HHsearch alignment for GI: 254781197 and conserved domain: PRK07261

>PRK07261 topology modulation protein; Provisional.
Probab=97.95  E-value=7.8e-06  Score=54.69  Aligned_cols=66  Identities=18%  Similarity=0.232  Sum_probs=39.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCC--CEEEE-EEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEE--EEEEECCCEEE
Q ss_conf             99988999998999999985189--81799-861188899983235530001235421110276364--45550486055
Q gi|254781197|r    5 FVLIGASGVGETTIAKQVVLNSE--YLVMP-VGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFI--ETTKVRDEYYG   79 (185)
Q Consensus         5 ivi~GpSGsGK~tl~~~L~~~~~--~~~~~-is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~fl--E~~~~~g~~YG   79 (185)
T Consensus         3 I~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l~w~-----p~w---~---~~~~~e~~~~~~~--~~~~~~WIiDGny~~   69 (171)
T PRK07261          3 IAIIGYSGSGKSTLARFLGQHYNCPVLHLDQLHFS-----SNW---Q---ERDDDDMIADISN--FLLKQDWIIEGNYSN   69 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEEC-----CCC---E---ECCHHHHHHHHHH--HHHCCCEEEECCCCC
T ss_conf             99988999868999999999879797970227888-----999---8---8889999999999--984898799478512


Q ss_pred             EECC
Q ss_conf             4432
Q gi|254781197|r   80 YLKE   83 (185)
Q Consensus        80 t~~~   83 (185)
T Consensus        70 ~~~~   73 (171)
T PRK07261         70 CLYE   73 (171)
T ss_pred             HHHH
T ss_conf             4777