HHsearch alignment for GI: 254781197 and conserved domain: COG0125
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism].
Probab=98.41 E-value=3.3e-07 Score=62.70 Aligned_cols=166 Identities=17% Similarity=0.167 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCH--HHHHHHCCCCEEEEEEEECCCEE
Q ss_conf 9718999889999989999999851898179986118889998323553000123--54211102763644555048605
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQ--SQFKGWKHTGLFIETTKVRDEYY 78 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~--e~F~~~i~~g~flE~~~~~g~~Y 78 (185)
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~-v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLf------aadR~ 74 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIK-VVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLF------AADRA 74 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCE-EEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHH------HHHHH
T ss_conf 96299997888898899999999999982980-799868999869999999973886678889999999------99999
Q ss_pred EEECCCHHHHHHHCCCCCCC---------------CCCCCHHHHHHCCCC--C-HHHHHHCCCCHHHHHHHHHHCCCC-C
Q ss_conf 54432002333201232002---------------431000133210553--1-011222133289999988630342-0
Q gi|254781197|r 79 GYLKEDINNPMEHGYDILLI---------------LTHQGLAPLKKLYED--Q-VTSIFIAPPSEAELIQRRIKRRED-T 139 (185)
Q Consensus 79 Gt~~~~i~~~~~~g~~~il~---------------id~~G~~~lk~~~~~--~-~~~IfI~pps~~~L~~RL~~R~~d-~ 139 (185)
T Consensus 75 ~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~-~e~al~R~~~r~~~~~ 153 (208)
T COG0125 75 QHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVP-PEVALERIRKRGELRD 153 (208)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECC-HHHHHHHHHHCCCCCC
T ss_conf 999999788762899999878313788853530599989999999765478999889999488-8999999983277655
Q ss_pred HHHH-----HHHH----HHHHHCCC--EEEEC--CCHHHHHHHHHHHH
Q ss_conf 7899-----9999----98763698--89993--97899999999999
Q gi|254781197|r 140 PFNL-----DPDL----FGKNHSYS--FTIVN--NHLPTACRQVGFIR 174 (185)
Q Consensus 140 ~~~i-----~~rl----~~~~~~fD--~~IvN--ddle~a~~~l~~I~ 174 (185)
T Consensus 154 r~E~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l 201 (208)
T COG0125 154 RFEKEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKIL 201 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 156677899999999999998618771899989999799999999999