HHsearch alignment for GI: 254781197 and conserved domain: COG0125

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism].
Probab=98.41  E-value=3.3e-07  Score=62.70  Aligned_cols=166  Identities=17%  Similarity=0.167  Sum_probs=79.0

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCH--HHHHHHCCCCEEEEEEEECCCEE
Q ss_conf             9718999889999989999999851898179986118889998323553000123--54211102763644555048605
Q gi|254781197|r    1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQ--SQFKGWKHTGLFIETTKVRDEYY   78 (185)
Q Consensus         1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~--e~F~~~i~~g~flE~~~~~g~~Y   78 (185)
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~-v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLf------aadR~   74 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIK-VVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLF------AADRA   74 (208)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCE-EEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHH------HHHHH
T ss_conf             96299997888898899999999999982980-799868999869999999973886678889999999------99999


Q ss_pred             EEECCCHHHHHHHCCCCCCC---------------CCCCCHHHHHHCCCC--C-HHHHHHCCCCHHHHHHHHHHCCCC-C
Q ss_conf             54432002333201232002---------------431000133210553--1-011222133289999988630342-0
Q gi|254781197|r   79 GYLKEDINNPMEHGYDILLI---------------LTHQGLAPLKKLYED--Q-VTSIFIAPPSEAELIQRRIKRRED-T  139 (185)
Q Consensus        79 Gt~~~~i~~~~~~g~~~il~---------------id~~G~~~lk~~~~~--~-~~~IfI~pps~~~L~~RL~~R~~d-~  139 (185)
T Consensus        75 ~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~-~e~al~R~~~r~~~~~  153 (208)
T COG0125          75 QHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVP-PEVALERIRKRGELRD  153 (208)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECC-HHHHHHHHHHCCCCCC
T ss_conf             999999788762899999878313788853530599989999999765478999889999488-8999999983277655


Q ss_pred             HHHH-----HHHH----HHHHHCCC--EEEEC--CCHHHHHHHHHHHH
Q ss_conf             7899-----9999----98763698--89993--97899999999999
Q gi|254781197|r  140 PFNL-----DPDL----FGKNHSYS--FTIVN--NHLPTACRQVGFIR  174 (185)
Q Consensus       140 ~~~i-----~~rl----~~~~~~fD--~~IvN--ddle~a~~~l~~I~  174 (185)
T Consensus       154 r~E~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l  201 (208)
T COG0125         154 RFEKEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKIL  201 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf             156677899999999999998618771899989999799999999999