96 HG 97
>gi|332522956|ref|ZP_08399208.1| VRR-NUC domain protein [Streptococcus porcinus str. Jelinkova 176]
gi|332314220|gb|EGJ27205.1| VRR-NUC domain protein [Streptococcus porcinus str. Jelinkova 176]
Length = 117
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 46 NGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRM 94
+ F++E+K +GRL QK+ I + V S E+ +
Sbjct: 66 DAKAFFIEVKNEKGRLRPEQKKFIENMQKRGALAGVARSVEDALEIIND 114
>gi|134300454|ref|YP_001113950.1| hypothetical protein Dred_2615 [Desulfotomaculum reducens MI-1]
gi|134053154|gb|ABO51125.1| conserved hypothetical protein [Desulfotomaculum reducens MI-1]
Length = 121
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 36 GCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
G D +T NG +VE+K++ GRL Q+ + + V S E+ + R+
Sbjct: 59 GFSDLFGVTENGKAVFVEVKSATGRLRQEQENFLKRMRQMGAYAGVARSPEDAERIFRVA 118
Query: 96 E 96
E
Sbjct: 119 E 119
>gi|332532199|ref|ZP_08408080.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
ANT/505]
gi|332038297|gb|EGI74742.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
ANT/505]
Length = 671
Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 35 RGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVD 89
G PD ++I NG + E+K +L Q I L V + + VD
Sbjct: 509 DGYPDLMVIN-NGQVHFEEVKAPGDKLRRNQLTTIDNLKKVGFTVHIAAVKWFVD 562
>gi|167630915|ref|YP_001681414.1| hypothetical protein HM1_2894 [Heliobacterium modesticaldum Ice1]
gi|167593655|gb|ABZ85403.1| hypothetical protein HM1_2894 [Heliobacterium modesticaldum Ice1]
Length = 144
Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 6 LSEAKLEKRLVKGSKKL-DCLVFKTQF--INQRGCPDRLIITPNGAHFWVEMKTSRGRLS 62
++E + +++ K + +C +K G PD +I G E+KT+ GRL+
Sbjct: 1 MAERDIVNAIMRYLKSVPECFCWKEHGGMYGTAGLPD-IICCIKGRFIAFEVKTASGRLT 59
Query: 63 NAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
Q+ + + + ++S +V L L
Sbjct: 60 KLQEATMRKIRDAKGEAFKVTSVGDVRTVLDGLS 93
>gi|239995207|ref|ZP_04715731.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii ATCC
27126]
Length = 711
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD ++ +GA + E+K +L Q I L V V
Sbjct: 485 RDGFPDIMVF--DGALRFEEIKAPGDQLRRNQLVSIQRLQQAGFDVAV 530
>gi|238749559|ref|ZP_04611064.1| hypothetical protein yrohd0001_28770 [Yersinia rohdei ATCC 43380]
gi|238712214|gb|EEQ04427.1| hypothetical protein yrohd0001_28770 [Yersinia rohdei ATCC 43380]
Length = 178
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 34 QRGCPDRLIITPNGAHF--WVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSS----TEE 87
++G PD + P G + W+EMKT G+ + Q + + + S +
Sbjct: 80 RKGVPDLFLALPRGGYAGLWIEMKTLNGKPTPDQNHWLNKMNEIGYLATIKFSCVETAKT 139
Query: 88 VDGFLRM 94
+ ++ +
Sbjct: 140 ITEYINI 146
>gi|320166532|gb|EFW43431.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 896
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 33 NQRGCPDRLIIT--PNGA---HFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEE 87
+ G PD L++ P + ++E+K LS Q+ I LL VQV E+
Sbjct: 837 SSSGMPD-LVVWSRPESSASFIRFIEVKGPNDTLSEQQRVWIDKLLRLGLDVQVCHVVED 895
Query: 88 V 88
V
Sbjct: 896 V 896
>gi|160932560|ref|ZP_02079950.1| hypothetical protein CLOLEP_01398 [Clostridium leptum DSM 753]
gi|156868519|gb|EDO61891.1| hypothetical protein CLOLEP_01398 [Clostridium leptum DSM 753]
Length = 96
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 6 LSEAKLEKRLVKGSKKL--DCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRG-RLS 62
+ E++ + +L+K KKL C+V K+ +G PD L+I N +E K G +
Sbjct: 1 MLESQFQSKLIKELKKLFPGCIVMKSDSGYLQGIPD-LLILFNDKWAALECKQHAGAKKQ 59
Query: 63 NAQKRVIATLLLYHQKVQVL-SSTEEV 88
Q+ + + + + EEV
Sbjct: 60 PNQEYYVGKMDEMSFSRFICPENKEEV 86
>gi|300772205|ref|ZP_07082075.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33861]
gi|300760508|gb|EFK57334.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33861]
Length = 118
Score = 38.7 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 35 RGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEE 87
G PD ++ G + EMKT G++S Q++V V ++ S EE
Sbjct: 49 AGIPD-CVLIHMGNAYGFEMKTQSGKVSPEQQKVHKVWQDDGTPVYIIRSFEE 100
>gi|58261706|ref|XP_568263.1| hypothetical protein CNM02280 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134118563|ref|XP_772055.1| hypothetical protein CNBM2120 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254661|gb|EAL17408.1| hypothetical protein CNBM2120 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230436|gb|AAW46746.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 988
Score = 38.7 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 35 RGCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
G PD ++ P +VE+K LS QK I LL +V+V
Sbjct: 847 SGVPDLIVWNPQTKDARFVEVKGPGDSLSETQKIWIDVLLSSGIQVEV 894
>gi|149910747|ref|ZP_01899382.1| hypothetical protein PE36_00175 [Moritella sp. PE36]
gi|149806187|gb|EDM66166.1| hypothetical protein PE36_00175 [Moritella sp. PE36]
Length = 113
Score = 38.7 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 35 RGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLR 93
RG D + +T NG +E+KT GR+S+ Q+ + + ++ V+ S ++V L
Sbjct: 46 RGTADIIGMTCNGKFLAIEVKTPTGRISDHQRMWLKRVAMHGGLAAVVRSIDDVKASLN 104
>gi|254304001|ref|ZP_04971359.1| hypothetical protein FNP_1670 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148324193|gb|EDK89443.1| hypothetical protein FNP_1670 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 107
Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKT--QFINQRGCPDRLIITPNGAHFWVEMK-TSRGRLS 62
L E +E ++ K K FK G PD ++ NG +E+K T G +S
Sbjct: 13 LKEKAVENKIKKWLKDKGYWFFKVHGSIFQPAGIPD-ILACVNGKFVAIEVKRTKGGVVS 71
Query: 63 NAQKRVIATLLLYHQKVQVLSSTEEVDGFLRM 94
QK I + V S+ +E L+
Sbjct: 72 PLQKAQIQKIKENGGIAGVASTMDEFLEILKE 103
>gi|119774803|ref|YP_927543.1| hypothetical protein Sama_1667 [Shewanella amazonensis SB2B]
gi|119767303|gb|ABL99873.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
Length = 600
Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
+ G PD L++ +G +VE+K RL++ QK ++ L +VL
Sbjct: 530 RSGFPD-LVLIRDGQLAFVEVKGPGDRLADHQKDWLSWLGNKEMASEVLW 578
>gi|9885253|emb|CAC04165.1| hypothetical protein [Lactococcus phage phi31]
Length = 103
Score = 38.3 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 13/100 (13%)
Query: 7 SEAKLEKRLVKGSKKLDCLVFK------------TQFIN-QRGCPDRLIITPNGAHFWVE 53
SE ++ + K C+ F+ +G D P+G F++E
Sbjct: 3 SEHDIQNEIRLALTKAGCVAFRCNVGCVQTIDGRWFDTGLPKGHADLYGFRPDGQVFYIE 62
Query: 54 MKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLR 93
+K+ GR+ Q + T+ + S E+ +
Sbjct: 63 VKSEIGRVRPDQINFLETMRKNGALAGIARSVEDAMKIIN 102
>gi|308048398|ref|YP_003911964.1| VRR-NUC domain protein [Ferrimonas balearica DSM 9799]
gi|307630588|gb|ADN74890.1| VRR-NUC domain protein [Ferrimonas balearica DSM 9799]
Length = 546
Score = 38.3 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
+ G PD L++ GA VE+K L + Q+R +A L +VL
Sbjct: 489 RSGQPD-LMVVDKGALTLVEVKGPGDSLRDHQRRWLAELDRLGVASRVLW 537
>gi|229119307|ref|ZP_04248610.1| hypothetical protein bcere0017_55420 [Bacillus cereus Rock1-3]
gi|228664173|gb|EEL19711.1| hypothetical protein bcere0017_55420 [Bacillus cereus Rock1-3]
Length = 93
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQ---RGCPDRLIITPNGAHFW--VEMKTSRGR 60
+ E+ +K+++K K+ D K +Q G PD I + +E+KT G
Sbjct: 1 MRESAFQKQVIKFLKEQDVWHIKYWAGSQYTKEGIPD---ILACIDSVFHGIELKTDVGV 57
Query: 61 LSNAQKRVIATLLLYHQKVQVLSSTE 86
S Q I + + +L +
Sbjct: 58 PSKLQLYNIRKIKDSGGEAYILRPKD 83
>gi|312131691|ref|YP_003999031.1| vrr-nuc domaiN-containing protein [Leadbetterella byssophila DSM
17132]
gi|311908237|gb|ADQ18678.1| VRR-NUC domain-containing protein [Leadbetterella byssophila DSM
17132]
Length = 546
Score = 38.3 bits (88), Expect = 0.38, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 33 NQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVL 82
N RG PD L+I + +E+K+ LS+ Q + T K +VL
Sbjct: 492 NSRGMPD-LLIWDEETYELIEIKSPNDALSHQQLYWLKTFQELGIKARVL 540
>gi|168178707|ref|ZP_02613371.1| VRR-NUC domain superfamily [Clostridium botulinum NCTC 2916]
gi|182671133|gb|EDT83107.1| VRR-NUC domain superfamily [Clostridium botulinum NCTC 2916]
Length = 98
Score = 37.9 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 12 EKRLVKGSKKL-----DCLVFK-TQFI-NQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
EK+ KK FK ++ G PD +I +G +E+K G+ S
