Query gi|254781196|ref|YP_003065609.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 119
No_of_seqs 120 out of 1548
Neff 3.5
Searched_HMMs 33803
Date Wed Jun 1 23:17:01 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781196.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1zau_A DNA ligase; AMP; HET: 99.7 9.7E-18 2.9E-22 133.2 7.3 68 48-115 2-69 (69)
2 >2owo_A DNA ligase; protein/DN 99.7 9.4E-17 2.8E-21 127.0 6.5 58 58-115 3-60 (180)
3 >3czp_A Putative polyphosphate 52.0 18 0.00053 17.9 3.6 42 44-85 6-47 (245)
4 >3czp_A Putative polyphosphate 42.0 22 0.00064 17.3 2.8 41 45-85 4-45 (255)
5 >3czq_A Putative polyphosphate 33.1 38 0.0011 15.8 3.1 36 50-85 19-54 (270)
6 >2iny_A Hexon protein, late pr 31.1 21 0.00063 17.4 1.3 29 11-39 64-93 (143)
7 >2obe_A Hexon, PII; trimer, do 29.2 22 0.00065 17.3 1.1 28 12-39 12-40 (43)
8 >2cvx_A Ribonucleoside-diphosp 20.8 63 0.0019 14.4 2.1 23 79-101 19-41 (45)
9 >1uxy_A MURB, uridine diphosph 19.1 65 0.0019 14.3 1.9 16 81-96 7-22 (49)
10 >3i99_A UDP-N-acetylenolpyruvo 18.3 69 0.0021 14.1 1.9 16 81-96 7-22 (38)
No 1
>>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis} (A:1-69)
Probab=99.72 E-value=9.7e-18 Score=133.23 Aligned_cols=68 Identities=31% Similarity=0.452 Sum_probs=66.6
Q ss_pred CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 13788789999999999999999999997554589856989999999999999997864268989735
Q gi|254781196|r 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115 (119)
Q Consensus 48 ak~v~~Lsk~EA~~eie~L~k~I~~Hn~~YY~~D~P~ISDaEYD~L~~eL~~LE~~~PeL~~~dSPT~ 115 (119)
++++.+|++.+++.++.+|+++|.+|+++||++|+|+|||++||+|+++|..||++||+|+.++||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~L~~~i~~~~~~YY~~~~p~isD~~YD~l~~eL~~lE~~~P~l~~~dSPTq 69 (69)
T 1zau_A 2 SSPDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPELRTPDSPTQ 69 (69)
T ss_dssp ------CCHHHHHTTHHHHHHHHHHHHHHHTTTCCCSSCTHHHHHHHHHHHHHHHTSSTTCCTTCTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 98864527299999999999999999999864899979889999999999999986901026898530
No 2
>>2owo_A DNA ligase; protein/DNA complex, ligase/DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli K12} (A:1-60,A:117-236)
Probab=99.67 E-value=9.4e-17 Score=126.97 Aligned_cols=58 Identities=29% Similarity=0.452 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9999999999999999997554589856989999999999999997864268989735
Q gi|254781196|r 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115 (119)
Q Consensus 58 EA~~eie~L~k~I~~Hn~~YY~~D~P~ISDaEYD~L~~eL~~LE~~~PeL~~~dSPT~ 115 (119)
+++.++++|++.|++|++.||++|+|+|||++||+|+++|.+||++||+|+.+|||||
T Consensus 3 ~~~~~i~~L~~~l~~~~~~YY~ld~P~isD~~YD~l~~eL~~LE~~~P~l~~~dSPTq 60 (180)
T 2owo_A 3 SIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQ 60 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHHHHHHHCTTSCCTTSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 7999999999999999998644999888889999999999999986814468999966
No 3
>>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural genomics, protein structure initiative; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1} (A:256-500)
Probab=52.04 E-value=18 Score=17.86 Aligned_cols=42 Identities=12% Similarity=-0.132 Sum_probs=36.3
Q ss_pred HHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 997213788789999999999999999999997554589856
Q gi|254781196|r 44 WLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLF 85 (119)
Q Consensus 44 ~~~kak~v~~Lsk~EA~~eie~L~k~I~~Hn~~YY~~D~P~I 85 (119)
-++.+..-..|+|++.+.+++.|...|..-+...+..+.|+|
T Consensus 6 ml~~~~~~~~~~k~e~~~~l~~L~~~L~~lQ~~l~~~~~pvi 47 (245)
T 3czp_A 6 LLDSLDLGQYLDKDAYKEQLAAEQARLAGLIRDKRFRQHSLV 47 (245)
T ss_dssp HHHTCCTTCCCCHHHHHHHHHHHHHHHHHHHHSGGGGGCEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 101479877889999999999999999999999997698099
No 4
>>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural genomics, protein structure initiative; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1} (A:1-255)
Probab=41.98 E-value=22 Score=17.32 Aligned_cols=41 Identities=20% Similarity=0.069 Sum_probs=31.9
Q ss_pred HHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCC
Q ss_conf 9721378878999999999999999999999755458-9856
Q gi|254781196|r 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLD-NPLF 85 (119)
Q Consensus 45 ~~kak~v~~Lsk~EA~~eie~L~k~I~~Hn~~YY~~D-~P~I 85 (119)
++.+..-..|+|++.+.+++.|...|...+...+..+ -|+|
