HHsearch alignment for GI: 254781197 and conserved domain: PRK07261
>PRK07261 topology modulation protein; Provisional.
Probab=97.95 E-value=7.8e-06 Score=54.69 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=39.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEE-EEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEE--EEEEECCCEEE
Q ss_conf 99988999998999999985189--81799-861188899983235530001235421110276364--45550486055
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSE--YLVMP-VGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFI--ETTKVRDEYYG 79 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~--~~~~~-is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~fl--E~~~~~g~~YG 79 (185)
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l~w~-----p~w---~---~~~~~e~~~~~~~--~~~~~~WIiDGny~~ 69 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHYNCPVLHLDQLHFS-----SNW---Q---ERDDDDMIADISN--FLLKQDWIIEGNYSN 69 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEEC-----CCC---E---ECCHHHHHHHHHH--HHHCCCEEEECCCCC
T ss_conf 99988999868999999999879797970227888-----999---8---8889999999999--984898799478512
Q ss_pred EECC
Q ss_conf 4432
Q gi|254781197|r 80 YLKE 83 (185)
Q Consensus 80 t~~~ 83 (185)
T Consensus 70 ~~~~ 73 (171)
T PRK07261 70 CLYE 73 (171)
T ss_pred HHHH
T ss_conf 4777