Sbjct: 4 EKKFENEIKKFLSDLPHTWFFKYWAGPYSKSGIPD-IIACVDGHFVGIEVKAPNGKPSEL 62
Query: 65 QKRVIATLLLYHQKVQVLSSTE 86
QKR + + +L +
Sbjct: 63 QKRNVRLIQECRGLGYILYPKD 84
>gi|261251368|ref|ZP_05943942.1| hypothetical protein VIA_001387 [Vibrio orientalis CIP 102891]
gi|260938241|gb|EEX94229.1| hypothetical protein VIA_001387 [Vibrio orientalis CIP 102891]
Length = 537
Score = 37.9 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 9 AKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRV 68
+ K+L+ K+ K + G PD L++ +G + WVE+K +L + Q R
Sbjct: 463 KSMPKQLIAELFKVMLQDLKLF---RNGMPD-LMLFKDGDYHWVEVKGPGDKLQDNQWRW 518
Query: 69 IATLLLYHQKVQVLS 83
I V
Sbjct: 519 IEQFHRLSVNFSVCY 533
>gi|160944093|ref|ZP_02091323.1| hypothetical protein FAEPRAM212_01595 [Faecalibacterium prausnitzii
M21/2]
gi|158444769|gb|EDP21773.1| hypothetical protein FAEPRAM212_01595 [Faecalibacterium prausnitzii
M21/2]
Length = 138
Score = 37.9 bits (87), Expect = 0.44, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 7 SEAKLEKRLVKGS-KKLDCLVFK-TQFINQR-GCPDRLIITPNGAHFWVEMKTS-RGRLS 62
SEAK++K ++ K++ +K QR G PD ++ +G + E+K G LS
Sbjct: 45 SEAKIQKDILAHLNKQVGGFWWKDAAGPYQRQGIPD-IVGCHDGHFYAFEVKRPLVGELS 103
Query: 63 NAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLE 96
Q+ + + V++S E+V E
Sbjct: 104 AIQRHTLTAINAAGGSAYVVTSVEDVRQVFERQE 137
>gi|323493387|ref|ZP_08098509.1| hypothetical protein VIBR0546_13740 [Vibrio brasiliensis LMG 20546]
gi|323312210|gb|EGA65352.1| hypothetical protein VIBR0546_13740 [Vibrio brasiliensis LMG 20546]
Length = 537
Score = 37.9 bits (87), Expect = 0.44, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
+ G PD LI+ +G WVE+K +L + Q R I+ V
Sbjct: 485 RNGMPD-LILFKDGEFEWVEVKGPGDKLQDNQWRWISHFKRLKVPFSVAY 533
>gi|284038012|ref|YP_003387942.1| VRR-NUC domain protein [Spirosoma linguale DSM 74]
gi|283817305|gb|ADB39143.1| VRR-NUC domain protein [Spirosoma linguale DSM 74]
Length = 578
Score = 37.9 bits (87), Expect = 0.46, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQK---VQVLS 83
RG PD LI G + +VE+K+ L Q + + V+V+
Sbjct: 524 TRGFPDLLIWNDQGDYSFVEVKSPTDHLGPQQLHWLEFFQTIGVQGKVVRVIW 576
>gi|296203919|ref|XP_002749127.1| PREDICTED: coiled-coil domain-containing protein MTMR15-like
[Callithrix jacchus]
Length = 1166
Score = 37.6 bits (86), Expect = 0.59, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 34 QRGCPDRLII-TPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD ++ TP+ VE+K RLS+ Q + L +V+V
Sbjct: 1104 RGGLPDLVVWNTPSHRCKLVEVKGPSDRLSHKQMIWLDELQKLGAEVEV 1152
>gi|94501331|ref|ZP_01307852.1| hypothetical protein RED65_02924 [Oceanobacter sp. RED65]
gi|94426602|gb|EAT11589.1| hypothetical protein RED65_02924 [Oceanobacter sp. RED65]
Length = 738
Score = 37.6 bits (86), Expect = 0.60, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
G PD +II NG + E+K +L Q + +L V+V
Sbjct: 514 CDGYPDLMIIDDNG-IRFEEIKAPGDQLRRNQLISLQSLKRNGFDVRV 560
>gi|71018407|ref|XP_759434.1| hypothetical protein UM03287.1 [Ustilago maydis 521]
gi|46099041|gb|EAK84274.1| hypothetical protein UM03287.1 [Ustilago maydis 521]
Length = 1179
Score = 37.6 bits (86), Expect = 0.63, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 34 QRGCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
G PD ++ +VE+K RLS QK I LL +V V
Sbjct: 1125 SSGMPDLVVWRIKDKVVRFVEVKGPGDRLSETQKVWIDVLLRAGIQVHV 1173
>gi|325479526|gb|EGC82622.1| hypothetical protein HMPREF9290_1237 [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 43
Score = 37.6 bits (86), Expect = 0.64, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 36 GCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLL 73
G PDR+I+ G +E+K QK+ + L
Sbjct: 3 GIPDRIILLTKGKIEIIEVKRPGREPRPIQKKNMDILK 40
>gi|167462181|ref|ZP_02327270.1| hypothetical protein Plarl_06425 [Paenibacillus larvae subsp.
larvae BRL-230010]
Length = 115
Score = 37.6 bits (86), Expect = 0.64, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFIN---QRGCPDRLIITPNGAHFWVEMKTSRGRLS 62
+ EA+ +K++ + + + + G PD ++ G +E+K+ GR S
Sbjct: 1 MKEAQFQKKVTNFLNAQPDIWYVKVWGGGYQRAGIPD-ILCCAKGHFIAIELKSETGRTS 59
Query: 63 NAQKRVIATLLLYHQKVQVL--SSTEEVDGFLRML 95
Q + + VL S E F+R +
Sbjct: 60 KLQDYNLNRISESGGMTIVLRPSEFEAFKRFIREV 94
>gi|269961106|ref|ZP_06175474.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834057|gb|EEZ88148.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 538
Score = 37.6 bits (86), Expect = 0.65, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
+ G PD LI +G W+E+K +L + Q R I + V
Sbjct: 485 RNGMPD-LIAFKDGKFEWIEVKGPGDKLQDNQWRWIKEFNRLNVPFSVCY 533
>gi|153833312|ref|ZP_01985979.1| VRR-NUC domain family [Vibrio harveyi HY01]
gi|148870448|gb|EDL69369.1| VRR-NUC domain family [Vibrio harveyi HY01]
Length = 538
Score = 37.6 bits (86), Expect = 0.65, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
+ G PD LI +G W+E+K +L + Q R I + V
Sbjct: 485 RNGMPD-LIAFKDGKFEWIEVKGPGDKLQDNQWRWIKEFNRLNVPFSVCY 533
>gi|198415862|ref|XP_002123827.1| PREDICTED: similar to Coiled-coil domain-containing protein MTMR15
[Ciona intestinalis]
Length = 823
Score = 37.6 bits (86), Expect = 0.67, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD L++ + ++ VE+K RLS Q+ I L+ V+V
Sbjct: 764 RSGLPD-LVVWNDISYKLVEVKGPNDRLSTNQRVWIHKLMELGVDVEV 810
>gi|192292162|ref|YP_001992767.1| VRR-NUC domain protein [Rhodopseudomonas palustris TIE-1]
gi|192285911|gb|ACF02292.1| VRR-NUC domain protein [Rhodopseudomonas palustris TIE-1]
Length = 161
Score = 37.2 bits (85), Expect = 0.71, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 33 NQRGCPDRLIITPNGAHFWVEM-KTSRGRLSNAQKRVIATLLLYH 76
G PD + + +++EM K GR+S Q+ ++A L
Sbjct: 82 GAAGVPD-IFVMWRKQVYFLEMKKAKGGRVSAEQRVMMARLRGAG 125
>gi|291403999|ref|XP_002718265.1| PREDICTED: myotubularin related protein 15 [Oryctolagus cuniculus]
Length = 1033
Score = 37.2 bits (85), Expect = 0.73, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 34 QRGCPDRLIITPNGAHFW--VEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD L++ + +H + VE+K RLS Q + L V+V
Sbjct: 971 RGGLPD-LVVWSSRSHRFKLVEVKGPNDRLSPKQVIWLDELQRLGAAVEV 1019
>gi|149410836|ref|XP_001509834.1| PREDICTED: similar to KIAA1018 protein [Ornithorhynchus anatinus]
Length = 1036
Score = 37.2 bits (85), Expect = 0.77, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 22 LDCLVFKTQFI---NQRGCPDRLII-TPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQ 77
L + K + G PD ++ T + VE+K RLS+ Q + L
Sbjct: 959 LSGVCRKLVTDLRHCRGGLPDLVVWNTQDKRFKLVEVKGPNDRLSHKQMIWLDELQKLGA 1018
Query: 78 KVQV 81
+V+V
Sbjct: 1019 EVEV 1022
>gi|88807659|ref|ZP_01123171.1| primosomal protein N' (replication factor Y) [Synechococcus sp. WH
7805]
gi|88788873|gb|EAR20028.1| primosomal protein N' (replication factor Y) [Synechococcus sp. WH
7805]
Length = 762
Score = 37.2 bits (85), Expect = 0.77, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 31 FINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYH 76
++ QRG P +P +WVE+ + G R A L
Sbjct: 123 WLGQRGQP----ASPGRKLWWVELTRTPGDPHPKAARQHALLENLK 164
>gi|156977313|ref|YP_001448219.1| hypothetical protein VIBHAR_06099 [Vibrio harveyi ATCC BAA-1116]
gi|156528907|gb|ABU73992.1| hypothetical protein VIBHAR_06099 [Vibrio harveyi ATCC BAA-1116]
Length = 537
Score = 37.2 bits (85), Expect = 0.81, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
+ G PD LI +G W+E+K +L + Q R I + V
Sbjct: 485 RNGMPD-LIAFKDGKFEWIEVKGPGDKLQDNQWRWIKEFNRLNVPFSVCY 533
>gi|315127113|ref|YP_004069116.1| hypothetical protein PSM_A2044 [Pseudoalteromonas sp. SM9913]
gi|315015627|gb|ADT68965.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
Length = 718
Score = 37.2 bits (85), Expect = 0.83, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 35 RGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVD 89
G PD L+I N A + E+K +L Q I L KV + + VD
Sbjct: 496 DGYPD-LMIVDNSAVHFEEVKAPGDKLKRNQLVSIDNLKNSGFKVNIAAVKWYVD 549
>gi|323499180|ref|ZP_08104158.1| hypothetical protein VISI1226_10972 [Vibrio sinaloensis DSM 21326]
gi|323315813|gb|EGA68846.1| hypothetical protein VISI1226_10972 [Vibrio sinaloensis DSM 21326]
Length = 541
Score = 37.2 bits (85), Expect = 0.84, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
+ G PD LI +G W+E+K +L + Q R I + V
Sbjct: 485 RNGMPD-LIAFKDGQFEWIEVKGPGDKLQDNQWRWIKQFNRLNVPFAVCY 533
