BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781196|ref|YP_003065609.1| DNA ligase, NAD-dependent
[Candidatus Liberibacter asiaticus str. psy62]
(119 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781196|ref|YP_003065609.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
psy62]
Length = 119
Score = 247 bits (631), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM 60
MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM
Sbjct: 1 MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM 60
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY
Sbjct: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
>gi|254780131|ref|YP_003064544.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
psy62]
Length = 119
Score = 245 bits (626), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 118/119 (99%), Positives = 119/119 (100%)
Query: 1 MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM 60
MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM
Sbjct: 1 MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM 60
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
IEVEYLVKIALHHQKWYYRLD+PLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY
Sbjct: 61 IEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
>gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus
str. psy62]
Length = 731
Score = 40.4 bits (93), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF-- 108
+ +LS +A E+ L + +H YY+ P+ D YD + R DA+ FP+L
Sbjct: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
Query: 109 -DEDHPWNTVG 118
D + P N +G
Sbjct: 69 EDPNGPLNKIG 79
>gi|254780767|ref|YP_003065180.1| lipid-A-disaccharide synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 383
Score = 27.3 bits (59), Expect = 0.088, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Query: 15 NEHNITPAQWKKLLTLEAKFLPNKRALE 42
N+ TP+QWKK+L LP RA E
Sbjct: 183 NKQRNTPSQWKKIL-----LLPGSRAQE 205
>537021.9.peg.937_1
Length = 48
Score = 26.6 bits (57), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 66 LVKIALHHQKWYYRLDNPLFTD 87
L+K+ L H Y +DNPLF
Sbjct: 24 LIKVILFHSMTGYYIDNPLFCS 45
>gi|254780508|ref|YP_003064921.1| hypothetical protein CLIBASIA_01975 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 123
Score = 24.3 bits (51), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 25 KKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGE 58
+++ TL K N LES+LD A+ V L K +
Sbjct: 65 EQIRTLHEKLALNSSLLESYLDAARVVADLFKKQ 98
>gi|254780383|ref|YP_003064796.1| endonuclease III [Candidatus Liberibacter asiaticus str. psy62]
Length = 227
Score = 21.9 bits (45), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 79 RLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L N + T G+Y + SE + +L FD P G
Sbjct: 90 KLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEG 129
>gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 468
Score = 21.6 bits (44), Expect = 4.2, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 27 LLTLEAKFLPNKRALESWLDKAKKVTSLSK 56
LL + L LE++++ KK+ ++SK
Sbjct: 186 LLNISPDHLDRHHTLENYVNIKKKIVTMSK 215
>gi|254780921|ref|YP_003065334.1| dTDP-4-dehydrorhamnose reductase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 290
Score = 21.6 bits (44), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 10 SSKFENEHNITPAQWKK 26
SK N HNI + WK+
Sbjct: 265 CSKLANTHNIRISTWKE 281
>gi|254780602|ref|YP_003065015.1| aspartate aminotransferase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 400
Score = 21.6 bits (44), Expect = 4.3, Method: Composition-based stats.
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 7 VFRSSKFENEHNITPAQWKKLLTL 30
V+R+ +F N N+ P+ +++ L +
Sbjct: 211 VYRNCQFSNIVNVEPSLYERTLVV 234
>gi|254780558|ref|YP_003064971.1| hypothetical protein CLIBASIA_02225 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 396
Score = 20.8 bits (42), Expect = 6.8, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 12/47 (25%)
Query: 18 NITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKG-EAMIEV 63
N+ PA +TL F N +L+ W+ +AKK KG EA++++
Sbjct: 192 NLLPAN----ITL--AFASNGNSLDRWMKEAKK-----KGQEAILQI 227
>gi|254780680|ref|YP_003065093.1| seryl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 430
Score = 20.8 bits (42), Expect = 7.6, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 89 LYDRVSERLDALQEQFPELFDEDH 112
L D + L+EQ P L E+H
Sbjct: 69 LVDALKNETSTLKEQLPILEKEEH 92
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,983
Number of Sequences: 1233
Number of extensions: 2722
Number of successful extensions: 13
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 119
length of database: 328,796
effective HSP length: 64
effective length of query: 55
effective length of database: 249,884
effective search space: 13743620
effective search space used: 13743620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 33 (17.3 bits)