HHsearch alignment for GI: 254781197 and conserved domain: PRK13946

>PRK13946 shikimate kinase; Provisional.
Probab=98.16  E-value=7.1e-06  Score=54.90  Aligned_cols=147  Identities=14%  Similarity=0.223  Sum_probs=71.6

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC--CCCC--CHHHHHHHCCCCEEEEEEEECCCE
Q ss_conf             718999889999989999999851898179986118889998323553--0001--235421110276364455504860
Q gi|254781197|r    2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYID--YRFI--SQSQFKGWKHTGLFIETTKVRDEY   77 (185)
Q Consensus         2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~d--Y~Fv--s~e~F~~~i~~g~flE~~~~~g~~   77 (185)
T Consensus        20 kknIvLIG~mGsGKStvGk~LA~~L~-~~fi--D~D~~I--E~~~g~sI~eIF~~~GE~~FR~~-------E~-------   80 (195)
T PRK13946         20 KRTVVLVGLMGAGKSTVGRRLATMLG-LPFL--DADTEI--ERAARMTIPEIFATYGEPEFRDL-------ER-------   80 (195)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHC-CCEE--ECHHHH--HHHHCCCHHHHHHHHCHHHHHHH-------HH-------
T ss_conf             99589989999988999999999979-7989--885999--99809989999998697999998-------99-------


Q ss_pred             EEEECCCHHH-------HHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCC-------CCCHHH-
Q ss_conf             5544320023-------3320123200243100013321055310112221332899999886303-------420789-
Q gi|254781197|r   78 YGYLKEDINN-------PMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRR-------EDTPFN-  142 (185)
Q Consensus        78 YGt~~~~i~~-------~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~-------~d~~~~-  142 (185)
T Consensus        81 -----~~l~~l~~~~~~VIstGGG~v~--~~~n~~~L~~----~g~vI~L~~-~~e~l~~Rl~~~~~RPLl~~~~~~~~l  148 (195)
T PRK13946         81 -----RVIARLLKGGPLVLATGGGAFM--NEETRAAIRE----KGISVWLKA-DLDVLWERVSRRDTRPLLRTADPKETL  148 (195)
T ss_pred             -----HHHHHHHCCCCEEEECCCCCCC--CHHHHHHHHH----CCEEEEEEC-CHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf             -----9999986489879975874236--8999999995----796899849-999999997289999989998879999


Q ss_pred             ---HHHHHHHHHHCCCEEEECC--CHHHHHHHH-HHHHHHHHHC
Q ss_conf             ---9999998763698899939--789999999-9999999852
Q gi|254781197|r  143 ---LDPDLFGKNHSYSFTIVNN--HLPTACRQV-GFIREFVKQH  180 (185)
Q Consensus       143 ---i~~rl~~~~~~fD~~IvNd--dle~a~~~l-~~I~e~~~~~  180 (185)
T Consensus       149 ~~l~~~R~~lY~~-Ad~~I~t~~~s~~~ia~eIi~~L~~~~~~~  191 (195)
T PRK13946        149 ARLMEERYPVYAQ-ADLTVESRDVPHEVIADEVIEALAAYLEVE  191 (195)
T ss_pred             HHHHHHHHHHHHH-CCEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999997-898988998999999999999999998566