>gi|58257674|dbj|BAA76862.3| KIAA1018 protein [Homo sapiens]
Length = 1040
Score = 36.8 bits (84), Expect = 0.96, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 34 QRGCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD ++ HF VE+K RLS+ Q +A L +V+V
Sbjct: 978 RGGLPDLVVWNSQSRHFKLVEVKGPNDRLSHKQMIWLAELQKLGAEVEV 1026
>gi|297696162|ref|XP_002825277.1| PREDICTED: LOW QUALITY PROTEIN: coiled-coil domain-containing protein
MTMR15-like [Pongo abelii]
Length = 1017
Score = 36.8 bits (84), Expect = 0.98, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 34 QRGCPDRLIITPNGAHFW--VEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD L++ + +H + VE+K RLS+ Q +A L V+V
Sbjct: 955 RGGLPD-LVVWNSQSHSFKLVEVKGPNDRLSHKQMIWLAELQKLGADVEV 1003
>gi|114659867|ref|XP_510266.2| PREDICTED: fanconi-associated nuclease 1 isoform 3 [Pan troglodytes]
Length = 1017
Score = 36.8 bits (84), Expect = 0.98, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 34 QRGCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD ++ HF VE+K RLS+ Q +A L +V+V
Sbjct: 955 RGGLPDLVVWNSQSRHFKLVEVKGPNDRLSHKQMIWLAELQKLGAEVEV 1003
>gi|168278791|dbj|BAG11275.1| myotubularin-related protein 15 [synthetic construct]
Length = 1017
Score = 36.8 bits (84), Expect = 0.99, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 34 QRGCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD ++ HF VE+K RLS+ Q +A L +V+V
Sbjct: 955 RGGLPDLVVWNSQSRHFKLVEVKGPNDRLSHKQMIWLAELQKLGAEVEV 1003
>gi|226246523|ref|NP_055782.3| fanconi-associated nuclease 1 isoform a [Homo sapiens]
gi|160410012|sp|Q9Y2M0|FAN1_HUMAN RecName: Full=Fanconi-associated nuclease 1; AltName:
Full=FANCD2/FANCI-associated nuclease 1; AltName:
Full=Myotubularin-related protein 15
gi|119581661|gb|EAW61257.1| KIAA1018 [Homo sapiens]
Length = 1017
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 34 QRGCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD ++ HF VE+K RLS+ Q +A L +V+V
Sbjct: 955 RGGLPDLVVWNSQSRHFKLVEVKGPNDRLSHKQMIWLAELQKLGAEVEV 1003
>gi|300390584|gb|ADK11100.1| fanconi anemia associated nuclease 1 [Homo sapiens]
Length = 1017
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 34 QRGCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD ++ HF VE+K RLS+ Q +A L +V+V
Sbjct: 955 RGGLPDLVVWNSQSRHFKLVEVKGPNDRLSHKQMIWLAELQKLGAEVEV 1003
>gi|260770417|ref|ZP_05879350.1| hypothetical protein VFA_003484 [Vibrio furnissii CIP 102972]
gi|260615755|gb|EEX40941.1| hypothetical protein VFA_003484 [Vibrio furnissii CIP 102972]
Length = 538
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
+ G PD LI+ +G W+E+K +L + Q R +A + V
Sbjct: 485 RNGMPD-LIVFKDGQFEWIEVKGPGDKLQDNQWRWMAQFTRLNVPFSVCY 533
>gi|307104714|gb|EFN52966.1| hypothetical protein CHLNCDRAFT_137359 [Chlorella variabilis]
Length = 997
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 36 GCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQVL 82
G PD L+ P E+K R RLSN Q+ I L +VL
Sbjct: 935 GMPDLLLWRPARRDAKLAEVKGPRDRLSNQQRAWINALRDAGFHAEVL 982
>gi|315181485|gb|ADT88398.1| VRR-NUC domain family [Vibrio furnissii NCTC 11218]
Length = 538
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
+ G PD LI+ +G W+E+K +L + Q R +A + V
Sbjct: 485 RNGMPD-LIVFKDGQFEWIEVKGPGDKLQDNQWRWMAQFTRLNVPFSVCY 533
>gi|153811361|ref|ZP_01964029.1| hypothetical protein RUMOBE_01753 [Ruminococcus obeum ATCC 29174]
gi|149832488|gb|EDM87572.1| hypothetical protein RUMOBE_01753 [Ruminococcus obeum ATCC 29174]
Length = 174
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 36 GCPDRLIITPNG--AHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLR 93
G PD + P G + ++EMK GRL ++QK+++ L V EE L+
Sbjct: 78 GIPDLCLPVPMGMYSGLYIEMKYDAGRLEDSQKKMLKALAAAGHYCTVCYGAEEAIRVLQ 137
Query: 94 M 94
Sbjct: 138 E 138
>gi|254450081|ref|ZP_05063518.1| hypothetical protein OA238_680 [Octadecabacter antarcticus 238]
gi|198264487|gb|EDY88757.1| hypothetical protein OA238_680 [Octadecabacter antarcticus 238]
Length = 129
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 41 LIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEE 87
LI+ +G ++E+K+ +GRLS AQ+ +L ++ + ++
Sbjct: 47 LIVLCDGRVLFLELKSLKGRLSPAQEGFRDAVLALGFGWALVRTMDD 93
>gi|291548667|emb|CBL24929.1| VRR-NUC domain [Ruminococcus torques L2-14]
Length = 118
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 8 EAKLEKRLVKGSKKLDCLVFKT---QFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
E E ++ K + K + G PD L++ +G +E+K G S
Sbjct: 4 EKNFENKVKAFLKDTGAWLLKYWGGAAYTKSGIPD-LLVCSDGCFLGIEVKAPNGEPSLL 62
Query: 65 QKRVIATLLLYHQKVQVLSSTE 86
Q + + +L +
Sbjct: 63 QLVNLKKIRESGGYGILLYPKD 84
>gi|254507913|ref|ZP_05120042.1| VRR-NUC domain family protein [Vibrio parahaemolyticus 16]
gi|219549149|gb|EED26145.1| VRR-NUC domain family protein [Vibrio parahaemolyticus 16]
Length = 536
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
+ G PD LI +G W+E+K +L + Q R V
Sbjct: 485 RSGMPD-LIAFKDGTFEWIEVKGPGDKLQDNQWRWFKEFERLDVPFSVCY 533
>gi|255282178|ref|ZP_05346733.1| VRR-NUC domain protein [Bryantella formatexigens DSM 14469]
gi|255267126|gb|EET60331.1| VRR-NUC domain protein [Bryantella formatexigens DSM 14469]
Length = 133
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 1 MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQ----FINQRGCPDRLIITPNGAHFWVEMKT 56
++ + E+ + +++K +K+ L + +++G PD + NG ++ E+K
Sbjct: 32 LQRNLPKESYYQDKIIKHIRKIFPLSVVWKEAAGAYSRQGIPD-VTAVINGRYYGFEVKR 90
Query: 57 S-RGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRM 94
G LS Q++ I + + V++ EV LR
Sbjct: 91 PFVGVLSKIQEQTIKRIRAAGGRAYVVTYPAEVTELLRE 129
>gi|332995649|gb|AEF05704.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2]
Length = 710
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
G PD I+ + + E+K +L Q I L +V V
Sbjct: 485 SDGFPD--IMIFDEKLRFEEVKAPGDQLRRNQLVSIQRLQRAGFEVAV 530
>gi|315497459|ref|YP_004086263.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB
48]
gi|315415471|gb|ADU12112.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB
48]
Length = 717
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVL 82
+ G PD L+I P G ++E+K ++ Q + L + +L
Sbjct: 486 RDGFPDLLLIGPCG-VRFIEVKGEGDQVRRHQLARLNLLRQAGFEAGIL 533
>gi|163801611|ref|ZP_02195509.1| hypothetical protein 1103602000597_AND4_09162 [Vibrio sp. AND4]
gi|159174528|gb|EDP59330.1| hypothetical protein AND4_09162 [Vibrio sp. AND4]
Length = 538
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
+ G PD LI +G W+E+K +L + Q R I + V
Sbjct: 485 RNGMPD-LIAFKDGEFEWIEVKGPGDKLQDNQWRWIKEFNRLNVPFSVCY 533
>gi|296389740|ref|ZP_06879215.1| hypothetical protein PaerPAb_16391 [Pseudomonas aeruginosa PAb1]
Length = 559
Score = 36.0 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 32 INQR-GCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVD 89
R G PD + P + VE+K RL + Q R + V V VD
Sbjct: 499 PGNRAGLPDLIQFWPAQRRYRMVEVKGPGDRLQDNQLRWLQFCREREMPVAVCYVRWHVD 558
Query: 90 G 90
Sbjct: 559 D 559
>gi|330889754|gb|EGH22415.1| hypothetical protein PSYMO_13309 [Pseudomonas syringae pv. mori
str. 301020]
Length = 567
Score = 36.0 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 30 QFINQRGCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKV---QVLSST 85
N+ G PD + P + +E+K RL ++Q R + + V V +T
Sbjct: 488 VKANRTGMPDLIQFFPEQRRYRMIEVKGPGDRLQDSQLRWLDFCAEHGMPVEVCYVQWAT 547
Query: 86 EEVDGFLRMLECY 98
E + L C+
Sbjct: 548 EHAAEVIEELACH 560
>gi|332143320|ref|YP_004429058.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
'Deep ecotype']
gi|327553342|gb|AEB00061.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
'Deep ecotype']
Length = 715
Score = 36.0 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD +++ + + + E+K +L Q I L V V
Sbjct: 485 RDGFPDIMVL--DDSLRFEEIKAPGDQLRRNQLVSIQRLQQAGFDVAV 530
>gi|15597062|ref|NP_250556.1| hypothetical protein PA1865 [Pseudomonas aeruginosa PAO1]
gi|218892178|ref|YP_002441045.1| hypothetical protein PLES_34591 [Pseudomonas aeruginosa LESB58]
gi|9947854|gb|AAG05254.1|AE004612_8 hypothetical protein PA1865 [Pseudomonas aeruginosa PAO1]
gi|218772404|emb|CAW28186.1| hypothetical protein PLES_34591 [Pseudomonas aeruginosa LESB58]
Length = 559
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 32 INQR-GCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVD 89
R G PD + P + VE+K RL + Q R + V V VD
