HHsearch alignment for GI: 254781197 and conserved domain: PRK08118
>PRK08118 topology modulation protein; Reviewed.
Probab=97.71 E-value=3e-05 Score=51.27 Aligned_cols=64 Identities=17% Similarity=0.301 Sum_probs=36.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE----EEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEE--EEEEEC
Q ss_conf 97189998899999899999998518981799----861188899983235530001235421110276364--455504
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMP----VGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFI--ETTKVR 74 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~----is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~fl--E~~~~~ 74 (185)
T Consensus 1 M~r-I~IiG~~GsGKSTlAr~L~~~~-~ip~~~LD~l~w~-----~~---w~---~~~~~e~~~~~~--~~~~~~~WIid 65 (167)
T PRK08118 1 MKK-IILIGSGGSGKSTLARQLGEKL-NIPVHHLDALFWK-----PN---WE---GVPKEEQRTVQN--ELVKEDEWIID 65 (167)
T ss_pred CCE-EEEECCCCCCHHHHHHHHHHHH-CCCEEECCCEEEC-----CC---CC---CCCHHHHHHHHH--HHHHCCCEEEE
T ss_conf 967-9998899987999999999988-9697964434766-----89---94---688899999999--99838987994
Q ss_pred CCEEE
Q ss_conf 86055
Q gi|254781197|r 75 DEYYG 79 (185)
Q Consensus 75 g~~YG 79 (185)
T Consensus 66 Gny~~ 70 (167)
T PRK08118 66 GNYGG 70 (167)
T ss_pred CCCHH
T ss_conf 77177