HHsearch alignment for GI: 254781197 and conserved domain: PRK13946
>PRK13946 shikimate kinase; Provisional.
Probab=98.16 E-value=7.1e-06 Score=54.90 Aligned_cols=147 Identities=14% Similarity=0.223 Sum_probs=71.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC--CCCC--CHHHHHHHCCCCEEEEEEEECCCE
Q ss_conf 718999889999989999999851898179986118889998323553--0001--235421110276364455504860
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYID--YRFI--SQSQFKGWKHTGLFIETTKVRDEY 77 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~d--Y~Fv--s~e~F~~~i~~g~flE~~~~~g~~ 77 (185)
T Consensus 20 kknIvLIG~mGsGKStvGk~LA~~L~-~~fi--D~D~~I--E~~~g~sI~eIF~~~GE~~FR~~-------E~------- 80 (195)
T PRK13946 20 KRTVVLVGLMGAGKSTVGRRLATMLG-LPFL--DADTEI--ERAARMTIPEIFATYGEPEFRDL-------ER------- 80 (195)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHC-CCEE--ECHHHH--HHHHCCCHHHHHHHHCHHHHHHH-------HH-------
T ss_conf 99589989999988999999999979-7989--885999--99809989999998697999998-------99-------
Q ss_pred EEEECCCHHH-------HHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCC-------CCCHHH-
Q ss_conf 5544320023-------3320123200243100013321055310112221332899999886303-------420789-
Q gi|254781197|r 78 YGYLKEDINN-------PMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRR-------EDTPFN- 142 (185)
Q Consensus 78 YGt~~~~i~~-------~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~-------~d~~~~- 142 (185)
T Consensus 81 -----~~l~~l~~~~~~VIstGGG~v~--~~~n~~~L~~----~g~vI~L~~-~~e~l~~Rl~~~~~RPLl~~~~~~~~l 148 (195)
T PRK13946 81 -----RVIARLLKGGPLVLATGGGAFM--NEETRAAIRE----KGISVWLKA-DLDVLWERVSRRDTRPLLRTADPKETL 148 (195)
T ss_pred -----HHHHHHHCCCCEEEECCCCCCC--CHHHHHHHHH----CCEEEEEEC-CHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf -----9999986489879975874236--8999999995----796899849-999999997289999989998879999
Q ss_pred ---HHHHHHHHHHCCCEEEECC--CHHHHHHHH-HHHHHHHHHC
Q ss_conf ---9999998763698899939--789999999-9999999852
Q gi|254781197|r 143 ---LDPDLFGKNHSYSFTIVNN--HLPTACRQV-GFIREFVKQH 180 (185)
Q Consensus 143 ---i~~rl~~~~~~fD~~IvNd--dle~a~~~l-~~I~e~~~~~ 180 (185)
T Consensus 149 ~~l~~~R~~lY~~-Ad~~I~t~~~s~~~ia~eIi~~L~~~~~~~ 191 (195)
T PRK13946 149 ARLMEERYPVYAQ-ADLTVESRDVPHEVIADEVIEALAAYLEVE 191 (195)
T ss_pred HHHHHHHHHHHHH-CCEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999997-898988998999999999999999998566