Sbjct: 499 PGNRAGLPDLIQFWPAQRRYRMVEVKGPGDRLQDNQLRWLQFCREREMPVAVCYVRWHVD 558
Query: 90 G 90
Sbjct: 559 D 559
>gi|313110570|ref|ZP_07796455.1| hypothetical protein PA39016_002410156 [Pseudomonas aeruginosa
39016]
gi|310882957|gb|EFQ41551.1| hypothetical protein PA39016_002410156 [Pseudomonas aeruginosa
39016]
Length = 559
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 32 INQR-GCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVD 89
R G PD + P + VE+K RL + Q R + V V VD
Sbjct: 499 PGNRAGLPDLIQFWPAQRRYRMVEVKGPGDRLQDNQLRWLQFCREREMPVAVCYVRWHVD 558
Query: 90 G 90
Sbjct: 559 D 559
>gi|254240258|ref|ZP_04933580.1| hypothetical protein PA2G_00901 [Pseudomonas aeruginosa 2192]
gi|126193636|gb|EAZ57699.1| hypothetical protein PA2G_00901 [Pseudomonas aeruginosa 2192]
Length = 559
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 32 INQR-GCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVD 89
R G PD + P + VE+K RL + Q R + V V VD
Sbjct: 499 PGNRAGLPDLIQFWPAQRRYRMVEVKGPGDRLQDNQLRWLQFCREREMPVAVCYVRWHVD 558
Query: 90 G 90
Sbjct: 559 D 559
>gi|254234960|ref|ZP_04928283.1| hypothetical protein PACG_00836 [Pseudomonas aeruginosa C3719]
gi|126166891|gb|EAZ52402.1| hypothetical protein PACG_00836 [Pseudomonas aeruginosa C3719]
Length = 559
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 32 INQR-GCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVD 89
R G PD + P + VE+K RL + Q R + V V VD
Sbjct: 499 PGNRAGLPDLIQFWPAQRRYRMVEVKGPGDRLQDNQLRWLQFCREREMPVAVCYVRWHVD 558
Query: 90 G 90
Sbjct: 559 D 559
>gi|149691096|ref|XP_001491319.1| PREDICTED: similar to Coiled-coil domain-containing protein MTMR15
[Equus caballus]
Length = 1028
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 34 QRGCPDRLIITPNGAHFW--VEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD L++ + +H + VE+K RLS+ Q +A L +V+V
Sbjct: 966 RGGLPD-LVVWNSQSHRFKLVEVKGPNDRLSHKQMIWLAELQKLGAEVEV 1014
>gi|116049818|ref|YP_791375.1| hypothetical protein PA14_40370 [Pseudomonas aeruginosa UCBPP-PA14]
gi|115585039|gb|ABJ11054.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
Length = 558
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 32 INQR-GCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVD 89
R G PD + P + VE+K RL + Q R + V V VD
Sbjct: 498 PGNRAGLPDLIQFWPAQRRYRMVEVKGPGDRLQDNQLRWLQFCREREMPVAVCYVRWHVD 557
Query: 90 G 90
Sbjct: 558 D 558
>gi|254452931|ref|ZP_05066368.1| VRR-NUC domain family [Octadecabacter antarcticus 238]
gi|198267337|gb|EDY91607.1| VRR-NUC domain family [Octadecabacter antarcticus 238]
Length = 150
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 41 LIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEE 87
LI+ +G ++E+K+ +GRLS AQ+ +L ++ + ++
Sbjct: 62 LIVLCDGRVLFLELKSLKGRLSPAQEGFRDAVLALGFGWALVRTMDD 108
>gi|301777496|ref|XP_002924164.1| PREDICTED: coiled-coil domain-containing protein MTMR15-like
[Ailuropoda melanoleuca]
gi|306755801|sp|D2HNY3|FAN1_AILME RecName: Full=Fanconi-associated nuclease 1; AltName:
Full=FANCD2/FANCI-associated nuclease 1; AltName:
Full=Myotubularin-related protein 15
Length = 1025
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 34 QRGCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD ++ HF VE+K RLS+ Q + L V+V
Sbjct: 963 RGGLPDLVVWNSQSRHFKLVEVKGPNDRLSHKQMLWLDELQKLGADVEV 1011
>gi|281341974|gb|EFB17558.1| hypothetical protein PANDA_013441 [Ailuropoda melanoleuca]
Length = 1026
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 34 QRGCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD ++ HF VE+K RLS+ Q + L V+V
Sbjct: 964 RGGLPDLVVWNSQSRHFKLVEVKGPNDRLSHKQMLWLDELQKLGADVEV 1012
>gi|109080444|ref|XP_001109813.1| PREDICTED: coiled-coil domain-containing protein MTMR15-like [Macaca
mulatta]
Length = 1016
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 34 QRGCPDRLIITPNGAHFW--VEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD L++ + +H + VE+K RLS+ Q +A L +V+V
Sbjct: 954 RGGLPD-LVVWNSQSHRFKLVEVKGPNDRLSHKQMIWLAELQKLGAEVEV 1002
>gi|260576810|ref|ZP_05844794.1| VRR-NUC domain protein [Rhodobacter sp. SW2]
gi|259020953|gb|EEW24265.1| VRR-NUC domain protein [Rhodobacter sp. SW2]
Length = 130
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEE 87
G D ++I +G ++E+K+ +GRL Q+ +L ++ S ++
Sbjct: 56 HAGFADLMVIC-DGRILFLELKSPKGRLRPDQEAFRDGVLAQGFGWALVRSLDD 108
>gi|296155907|ref|ZP_06838746.1| VRR-NUC domain protein [Burkholderia sp. Ch1-1]
gi|295893413|gb|EFG73192.1| VRR-NUC domain protein [Burkholderia sp. Ch1-1]
Length = 627
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 33 NQRGCPDRLIITP-NGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
N G PD + P + +E+K RL + Q R +A + V+VL
Sbjct: 513 NCSGLPDLIRFWPAERRYELIEVKGPGDRLQDNQIRWLAYCAQHGMPVRVLD 564
>gi|319411650|emb|CBQ73694.1| conserved hypothetical protein [Sporisorium reilianum]
Length = 933
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 34 QRGCPDRLII-TPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
G PD ++ + +VE+K RLS QK I LL +VQ+
Sbjct: 879 SSGMPDLVVWRMRDKVVRFVEVKGPGDRLSETQKVWIDVLLRAGVEVQL 927
>gi|311245149|ref|XP_003121714.1| PREDICTED: fanconi-associated nuclease 1-like [Sus scrofa]
Length = 1020
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 34 QRGCPDRLIITPNGAHFW--VEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD L++ + H + VE+K RLS+ Q + L +V+V
Sbjct: 958 RGGLPD-LVVWNSQNHRFKLVEVKGPNDRLSHKQMIWLDELRRLGAEVEV 1006
>gi|241894875|ref|ZP_04782171.1| phage protein [Weissella paramesenteroides ATCC 33313]
gi|241871883|gb|EER75634.1| phage protein [Weissella paramesenteroides ATCC 33313]
Length = 112
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 14/85 (16%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIIT--PNG------------AHFW 51
+ E ++ + + +VF+ DR +T PNG F+
Sbjct: 1 MREQDIQNAIRAAVEHDGHVVFRINTGKVLTKDDRWFMTGVPNGHPDLYGFRKTDNQVFY 60
Query: 52 VEMKTSRGRLSNAQKRVIATLLLYH 76
+E+KT+ GR Q L
Sbjct: 61 IEVKTATGRPRKDQIFFHQALSNRG 85
>gi|86139831|ref|ZP_01058397.1| hypothetical protein MED193_12398 [Roseobacter sp. MED193]
gi|85823460|gb|EAQ43669.1| hypothetical protein MED193_12398 [Roseobacter sp. MED193]
Length = 131
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 41 LIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEE 87
LII G ++E+K+ +GRLS AQ+ + ++ S ++
Sbjct: 62 LIILCEGKALFLELKSLKGRLSPAQEAFRDAVTAQGFGWALVRSLDD 108
>gi|225419969|ref|ZP_03762272.1| hypothetical protein CLOSTASPAR_06310 [Clostridium asparagiforme
DSM 15981]
gi|225041391|gb|EEG51637.1| hypothetical protein CLOSTASPAR_06310 [Clostridium asparagiforme
DSM 15981]
Length = 137
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 35 RGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRM 94
G PD LI NG VE+K S GR S QK I + + V E D F +
Sbjct: 49 SGIPD-LICCVNGVMLAVEVKASNGRPSELQKLNINRINTSG-GIGVFLYPEGFDEFKNL 106
Query: 95 LE 96
++
Sbjct: 107 VK 108
>gi|62327129|ref|YP_223917.1| hypothetical protein phiJL1_ORF114 [Lactobacillus phage phiJL-1]
gi|37930146|gb|AAP74544.1| putative protein [Lactobacillus phage phiJL-1]
Length = 114
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 16 VKGSKKLDCLVFKTQFINQRGCPDRLIITP-NGAHFWVEMKTSRGRLSNAQKRVIATLLL 74
V K D F T G PD + P NG F++E+KT GR Q L
Sbjct: 30 VGKVKTADGRWFDTGLP--TGFPDLIGYKPDNGRIFFIEVKTPIGRRRKDQVNFANGLRD 87
Query: 75 YHQKVQVLSSTEEVDGFLRM 94
+ V S +E +R
Sbjct: 88 KNVIYGVARSAKEAVTIVRD 107
>gi|254254035|ref|ZP_04947352.1| hypothetical protein BDAG_03323 [Burkholderia dolosa AUO158]
gi|124898680|gb|EAY70523.1| hypothetical protein BDAG_03323 [Burkholderia dolosa AUO158]
Length = 564
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 33 NQRGCPDRLIITPN-GAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
N+ G PD + P+ + +E+K RL + Q R +A + V+V+
Sbjct: 495 NRSGLPDLVRFWPDERRYELIEVKGPGDRLQDNQTRWLAYCRAHGMPVRVVD 546
>gi|187920119|ref|YP_001889150.1| VRR-NUC domain-containing protein [Burkholderia phytofirmans PsJN]
gi|187718557|gb|ACD19780.1| VRR-NUC domain protein [Burkholderia phytofirmans PsJN]
Length = 636
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 33 NQRGCPDRLIITP-NGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
N+ G PD + P + +E+K RL + Q R +A + V+VL
Sbjct: 510 NRSGLPDLIRFWPAERRYELIEVKGPGDRLQDNQIRWLAYCAQHGMPVRVLD 561
>gi|91778919|ref|YP_554127.1| hypothetical protein Bxe_B1179 [Burkholderia xenovorans LB400]