T Consensus 4 l~~~d~~~~~~k~e~~~~l~~l~~~L~~lQ~~l~~~~k~~vl 45 (255)
T 3czp_A 4 FESAEVGHSIDKDTYEKAVIELREALLEAQFELKQQARFPVI 45 (255)
T ss_dssp GGGGGSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_pred CHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 000114798999999999999999999999999974996499
No 5
>>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, protein structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti 1021} (A:35-304)
Probab=33.10 E-value=38 Score=15.77 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=31.2
Q ss_pred CHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 788789999999999999999999997554589856
Q gi|254781196|r 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLF 85 (119)
Q Consensus 50 ~v~~Lsk~EA~~eie~L~k~I~~Hn~~YY~~D~P~I 85 (119)
.-..+++++.+.+++.|...+..-+...|..+.|+|
T Consensus 19 ~~~~~~k~e~k~~l~~l~~~L~~lQ~~l~~~~~~vl 54 (270)
T 3czq_A 19 YKKKLDREEYEETLTKLQIELVKVQFWXQATGKRVX 54 (270)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 434589999999999999999999999997599689
No 6
>>2iny_A Hexon protein, late protein 2; avian adenovirus, CELO, major coat protein, crystal packing, nanotechnology, viral jelly roll, viral protein; 3.90A {Fowl adenovirus 1} (A:360-502)
Probab=31.13 E-value=21 Score=17.39 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=23.8
Q ss_pred HHCCCCCCCCHHHHH-HHHHHHHHHCCCCC
Q ss_conf 201320075887724-66202056556600
Q gi|254781196|r 11 SKFENEHNITPAQWK-KLLTLEAKFLPNKR 39 (119)
Q Consensus 11 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 39 (119)
.-|.-|-|+.-+.|+ |+.|=-|+||||+-
T Consensus 64 Ni~AMEINL~AnLwr~FLySNVAlYLPD~~ 93 (143)
T 2iny_A 64 TIPSYEIDIAAATRRNFIMSNIADYLPDKY 93 (143)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTGGGSCGGG
T ss_pred CHHHEEECHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 731266638688887788877686657445
No 7
>>2obe_A Hexon, PII; trimer, double-barrel subunit, viral jellyroll, base, hypervariable tower, viral protein; 2.10A {Simian adenovirus 25} PDB: 1p2z_A* 1p30_A 2bvi_F (A:390-400,A:437-468)
Probab=29.17 E-value=22 Score=17.28 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=22.8
Q ss_pred HCCCCCCCCHHHHH-HHHHHHHHHCCCCC
Q ss_conf 01320075887724-66202056556600
Q gi|254781196|r 12 KFENEHNITPAQWK-KLLTLEAKFLPNKR 39 (119)
Q Consensus 12 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 39 (119)
-+.-|-||.-|-|+ |+.+--++|+||.-
T Consensus 12 ~~amEiNl~ANLwr~FLysNValYLPD~~ 40 (43)
T 2obe_A 12 PFAMEINIQANLWRNFLYANVALYLPDSY 40 (43)
T ss_dssp CCCEECCHHHHHHHHHHHHHTGGGSCGGG
T ss_pred CCCEEECHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 11077737788887788887787667445
No 8
>>2cvx_A Ribonucleoside-diphosphate reductase large chain 1; eukaryotic, ribonucleotide reductase, DNTP regulation, oxidoreductase; HET: DGT ADP; 2.20A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* (A:92-136)
Probab=20.80 E-value=63 Score=14.40 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=17.2
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 45898569899999999999999
Q gi|254781196|r 79 RLDNPLFTDGLYDRVSERLDALQ 101 (119)
Q Consensus 79 ~~D~P~ISDaEYD~L~~eL~~LE 101 (119)
+..+|.|||.-|+-.++--..|.
T Consensus 19 g~~aPlISdevy~iV~~nad~Ln 41 (45)
T 2cvx_A 19 GKPAPMISDDVYNIVMENKDKLN 41 (45)
T ss_dssp TEECCSSCHHHHHHHHTTHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 43334304899988887299999
No 9
>>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} (A:224-272)
Probab=19.08 E-value=65 Score=14.31 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=12.8
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 8985698999999999
Q gi|254781196|r 81 DNPLFTDGLYDRVSER 96 (119)
Q Consensus 81 D~P~ISDaEYD~L~~e 96 (119)
-+|+|+...|+.|..+
T Consensus 7 kNPiv~~~~~~~L~~~ 22 (49)
T 1uxy_A 7 KNPVVSAETAKALLSQ 22 (49)
T ss_dssp CCCEECHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 3144317799998875
No 10
>>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} (A:239-276)
Probab=18.32 E-value=69 Score=14.14 Aligned_cols=16 Identities=19% Similarity=0.503 Sum_probs=12.8
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 8985698999999999
Q gi|254781196|r 81 DNPLFTDGLYDRVSER 96 (119)
Q Consensus 81 D~P~ISDaEYD~L~~e 96 (119)
-+|+|+-..|++|..+
T Consensus 7 KNPiV~~~~~~~L~~~ 22 (38)
T 3i99_A 7 KNPVISQQAFARLQIE 22 (38)
T ss_dssp CCCEECHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
T ss_conf 2554238899875330
Done!