gi|91691579|gb|ABE34777.1| conserved hypothetical protein [Burkholderia xenovorans LB400]
Length = 623
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 33 NQRGCPDRLIITP-NGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
N+ G PD + P + +E+K RL + Q R +A + V+VL
Sbjct: 509 NRSGLPDLIRFWPAERRYELIEVKGPGDRLQDNQIRWLAYCAQHGMPVRVLD 560
>gi|257485315|ref|ZP_05639356.1| hypothetical protein PsyrptA_18773 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 440
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 30 QFINQRGCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKV---QVLSST 85
N+ G PD + P + +E+K RL + Q R + + V V +T
Sbjct: 361 VKANRTGMPDLIQFFPEQRRYRMIEVKGPGDRLQDNQLRWLDFCAEHGMPVEVCYVQWAT 420
Query: 86 EEVDGFLRMLECY 98
E + L C+
Sbjct: 421 EHAADVIEELACH 433
>gi|254441219|ref|ZP_05054712.1| VRR-NUC domain superfamily [Octadecabacter antarcticus 307]
gi|198251297|gb|EDY75612.1| VRR-NUC domain superfamily [Octadecabacter antarcticus 307]
Length = 138
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEE 87
G D LII +G ++E+K +GRL +AQ+ + ++ S ++
Sbjct: 63 HAGFADLLIIC-DGRVLFLELKAPKGRLRSAQEAFRDAVFSQGFGWALVRSLDD 115
>gi|323528049|ref|YP_004230201.1| VRR-NUC domain-containing protein [Burkholderia sp. CCGE1001]
gi|323385051|gb|ADX57141.1| VRR-NUC domain-containing protein [Burkholderia sp. CCGE1001]
Length = 610
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 33 NQRGCPDRLIITP-NGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
N+ G PD + P + +E+K RL + Q R +A + + V+VL
Sbjct: 528 NRSGLPDLIRFWPAERRYELIEVKGPGDRLQDNQIRWLAYCVQHGMPVRVLD 579
>gi|327284500|ref|XP_003226975.1| PREDICTED: fanconi-associated nuclease 1-like [Anolis carolinensis]
Length = 1126
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 33 NQRGCPDRLII-TPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
++ G PD ++ T +G + VE+K RLS+ Q +A L V+V
Sbjct: 1063 SRGGLPDLVVWRTEDGQYKVVEVKGPNDRLSHKQMLWLAELQELGAAVEV 1112
>gi|109898663|ref|YP_661918.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
T6c]
gi|109700944|gb|ABG40864.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
T6c]
Length = 769
Score = 35.2 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 35 RGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
G PD ++I N + E+K +L Q I L V V
Sbjct: 546 DGYPDLMVI-ENQQLRFEEVKAPGDQLRANQLVSIDALQNAGFNVGV 591
>gi|126277238|ref|XP_001373737.1| PREDICTED: similar to novel lectin C-type domain containing protein
[Monodelphis domestica]
Length = 1112
Score = 35.2 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 34 QRGCPDRLIITPNGAHFW--VEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD L++ + + VE+K RLS+ Q + L +V+V
Sbjct: 1050 RGGLPD-LVVWNTQKNLFKLVEVKGPNDRLSHKQMIWLDELQQLGAQVEV 1098
>gi|289627260|ref|ZP_06460214.1| hypothetical protein PsyrpaN_19339 [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289650906|ref|ZP_06482249.1| hypothetical protein Psyrpa2_24680 [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330866929|gb|EGH01638.1| hypothetical protein PSYAE_06657 [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 567
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 30 QFINQRGCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKV---QVLSST 85
N+ G PD + P + +E+K RL + Q R + + V V +T
Sbjct: 488 VKANRTGMPDLIQFFPEQRRYRMIEVKGPGDRLQDNQLRWLDFCAEHGMPVEVCYVQWAT 547
Query: 86 EEVDGFLRMLECY 98
E + L C+
Sbjct: 548 EHAADVIEELACH 560
>gi|91790789|ref|YP_551740.1| hypothetical protein Bpro_4970 [Polaromonas sp. JS666]
gi|91700669|gb|ABE46842.1| hypothetical protein Bpro_4970 [Polaromonas sp. JS666]
Length = 177
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 14/95 (14%)
Query: 11 LEKRLV---KGSKKLDCLVFKTQFINQR-GCPDRLIITPNGAHFW----VEMKTSRGRLS 62
+ + LV G + K + + + G PD + P W +E+K+ GRL
Sbjct: 71 ILQYLVHVPNGGARSKGEAGKLKAMGTKPGIPD--FVLPRARGSWRGLAIELKSDTGRLK 128
Query: 63 NAQKRVIATLLLYHQKVQVLSSTEE----VDGFLR 93
QK + L V S E V FL
Sbjct: 129 EEQKFWLRGLEAEGYLTSVCRSLEAFEALVLAFLN 163
>gi|330988154|gb|EGH86257.1| hypothetical protein PLA107_24225 [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331010816|gb|EGH90872.1| hypothetical protein PSYTB_14223 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 567
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 30 QFINQRGCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKV---QVLSST 85
N+ G PD + P + +E+K RL + Q R + + V V +T
Sbjct: 488 VKANRTGMPDLIQFFPEQRRYRMIEVKGPGDRLQDNQLRWLDFCAEHGMPVEVCYVQWAT 547
Query: 86 EEVDGFLRMLECY 98
E + L C+
Sbjct: 548 EHAADVIEELACH 560
>gi|298487457|ref|ZP_07005501.1| hypothetical protein PSA3335_2911 [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298157972|gb|EFH99048.1| hypothetical protein PSA3335_2911 [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 567
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 30 QFINQRGCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKV---QVLSST 85
N+ G PD + P + +E+K RL + Q R + + V V +T
Sbjct: 488 VKANRTGMPDLIQFFPEQRRYRMIEVKGPGDRLQDNQLRWLDFCAEHGMPVEVCYVQWAT 547
Query: 86 EEVDGFLRMLECY 98
E + L C+
Sbjct: 548 EHAADVIEELACH 560
>gi|261599115|ref|YP_003257363.1| hypothetical protein BPLAN_p003 [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497772|gb|ACX84221.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 144
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 34 QRGCPDRLIITP--NGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEE---- 87
+ G PD L+ P +E K +L+ QK +I+ L Y KV V + ++
Sbjct: 72 RPGVPDILVPFPQQGNTGMALEFKIKPNKLTENQKNIISILNSYKWKVYVCYNFDQAKNN 131
Query: 88 VDGFLRMLE 96
+D +L+M++
Sbjct: 132 IDQYLKMID 140
>gi|152989195|ref|YP_001348784.1| hypothetical protein PSPA7_3424 [Pseudomonas aeruginosa PA7]
gi|150964353|gb|ABR86378.1| hypothetical protein PSPA7_3424 [Pseudomonas aeruginosa PA7]
Length = 549
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 32 INQR-GCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
R G PD + P + VE+K RL + Q R + V V
Sbjct: 489 PGNRAGLPDLIQFWPAQRRYRMVEVKGPGDRLQDNQLRWLQFCRERDMPVAVCY 542
>gi|71734017|ref|YP_275199.1| hypothetical protein PSPPH_3020 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71554570|gb|AAZ33781.1| conserved hypothetical protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320328333|gb|EFW84337.1| hypothetical protein PsgRace4_20606 [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330878408|gb|EGH12557.1| hypothetical protein Pgy4_12616 [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 567
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 30 QFINQRGCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKV---QVLSST 85
N+ G PD + P + +E+K RL + Q R + + V V +T
Sbjct: 488 VKANRTGMPDLIQFFPEQRRYRMIEVKGPGDRLQDNQLRWLDFCAEHGMPVEVCYVQWAT 547
Query: 86 EEVDGFLRMLECY 98
E + L C+
Sbjct: 548 EHAADVIEELACH 560
>gi|290891512|ref|ZP_06554570.1| hypothetical protein AWRIB429_1960 [Oenococcus oeni AWRIB429]
gi|290478861|gb|EFD87527.1| hypothetical protein AWRIB429_1960 [Oenococcus oeni AWRIB429]
Length = 118
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 14/85 (16%)
Query: 6 LSEAKLEKRLVKGSKKLDCLVFKTQF------------INQ-RGCPDRLIITP-NGAHFW 51
+SE ++ + K VF+T G PD P + F+
Sbjct: 1 MSEHSIQDDVRVALSKYGYKVFRTAAGKIKMLAGGYFDPGMPNGWPDLTGFNPVDHTIFF 60
Query: 52 VEMKTSRGRLSNAQKRVIATLLLYH 76
+EMK+ G+ + Q L Y
Sbjct: 61 IEMKSPIGKPRDDQITFHKFLKKYG 85
>gi|182418913|ref|ZP_02950170.1| PmgM [Clostridium butyricum 5521]
gi|237669030|ref|ZP_04529014.1| VRR-NUC domain protein [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182377196|gb|EDT74764.1| PmgM [Clostridium butyricum 5521]
gi|237657378|gb|EEP54934.1| VRR-NUC domain protein [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 130
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 35 RGCPDRLIITPNGAH----FWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDG 90
G PD I+ P G ++E+KT + + + Q+ I L + V+V E
Sbjct: 51 AGVPD--IVLPVGRGGYFGLYIELKTGKNKTTVKQQGWIKRLKDNNYCVEVCYGWIEARD 108
Query: 91 FLR 93
+
Sbjct: 109 VVE 111
>gi|170099978|ref|XP_001881207.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643886|gb|EDR08137.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 763
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 2 RTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDR------LIITPNGAHFWVEMK 55
+ +++ + L +++ D I+ G R L+I P+G F+++
Sbjct: 663 QREFMRTGAWDSPLKTTAEERDAYARVLTSIHNAGVHHRDIRGFNLMINPDGKVFFIDF- 721
Query: 56 TSRGRLSN---AQKRVIATL 72
R +L+ Q+ + L
Sbjct: 722 -DRAKLNPSEWQQESEHSRL 740
>gi|56750814|ref|YP_171515.1| hypothetical protein syc0805_c [Synechococcus elongatus PCC 6301]
gi|81299537|ref|YP_399745.1| hypothetical protein Synpcc7942_0726 [Synechococcus elongatus PCC
7942]
gi|56685773|dbj|BAD78995.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81168418|gb|ABB56758.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
Length = 120
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 40 RLIITPN--GAHFW----VEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFL 92
R+ ITP+ G +E+KT GR++ Q+ I + + V S ++ + +
Sbjct: 56 RVTITPDMVGQTIALFTAIEVKTPTGRVTPEQQSFIDFVQRSGGRAGVARSMQDANKII 114
>gi|315038324|ref|YP_004031892.1| hypothetical protein LA2_05690 [Lactobacillus amylovorus GRL 1112]
gi|312276457|gb|ADQ59097.1| hypothetical protein LA2_05690 [Lactobacillus amylovorus GRL 1112]
Length = 139
Score = 34.9 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 19 SKKLDCLVFKTQFINQRGCPDRL-IITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQ 77
K FK + G PD + + F++E+K +GR+ Q L H
Sbjct: 52 IKTQSGSYFKGV---ENGTPDLIGYRWRDKQIFFIEVKAPKGRIRPDQLAYHQDL--MHH 106
Query: 78 KV 79
V
Sbjct: 107 NV 108
>gi|47220527|emb|CAG05553.1| unnamed protein product [Tetraodon nigroviridis]
Length = 986
Score = 34.9 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 34 QRGCPDRLII-TPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD ++ T + VE+K RLS Q+ + L V+V
Sbjct: 924 RAGLPDLVVWNTSENTYKLVEVKGPSDRLSQKQQIWLDELQKLGADVEV 972
>gi|330505342|ref|YP_004382211.1| hypothetical protein MDS_4428 [Pseudomonas mendocina NK-01]
gi|328919628|gb|AEB60459.1| hypothetical protein MDS_4428 [Pseudomonas mendocina NK-01]
Length = 543
Score = 34.9 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 33 NQRGCPDRLIITP-NGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
N+ G PD + P G + +E+K RL + QKR +A + V V
Sbjct: 487 NRAGMPDLIQFWPSEGRYRMIEVKGPGDRLQDNQKRWLAFCAEHGMPVSVCY 538
>gi|186474090|ref|YP_001861432.1| VRR-NUC domain-containing protein [Burkholderia phymatum STM815]
gi|184196422|gb|ACC74386.1| VRR-NUC domain protein [Burkholderia phymatum STM815]
Length = 571
Score = 34.9 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 33 NQRGCPDRLIITP-NGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
N+ G PD + P + +E+K RL + Q R +A + + V+VL
Sbjct: 500 NRSGLPDLIRFWPRERRYELIEVKGPGDRLQDNQIRWLAYCVQHDMPVRVLD 551
>gi|227877437|ref|ZP_03995505.1| phage protein [Lactobacillus crispatus JV-V01]
gi|227862941|gb|EEJ70392.1| phage protein [Lactobacillus crispatus JV-V01]
Length = 125
Score = 34.9 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 16 VKGSKKLDCLVFKTQFINQRGCPDRL-IITPNGAHFWVEMKTSRGRLSNAQKRVIATLLL 74
V K D F T N G PD + +++E+K +GR+ Q L+
Sbjct: 35 VGKIKMQDGRFFNTGLPN--GFPDLFGWRWSDKQFYFIEVKAPKGRIRPDQLAFHQDLMH 92
Query: 75 YH 76
Sbjct: 93 RK 94
>gi|78062481|ref|YP_372389.1| hypothetical protein Bcep18194_B1631 [Burkholderia sp. 383]
gi|77970366|gb|ABB11745.1| hypothetical protein Bcep18194_B1631 [Burkholderia sp. 383]
Length = 564
Score = 34.9 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 33 NQRGCPDRLIITPN-GAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVL---SSTEEV 88
N+ G PD + P + VE+K RL + Q R +A + + V+V+ + E V
Sbjct: 495 NRSGLPDLVRFWPGERRYELVEVKGPGDRLQDNQTRWLAYCVAHGIPVRVIDVEWAGEGV 554
>gi|163839981|ref|YP_001624386.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
gi|162953457|gb|ABY22972.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
Length = 1073
Score = 34.9 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 32 INQR-----GCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATL 72
R G DRL +T G V++KT + + + AQ L
Sbjct: 932 PGARIAALKGIVDRLELTAEGTLIVVDLKTGKNKPTAAQVEQHPQL 977
>gi|59711938|ref|YP_204714.1| hypothetical protein VF_1331 [Vibrio fischeri ES114]
gi|59480039|gb|AAW85826.1| hypothetical protein VF_1331 [Vibrio fischeri ES114]
Length = 181
Score = 34.9 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 10/59 (16%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLL-YHQKVQVLSSTEEVDGF 91
G P+ + P+G+ +V+++ + LS A+ ++ + +V+++ E +
Sbjct: 105 TAGEPELFLFKPDGSLLFVKVQKAGKHLSEAELICLSNIKSVLECEVEIVYVMEGSKTY 163
>gi|295699629|ref|YP_003607522.1| VRR-NUC domain protein [Burkholderia sp. CCGE1002]
gi|295438842|gb|ADG18011.1| VRR-NUC domain protein [Burkholderia sp. CCGE1002]
Length = 589
Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 33 NQRGCPDRLIITP-NGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
N+ G PD + P + +E+K RL + Q R +A + V+V+
Sbjct: 514 NRSGLPDLIRFWPAERRYELIEVKGPGDRLQDNQIRWLAYCAQHGMPVRVVD 565
>gi|209521499|ref|ZP_03270203.1| VRR-NUC domain protein [Burkholderia sp. H160]
gi|209498059|gb|EDZ98210.1| VRR-NUC domain protein [Burkholderia sp. H160]
Length = 589
Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 33 NQRGCPDRLIITP-NGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
N+ G PD + P + +E+K RL + Q R +A + V+V+
Sbjct: 514 NRSGLPDLIRFWPAERRYELIEVKGPGDRLQDNQIRWLAYCAQHGMPVRVVD 565
>gi|197334674|ref|YP_002156126.1| hypothetical protein VFMJ11_1407 [Vibrio fischeri MJ11]
gi|197316164|gb|ACH65611.1| conserved hypothetical protein [Vibrio fischeri MJ11]
Length = 181
Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 10/59 (16%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLL-YHQKVQVLSSTEEVDGF 91
G P+ + P+G+ +V+++ + LS A+ ++ + +V+++ E +
Sbjct: 105 TAGEPELFLFKPDGSLLFVKVQKAGKHLSEAELICLSNIKSVLECEVEIVYVMEGSKTY 163
>gi|291560630|emb|CBL39430.1| VRR-NUC domain [butyrate-producing bacterium SSC/2]
Length = 151
Score = 34.9 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 35 RGCPDRLIITPNGA--HFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFL 92
G PD + P G ++EMK GRL QK + Y V V S E +
Sbjct: 62 AGVPDLHLPVPKGQYASLYIEMKYGDGRLQKEQKEFLKQAADYGNFVAVCYSQEIALKVI 121
Query: 93 RM 94
Sbjct: 122 ED 123
>gi|307725794|ref|YP_003909007.1| VRR-NUC domain-containing protein [Burkholderia sp. CCGE1003]
gi|307586319|gb|ADN59716.1| VRR-NUC domain-containing protein [Burkholderia sp. CCGE1003]
Length = 668
Score = 34.5 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 25 LVFKTQFINQRGCPDRLIITP-NGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
+ + N+ G PD + P + +E+K RL + Q R + + + V+VL
Sbjct: 541 RLLRDVRANRSGLPDLIRFWPAERRYELIEVKGPGDRLQDNQIRWLTYCVQHGMPVRVLD 600
>gi|91225498|ref|ZP_01260620.1| hypothetical protein V12G01_09225 [Vibrio alginolyticus 12G01]
gi|91189861|gb|EAS76134.1| hypothetical protein V12G01_09225 [Vibrio alginolyticus 12G01]
Length = 537
Score = 34.5 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
+ G PD LI W+E+K +L + Q R I + V
Sbjct: 485 RNGMPD-LIAFKGNEFEWIEVKGPGDKLQDNQWRWIKEFTRLNVPFAVCY 533
>gi|294868558|ref|XP_002765580.1| hypothetical protein Pmar_PMAR013643 [Perkinsus marinus ATCC 50983]
gi|239865659|gb|EEQ98297.1| hypothetical protein Pmar_PMAR013643 [Perkinsus marinus ATCC 50983]
Length = 707
Score = 34.5 bits (78), Expect = 4.8, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 36 GCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTE 86
G PD L + +VE+K LS Q+ IA L+ + E
Sbjct: 644 GMPD-LTLRQGQRVRFVEVKGPGDDLSARQRGWIAELMRCGADAEAAYIVE 693
>gi|313885426|ref|ZP_07819176.1| conserved hypothetical protein [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619156|gb|EFR30595.1| conserved hypothetical protein [Eremococcus coleocola
ACS-139-V-Col8]
Length = 66
Score = 34.5 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 35 RGCPDRLIITPNGAHFWVEMKTSRGRL-SNAQKRVIATLLLYHQKVQVLSSTEEV 88
G PD L G +E+K +G + S QK I + V +S E V
Sbjct: 3 AGTPDILACL-KGRFIGIEVKKPKGGIVSPLQKLKIKQIQNAGGIAFVANSLEVV 56
>gi|73951017|ref|XP_536169.2| PREDICTED: similar to C01G5.8 isoform 1 [Canis familiaris]
gi|73951019|ref|XP_856650.1| PREDICTED: similar to C01G5.8 isoform 2 [Canis familiaris]
gi|73951021|ref|XP_856688.1| PREDICTED: similar to C01G5.8 isoform 3 [Canis familiaris]
Length = 1029
Score = 34.5 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 34 QRGCPDRLIITPNG-AHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD ++ VE+K RLS+ Q + L +V+V
Sbjct: 967 RGGLPDLVVWNSQSHRVKLVEVKGPNDRLSHKQMIWLDELQKLGAEVEV 1015
>gi|256851384|ref|ZP_05556773.1| VRR-NUC domain-containing protein [Lactobacillus jensenii
27-2-CHN]
gi|260660808|ref|ZP_05861723.1| VRR-NUC domain-containing protein [Lactobacillus jensenii
115-3-CHN]
gi|260664089|ref|ZP_05864942.1| VRR-NUC domain-containing protein [Lactobacillus jensenii
SJ-7A-US]
gi|282933167|ref|ZP_06338554.1| phage protein [Lactobacillus jensenii 208-1]
gi|256616446|gb|EEU21634.1| VRR-NUC domain-containing protein [Lactobacillus jensenii
27-2-CHN]
gi|260548530|gb|EEX24505.1| VRR-NUC domain-containing protein [Lactobacillus jensenii
115-3-CHN]
gi|260561975|gb|EEX27944.1| VRR-NUC domain-containing protein [Lactobacillus jensenii
SJ-7A-US]
gi|281302671|gb|EFA94886.1| phage protein [Lactobacillus jensenii 208-1]
Length = 118
Score = 34.5 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 16 VKGSKKLDCLVFKTQFINQRGCPD----RLIITPNGAHFWVEMKTSRGRLSNAQKRVIAT 71
V K+ D F T N G PD R I + +++E+K+ G++ + Q R
Sbjct: 28 VGSVKQADGRWFSTGLPN--GYPDLHGTRWI---DNQSYFIEVKSPTGKIRDDQMRFHQF 82
Query: 72 LLLYHQKV 79
L V
Sbjct: 83 L--MQHNV 88
>gi|330820573|ref|YP_004349435.1| hypothetical protein bgla_2g14770 [Burkholderia gladioli BSR3]
gi|327372568|gb|AEA63923.1| hypothetical protein bgla_2g14770 [Burkholderia gladioli BSR3]
Length = 557
Score = 34.5 bits (78), Expect = 5.2, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 33 NQRGCPDRLIITP-NGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
N+ G PD + P + +E+K RL + Q R + + + V+V+
Sbjct: 494 NRSGLPDLIRFWPAERRYELIEVKGPGDRLQDNQIRWLDYCVAHGVPVRVID 545
>gi|269967871|ref|ZP_06181914.1| hypothetical protein VMC_33440 [Vibrio alginolyticus 40B]
gi|269827521|gb|EEZ81812.1| hypothetical protein VMC_33440 [Vibrio alginolyticus 40B]
Length = 537
Score = 34.5 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
+ G PD LI W+E+K +L + Q R I + V
Sbjct: 485 RNGMPD-LIAFKENEFEWIEVKGPGDKLQDNQWRWIKEFTRLNVPFAVCY 533
>gi|257467662|ref|NP_001158142.1| myotubularin related protein 15 [Bos taurus]
gi|296475478|gb|DAA17593.1| myotubularin related protein 15 [Bos taurus]
Length = 1023
Score = 34.5 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 34 QRGCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD ++ + H VE+K RLS Q + L V+V
Sbjct: 961 RGGLPDLVVWSSQSHHVKLVEVKGPHDRLSQKQMIWLDELRRLGADVEV 1009
>gi|269955370|ref|YP_003325159.1| VRR-NUC domain-containing protein [Xylanimonas cellulosilytica
DSM 15894]
gi|269304051|gb|ACZ29601.1| VRR-NUC domain protein [Xylanimonas cellulosilytica DSM 15894]
Length = 123
Score = 34.5 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
G PD L ++E+K GR+S+AQK + L +V V
Sbjct: 52 TAGYPD-LHGVRRDREIYIELKRQNGRVSDAQKTWLHALEALGHEVHV 98
>gi|315650311|ref|ZP_07903383.1| VRR-NUC domain protein [Eubacterium saburreum DSM 3986]
gi|315487422|gb|EFU77732.1| VRR-NUC domain protein [Eubacterium saburreum DSM 3986]
Length = 160
Score = 34.5 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 35 RGCPDRLIITPNGAHFWVEMKTS-RGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLR 93
G PD + G ++ E+K GRLS QK I + + V++S +EV L+
Sbjct: 95 SGIPD-ITCIIRGLYYGFEIKRPFIGRLSKIQKETIDRINESGGRAYVVTSVKEVAEILK 153
Query: 94 M 94
Sbjct: 154 D 154
>gi|224062325|ref|XP_002194696.1| PREDICTED: similar to KIAA1018 protein [Taeniopygia guttata]
Length = 1099
Score = 34.5 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 34 QRGCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD L+ + HF VE+K RLS Q ++ L V+V
Sbjct: 1037 RGGLPDLLVWRSHSRHFKLVEVKGPNDRLSPKQMLWLSELHELGAAVEV 1085
>gi|157279721|ref|NP_001038546.2| fanconi-associated nuclease 1 [Danio rerio]
gi|156229743|gb|AAI51827.1| Si:ch211-201b11.2 protein [Danio rerio]
Length = 988
Score = 34.5 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 34 QRGCPDRLI-ITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD ++ T + + VE+K RLS Q+ + L V+V
Sbjct: 926 RGGLPDLVVWSTSSNKYKLVEVKGPNDRLSQKQQIWLDELRKLGADVEV 974
>gi|302385143|ref|YP_003820965.1| VRR-NUC domain protein [Clostridium saccharolyticum WM1]
gi|302195771|gb|ADL03342.1| VRR-NUC domain protein [Clostridium saccharolyticum WM1]
Length = 148
Score = 34.5 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 36 GCPDRLIITPNGAHF--WVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLR 93
G PD + P GA+ ++EMK G + QK I + V + +
Sbjct: 59 GVPDLHLPIPKGAYAGLYIEMKYDDGTVEPPQKEWIRAMKAAGHFACVCYGYDYAVKVIE 118
Query: 94 M 94
Sbjct: 119 E 119
>gi|160409999|sp|Q1LWH4|FAN1_DANRE RecName: Full=Fanconi-associated nuclease 1; AltName:
Full=FANCD2/FANCI-associated nuclease 1; AltName:
Full=Myotubularin-related protein 15
Length = 988
Score = 34.5 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 34 QRGCPDRLI-ITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD ++ T + + VE+K RLS Q+ + L V+V
Sbjct: 926 RGGLPDLVVWSTSSNKYKLVEVKGPNDRLSQKQQIWLDELRKLGADVEV 974
>gi|94733114|emb|CAK04388.1| novel protein [Danio rerio]
Length = 988
Score = 34.5 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 34 QRGCPDRLI-ITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD ++ T + + VE+K RLS Q+ + L V+V
Sbjct: 926 RGGLPDLVVWSTSSNKYKLVEVKGPNDRLSQKQQIWLDELRKLGADVEV 974
>gi|148726022|emb|CAN88260.1| novel protein [Danio rerio]
Length = 988
Score = 34.1 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 34 QRGCPDRLI-ITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
+ G PD ++ T + + VE+K RLS Q+ + L V+V
Sbjct: 926 RGGLPDLVVWSTSSNKYKLVEVKGPNDRLSQKQQIWLDELRKLGADVEV 974
>gi|194466774|ref|ZP_03072761.1| VRR-NUC domain protein [Lactobacillus reuteri 100-23]
gi|194453810|gb|EDX42707.1| VRR-NUC domain protein [Lactobacillus reuteri 100-23]
Length = 112
Score = 34.1 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 16 VKGSKKLDCLVFKTQFINQRGCPDRL-IITPNGAHFWVEMKTSRGRLSNAQKRVIATLLL 74
V K D F G PD + F++E+K +G+ Q R L
Sbjct: 27 VGSVKTPDGRFFSAGVP--SGHPDLYGFRWSDHQVFYIEVKNEKGKPRADQIRFHEMLTK 84
Query: 75 YH 76
Sbjct: 85 RE 86
>gi|325522641|gb|EGD01166.1| hypothetical protein B1M_27926 [Burkholderia sp. TJI49]
Length = 211
Score = 34.1 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 33 NQRGCPDRLIITPN-GAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
N+ G PD + P + +E+K RL + Q R +A + + V+V+
Sbjct: 142 NRSGLPDLVRFWPGERRYELIEVKGPGDRLQDNQTRWLAYCVAHGMPVRVVD 193
>gi|312977541|ref|ZP_07789289.1| phage protein [Lactobacillus crispatus CTV-05]
gi|310895972|gb|EFQ45038.1| phage protein [Lactobacillus crispatus CTV-05]
Length = 125
Score = 34.1 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 19 SKKLDCLVFKTQFINQRGCPDRL-IITPNGAHFWVEMKTSRGRLSNAQKRVIATL 72
+ +F+ PD + + F++E+K +GR+S AQ+ L
Sbjct: 39 IPTKNGGLFRGVKPGT---PDLIGYRLKDRQVFFIEVKAPKGRISQAQQLYHLDL 90
>gi|107101298|ref|ZP_01365216.1| hypothetical protein PaerPA_01002332 [Pseudomonas aeruginosa PACS2]
Length = 559
Score = 34.1 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 32 INQR-GCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVD 89
R G PD + P + VE+K RL + Q R + V V VD
Sbjct: 499 PGNRAGLPDLIQFWPAQRRYRMVEVKGPGDRLQDNQLRWLQFCCEREMPVAVCYVRWHVD 558
Query: 90 G 90
Sbjct: 559 D 559
>gi|307546495|ref|YP_003898974.1| hypothetical protein HELO_3905 [Halomonas elongata DSM 2581]
gi|307218519|emb|CBV43789.1| hypothetical protein HELO_3905 [Halomonas elongata DSM 2581]
Length = 559
Score = 34.1 bits (77), Expect = 6.9, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 33 NQRGCPDRLIITPNG---AHFWVEMKTSRGRLSNAQKRVIATLLLYH 76
N+ G PD + P+ + ++E+K RL + Q+R ++
Sbjct: 499 NRSGLPDLIQFLPDAESPRYRFIEVKGPGDRLQDNQRRWLSFFQTRG 545
>gi|221196431|ref|ZP_03569478.1| VRR-NUC domain protein [Burkholderia multivorans CGD2M]
gi|221203103|ref|ZP_03576122.1| VRR-NUC domain protein [Burkholderia multivorans CGD2]
gi|221177037|gb|EEE09465.1| VRR-NUC domain protein [Burkholderia multivorans CGD2]
gi|221182985|gb|EEE15385.1| VRR-NUC domain protein [Burkholderia multivorans CGD2M]
Length = 567
Score = 34.1 bits (77), Expect = 7.0, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 33 NQRGCPDRLIITPN-GAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
N+ G PD + P+ + +E+K RL + Q R +A + + V+V+
Sbjct: 496 NRSGLPDLVRFWPDERRYELIEVKGPGDRLQDNQTRWLAYCIAHGMPVRVVD 547
>gi|221210059|ref|ZP_03583040.1| VRR-NUC domain protein [Burkholderia multivorans CGD1]
gi|221170747|gb|EEE03213.1| VRR-NUC domain protein [Burkholderia multivorans CGD1]
Length = 567
Score = 34.1 bits (77), Expect = 7.0, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 33 NQRGCPDRLIITPN-GAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
N+ G PD + P+ + +E+K RL + Q R +A + + V+V+
Sbjct: 496 NRSGLPDLVRFWPDERRYELIEVKGPGDRLQDNQTRWLAYCIAHGMPVRVVD 547
>gi|294935346|ref|XP_002781397.1| hypothetical protein Pmar_PMAR020783 [Perkinsus marinus ATCC 50983]
gi|239891978|gb|EER13192.1| hypothetical protein Pmar_PMAR020783 [Perkinsus marinus ATCC 50983]
Length = 142
Score = 34.1 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 36 GCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTE 86
G PD L + +VE+K LS Q+ IA L+ + E
Sbjct: 79 GMPD-LTLRQGQRVRFVEVKGPGDDLSARQRGWIAELMRCGADAEAAYIVE 128
>gi|167767010|ref|ZP_02439063.1| hypothetical protein CLOSS21_01528 [Clostridium sp. SS2/1]
gi|167710985|gb|EDS21564.1| hypothetical protein CLOSS21_01528 [Clostridium sp. SS2/1]
Length = 105
Score = 34.1 bits (77), Expect = 7.5, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 6 LSEAKLEKRLVKGSKKL--DCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLS- 62
+ E+K + L K K C+V K + +G PD L+I +E+K ++
Sbjct: 10 MLESKFQSDLKKELKNKFPGCIVMKADSADIQGIPD-LLILYKDKWASLEVKKNKKASHR 68
Query: 63 NAQKRVIATLLLYHQKVQVL-SSTEEVDGFLR 93
Q + + + + E+V L
Sbjct: 69 PNQDYYVDKMEDMSFSRFIYPENKEDVLNDLE 100
>gi|332306380|ref|YP_004434231.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332173709|gb|AEE22963.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 788
Score = 33.7 bits (76), Expect = 7.7, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 11 LEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIA 70
+ L +K L + G PD ++I + + E+K +L Q I
Sbjct: 549 VASHLRAMAKNYQGL--------KDGYPDLMVI-EHQQLRFEEVKAPGDQLRANQLVSID 599
Query: 71 TLLLYHQKVQV 81
L V V
Sbjct: 600 ALQNAGFNVGV 610
>gi|238024584|ref|YP_002908816.1| hypothetical protein bglu_2g11950 [Burkholderia glumae BGR1]
gi|237879249|gb|ACR31581.1| Hypothetical protein bglu_2g11950 [Burkholderia glumae BGR1]
Length = 569
Score = 33.7 bits (76), Expect = 8.2, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 33 NQRGCPDRLIITP-NGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
N+ G PD + P + +E+K RL + Q R + + + V+V+
Sbjct: 494 NRSGLPDLIRFWPAERRYELIEVKGPGDRLQDNQIRWLDYCVGHGMPVRVID 545
>gi|83643765|ref|YP_432200.1| hypothetical protein HCH_00883 [Hahella chejuensis KCTC 2396]
gi|83631808|gb|ABC27775.1| conserved hypothetical protein [Hahella chejuensis KCTC 2396]
Length = 554
Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 33 NQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYH---QKVQVLS 83
N G PD + G + +E+K+ L QKR +AT Q VQV
Sbjct: 500 NGSGFPDLIHFPEQGGYELLEVKSPTDSLQPNQKRWMATFEKNDIPYQLVQVTW 553
>gi|158320330|ref|YP_001512837.1| VRR-NUC domain-containing protein [Alkaliphilus oremlandii
OhILAs]
gi|158140529|gb|ABW18841.1| VRR-NUC domain protein [Alkaliphilus oremlandii OhILAs]
Length = 96
Score = 33.7 bits (76), Expect = 8.7, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 6 LSEAKLEKRLVKGSKKL-DCLVFKTQF--INQRGCPDRLIITPNGAHFWVEMKTSRGRLS 62
+ E ++ ++V+ K+ + FKT G PD LI+ G +E+K + +
Sbjct: 1 MKEKAIQNKIVQYLKQQPNTWFFKTHGGMYQVAGIPD-LILCYMGHFVALEIKRPGEKPT 59
Query: 63 NAQKRVIATLLLYHQKVQVLSSTEEVDGFLRML 95
Q++V+ + V+ S +V L L
Sbjct: 60 KLQEKVLKDIQEAGGISVVVHSLLDVKSVLDTL 92
>gi|27366621|ref|NP_762148.1| hypothetical protein VV2_0165 [Vibrio vulnificus CMCP6]
gi|27358187|gb|AAO07138.1| hypothetical protein VV2_0165 [Vibrio vulnificus CMCP6]
Length = 542
Score = 33.7 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDG 90
+ G PD LI +G + W+E+K +L + Q R I V +
Sbjct: 485 RNGMPD-LIAFKDGEYQWIEVKGPGDKLQDNQWRWIHHFKQLAIPFAVCYVEHQAGE 540
>gi|37676334|ref|NP_936730.1| hypothetical protein VVA0674 [Vibrio vulnificus YJ016]
gi|37200876|dbj|BAC96700.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
Length = 542
Score = 33.7 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLY 75
+ G PD LI +G + W+E+K +L + Q R I
Sbjct: 485 RNGMPD-LIAFKDGEYQWIEVKGPGDKLQDNQWRWIHHFKQL 525
>gi|78486314|ref|YP_392239.1| hypothetical protein Tcr_1975 [Thiomicrospira crunogena XCL-2]
gi|78364600|gb|ABB42565.1| conserved hypothetical protein with DUF255 [Thiomicrospira
crunogena XCL-2]
Length = 582
Score = 33.7 bits (76), Expect = 9.1, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 10 KLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVI 69
+++ L++ ++K G P +I+TP+G F+ + + +L KRV+
Sbjct: 112 DIDQYLIQFAQK---------AAGHAGWPQHVILTPDGLPFFAFVYQPKAQLLTTLKRVV 162
Query: 70 A 70
A
Sbjct: 163 A 163
>gi|170698650|ref|ZP_02889717.1| VRR-NUC domain protein [Burkholderia ambifaria IOP40-10]
gi|170136429|gb|EDT04690.1| VRR-NUC domain protein [Burkholderia ambifaria IOP40-10]
Length = 564
Score = 33.7 bits (76), Expect = 9.5, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 33 NQRGCPDRLIITPN-GAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
N+ G PD + P + +E+K RL + Q R +A + + V+V+
Sbjct: 495 NRSGLPDLVRFWPGERRYELIEVKGPGDRLQDNQTRWLAYCVAHGIPVRVVD 546
>gi|172063296|ref|YP_001810947.1| VRR-NUC domain-containing protein [Burkholderia ambifaria MC40-6]
gi|171995813|gb|ACB66731.1| VRR-NUC domain protein [Burkholderia ambifaria MC40-6]
Length = 576
Score = 33.7 bits (76), Expect = 9.5, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 33 NQRGCPDRLIITPN-GAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
N+ G PD + P + +E+K RL + Q R +A + + V+V+
Sbjct: 507 NRSGLPDLVRFWPGERRYELIEVKGPGDRLQDNQTRWLAYCVAHGIPVRVVD 558
>gi|115358550|ref|YP_775688.1| hypothetical protein Bamb_3800 [Burkholderia ambifaria AMMD]
gi|115283838|gb|ABI89354.1| conserved hypothetical protein [Burkholderia ambifaria AMMD]
Length = 564
Score = 33.7 bits (76), Expect = 9.5, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 33 NQRGCPDRLIITPN-GAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
N+ G PD + P + +E+K RL + Q R +A + + V+V+
Sbjct: 495 NRSGLPDLVRFWPGERRYELIEVKGPGDRLQDNQTRWLAYCVAHGIPVRVVD 546
>gi|134293602|ref|YP_001117338.1| hypothetical protein Bcep1808_4916 [Burkholderia vietnamiensis G4]
gi|134136759|gb|ABO57873.1| conserved hypothetical protein [Burkholderia vietnamiensis G4]
Length = 565
Score = 33.7 bits (76), Expect = 9.5, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 33 NQRGCPDRLIITPN-GAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83
N+ G PD + P + +E+K RL + Q R +A + + V+V+
Sbjct: 496 NRSGLPDLVRFWPGERRYELIEVKGPGDRLQDNQTRWLAYCVAHGIPVRVVD 547
>gi|170690441|ref|ZP_02881608.1| VRR-NUC domain protein [Burkholderia graminis C4D1M]
gi|170144876|gb|EDT13037.1| VRR-NUC domain protein [Burkholderia graminis C4D1M]
Length = 595
Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 33 NQRGCPDRLIITP-NGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVL 82
N+ G PD + P + +E+K RL + Q R +A + + V+V+
Sbjct: 522 NRSGLPDLIRFWPAERRYELIEVKGPGDRLQDNQIRWLAYCVQHGMPVRVV 572
>gi|187933743|ref|YP_001886469.1| VRR-NUC domain protein [Clostridium botulinum B str. Eklund 17B]
gi|187721896|gb|ACD23117.1| VRR-NUC domain protein [Clostridium botulinum B str. Eklund 17B]
Length = 129
Score = 33.3 bits (75), Expect = 10.0, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 35 RGCPDRLIITPNGAH----FWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDG 90
G PD ++ P G ++E+K + + S+ QK+ I L + V+V E
Sbjct: 51 AGVPD--VVLPCGRGGYFGLYIELKVGKNKTSDNQKQWIRDLKEQNYLVEVCYGWREAAE 108
Query: 91 FL 92
L
Sbjct: 109 VL 110
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.315 0.152 0.432
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,801,593,364
Number of Sequences: 14124377
Number of extensions: 69662210
Number of successful extensions: 221836
Number of sequences better than 10.0: 421
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 183
Number of HSP's that attempted gapping in prelim test: 221373
Number of HSP's gapped (non-prelim): 566
length of query: 98
length of database: 4,842,793,630
effective HSP length: 67
effective length of query: 31
effective length of database: 3,896,460,371
effective search space: 120790271501
effective search space used: 120790271501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.9 bits)
S2: 76 (33.7 bits)